Query 047139
Match_columns 611
No_of_seqs 486 out of 4093
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 13:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.4E-73 1.1E-77 641.8 46.6 547 38-603 8-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.6E-62 1.2E-66 551.8 35.7 499 82-599 126-743 (768)
3 4eco_A Uncharacterized protein 100.0 3.6E-55 1.2E-59 483.6 34.4 456 39-574 27-601 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 1.1E-53 3.6E-58 479.5 34.0 472 37-596 264-863 (876)
5 1ziw_A TOLL-like receptor 3; i 100.0 4.4E-51 1.5E-55 456.8 48.3 513 70-605 4-605 (680)
6 1ziw_A TOLL-like receptor 3; i 100.0 6.1E-51 2.1E-55 455.7 40.3 500 82-601 49-626 (680)
7 3t6q_A CD180 antigen; protein- 100.0 6.1E-51 2.1E-55 449.6 39.4 484 72-601 14-564 (606)
8 3t6q_A CD180 antigen; protein- 100.0 3.3E-50 1.1E-54 443.8 39.5 465 111-611 26-550 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-49 3.7E-54 439.6 36.5 478 82-602 32-563 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-48 3.7E-53 431.7 34.0 458 106-608 21-544 (606)
11 3j0a_A TOLL-like receptor 5; m 100.0 5.7E-48 1.9E-52 440.3 31.2 488 70-601 14-564 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 2.9E-47 9.8E-52 415.3 32.4 479 69-601 3-514 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 1.7E-46 5.9E-51 411.1 33.0 424 147-602 45-536 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 1.2E-44 4E-49 396.5 36.4 442 82-578 28-536 (570)
15 2z7x_B TOLL-like receptor 1, v 100.0 6.5E-46 2.2E-50 401.7 25.9 447 106-601 10-485 (520)
16 3j0a_A TOLL-like receptor 5; m 100.0 1E-44 3.6E-49 413.4 34.0 447 131-609 49-551 (844)
17 4eco_A Uncharacterized protein 100.0 1.2E-46 4.2E-51 415.5 16.6 431 131-597 82-600 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 3.6E-44 1.2E-48 390.8 35.7 456 111-611 19-500 (549)
19 2z7x_B TOLL-like receptor 1, v 100.0 3.3E-45 1.1E-49 396.1 22.5 443 134-611 4-471 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 2.4E-45 8.2E-50 411.9 20.1 438 130-603 323-846 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.3E-43 2.5E-47 381.1 28.5 458 85-602 34-515 (562)
22 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-41 1.2E-45 373.8 35.2 454 121-598 53-581 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.7E-42 1.3E-46 375.5 22.8 443 123-611 34-500 (562)
24 4g8a_A TOLL-like receptor 4; l 100.0 9E-40 3.1E-44 362.4 39.5 446 82-575 52-582 (635)
25 3v47_A TOLL-like receptor 5B a 100.0 1.1E-40 3.9E-45 354.5 30.2 376 154-602 30-413 (455)
26 1ogq_A PGIP-2, polygalacturona 100.0 7.8E-41 2.7E-45 336.7 19.6 293 38-392 2-302 (313)
27 1jl5_A Outer protein YOPM; leu 100.0 5.2E-40 1.8E-44 347.1 24.4 389 135-603 16-435 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 4.4E-39 1.5E-43 342.2 28.5 365 120-577 30-412 (455)
29 1jl5_A Outer protein YOPM; leu 100.0 3.4E-39 1.2E-43 340.8 25.3 384 152-608 9-422 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-37 7.6E-42 327.2 28.8 365 109-605 31-395 (457)
31 1o6v_A Internalin A; bacterial 100.0 1.6E-35 5.4E-40 315.3 32.8 378 119-608 45-433 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-36 6E-41 320.3 24.7 408 81-609 41-455 (457)
33 1o6v_A Internalin A; bacterial 100.0 6.9E-34 2.3E-38 302.7 34.8 344 82-549 46-389 (466)
34 3o6n_A APL1; leucine-rich repe 100.0 2E-33 7E-38 292.1 27.6 176 118-318 43-218 (390)
35 2id5_A Lingo-1, leucine rich r 100.0 4.5E-33 1.5E-37 297.6 28.4 177 155-339 33-209 (477)
36 2id5_A Lingo-1, leucine rich r 100.0 7.7E-33 2.6E-37 295.8 29.5 320 156-548 13-333 (477)
37 3oja_B Anopheles plasmodium-re 100.0 1.9E-32 6.4E-37 300.5 28.7 168 136-318 57-224 (597)
38 4fcg_A Uncharacterized protein 100.0 5.7E-34 1.9E-38 288.3 14.0 267 37-340 22-311 (328)
39 3o6n_A APL1; leucine-rich repe 100.0 1.5E-31 5E-36 278.1 29.7 151 177-339 44-195 (390)
40 3oja_B Anopheles plasmodium-re 100.0 2.8E-31 9.7E-36 291.1 30.3 311 177-599 50-360 (597)
41 4fmz_A Internalin; leucine ric 100.0 1.1E-30 3.9E-35 267.0 32.0 307 150-597 40-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 1.1E-30 3.9E-35 267.0 29.3 308 115-573 39-346 (347)
43 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-31 3.9E-36 269.8 14.4 248 131-417 51-302 (313)
44 1z7x_W Ribonuclease inhibitor; 100.0 4.6E-33 1.6E-37 296.3 0.3 386 155-600 4-443 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 7.8E-34 2.7E-38 302.3 -5.8 364 178-599 3-413 (461)
46 3ogk_B Coronatine-insensitive 100.0 4.7E-33 1.6E-37 305.9 -1.9 432 113-591 66-545 (592)
47 2ft3_A Biglycan; proteoglycan, 100.0 6.5E-29 2.2E-33 252.2 25.5 75 470-546 255-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 2.5E-28 8.7E-33 247.6 27.4 149 155-316 32-182 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-28 3.7E-33 250.5 24.4 289 234-595 34-331 (332)
50 1xku_A Decorin; proteoglycan, 100.0 8.7E-28 3E-32 243.7 28.0 263 136-440 58-330 (330)
51 3ogk_B Coronatine-insensitive 100.0 4.8E-31 1.6E-35 289.9 0.9 425 145-599 64-528 (592)
52 2z80_A TOLL-like receptor 2, v 100.0 6.5E-28 2.2E-32 247.0 19.5 283 119-423 30-318 (353)
53 2z66_A Variable lymphocyte rec 100.0 4.3E-28 1.5E-32 243.2 17.5 261 120-426 28-294 (306)
54 2z80_A TOLL-like receptor 2, v 99.9 3.7E-27 1.3E-31 241.4 18.8 286 152-552 29-318 (353)
55 4fcg_A Uncharacterized protein 99.9 6E-27 2.1E-31 236.7 19.6 231 119-393 80-313 (328)
56 1ozn_A Reticulon 4 receptor; N 99.9 5.4E-26 1.8E-30 225.5 21.3 217 145-398 25-242 (285)
57 2p1m_B Transport inhibitor res 99.9 5.3E-30 1.8E-34 281.7 -9.3 438 115-571 61-542 (594)
58 3zyi_A Leucine-rich repeat-con 99.9 8.7E-26 3E-30 239.2 22.9 214 143-369 88-302 (452)
59 2z66_A Variable lymphocyte rec 99.9 4.3E-26 1.5E-30 228.6 19.0 249 135-421 12-263 (306)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-25 4.7E-30 222.5 22.3 215 106-340 21-235 (285)
61 3zyj_A Leucine-rich repeat-con 99.9 3.8E-25 1.3E-29 233.4 24.1 211 146-369 80-291 (440)
62 1wwl_A Monocyte differentiatio 99.9 1.9E-27 6.6E-32 238.9 4.7 248 132-394 45-309 (312)
63 2o6q_A Variable lymphocyte rec 99.9 6.2E-25 2.1E-29 215.9 21.9 219 67-320 2-220 (270)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-24 4.4E-29 236.3 25.9 266 234-582 41-306 (622)
65 2p1m_B Transport inhibitor res 99.9 2.7E-28 9.1E-33 268.1 -3.2 405 149-597 61-519 (594)
66 3g06_A SSPH2 (leucine-rich rep 99.9 6.4E-24 2.2E-28 230.8 30.3 153 121-317 41-193 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-26 3.9E-31 233.9 8.0 91 478-579 190-282 (317)
68 3zyi_A Leucine-rich repeat-con 99.9 2.9E-24 9.9E-29 227.5 26.4 236 145-395 68-304 (452)
69 3o53_A Protein LRIM1, AGAP0063 99.9 7.3E-27 2.5E-31 235.3 6.1 268 122-415 2-271 (317)
70 3zyj_A Leucine-rich repeat-con 99.9 3.7E-24 1.3E-28 225.8 26.6 235 145-394 57-292 (440)
71 1wwl_A Monocyte differentiatio 99.9 8.1E-27 2.8E-31 234.4 2.1 252 149-443 38-310 (312)
72 3oja_A Leucine-rich immune mol 99.9 8.7E-25 3E-29 232.9 13.7 229 355-608 32-262 (487)
73 3oja_A Leucine-rich immune mol 99.9 1.8E-24 6.1E-29 230.5 13.0 221 143-413 47-269 (487)
74 2o6q_A Variable lymphocyte rec 99.9 6.9E-22 2.3E-26 194.1 23.9 200 121-341 17-216 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 4.6E-22 1.6E-26 196.1 21.7 216 145-398 21-241 (276)
76 3m19_A Variable lymphocyte rec 99.9 3E-22 1E-26 194.4 19.5 160 154-320 35-194 (251)
77 3rfs_A Internalin B, repeat mo 99.9 1.6E-22 5.4E-27 198.8 17.5 177 151-339 38-214 (272)
78 3rfs_A Internalin B, repeat mo 99.9 6.6E-23 2.3E-27 201.5 14.7 183 116-319 37-219 (272)
79 2z62_A TOLL-like receptor 4, v 99.9 1.8E-22 6.2E-27 199.0 17.8 203 120-341 28-235 (276)
80 1p9a_G Platelet glycoprotein I 99.9 1.8E-21 6.3E-26 192.8 20.9 200 116-340 6-205 (290)
81 3goz_A Leucine-rich repeat-con 99.9 1.5E-23 5E-28 215.2 4.9 115 461-579 173-303 (362)
82 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 3.9E-28 218.2 3.6 43 273-315 24-70 (386)
83 2ca6_A RAN GTPase-activating p 99.9 2.2E-23 7.5E-28 216.1 5.0 243 146-422 24-319 (386)
84 1p9a_G Platelet glycoprotein I 99.9 9.8E-21 3.3E-25 187.5 22.5 204 149-394 5-208 (290)
85 2ast_B S-phase kinase-associat 99.9 5.2E-24 1.8E-28 216.4 -1.2 236 67-340 34-282 (336)
86 2ast_B S-phase kinase-associat 99.9 9.1E-23 3.1E-27 207.3 7.7 242 147-427 61-314 (336)
87 3goz_A Leucine-rich repeat-con 99.9 4.1E-23 1.4E-27 211.9 3.7 260 135-398 3-301 (362)
88 2xwt_C Thyrotropin receptor; s 99.9 5.9E-21 2E-25 183.8 15.6 193 134-340 35-236 (239)
89 4glp_A Monocyte differentiatio 99.8 5E-21 1.7E-25 191.9 14.0 194 132-339 93-303 (310)
90 2xwt_C Thyrotropin receptor; s 99.8 2.2E-20 7.5E-25 179.8 16.8 188 106-316 41-237 (239)
91 4glp_A Monocyte differentiatio 99.8 8.3E-21 2.8E-25 190.3 13.6 196 102-319 97-308 (310)
92 3m19_A Variable lymphocyte rec 99.8 1.1E-19 3.8E-24 176.2 20.0 177 154-341 14-190 (251)
93 1h6u_A Internalin H; cell adhe 99.8 3.6E-20 1.2E-24 185.3 16.8 192 116-341 37-228 (308)
94 2o6s_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 174.0 13.8 163 120-306 28-190 (208)
95 3cvr_A Invasion plasmid antige 99.8 2.9E-20 9.8E-25 199.7 14.2 205 63-329 35-253 (571)
96 1h6u_A Internalin H; cell adhe 99.8 2.1E-19 7.2E-24 179.7 19.1 191 82-319 41-231 (308)
97 3cvr_A Invasion plasmid antige 99.8 4.7E-20 1.6E-24 198.0 12.3 186 358-606 60-252 (571)
98 4ay9_X Follicle-stimulating ho 99.8 7.4E-19 2.5E-23 179.2 17.3 162 149-318 49-215 (350)
99 2o6s_A Variable lymphocyte rec 99.8 7.5E-19 2.6E-23 165.2 15.8 177 136-330 13-189 (208)
100 3e6j_A Variable lymphocyte rec 99.8 1.6E-18 5.4E-23 165.4 16.9 18 62-79 11-28 (229)
101 4b8c_D Glucose-repressible alc 99.8 2.1E-20 7.1E-25 208.2 2.0 237 39-315 129-369 (727)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 8.2E-18 2.8E-22 159.3 16.7 118 199-322 53-170 (220)
103 1h6t_A Internalin B; cell adhe 99.8 5.6E-18 1.9E-22 167.8 15.8 172 117-319 43-214 (291)
104 4ay9_X Follicle-stimulating ho 99.8 1.1E-17 3.7E-22 170.6 18.1 241 236-545 12-256 (350)
105 2v9t_B SLIT homolog 2 protein 99.8 1.4E-17 4.9E-22 157.6 17.5 135 179-320 33-167 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 6.6E-18 2.3E-22 160.0 14.8 134 459-601 36-170 (220)
107 2v9t_B SLIT homolog 2 protein 99.8 1.6E-17 5.4E-22 157.3 16.9 134 154-294 32-165 (220)
108 3e6j_A Variable lymphocyte rec 99.7 4.6E-17 1.6E-21 155.2 17.9 136 154-321 40-175 (229)
109 1h6t_A Internalin B; cell adhe 99.7 7.8E-18 2.7E-22 166.8 12.7 171 150-342 42-212 (291)
110 1m9s_A Internalin B; cell inva 99.7 1.5E-17 5.3E-22 180.5 15.9 174 116-320 39-212 (605)
111 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.7E-22 171.3 12.9 158 155-319 40-203 (361)
112 4ezg_A Putative uncharacterize 99.7 1E-17 3.5E-22 155.9 11.2 154 151-318 41-194 (197)
113 2xot_A Amphoterin-induced prot 99.7 7.1E-17 2.4E-21 165.2 16.1 173 157-340 21-199 (361)
114 4ezg_A Putative uncharacterize 99.7 9.7E-17 3.3E-21 149.2 15.1 154 117-295 41-195 (197)
115 1m9s_A Internalin B; cell inva 99.7 3.1E-17 1.1E-21 178.1 11.7 171 150-342 39-209 (605)
116 1dce_A Protein (RAB geranylger 99.7 3.8E-19 1.3E-23 192.0 -3.8 108 480-601 442-550 (567)
117 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.6E-24 195.5 -8.0 197 117-337 346-567 (567)
118 1xeu_A Internalin C; cellular 99.7 1.2E-16 4.2E-21 155.6 12.3 152 149-320 36-187 (263)
119 1w8a_A SLIT protein; signaling 99.7 2.4E-16 8.3E-21 145.8 11.5 132 432-577 11-143 (192)
120 1xeu_A Internalin C; cellular 99.6 9.1E-16 3.1E-20 149.4 14.0 159 106-296 29-187 (263)
121 4b8c_D Glucose-repressible alc 99.6 2.7E-17 9.3E-22 183.1 2.7 145 430-594 225-369 (727)
122 1w8a_A SLIT protein; signaling 99.6 2.5E-15 8.6E-20 138.9 14.8 89 234-322 55-143 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 1.8E-15 6.3E-20 136.7 11.9 132 154-294 24-160 (168)
124 2je0_A Acidic leucine-rich nuc 99.6 7.9E-16 2.7E-20 136.1 8.7 125 458-593 20-149 (149)
125 2ell_A Acidic leucine-rich nuc 99.6 2E-15 6.9E-20 136.4 10.6 138 119-276 23-165 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 1.7E-15 5.9E-20 133.9 9.0 127 154-289 17-148 (149)
127 2wfh_A SLIT homolog 2 protein 99.6 7.2E-15 2.5E-19 135.8 12.6 127 432-574 13-140 (193)
128 3sb4_A Hypothetical leucine ri 99.6 1.9E-15 6.5E-20 152.5 6.3 58 256-314 100-157 (329)
129 2wfh_A SLIT homolog 2 protein 99.6 4.3E-14 1.5E-18 130.6 14.3 67 253-319 74-140 (193)
130 3sb4_A Hypothetical leucine ri 99.6 2.7E-14 9.2E-19 144.1 13.9 213 119-336 48-327 (329)
131 2o6r_A Variable lymphocyte rec 99.5 7.4E-14 2.5E-18 127.2 14.4 65 255-319 74-138 (177)
132 2o6r_A Variable lymphocyte rec 99.5 9.6E-14 3.3E-18 126.5 14.5 133 156-298 9-141 (177)
133 1a9n_A U2A', U2A'; complex (nu 99.5 8.2E-14 2.8E-18 126.8 9.1 130 150-292 15-151 (176)
134 1a9n_A U2A', U2A'; complex (nu 99.5 6.6E-14 2.3E-18 127.4 8.5 125 458-597 22-153 (176)
135 1ds9_A Outer arm dynein; leuci 99.5 9.7E-16 3.3E-20 142.6 -4.0 149 430-597 19-185 (198)
136 3g39_A Variable lymphocyte rec 99.4 3.2E-13 1.1E-17 122.0 10.9 88 511-599 30-117 (170)
137 1ds9_A Outer arm dynein; leuci 99.4 8.5E-16 2.9E-20 143.0 -7.0 114 149-274 43-157 (198)
138 4fdw_A Leucine rich hypothetic 99.4 1E-11 3.6E-16 127.9 21.6 248 148-417 130-381 (401)
139 2r9u_A Variable lymphocyte rec 99.4 7.2E-13 2.5E-17 120.0 11.1 86 511-597 33-118 (174)
140 4fdw_A Leucine rich hypothetic 99.4 4.1E-11 1.4E-15 123.5 23.0 228 146-394 150-383 (401)
141 3g39_A Variable lymphocyte rec 99.3 9.2E-12 3.1E-16 112.3 12.7 62 154-216 30-91 (170)
142 4fs7_A Uncharacterized protein 99.3 5.7E-11 1.9E-15 122.8 19.9 102 474-589 292-393 (394)
143 4fs7_A Uncharacterized protein 99.3 1.5E-10 5.2E-15 119.5 22.5 82 471-565 312-393 (394)
144 2r9u_A Variable lymphocyte rec 99.3 1.6E-11 5.6E-16 111.0 12.7 36 154-189 33-68 (174)
145 3un9_A NLR family member X1; l 99.2 1.7E-12 5.8E-17 132.5 1.8 136 458-597 129-283 (372)
146 3un9_A NLR family member X1; l 99.2 6.5E-13 2.2E-17 135.6 -1.8 169 381-574 101-284 (372)
147 2ifg_A High affinity nerve gro 99.2 8.2E-11 2.8E-15 119.4 11.0 104 460-575 13-118 (347)
148 4gt6_A Cell surface protein; l 99.0 5.7E-08 1.9E-12 100.1 26.0 111 471-596 280-390 (394)
149 2ifg_A High affinity nerve gro 99.0 7.9E-10 2.7E-14 112.1 11.7 73 146-220 24-97 (347)
150 2ra8_A Uncharacterized protein 98.9 2.4E-10 8.3E-15 115.6 0.5 192 114-339 133-339 (362)
151 4gt6_A Cell surface protein; l 98.9 2.3E-07 8E-12 95.5 22.9 89 470-572 302-390 (394)
152 2ra8_A Uncharacterized protein 98.7 9.9E-09 3.4E-13 103.7 6.8 140 277-421 168-322 (362)
153 4h09_A Hypothetical leucine ri 98.6 1.2E-05 4.3E-10 82.0 24.7 101 471-583 255-355 (379)
154 4h09_A Hypothetical leucine ri 98.5 6.5E-06 2.2E-10 84.1 21.5 113 470-594 231-343 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 1E-08 3.6E-13 93.4 0.4 123 471-597 28-164 (185)
156 3rw6_A Nuclear RNA export fact 98.4 3.3E-08 1.1E-12 94.7 1.2 65 510-577 169-237 (267)
157 3rw6_A Nuclear RNA export fact 98.4 1.8E-07 6.1E-12 89.6 6.0 99 460-566 148-257 (267)
158 1io0_A Tropomodulin; LRR prote 98.4 5.2E-08 1.8E-12 88.8 1.2 112 458-573 39-164 (185)
159 3e4g_A ATP synthase subunit S, 98.2 4.8E-07 1.6E-11 80.3 3.2 83 480-571 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 4E-06 1.4E-10 74.4 3.0 35 155-189 62-96 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 2.5E-05 8.6E-10 70.6 2.4 118 475-596 37-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.0001 3.5E-09 66.6 2.3 111 458-573 44-170 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0016 5.4E-08 54.8 6.1 36 512-547 32-67 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0028 9.6E-08 53.3 5.1 58 514-574 11-69 (130)
165 2lz0_A Uncharacterized protein 46.1 23 0.00078 27.4 4.3 16 472-487 13-28 (100)
166 2lz0_A Uncharacterized protein 35.7 1.2E+02 0.0041 23.2 7.0 46 245-291 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-73 Score=641.84 Aligned_cols=547 Identities=33% Similarity=0.460 Sum_probs=426.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCCcccEEecCCCCcEEEEeCCCCCCCC--------------------
Q 047139 38 GCKEVEREALLQFKQNLTDPSGRLSSW-VGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDS-------------------- 96 (611)
Q Consensus 38 ~~~~~~~~~ll~~k~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~-------------------- 96 (611)
.+.++|++||++||+++.||. .+++| .+.+||+|+||+|+ +|||++|++++....+
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 346899999999999999998 89999 68899999999998 6999999998753321
Q ss_pred ----------------CCcccccccccceeeeCc--cccCCCCCCEEECCCC---------------CCCeEEccCCcCc
Q 047139 97 ----------------FDSYEDDAVHELRGKISP--SLLQLKDLEYLDLSLN---------------NFKVLDLSNNGFN 143 (611)
Q Consensus 97 ----------------~~~~~~~~~~~l~~~~~~--~l~~l~~L~~L~ls~n---------------~l~~L~L~~n~l~ 143 (611)
.++.++++.+.+.|.+|. .++++++|++|++++| ++++|++++|.++
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 164 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence 134456666777777776 7777777777777766 2447777777777
Q ss_pred cCCCcc---ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccc
Q 047139 144 STLPHW---LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVS 220 (611)
Q Consensus 144 ~~~p~~---l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 220 (611)
+..|.. +.++++|++|++++|.+.+..|. .++++|++|++++|. +.+.+|. ++++++|++|++++|.+++.+|
T Consensus 165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp EETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred CcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcCCcCCCccc
Confidence 766665 66677777777777776655443 677788888888887 5555665 7888888888888888888888
Q ss_pred hhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCc-ccCceEEecCCccccCCCc
Q 047139 221 DFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNL-TFLEELYLTSNQMNGKFPE 299 (611)
Q Consensus 221 ~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~ 299 (611)
..+..++ +|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|.
T Consensus 241 ~~l~~l~------~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~ 312 (768)
T 3rgz_A 241 RAISTCT------ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312 (768)
T ss_dssp HHTTTCS------SCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred HHHhcCC------CCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch
Confidence 7777776 7777777777776666554 66667777777777766666666554 6777777777777766777
Q ss_pred CCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCC----------------------CceeeccCCCCC--
Q 047139 300 SFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNS----------------------SLSFNISFDWIP-- 355 (611)
Q Consensus 300 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~----------------------~~~~~~~~~~~~-- 355 (611)
.++++++|++|++++|.+.+.+|...+..+++|++|++++|... .+.+..+.....
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~ 392 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCST
T ss_pred HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcc
Confidence 67777777777777777766666655666777777766664221 122223333333
Q ss_pred CcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccC-CCceE
Q 047139 356 PFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFR-FPGSV 434 (611)
Q Consensus 356 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~l~~l 434 (611)
+++|++|++++|.+.+.+|.++..+++|++|++++|++++.+|..+... ++|++|++++|++.+.+|..+... .++.+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 5678888888888888899999999999999999999999888887764 789999999999999999888755 89999
Q ss_pred EccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCC----------------CCCCCc
Q 047139 435 DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS----------------DMTNNN 498 (611)
Q Consensus 435 ~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~----------------~l~~n~ 498 (611)
++++|++++.+|..+..++.| ++|++++|++++.+|.+++.+++|++|++++|+++ +++.|.
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L--~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNL--NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTC--CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EecCCcccCcCCHHHhcCCCC--CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 999999999999887777665 66777999988888888888888888888888776 566777
Q ss_pred ccccCcccc----------------------------------------------------------------------c
Q 047139 499 FSGEIPESI----------------------------------------------------------------------G 508 (611)
Q Consensus 499 ~~g~ip~~~----------------------------------------------------------------------~ 508 (611)
++|.+|..+ +
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 776666543 3
Q ss_pred CcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCE
Q 047139 509 SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHI 588 (611)
Q Consensus 509 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 588 (611)
.+++|++|||++|+++|.+|..+++++.|+.|+|++|+++|.+|..++. +++|++|+|++|+++|.+|..+..+++|++
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~-L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 4577889999999999999999999999999999999999999998886 999999999999999999999999999999
Q ss_pred eeccCCcCccCCCcc
Q 047139 589 LDLSHNNLLGPIPYC 603 (611)
Q Consensus 589 L~ls~n~l~g~iP~~ 603 (611)
||+++|+++|.||..
T Consensus 709 L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEM 723 (768)
T ss_dssp EECCSSEEEEECCSS
T ss_pred EECcCCcccccCCCc
Confidence 999999999999974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.6e-62 Score=551.79 Aligned_cols=499 Identities=31% Similarity=0.453 Sum_probs=342.9
Q ss_pred CcEEEEeCCCCCCC-----------CCCcccccccccceeeeCcc---ccCCCCCCEEECCCC------------CCCeE
Q 047139 82 GSIIMLNLNNPFRD-----------SFDSYEDDAVHELRGKISPS---LLQLKDLEYLDLSLN------------NFKVL 135 (611)
Q Consensus 82 ~~v~~l~l~~~~~~-----------~~~~~~~~~~~~l~~~~~~~---l~~l~~L~~L~ls~n------------~l~~L 135 (611)
.+++.|++++.... ..++.+++..+.+.+..+.. +.++++|++|++++| ++++|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 205 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence 36788888874221 11455667777787777766 778888888888877 34588
Q ss_pred EccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccC
Q 047139 136 DLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF 215 (611)
Q Consensus 136 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 215 (611)
++++|.+++.+|. ++++++|++|++++|.+++.+|..++++++|++|++++|. +.+.+|.. .+++|++|++++|.+
T Consensus 206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~--~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ-FVGPIPPL--PLKSLQYLSLAENKF 281 (768)
T ss_dssp ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC-CEESCCCC--CCTTCCEEECCSSEE
T ss_pred ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc-ccCccCcc--ccCCCCEEECcCCcc
Confidence 8888888887776 8888888888888888888888888888888888888887 45555543 566666666666666
Q ss_pred CCccchhhhcC-cccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCC-ccCcccCceEEecCCcc
Q 047139 216 SGEVSDFIDGL-SECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS-LGNLTFLEELYLTSNQM 293 (611)
Q Consensus 216 ~~~~~~~l~~l-~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 293 (611)
++.+|..+... + +|++|++++|++++.+|..++++++|++|++++|.+++.+|.. +.++++|++|++++|.+
T Consensus 282 ~~~ip~~~~~~~~------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 282 TGEIPDFLSGACD------TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp EESCCCCSCTTCT------TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CCccCHHHHhhcC------cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 66666555443 3 6666666666666666666666666666666666666555554 56666666666666666
Q ss_pred ccCCCcCCCCCC-CCCEEEccCCccccccChhhhcC--CCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccC
Q 047139 294 NGKFPESFGQLS-AIRVLELSDNQWEGFITDAHLRN--LTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLG 370 (611)
Q Consensus 294 ~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 370 (611)
++.+|..+..++ +|++|++++|.+.+.++. .+.. +++|++|++++ + .+.+..+..+..+++|+.|++++|.+.
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~~~~L~~L~L~~--n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNTLQELYLQN--N-GFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCSTTCCCCEEECCS--S-EEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcccCCccEEECCC--C-ccccccCHHHhcCCCCCEEECcCCccc
Confidence 655665555554 556666666555555444 2322 45566666655 2 334444555555556666666666666
Q ss_pred cccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccC-CCceEEccCCcccccCCCCC
Q 047139 371 PKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFR-FPGSVDLSSNRFEGPIPLWS 449 (611)
Q Consensus 371 ~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~l~~l~ls~n~~~~~~p~~~ 449 (611)
+.+|..+..+++|++|++++|.+.+.+|..+... ++|++|++++|++++.+|..+... .++.|++++|++++.+|.++
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 6666666666666666666666666555555442 456666666666665555555433 56666666666666666555
Q ss_pred CCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCC-------------------------------------
Q 047139 450 SNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLS------------------------------------- 492 (611)
Q Consensus 450 ~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~------------------------------------- 492 (611)
..+..| ++|++++|++++.+|..++++++|++|++++|+++
T Consensus 511 ~~l~~L--~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (768)
T 3rgz_A 511 GRLENL--AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588 (768)
T ss_dssp GGCTTC--CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred hcCCCC--CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence 544443 44555666666666666666666666666555331
Q ss_pred -------------------------------------------------CCCCCcccccCcccccCcCCCCEEECcCCcc
Q 047139 493 -------------------------------------------------DMTNNNFSGEIPESIGSLLTIRFLVLSNNHL 523 (611)
Q Consensus 493 -------------------------------------------------~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l 523 (611)
+++.|.++|.+|..++++++|+.|+|++|++
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 668 (768)
T 3rgz_A 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668 (768)
T ss_dssp SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence 4567788899999999999999999999999
Q ss_pred cccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCc-CccC
Q 047139 524 SGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNN-LLGP 599 (611)
Q Consensus 524 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~-l~g~ 599 (611)
+|.+|..++++++|++|||++|+++|.+|..+.. +++|++|++++|+++|.+|+. ..+..+....+.+|+ +.|.
T Consensus 669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA-LTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG-CCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred CCCCChHHhCCCCCCEEECCCCcccCcCChHHhC-CCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 9999999999999999999999999999999986 999999999999999999976 456667777788886 6764
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.6e-55 Score=483.59 Aligned_cols=456 Identities=21% Similarity=0.344 Sum_probs=300.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCC--------CCCC-CCCCCCCc---ccEEecCCCCcEEEEeCCCCCCCCCCcccccccc
Q 047139 39 CKEVEREALLQFKQNLTDPSGR--------LSSW-VGEDCCSW---RGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVH 106 (611)
Q Consensus 39 ~~~~~~~~ll~~k~~~~~~~~~--------~~~W-~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~ 106 (611)
....|++||.++++++.+|... ..+| .+.+||.| .||+|+.. |||++|+|++ +
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~--------------~ 91 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEG--------------F 91 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTT--------------S
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecC--------------c
Confidence 3457999999999998765432 2379 67899999 99999864 9999999999 8
Q ss_pred cceeeeCccccCCCCCCEEECCCCCCC-----------------------eEEcc-------------------------
Q 047139 107 ELRGKISPSLLQLKDLEYLDLSLNNFK-----------------------VLDLS------------------------- 138 (611)
Q Consensus 107 ~l~~~~~~~l~~l~~L~~L~ls~n~l~-----------------------~L~L~------------------------- 138 (611)
++.|.+|++++++++|++|++++|+++ .++++
T Consensus 92 ~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~ 171 (636)
T 4eco_A 92 GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171 (636)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTT
T ss_pred ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcc
Confidence 999999999999999999999999651 01111
Q ss_pred --------------------CCcCccCCCccccCCCCCCEEEccCCCCCCC-----------------CCccCC--CCCC
Q 047139 139 --------------------NNGFNSTLPHWLFNITNLLSLDLSSNDLQGD-----------------IPDGFS--SLNS 179 (611)
Q Consensus 139 --------------------~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~-----------------~p~~l~--~l~~ 179 (611)
.|.+++ +|..++++++|++|++++|.+++. +|+.++ ++++
T Consensus 172 ~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~ 250 (636)
T 4eco_A 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250 (636)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred ccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC
Confidence 445555 666666666666666666666654 666666 6666
Q ss_pred CCEEEccCCCCCcccccccCCCCCCCCEEEccccc-CCC-ccchhhhcCcccCCCCCCcEEEccCCCCCccCCc--ccCC
Q 047139 180 LQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQ-FSG-EVSDFIDGLSECINSSSLARLELGYNQLTGNLPI--SLGY 255 (611)
Q Consensus 180 L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~--~l~~ 255 (611)
|++|++++|. +.+.+|..++++++|++|++++|+ +++ .+|..++.+.....+++|++|++++|+++ .+|. .+++
T Consensus 251 L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~ 328 (636)
T 4eco_A 251 LTDVEVYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK 328 (636)
T ss_dssp CCEEEEECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred CCEEEecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence 6666666666 455666666666666666666666 666 56666555411112226666666666666 5665 6666
Q ss_pred CCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCC-CCEEEccCCccccccChhhhcCCCCCCE
Q 047139 256 LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSA-IRVLELSDNQWEGFITDAHLRNLTSLEE 334 (611)
Q Consensus 256 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 334 (611)
+++|++|++++|.++|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|. .+..
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~------ 398 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN-IFDA------ 398 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS-CCCT------
T ss_pred CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch-hhhh------
Confidence 6666666666666666666 5666666666666666666 55655666666 666666666655 2332 1111
Q ss_pred EEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhcc-------CCCCCCEEEccCcccccccchhHHhcCCC
Q 047139 335 LSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLR-------NQTELTTLVLNSASISDTLPSWFLQLNLT 407 (611)
Q Consensus 335 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-------~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 407 (611)
..+++|+.|++++|.+.+..|..+. .+++|++|++++|+++ .+|..++..+++
T Consensus 399 -------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~ 458 (636)
T 4eco_A 399 -------------------KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP 458 (636)
T ss_dssp -------------------TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCC
T ss_pred -------------------cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCC
Confidence 1123678888888888888888887 7788999999999988 677777766678
Q ss_pred CCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchh--ccCCCCeEE
Q 047139 408 LDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVG--NLKQLLTLV 485 (611)
Q Consensus 408 L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~ 485 (611)
|++|++++|+++ .+|...... .+..+.+++. |++|++++|.++ .+|..+. .+++|++|+
T Consensus 459 L~~L~Ls~N~l~-~i~~~~~~~---------------~~~~~~~l~~--L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 459 LSSINLMGNMLT-EIPKNSLKD---------------ENENFKNTYL--LTSIDLRFNKLT-KLSDDFRATTLPYLVGID 519 (636)
T ss_dssp CSEEECCSSCCS-BCCSSSSEE---------------TTEECTTGGG--CCEEECCSSCCC-BCCGGGSTTTCTTCCEEE
T ss_pred CCEEECCCCCCC-CcCHHHhcc---------------ccccccccCC--ccEEECcCCcCC-ccChhhhhccCCCcCEEE
Confidence 888888888887 555432110 0000011112 244455777666 5666665 677777777
Q ss_pred CcCCCCCCCCCCcccccCcccccCcCCCCEEEC------cCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcC
Q 047139 486 ISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVL------SNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESM 559 (611)
Q Consensus 486 L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~L------s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l 559 (611)
+++|+++ .+|..++.+++|++|++ ++|++.+.+|..+.++++|++|++++|++ +.+|..+ .
T Consensus 520 Ls~N~l~---------~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~---~ 586 (636)
T 4eco_A 520 LSYNSFS---------KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI---T 586 (636)
T ss_dssp CCSSCCS---------SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC---C
T ss_pred CCCCCCC---------CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH---h
Confidence 7766554 25666666777777777 34555666666666666666666666666 3566553 2
Q ss_pred CCCcEEECcCCcCcc
Q 047139 560 PSLSILRLRSNHFNG 574 (611)
Q Consensus 560 ~~L~~L~ls~n~l~~ 574 (611)
++|++|++++|++..
T Consensus 587 ~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 587 PNISVLDIKDNPNIS 601 (636)
T ss_dssp TTCCEEECCSCTTCE
T ss_pred CcCCEEECcCCCCcc
Confidence 566666666665553
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-53 Score=479.50 Aligned_cols=472 Identities=19% Similarity=0.284 Sum_probs=282.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCC------CCCC--CCc------------ccEEecCCCCcEEEEeCCCCCCCC
Q 047139 37 SGCKEVEREALLQFKQNLTDPSGRLSSWV------GEDC--CSW------------RGVGCNNRTGSIIMLNLNNPFRDS 96 (611)
Q Consensus 37 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~------~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~~ 96 (611)
+++..+|++||++||+++.+| +|. ..+| |.| .||+|+. .+||++|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----- 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----- 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence 445678999999999999887 562 2355 999 9999986 69999999999
Q ss_pred CCcccccccccceeeeCccccCCCCCCEEEC-CCCCCCe-----------------------------------------
Q 047139 97 FDSYEDDAVHELRGKISPSLLQLKDLEYLDL-SLNNFKV----------------------------------------- 134 (611)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l-s~n~l~~----------------------------------------- 134 (611)
+++.|.+|++++++++|++|+| ++|.+..
T Consensus 333 ---------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 333 ---------FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp ---------TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred ---------CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 8999999999999999999999 7664310
Q ss_pred ------------------------EEc--cCCcCccCCCccccCCCCCCEEEccCCCCCC-----------------CCC
Q 047139 135 ------------------------LDL--SNNGFNSTLPHWLFNITNLLSLDLSSNDLQG-----------------DIP 171 (611)
Q Consensus 135 ------------------------L~L--~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~-----------------~~p 171 (611)
+.+ ..|.+++ +|..++++++|++|+|++|.+++ .+|
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 000 1233443 44445555555555555555554 144
Q ss_pred ccCC--CCCCCCEEEccCCCCCcccccccCCCCCCCCEEEccccc-CCC-ccchhhhcCc-ccCCCCCCcEEEccCCCCC
Q 047139 172 DGFS--SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQ-FSG-EVSDFIDGLS-ECINSSSLARLELGYNQLT 246 (611)
Q Consensus 172 ~~l~--~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-~~~~~~~L~~L~Ls~n~l~ 246 (611)
+.++ ++++|++|++++|. +.+.+|..++++++|++|++++|+ +++ .+|..++.++ .+..+++|++|++++|+++
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~-l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCP-NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCT-TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred hhhhhccCCCCCEEECcCCC-CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 4444 45555555555554 344444445555555555555554 444 4444444332 2233334444444444444
Q ss_pred ccCCc--ccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCC-CCEEEccCCccccccCh
Q 047139 247 GNLPI--SLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSA-IRVLELSDNQWEGFITD 323 (611)
Q Consensus 247 ~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~ 323 (611)
.+|. .++++++|++|++++|.++ .+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.+. .+|
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp- 635 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP- 635 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC-
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc-
Confidence 4444 4444444444444444444 444 4444444444444444444 44444444444 444444444443 222
Q ss_pred hhhcCCCCCCEEEcCccCCCCceeeccCCCCCC--cceeEEEecccccCcccchhc---c--CCCCCCEEEccCcccccc
Q 047139 324 AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPP--FKLRYLVIRYYQLGPKFPTWL---R--NQTELTTLVLNSASISDT 396 (611)
Q Consensus 324 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~l---~--~~~~L~~L~l~~n~l~~~ 396 (611)
..+... ++|+.|++++|.+.+.+|... . .+++|+.|++++|.++ .
T Consensus 636 ---------------------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~ 687 (876)
T 4ecn_A 636 ---------------------------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-K 687 (876)
T ss_dssp ---------------------------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-S
T ss_pred ---------------------------hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-c
Confidence 222222 347777777777776555322 2 3357888888888888 6
Q ss_pred cchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchh
Q 047139 397 LPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVG 476 (611)
Q Consensus 397 ~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~ 476 (611)
+|..++..+++|+.|++++|++. .+|...... .+..+.+++.| ++|+|++|+++ .+|..+.
T Consensus 688 lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~---------------~~~~l~nl~~L--~~L~Ls~N~L~-~lp~~l~ 748 (876)
T 4ecn_A 688 FPTELFATGSPISTIILSNNLMT-SIPENSLKP---------------KDGNYKNTYLL--TTIDLRFNKLT-SLSDDFR 748 (876)
T ss_dssp CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC---------------TTSCCTTGGGC--CEEECCSSCCC-CCCGGGS
T ss_pred cCHHHHccCCCCCEEECCCCcCC-ccChHHhcc---------------ccccccccCCc--cEEECCCCCCc-cchHHhh
Confidence 77777766678888888888887 555433210 00001111222 44555777776 5666665
Q ss_pred --ccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcC------CcccccCcccccCCCCCCEEECCCCcCc
Q 047139 477 --NLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSN------NHLSGEIPPSLKNCSLMDSLDLGENQLS 548 (611)
Q Consensus 477 --~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~------n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 548 (611)
.+++|+.|+|++|+++ .+|..++.+++|+.|+|++ |++.+.+|..+.++++|+.|+|++|++
T Consensus 749 ~~~l~~L~~L~Ls~N~L~---------~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFS---------SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp TTTCTTCCEEECCSSCCS---------SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred hccCCCcCEEEeCCCCCC---------ccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 6777777777776654 2566666777777777755 666667777777777777777777777
Q ss_pred ccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcC
Q 047139 549 GNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596 (611)
Q Consensus 549 ~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l 596 (611)
+.+|..+ .++|+.|+|++|++...-+..++....+..+.+.+|++
T Consensus 819 ~~Ip~~l---~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 819 RKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CBCCSCC---CSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CccCHhh---cCCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 4677663 35777777777777765555555554555555555543
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.4e-51 Score=456.81 Aligned_cols=513 Identities=24% Similarity=0.245 Sum_probs=375.7
Q ss_pred CCcccEEecC---------CCCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCC---------
Q 047139 70 CSWRGVGCNN---------RTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNN--------- 131 (611)
Q Consensus 70 c~w~gv~c~~---------~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~--------- 131 (611)
|.++.|.|.. ...+++.|++++ +.+++..+..+.++++|++|++++|.
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 69 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTH--------------NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 69 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCS--------------SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH
T ss_pred eECCeeECCCCCccccccccCCCCcEEECCC--------------CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH
Confidence 4455566642 124677777777 78888777789999999999999885
Q ss_pred -----CCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCC
Q 047139 132 -----FKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQ 206 (611)
Q Consensus 132 -----l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 206 (611)
+++|++++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|. +.+..|..++++++|+
T Consensus 70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQ 148 (680)
T ss_dssp HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCC
T ss_pred hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCC
Confidence 3589999999987666689999999999999999997777889999999999999999 6777788899999999
Q ss_pred EEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCC---------------------------CCC
Q 047139 207 TLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYL---------------------------KNL 259 (611)
Q Consensus 207 ~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l---------------------------~~L 259 (611)
+|++++|.+++..+..+..+. +++|++|++++|.+++..|..+..+ ++|
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L 224 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFA----NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGT----TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred EEEccCCcccccCHHHhhccc----cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence 999999999988887765331 2289999999999998777766543 567
Q ss_pred cEEEccCCcccccCCCCccCccc--CceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEc
Q 047139 260 RYLELWYNSFLGSIPPSLGNLTF--LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSL 337 (611)
Q Consensus 260 ~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 337 (611)
++|++++|.+++..|.++..++. |++|++++|.+++..|..++.+++|++|++++|.+.+..+. .+.++++|+.|++
T Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 303 (680)
T 1ziw_A 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNL 303 (680)
T ss_dssp CEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEEC
T ss_pred cEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEec
Confidence 88888889898888888888765 99999999999988888899999999999999999886665 7899999999999
Q ss_pred CccCCCC------ceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccccccc-chh-HHhc-CCCC
Q 047139 338 IKTSNSS------LSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTL-PSW-FLQL-NLTL 408 (611)
Q Consensus 338 ~~~~~~~------~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-p~~-~~~~-~~~L 408 (611)
+++.... +.......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.... +.. +... .++|
T Consensus 304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L 383 (680)
T 1ziw_A 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383 (680)
T ss_dssp TTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred cchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence 8743211 11111225567889999999999999988888999999999999988754332 221 1111 2478
Q ss_pred CEEEccCcccccccCcccccC-CCceEEccCCcccccCC-CCCCCcceeecCcccCCCCeeecccccchhccCCCCeEEC
Q 047139 409 DELDVGGNHLSGRIPNTLVFR-FPGSVDLSSNRFEGPIP-LWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVI 486 (611)
Q Consensus 409 ~~L~ls~n~l~~~~~~~~~~~-~l~~l~ls~n~~~~~~p-~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 486 (611)
+.|++++|++++..|..+... .++.+++++|.+++.+| ..+..+..| ++|++++|++.+..+..|..+++|++|++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L--~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI--FEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTC--CEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccc--cEEecCCCCcceeChhhhhcCcccccchh
Confidence 888888888887777666544 78888888888877665 344444444 55666777777766677777777777777
Q ss_pred cCCCCC------------------CCCCCcccccCcccccCcCCCCEEECcCCcccccCc--------ccccCCCCCCEE
Q 047139 487 SNNNLS------------------DMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIP--------PSLKNCSLMDSL 540 (611)
Q Consensus 487 ~~n~i~------------------~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L 540 (611)
++|.+. +++.|.+++..|..+..+++|++|++++|++++..+ ..+.++++|++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 776653 223333443333445556666666666666653211 125566666666
Q ss_pred ECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCcccc
Q 047139 541 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVG 605 (611)
Q Consensus 541 ~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~ 605 (611)
++++|+++ .+|...+..+++|++|++++|++++..+..|..+++|++|++++|++++..|..++
T Consensus 542 ~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 542 NLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred ECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 66666666 45554333466666666666666654444556666677777777766666555443
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.1e-51 Score=455.70 Aligned_cols=500 Identities=22% Similarity=0.209 Sum_probs=367.2
Q ss_pred CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCC--------------CeEEccCCcCccCCC
Q 047139 82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNF--------------KVLDLSNNGFNSTLP 147 (611)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l--------------~~L~L~~n~l~~~~p 147 (611)
.+++.|++++ +.+.+..|..+.++++|++|++++|++ ++|++++|.+++..|
T Consensus 49 ~~L~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 49 SQLTSLDVGF--------------NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp TTCSEEECCS--------------SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred CcCcEEECCC--------------CccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh
Confidence 4677788877 677777777888888888888887743 478888888887777
Q ss_pred ccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCC--CCCCCCEEEcccccCCCccchhhhc
Q 047139 148 HWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG--TLCNLQTLKLSLNQFSGEVSDFIDG 225 (611)
Q Consensus 148 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~ 225 (611)
..|+++++|++|++++|.+++..|..++++++|++|++++|. +++..+..+. .+++|++|++++|.+++..|..+..
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 788889999999999998888888888888999999999888 4555555443 5578888888888888777766655
Q ss_pred CcccC---------------------CCCCCcEEEccCCCCCccCCcccCCCCC--CcEEEccCCcccccCCCCccCccc
Q 047139 226 LSECI---------------------NSSSLARLELGYNQLTGNLPISLGYLKN--LRYLELWYNSFLGSIPPSLGNLTF 282 (611)
Q Consensus 226 l~~~~---------------------~~~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~ 282 (611)
+..+. ..++|++|++++|.+++..|..+..++. |++|++++|.+++..|..++.+++
T Consensus 194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273 (680)
T ss_dssp SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc
Confidence 43221 0124455555555555444444444432 555555555555444444555555
Q ss_pred CceEEecCCccccCCCc---------------------------------CCCCCCCCCEEEccCCccccccChhhhcCC
Q 047139 283 LEELYLTSNQMNGKFPE---------------------------------SFGQLSAIRVLELSDNQWEGFITDAHLRNL 329 (611)
Q Consensus 283 L~~L~L~~n~l~~~~~~---------------------------------~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 329 (611)
|++|++++|.+.+..|. .+..+++|++|++++|.+.+..+. .+.++
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l 352 (680)
T 1ziw_A 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGL 352 (680)
T ss_dssp CCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTC
T ss_pred ccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-Hhccc
Confidence 55555555544444333 345556666666666666654333 56667
Q ss_pred CCCCEEEcCccCCCCceeeccCCC--CCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCC
Q 047139 330 TSLEELSLIKTSNSSLSFNISFDW--IPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLT 407 (611)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 407 (611)
++|++|++++|.. .........+ .....|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|...+..+++
T Consensus 353 ~~L~~L~Ls~n~~-~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~ 431 (680)
T 1ziw_A 353 INLKYLSLSNSFT-SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431 (680)
T ss_dssp TTCCEEECTTCBS-CCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT
T ss_pred cCCcEEECCCCch-hhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccc
Confidence 7777777776432 1111111111 122578888888888888888889999999999999999988887555555689
Q ss_pred CCEEEccCcccccccCcccccC-CCceEEccCCccc--ccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeE
Q 047139 408 LDELDVGGNHLSGRIPNTLVFR-FPGSVDLSSNRFE--GPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTL 484 (611)
Q Consensus 408 L~~L~ls~n~l~~~~~~~~~~~-~l~~l~ls~n~~~--~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L 484 (611)
|++|++++|++.+..+..+... .++.+++++|.+. +.+|..+..++.| ++|++++|++++..+..|..+++|++|
T Consensus 432 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L--~~L~Ls~N~l~~i~~~~~~~l~~L~~L 509 (680)
T 1ziw_A 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL--TILDLSNNNIANINDDMLEGLEKLEIL 509 (680)
T ss_dssp CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC--CEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC--CEEECCCCCCCcCChhhhccccccCEE
Confidence 9999999999987777666644 8999999999887 5677777777766 778889999998888889999999999
Q ss_pred ECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcE
Q 047139 485 VISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI 564 (611)
Q Consensus 485 ~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~ 564 (611)
++++|+++.+....+.+..+..+..+++|++|+|++|+++...+..|..+++|+.|++++|+++ .+|...+..+++|++
T Consensus 510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKS 588 (680)
T ss_dssp ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCE
Confidence 9999998866554444444445788999999999999999544457999999999999999999 677766556999999
Q ss_pred EECcCCcCcccCCcccc-CCCCCCEeeccCCcCccCCC
Q 047139 565 LRLRSNHFNGTIPSELC-KLSALHILDLSHNNLLGPIP 601 (611)
Q Consensus 565 L~ls~n~l~~~~p~~l~-~l~~L~~L~ls~n~l~g~iP 601 (611)
|++++|++++..|..+. .+++|+++++++|++....+
T Consensus 589 L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred EECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999988777777 78999999999999988766
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.1e-51 Score=449.63 Aligned_cols=484 Identities=20% Similarity=0.149 Sum_probs=323.6
Q ss_pred cccEEecCC---------CCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcC
Q 047139 72 WRGVGCNNR---------TGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGF 142 (611)
Q Consensus 72 w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l 142 (611)
+..|.|... ...++.|++++ +.+++..|..+.++++|++|++++|+++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~--------------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------- 70 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSF--------------NVLPTIQNTTFSRLINLTFLDLTRCQIY--------- 70 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTT--------------CCCSEECTTTSTTCTTCSEEECTTCCCC---------
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccC--------------CccCcCChhHhccCccceEEECCCCccc---------
Confidence 556777532 23567777777 8898888889999999999999988653
Q ss_pred ccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchh
Q 047139 143 NSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDF 222 (611)
Q Consensus 143 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 222 (611)
+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|+ +.+..+..++++++|++|++++|.+++.....
T Consensus 71 -~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (606)
T 3t6q_A 71 -WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148 (606)
T ss_dssp -EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT
T ss_pred -eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCccc
Confidence 2334445555555555555555554445555555555555555555 33333444555555555555555554432222
Q ss_pred hhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCc--EEEccCCcccccCCCCccC---------------------
Q 047139 223 IDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLR--YLELWYNSFLGSIPPSLGN--------------------- 279 (611)
Q Consensus 223 l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~--------------------- 279 (611)
+..++ +|++|++++|.+++..|..++.+++|+ .|++++|.+++..|..+..
T Consensus 149 ~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 222 (606)
T 3t6q_A 149 GFPTE------KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222 (606)
T ss_dssp TCCCT------TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHT
T ss_pred ccCCc------ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhc
Confidence 22233 555555555555544444455555555 4555555554443333221
Q ss_pred ----------------------------cc--cCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCC
Q 047139 280 ----------------------------LT--FLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329 (611)
Q Consensus 280 ----------------------------l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 329 (611)
+. +|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+
T Consensus 223 ~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-~l~~l 300 (606)
T 3t6q_A 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS-GLVGL 300 (606)
T ss_dssp TTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS-SCCSC
T ss_pred cccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh-hhccc
Confidence 11 5777788888877766666788888888888888876 3555 57778
Q ss_pred CCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccch-hccCCCCCCEEEccCccccccc--chhHHhcCC
Q 047139 330 TSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPT-WLRNQTELTTLVLNSASISDTL--PSWFLQLNL 406 (611)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~ 406 (611)
++|++|++++|.. ....+..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|.+++.. |..+.. ++
T Consensus 301 ~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~ 376 (606)
T 3t6q_A 301 STLKKLVLSANKF---ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN-LS 376 (606)
T ss_dssp TTCCEEECTTCCC---SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT-CT
T ss_pred ccCCEEECccCCc---CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc-CC
Confidence 8888888887433 333344556677888888888877765554 4777888888888888887655 444443 46
Q ss_pred CCCEEEccCcccccccCcccccC-CCceEEccCCcccccCCCC-CCCcceeecCcccCCCCeeecccccchhccCCCCeE
Q 047139 407 TLDELDVGGNHLSGRIPNTLVFR-FPGSVDLSSNRFEGPIPLW-SSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTL 484 (611)
Q Consensus 407 ~L~~L~ls~n~l~~~~~~~~~~~-~l~~l~ls~n~~~~~~p~~-~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L 484 (611)
+|++|++++|++.+..|..+... .++.+++++|.+++..|.. +..+..| ++|++++|.+++..|..+..+++|++|
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL--KVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC--CEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC--CEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 88888888888877777666543 7888888888887765543 5555544 556668888887778888888888888
Q ss_pred ECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcE
Q 047139 485 VISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI 564 (611)
Q Consensus 485 ~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~ 564 (611)
++++|++.+.. -..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+.. ++.| +
T Consensus 455 ~L~~n~l~~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L-~ 527 (606)
T 3t6q_A 455 NLQGNHFPKGN-----IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH-LKGI-Y 527 (606)
T ss_dssp ECTTCBCGGGE-----ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT-CCSC-E
T ss_pred ECCCCCCCccc-----cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc-cccc-E
Confidence 88887664210 012345677888888888888888777888888888888888888888777777765 8888 8
Q ss_pred EECcCCcCcccCCccccCCCCCCEeeccCCcCccCCC
Q 047139 565 LRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601 (611)
Q Consensus 565 L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP 601 (611)
|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus 528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred EECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 8888888887777778888888888888888887665
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.3e-50 Score=443.78 Aligned_cols=465 Identities=20% Similarity=0.164 Sum_probs=391.9
Q ss_pred eeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCC
Q 047139 111 KISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF 190 (611)
Q Consensus 111 ~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~ 190 (611)
.+|..+.. ++++|++++| .+++..|..|.++++|++|++++|.+.+..|.+|+++++|++|++++|+
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n----------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~- 92 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFN----------VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP- 92 (606)
T ss_dssp SCCTTSCT--TCCEEECTTC----------CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-
T ss_pred cCcCCCCC--cCcEEEccCC----------ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc-
Confidence 35554433 4555555555 5556678899999999999999999998899999999999999999999
Q ss_pred CcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCccc
Q 047139 191 LEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFL 270 (611)
Q Consensus 191 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 270 (611)
+.+..|..++++++|++|++++|.+++..+..++.++ +|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK------TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT------TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCC------cccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 6777889999999999999999999988788888777 9999999999999755455556999999999999999
Q ss_pred ccCCCCccCcccCc--eEEecCCccccCCCcCCCCC--------------------------------------------
Q 047139 271 GSIPPSLGNLTFLE--ELYLTSNQMNGKFPESFGQL-------------------------------------------- 304 (611)
Q Consensus 271 ~~~p~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l-------------------------------------------- 304 (611)
+..|..++.+++|+ +|++++|.+++..|..+...
T Consensus 167 ~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChh
Confidence 88888899999999 89999999998776655431
Q ss_pred -------CCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhc
Q 047139 305 -------SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWL 377 (611)
Q Consensus 305 -------~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 377 (611)
.+|+.|++++|.+.+..+ ..++++++|++|++++|... .++..+..+++|++|++++|.+.+..|..+
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISS-NTFHCFSGLQELDLTATHLS----ELPSGLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCT-TTTTTCTTCSEEECTTSCCS----CCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred HhchhhcCceeEEEeecCccCccCH-HHhccccCCCEEeccCCccC----CCChhhcccccCCEEECccCCcCcCchhhh
Confidence 157788888888876444 47899999999999996542 456667778899999999999998888899
Q ss_pred cCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCccccccc--CcccccC-CCceEEccCCcccccCCCCCCCcce
Q 047139 378 RNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRI--PNTLVFR-FPGSVDLSSNRFEGPIPLWSSNLTK 454 (611)
Q Consensus 378 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~~-~l~~l~ls~n~~~~~~p~~~~~l~~ 454 (611)
..+++|++|++++|.+.+.+|......+++|++|++++|++.+.. +..+... .++.+++++|.+.+..|..+..+..
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 999999999999999988887765555689999999999998765 5555543 8999999999999888888777765
Q ss_pred eecCcccCCCCeeecccccc-hhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc---Cccc
Q 047139 455 LYLRDLDISFNSINGSIPQS-VGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE---IPPS 530 (611)
Q Consensus 455 L~l~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~---~p~~ 530 (611)
| ++|++++|.+.+..+.. +..+++|++|++++|.+. +..|..+..+++|++|++++|++++. .+..
T Consensus 402 L--~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (606)
T 3t6q_A 402 L--ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD--------ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471 (606)
T ss_dssp C--SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB--------TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG
T ss_pred C--CeEECCCCcCCCcccchhhhCcccCCEEECCCCccC--------CcCHHHHhCCCCCCEEECCCCCCCccccccchh
Confidence 5 77888999999876654 889999999999988765 34566777899999999999999873 3367
Q ss_pred ccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCccccccCCC
Q 047139 531 LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAM 610 (611)
Q Consensus 531 l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~~l 610 (611)
+..+++|+.|++++|++++..|..+.. +++|++|++++|++++..|+.+.+++.| +|++++|++++.+|..++.+++|
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L 549 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSIDQHAFTS-LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ 549 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTS
T ss_pred hccCCCccEEECCCCccCccChhhhcc-ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCC
Confidence 899999999999999999877877775 9999999999999999999999999999 99999999999988888777665
Q ss_pred C
Q 047139 611 T 611 (611)
Q Consensus 611 ~ 611 (611)
+
T Consensus 550 ~ 550 (606)
T 3t6q_A 550 R 550 (606)
T ss_dssp S
T ss_pred C
Confidence 3
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-49 Score=439.64 Aligned_cols=478 Identities=19% Similarity=0.140 Sum_probs=343.5
Q ss_pred CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCC--------------eEEccCCcCccCCC
Q 047139 82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFK--------------VLDLSNNGFNSTLP 147 (611)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~--------------~L~L~~n~l~~~~p 147 (611)
.+++.|++++ +.+.+..+..+.++++|++|++++|+++ +|++++|.+++..|
T Consensus 32 ~~l~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p 97 (606)
T 3vq2_A 32 SSTKNIDLSF--------------NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97 (606)
T ss_dssp TTCCEEECTT--------------SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred CCcCEEECCC--------------CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh
Confidence 4677888887 8888888889999999999999988553 55555555555555
Q ss_pred ccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCc
Q 047139 148 HWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLS 227 (611)
Q Consensus 148 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 227 (611)
..|+++++|++|++++|.+++..|..++++++|++|++++|.+....+|..++++++|++|++++|.+++..+..++.+.
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 55666666666666666655444455566666666666666532234555566666666666666665555555544443
Q ss_pred ccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCccc-ccCCCCccCcccCceEEe------------------
Q 047139 228 ECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFL-GSIPPSLGNLTFLEELYL------------------ 288 (611)
Q Consensus 228 ~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L------------------ 288 (611)
.+.. .+++|++++|.+++..+..+... +|++|++++|.+. +..|..+.++++|+.+++
T Consensus 178 ~L~~--~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~ 254 (606)
T 3vq2_A 178 ENPQ--VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254 (606)
T ss_dssp HCTT--CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred cccc--ccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHH
Confidence 1100 13356666666554333333322 5666666665554 123333333443333333
Q ss_pred ---------------cCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCC
Q 047139 289 ---------------TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDW 353 (611)
Q Consensus 289 ---------------~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 353 (611)
..+.+.+.+|. +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.. ..++ .+
T Consensus 255 ~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~--~l~~~~~L~~L~l~~n~l----~~lp-~~ 325 (606)
T 3vq2_A 255 MEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE--DVPKHFKWQSLSIIRCQL----KQFP-TL 325 (606)
T ss_dssp GTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC--CCCTTCCCSEEEEESCCC----SSCC-CC
T ss_pred hhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh--hccccccCCEEEcccccC----cccc-cC
Confidence 33444555555 7778889999999998865 44 578888999999998544 3334 34
Q ss_pred CCCcceeEEEecccccCcccchhccCCCCCCEEEccCccccccc--chhHHhcCCCCCEEEccCcccccccCccccc-CC
Q 047139 354 IPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTL--PSWFLQLNLTLDELDVGGNHLSGRIPNTLVF-RF 430 (611)
Q Consensus 354 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~ 430 (611)
.+++|+.|++++|...+.+ .+..+++|++|++++|.+++.. |..+.. +++|++|++++|.+.+ +|..+.. ..
T Consensus 326 -~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~-~~~~~~~l~~ 400 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII-MSANFMGLEE 400 (606)
T ss_dssp -CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEECCSCSEEE-ECCCCTTCTT
T ss_pred -CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhcc-CCcccEeECCCCcccc-chhhccCCCC
Confidence 7789999999999655444 5678899999999999988763 666554 5799999999999885 4444443 48
Q ss_pred CceEEccCCcccccCC-CCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccc-cCccccc
Q 047139 431 PGSVDLSSNRFEGPIP-LWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSG-EIPESIG 508 (611)
Q Consensus 431 l~~l~ls~n~~~~~~p-~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g-~ip~~~~ 508 (611)
++.+++++|.+.+..| ..+..+..| ++|++++|.+++..|..+..+++|++|++++|+++ + .+|..++
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~ 470 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKL--LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK--------DNTLSNVFA 470 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTC--CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG--------GGEECSCCT
T ss_pred CCeeECCCCccCCccChhhhhccccC--CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC--------CcchHHhhc
Confidence 9999999999998877 566666655 66777999999999999999999999999887654 4 3677888
Q ss_pred CcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCC-CCC
Q 047139 509 SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLS-ALH 587 (611)
Q Consensus 509 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~-~L~ 587 (611)
.+++|++|++++|++++..|..+..+++|++|++++|++++.+|..+.. +++|++|++++|+++ .+|..+..++ +|+
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ-LYSLSTLDCSFNRIE-TSKGILQHFPKSLA 548 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT-CTTCCEEECTTSCCC-CEESCGGGSCTTCC
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC-CCcCCEEECCCCcCc-ccCHhHhhhcccCc
Confidence 8999999999999999988999999999999999999999888888776 999999999999999 6888888886 599
Q ss_pred EeeccCCcCccCCCc
Q 047139 588 ILDLSHNNLLGPIPY 602 (611)
Q Consensus 588 ~L~ls~n~l~g~iP~ 602 (611)
+|++++|++.+..|.
T Consensus 549 ~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 549 FFNLTNNSVACICEH 563 (606)
T ss_dssp EEECCSCCCCCSSTT
T ss_pred EEEccCCCcccCCcc
Confidence 999999999887663
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-48 Score=431.69 Aligned_cols=458 Identities=22% Similarity=0.207 Sum_probs=334.6
Q ss_pred ccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 047139 106 HELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL 185 (611)
Q Consensus 106 ~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L 185 (611)
.+++ .+|..+. +++++|++++|++ ++..+..|.++++|++|++++|.+++..|.+|+++++|++|++
T Consensus 21 ~~l~-~ip~~~~--~~l~~L~Ls~n~l----------~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 21 QKLS-KVPDDIP--SSTKNIDLSFNPL----------KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp SCCS-SCCTTSC--TTCCEEECTTSCC----------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcc-cCCCCCC--CCcCEEECCCCCc----------CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence 4444 3454443 6677777766654 4455667777888888888888887777777888888888888
Q ss_pred cCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCc-cCCcccCCCCCCcEEEc
Q 047139 186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLEL 264 (611)
Q Consensus 186 s~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L 264 (611)
++|. +.+..|..++++++|++|++++|.+++..+..++.++ +|++|++++|.+++ .+|..++++++|++|++
T Consensus 88 s~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 88 TGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI------TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp TTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT------TCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred CCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCC------CCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 8887 5566677788888888888888887777666677666 78888888888775 56777888888888888
Q ss_pred cCCcccccCCCCccCcccCc----eEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhh---------------
Q 047139 265 WYNSFLGSIPPSLGNLTFLE----ELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAH--------------- 325 (611)
Q Consensus 265 ~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--------------- 325 (611)
++|.+++..|..++.+++|+ +|++++|.+++..+..+.. .+|++|++++|.+.+......
T Consensus 161 s~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~ 239 (606)
T 3vq2_A 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239 (606)
T ss_dssp CSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred cCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhcccccccccccccc
Confidence 88887777777777666654 6788888777554444443 377777777776653222223
Q ss_pred -----------------------------------------hcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEe
Q 047139 326 -----------------------------------------LRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVI 364 (611)
Q Consensus 326 -----------------------------------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 364 (611)
+..+++|+.|+++++.... ++ .+..+++|+.|++
T Consensus 240 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----l~-~l~~~~~L~~L~l 314 (606)
T 3vq2_A 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY----LE-DVPKHFKWQSLSI 314 (606)
T ss_dssp CCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC----CC-CCCTTCCCSEEEE
T ss_pred ccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh----hh-hccccccCCEEEc
Confidence 3445555666665533321 12 4445567777777
Q ss_pred cccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccc--cCcccccC-CCceEEccCCcc
Q 047139 365 RYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGR--IPNTLVFR-FPGSVDLSSNRF 441 (611)
Q Consensus 365 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~~-~l~~l~ls~n~~ 441 (611)
++|.+ +.+|.+ .+++|++|++++|...+..+. . .+++|++|++++|++++. +|..+... .++.+++++|.+
T Consensus 315 ~~n~l-~~lp~~--~l~~L~~L~l~~n~~~~~~~~--~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 388 (606)
T 3vq2_A 315 IRCQL-KQFPTL--DLPFLKSLTLTMNKGSISFKK--V-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388 (606)
T ss_dssp ESCCC-SSCCCC--CCSSCCEEEEESCSSCEECCC--C-CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE
T ss_pred ccccC-cccccC--CCCccceeeccCCcCccchhh--c-cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc
Confidence 77777 566633 777777777777755444321 1 346788888888887765 25554433 788888888887
Q ss_pred cccCCCCCCCcceeecCcccCCCCeeecccc-cchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcC
Q 047139 442 EGPIPLWSSNLTKLYLRDLDISFNSINGSIP-QSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSN 520 (611)
Q Consensus 442 ~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~ 520 (611)
++ +|..+..+..| ++|++++|.+.+..| ..+..+++|++|++++|++ .+.+|..++.+++|++|++++
T Consensus 389 ~~-~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 389 II-MSANFMGLEEL--QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT--------KIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp EE-ECCCCTTCTTC--CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC--------EECCTTTTTTCTTCCEEECTT
T ss_pred cc-chhhccCCCCC--CeeECCCCccCCccChhhhhccccCCEEECcCCCC--------CccchhhhcCCCCCCEEECCC
Confidence 75 44555555554 667778888887777 6788888888888887765 446677788899999999999
Q ss_pred Ccccc-cCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccC
Q 047139 521 NHLSG-EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGP 599 (611)
Q Consensus 521 n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~ 599 (611)
|++++ .+|..+..+++|++|++++|++++..|..+.. +++|++|++++|++++.+|..+..+++|++|++++|+++ .
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~ 535 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT-LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-T 535 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-C
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc-cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-c
Confidence 99998 47889999999999999999999877877765 999999999999999999999999999999999999998 7
Q ss_pred CCccccccC
Q 047139 600 IPYCVGDFS 608 (611)
Q Consensus 600 iP~~~~~~~ 608 (611)
+|..+..++
T Consensus 536 ~p~~~~~l~ 544 (606)
T 3vq2_A 536 SKGILQHFP 544 (606)
T ss_dssp EESCGGGSC
T ss_pred cCHhHhhhc
Confidence 888787765
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-48 Score=440.29 Aligned_cols=488 Identities=21% Similarity=0.246 Sum_probs=316.7
Q ss_pred CCcccEEecCCCCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCC---------------CCCe
Q 047139 70 CSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLN---------------NFKV 134 (611)
Q Consensus 70 c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n---------------~l~~ 134 (611)
|.|.+|-+ ...+++.|++++ +.+++..+..+.++++|++|++++| ++++
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~--------------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~ 77 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSF--------------NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI 77 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEES--------------CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred CCCCCCCC--CCCCcCEEECCC--------------CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence 45666665 456888888888 8899888999999999999999988 2457
Q ss_pred EEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCcc--CCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEccc
Q 047139 135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDG--FSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSL 212 (611)
Q Consensus 135 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~--l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~ 212 (611)
|+|++|.+++..|..|.++++|++|++++|.+++.+|.. ++++++|++|++++|.+.....+..++++++|++|++++
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 888888888777888888888888888888887766654 788888888888888743322335678888888888888
Q ss_pred ccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCC------CcEEEccCCcccccCCCCccC-------
Q 047139 213 NQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN------LRYLELWYNSFLGSIPPSLGN------- 279 (611)
Q Consensus 213 n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~------- 279 (611)
|.+++..+..+..+.. ++|+.|++++|.+.+..|..+..+++ |++|++++|.+++..|..+..
T Consensus 158 N~i~~~~~~~l~~l~~----~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQG----KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp SCCCCCCSGGGHHHHH----CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred CcCCeeCHHHcccccC----CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 8888777777766510 17888888888888777777666655 888888888776655544332
Q ss_pred -------------------------------cccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcC
Q 047139 280 -------------------------------LTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRN 328 (611)
Q Consensus 280 -------------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~ 328 (611)
.++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+.+
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~ 312 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYG 312 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTTT
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH-HhcC
Confidence 14566666666666655566666666666666666666654443 5666
Q ss_pred CCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCC
Q 047139 329 LTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTL 408 (611)
Q Consensus 329 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L 408 (611)
+++|++|++++|. +....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. +. .++|
T Consensus 313 l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~-----~~~L 383 (844)
T 3j0a_A 313 LDNLQVLNLSYNL---LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF-----IPSI 383 (844)
T ss_dssp CSSCCEEEEESCC---CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS-----CCSC
T ss_pred CCCCCEEECCCCC---CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC-----CCCc
Confidence 6666666666632 2233334445555666666666666555555566666666666666666532 21 3556
Q ss_pred CEEEccCcccccccCcccccCCCceEEccCCcccccCCC-CCCCcceeecCcccCCCCeeeccccc-chhccCCCCeEEC
Q 047139 409 DELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPL-WSSNLTKLYLRDLDISFNSINGSIPQ-SVGNLKQLLTLVI 486 (611)
Q Consensus 409 ~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~-~~~~l~~L~l~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L 486 (611)
+.+++++|+++ .+|.. ...++.+++++|++++.... .+..+..| ++|++++|++++..+. .+..+++|++|++
T Consensus 384 ~~L~l~~N~l~-~l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L--~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 458 (844)
T 3j0a_A 384 PDIFLSGNKLV-TLPKI--NLTANLIHLSENRLENLDILYFLLRVPHL--QILILNQNRFSSCSGDQTPSENPSLEQLFL 458 (844)
T ss_dssp SEEEEESCCCC-CCCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTC--CEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred chhccCCCCcc-ccccc--ccccceeecccCccccCchhhhhhcCCcc--ceeeCCCCcccccccccccccCCccccccC
Confidence 66666666665 33332 22456666666666543111 11122222 3344466666643332 2344566667776
Q ss_pred cCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEE
Q 047139 487 SNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILR 566 (611)
Q Consensus 487 ~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ 566 (611)
++|.++.+.. .+..|..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++ +|...+ .++|+.|+
T Consensus 459 s~N~l~~~~~---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~--~~~L~~L~ 532 (844)
T 3j0a_A 459 GENMLQLAWE---TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDL--PANLEILD 532 (844)
T ss_dssp ESCCCSSSCC---SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCC--CSCCCEEE
T ss_pred CCCccccccc---cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhh--hccccEEE
Confidence 6666553221 12334455667777777777777777767777777777777777777774 333322 26777777
Q ss_pred CcCCcCcccCCccccCCCCCCEeeccCCcCccCCC
Q 047139 567 LRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601 (611)
Q Consensus 567 ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP 601 (611)
+++|++++.+|..+ .+|+.|++++|++....+
T Consensus 533 Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 533 ISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred CCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 77777777776554 367777777777766544
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.9e-47 Score=415.25 Aligned_cols=479 Identities=21% Similarity=0.221 Sum_probs=381.1
Q ss_pred CCCcccEEecCCC-----------CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEc
Q 047139 69 CCSWRGVGCNNRT-----------GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDL 137 (611)
Q Consensus 69 ~c~w~gv~c~~~~-----------~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L 137 (611)
.|.|.|+ |+... .+++.|++++ +.+++..|..+..+++|++|++++|+++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---- 63 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF--------------NKITYIGHGDLRACANLQVLILKSSRIN---- 63 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS--------------SCCCEECSSTTSSCTTCCEEECTTSCCC----
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcC--------------CccCccChhhhhcCCcccEEECCCCCcC----
Confidence 4889888 86432 2566666666 8888888888999999998888877664
Q ss_pred cCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCC
Q 047139 138 SNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG 217 (611)
Q Consensus 138 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 217 (611)
+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+.....|..++++++|++|++++|.+.+
T Consensus 64 ------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~ 137 (549)
T 2z81_A 64 ------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137 (549)
T ss_dssp ------EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred ------ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc
Confidence 55677899999999999999999988787899999999999999995333567889999999999999998544
Q ss_pred cc-chhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCC-ccCcccCceEEecCCcccc
Q 047139 218 EV-SDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS-LGNLTFLEELYLTSNQMNG 295 (611)
Q Consensus 218 ~~-~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~ 295 (611)
.+ +..+..++ +|++|++++|.+++..|..+..+++|++|++++|.+. .+|.+ +..+++|++|++++|.+++
T Consensus 138 ~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 138 EIRRIDFAGLT------SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EECTTTTTTCC------EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccCHhhhhccc------ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence 44 46777777 9999999999999999999999999999999999876 44444 3568999999999999987
Q ss_pred CC--C-cCCCCCCCCCEEEccCCccccccChh---hhcCCCCCCEEEcCccCCCCceee---ccCCCCCCcceeEEEecc
Q 047139 296 KF--P-ESFGQLSAIRVLELSDNQWEGFITDA---HLRNLTSLEELSLIKTSNSSLSFN---ISFDWIPPFKLRYLVIRY 366 (611)
Q Consensus 296 ~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~L~~L~l~~ 366 (611)
.. | .....+++|+.|++++|.+.+..+.. .+..+++|+.+++++|........ .........+++.+.+.+
T Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 290 (549)
T 2z81_A 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290 (549)
T ss_dssp CCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEES
T ss_pred ccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccc
Confidence 42 2 22346789999999999988754432 346788999999998644222111 112234567899999988
Q ss_pred cccCcc-----cchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcc---cc-cCCCceEEcc
Q 047139 367 YQLGPK-----FPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNT---LV-FRFPGSVDLS 437 (611)
Q Consensus 367 ~~l~~~-----~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~---~~-~~~l~~l~ls 437 (611)
+.+... ++..+...++|++|++++|++. .+|..++..+++|++|++++|++++.+|.. +. ...++.|+++
T Consensus 291 ~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls 369 (549)
T 2z81_A 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369 (549)
T ss_dssp CBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECT
T ss_pred cccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEcc
Confidence 876532 2333455689999999999986 788888766789999999999999876532 33 2489999999
Q ss_pred CCcccccCC--CCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCE
Q 047139 438 SNRFEGPIP--LWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRF 515 (611)
Q Consensus 438 ~n~~~~~~p--~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~ 515 (611)
+|++++..+ ..+..+..| ++|++++|+++ .+|..+..+++|++|++++|+++.+. +.+| ++|++
T Consensus 370 ~N~l~~~~~~~~~~~~l~~L--~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-----~~~~------~~L~~ 435 (549)
T 2z81_A 370 QNHLRSMQKTGEILLTLKNL--TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-----TCIP------QTLEV 435 (549)
T ss_dssp TSCCCCHHHHHHHGGGCTTC--CEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-----TTSC------TTCSE
T ss_pred CCcccccccchhhhhcCCCC--CEEECCCCCCc-cCChhhcccccccEEECCCCCccccc-----chhc------CCceE
Confidence 999976432 223344433 55666999998 68888999999999999999987433 2232 48999
Q ss_pred EECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCc
Q 047139 516 LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNN 595 (611)
Q Consensus 516 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~ 595 (611)
|++++|++++.+ ..+++|++|++++|+++ .+|.. . .+++|++|++++|++++..|..+..+++|++|++++|+
T Consensus 436 L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~-~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 436 LDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDA-S-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp EECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCG-G-GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EECCCCChhhhc----ccCChhcEEECCCCccC-cCCCc-c-cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 999999999653 57899999999999999 78874 3 39999999999999999888889999999999999999
Q ss_pred CccCCC
Q 047139 596 LLGPIP 601 (611)
Q Consensus 596 l~g~iP 601 (611)
+.+.+|
T Consensus 509 ~~~~~~ 514 (549)
T 2z81_A 509 WDCSCP 514 (549)
T ss_dssp BCCCHH
T ss_pred ccCCCc
Confidence 999888
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-46 Score=411.09 Aligned_cols=424 Identities=23% Similarity=0.229 Sum_probs=268.0
Q ss_pred CccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcC
Q 047139 147 PHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGL 226 (611)
Q Consensus 147 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 226 (611)
+..|.++++|++|++++|++++..|..|+++++|++|++++|+ +.+..|..|+++++|++|++++|.+++..+..++.+
T Consensus 45 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 123 (570)
T 2z63_A 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123 (570)
T ss_dssp TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccccccCCCcccccc
Confidence 3344444444445554444444444444444444555544444 233333444444444445444444444333333333
Q ss_pred cccCCCCCCcEEEccCCCCCc-cCCcccCCCCCCcEEEccCCcccccCCCCccCcccC----ceEEecCCccccCCCcCC
Q 047139 227 SECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFL----EELYLTSNQMNGKFPESF 301 (611)
Q Consensus 227 ~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~~~~l 301 (611)
+ +|++|++++|.+++ .+|..++++++|++|++++|.+++..|..++.+++| +++++++|.+.+..|..+
T Consensus 124 ~------~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~ 197 (570)
T 2z63_A 124 K------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (570)
T ss_dssp T------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred c------cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHh
Confidence 3 44444444444443 234444444444445444444444444444444444 444444444444433333
Q ss_pred CCCCCCCEEEccCC----------------------------------------------------------ccccccCh
Q 047139 302 GQLSAIRVLELSDN----------------------------------------------------------QWEGFITD 323 (611)
Q Consensus 302 ~~l~~L~~L~L~~n----------------------------------------------------------~l~~~~~~ 323 (611)
... +|+.|++++| .+.+..+.
T Consensus 198 ~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 198 KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp TTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred ccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence 332 3444444443 33333333
Q ss_pred hhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHh
Q 047139 324 AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQ 403 (611)
Q Consensus 324 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~ 403 (611)
.+..+++|++|++++|... .++...... +|+.|++++|.+. .+|. ..+++|++|++++|.+.+..+. .
T Consensus 277 -~~~~l~~L~~L~l~~~~l~----~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~---~ 344 (570)
T 2z63_A 277 -LFNCLTNVSSFSLVSVTIE----RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE---V 344 (570)
T ss_dssp -TTGGGTTCSEEEEESCEEC----SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC---C
T ss_pred -hhcCcCcccEEEecCccch----hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc---c
Confidence 5666777777777774332 334444445 7777777777766 4444 3667778888888877766655 3
Q ss_pred cCCCCCEEEccCccccccc--Cccccc-CCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccc-cchhccC
Q 047139 404 LNLTLDELDVGGNHLSGRI--PNTLVF-RFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIP-QSVGNLK 479 (611)
Q Consensus 404 ~~~~L~~L~ls~n~l~~~~--~~~~~~-~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~-~~l~~l~ 479 (611)
.+++|++|++++|++++.. +..+.. ..++.+++++|.+++..+. +..+..| ++|++++|.+.+..| ..+.+++
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L--~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQL--EHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTC--CEEECTTSEEESCTTSCTTTTCT
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCC--CEEEccCCccccccchhhhhcCC
Confidence 4577888888888877543 333333 3788888888887765443 4444433 566668888887665 4678888
Q ss_pred CCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccc-ccCcccccCCCCCCEEECCCCcCcccChhHHhhc
Q 047139 480 QLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS-GEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGES 558 (611)
Q Consensus 480 ~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~ 558 (611)
+|++|++++|++. +.+|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..
T Consensus 422 ~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~- 492 (570)
T 2z63_A 422 NLIYLDISHTHTR--------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS- 492 (570)
T ss_dssp TCCEEECTTSCCE--------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-
T ss_pred CCCEEeCcCCccc--------ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc-
Confidence 8888888877654 456677778999999999999997 578899999999999999999999877887775
Q ss_pred CCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCc
Q 047139 559 MPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPY 602 (611)
Q Consensus 559 l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~ 602 (611)
+++|++|++++|++++..|..+.++++|++|++++|++++.+|.
T Consensus 493 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999999988888889999999999999999999885
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-44 Score=396.54 Aligned_cols=442 Identities=21% Similarity=0.240 Sum_probs=329.8
Q ss_pred CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEc
Q 047139 82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDL 161 (611)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 161 (611)
.+++.|++++ +.+++..+.++..+++|++|++++|+++ +..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----------~i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 28 FSTKNLDLSF--------------NPLRHLGSYSFFSFPELQVLDLSRCEIQ----------TIEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp SSCCEEECCS--------------CCCCEECTTTTTTCSSCCEEECTTCCCC----------EECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccC--------------CccCccChhHhhCCCCceEEECCCCcCC----------ccCcccccCchhCCEEeC
Confidence 4677888887 7888888889999999999999888654 233445556666666666
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCC-ccchhhhcCcccCCCCCCcEEEc
Q 047139 162 SSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG-EVSDFIDGLSECINSSSLARLEL 240 (611)
Q Consensus 162 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~~~~~~~L~~L~L 240 (611)
++|.+++..|..|+++++|++|++++|. +.+..+..++++++|++|++++|.+++ .+|..++.++ +|++|++
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~------~L~~L~l 156 (570)
T 2z63_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------NLEHLDL 156 (570)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT------TCCEEEC
T ss_pred cCCcCCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccC------CCCEEeC
Confidence 6666655555556666666666666665 333222345566666666666666555 2455555555 6666666
Q ss_pred cCCCCCccCCcccCCCCCC----cEEEccCCcccccCCCCccCcccCceEEecCC-------------------------
Q 047139 241 GYNQLTGNLPISLGYLKNL----RYLELWYNSFLGSIPPSLGNLTFLEELYLTSN------------------------- 291 (611)
Q Consensus 241 s~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n------------------------- 291 (611)
++|++++..+..++.+++| +++++++|.+.+..|..+... +|++|++++|
T Consensus 157 ~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 235 (570)
T 2z63_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235 (570)
T ss_dssp TTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred cCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccc
Confidence 6666665555555555555 556666666655544444333 4555555444
Q ss_pred ---------------------------------ccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcC
Q 047139 292 ---------------------------------QMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLI 338 (611)
Q Consensus 292 ---------------------------------~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 338 (611)
.+.+..|..+..+++|++|++++|.+.+ +|. .+..+ +|++|+++
T Consensus 236 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~-~L~~L~l~ 312 (570)
T 2z63_A 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD-FSYNF-GWQHLELV 312 (570)
T ss_dssp ECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCB-CCSCC-CCSEEEEE
T ss_pred cccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhh-hhccC-CccEEeec
Confidence 5556677788889999999999999875 665 56777 99999999
Q ss_pred ccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccccccc--chhHHhcCCCCCEEEccCc
Q 047139 339 KTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTL--PSWFLQLNLTLDELDVGGN 416 (611)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~~L~~L~ls~n 416 (611)
+|... .++. ..+++|+.|++.+|.+.+..+. ..+++|++|++++|.+++.. |..+.. +++|++|++++|
T Consensus 313 ~n~~~----~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n 383 (570)
T 2z63_A 313 NCKFG----QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFN 383 (570)
T ss_dssp SCBCS----SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECCSC
T ss_pred cCccc----ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccc-cCccCEEECCCC
Confidence 96553 2222 3567999999999998877665 78899999999999998664 666665 589999999999
Q ss_pred ccccccCcccc-cCCCceEEccCCcccccCC-CCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCC
Q 047139 417 HLSGRIPNTLV-FRFPGSVDLSSNRFEGPIP-LWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDM 494 (611)
Q Consensus 417 ~l~~~~~~~~~-~~~l~~l~ls~n~~~~~~p-~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l 494 (611)
.+.+..+. +. ...++.+++++|.+.+..| ..+..++.| ++|++++|.+.+..|..+..+++|++|++++|++.
T Consensus 384 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 458 (570)
T 2z63_A 384 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ-- 458 (570)
T ss_dssp SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC--CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG--
T ss_pred cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC--CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc--
Confidence 99876555 44 3489999999999998766 345666655 66777999999999999999999999999988653
Q ss_pred CCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcc
Q 047139 495 TNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG 574 (611)
Q Consensus 495 ~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~ 574 (611)
.+.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.. +++|++|++++|++++
T Consensus 459 -----~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 459 -----ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR-LTSLQKIWLHTNPWDC 532 (570)
T ss_dssp -----GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSCBCC
T ss_pred -----cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc-ccCCcEEEecCCcccC
Confidence 1468888999999999999999999988999999999999999999999766655554 9999999999999998
Q ss_pred cCCc
Q 047139 575 TIPS 578 (611)
Q Consensus 575 ~~p~ 578 (611)
..|.
T Consensus 533 ~~~~ 536 (570)
T 2z63_A 533 SCPR 536 (570)
T ss_dssp CTTT
T ss_pred CCcc
Confidence 8774
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.5e-46 Score=401.71 Aligned_cols=447 Identities=20% Similarity=0.232 Sum_probs=367.4
Q ss_pred ccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 047139 106 HELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL 185 (611)
Q Consensus 106 ~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L 185 (611)
++++ .+|..+. ++|++|++++|++ ++..|..|.++++|++|++++|++++..|..|+++++|++|++
T Consensus 10 n~l~-~ip~~~~--~~L~~L~Ls~n~i----------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 10 NGLI-HVPKDLS--QKTTILNISQNYI----------SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp SCCS-SCCCSCC--TTCSEEECCSSCC----------CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred CCcc-ccccccc--ccccEEECCCCcc----------cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 6777 4676665 6777777666654 5566678999999999999999999888999999999999999
Q ss_pred cCCCCCcccccccCCCCCCCCEEEcccccCCC-ccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCC--cEE
Q 047139 186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSG-EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNL--RYL 262 (611)
Q Consensus 186 s~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L 262 (611)
++|++ + .+|.. .+++|++|++++|.+++ .+|..++.++ +|++|++++|.+++ ..+..+++| ++|
T Consensus 77 s~N~l-~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~------~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 77 SHNKL-V-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS------QLKFLGLSTTHLEK---SSVLPIAHLNISKV 143 (520)
T ss_dssp CSSCC-C-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT------TCCEEEEEESSCCG---GGGGGGTTSCEEEE
T ss_pred CCCce-e-ecCcc--ccCCccEEeccCCccccccchhhhccCC------cceEEEecCcccch---hhccccccceeeEE
Confidence 99995 4 57766 89999999999999998 5788999888 99999999999986 456667777 999
Q ss_pred EccCCcc--cccCCCCccCcc-cCceEEecCCccccCCCc-CCCCCCCCCEEEccCCc-------cccccChhhhcCCCC
Q 047139 263 ELWYNSF--LGSIPPSLGNLT-FLEELYLTSNQMNGKFPE-SFGQLSAIRVLELSDNQ-------WEGFITDAHLRNLTS 331 (611)
Q Consensus 263 ~L~~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~~l~~l~~ 331 (611)
++++|.+ .+..|..+..++ +...+++++|.+.+.++. .+..+++|+.+++++|. +.+.++ .+..+++
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~ 221 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPK 221 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTT
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccc
Confidence 9999999 788888887765 344678888888776654 56789999999999997 666554 5889999
Q ss_pred CCEEEcCccCCCCceeeccCC---CCCCcceeEEEecccccCcccchhc-----cCCCCCCEEEccCcccccccc-hhHH
Q 047139 332 LEELSLIKTSNSSLSFNISFD---WIPPFKLRYLVIRYYQLGPKFPTWL-----RNQTELTTLVLNSASISDTLP-SWFL 402 (611)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~p-~~~~ 402 (611)
|+.|+++++.. .+..... .....+|+.|++++|.+.+.+|.++ ..+++|+.+++++|.+ .+| .++.
T Consensus 222 L~~L~l~~~~l---~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~ 296 (520)
T 2z7x_B 222 LSNLTLNNIET---TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIY 296 (520)
T ss_dssp CCEEEEEEEEE---EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHH
T ss_pred hhhcccccccc---CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhh
Confidence 99999988432 2211111 1113489999999999999999998 8999999999999999 666 4554
Q ss_pred hcC--CCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeec--ccccchhcc
Q 047139 403 QLN--LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSING--SIPQSVGNL 478 (611)
Q Consensus 403 ~~~--~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~--~~~~~l~~l 478 (611)
... .+|+.|++++|++.+.. .......++.+++++|++++.+|..+..+..| ++|++++|++++ .+|..+..+
T Consensus 297 ~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~L~~N~l~~l~~~~~~~~~l 373 (520)
T 2z7x_B 297 EIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL--ETLILQMNQLKELSKIAEMTTQM 373 (520)
T ss_dssp HHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC--CEEECCSSCCCBHHHHHHHHTTC
T ss_pred cccccCceeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCCC--CEEEccCCccCccccchHHHhhC
Confidence 432 47999999999987432 11223479999999999999899888777765 778889999997 667889999
Q ss_pred CCCCeEECcCCCCCCCCCCcccccCccc-ccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhh
Q 047139 479 KQLLTLVISNNNLSDMTNNNFSGEIPES-IGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGE 557 (611)
Q Consensus 479 ~~L~~L~L~~n~i~~l~~n~~~g~ip~~-~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 557 (611)
++|++|++++|+++. .+|.. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|.+++.
T Consensus 374 ~~L~~L~Ls~N~l~~--------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~ 442 (520)
T 2z7x_B 374 KSLQQLDISQNSVSY--------DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK 442 (520)
T ss_dssp TTCCEEECCSSCCBC--------CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred CCCCEEECCCCcCCc--------ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence 999999999988763 35543 56689999999999999988887765 79999999999999 89998885
Q ss_pred cCCCCcEEECcCCcCcccCCcc-ccCCCCCCEeeccCCcCccCCC
Q 047139 558 SMPSLSILRLRSNHFNGTIPSE-LCKLSALHILDLSHNNLLGPIP 601 (611)
Q Consensus 558 ~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~ls~n~l~g~iP 601 (611)
+++|++|++++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus 443 -l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 443 -LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp -CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -CCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999999999999 57765 8899999999999999998765
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-44 Score=413.37 Aligned_cols=447 Identities=23% Similarity=0.230 Sum_probs=348.3
Q ss_pred CCCeEEccCCcCccCC-CccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccccc--CCCCCCCCE
Q 047139 131 NFKVLDLSNNGFNSTL-PHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRN--LGTLCNLQT 207 (611)
Q Consensus 131 ~l~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~--l~~l~~L~~ 207 (611)
++++|+|++|.+.+.+ |..|.++++|++|+|++|.+.+..|..|+++++|++|++++|. +.+.+|.. ++++++|++
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCE
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCE
Confidence 6789999999776666 6788999999999999999988888899999999999999998 56555554 888999999
Q ss_pred EEcccccCCCccc-hhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCC--CCCcEEEccCCcccccCCCCccCccc--
Q 047139 208 LKLSLNQFSGEVS-DFIDGLSECINSSSLARLELGYNQLTGNLPISLGYL--KNLRYLELWYNSFLGSIPPSLGNLTF-- 282 (611)
Q Consensus 208 L~l~~n~l~~~~~-~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~-- 282 (611)
|++++|.+++..+ ..++.++ +|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..|..++.+++
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~------~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLN------SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCS------SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred EECCCCcccccccchhHhhCC------CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 9999999887755 5677777 89999999999988888888776 88999999999998888877776665
Q ss_pred ----CceEEecCCccccCCCcCCC------------------------------------C--CCCCCEEEccCCccccc
Q 047139 283 ----LEELYLTSNQMNGKFPESFG------------------------------------Q--LSAIRVLELSDNQWEGF 320 (611)
Q Consensus 283 ----L~~L~L~~n~l~~~~~~~l~------------------------------------~--l~~L~~L~L~~n~l~~~ 320 (611)
|++|++++|.+++..+..+. . .++|+.|++++|.+.+.
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 89999999877665543322 1 26789999999988876
Q ss_pred cChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchh
Q 047139 321 ITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSW 400 (611)
Q Consensus 321 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~ 400 (611)
.+. .+..+++|+.|++++| .+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..
T Consensus 282 ~~~-~~~~l~~L~~L~L~~n---~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 282 NSR-VFETLKDLKVLNLAYN---KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp CSC-CSSSCCCCCEEEEESC---CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred Chh-hhhcCCCCCEEECCCC---cCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence 554 7888999999999984 444555566777889999999999988888888999999999999999887665554
Q ss_pred HHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccc-ccchhccC
Q 047139 401 FLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSI-PQSVGNLK 479 (611)
Q Consensus 401 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~-~~~l~~l~ 479 (611)
+.. +++|++|++++|.+++ ++. ...++.+++++|+++ .+|.....++.+ ++++|.+++.. +..+.+++
T Consensus 358 ~~~-l~~L~~L~Ls~N~l~~-i~~---~~~L~~L~l~~N~l~-~l~~~~~~l~~L-----~ls~N~l~~l~~~~~~~~l~ 426 (844)
T 3j0a_A 358 FKF-LEKLQTLDLRDNALTT-IHF---IPSIPDIFLSGNKLV-TLPKINLTANLI-----HLSENRLENLDILYFLLRVP 426 (844)
T ss_dssp SCS-CCCCCEEEEETCCSCC-CSS---CCSCSEEEEESCCCC-CCCCCCTTCCEE-----ECCSCCCCSSTTHHHHTTCT
T ss_pred hcC-CCCCCEEECCCCCCCc-ccC---CCCcchhccCCCCcc-ccccccccccee-----ecccCccccCchhhhhhcCC
Confidence 443 5789999999998874 222 346888999999888 456554444444 44888887642 23356888
Q ss_pred CCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccc-----ccCcccccCCCCCCEEECCCCcCcccChhH
Q 047139 480 QLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS-----GEIPPSLKNCSLMDSLDLGENQLSGNIPAW 554 (611)
Q Consensus 480 ~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 554 (611)
+|++|++++|+++.+... ..+..+++|+.|++++|.++ +..+..|..+++|+.|+|++|++++..|..
T Consensus 427 ~L~~L~Ls~N~l~~~~~~-------~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 499 (844)
T 3j0a_A 427 HLQILILNQNRFSSCSGD-------QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499 (844)
T ss_dssp TCCEEEEESCCCCCCCSS-------SSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred ccceeeCCCCcccccccc-------cccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhH
Confidence 999999999887644321 12233678999999999886 344567888899999999999998655555
Q ss_pred HhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCccccccCC
Q 047139 555 IGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSA 609 (611)
Q Consensus 555 l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~~ 609 (611)
+. .+++|++|+|++|++++..|..+. ++|++|++++|++++.+|..|.++..
T Consensus 500 ~~-~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~ 551 (844)
T 3j0a_A 500 FS-HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSV 551 (844)
T ss_dssp SS-SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCE
T ss_pred cc-chhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCE
Confidence 54 489999999999999976666654 78999999999999999888776543
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-46 Score=415.50 Aligned_cols=431 Identities=19% Similarity=0.271 Sum_probs=333.5
Q ss_pred CCCeEEccCCcCccCCCccccCCCCCCEEEccCCCC------CC------CCCccCCCCCCCCEEEccCCCCCccccccc
Q 047139 131 NFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDL------QG------DIPDGFSSLNSLQLLDLSGNSFLEGQLSRN 198 (611)
Q Consensus 131 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~------~~------~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 198 (611)
.++.|+|+++.+.|.+|..++++++|++|+|++|.+ .+ .+|... +.+|+ ++++++. ..+.+|..
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~-l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTF-VDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHH-TCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhh-hccCchhh
Confidence 455667777778899999999999999999999976 22 333333 45667 7777776 56677766
Q ss_pred CCCC---------C----------CCCEEEcc--cccCCCccchhhhcCcccCCCCCCcEEEccCCCCCcc---------
Q 047139 199 LGTL---------C----------NLQTLKLS--LNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGN--------- 248 (611)
Q Consensus 199 l~~l---------~----------~L~~L~l~--~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~--------- 248 (611)
+..+ . .++.+.+. .|.+++ +|..++.++ +|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLT------KLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCT------TCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhccc------CCCEEECcCCcccccccccccccc
Confidence 6521 1 11112221 567777 788888887 899999999999875
Q ss_pred --------CCcccC--CCCCCcEEEccCCcccccCCCCccCcccCceEEecCCc-ccc-CCCcCCCCC------CCCCEE
Q 047139 249 --------LPISLG--YLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ-MNG-KFPESFGQL------SAIRVL 310 (611)
Q Consensus 249 --------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L 310 (611)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 888888 89999999999999888999889999999999999998 887 788877765 889999
Q ss_pred EccCCccccccCh-hhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCC-CCEEEc
Q 047139 311 ELSDNQWEGFITD-AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTE-LTTLVL 388 (611)
Q Consensus 311 ~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l 388 (611)
++++|.++ .+|. ..++++++|++|++++| .+.+.++ .+..+++|+.|++++|.+. .+|.++..+++ |++|++
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N---~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYN---QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSF 384 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSC---CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEEC
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCC---cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEc
Confidence 99999988 5664 36888999999999884 5566666 7777888999999999888 78888888888 999999
Q ss_pred cCcccccccchhHHhc-CCCCCEEEccCcccccccCcccc-------cC-CCceEEccCCcccccCCCC-CCCcceeecC
Q 047139 389 NSASISDTLPSWFLQL-NLTLDELDVGGNHLSGRIPNTLV-------FR-FPGSVDLSSNRFEGPIPLW-SSNLTKLYLR 458 (611)
Q Consensus 389 ~~n~l~~~~p~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~-------~~-~l~~l~ls~n~~~~~~p~~-~~~l~~L~l~ 458 (611)
++|.++ .+|..+... .++|++|++++|++.+.+|..+. .. .++.|++++|.++ .+|.. +..++.| +
T Consensus 385 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L--~ 460 (636)
T 4eco_A 385 AHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPL--S 460 (636)
T ss_dssp CSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCC--S
T ss_pred cCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCC--C
Confidence 999988 777755432 24788999999999888877665 22 6888899999888 44443 2233333 5
Q ss_pred cccCCCCeeecccccchhc--------cCCCCeEECcCCCCCCCCCCcccccCccccc--CcCCCCEEECcCCcccccCc
Q 047139 459 DLDISFNSINGSIPQSVGN--------LKQLLTLVISNNNLSDMTNNNFSGEIPESIG--SLLTIRFLVLSNNHLSGEIP 528 (611)
Q Consensus 459 ~L~Ls~n~l~~~~~~~l~~--------l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~--~l~~L~~L~Ls~n~l~~~~p 528 (611)
+|++++|.++ .+|..+.. +++|++|++++|+++ .+|..+. .+++|++|+|++|++++ +|
T Consensus 461 ~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip 529 (636)
T 4eco_A 461 SINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT---------KLSDDFRATTLPYLVGIDLSYNSFSK-FP 529 (636)
T ss_dssp EEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC---------BCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred EEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC---------ccChhhhhccCCCcCEEECCCCCCCC-cC
Confidence 5666888888 55544332 238889988888765 5677776 78899999999999986 88
Q ss_pred ccccCCCCCCEEEC------CCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCc
Q 047139 529 PSLKNCSLMDSLDL------GENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLL 597 (611)
Q Consensus 529 ~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 597 (611)
..+.++++|+.|++ ++|++.+.+|..+.. +++|++|++++|++ +.+|..+. ++|++||+++|++.
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL-CPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG-CSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred hhhhcCCCCCEEECCCCcccccCcccccChHHHhc-CCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 88888999999998 567788888888876 89999999999999 57888765 78999999999664
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.6e-44 Score=390.79 Aligned_cols=456 Identities=22% Similarity=0.225 Sum_probs=350.2
Q ss_pred eeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCC
Q 047139 111 KISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSF 190 (611)
Q Consensus 111 ~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~ 190 (611)
.+|..+. ++|++|++++| .+++..|..+.++++|++|++++|++++..|.+|+++++|++|++++|+
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~- 85 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFN----------KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH- 85 (549)
T ss_dssp SCCSCCC--TTCCEEECCSS----------CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred cccccCC--CCccEEECcCC----------ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-
Confidence 3454443 55666555555 4455667788999999999999999998888889999999999999998
Q ss_pred CcccccccCCCCCCCCEEEcccccCCCc-cchhhhcCcccCCCCCCcEEEccCCCCCccCC-cccCCCCCCcEEEccCCc
Q 047139 191 LEGQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFIDGLSECINSSSLARLELGYNQLTGNLP-ISLGYLKNLRYLELWYNS 268 (611)
Q Consensus 191 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~ 268 (611)
+.+..+..++++++|++|++++|.+++. .|..++.++ +|++|++++|.+.+.+| ..+.++++|++|++++|.
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~------~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT------TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC------CccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 5666666789999999999999998863 566677776 89999999998544554 678889999999999999
Q ss_pred ccccCCCCccCcccCceEEecCCccccCCCcC-CCCCCCCCEEEccCCcccccc--ChhhhcCCCCCCEEEcCccCCCCc
Q 047139 269 FLGSIPPSLGNLTFLEELYLTSNQMNGKFPES-FGQLSAIRVLELSDNQWEGFI--TDAHLRNLTSLEELSLIKTSNSSL 345 (611)
Q Consensus 269 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 345 (611)
+++..|..++.+++|++|++++|.+.. +|.. +..+++|++|++++|++.+.. +......+++|+.|++++|. +
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~---l 235 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV---L 235 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE---E
T ss_pred ccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc---c
Confidence 998888889999999999999888753 3433 346788999999999887742 22234567889999998843 2
Q ss_pred eeec----cCCCCCCcceeEEEecccccCcc------cchhccCCCCCCEEEccCccccccc----chhHHhcCCCCCEE
Q 047139 346 SFNI----SFDWIPPFKLRYLVIRYYQLGPK------FPTWLRNQTELTTLVLNSASISDTL----PSWFLQLNLTLDEL 411 (611)
Q Consensus 346 ~~~~----~~~~~~~~~L~~L~l~~~~l~~~------~~~~l~~~~~L~~L~l~~n~l~~~~----p~~~~~~~~~L~~L 411 (611)
.+.. ........+++.+++++|.+.+. ....+..+++++.|++.++.+.... ...+....++|+.+
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L 315 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence 2221 12234456889999998877652 1233567788999999888765421 11223445799999
Q ss_pred EccCcccccccCcccc--cCCCceEEccCCcccccCC---CCCCCcceeecCcccCCCCeeecccc--cchhccCCCCeE
Q 047139 412 DVGGNHLSGRIPNTLV--FRFPGSVDLSSNRFEGPIP---LWSSNLTKLYLRDLDISFNSINGSIP--QSVGNLKQLLTL 484 (611)
Q Consensus 412 ~ls~n~l~~~~~~~~~--~~~l~~l~ls~n~~~~~~p---~~~~~l~~L~l~~L~Ls~n~l~~~~~--~~l~~l~~L~~L 484 (611)
++++|++. .+|..+. ...++.+++++|++++.+| ..+..+..| ++|++++|++++..+ ..+..+++|++|
T Consensus 316 ~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L--~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 316 TVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL--QTLVLSQNHLRSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp EEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC--CEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred EeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccC--cEEEccCCcccccccchhhhhcCCCCCEE
Confidence 99999987 7777663 4589999999999998764 234444444 566779999986543 568899999999
Q ss_pred ECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcE
Q 047139 485 VISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI 564 (611)
Q Consensus 485 ~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~ 564 (611)
++++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|++++.+ ..+++|++
T Consensus 393 ~Ls~N~l~---------~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~-----~~l~~L~~ 455 (549)
T 2z81_A 393 DISRNTFH---------PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS-----LFLPRLQE 455 (549)
T ss_dssp ECTTCCCC---------CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC-----CCCTTCCE
T ss_pred ECCCCCCc---------cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc-----ccCChhcE
Confidence 99999876 57778888999999999999998 455444 268999999999999643 24899999
Q ss_pred EECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCccccccCCCC
Q 047139 565 LRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYCVGDFSAMT 611 (611)
Q Consensus 565 L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~~~~~~~l~ 611 (611)
|++++|+++ .+|. ...+++|++|++++|++++.+|..++++++|+
T Consensus 456 L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 456 LYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp EECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred EECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 999999999 7886 46789999999999999999998888888764
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.3e-45 Score=396.15 Aligned_cols=443 Identities=20% Similarity=0.235 Sum_probs=363.4
Q ss_pred eEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccc
Q 047139 134 VLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 213 (611)
Q Consensus 134 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n 213 (611)
++|+++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|+ +.+..|..++++++|++|++++|
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC
Confidence 4666666666 5777665 899999999999998888899999999999999999 67777899999999999999999
Q ss_pred cCCCccchhhhcCcccCCCCCCcEEEccCCCCCc-cCCcccCCCCCCcEEEccCCcccccCCCCccCcccC--ceEEecC
Q 047139 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFL--EELYLTS 290 (611)
Q Consensus 214 ~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~ 290 (611)
.++. +|.. .++ +|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++
T Consensus 80 ~l~~-lp~~--~l~------~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 80 KLVK-ISCH--PTV------NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp CCCE-EECC--CCC------CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred ceee-cCcc--ccC------CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 9984 4544 455 99999999999997 578999999999999999999986 357778888 9999999
Q ss_pred Ccc--ccCCCcCCCCCC-CCCEEEccCCccccccChhhhcCCCCCCEEEcCccC----CCCceeeccCCCCCCcceeEEE
Q 047139 291 NQM--NGKFPESFGQLS-AIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS----NSSLSFNISFDWIPPFKLRYLV 363 (611)
Q Consensus 291 n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~----~~~~~~~~~~~~~~~~~L~~L~ 363 (611)
|.+ .+..|..+..+. +...+++++|.+.+.++...+.++++|+.+++++|. ...+.+..+ .+..+++|+.|+
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~ 226 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLT 226 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEE
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcc
Confidence 999 788888887765 345678889999888888788999999999999853 111333333 566778999999
Q ss_pred ecccccCcccchhcc---CCCCCCEEEccCcccccccchhHH----hcCCCCCEEEccCcccccccCc-ccc----cCCC
Q 047139 364 IRYYQLGPKFPTWLR---NQTELTTLVLNSASISDTLPSWFL----QLNLTLDELDVGGNHLSGRIPN-TLV----FRFP 431 (611)
Q Consensus 364 l~~~~l~~~~~~~l~---~~~~L~~L~l~~n~l~~~~p~~~~----~~~~~L~~L~ls~n~l~~~~~~-~~~----~~~l 431 (611)
++++.+.+..+..+. ..++|++|++++|+++|.+|.+++ ..+++|+.+++++|.+ .+|. .+. ...+
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L 304 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNI 304 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCC
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCce
Confidence 999988764333221 246999999999999999998773 3357899999999998 5662 222 2369
Q ss_pred ceEEccCCcccccC-CCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCc
Q 047139 432 GSVDLSSNRFEGPI-PLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSL 510 (611)
Q Consensus 432 ~~l~ls~n~~~~~~-p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l 510 (611)
+.+++++|.+.+.. +..+.++ ++|++++|.+++.+|..++.+++|++|++++|+++.++ .+|..++.+
T Consensus 305 ~~L~l~~n~l~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~------~~~~~~~~l 373 (520)
T 2z7x_B 305 KNFTVSGTRMVHMLCPSKISPF-----LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS------KIAEMTTQM 373 (520)
T ss_dssp SEEEEESSCCCCCCCCSSCCCC-----CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH------HHHHHHTTC
T ss_pred eEEEcCCCccccccchhhCCcc-----cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc------cchHHHhhC
Confidence 99999999987543 2333444 55666999999999999999999999999999876322 566778889
Q ss_pred CCCCEEECcCCcccccCccc-ccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEe
Q 047139 511 LTIRFLVLSNNHLSGEIPPS-LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL 589 (611)
Q Consensus 511 ~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 589 (611)
++|++|++++|++++.+|.. +..+++|++|++++|++++.+|..+ .++|++|++++|+++ .+|..+..+++|++|
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC---CTTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh---cccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 99999999999999867764 8899999999999999998888754 279999999999999 899988899999999
Q ss_pred eccCCcCccCCCcc-ccccCCCC
Q 047139 590 DLSHNNLLGPIPYC-VGDFSAMT 611 (611)
Q Consensus 590 ~ls~n~l~g~iP~~-~~~~~~l~ 611 (611)
++++|+++ .+|.. +.+++.|+
T Consensus 450 ~L~~N~l~-~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 450 NVASNQLK-SVPDGIFDRLTSLQ 471 (520)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ECCCCcCC-ccCHHHhccCCccc
Confidence 99999998 67876 77777664
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-45 Score=411.85 Aligned_cols=438 Identities=20% Similarity=0.241 Sum_probs=267.7
Q ss_pred CCCCeEEccCCcCccCCCccccCCCCCCEEEc-cCCCCCCCCCccCCCCC-CCCE----------------EE-------
Q 047139 130 NNFKVLDLSNNGFNSTLPHWLFNITNLLSLDL-SSNDLQGDIPDGFSSLN-SLQL----------------LD------- 184 (611)
Q Consensus 130 n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-~~n~~~~~~p~~l~~l~-~L~~----------------L~------- 184 (611)
..++.|+|+++.+.|.+|+.++++++|++|+| ++|.+.|..|-...... .+.. .+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 35667788888888999999999999999999 88877665332211000 0000 00
Q ss_pred -----ccCCCCCcccccccCCCCCCCCEEEccc--ccCCCccchhhhcCcccCCCCCCcEEEccCCCCCc----------
Q 047139 185 -----LSGNSFLEGQLSRNLGTLCNLQTLKLSL--NQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG---------- 247 (611)
Q Consensus 185 -----Ls~n~~~~~~~~~~l~~l~~L~~L~l~~--n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~---------- 247 (611)
+..+. ...+........++.+.+.. |.+++ +|..++.++ +|++|+|++|++++
T Consensus 403 l~~~~l~~~~---~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~------~L~~L~Ls~N~Lsg~~i~~~~~~~ 472 (876)
T 4ecn_A 403 LLQDAINRNP---EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLT------KLQIIYFANSPFTYDNIAVDWEDA 472 (876)
T ss_dssp HHHHHHHTCT---TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCT------TCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHhhhCc---cccccccccccchhhceeccccCcccc-hhHHHhcCC------CCCEEECcCCcCCCCccccccccc
Confidence 00000 00000001111222222222 34444 444444444 44444444444444
Q ss_pred -------cCCcccC--CCCCCcEEEccCCcccccCCCCccCcccCceEEecCCc-ccc-CCCcCCC-------CCCCCCE
Q 047139 248 -------NLPISLG--YLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ-MNG-KFPESFG-------QLSAIRV 309 (611)
Q Consensus 248 -------~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~-------~l~~L~~ 309 (611)
.+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++ .+++|++
T Consensus 473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence 2555554 55555555555555555555555555555555555554 554 4444332 2335555
Q ss_pred EEccCCccccccCh-hhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCC-CCEEE
Q 047139 310 LELSDNQWEGFITD-AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTE-LTTLV 387 (611)
Q Consensus 310 L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~ 387 (611)
|++++|.+. .+|. ..+.++++|+.|++++|.. . .++ .+..+++|+.|++++|.+. .+|..+..+++ |+.|+
T Consensus 553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l---~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV---R-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC---C-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE
T ss_pred EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc---c-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEE
Confidence 555555555 3443 2455555555555555332 1 233 4455556666666666666 56666666666 77777
Q ss_pred ccCcccccccchhHHhcC-CCCCEEEccCcccccccCccc------ccCCCceEEccCCcccccCCCCC-CCcceeecCc
Q 047139 388 LNSASISDTLPSWFLQLN-LTLDELDVGGNHLSGRIPNTL------VFRFPGSVDLSSNRFEGPIPLWS-SNLTKLYLRD 459 (611)
Q Consensus 388 l~~n~l~~~~p~~~~~~~-~~L~~L~ls~n~l~~~~~~~~------~~~~l~~l~ls~n~~~~~~p~~~-~~l~~L~l~~ 459 (611)
+++|.++ .+|..+.... ++|+.|++++|++.+.+|... ....++.|++++|.++ .+|..+ ..+..| ++
T Consensus 626 Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L--~~ 701 (876)
T 4ecn_A 626 FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI--ST 701 (876)
T ss_dssp CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC--SE
T ss_pred CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC--CE
Confidence 7777766 5555443321 236777777777766555322 1125667777777776 344322 223332 44
Q ss_pred ccCCCCeeecccccchh--------ccCCCCeEECcCCCCCCCCCCcccccCccccc--CcCCCCEEECcCCcccccCcc
Q 047139 460 LDISFNSINGSIPQSVG--------NLKQLLTLVISNNNLSDMTNNNFSGEIPESIG--SLLTIRFLVLSNNHLSGEIPP 529 (611)
Q Consensus 460 L~Ls~n~l~~~~~~~l~--------~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~--~l~~L~~L~Ls~n~l~~~~p~ 529 (611)
|++++|.++ .+|..+. ++++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|.
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---------~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~ 770 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT---------SLSDDFRATTLPYLSNMDVSYNCFSS-FPT 770 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC---------CCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc---------cchHHhhhccCCCcCEEEeCCCCCCc-cch
Confidence 555777777 5555433 3448999999999876 5777776 89999999999999997 899
Q ss_pred cccCCCCCCEEECCC------CcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCcc
Q 047139 530 SLKNCSLMDSLDLGE------NQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPYC 603 (611)
Q Consensus 530 ~l~~l~~L~~L~Ls~------N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~~ 603 (611)
.+..+++|+.|+|++ |++.+.+|..+.. +++|+.|+|++|++ +.+|..+. ++|+.||+++|++...-+..
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~-L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT-CPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG-CSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGG
T ss_pred hhhcCCCCCEEECCCCCCcccccccccChHHHhc-CCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHH
Confidence 999999999999976 8888999999886 99999999999999 68998876 69999999999987554443
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.3e-43 Score=381.07 Aligned_cols=458 Identities=20% Similarity=0.213 Sum_probs=359.8
Q ss_pred EEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCC
Q 047139 85 IMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSN 164 (611)
Q Consensus 85 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 164 (611)
+.+++++ +++++ +|..+. ++|++|++++|++ ++..|..|.++++|++|++++|
T Consensus 34 ~~l~ls~--------------~~L~~-ip~~~~--~~L~~L~Ls~N~i----------~~~~~~~~~~l~~L~~L~Ls~N 86 (562)
T 3a79_B 34 SMVDYSN--------------RNLTH-VPKDLP--PRTKALSLSQNSI----------SELRMPDISFLSELRVLRLSHN 86 (562)
T ss_dssp CEEECTT--------------SCCCS-CCTTSC--TTCCEEECCSSCC----------CCCCGGGTTTCTTCCEEECCSC
T ss_pred cEEEcCC--------------CCCcc-CCCCCC--CCcCEEECCCCCc----------cccChhhhccCCCccEEECCCC
Confidence 5677777 66765 666554 6677766666554 5566779999999999999999
Q ss_pred CCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCc-cchhhhcCcccCCCCCCcEEEccCC
Q 047139 165 DLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFIDGLSECINSSSLARLELGYN 243 (611)
Q Consensus 165 ~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~~~~~~~L~~L~Ls~n 243 (611)
++++..|+.|+++++|++|++++|++ + .+|.. .+++|++|++++|.+++. .|..++.++ +|++|++++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~N~l-~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~------~L~~L~L~~n 156 (562)
T 3a79_B 87 RIRSLDFHVFLFNQDLEYLDVSHNRL-Q-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT------KLTFLGLSAA 156 (562)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCC-C-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT------TCCEEEEECS
T ss_pred CCCcCCHHHhCCCCCCCEEECCCCcC-C-ccCcc--ccccCCEEECCCCCccccCchHhhcccC------cccEEecCCC
Confidence 99988899999999999999999995 4 57766 899999999999999984 578898888 9999999999
Q ss_pred CCCccCCcccCCCCCC--cEEEccCCcc--cccCCCCccCcc-cCceEEecCCccccCCCc-CCCCCCCCCEEEccCCc-
Q 047139 244 QLTGNLPISLGYLKNL--RYLELWYNSF--LGSIPPSLGNLT-FLEELYLTSNQMNGKFPE-SFGQLSAIRVLELSDNQ- 316 (611)
Q Consensus 244 ~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~- 316 (611)
++++. .+..+++| ++|++++|.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.
T Consensus 157 ~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 233 (562)
T 3a79_B 157 KFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233 (562)
T ss_dssp BCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred ccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence 99864 34445555 9999999999 888888877654 122568889988876554 35678899999999985
Q ss_pred ----cccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhc-----cCCCCCCEEE
Q 047139 317 ----WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWL-----RNQTELTTLV 387 (611)
Q Consensus 317 ----l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~L~ 387 (611)
+.+.+ ..+..+++|+.+++.++.................+|++|++++|.+.+.+|..+ ..++.|+.++
T Consensus 234 ~~~~l~~~~--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~ 311 (562)
T 3a79_B 234 NCQRLMTFL--SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311 (562)
T ss_dssp THHHHHHHH--HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred ccchHHHHH--HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence 22322 257888999999988743211000000011123489999999999999999887 7777777778
Q ss_pred ccCcccccccc-hhHHhc--CCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCC
Q 047139 388 LNSASISDTLP-SWFLQL--NLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISF 464 (611)
Q Consensus 388 l~~n~l~~~~p-~~~~~~--~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~ 464 (611)
+..+.+ .+| .++... ..+++.|++++|.+..... ......++.+++++|.+++.+|..+..+..| ++|++++
T Consensus 312 ~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~ 386 (562)
T 3a79_B 312 VKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL--QTLILQR 386 (562)
T ss_dssp EEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSC--CEEECCS
T ss_pred ccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCC--CEEECCC
Confidence 888777 555 333332 2579999999999863321 1123479999999999999899888777766 7788899
Q ss_pred Ceeec--ccccchhccCCCCeEECcCCCCCCCCCCcccccCcc-cccCcCCCCEEECcCCcccccCcccccCCCCCCEEE
Q 047139 465 NSING--SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPE-SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLD 541 (611)
Q Consensus 465 n~l~~--~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 541 (611)
|++++ .+|..+..+++|++|++++|+++. .+|. .+..+++|++|++++|++++.+|..+. ++|++|+
T Consensus 387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~ 456 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNS--------HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456 (562)
T ss_dssp SCCCBTTHHHHTTTTCTTCCEEECTTSCCBS--------CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEE
T ss_pred CCcCCcccchhhhcCCCCCCEEECCCCcCCC--------ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEE
Confidence 99997 446778999999999999998763 2443 255689999999999999988887665 7999999
Q ss_pred CCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCcc-ccCCCCCCEeeccCCcCccCCCc
Q 047139 542 LGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE-LCKLSALHILDLSHNNLLGPIPY 602 (611)
Q Consensus 542 Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~ls~n~l~g~iP~ 602 (611)
+++|+++ .+|.+++ .+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..|.
T Consensus 457 L~~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 457 LHNNRIM-SIPKDVT-HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCSSCCC-CCCTTTT-SSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCcCc-ccChhhc-CCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9999999 8999888 4999999999999999 57766 89999999999999999987763
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-41 Score=373.82 Aligned_cols=454 Identities=22% Similarity=0.179 Sum_probs=256.4
Q ss_pred CCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCC
Q 047139 121 DLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG 200 (611)
Q Consensus 121 ~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~ 200 (611)
.+++|||++|++ ++..|.+|.++++|++|+|++|+|++..|.+|.++++|++|+|++|+ +++..+..|.
T Consensus 53 ~~~~LdLs~N~i----------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~ 121 (635)
T 4g8a_A 53 STKNLDLSFNPL----------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS 121 (635)
T ss_dssp TCCEEECTTSCC----------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGT
T ss_pred CCCEEEeeCCCC----------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhc
Confidence 455555555544 44455678888888888888888887777778888888888888888 4554456678
Q ss_pred CCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCc-cCCcccCCCCCCcEEEccCCcccccCCCCccC
Q 047139 201 TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWYNSFLGSIPPSLGN 279 (611)
Q Consensus 201 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 279 (611)
++++|++|++++|++++..+..++.++ +|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCT------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCc------ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 888888888888888877777777776 88888888888764 35677778888888888888888777776665
Q ss_pred cccC----ceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCC-------------
Q 047139 280 LTFL----EELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSN------------- 342 (611)
Q Consensus 280 l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~------------- 342 (611)
+.++ ..++++.|.+....+.. .....++.+++.+|.....+....+..+..++...+.....
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred hhhhhhhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 5444 35777777777544433 33445677777777655444444555565555444432111
Q ss_pred -----------------CCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHH---
Q 047139 343 -----------------SSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFL--- 402 (611)
Q Consensus 343 -----------------~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~--- 402 (611)
..........+....+++.+.+..+.+... ..+.....++.|++.+|.+.+..+..+.
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~ 352 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 352 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCC
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhh
Confidence 000011111112222344444444333221 1123334455555555444322211100
Q ss_pred ---------------hcCCCCCEEEccCcccccc--cCccccc-CCCceEEccCCcccccCCCCCCCcceeecCcccCCC
Q 047139 403 ---------------QLNLTLDELDVGGNHLSGR--IPNTLVF-RFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISF 464 (611)
Q Consensus 403 ---------------~~~~~L~~L~ls~n~l~~~--~~~~~~~-~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~ 464 (611)
...++|+.+++++|.+... .+..... ..++.+++..|...+..+ .+..+..+ +.++++.
T Consensus 353 ~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~~L--~~l~l~~ 429 (635)
T 4g8a_A 353 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-NFLGLEQL--EHLDFQH 429 (635)
T ss_dssp EEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-CCTTCTTC--CEEECTT
T ss_pred hcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-cccccccc--cchhhhh
Confidence 0135666666666666432 2222222 256666666666554332 22223222 3344455
Q ss_pred Ceeecccc-cchhccCCCCeEECcCCCCC----------------CCCCCcc-cccCcccccCcCCCCEEECcCCccccc
Q 047139 465 NSINGSIP-QSVGNLKQLLTLVISNNNLS----------------DMTNNNF-SGEIPESIGSLLTIRFLVLSNNHLSGE 526 (611)
Q Consensus 465 n~l~~~~~-~~l~~l~~L~~L~L~~n~i~----------------~l~~n~~-~g~ip~~~~~l~~L~~L~Ls~n~l~~~ 526 (611)
++.....+ ..+..+++++.+++++|.+. +++.|.+ .+.+|..+..+++|++|+|++|++++.
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence 55544333 33455666666666655543 1222221 223444555556666666666666655
Q ss_pred CcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCC-CCCCEeeccCCcCcc
Q 047139 527 IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL-SALHILDLSHNNLLG 598 (611)
Q Consensus 527 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~L~ls~n~l~g 598 (611)
.|..|.++++|++|+|++|+|++..|..+. .+++|++|+|++|++++..|..+..+ ++|++|++++|++.-
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGT-TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHh-CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 555566666666666666666543333333 25666666666666665555555555 456666666665543
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.7e-42 Score=375.49 Aligned_cols=443 Identities=19% Similarity=0.200 Sum_probs=344.4
Q ss_pred CEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCC
Q 047139 123 EYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTL 202 (611)
Q Consensus 123 ~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l 202 (611)
+++|+++|++ + .+|..+. ++|++|++++|.+++..|..|+++++|++|++++|+ +++..|..|+++
T Consensus 34 ~~l~ls~~~L----------~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 99 (562)
T 3a79_B 34 SMVDYSNRNL----------T-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFN 99 (562)
T ss_dssp CEEECTTSCC----------C-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTC
T ss_pred cEEEcCCCCC----------c-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCC
Confidence 5566655554 4 4676554 899999999999998888899999999999999999 677778899999
Q ss_pred CCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCc-cCCcccCCCCCCcEEEccCCcccccCCCCccCcc
Q 047139 203 CNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLT 281 (611)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 281 (611)
++|++|++++|.++. +|.. .++ +|++|++++|++++ .+|..++++++|++|++++|.+++. .+..++
T Consensus 100 ~~L~~L~Ls~N~l~~-lp~~--~l~------~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~ 167 (562)
T 3a79_B 100 QDLEYLDVSHNRLQN-ISCC--PMA------SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVA 167 (562)
T ss_dssp TTCCEEECTTSCCCE-ECSC--CCT------TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGT
T ss_pred CCCCEEECCCCcCCc-cCcc--ccc------cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhh
Confidence 999999999999984 4443 455 99999999999996 4568999999999999999999863 455666
Q ss_pred cC--ceEEecCCcc--ccCCCcCCCCCC-CCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCC--CceeeccCCCC
Q 047139 282 FL--EELYLTSNQM--NGKFPESFGQLS-AIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNS--SLSFNISFDWI 354 (611)
Q Consensus 282 ~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~ 354 (611)
+| ++|++++|.+ ++..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|... .+.+ ....+.
T Consensus 168 ~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~ 246 (562)
T 3a79_B 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELT 246 (562)
T ss_dssp TSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHH
T ss_pred hceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHh
Confidence 66 9999999999 888887777654 12266888999988888777888999999999985310 0111 111234
Q ss_pred CCcceeEEEecccccCcc----cchhccCCCCCCEEEccCcccccccchhHH----hcCCCCCEEEccCcccccccCccc
Q 047139 355 PPFKLRYLVIRYYQLGPK----FPTWLRNQTELTTLVLNSASISDTLPSWFL----QLNLTLDELDVGGNHLSGRIPNTL 426 (611)
Q Consensus 355 ~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~----~~~~~L~~L~ls~n~l~~~~~~~~ 426 (611)
..+.++.+++.++.+.+. ++..+ ..++|++|++++|.++|.+|..++ ..++.|+.++++.+.+ .+|...
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~ 323 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEA 323 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHH
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhh
Confidence 456788888888776642 22222 235999999999999998888763 2224444555555554 344221
Q ss_pred -----ccCCCceEEccCCcccccCC-CCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCccc
Q 047139 427 -----VFRFPGSVDLSSNRFEGPIP-LWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFS 500 (611)
Q Consensus 427 -----~~~~l~~l~ls~n~~~~~~p-~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~ 500 (611)
....++.+++++|.+..... ..+.++ ++|++++|.+++..|..+.++++|++|++++|+++.+.
T Consensus 324 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----- 393 (562)
T 3a79_B 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF-----TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF----- 393 (562)
T ss_dssp HHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC-----CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT-----
T ss_pred hhhhhccCcceEEEccCCCcccccCccCCCCc-----eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc-----
Confidence 22369999999999865332 233334 55666999999999999999999999999999887433
Q ss_pred ccCcccccCcCCCCEEECcCCcccccCcc-cccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCcc
Q 047139 501 GEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE 579 (611)
Q Consensus 501 g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~ 579 (611)
.+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..
T Consensus 394 -~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~ 468 (562)
T 3a79_B 394 -KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKD 468 (562)
T ss_dssp -HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC---TTCSEEECCSSCCC-CCCTT
T ss_pred -cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc---CcCCEEECCCCcCc-ccChh
Confidence 4556778899999999999999985665 588999999999999999988776432 69999999999999 78988
Q ss_pred ccCCCCCCEeeccCCcCccCCCcc-ccccCCCC
Q 047139 580 LCKLSALHILDLSHNNLLGPIPYC-VGDFSAMT 611 (611)
Q Consensus 580 l~~l~~L~~L~ls~n~l~g~iP~~-~~~~~~l~ 611 (611)
+..+++|++|++++|+++ .+|.. ++.++.|+
T Consensus 469 ~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 469 VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ 500 (562)
T ss_dssp TTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred hcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence 889999999999999999 67776 77777664
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9e-40 Score=362.38 Aligned_cols=446 Identities=21% Similarity=0.191 Sum_probs=284.4
Q ss_pred CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEc
Q 047139 82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDL 161 (611)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 161 (611)
..++.|+|++ +.+++..+.+|.++++|++|||++|+++ +..|.+|.++++|++|+|
T Consensus 52 ~~~~~LdLs~--------------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----------~i~~~~f~~L~~L~~L~L 107 (635)
T 4g8a_A 52 FSTKNLDLSF--------------NPLRHLGSYSFFSFPELQVLDLSRCEIQ----------TIEDGAYQSLSHLSTLIL 107 (635)
T ss_dssp TTCCEEECTT--------------SCCCEECTTTTTTCTTCCEEECTTCCCC----------EECTTTTTTCTTCCEEEC
T ss_pred cCCCEEEeeC--------------CCCCCCCHHHHhCCCCCCEEECCCCcCC----------CcChhHhcCCCCCCEEEc
Confidence 3567777777 8999888889999999999999988664 233445666666666666
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCc-cchhhhcCcccCCCCCCcEEEc
Q 047139 162 SSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGE-VSDFIDGLSECINSSSLARLEL 240 (611)
Q Consensus 162 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~~~~~~~L~~L~L 240 (611)
++|++++..+..|+++++|++|++++|+ +++..+..|+++++|++|++++|.+++. .|..++.++ +|++|++
T Consensus 108 s~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~------~L~~L~L 180 (635)
T 4g8a_A 108 TGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------NLEHLDL 180 (635)
T ss_dssp TTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT------TCCEEEC
T ss_pred cCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccch------hhhhhcc
Confidence 6666665555566666666666666666 3444444566666666666666666543 455555555 6666666
Q ss_pred cCCCCCccCCcccCCCCCC----cEEEccCCcccccCCCCccCcccCceEEecCCcccc---------------------
Q 047139 241 GYNQLTGNLPISLGYLKNL----RYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG--------------------- 295 (611)
Q Consensus 241 s~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--------------------- 295 (611)
++|++++..+..+..+.++ ..++++.|.+....+..+ ....++.+++.+|....
T Consensus 181 ~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 259 (635)
T 4g8a_A 181 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 259 (635)
T ss_dssp CSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEE
T ss_pred cCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccc
Confidence 6666665555555433322 245555555543222221 22223333333321110
Q ss_pred -------------------------------------CCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcC
Q 047139 296 -------------------------------------KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLI 338 (611)
Q Consensus 296 -------------------------------------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 338 (611)
..+..+..+.+++.+++.++.+.... .+.....++.|++.
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~l~ 336 (635)
T 4g8a_A 260 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELV 336 (635)
T ss_dssp CCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---GGGSCCCCSEEEEE
T ss_pred ccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc---ccccchhhhhhhcc
Confidence 01111222334444554444443321 23344455555555
Q ss_pred ccCCCCcee----------------eccCCCCCCcceeEEEecccccCc--ccchhccCCCCCCEEEccCcccccccchh
Q 047139 339 KTSNSSLSF----------------NISFDWIPPFKLRYLVIRYYQLGP--KFPTWLRNQTELTTLVLNSASISDTLPSW 400 (611)
Q Consensus 339 ~~~~~~~~~----------------~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~n~l~~~~p~~ 400 (611)
++....+.. ........+++|+.++++.|.+.. ..+..+..+.+|+.+++..+......+ .
T Consensus 337 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~ 415 (635)
T 4g8a_A 337 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-N 415 (635)
T ss_dssp SCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-C
T ss_pred cccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-c
Confidence 432211110 011122345566777777666542 344555566677777777766554322 2
Q ss_pred HHhcCCCCCEEEccCcccccccCcccc--cCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeee-cccccchhc
Q 047139 401 FLQLNLTLDELDVGGNHLSGRIPNTLV--FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN-GSIPQSVGN 477 (611)
Q Consensus 401 ~~~~~~~L~~L~ls~n~l~~~~~~~~~--~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~-~~~~~~l~~ 477 (611)
+. ..++|+.++++.+......+.... ...++.++++.|.+.+..+..+..+..+ +.|++++|.+. +..|..|..
T Consensus 416 ~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L--~~L~Ls~N~~~~~~~~~~~~~ 492 (635)
T 4g8a_A 416 FL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL--EVLKMAGNSFQENFLPDIFTE 492 (635)
T ss_dssp CT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC--CEEECTTCEEGGGEECSCCTT
T ss_pred cc-ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh--hhhhhhhcccccccCchhhhh
Confidence 22 246778888877777655543332 2268888999998888887776666655 56777999754 457788999
Q ss_pred cCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhh
Q 047139 478 LKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGE 557 (611)
Q Consensus 478 l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 557 (611)
+++|++|+|++|+++ +..|..++.+++|++|+|++|++++..|..|..+++|++|++++|++++..|..+..
T Consensus 493 l~~L~~L~Ls~N~L~--------~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 493 LRNLTFLDLSQCQLE--------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp CTTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred ccccCEEECCCCccC--------CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 999999999988765 345667778999999999999999888899999999999999999999888877765
Q ss_pred cC-CCCcEEECcCCcCccc
Q 047139 558 SM-PSLSILRLRSNHFNGT 575 (611)
Q Consensus 558 ~l-~~L~~L~ls~n~l~~~ 575 (611)
+ ++|++|++++|++.+.
T Consensus 565 -l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 565 -FPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp -CCTTCCEEECTTCCBCCS
T ss_pred -hhCcCCEEEeeCCCCccc
Confidence 5 6899999999999864
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-40 Score=354.47 Aligned_cols=376 Identities=21% Similarity=0.216 Sum_probs=245.6
Q ss_pred CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc-cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCC
Q 047139 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL-SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINS 232 (611)
Q Consensus 154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~ 232 (611)
++|++|++++|.+++..|..|+++++|++|++++|. ..+.+ +..+.++++|++|++++|.+++..|..++.++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----- 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA----- 103 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT-----
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCCccCccChhhccCcc-----
Confidence 566666666666666666666666666666666666 33233 44566666666666666666666666666555
Q ss_pred CCCcEEEccCCCCCccCCcc--cCCCCCCcEEEccCCcccccCCCC-ccCcccCceEEecCCccccCCCcCCCCC--CCC
Q 047139 233 SSLARLELGYNQLTGNLPIS--LGYLKNLRYLELWYNSFLGSIPPS-LGNLTFLEELYLTSNQMNGKFPESFGQL--SAI 307 (611)
Q Consensus 233 ~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L 307 (611)
+|++|++++|++++..|.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+++..+..+..+ .++
T Consensus 104 -~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 104 -NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp -TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred -cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 6666666666666544433 666667777777777766655554 5666777777777777666666555544 456
Q ss_pred CEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEE
Q 047139 308 RVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLV 387 (611)
Q Consensus 308 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 387 (611)
+.|++++|.+.+..+. .+. . .....+..+++|++|+
T Consensus 183 ~~L~l~~n~l~~~~~~-~~~-------------------~------------------------~~~~~~~~~~~L~~L~ 218 (455)
T 3v47_A 183 TLLRLSSITLQDMNEY-WLG-------------------W------------------------EKCGNPFKNTSITTLD 218 (455)
T ss_dssp EEEECTTCBCTTCSTT-CTT-------------------H------------------------HHHCCTTTTCEEEEEE
T ss_pred cccccccCcccccchh-hcc-------------------c------------------------cccccccccceeeeEe
Confidence 6666666665442211 000 0 0001122335566666
Q ss_pred ccCcccccccchhHHhc--CCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCC
Q 047139 388 LNSASISDTLPSWFLQL--NLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFN 465 (611)
Q Consensus 388 l~~n~l~~~~p~~~~~~--~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n 465 (611)
+++|++++..|..+... .++++.+++++|...+... ..+.+.+..+..+..+..-.+++|++++|
T Consensus 219 Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-------------GHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-------------TCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred cCCCcccccchhhhhccccccceeeEeecccccccccc-------------chhhhccCcccccccccccCceEEEecCc
Confidence 66666666666655543 2567777777766543211 11122222222222222223466666888
Q ss_pred eeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCC
Q 047139 466 SINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGEN 545 (611)
Q Consensus 466 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 545 (611)
.+++..|..++.+++|++|++++|+++ +..|..++.+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQNEIN--------KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred cccccchhhcccCCCCCEEECCCCccc--------ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 888888888888889999988887765 344556677888999999999888777888888899999999999
Q ss_pred cCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCCc
Q 047139 546 QLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIPY 602 (611)
Q Consensus 546 ~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP~ 602 (611)
++++..|..+.. +++|++|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus 358 ~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 358 HIRALGDQSFLG-LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCCEECTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccccChhhccc-cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 988777777765 88999999999999876666678888999999999999888883
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.8e-41 Score=336.70 Aligned_cols=293 Identities=27% Similarity=0.445 Sum_probs=242.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--cccEEecCCC--CcEEEEeCCCCCCCCCCccccccccccee--
Q 047139 38 GCKEVEREALLQFKQNLTDPSGRLSSW-VGEDCCS--WRGVGCNNRT--GSIIMLNLNNPFRDSFDSYEDDAVHELRG-- 110 (611)
Q Consensus 38 ~~~~~~~~~ll~~k~~~~~~~~~~~~W-~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~l~~-- 110 (611)
.|.++|++||++||+++.+|. .+.+| .+.+||. |.||.|+..+ ++|++|++++ +.+.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~--------------~~l~~~~ 66 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------------LNLPKPY 66 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------------CCCSSCE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC--------------CCccCCc
Confidence 589999999999999998886 68899 5678998 9999998655 8999999999 78888
Q ss_pred eeCccccCCCCCCEEECCC-CCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCC
Q 047139 111 KISPSLLQLKDLEYLDLSL-NNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNS 189 (611)
Q Consensus 111 ~~~~~l~~l~~L~~L~ls~-n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 189 (611)
.+|..+.++++|++|++++ | .+.+.+|..++++++|++|++++|.+++.+|..|+++++|++|++++|.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n----------~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGIN----------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEET----------TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred ccChhHhCCCCCCeeeCCCCC----------cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc
Confidence 8899999999988887763 4 4457888889999999999999999988889889999999999999998
Q ss_pred CCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcc
Q 047139 190 FLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF 269 (611)
Q Consensus 190 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 269 (611)
+.+.+|..++++++|++|++++|.+++.+|..+..++ ++|++|++++|.+++.+|..+..++ |++|++++|.+
T Consensus 137 -l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-----~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 137 -LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-----KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp -EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-----TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred -cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-----hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6777888888899999999999998888888877664 2688888888888888888888887 88888888888
Q ss_pred cccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeec
Q 047139 270 LGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNI 349 (611)
Q Consensus 270 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 349 (611)
++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+.+.+|. .+..+++|++|++++|
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N--------- 278 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFN--------- 278 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSS---------
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh-HHhcCcCCCEEECcCC---------
Confidence 888888888888888888888888866665 77788888888888888877776 6777777777777763
Q ss_pred cCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcc
Q 047139 350 SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSAS 392 (611)
Q Consensus 350 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~ 392 (611)
.+.+.+|.. ..+++|+.+++++|.
T Consensus 279 ------------------~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 279 ------------------NLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ------------------EEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ------------------cccccCCCC-ccccccChHHhcCCC
Confidence 334444443 556667777777775
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.2e-40 Score=347.06 Aligned_cols=389 Identities=24% Similarity=0.335 Sum_probs=237.2
Q ss_pred EEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCC-------------CEEEccCCCCCcccccccCCC
Q 047139 135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSL-------------QLLDLSGNSFLEGQLSRNLGT 201 (611)
Q Consensus 135 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L-------------~~L~Ls~n~~~~~~~~~~l~~ 201 (611)
|++++|.+ +.+|.+++++++|++|++++|.+.|.+|.+++++++| ++|++++|.+ ++ +|..
T Consensus 16 L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~-lp~~--- 89 (454)
T 1jl5_A 16 PLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SS-LPEL--- 89 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SC-CCSC---
T ss_pred hhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-cc-CCCC---
Confidence 33344444 5788888888888888888888888888888888764 8888888884 33 4442
Q ss_pred CCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcc
Q 047139 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLT 281 (611)
Q Consensus 202 l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 281 (611)
.++|++|++++|.+++ +|..+ + +|++|++++|++++ +|.. .++|++|++++|++++ +| .+++++
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~~---~------~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPELP---Q------SLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCCC---T------TCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred cCCCCEEEccCCcCCc-ccccc---C------CCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 3688888888888887 45322 2 88888888888874 3322 2688888888888885 67 588888
Q ss_pred cCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeE
Q 047139 282 FLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRY 361 (611)
Q Consensus 282 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 361 (611)
+|++|++++|++++ +|..+ ++|++|++++|.+.+ +| .++++++|++|++++|....+. . ...+|++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~----~---~~~~L~~ 219 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLP----D---LPLSLES 219 (454)
T ss_dssp TCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCC----C---CCTTCCE
T ss_pred CCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCC----C---CcCcccE
Confidence 88888888888875 55443 478888888888877 45 4788888888888886543211 1 1247888
Q ss_pred EEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcc
Q 047139 362 LVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRF 441 (611)
Q Consensus 362 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~ 441 (611)
|++++|.+. .+|. +..+++|++|++++|++++ +|. ..++|++|++++|++++ +|... ..++.+++++|++
T Consensus 220 L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~~--~~L~~L~ls~N~l 289 (454)
T 1jl5_A 220 IVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPELP--QSLTFLDVSENIF 289 (454)
T ss_dssp EECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCC
T ss_pred EECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCccc--CcCCEEECcCCcc
Confidence 888888877 5664 7788888888888888875 443 23688888888888875 45432 4678888888888
Q ss_pred cccCCCCCCCcceeecCcccCCCCeeecccccchhcc-CCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcC
Q 047139 442 EGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNL-KQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSN 520 (611)
Q Consensus 442 ~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~ 520 (611)
++. |....+++. |++++|.+++ ++ .+ ++|++|++++|+++. +|.. +++|++|++++
T Consensus 290 ~~l-~~~~~~L~~-----L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~---------lp~~---~~~L~~L~L~~ 346 (454)
T 1jl5_A 290 SGL-SELPPNLYY-----LNASSNEIRS-LC----DLPPSLEELNVSNNKLIE---------LPAL---PPRLERLIASF 346 (454)
T ss_dssp SEE-SCCCTTCCE-----EECCSSCCSE-EC----CCCTTCCEEECCSSCCSC---------CCCC---CTTCCEEECCS
T ss_pred Ccc-cCcCCcCCE-----EECcCCcCCc-cc----CCcCcCCEEECCCCcccc---------cccc---CCcCCEEECCC
Confidence 762 222234444 4448887775 22 22 478888888777652 3332 46788888888
Q ss_pred CcccccCcccccCCCCCCEEECCCCcCcc--cChhHHhhcC-------------CCCcEEECcCCcCcc--cCCccccCC
Q 047139 521 NHLSGEIPPSLKNCSLMDSLDLGENQLSG--NIPAWIGESM-------------PSLSILRLRSNHFNG--TIPSELCKL 583 (611)
Q Consensus 521 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~~l-------------~~L~~L~ls~n~l~~--~~p~~l~~l 583 (611)
|+++ .+|. .+++|++|++++|++++ .+|.++.. + ++|++|++++|++++ .+|.
T Consensus 347 N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~-L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~----- 416 (454)
T 1jl5_A 347 NHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED-LRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE----- 416 (454)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-EECCC-----------------------------------
T ss_pred Cccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh-hhhcccccccccccCcCCEEECCCCcCCccccchh-----
Confidence 8887 4665 46778888888888887 66665543 3 556666666666654 3442
Q ss_pred CCCCEeeccCCcCccCCCcc
Q 047139 584 SALHILDLSHNNLLGPIPYC 603 (611)
Q Consensus 584 ~~L~~L~ls~n~l~g~iP~~ 603 (611)
+++.|.+.+|.+.+.+|..
T Consensus 417 -sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 417 -SVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp --------------------
T ss_pred -hHhheeCcCcccCCccccC
Confidence 2344455566655555544
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.4e-39 Score=342.19 Aligned_cols=365 Identities=23% Similarity=0.232 Sum_probs=264.6
Q ss_pred CCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCC-CccCCCCCCCCEEEccCCCCCccccccc
Q 047139 120 KDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDI-PDGFSSLNSLQLLDLSGNSFLEGQLSRN 198 (611)
Q Consensus 120 ~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 198 (611)
++|++|++++|. +++..|..+.++++|++|++++|.+.+.+ |..|.++++|++|++++|+ +.+..|..
T Consensus 30 ~~l~~L~Ls~n~----------i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNS----------IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGA 98 (455)
T ss_dssp TTCCEEECCSSC----------CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTT
T ss_pred CccCEEEecCCc----------cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhh
Confidence 566666666554 45567888999999999999999987555 5679999999999999999 66777889
Q ss_pred CCCCCCCCEEEcccccCCCccchh--hhcCcccCCCCCCcEEEccCCCCCccCCcc-cCCCCCCcEEEccCCcccccCCC
Q 047139 199 LGTLCNLQTLKLSLNQFSGEVSDF--IDGLSECINSSSLARLELGYNQLTGNLPIS-LGYLKNLRYLELWYNSFLGSIPP 275 (611)
Q Consensus 199 l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~ 275 (611)
++++++|++|++++|.+++..+.. +..++ +|++|++++|.+++..|.. +.++++|++|++++|.+++..|.
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLT------SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCT------TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcc------cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 999999999999999998865554 77776 9999999999999887776 78999999999999999988888
Q ss_pred CccCc--ccCceEEecCCccccCCCcC--------CCCCCCCCEEEccCCccccccChhhhcC---CCCCCEEEcCccCC
Q 047139 276 SLGNL--TFLEELYLTSNQMNGKFPES--------FGQLSAIRVLELSDNQWEGFITDAHLRN---LTSLEELSLIKTSN 342 (611)
Q Consensus 276 ~l~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~~l~~---l~~L~~L~l~~~~~ 342 (611)
.+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+.. +.. .++|+.|++++|..
T Consensus 173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECTTCTT
T ss_pred hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeeccccc
Confidence 88776 78999999999998654443 335678999999999888766652 322 24555555554322
Q ss_pred CCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHh-cCCCCCEEEccCcccccc
Q 047139 343 SSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQ-LNLTLDELDVGGNHLSGR 421 (611)
Q Consensus 343 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~-~~~~L~~L~ls~n~l~~~ 421 (611)
.+.. +..+.+.+..+..+.. ..++|+++++++|++.
T Consensus 252 ---------------------------~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-- 288 (455)
T 3v47_A 252 ---------------------------MGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-- 288 (455)
T ss_dssp ---------------------------TSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC--
T ss_pred ---------------------------cccc--------------cchhhhccCcccccccccccCceEEEecCcccc--
Confidence 1110 0000111110100000 0134555555555444
Q ss_pred cCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccc
Q 047139 422 IPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSG 501 (611)
Q Consensus 422 ~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g 501 (611)
+..|..+..++.| ++|++++|.+++..|..|..+++|++|++++|+++ +
T Consensus 289 ---------------------~~~~~~~~~l~~L--~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~ 337 (455)
T 3v47_A 289 ---------------------ALLKSVFSHFTDL--EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG--------S 337 (455)
T ss_dssp ---------------------EECTTTTTTCTTC--CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------E
T ss_pred ---------------------ccchhhcccCCCC--CEEECCCCcccccChhHhcCcccCCEEECCCCccC--------C
Confidence 4444444444443 55666888888777778888888888888887654 2
Q ss_pred cCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCC
Q 047139 502 EIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIP 577 (611)
Q Consensus 502 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p 577 (611)
..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++ +|...+..+++|++|++++|++++.+|
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcccCCC
Confidence 345666778888888888888887778888888888888888888884 555444458888888888888888777
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.4e-39 Score=340.81 Aligned_cols=384 Identities=21% Similarity=0.227 Sum_probs=269.6
Q ss_pred CCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCC-------------CEEEcccccCCCc
Q 047139 152 NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNL-------------QTLKLSLNQFSGE 218 (611)
Q Consensus 152 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L-------------~~L~l~~n~l~~~ 218 (611)
+.++|++|++++|.+ +.+|++++++++|++|++++|. +.+.+|..++++++| ++|++++|.+++.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 468999999999999 7999999999999999999999 788999999998875 9999999998863
Q ss_pred cchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCC
Q 047139 219 VSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFP 298 (611)
Q Consensus 219 ~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 298 (611)
|.. .+ +|++|++++|.+++ +|.. .++|++|++++|++++ +|.. .++|++|++++|.+++ +|
T Consensus 87 -p~~---~~------~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 87 -PEL---PP------HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp -CSC---CT------TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC
T ss_pred -CCC---cC------CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc
Confidence 221 12 89999999999996 6654 4789999999999985 4432 2689999999999996 77
Q ss_pred cCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhcc
Q 047139 299 ESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLR 378 (611)
Q Consensus 299 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 378 (611)
.++++++|++|++++|++++ +|. ..++|++|++++|.... ++ .+..+++|+.|++++|.+.+ +|..
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~----l~-~~~~l~~L~~L~l~~N~l~~-l~~~-- 213 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEE----LP-ELQNLPFLTAIYADNNSLKK-LPDL-- 213 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS----CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred -ccCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCc----Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence 59999999999999999987 453 23699999999965533 23 57788999999999999886 4443
Q ss_pred CCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecC
Q 047139 379 NQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLR 458 (611)
Q Consensus 379 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~ 458 (611)
.++|++|++++|.++ .+|. +. .+++|++|++++|++++ +|... ..++.+++++|++++ +|..+.+++.+++
T Consensus 214 -~~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~N~l~~-l~~~~~~L~~L~l- 284 (454)
T 1jl5_A 214 -PLSLESIVAGNNILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LPDLP--PSLEALNVRDNYLTD-LPELPQSLTFLDV- 284 (454)
T ss_dssp -CTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CCSCC--TTCCEEECCSSCCSC-CCCCCTTCCEEEC-
T ss_pred -cCcccEEECcCCcCC-cccc-cC-CCCCCCEEECCCCcCCc-ccccc--cccCEEECCCCcccc-cCcccCcCCEEEC-
Confidence 258999999999998 6775 33 46899999999999985 55432 579999999999987 6666655555544
Q ss_pred cccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCC
Q 047139 459 DLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMD 538 (611)
Q Consensus 459 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 538 (611)
++|.+++. |.. .++|++|++++|+++.+ +.. .++|++|++++|++++ +|.. +++|+
T Consensus 285 ----s~N~l~~l-~~~---~~~L~~L~l~~N~l~~i---------~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~ 340 (454)
T 1jl5_A 285 ----SENIFSGL-SEL---PPNLYYLNASSNEIRSL---------CDL---PPSLEELNVSNNKLIE-LPAL---PPRLE 340 (454)
T ss_dssp ----CSSCCSEE-SCC---CTTCCEEECCSSCCSEE---------CCC---CTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred ----cCCccCcc-cCc---CCcCCEEECcCCcCCcc---------cCC---cCcCCEEECCCCcccc-cccc---CCcCC
Confidence 99999862 221 26899999999987632 210 1489999999999996 6654 58999
Q ss_pred EEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcc--cCCccccCC-------------CCCCEeeccCCcCcc--CCC
Q 047139 539 SLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG--TIPSELCKL-------------SALHILDLSHNNLLG--PIP 601 (611)
Q Consensus 539 ~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~--~~p~~l~~l-------------~~L~~L~ls~n~l~g--~iP 601 (611)
+|++++|+++ .+|. .+++|++|++++|++++ .+|.++..+ ++|++|++++|+++| .||
T Consensus 341 ~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 341 RLIASFNHLA-EVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp EEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred EEECCCCccc-cccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 9999999999 6887 28999999999999999 789888877 889999999999998 999
Q ss_pred ccccccC
Q 047139 602 YCVGDFS 608 (611)
Q Consensus 602 ~~~~~~~ 608 (611)
.++.++.
T Consensus 416 ~sl~~L~ 422 (454)
T 1jl5_A 416 ESVEDLR 422 (454)
T ss_dssp -------
T ss_pred hhHhhee
Confidence 9887664
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-37 Score=327.19 Aligned_cols=365 Identities=18% Similarity=0.154 Sum_probs=240.1
Q ss_pred eeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCC
Q 047139 109 RGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGN 188 (611)
Q Consensus 109 ~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n 188 (611)
.+..+.+++++++|++|++++|.++ + +| .+..+++|++|++++|.+++. | ++.+++|++|++++|
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~----------~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N 95 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSIT----------D-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSN 95 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCC----------C-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSS
T ss_pred CcccccChhHcCCCCEEEccCCCcc----------c-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCC
Confidence 3334446677777777777776554 2 34 577788888888888888753 3 778888888888888
Q ss_pred CCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCc
Q 047139 189 SFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNS 268 (611)
Q Consensus 189 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 268 (611)
+ +++ ++ ++++++|++|++++|.+++. + ++.++ +|++|++++|++++. + ++.+++|++|++++|+
T Consensus 96 ~-l~~-~~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~------~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 96 K-LTN-LD--VTPLTKLTYLNCDTNKLTKL-D--VSQNP------LLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp C-CSC-CC--CTTCTTCCEEECCSSCCSCC-C--CTTCT------TCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCS
T ss_pred C-Cce-ee--cCCCCcCCEEECCCCcCCee-c--CCCCC------cCCEEECCCCcccee-c--cccCCcCCEEECCCCC
Confidence 7 343 33 77788888888888877763 2 44444 778888888877753 2 6677777788877775
Q ss_pred ccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceee
Q 047139 269 FLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFN 348 (611)
Q Consensus 269 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 348 (611)
..+.+ .+..+++|++|++++|.+++ +| +..+++|++|++++|.+++. .++.+++|+.|++++
T Consensus 160 ~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~--------- 221 (457)
T 3bz5_A 160 KITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSS--------- 221 (457)
T ss_dssp CCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCS---------
T ss_pred ccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcC---------
Confidence 55454 36677777777777777775 33 66777777777777777653 255556666666555
Q ss_pred ccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCccccc
Q 047139 349 ISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVF 428 (611)
Q Consensus 349 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 428 (611)
|.+.+ +| +..+++|+.|++++|++++..+. .+++|+.+++++|+
T Consensus 222 ------------------N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~----~l~~L~~L~l~~n~----------- 265 (457)
T 3bz5_A 222 ------------------NKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS----TLSKLTTLHCIQTD----------- 265 (457)
T ss_dssp ------------------SCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT----TCTTCCEEECTTCC-----------
T ss_pred ------------------Ccccc-cC--ccccCCCCEEEeeCCcCCCcCHH----HCCCCCEEeccCCC-----------
Confidence 33343 33 45566666666666666654322 23566666666553
Q ss_pred CCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCccccc
Q 047139 429 RFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG 508 (611)
Q Consensus 429 ~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~ 508 (611)
++.+++++|.+.+.+|. ..+..| ++|++++|...+.+|. ..++|+.|++++
T Consensus 266 --L~~L~l~~n~~~~~~~~--~~l~~L--~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~-------------------- 316 (457)
T 3bz5_A 266 --LLEIDLTHNTQLIYFQA--EGCRKI--KELDVTHNTQLYLLDC---QAAGITELDLSQ-------------------- 316 (457)
T ss_dssp --CSCCCCTTCTTCCEEEC--TTCTTC--CCCCCTTCTTCCEEEC---TTCCCSCCCCTT--------------------
T ss_pred --CCEEECCCCccCCcccc--cccccC--CEEECCCCcccceecc---CCCcceEechhh--------------------
Confidence 33556666666666552 233333 4555577776666663 334555555544
Q ss_pred CcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCE
Q 047139 509 SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHI 588 (611)
Q Consensus 509 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 588 (611)
+++|++|++++|++++. + +.++++|+.|++++|++++ ++.|+.|++++|.+.|. +.+..|+.
T Consensus 317 -~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~ 378 (457)
T 3bz5_A 317 -NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPK 378 (457)
T ss_dssp -CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCC
T ss_pred -cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCc
Confidence 34788888888888863 3 7788888888888888874 34556667788888775 24456777
Q ss_pred eeccCCcCccCCCcccc
Q 047139 589 LDLSHNNLLGPIPYCVG 605 (611)
Q Consensus 589 L~ls~n~l~g~iP~~~~ 605 (611)
+++++|+++|.||..+.
T Consensus 379 l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 379 ETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp BCCBTTBEEEECCTTCB
T ss_pred cccccCcEEEEcChhHh
Confidence 78888888888887543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-35 Score=315.35 Aligned_cols=378 Identities=27% Similarity=0.350 Sum_probs=231.6
Q ss_pred CCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccccc
Q 047139 119 LKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRN 198 (611)
Q Consensus 119 l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 198 (611)
+++++.|+++++.++ .+| .+..+++|++|++++|.+++. |. ++++++|++|++++|. +.+.. .
T Consensus 45 l~~l~~L~l~~~~i~-----------~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~-l~~~~-~- 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-----------SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQ-IADIT-P- 107 (466)
T ss_dssp HHTCCEEECCSSCCC-----------CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC-CCCCG-G-
T ss_pred hccccEEecCCCCCc-----------cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCc-cccCh-h-
Confidence 445666666555443 233 266677777777777777643 33 7777777777777776 33322 2
Q ss_pred CCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCcc
Q 047139 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLG 278 (611)
Q Consensus 199 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 278 (611)
++++++|++|++++|.+++..+ +..++ +|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+. + .+.
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~ 174 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP--LKNLT------NLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLA 174 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCT------TCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGT
T ss_pred hcCCCCCCEEECCCCCCCCChH--HcCCC------CCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhc
Confidence 6677777777777776665433 44444 66677776666653 22 36666667776665 333322 2 266
Q ss_pred CcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcc
Q 047139 279 NLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFK 358 (611)
Q Consensus 279 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 358 (611)
++++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|..
T Consensus 175 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l---------------- 233 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQL---------------- 233 (466)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCC----------------
T ss_pred cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCc----------------
Confidence 666666666666666532 235566666666666666655332 44455555555555322
Q ss_pred eeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccC
Q 047139 359 LRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSS 438 (611)
Q Consensus 359 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~ 438 (611)
.+. ..+..+++|++|++++|.+.+..| ...+++|+.|++++|++++..+
T Consensus 234 -----------~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--------------- 282 (466)
T 1o6v_A 234 -----------KDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--------------- 282 (466)
T ss_dssp -----------CCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG---------------
T ss_pred -----------ccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc---------------
Confidence 211 234555666666666666655443 2223566666666665553221
Q ss_pred CcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEEC
Q 047139 439 NRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVL 518 (611)
Q Consensus 439 n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~L 518 (611)
+..+..| ++|++++|.+++..+ +..+++|++|++++|+++++ ++ +..+++|++|++
T Consensus 283 ----------~~~l~~L--~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~---------~~-~~~l~~L~~L~l 338 (466)
T 1o6v_A 283 ----------LAGLTAL--TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI---------SP-VSSLTKLQRLFF 338 (466)
T ss_dssp ----------GTTCTTC--SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC---------GG-GGGCTTCCEEEC
T ss_pred ----------ccCCCcc--CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc---------hh-hccCccCCEeEC
Confidence 1122222 444457777765444 78899999999999887632 22 567899999999
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCcccc-------CCCCCCEeec
Q 047139 519 SNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELC-------KLSALHILDL 591 (611)
Q Consensus 519 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~-------~l~~L~~L~l 591 (611)
++|++++. ..+..+++|+.|++++|++++..| +. .+++|++|++++|++++ +|..+. .+..+....+
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~~~~-~p~~~~~~~~ip~~~~~~~~~~~ 412 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA-NLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALI 412 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT-TCTTCCEEECCCEEEEC-CCBCCCSEEEEECCCBCTTSCBC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh-cCCCCCEEeccCCcccC-CchhhcccceecccccccCCCee
Confidence 99999865 478899999999999999997776 44 49999999999999986 343321 1233344455
Q ss_pred cCCcCcc----CCCccccccC
Q 047139 592 SHNNLLG----PIPYCVGDFS 608 (611)
Q Consensus 592 s~n~l~g----~iP~~~~~~~ 608 (611)
+.+.++. .+|.++.++.
T Consensus 413 ~~~~is~~g~~~~~~~~w~~~ 433 (466)
T 1o6v_A 413 APATISDGGSYTEPDITWNLP 433 (466)
T ss_dssp CCSEESTTCEEETTEEEEECC
T ss_pred cCceecCCcEEeCCceEECCC
Confidence 5555543 4666655543
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.8e-36 Score=320.33 Aligned_cols=408 Identities=18% Similarity=0.158 Sum_probs=303.7
Q ss_pred CCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEE
Q 047139 81 TGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLD 160 (611)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 160 (611)
-.+++.+++++ +.+.+. | .+..+++|++|++++|+++. +| ++.+++|++|+
T Consensus 41 l~~L~~L~Ls~--------------n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-----------~~--~~~l~~L~~L~ 91 (457)
T 3bz5_A 41 LATLTSLDCHN--------------SSITDM-T-GIEKLTGLTKLICTSNNITT-----------LD--LSQNTNLTYLA 91 (457)
T ss_dssp HTTCCEEECCS--------------SCCCCC-T-TGGGCTTCSEEECCSSCCSC-----------CC--CTTCTTCSEEE
T ss_pred cCCCCEEEccC--------------CCcccC-h-hhcccCCCCEEEccCCcCCe-----------Ec--cccCCCCCEEE
Confidence 35788889888 778764 4 79999999999999887752 33 78899999999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEc
Q 047139 161 LSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLEL 240 (611)
Q Consensus 161 L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L 240 (611)
+++|.+++. | ++++++|++|++++|++ ++ ++ ++++++|++|++++|.+++. + ++.++ +|++|++
T Consensus 92 Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l-~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~------~L~~L~l 155 (457)
T 3bz5_A 92 CDSNKLTNL-D--VTPLTKLTYLNCDTNKL-TK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNT------QLTELDC 155 (457)
T ss_dssp CCSSCCSCC-C--CTTCTTCCEEECCSSCC-SC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCT------TCCEEEC
T ss_pred CcCCCCcee-e--cCCCCcCCEEECCCCcC-Ce-ec--CCCCCcCCEEECCCCcccee-c--cccCC------cCCEEEC
Confidence 999999964 4 89999999999999994 44 44 89999999999999999985 2 55555 9999999
Q ss_pred cCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccc
Q 047139 241 GYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGF 320 (611)
Q Consensus 241 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 320 (611)
++|+..+.+ .+..+++|++|++++|++++ +| +..+++|++|++++|.+++. .++.+++|++|++++|++++
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence 999766666 57889999999999999996 45 88999999999999999875 38899999999999999998
Q ss_pred cChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchh
Q 047139 321 ITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSW 400 (611)
Q Consensus 321 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~ 400 (611)
+| +..+++|+.|++++|..... ....+++|+.|+++++ +|+.|++++|.+.+.+|.
T Consensus 227 ip---~~~l~~L~~L~l~~N~l~~~------~~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~- 282 (457)
T 3bz5_A 227 ID---VTPLTQLTYFDCSVNPLTEL------DVSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA- 282 (457)
T ss_dssp CC---CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC-
T ss_pred cC---ccccCCCCEEEeeCCcCCCc------CHHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc-
Confidence 44 78899999999999654322 1334567777776654 567778888887777773
Q ss_pred HHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCC
Q 047139 401 FLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQ 480 (611)
Q Consensus 401 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~ 480 (611)
..+++|+.|++++|...+.+|.. ...++.+++++| .++ ++|++++|++++. + ++++++
T Consensus 283 --~~l~~L~~L~Ls~n~~l~~l~~~--~~~L~~L~l~~~----------~~L-----~~L~L~~N~l~~l-~--l~~l~~ 340 (457)
T 3bz5_A 283 --EGCRKIKELDVTHNTQLYLLDCQ--AAGITELDLSQN----------PKL-----VYLYLNNTELTEL-D--VSHNTK 340 (457)
T ss_dssp --TTCTTCCCCCCTTCTTCCEEECT--TCCCSCCCCTTC----------TTC-----CEEECTTCCCSCC-C--CTTCTT
T ss_pred --cccccCCEEECCCCcccceeccC--CCcceEechhhc----------ccC-----CEEECCCCccccc-c--cccCCc
Confidence 23478888888888877777642 235666666655 223 5556699999874 3 888999
Q ss_pred CCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCC
Q 047139 481 LLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMP 560 (611)
Q Consensus 481 L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~ 560 (611)
|+.|++++|++++ ++.|+.|++++|.+.|. ..+..|+.+++++|+++|.+|..+.....
T Consensus 341 L~~L~l~~N~l~~----------------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~ 399 (457)
T 3bz5_A 341 LKSLSCVNAHIQD----------------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFG 399 (457)
T ss_dssp CSEEECCSSCCCB----------------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTS
T ss_pred CcEEECCCCCCCC----------------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccC
Confidence 9999998887763 23566677888888876 24556778899999999999887665445
Q ss_pred CCcEEECcCCcCcccCCc--cccCCC-----CCCEeeccCCcCccCCCccccccCC
Q 047139 561 SLSILRLRSNHFNGTIPS--ELCKLS-----ALHILDLSHNNLLGPIPYCVGDFSA 609 (611)
Q Consensus 561 ~L~~L~ls~n~l~~~~p~--~l~~l~-----~L~~L~ls~n~l~g~iP~~~~~~~~ 609 (611)
++.....+.+........ .+.+.+ -+.....++|.++|.|++.+.....
T Consensus 400 ~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~~~~~~ 455 (457)
T 3bz5_A 400 NPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQP 455 (457)
T ss_dssp CCCEEEESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEBC----
T ss_pred ceeeccCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEeccccccccc
Confidence 555555444322211110 111111 2333344578999999887665443
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.9e-34 Score=302.68 Aligned_cols=344 Identities=30% Similarity=0.423 Sum_probs=265.3
Q ss_pred CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEc
Q 047139 82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDL 161 (611)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 161 (611)
.+++.+++.+ +++.. +| .+..+++|++|++++|.++ .+|. +.++++|++|++
T Consensus 46 ~~l~~L~l~~--------------~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-----------~~~~-~~~l~~L~~L~l 97 (466)
T 1o6v_A 46 DQVTTLQADR--------------LGIKS-ID-GVEYLNNLTQINFSNNQLT-----------DITP-LKNLTKLVDILM 97 (466)
T ss_dssp HTCCEEECCS--------------SCCCC-CT-TGGGCTTCCEEECCSSCCC-----------CCGG-GTTCTTCCEEEC
T ss_pred ccccEEecCC--------------CCCcc-Cc-chhhhcCCCEEECCCCccC-----------Cchh-hhccccCCEEEC
Confidence 4678888887 45543 33 4788999999998888765 3344 899999999999
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEcc
Q 047139 162 SSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELG 241 (611)
Q Consensus 162 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls 241 (611)
++|.+.+..| ++++++|++|++++|.+ .+ ++. +.++++|++|++++|.+.+.. .+..++ +|++|+++
T Consensus 98 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l-~~-~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~------~L~~L~l~ 164 (466)
T 1o6v_A 98 NNNQIADITP--LANLTNLTGLTLFNNQI-TD-IDP-LKNLTNLNRLELSSNTISDIS--ALSGLT------SLQQLSFG 164 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCC-CC-CGG-GTTCTTCSEEEEEEEEECCCG--GGTTCT------TCSEEEEE
T ss_pred CCCccccChh--hcCCCCCCEEECCCCCC-CC-ChH-HcCCCCCCEEECCCCccCCCh--hhccCC------cccEeecC
Confidence 9999996544 99999999999999994 44 333 899999999999999988642 366665 99999997
Q ss_pred CCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccccc
Q 047139 242 YNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFI 321 (611)
Q Consensus 242 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 321 (611)
+.+.+.. .+.++++|++|++++|.+++. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+.+.
T Consensus 165 -~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 236 (466)
T 1o6v_A 165 -NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI- 236 (466)
T ss_dssp -ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred -CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-
Confidence 5555332 388999999999999998754 348899999999999999987555 77899999999999998763
Q ss_pred ChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhH
Q 047139 322 TDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWF 401 (611)
Q Consensus 322 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~ 401 (611)
+ .+..+++|+.|++++|.. .+..+ +..+++|++|++++|.+++..+
T Consensus 237 ~--~l~~l~~L~~L~l~~n~l---------------------------~~~~~--~~~l~~L~~L~l~~n~l~~~~~--- 282 (466)
T 1o6v_A 237 G--TLASLTNLTDLDLANNQI---------------------------SNLAP--LSGLTKLTELKLGANQISNISP--- 282 (466)
T ss_dssp G--GGGGCTTCSEEECCSSCC---------------------------CCCGG--GTTCTTCSEEECCSSCCCCCGG---
T ss_pred h--hhhcCCCCCEEECCCCcc---------------------------ccchh--hhcCCCCCEEECCCCccCcccc---
Confidence 2 577788888888887433 22222 5667778888888887776544
Q ss_pred HhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCC
Q 047139 402 LQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQL 481 (611)
Q Consensus 402 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L 481 (611)
...+++|+.|++++|++.+..+ +.. +.++ ++|++++|.+++..| +..+++|
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~--~~~--------------------l~~L-----~~L~L~~n~l~~~~~--~~~l~~L 333 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP--ISN--------------------LKNL-----TYLTLYFNNISDISP--VSSLTKL 333 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG--GGG--------------------CTTC-----SEEECCSSCCSCCGG--GGGCTTC
T ss_pred ccCCCccCeEEcCCCcccCchh--hcC--------------------CCCC-----CEEECcCCcCCCchh--hccCccC
Confidence 2335678888887777764322 110 1222 444447777776555 6789999
Q ss_pred CeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcc
Q 047139 482 LTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG 549 (611)
Q Consensus 482 ~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 549 (611)
++|++++|+++++ +.+..+++|+.|++++|++++..| +..+++|+.|++++|.+++
T Consensus 334 ~~L~l~~n~l~~~----------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 334 QRLFFYNNKVSDV----------SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CEeECCCCccCCc----------hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999999988743 356779999999999999998777 8999999999999999985
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-33 Score=292.12 Aligned_cols=176 Identities=16% Similarity=0.117 Sum_probs=107.6
Q ss_pred CCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccc
Q 047139 118 QLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR 197 (611)
Q Consensus 118 ~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~ 197 (611)
.++++++|+++++.+ +...+..+.++++|++|++++|.+++..+..|+++++|++|++++|. +.+..|.
T Consensus 43 ~l~~l~~l~l~~~~l----------~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM----------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCEE----------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCceEEEecCCch----------hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHH
Confidence 455566655555544 33333446778888888888888876666678888888888888887 5555566
Q ss_pred cCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCc
Q 047139 198 NLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL 277 (611)
Q Consensus 198 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 277 (611)
.++++++|++|++++|.++...+..+..++ +|++|++++|.+++..|..+..+++|++|++++|++++. .+
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~ 182 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTP------KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DL 182 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CG
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCC------CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cc
Confidence 677777777777777777654444455555 666666666666655555566666666666666665532 23
Q ss_pred cCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccc
Q 047139 278 GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 318 (611)
Q Consensus 278 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 318 (611)
..+++|++|++++|.+++. ...++|++|++++|.+.
T Consensus 183 ~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSIN 218 (390)
T ss_dssp GGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCC
T ss_pred ccccccceeeccccccccc-----CCCCcceEEECCCCeee
Confidence 4445555555555554421 12234555555555443
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=297.62 Aligned_cols=177 Identities=25% Similarity=0.280 Sum_probs=82.2
Q ss_pred CCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCC
Q 047139 155 NLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSS 234 (611)
Q Consensus 155 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~ 234 (611)
++++|++++|++++..|..|.++++|++|++++|. +.+..|..|.++++|++|++++|.+++..+..+..++ +
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~ 105 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS------N 105 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT------T
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC------C
Confidence 44444444444444444444444444444444444 3333344444444444444444444443333333333 4
Q ss_pred CcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccC
Q 047139 235 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSD 314 (611)
Q Consensus 235 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 314 (611)
|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+.++++|+.|++++
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 44444444444444444444555555555555555444444455555555555555555443333444555555555555
Q ss_pred CccccccChhhhcCCCCCCEEEcCc
Q 047139 315 NQWEGFITDAHLRNLTSLEELSLIK 339 (611)
Q Consensus 315 n~l~~~~~~~~l~~l~~L~~L~l~~ 339 (611)
|.+.+..+. .+..+++|+.|++++
T Consensus 186 n~i~~~~~~-~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 186 LNINAIRDY-SFKRLYRLKVLEISH 209 (477)
T ss_dssp CCCCEECTT-CSCSCTTCCEEEEEC
T ss_pred CcCcEeChh-hcccCcccceeeCCC
Confidence 554442222 344444444444444
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.7e-33 Score=295.77 Aligned_cols=320 Identities=21% Similarity=0.216 Sum_probs=218.2
Q ss_pred CCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCC
Q 047139 156 LLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235 (611)
Q Consensus 156 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L 235 (611)
-+.++.+++.++ .+|..+. +++++|++++|+ +.+..+..|.++++|++|++++|.+++..|..+..++ +|
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~------~L 82 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF------NL 82 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT------TC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc------cC
Confidence 357788888887 6676554 689999999999 6666778999999999999999999999899998888 99
Q ss_pred cEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCC
Q 047139 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDN 315 (611)
Q Consensus 236 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 315 (611)
++|++++|++++..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 99999999999766677899999999999999999888889999999999999999999888889999999999999999
Q ss_pred ccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccccc
Q 047139 316 QWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISD 395 (611)
Q Consensus 316 ~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 395 (611)
.+++ ++...+.++++|+.|++++|.. .. ..+..+..+++|++|++++|...+
T Consensus 163 ~l~~-~~~~~l~~l~~L~~L~l~~n~i---~~------------------------~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 163 NLTS-IPTEALSHLHGLIVLRLRHLNI---NA------------------------IRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp CCSS-CCHHHHTTCTTCCEEEEESCCC---CE------------------------ECTTCSCSCTTCCEEEEECCTTCC
T ss_pred cCcc-cChhHhcccCCCcEEeCCCCcC---cE------------------------eChhhcccCcccceeeCCCCcccc
Confidence 9986 4555788888888888888433 22 222334444555555555555444
Q ss_pred ccchhHHhcCCCCCEEEccCcccccccC-cccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccc
Q 047139 396 TLPSWFLQLNLTLDELDVGGNHLSGRIP-NTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQS 474 (611)
Q Consensus 396 ~~p~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~ 474 (611)
.+|...... .+|++|++++|++++ +| ..+. .+..| ++|++++|.+++..+..
T Consensus 215 ~~~~~~~~~-~~L~~L~l~~n~l~~-~~~~~~~-----------------------~l~~L--~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 215 TMTPNCLYG-LNLTSLSITHCNLTA-VPYLAVR-----------------------HLVYL--RFLNLSYNPISTIEGSM 267 (477)
T ss_dssp EECTTTTTT-CCCSEEEEESSCCCS-CCHHHHT-----------------------TCTTC--CEEECCSSCCCEECTTS
T ss_pred ccCcccccC-ccccEEECcCCcccc-cCHHHhc-----------------------Ccccc--CeeECCCCcCCccChhh
Confidence 444433322 245555555554442 22 1111 11111 22222444444444444
Q ss_pred hhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCc
Q 047139 475 VGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS 548 (611)
Q Consensus 475 l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 548 (611)
|..+++|++|++++|+++. ..|..+..+++|++|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAV--------VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCTTCCEEECCSSCCSE--------ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccccCCEEECCCCccce--------ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 4555555555555544332 22334444555555555555555444444555555555555555554
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-32 Score=300.47 Aligned_cols=168 Identities=17% Similarity=0.126 Sum_probs=111.4
Q ss_pred EccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccC
Q 047139 136 DLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF 215 (611)
Q Consensus 136 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 215 (611)
++++|.+.+..+..+.++++|++|++++|.+++..|..|+.+++|++|++++|. +.+..|..++++++|++|++++|.+
T Consensus 57 ~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp EESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 333344444445567788888888888888887777788888888888888888 5666666677788888888888877
Q ss_pred CCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCcccc
Q 047139 216 SGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG 295 (611)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 295 (611)
++..+..+..++ +|++|++++|.+++..|..+..+++|++|++++|.+++. .++.+++|+.|++++|.+++
T Consensus 136 ~~l~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 136 SSLPRGIFHNTP------KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCCCTTTTTTCT------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCHHHhccCC------CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc
Confidence 766555556555 677777777777666666666666777777776666643 13445566666666665543
Q ss_pred CCCcCCCCCCCCCEEEccCCccc
Q 047139 296 KFPESFGQLSAIRVLELSDNQWE 318 (611)
Q Consensus 296 ~~~~~l~~l~~L~~L~L~~n~l~ 318 (611)
+...++|+.|++++|.+.
T Consensus 207 -----l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSIN 224 (597)
T ss_dssp -----EECCTTCSEEECCSSCCC
T ss_pred -----ccCCchhheeeccCCccc
Confidence 122334555555555544
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=5.7e-34 Score=288.32 Aligned_cols=267 Identities=21% Similarity=0.273 Sum_probs=234.6
Q ss_pred CCCCHHHHHHHHHHHhcC-CCCCCCCCCCC-----CCCCCCcccEEec--------CCCCcEEEEeCCCCCCCCCCcccc
Q 047139 37 SGCKEVEREALLQFKQNL-TDPSGRLSSWV-----GEDCCSWRGVGCN--------NRTGSIIMLNLNNPFRDSFDSYED 102 (611)
Q Consensus 37 ~~~~~~~~~~ll~~k~~~-~~~~~~~~~W~-----~~~~c~w~gv~c~--------~~~~~v~~l~l~~~~~~~~~~~~~ 102 (611)
..+..+|++||++||+++ .+|.+....|. ..++|.|.|+.|+ ....+|+.|++++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~----------- 90 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS----------- 90 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES-----------
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC-----------
Confidence 345678999999999998 47766677882 5678999999995 2347899999998
Q ss_pred cccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCE
Q 047139 103 DAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQL 182 (611)
Q Consensus 103 ~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 182 (611)
+++. .+|+.++++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|++
T Consensus 91 ---n~l~-~lp~~l~~l~~L~~L~L~~n~l~-----------~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 91 ---VPLP-QFPDQAFRLSHLQHMTIDAAGLM-----------ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp ---SCCS-SCCSCGGGGTTCSEEEEESSCCC-----------CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred ---CCch-hcChhhhhCCCCCEEECCCCCcc-----------chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 6776 78888999999999888877654 67888999999999999999999 88999999999999
Q ss_pred EEccCCCCCcccccccCCC---------CCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCccc
Q 047139 183 LDLSGNSFLEGQLSRNLGT---------LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL 253 (611)
Q Consensus 183 L~Ls~n~~~~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l 253 (611)
|++++|. ..+.+|..++. +++|++|++++|.++ .+|..+..++ +|++|++++|.++ .+|..+
T Consensus 155 L~L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~------~L~~L~L~~N~l~-~l~~~l 225 (328)
T 4fcg_A 155 LSIRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ------NLKSLKIRNSPLS-ALGPAI 225 (328)
T ss_dssp EEEEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT------TCCEEEEESSCCC-CCCGGG
T ss_pred EECCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC------CCCEEEccCCCCC-cCchhh
Confidence 9999988 56778877764 999999999999998 7788888887 9999999999999 467789
Q ss_pred CCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCC
Q 047139 254 GYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLE 333 (611)
Q Consensus 254 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 333 (611)
..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|++.+.+|. .+..+++|+
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~ 304 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANC 304 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTC
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 799999999
Q ss_pred EEEcCcc
Q 047139 334 ELSLIKT 340 (611)
Q Consensus 334 ~L~l~~~ 340 (611)
.+++..+
T Consensus 305 ~l~l~~~ 311 (328)
T 4fcg_A 305 IILVPPH 311 (328)
T ss_dssp EEECCGG
T ss_pred EEeCCHH
Confidence 9998873
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-31 Score=278.10 Aligned_cols=151 Identities=18% Similarity=0.201 Sum_probs=111.7
Q ss_pred CCCCCEEEccCCCCCccccccc-CCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCC
Q 047139 177 LNSLQLLDLSGNSFLEGQLSRN-LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGY 255 (611)
Q Consensus 177 l~~L~~L~Ls~n~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~ 255 (611)
++++++|++++|.+ . .+|.. +.++++|++|++++|.+++..+..+..++ +|++|++++|.+++..|..+.+
T Consensus 44 l~~l~~l~l~~~~l-~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNSTM-R-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GCCCSEEEEESCEE-S-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCceEEEecCCch-h-hCChhHhcccccCcEEECCCCcccccChhhccCCC------CcCEEECCCCCCCcCCHHHhcC
Confidence 57889999998873 3 34443 67788888888888888877777777776 8888888888888777777888
Q ss_pred CCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEE
Q 047139 256 LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEEL 335 (611)
Q Consensus 256 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 335 (611)
+++|++|++++|.++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|+.|
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L 191 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHA 191 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEE
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----cccccccccee
Confidence 88888888888888743333457788888888888888776677777788888888888877653 23445555555
Q ss_pred EcCc
Q 047139 336 SLIK 339 (611)
Q Consensus 336 ~l~~ 339 (611)
++++
T Consensus 192 ~l~~ 195 (390)
T 3o6n_A 192 NVSY 195 (390)
T ss_dssp ECCS
T ss_pred eccc
Confidence 5555
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-31 Score=291.10 Aligned_cols=311 Identities=19% Similarity=0.184 Sum_probs=187.9
Q ss_pred CCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCC
Q 047139 177 LNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYL 256 (611)
Q Consensus 177 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l 256 (611)
+.+++.+++++|. +....+..+.++++|++|++++|.+++..+..++.++ +|++|++++|.+++..|..|+.+
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC------CCCEEECCCCcCCCCCHHHHcCC
Confidence 4677888888776 3332233355667777777777776666665666555 66666666666665555556666
Q ss_pred CCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEE
Q 047139 257 KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELS 336 (611)
Q Consensus 257 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 336 (611)
++|++|++++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|++++|.+.+. +
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-------------- 187 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D-------------- 187 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--------------
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--------------
Confidence 6666666666666643333345666666666666666655555555666666666665554431 0
Q ss_pred cCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCc
Q 047139 337 LIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGN 416 (611)
Q Consensus 337 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n 416 (611)
+..+++|+.|++++|.+++.. ..++|+.|++++|
T Consensus 188 ----------------------------------------~~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n 221 (597)
T 3oja_B 188 ----------------------------------------LSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHN 221 (597)
T ss_dssp ----------------------------------------GGGCTTCSEEECCSSCCSEEE------CCTTCSEEECCSS
T ss_pred ----------------------------------------hhhhhhhhhhhcccCcccccc------CCchhheeeccCC
Confidence 223456777777777776432 1246777777777
Q ss_pred ccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCC
Q 047139 417 HLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTN 496 (611)
Q Consensus 417 ~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~ 496 (611)
.+....+ ....++ +.|++++|.+++ +..+..+++|++|++++|.++
T Consensus 222 ~l~~~~~-----------------------~~~~~L-----~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~---- 267 (597)
T 3oja_B 222 SINVVRG-----------------------PVNVEL-----TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE---- 267 (597)
T ss_dssp CCCEEEC-----------------------SCCSCC-----CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC----
T ss_pred ccccccc-----------------------ccCCCC-----CEEECCCCCCCC--ChhhccCCCCCEEECCCCccC----
Confidence 6653221 111222 333336666654 345666777777776665543
Q ss_pred CcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccC
Q 047139 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTI 576 (611)
Q Consensus 497 n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~ 576 (611)
+.+|..++.+++|++|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|.++.. +++|++|++++|++++.
T Consensus 268 ----~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~-l~~L~~L~L~~N~l~~~- 339 (597)
T 3oja_B 268 ----KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTL- 339 (597)
T ss_dssp ----EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCCCC-
T ss_pred ----CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCccccc-CCCCCEEECCCCCCCCc-
Confidence 3445666667777777777777764 4555666677777777777776 56666654 67777777777777643
Q ss_pred CccccCCCCCCEeeccCCcCccC
Q 047139 577 PSELCKLSALHILDLSHNNLLGP 599 (611)
Q Consensus 577 p~~l~~l~~L~~L~ls~n~l~g~ 599 (611)
| +..+++|+.|++++|++.+.
T Consensus 340 ~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 340 K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp C--CCTTCCCSEEECCSSCEEHH
T ss_pred C--hhhcCCCCEEEeeCCCCCCh
Confidence 2 45566777777777776643
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.1e-30 Score=266.97 Aligned_cols=307 Identities=27% Similarity=0.387 Sum_probs=173.0
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139 150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC 229 (611)
Q Consensus 150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~ 229 (611)
+..+++|++|+++++.+. .+| .+..+++|++|++++|.+ .+ ++. +.++++|++|++++|.++.. ..+..++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i-~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~-- 110 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQI-TD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLT-- 110 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCC-CC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCT--
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcc-cc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCC--
Confidence 456777888888887776 344 367777777777777773 32 333 66667777777766666542 1233333
Q ss_pred CCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCE
Q 047139 230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309 (611)
Q Consensus 230 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 309 (611)
+|++|++++|.+++. +. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++
T Consensus 111 ----~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 111 ----NLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp ----TCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred ----cCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 555555555555422 22 44445555555554433322222 4444444444444444332111 333333333
Q ss_pred EEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEcc
Q 047139 310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN 389 (611)
Q Consensus 310 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 389 (611)
|++++|.+.+. +. +..+++|+.++++
T Consensus 182 L~l~~n~l~~~-----------------------------------------------------~~-~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 182 LSLNYNQIEDI-----------------------------------------------------SP-LASLTSLHYFTAY 207 (347)
T ss_dssp EECTTSCCCCC-----------------------------------------------------GG-GGGCTTCCEEECC
T ss_pred EEccCCccccc-----------------------------------------------------cc-ccCCCccceeecc
Confidence 33333333221 00 2233344444444
Q ss_pred CcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeec
Q 047139 390 SASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSING 469 (611)
Q Consensus 390 ~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~ 469 (611)
+|.+.+..+ ...+++|++|++ ++|.+++
T Consensus 208 ~n~l~~~~~---~~~~~~L~~L~l-------------------------------------------------~~n~l~~ 235 (347)
T 4fmz_A 208 VNQITDITP---VANMTRLNSLKI-------------------------------------------------GNNKITD 235 (347)
T ss_dssp SSCCCCCGG---GGGCTTCCEEEC-------------------------------------------------CSSCCCC
T ss_pred cCCCCCCch---hhcCCcCCEEEc-------------------------------------------------cCCccCC
Confidence 444432222 111233333333 3444332
Q ss_pred ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcc
Q 047139 470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG 549 (611)
Q Consensus 470 ~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 549 (611)
..+ +..+++|++|++++|.++++ +.+..+++|++|++++|++++. +.+..+++|+.|++++|++++
T Consensus 236 ~~~--~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 236 LSP--LANLSQLTWLEIGTNQISDI----------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG
T ss_pred Ccc--hhcCCCCCEEECCCCccCCC----------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC
Confidence 222 56677778888877776532 2345577888888888888753 357788888888888888887
Q ss_pred cChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCc
Q 047139 550 NIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLL 597 (611)
Q Consensus 550 ~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 597 (611)
..|..+.. +++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 302 ~~~~~l~~-l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 302 EDMEVIGG-LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGHHHHHT-CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cChhHhhc-cccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77776665 8888888888888886655 777888888888888875
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.1e-30 Score=266.96 Aligned_cols=308 Identities=24% Similarity=0.337 Sum_probs=226.5
Q ss_pred cccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccc
Q 047139 115 SLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQ 194 (611)
Q Consensus 115 ~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~ 194 (611)
.+..+++|++|+++++.++ .+| .+..+++|++|++++|.+++ +|. +.++++|++|++++|.+ ..
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-----------~~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i-~~- 102 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-----------SIQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKI-TD- 102 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-----------CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CC-
T ss_pred cchhcccccEEEEeCCccc-----------cch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcc-cC-
Confidence 3567888999888888765 344 38889999999999999985 444 99999999999999995 33
Q ss_pred ccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCC
Q 047139 195 LSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP 274 (611)
Q Consensus 195 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 274 (611)
+ ..+.++++|++|++++|.+.+..+ +..++ +|++|++++|.....++ .+..+++|++|++++|.+.+..+
T Consensus 103 ~-~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~------~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 103 I-SALQNLTNLRELYLNEDNISDISP--LANLT------KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp C-GGGTTCTTCSEEECTTSCCCCCGG--GTTCT------TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG
T ss_pred c-hHHcCCCcCCEEECcCCcccCchh--hccCC------ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh
Confidence 3 469999999999999999987544 66666 99999999997764544 48999999999999999885433
Q ss_pred CCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCC
Q 047139 275 PSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWI 354 (611)
Q Consensus 275 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 354 (611)
+..+++|++|++++|.+.+. +. +..+++|+.+++++|.+.+..+ +..+++|++|++++
T Consensus 173 --~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~--------------- 230 (347)
T 4fmz_A 173 --IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGN--------------- 230 (347)
T ss_dssp --GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCS---------------
T ss_pred --hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccC---------------
Confidence 88999999999999999853 33 7888999999999998765322 45555555555555
Q ss_pred CCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceE
Q 047139 355 PPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSV 434 (611)
Q Consensus 355 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l 434 (611)
|++++..+ ...+++|++|++++|.++
T Consensus 231 ------------------------------------n~l~~~~~---~~~l~~L~~L~l~~n~l~--------------- 256 (347)
T 4fmz_A 231 ------------------------------------NKITDLSP---LANLSQLTWLEIGTNQIS--------------- 256 (347)
T ss_dssp ------------------------------------SCCCCCGG---GTTCTTCCEEECCSSCCC---------------
T ss_pred ------------------------------------CccCCCcc---hhcCCCCCEEECCCCccC---------------
Confidence 33332111 111234444444444332
Q ss_pred EccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCC
Q 047139 435 DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIR 514 (611)
Q Consensus 435 ~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~ 514 (611)
+. ..+..+++|++|++++|+++++ +.+..+++|+
T Consensus 257 ----------------------------------~~--~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~ 290 (347)
T 4fmz_A 257 ----------------------------------DI--NAVKDLTKLKMLNVGSNQISDI----------SVLNNLSQLN 290 (347)
T ss_dssp ----------------------------------CC--GGGTTCTTCCEEECCSSCCCCC----------GGGGGCTTCS
T ss_pred ----------------------------------CC--hhHhcCCCcCEEEccCCccCCC----------hhhcCCCCCC
Confidence 11 2345567777777777776633 2345577888
Q ss_pred EEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCc
Q 047139 515 FLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN 573 (611)
Q Consensus 515 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~ 573 (611)
+|++++|++++..|..+..+++|++|++++|++++..| +. .+++|++|++++|+++
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~-~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA-SLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG-GCTTCSEESSSCC---
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh-hhhccceeehhhhccc
Confidence 88888888888888888888888888888888886555 44 3888888888888875
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.1e-31 Score=269.80 Aligned_cols=248 Identities=24% Similarity=0.332 Sum_probs=185.1
Q ss_pred CCCeEEccCCcCcc--CCCccccCCCCCCEEEccC-CCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCE
Q 047139 131 NFKVLDLSNNGFNS--TLPHWLFNITNLLSLDLSS-NDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQT 207 (611)
Q Consensus 131 ~l~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 207 (611)
++++|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|. +.+.+|..++++++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCCE
Confidence 34566666777777 7888888888888888884 88888888888888888888888888 56678888888888888
Q ss_pred EEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCC-CCcEEEccCCcccccCCCCccCcccCceE
Q 047139 208 LKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLK-NLRYLELWYNSFLGSIPPSLGNLTFLEEL 286 (611)
Q Consensus 208 L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 286 (611)
|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+..++ |++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~------~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLP------NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp EECCSSEEESCCCGGGGGCT------TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred EeCCCCccCCcCChHHhcCC------CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 88888888888888888777 888888888888888888888887 888888888888888888887776 8888
Q ss_pred EecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecc
Q 047139 287 YLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRY 366 (611)
Q Consensus 287 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 366 (611)
++++|.+++..|..+..+++|++|++++|.+.+.++. +..+++|+ +|++++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~---------------------------~L~Ls~ 253 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLN---------------------------GLDLRN 253 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCC---------------------------EEECCS
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCC---------------------------EEECcC
Confidence 8888888887888888888888888888877654433 33333333 333333
Q ss_pred cccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcc
Q 047139 367 YQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNH 417 (611)
Q Consensus 367 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~ 417 (611)
|.+.+.+|.++..+++|++|++++|+++|.+|.. ..+++|+.+++++|.
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence 4445556666666666666666666666666654 223455666666554
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.6e-33 Score=296.29 Aligned_cols=386 Identities=19% Similarity=0.125 Sum_probs=183.0
Q ss_pred CCCEEEccCCCCCCCCCcc-CCCCCCCCEEEccCCCCCc---ccccccCCCCCCCCEEEcccccCCCccchhhhc-Cccc
Q 047139 155 NLLSLDLSSNDLQGDIPDG-FSSLNSLQLLDLSGNSFLE---GQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDG-LSEC 229 (611)
Q Consensus 155 ~L~~L~L~~n~~~~~~p~~-l~~l~~L~~L~Ls~n~~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~~ 229 (611)
+|++|++++|+++...... +..+++|++|++++|.+.. ..++..+..+++|++|++++|.++...+..+.. +..
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~- 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT- 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS-
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh-
Confidence 3444444444443221111 3444445555555544211 023344444555555555555544333322221 110
Q ss_pred CCCCCCcEEEccCCCCCc----cCCcccCCCCCCcEEEccCCcccccCCCCcc-----CcccCceEEecCCccccCC---
Q 047139 230 INSSSLARLELGYNQLTG----NLPISLGYLKNLRYLELWYNSFLGSIPPSLG-----NLTFLEELYLTSNQMNGKF--- 297 (611)
Q Consensus 230 ~~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~--- 297 (611)
..++|++|++++|+++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 83 -~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 -PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp -TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred -CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 00135566666655552 3455556666666666666665543222221 2345666666666655422
Q ss_pred -CcCCCCCCCCCEEEccCCccccccChhhhc----CCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCc-
Q 047139 298 -PESFGQLSAIRVLELSDNQWEGFITDAHLR----NLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGP- 371 (611)
Q Consensus 298 -~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~- 371 (611)
+..+..+++|++|++++|.+.+..+..... ..++|++|++++ |.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~---------------------------n~l~~~ 214 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES---------------------------CGVTSD 214 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT---------------------------SCCBTT
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC---------------------------CCCcHH
Confidence 333444566666666666654432221111 233444444444 32332
Q ss_pred ---ccchhccCCCCCCEEEccCcccccccchhHHh----cCCCCCEEEccCcccccc----cCccccc-CCCceEEccCC
Q 047139 372 ---KFPTWLRNQTELTTLVLNSASISDTLPSWFLQ----LNLTLDELDVGGNHLSGR----IPNTLVF-RFPGSVDLSSN 439 (611)
Q Consensus 372 ---~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~----~~~~L~~L~ls~n~l~~~----~~~~~~~-~~l~~l~ls~n 439 (611)
.++..+..+++|++|++++|.+++.....+.. ..++|++|++++|++++. ++..+.. ..++.|++
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L--- 291 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL--- 291 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC---
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC---
Confidence 23455555666666666666665433222221 235566666666655532 2222211 12333333
Q ss_pred cccccCCCCCCCcceeecCcccCCCCeeecccccchhc-----cCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCC
Q 047139 440 RFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGN-----LKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIR 514 (611)
Q Consensus 440 ~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~ 514 (611)
++|.+.+..+..+.. .++|++|++++|.+++... ..+|..+..+++|+
T Consensus 292 -----------------------s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~ 344 (461)
T 1z7x_W 292 -----------------------AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC----SHFSSVLAQNRFLL 344 (461)
T ss_dssp -----------------------TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH----HHHHHHHHHCSSCC
T ss_pred -----------------------CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH----HHHHHHHhhCCCcc
Confidence 444443332222222 2466666666665542110 12344555566677
Q ss_pred EEECcCCcccccCcccccC-----CCCCCEEECCCCcCcc----cChhHHhhcCCCCcEEECcCCcCcccCCcccc----
Q 047139 515 FLVLSNNHLSGEIPPSLKN-----CSLMDSLDLGENQLSG----NIPAWIGESMPSLSILRLRSNHFNGTIPSELC---- 581 (611)
Q Consensus 515 ~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~---- 581 (611)
+|++++|.+++..+..+.. .++|++|++++|++++ .+|..+.. +++|++|++++|++++.-...+.
T Consensus 345 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAGILQLVESVR 423 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCCHHHHHHHHHHhc
Confidence 7777777666544433332 5567777777777665 55665554 67777777777776643111111
Q ss_pred -CCCCCCEeeccCCcCccCC
Q 047139 582 -KLSALHILDLSHNNLLGPI 600 (611)
Q Consensus 582 -~l~~L~~L~ls~n~l~g~i 600 (611)
....|+.|++.++......
T Consensus 424 ~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 424 QPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp STTCCCCEEECTTCCCCHHH
T ss_pred cCCcchhheeecccccCHHH
Confidence 1234555555555554433
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.8e-34 Score=302.26 Aligned_cols=364 Identities=20% Similarity=0.192 Sum_probs=211.0
Q ss_pred CCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCc----cchhhhcCcccCCCCCCcEEEccCCCCCccCCccc
Q 047139 178 NSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGE----VSDFIDGLSECINSSSLARLELGYNQLTGNLPISL 253 (611)
Q Consensus 178 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l 253 (611)
++|++|++++|++........+..+++|++|++++|.++.. ++..+..++ +|++|++++|.+++..+..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~------~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP------ALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCT------TCCEEECTTCCCHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCC------CcCEEeCCCCcCChHHHHHH
Confidence 45677777777742222233355667777777777776643 233444444 66666666666654333222
Q ss_pred C-CCC----CCcEEEccCCcccc----cCCCCccCcccCceEEecCCccccCCCcC-----CCCCCCCCEEEccCCcccc
Q 047139 254 G-YLK----NLRYLELWYNSFLG----SIPPSLGNLTFLEELYLTSNQMNGKFPES-----FGQLSAIRVLELSDNQWEG 319 (611)
Q Consensus 254 ~-~l~----~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~-----l~~l~~L~~L~L~~n~l~~ 319 (611)
. .++ +|++|++++|.++. .+|..+..+++|++|++++|.+++..+.. ....++|++|++++|.+++
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 1 222 46666666665552 23444555555555555555554322211 1123345555555555443
Q ss_pred ccC---hhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhcc-----CCCCCCEEEccCc
Q 047139 320 FIT---DAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLR-----NQTELTTLVLNSA 391 (611)
Q Consensus 320 ~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-----~~~~L~~L~l~~n 391 (611)
... ...+..+++|++|++++ |.+.+..+..+. ..++|++|++++|
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~---------------------------n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSN---------------------------NDINEAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCS---------------------------SBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred HHHHHHHHHHhhCCCCCEEECcC---------------------------CCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence 211 01233334444444443 222221111111 2345666666666
Q ss_pred ccccc----cchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCee
Q 047139 392 SISDT----LPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSI 467 (611)
Q Consensus 392 ~l~~~----~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l 467 (611)
.+++. ++..+.. +++|++|++++|++.+.....+. +....... .+++|++++|.+
T Consensus 210 ~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~------------------~~~~~~~~--~L~~L~L~~n~l 268 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVAS-KASLRELALGSNKLGDVGMAELC------------------PGLLHPSS--RLRTLWIWECGI 268 (461)
T ss_dssp CCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHHHHHHHHH------------------HHHTSTTC--CCCEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHh-CCCccEEeccCCcCChHHHHHHH------------------HHHhcCCC--CceEEECcCCCC
Confidence 55543 2333332 34555555555555432111110 00011112 225555588888
Q ss_pred ecc----cccchhccCCCCeEECcCCCCCCCCCCcccccCccccc-CcCCCCEEECcCCccccc----CcccccCCCCCC
Q 047139 468 NGS----IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG-SLLTIRFLVLSNNHLSGE----IPPSLKNCSLMD 538 (611)
Q Consensus 468 ~~~----~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~-~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~ 538 (611)
++. ++..+..+++|++|++++|.+++.....+. ..+. ..++|++|++++|.+++. ++..+..+++|+
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~----~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 344 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC----ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH----HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH----HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc
Confidence 764 677788899999999999977532211111 1111 236999999999999875 567788899999
Q ss_pred EEECCCCcCcccChhHHhhc----CCCCcEEECcCCcCcc----cCCccccCCCCCCEeeccCCcCccC
Q 047139 539 SLDLGENQLSGNIPAWIGES----MPSLSILRLRSNHFNG----TIPSELCKLSALHILDLSHNNLLGP 599 (611)
Q Consensus 539 ~L~Ls~N~l~~~ip~~l~~~----l~~L~~L~ls~n~l~~----~~p~~l~~l~~L~~L~ls~n~l~g~ 599 (611)
+|++++|++++..+..+... .++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 345 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 99999999997767666542 5699999999999997 7898999999999999999999865
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=4.7e-33 Score=305.87 Aligned_cols=432 Identities=14% Similarity=0.031 Sum_probs=282.2
Q ss_pred CccccCCCCCCEEECCCCCCCeEEccCCcCccCCCcc------------ccCCCCCCEEEccCCCCCCCCCccCCCC-C-
Q 047139 113 SPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHW------------LFNITNLLSLDLSSNDLQGDIPDGFSSL-N- 178 (611)
Q Consensus 113 ~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~------------l~~l~~L~~L~L~~n~~~~~~p~~l~~l-~- 178 (611)
+..+..+++|++|+++++... . . .+.+|.. ...+++|++|++++|.+++..+..+... +
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~----~--~-~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 138 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRA----A--M-FNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARAD 138 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGG----G--G-GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGG
T ss_pred HHHHHhCCCCeEEEecCCcch----h--h-cccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccc
Confidence 345667888999998775321 0 0 0122222 2278999999999998876666666653 3
Q ss_pred CCCEEEccCCCCCc-ccccccCCCCCCCCEEEcccccCCCccc----hhhhcCcccCCCCCCcEEEccCCCCC----ccC
Q 047139 179 SLQLLDLSGNSFLE-GQLSRNLGTLCNLQTLKLSLNQFSGEVS----DFIDGLSECINSSSLARLELGYNQLT----GNL 249 (611)
Q Consensus 179 ~L~~L~Ls~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~~~~~~~L~~L~Ls~n~l~----~~~ 249 (611)
+|++|++++|.... ..++....++++|++|++++|.+++... .....++ +|++|++++|.++ +.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~------~L~~L~L~~n~~~~~~~~~l 212 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT------SLEVLNFYMTEFAKISPKDL 212 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC------CCCEEECTTCCCSSCCHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC------CccEEEeeccCCCccCHHHH
Confidence 49999999886211 2233334578999999999998876633 3444455 8999999999987 344
Q ss_pred CcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccc---cCCCcCCCCCCCCCEEEccCCccccccChhhh
Q 047139 250 PISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN---GKFPESFGQLSAIRVLELSDNQWEGFITDAHL 326 (611)
Q Consensus 250 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l 326 (611)
+..+..+++|++|++++|.+.+ +|..+..+++|++|+++..... +..+..+..+++|+.++++++.. +.++. .+
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~-~~ 289 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPI-LF 289 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGG-GG
T ss_pred HHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHH-HH
Confidence 5556678999999999998875 6677888899999999864332 23445677888999999887533 33444 67
Q ss_pred cCCCCCCEEEcCccCCCCceeecc-CCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccC-----------cccc
Q 047139 327 RNLTSLEELSLIKTSNSSLSFNIS-FDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNS-----------ASIS 394 (611)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~-----------n~l~ 394 (611)
..+++|++|++++|. +..... .....+++|+.|++.++...+.++.....+++|++|++++ +.++
T Consensus 290 ~~~~~L~~L~Ls~~~---l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL---LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGCCEEEETTCC---CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred hhcCCCcEEecCCCc---CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 778888888888854 222111 1134456777777774433334455556677777777773 4555
Q ss_pred cccchhHHhcCCCCCEEEccCcccccccCccccc--CCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecc--
Q 047139 395 DTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVF--RFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGS-- 470 (611)
Q Consensus 395 ~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~--~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~-- 470 (611)
+.....+...+++|++|+++.|++++..+..+.. ..++.++++++ + ..|.+++.
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~---------------------~-~~n~l~~~p~ 424 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL---------------------D-REERITDLPL 424 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC---------------------S-CCSCCSSCCC
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec---------------------C-CCccccCchH
Confidence 5444444444577777777777776554444332 13444444311 1 24444432
Q ss_pred ---cccchhccCCCCeEECcCCCCCCCCCCcccccCccccc-CcCCCCEEECcCCcccc-cCcccccCCCCCCEEECCCC
Q 047139 471 ---IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG-SLLTIRFLVLSNNHLSG-EIPPSLKNCSLMDSLDLGEN 545 (611)
Q Consensus 471 ---~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~-~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N 545 (611)
++..+..+++|++|++++|. +.+++..+..+. .+++|++|++++|++++ .++..+..+++|++|++++|
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~------~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQ------GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCG------GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred HHHHHHHHHhCCCCCEEEEecCC------CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 44446778899999997653 122333333333 37889999999999886 34556678899999999999
Q ss_pred cCcccChhHHhhcCCCCcEEECcCCcCcccCCcccc-CCCCCCEeec
Q 047139 546 QLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELC-KLSALHILDL 591 (611)
Q Consensus 546 ~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~-~l~~L~~L~l 591 (611)
.+++..+..+...+++|++|++++|++++.-...+. .++.+.+..+
T Consensus 499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEE
T ss_pred CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEe
Confidence 988765555555589999999999998865443333 4555544433
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.5e-29 Score=252.18 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=38.5
Q ss_pred ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccc--ccCcccccCCCCCCEEECCCCc
Q 047139 470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLS--GEIPPSLKNCSLMDSLDLGENQ 546 (611)
Q Consensus 470 ~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~N~ 546 (611)
.+|..+..+++|++|++++|+++.+..+.|.+..+. ....+|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~--~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG--VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC--SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccc--cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 344445555666666666666655554444432211 11345666666666655 4455556666666666666653
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.5e-28 Score=247.63 Aligned_cols=149 Identities=24% Similarity=0.296 Sum_probs=75.6
Q ss_pred CCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCC
Q 047139 155 NLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSS 234 (611)
Q Consensus 155 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~ 234 (611)
+++.++++++.++ .+|..+. +++++|++++|. +++..+..++++++|++|++++|.+++..|..+..++ +
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~ 101 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV------K 101 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT------T
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC------C
Confidence 5677777777666 4555443 466666666666 3444444566666666666666666555555555444 5
Q ss_pred CcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCcccc--CCCcCCCCCCCCCEEEc
Q 047139 235 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG--KFPESFGQLSAIRVLEL 312 (611)
Q Consensus 235 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L 312 (611)
|++|++++|+++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+.++++|++|++
T Consensus 102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 555555555554 3333332 344555555544443333334444444444444444421 23333333444444444
Q ss_pred cCCc
Q 047139 313 SDNQ 316 (611)
Q Consensus 313 ~~n~ 316 (611)
++|.
T Consensus 179 ~~n~ 182 (330)
T 1xku_A 179 ADTN 182 (330)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 4433
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.1e-28 Score=250.55 Aligned_cols=289 Identities=18% Similarity=0.208 Sum_probs=184.5
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 313 (611)
+++.++++++.++ .+|..+. +++++|++++|.+++..|..+.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4566666666555 4444432 455666666666555445555556666666666665555555555555556666665
Q ss_pred CCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccc
Q 047139 314 DNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASI 393 (611)
Q Consensus 314 ~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l 393 (611)
+|.+.. +|. ... .+|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 111 ~n~l~~-l~~----------------------------~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 111 KNHLVE-IPP----------------------------NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp SSCCCS-CCS----------------------------SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCcCCc-cCc----------------------------ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 555542 222 111 3455555555555555555566677777777777766
Q ss_pred cc--ccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccc
Q 047139 394 SD--TLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSI 471 (611)
Q Consensus 394 ~~--~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~ 471 (611)
+. ..|..+... +|++|++++| ++++ +|..+. . .+++|++++|.+++..
T Consensus 160 ~~~~~~~~~~~~l--~L~~L~l~~n-----------------------~l~~-l~~~~~--~--~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 160 ENSGFEPGAFDGL--KLNYLRISEA-----------------------KLTG-IPKDLP--E--TLNELHLDHNKIQAIE 209 (332)
T ss_dssp BGGGSCTTSSCSC--CCSCCBCCSS-----------------------BCSS-CCSSSC--S--SCSCCBCCSSCCCCCC
T ss_pred ccCCCCcccccCC--ccCEEECcCC-----------------------CCCc-cCcccc--C--CCCEEECCCCcCCccC
Confidence 42 233322221 4444444444 4443 222221 1 2356666999998888
Q ss_pred ccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccC
Q 047139 472 PQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNI 551 (611)
Q Consensus 472 ~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 551 (611)
+..+..+++|++|++++|+++.+. |..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIE--------NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCC--------TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred HHHhcCCCCCCEEECCCCcCCcCC--------hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence 888999999999999988776433 345666889999999999998 78888999999999999999998544
Q ss_pred hhHHhhc-----CCCCcEEECcCCcCc--ccCCccccCCCCCCEeeccCCc
Q 047139 552 PAWIGES-----MPSLSILRLRSNHFN--GTIPSELCKLSALHILDLSHNN 595 (611)
Q Consensus 552 p~~l~~~-----l~~L~~L~ls~n~l~--~~~p~~l~~l~~L~~L~ls~n~ 595 (611)
+..+... .++|+.|++++|++. +..|..+..++.|+.+++++|+
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4333221 367899999999987 6677888899999999999985
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=8.7e-28 Score=243.71 Aligned_cols=263 Identities=25% Similarity=0.274 Sum_probs=178.9
Q ss_pred EccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccC
Q 047139 136 DLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF 215 (611)
Q Consensus 136 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 215 (611)
++++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++++|++ + .+|..+. ++|++|++++|.+
T Consensus 58 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~-~l~~~~~--~~L~~L~l~~n~l 133 (330)
T 1xku_A 58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-K-ELPEKMP--KTLQELRVHENEI 133 (330)
T ss_dssp ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-S-BCCSSCC--TTCCEEECCSSCC
T ss_pred ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-C-ccChhhc--ccccEEECCCCcc
Confidence 3333444555566788888888888888888877788888888888888888884 3 4665554 6888888888888
Q ss_pred CCccchhhhcCcccCCCCCCcEEEccCCCCCc--cCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCcc
Q 047139 216 SGEVSDFIDGLSECINSSSLARLELGYNQLTG--NLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQM 293 (611)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 293 (611)
++..+..+..++ +|++|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+
T Consensus 134 ~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 134 TKVRKSVFNGLN------QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CBBCHHHHTTCT------TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCC
T ss_pred cccCHhHhcCCc------cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcC
Confidence 887777777777 88888888888853 66777788888888888888877 4565544 7788888888888
Q ss_pred ccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCccc
Q 047139 294 NGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKF 373 (611)
Q Consensus 294 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 373 (611)
++..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.. . .+
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l---------------------------~-~l 255 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKL---------------------------V-KV 255 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCC---------------------------S-SC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcC---------------------------c-cC
Confidence 877777788888888888888888775443 577777777777777433 2 34
Q ss_pred chhccCCCCCCEEEccCcccccccchhHHhc-----CCCCCEEEccCccccc--ccCcccccC-CCceEEccCCc
Q 047139 374 PTWLRNQTELTTLVLNSASISDTLPSWFLQL-----NLTLDELDVGGNHLSG--RIPNTLVFR-FPGSVDLSSNR 440 (611)
Q Consensus 374 ~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~-----~~~L~~L~ls~n~l~~--~~~~~~~~~-~l~~l~ls~n~ 440 (611)
|.++..+++|++|++++|++++..+..+... .+.++.+++++|.+.. ..|..+... .++.+++++|+
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 4445555555566666555554333332211 2456666666666542 222222222 56666666653
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.8e-31 Score=289.90 Aligned_cols=425 Identities=15% Similarity=0.101 Sum_probs=239.9
Q ss_pred CCCccccCCCCCCEEEccCCCCC---CCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccch
Q 047139 145 TLPHWLFNITNLLSLDLSSNDLQ---GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSD 221 (611)
Q Consensus 145 ~~p~~l~~l~~L~~L~L~~n~~~---~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 221 (611)
..+..+..+++|++|+++++... +.+|..++.. ....++....++++|++|++++|.+++..+.
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~-------------~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~ 130 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGY-------------VTPWVTEISNNLRQLKSVHFRRMIVSDLDLD 130 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCB-------------CHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhccccccccccc-------------chHHHHHHHhhCCCCCeEEeeccEecHHHHH
Confidence 34455677888888888776421 2333333210 0000111112344555555555544444333
Q ss_pred hhhcC-cccCCCCCCcEEEccCCC-CCc-cCCcccCCCCCCcEEEccCCcccccC----CCCccCcccCceEEecCCccc
Q 047139 222 FIDGL-SECINSSSLARLELGYNQ-LTG-NLPISLGYLKNLRYLELWYNSFLGSI----PPSLGNLTFLEELYLTSNQMN 294 (611)
Q Consensus 222 ~l~~l-~~~~~~~~L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~ 294 (611)
.+... + ++|++|++++|. ++. .++.....+++|++|++++|.+++.. +..+..+++|++|++++|.++
T Consensus 131 ~l~~~~~-----~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~ 205 (592)
T 3ogk_B 131 RLAKARA-----DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA 205 (592)
T ss_dssp HHHHHHG-----GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS
T ss_pred HHHHhcc-----ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC
Confidence 33331 1 025555555544 110 11112224555555555555554331 112234455666666655554
Q ss_pred ----cCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccC
Q 047139 295 ----GKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLG 370 (611)
Q Consensus 295 ----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 370 (611)
+.++..+.++++|++|++++|.+.+ ++. .+..+++|++|+++.................+.+|+.++++++ ..
T Consensus 206 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~ 282 (592)
T 3ogk_B 206 KISPKDLETIARNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GP 282 (592)
T ss_dssp SCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CT
T ss_pred ccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-ch
Confidence 1223333455666666666665554 232 4556666666666542111111222233444556666666654 23
Q ss_pred cccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCccccc-ccCcccc-cCCCceEEccC----------
Q 047139 371 PKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSG-RIPNTLV-FRFPGSVDLSS---------- 438 (611)
Q Consensus 371 ~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~-~~~l~~l~ls~---------- 438 (611)
..+|..+..+++|++|++++|.+++.....+...+++|++|+++ +.+.. .++.... ...++.|++++
T Consensus 283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 45666666677777777777776655444444455677777777 33332 2222222 22577777772
Q ss_pred -CcccccCC----CCCCCcceeecCcccCCCCeeecccccchhc-cCCCCeEECcC----CCCCCCCCCcccccCccccc
Q 047139 439 -NRFEGPIP----LWSSNLTKLYLRDLDISFNSINGSIPQSVGN-LKQLLTLVISN----NNLSDMTNNNFSGEIPESIG 508 (611)
Q Consensus 439 -n~~~~~~p----~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~~----n~i~~l~~n~~~g~ip~~~~ 508 (611)
|.+++... ....+++.| +++.|.+++..+..+.. +++|+.|++++ |.+++... ...++..+.
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L-----~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~---~~~~~~~~~ 433 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYM-----AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL---DNGVRSLLI 433 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEE-----EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC---HHHHHHHHH
T ss_pred cCccCHHHHHHHHhhCccCeEE-----EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH---HHHHHHHHH
Confidence 34442211 113344444 44888888877777776 99999999974 34432210 112444566
Q ss_pred CcCCCCEEECcCCc--ccccCccccc-CCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCccc-CCccccCCC
Q 047139 509 SLLTIRFLVLSNNH--LSGEIPPSLK-NCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT-IPSELCKLS 584 (611)
Q Consensus 509 ~l~~L~~L~Ls~n~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~ 584 (611)
.+++|++|++++|. +++..+..+. .+++|++|++++|++++.....+...+++|++|++++|++++. ++.....++
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence 79999999998654 7766555554 4899999999999998755555555699999999999999865 444456789
Q ss_pred CCCEeeccCCcCccC
Q 047139 585 ALHILDLSHNNLLGP 599 (611)
Q Consensus 585 ~L~~L~ls~n~l~g~ 599 (611)
+|++|++++|+++..
T Consensus 514 ~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 514 SLRYLWVQGYRASMT 528 (592)
T ss_dssp SCCEEEEESCBCCTT
T ss_pred ccCeeECcCCcCCHH
Confidence 999999999998865
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=6.5e-28 Score=247.03 Aligned_cols=283 Identities=21% Similarity=0.196 Sum_probs=204.1
Q ss_pred CCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccccc
Q 047139 119 LKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRN 198 (611)
Q Consensus 119 l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 198 (611)
++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|+ +.+..+..
T Consensus 30 C~~~~~c~~~~~~l~-----------~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 95 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-----------SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDS 95 (353)
T ss_dssp ECTTSEEECCSTTCS-----------SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT
T ss_pred CCCCeEeeCCCCCcc-----------ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhh
Confidence 333444555555554 4565544 588899999988887666688888999999999888 56666777
Q ss_pred CCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCC-cccCCCCCCcEEEccCC-cccccCCCC
Q 047139 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP-ISLGYLKNLRYLELWYN-SFLGSIPPS 276 (611)
Q Consensus 199 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n-~l~~~~p~~ 276 (611)
++++++|++|++++|.+++..+..+..++ +|++|++++|++++..+ ..+..+++|++|++++| .+.+..|..
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 169 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLS------SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCT------TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCc------cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH
Confidence 88888999999999988877766677777 89999999998884333 37888899999999988 466556677
Q ss_pred ccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCC
Q 047139 277 LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPP 356 (611)
Q Consensus 277 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 356 (611)
+.++++|++|++++|.+++..|..+..+++|++|++++|.+.. ++...+..+++|++|++++|................
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CC
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCcccccccccccccccc
Confidence 8888999999999999888888888889999999999998854 455466678888888888865533222111112234
Q ss_pred cceeEEEecccccCc----ccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccC
Q 047139 357 FKLRYLVIRYYQLGP----KFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIP 423 (611)
Q Consensus 357 ~~L~~L~l~~~~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~ 423 (611)
..++.++++++.+.+ .+|.++..+++|++|++++|+++ .+|..++..+++|++|++++|.+.+..|
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 456666676666654 45666777777777777777776 5565544445677777777777665544
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.3e-28 Score=243.22 Aligned_cols=261 Identities=24% Similarity=0.206 Sum_probs=191.8
Q ss_pred CCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCC--CCCccCCCCCCCCEEEccCCCCCcccccc
Q 047139 120 KDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQG--DIPDGFSSLNSLQLLDLSGNSFLEGQLSR 197 (611)
Q Consensus 120 ~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~--~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~ 197 (611)
++|++|++++|++ ++..+..+.++++|++|++++|.++. ..|..+..+++|++|++++|.+ . .+|.
T Consensus 28 ~~l~~L~L~~n~l----------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~-~l~~ 95 (306)
T 2z66_A 28 SSATRLELESNKL----------QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-I-TMSS 95 (306)
T ss_dssp TTCCEEECCSSCC----------CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-E-EEEE
T ss_pred CCCCEEECCCCcc----------CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-c-cChh
Confidence 4667666666655 33333457899999999999998873 2366677889999999999984 3 4777
Q ss_pred cCCCCCCCCEEEcccccCCCccc-hhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccc-cCCC
Q 047139 198 NLGTLCNLQTLKLSLNQFSGEVS-DFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLG-SIPP 275 (611)
Q Consensus 198 ~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~ 275 (611)
.+.++++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|.
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR------NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCT------TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhcc------CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 78899999999999998887655 5566666 89999999999988888888889999999999998886 5788
Q ss_pred CccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCC
Q 047139 276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIP 355 (611)
Q Consensus 276 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 355 (611)
.+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~---------------- 232 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSL---------------- 232 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG-GGTTCTTCCEEECTT----------------
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh-hccCcccCCEeECCC----------------
Confidence 888889999999999998887788888888999999999988764443 566666666666665
Q ss_pred CcceeEEEecccccCcccchhccCC-CCCCEEEccCcccccccc-hhHHhcCCCCCEEEccCcccccccCccc
Q 047139 356 PFKLRYLVIRYYQLGPKFPTWLRNQ-TELTTLVLNSASISDTLP-SWFLQLNLTLDELDVGGNHLSGRIPNTL 426 (611)
Q Consensus 356 ~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~p-~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 426 (611)
|.+.+..|..+..+ ++|++|++++|.+++..+ .++..+....+.+.+..+.+....|..+
T Consensus 233 -----------N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 233 -----------NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp -----------SCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred -----------CCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 33455556666666 378888888888876543 2333332333344444555555555443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=241.43 Aligned_cols=286 Identities=20% Similarity=0.264 Sum_probs=172.3
Q ss_pred CCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCC
Q 047139 152 NITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECIN 231 (611)
Q Consensus 152 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~ 231 (611)
.++.....+.+++.++ .+|..+. ++|++|++++|. +++..+..+.++++|++|++++|.+++..+..+..++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---- 100 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG---- 100 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT----
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC----
Confidence 3455566788888877 5666554 478888888887 4444444677777777777777777766666666665
Q ss_pred CCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC--CccCcccCceEEecCC-ccccCCCcCCCCCCCCC
Q 047139 232 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP--SLGNLTFLEELYLTSN-QMNGKFPESFGQLSAIR 308 (611)
Q Consensus 232 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~ 308 (611)
+|++|++++|++++..+..+.++++|++|++++|++++ +|. .+.++++|++|++++| .+.+..+..+.++++|+
T Consensus 101 --~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 101 --SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp --TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred --CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 77777777777764444446666777777777776663 333 4566666666666666 34444444555555566
Q ss_pred EEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEc
Q 047139 309 VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVL 388 (611)
Q Consensus 309 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 388 (611)
+|++++|.+.+. .|..+..+++|++|++
T Consensus 178 ~L~l~~n~l~~~----------------------------------------------------~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 178 ELEIDASDLQSY----------------------------------------------------EPKSLKSIQNVSHLIL 205 (353)
T ss_dssp EEEEEETTCCEE----------------------------------------------------CTTTTTTCSEEEEEEE
T ss_pred EEECCCCCcCcc----------------------------------------------------CHHHHhccccCCeecC
Confidence 666555555443 3334444555566666
Q ss_pred cCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeee
Q 047139 389 NSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSIN 468 (611)
Q Consensus 389 ~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~ 468 (611)
++|.+. .+|..+....++|+.|++++|++++..+..+..
T Consensus 206 ~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------------------------- 244 (353)
T 2z80_A 206 HMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------------------------------- 244 (353)
T ss_dssp ECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------------------------
T ss_pred CCCccc-cchhhhhhhcccccEEECCCCcccccccccccc----------------------------------------
Confidence 666653 455555555577788888777776432221110
Q ss_pred cccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCccc-ccCCCCCCEEECCCCcC
Q 047139 469 GSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPS-LKNCSLMDSLDLGENQL 547 (611)
Q Consensus 469 ~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l 547 (611)
....+.++.++++++.++ ++.+. .+|+.+..+++|++|++++|+++ .+|.. +..+++|++|++++|.+
T Consensus 245 ------~~~~~~l~~l~L~~~~l~---~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 245 ------GETNSLIKKFTFRNVKIT---DESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp --------CCCCCCEEEEESCBCC---HHHHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ------ccccchhhcccccccccc---Ccchh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence 011223444444444322 22222 35556666777777777777777 44544 57778888888888888
Q ss_pred cccCh
Q 047139 548 SGNIP 552 (611)
Q Consensus 548 ~~~ip 552 (611)
++..|
T Consensus 314 ~~~~~ 318 (353)
T 2z80_A 314 DCSCP 318 (353)
T ss_dssp CCCHH
T ss_pred cCcCC
Confidence 76655
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6e-27 Score=236.71 Aligned_cols=231 Identities=21% Similarity=0.309 Sum_probs=170.1
Q ss_pred CCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccccc
Q 047139 119 LKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRN 198 (611)
Q Consensus 119 l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 198 (611)
.+++++|++++|.+ + .+|..+.++++|++|++++|.++ .+|..++++++|++|++++|.+ . .+|..
T Consensus 80 ~~~l~~L~L~~n~l----------~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-~-~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRSVPL----------P-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-R-ALPAS 145 (328)
T ss_dssp STTCCEEEEESSCC----------S-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-C-CCCGG
T ss_pred ccceeEEEccCCCc----------h-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-c-cCcHH
Confidence 45666666665554 4 67888999999999999999999 8899999999999999999994 4 78989
Q ss_pred CCCCCCCCEEEcccccCCCccchhhhcCc---ccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLS---ECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP 275 (611)
Q Consensus 199 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 275 (611)
++++++|++|++++|++.+.+|..+.... .+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|.
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~ 223 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGP 223 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCG
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cch
Confidence 99999999999999998888887765400 0011227788888888777 677777777778888888777773 555
Q ss_pred CccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCC
Q 047139 276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIP 355 (611)
Q Consensus 276 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 355 (611)
.+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|. .+.++++|++|++++
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~---------------- 286 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRG---------------- 286 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTT----------------
T ss_pred hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCC----------------
Confidence 677777777788877777777777777777777777777777666665 355555555554444
Q ss_pred CcceeEEEecccccCcccchhccCCCCCCEEEccCccc
Q 047139 356 PFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASI 393 (611)
Q Consensus 356 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l 393 (611)
|.+.+.+|.++..+++|+.+++..+.+
T Consensus 287 -----------n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 287 -----------CVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp -----------CTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred -----------CCchhhccHHHhhccCceEEeCCHHHH
Confidence 334556666666666666666665544
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.4e-26 Score=225.46 Aligned_cols=217 Identities=23% Similarity=0.192 Sum_probs=149.9
Q ss_pred CCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEccccc-CCCccchhh
Q 047139 145 TLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQ-FSGEVSDFI 223 (611)
Q Consensus 145 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l 223 (611)
.+|..+ .++|++|++++|.+++..+..|.++++|++|++++|. +.+..|..+.++++|++|++++|. +....+..+
T Consensus 25 ~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 345433 4688888888888887766778888888888888887 555567778888888888888886 666666667
Q ss_pred hcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCC
Q 047139 224 DGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQ 303 (611)
Q Consensus 224 ~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 303 (611)
..++ +|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..
T Consensus 102 ~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 175 (285)
T 1ozn_A 102 HGLG------RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175 (285)
T ss_dssp TTCT------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cCCc------CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence 6666 7777777777777666777777777777777777777555556777777777777777777555555777
Q ss_pred CCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCC
Q 047139 304 LSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTEL 383 (611)
Q Consensus 304 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 383 (611)
+++|++|++++|.+.+..+. .+..+++|+.|++++ |.+.+..+..+..+++|
T Consensus 176 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~---------------------------n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFA---------------------------NNLSALPTEALAPLRAL 227 (285)
T ss_dssp CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCS---------------------------SCCSCCCHHHHTTCTTC
T ss_pred ccccCEEECCCCcccccCHh-HccCcccccEeeCCC---------------------------CcCCcCCHHHcccCccc
Confidence 77777777777776664443 455555555544444 33344444556666777
Q ss_pred CEEEccCcccccccc
Q 047139 384 TTLVLNSASISDTLP 398 (611)
Q Consensus 384 ~~L~l~~n~l~~~~p 398 (611)
++|++++|.+....+
T Consensus 228 ~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 228 QYLRLNDNPWVCDCR 242 (285)
T ss_dssp CEEECCSSCEECSGG
T ss_pred CEEeccCCCccCCCC
Confidence 777777776664433
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=5.3e-30 Score=281.68 Aligned_cols=438 Identities=15% Similarity=0.094 Sum_probs=237.4
Q ss_pred cccCCCCCCEEECCCCCC-CeEEccCCcCccC----CCccccCCCCCCEEEccCCCCCCCCCccCC-CCCCCCEEEccCC
Q 047139 115 SLLQLKDLEYLDLSLNNF-KVLDLSNNGFNST----LPHWLFNITNLLSLDLSSNDLQGDIPDGFS-SLNSLQLLDLSGN 188 (611)
Q Consensus 115 ~l~~l~~L~~L~ls~n~l-~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~-~l~~L~~L~Ls~n 188 (611)
.+..+++|++|+++++.. ..+.+....+.+. ++.....+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 356678888888877641 1111110000010 112234677888888888887766555554 5788888888887
Q ss_pred CCCcc-cccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCC--CCcc-CCcccCCCCCCcEEEc
Q 047139 189 SFLEG-QLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQ--LTGN-LPISLGYLKNLRYLEL 264 (611)
Q Consensus 189 ~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~L 264 (611)
..++. .++..+.++++|++|++++|.+++..+..+..+. ..+++|++|++++|. ++.. ++..+..+++|++|++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP--DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC--TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh--hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 32332 2444445778888888888887766665555433 234478888888876 2211 1222234688888888
Q ss_pred cCCcccccCCCCccCcccCceEEecCCc-------cccCCCcCCCCCCCCCEE-EccCCccccccChhhhcCCCCCCEEE
Q 047139 265 WYNSFLGSIPPSLGNLTFLEELYLTSNQ-------MNGKFPESFGQLSAIRVL-ELSDNQWEGFITDAHLRNLTSLEELS 336 (611)
Q Consensus 265 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~~l~~l~~L~~L~ 336 (611)
++|...+.+|..+..+++|++|+++.+. +.+ ++..+.++++|+.+ .+.+... +.++. .+..+++|++|+
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~-~~~~~~~L~~L~ 295 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPA-VYSVCSRLTTLN 295 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGG-GHHHHTTCCEEE
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHH-HHHhhCCCCEEE
Confidence 8873333366667777888888755442 222 33356677777777 3333222 22222 344667788888
Q ss_pred cCccCCCCceeec-cCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEcc---------CcccccccchhHHhcCC
Q 047139 337 LIKTSNSSLSFNI-SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLN---------SASISDTLPSWFLQLNL 406 (611)
Q Consensus 337 l~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~---------~n~l~~~~p~~~~~~~~ 406 (611)
+++|.. .... ......+++|+.|++.+|.....++.....+++|++|+++ .+.+++.....+...++
T Consensus 296 L~~~~l---~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~ 372 (594)
T 2p1m_B 296 LSYATV---QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372 (594)
T ss_dssp CTTCCC---CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT
T ss_pred ccCCCC---CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch
Confidence 777432 2111 1112345678888887772222333344457888888873 34555555555555567
Q ss_pred CCCEEEccCcccccccCcccc--cCCCceEEcc--C----CcccccC-----CCCCCCcceeecCcccCCCCeeeccccc
Q 047139 407 TLDELDVGGNHLSGRIPNTLV--FRFPGSVDLS--S----NRFEGPI-----PLWSSNLTKLYLRDLDISFNSINGSIPQ 473 (611)
Q Consensus 407 ~L~~L~ls~n~l~~~~~~~~~--~~~l~~l~ls--~----n~~~~~~-----p~~~~~l~~L~l~~L~Ls~n~l~~~~~~ 473 (611)
+|++|.++.|.+++.....+. ...++.++++ + +.+++.. +..+..+. .|++|++++ .+++..+.
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~--~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK--DLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT--TCCEEECCS-SCCHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC--CccEEeecC-cccHHHHH
Confidence 888888888877765544443 2367777776 2 2232110 00011111 113333344 44444444
Q ss_pred chhc-cCCCCeEECcCCCCCCCCCCcccccCcccc-cCcCCCCEEECcCCcccccCcc-cccCCCCCCEEECCCCcCccc
Q 047139 474 SVGN-LKQLLTLVISNNNLSDMTNNNFSGEIPESI-GSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDLGENQLSGN 550 (611)
Q Consensus 474 ~l~~-l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~-~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ 550 (611)
.+.. +++|++|++++|.+++ ..+..+ ..+++|++|++++|.+++..+. ....+++|+.|++++|+++..
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~--------~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSD--------LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSH--------HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred HHHHhchhccEeeccCCCCcH--------HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence 4443 5566666666555431 111111 3355666666666665433322 233455666666666665544
Q ss_pred ChhHHhhcCCCCcEEECcCCc
Q 047139 551 IPAWIGESMPSLSILRLRSNH 571 (611)
Q Consensus 551 ip~~l~~~l~~L~~L~ls~n~ 571 (611)
....+...++.|+...+..+.
T Consensus 522 ~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 522 ACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHHHhCCCCEEEEecCCC
Confidence 444443345555555555443
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=8.7e-26 Score=239.17 Aligned_cols=214 Identities=27% Similarity=0.218 Sum_probs=117.9
Q ss_pred ccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchh
Q 047139 143 NSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDF 222 (611)
Q Consensus 143 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 222 (611)
++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|+ +.+..+..+.++++|++|++++|.++...+..
T Consensus 88 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 166 (452)
T 3zyi_A 88 QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYA 166 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTT
T ss_pred ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhH
Confidence 33445555666666666666666665555556666666666666665 33333344555666666666666665555555
Q ss_pred hhcCcccCCCCCCcEEEccCCC-CCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCC
Q 047139 223 IDGLSECINSSSLARLELGYNQ-LTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESF 301 (611)
Q Consensus 223 l~~l~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 301 (611)
+..++ +|++|++++|+ +....+..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..|..|
T Consensus 167 ~~~l~------~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~ 238 (452)
T 3zyi_A 167 FNRVP------SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSF 238 (452)
T ss_dssp TTTCT------TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGG
T ss_pred HhcCC------cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccc
Confidence 55554 66666666533 332222345556666666666666553 23 35555666666666666665555556
Q ss_pred CCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEeccccc
Q 047139 302 GQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQL 369 (611)
Q Consensus 302 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 369 (611)
.++++|++|++++|++.+..+. .+.++++|+.|++++|.. ....+..+..+++|+.|++++|.+
T Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSLIERN-AFDGLASLVELNLAHNNL---SSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCC---SCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCccCCCEEEeCCCcCceECHH-HhcCCCCCCEEECCCCcC---CccChHHhccccCCCEEEccCCCc
Confidence 6666666666666666554333 455666666666666332 222222334455666666666654
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=4.3e-26 Score=228.65 Aligned_cols=249 Identities=22% Similarity=0.233 Sum_probs=170.4
Q ss_pred EEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCc-ccccccCCCCCCCCEEEcccc
Q 047139 135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLE-GQLSRNLGTLCNLQTLKLSLN 213 (611)
Q Consensus 135 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~-~~~~~~l~~l~~L~~L~l~~n 213 (611)
++.+++.++ .+|..+. ++|++|++++|.++...+..|+++++|++|++++|.+.. +..+..+..+++|++|++++|
T Consensus 12 l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 12 IRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 333344433 4554432 688888888888885444457888888888888888421 223555667788888888888
Q ss_pred cCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCC-cccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCc
Q 047139 214 QFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP-ISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQ 292 (611)
Q Consensus 214 ~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 292 (611)
.+.. +|..+..++ +|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 89 ~i~~-l~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 89 GVIT-MSSNFLGLE------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp SEEE-EEEEEETCT------TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred cccc-ChhhcCCCC------CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 7764 444455555 77888888877775444 467777777777777777777777777777777777777777
Q ss_pred ccc-CCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCc
Q 047139 293 MNG-KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGP 371 (611)
Q Consensus 293 l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 371 (611)
+.+ .+|..+..+++|++|++++|.+.+..+. .+..+++|++|++++ |.+.+
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~---------------------------N~l~~ 213 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSH---------------------------NNFFS 213 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTT---------------------------SCCSB
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCC---------------------------CccCc
Confidence 765 4666777777777777777777664443 455555555555555 33344
Q ss_pred ccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccc
Q 047139 372 KFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGR 421 (611)
Q Consensus 372 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~ 421 (611)
..+..+..+++|++|++++|++++..|..+....++|++|++++|.+.+.
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 44456677888888888888888777776665545788888888877654
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-25 Score=222.49 Aligned_cols=215 Identities=25% Similarity=0.216 Sum_probs=182.1
Q ss_pred ccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 047139 106 HELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL 185 (611)
Q Consensus 106 ~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L 185 (611)
.++.. +|..+ .++|++|++++|++ ++..+..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 21 ~~l~~-ip~~~--~~~l~~L~l~~n~i----------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 21 QGLQA-VPVGI--PAASQRIFLHGNRI----------SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp SCCSS-CCTTC--CTTCSEEECTTSCC----------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccc-CCcCC--CCCceEEEeeCCcC----------CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 44543 34433 35666666666555 4555677899999999999999999888999999999999999
Q ss_pred cCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEcc
Q 047139 186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW 265 (611)
Q Consensus 186 s~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 265 (611)
++|..+....|..+.++++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|++|+++
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA------ALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc------CCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 999734555578899999999999999999988888888887 99999999999997777778999999999999
Q ss_pred CCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCcc
Q 047139 266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKT 340 (611)
Q Consensus 266 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~ 340 (611)
+|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSS
T ss_pred CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCC
Confidence 999997666679999999999999999998889999999999999999999987 45557889999999999884
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.8e-25 Score=233.40 Aligned_cols=211 Identities=26% Similarity=0.261 Sum_probs=101.3
Q ss_pred CCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhc
Q 047139 146 LPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDG 225 (611)
Q Consensus 146 ~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 225 (611)
.+..|.++++|++|+|++|.+++..+..|.++++|++|++++|+ ++...+..+.++++|++|++++|.++...+..+..
T Consensus 80 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 158 (440)
T 3zyj_A 80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158 (440)
T ss_dssp CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhh
Confidence 33445555555555555555554444455555555555555555 23323334555555555555555555444444444
Q ss_pred CcccCCCCCCcEEEccCCC-CCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCC
Q 047139 226 LSECINSSSLARLELGYNQ-LTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQL 304 (611)
Q Consensus 226 l~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 304 (611)
++ +|++|++++|+ +....+..|.++++|++|++++|.++ .+|. +..+++|++|++++|.+++..|..|.++
T Consensus 159 l~------~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 159 IP------SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp CT------TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred Cc------ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccC
Confidence 44 55555555532 22222224445555555555555554 2332 4455555555555555554445555555
Q ss_pred CCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEeccccc
Q 047139 305 SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQL 369 (611)
Q Consensus 305 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 369 (611)
++|++|++++|++.+..+. .+.++++|+.|++++|.. ....+..+..+++|+.|++++|.+
T Consensus 231 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQVIERN-AFDNLQSLVEINLAHNNL---TLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECTTCCCCEECTT-SSTTCTTCCEEECTTSCC---CCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccCCEEECCCCceeEEChh-hhcCCCCCCEEECCCCCC---CccChhHhccccCCCEEEcCCCCc
Confidence 5555555555555443332 455555555555555322 222222233344555555555543
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.9e-27 Score=238.92 Aligned_cols=248 Identities=19% Similarity=0.161 Sum_probs=157.5
Q ss_pred CCeEEccCCcCccCCCccccCCCCCCEEEccCCCC-CCCCCccCC-------CCCCCCEEEccCCCCCcccccccC--CC
Q 047139 132 FKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDL-QGDIPDGFS-------SLNSLQLLDLSGNSFLEGQLSRNL--GT 201 (611)
Q Consensus 132 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~-~~~~p~~l~-------~l~~L~~L~Ls~n~~~~~~~~~~l--~~ 201 (611)
++.|++++|.+ .+|..+... |++|++++|.+ ...+|..+. ++++|++|++++|. +++.+|..+ +.
T Consensus 45 L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 45 LEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPPPLLEAT 119 (312)
T ss_dssp CTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCCCSSSCC
T ss_pred ceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHHHHHHhc
Confidence 34444555555 566655544 77788888877 345666555 67888888888888 566777765 78
Q ss_pred CCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCccccc--CCCCc--
Q 047139 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGS--IPPSL-- 277 (611)
Q Consensus 202 l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l-- 277 (611)
+++|++|++++|.+++. |..++.+... ..++|++|++++|++++..|..++.+++|++|++++|++.+. +|..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~-~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQW-LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTT-CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHh-hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 88888888888888877 6666655100 012788888888888877777788888888888888877654 23333
Q ss_pred cCcccCceEEecCCcccc--CCC-cCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCC
Q 047139 278 GNLTFLEELYLTSNQMNG--KFP-ESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWI 354 (611)
Q Consensus 278 ~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 354 (611)
..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+.+..+...+..+++|++|++++|... .++....
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~----~ip~~~~ 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK----QVPKGLP 273 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS----SCCSSCC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC----hhhhhcc
Confidence 677778888888887763 122 223466777888888777777554435556667777777764432 2222222
Q ss_pred CCcceeEEEecccccCcccchhccCCCCCCEEEccCcccc
Q 047139 355 PPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASIS 394 (611)
Q Consensus 355 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 394 (611)
++|++|++++|++++. |. +..+++|++|++++|.++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 4555555555555443 33 445555555555555444
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=6.2e-25 Score=215.88 Aligned_cols=219 Identities=27% Similarity=0.355 Sum_probs=165.7
Q ss_pred CCCCCcccEEecCCCCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCC
Q 047139 67 EDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTL 146 (611)
Q Consensus 67 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~ 146 (611)
.++|.|.|+.|.- .+.++.+++++ ++++. +|..+. +++++|++++|++ ++..
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~--------------~~l~~-ip~~~~--~~l~~L~l~~n~l----------~~~~ 53 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSS--------------KKLTA-IPSNIP--ADTKKLDLQSNKL----------SSLP 53 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTT--------------SCCSS-CCSCCC--TTCSEEECCSSCC----------SCCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccC--------------CCCCc-cCCCCC--CCCCEEECcCCCC----------CeeC
Confidence 5899999999963 34556788887 55553 454443 4566665555544 4455
Q ss_pred CccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcC
Q 047139 147 PHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGL 226 (611)
Q Consensus 147 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 226 (611)
+..|.++++|++|++++|.++...+..|.++++|++|++++|+ +.+..+..+.++++|++|++++|.+++..+..+..+
T Consensus 54 ~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 132 (270)
T 2o6q_A 54 SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132 (270)
T ss_dssp TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC
Confidence 5678888999999999988886555567888889999998888 455555667888888888888888888777777777
Q ss_pred cccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCC
Q 047139 227 SECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSA 306 (611)
Q Consensus 227 ~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 306 (611)
+ +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++
T Consensus 133 ~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 133 T------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp T------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred c------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 6 8888888888888666666788888888888888888666666788888888888888888665566778888
Q ss_pred CCEEEccCCccccc
Q 047139 307 IRVLELSDNQWEGF 320 (611)
Q Consensus 307 L~~L~L~~n~l~~~ 320 (611)
|+.|++++|.+...
T Consensus 207 L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 207 LKMLQLQENPWDCT 220 (270)
T ss_dssp CCEEECCSSCBCCS
T ss_pred CCEEEecCCCeeCC
Confidence 88888888887654
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.3e-24 Score=236.28 Aligned_cols=266 Identities=24% Similarity=0.299 Sum_probs=146.9
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 313 (611)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4666666666666 5555444 56666666666665 3444 3466666666666665 3443 45666666666
Q ss_pred CCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCccc
Q 047139 314 DNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASI 393 (611)
Q Consensus 314 ~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l 393 (611)
+|.+++ ++. .+++|+.|++++|.. .+ +|.. +++|++|++++|++
T Consensus 110 ~N~l~~-l~~----~l~~L~~L~L~~N~l---------------------------~~-lp~~---l~~L~~L~Ls~N~l 153 (622)
T 3g06_A 110 SNPLTH-LPA----LPSGLCKLWIFGNQL---------------------------TS-LPVL---PPGLQELSVSDNQL 153 (622)
T ss_dssp SCCCCC-CCC----CCTTCCEEECCSSCC---------------------------SC-CCCC---CTTCCEEECCSSCC
T ss_pred CCcCCC-CCC----CCCCcCEEECCCCCC---------------------------Cc-CCCC---CCCCCEEECcCCcC
Confidence 666654 222 344555555554322 11 1111 24455555555544
Q ss_pred ccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccccc
Q 047139 394 SDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ 473 (611)
Q Consensus 394 ~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~ 473 (611)
++ +|. ..++|+.|++++|++++ +|. ....++.|++++|.+++ +|..+.+++.|++ ++|.++ .+|.
T Consensus 154 ~~-l~~----~~~~L~~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L-----~~N~l~-~l~~ 218 (622)
T 3g06_A 154 AS-LPA----LPSELCKLWAYNNQLTS-LPM--LPSGLQELSVSDNQLAS-LPTLPSELYKLWA-----YNNRLT-SLPA 218 (622)
T ss_dssp SC-CCC----CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEEC-----CSSCCS-SCCC
T ss_pred CC-cCC----ccCCCCEEECCCCCCCC-Ccc--cCCCCcEEECCCCCCCC-CCCccchhhEEEC-----cCCccc-ccCC
Confidence 43 222 12355555555555553 331 11245555555555543 3333344444333 666666 3343
Q ss_pred chhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChh
Q 047139 474 SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA 553 (611)
Q Consensus 474 ~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 553 (611)
. +++|++|++++|+++. +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|.
T Consensus 219 ~---~~~L~~L~Ls~N~L~~---------lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 219 L---PSGLKELIVSGNRLTS---------LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp C---CTTCCEEECCSSCCSC---------CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred C---CCCCCEEEccCCccCc---------CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence 2 3667777777776652 33 22456777777777776 4554 4567777777777777 6676
Q ss_pred HHhhcCCCCcEEECcCCcCcccCCccccC
Q 047139 554 WIGESMPSLSILRLRSNHFNGTIPSELCK 582 (611)
Q Consensus 554 ~l~~~l~~L~~L~ls~n~l~~~~p~~l~~ 582 (611)
.+.. +++|+.|++++|++++.+|..+..
T Consensus 279 ~l~~-l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 279 SLIH-LSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp GGGG-SCTTCEEECCSCCCCHHHHHHHHH
T ss_pred HHhh-ccccCEEEecCCCCCCcCHHHHHh
Confidence 6654 777777777777777766665543
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.7e-28 Score=268.09 Aligned_cols=405 Identities=16% Similarity=0.096 Sum_probs=234.8
Q ss_pred cccCCCCCCEEEccCCCCCC---CCCcc------------CCCCCCCCEEEccCCCCCcccccccCC-CCCCCCEEEccc
Q 047139 149 WLFNITNLLSLDLSSNDLQG---DIPDG------------FSSLNSLQLLDLSGNSFLEGQLSRNLG-TLCNLQTLKLSL 212 (611)
Q Consensus 149 ~l~~l~~L~~L~L~~n~~~~---~~p~~------------l~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~l~~ 212 (611)
.+..+++|++|+++++.... ..|.. ...+++|++|++++|. +++..+..+. .+++|++|++++
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCC
Confidence 46778899999999875321 12211 2467899999999998 5655555564 688999999998
Q ss_pred c-cCCCc-cchhhhcCcccCCCCCCcEEEccCCCCCccCCccc----CCCCCCcEEEccCCc--cccc-CCCCccCcccC
Q 047139 213 N-QFSGE-VSDFIDGLSECINSSSLARLELGYNQLTGNLPISL----GYLKNLRYLELWYNS--FLGS-IPPSLGNLTFL 283 (611)
Q Consensus 213 n-~l~~~-~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L 283 (611)
| .++.. ++.....++ +|++|++++|.+++..+..+ ..+++|++|++++|. +... ++..+..+++|
T Consensus 140 ~~~~~~~~l~~~~~~~~------~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L 213 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCR------NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213 (594)
T ss_dssp CEEEEHHHHHHHHHHCT------TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTC
T ss_pred cCCCCHHHHHHHHHhCC------CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCC
Confidence 8 44432 333444555 89999999998776544433 367799999999886 2211 11223456899
Q ss_pred ceEEecCCccccCCCcCCCCCCCCCEEEccCC-------ccccccChhhhcCCCCCCEE-EcCccCCCCceeeccCCCCC
Q 047139 284 EELYLTSNQMNGKFPESFGQLSAIRVLELSDN-------QWEGFITDAHLRNLTSLEEL-SLIKTSNSSLSFNISFDWIP 355 (611)
Q Consensus 284 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-------~l~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~ 355 (611)
++|++++|...+.++..+..+++|++|+++.+ .+.+ ++. .+.++++|+.+ .+.. .....++.....
T Consensus 214 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~-~l~~~~~L~~Ls~~~~----~~~~~l~~~~~~ 287 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV-ALSGCKELRCLSGFWD----AVPAYLPAVYSV 287 (594)
T ss_dssp CEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH-HHHTCTTCCEEECCBT----CCGGGGGGGHHH
T ss_pred cEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH-HHhcCCCcccccCCcc----cchhhHHHHHHh
Confidence 99999988333336777778889999986554 3333 233 57888999888 3333 111112222224
Q ss_pred CcceeEEEecccccCccc-chhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccC---------cccccccCcc
Q 047139 356 PFKLRYLVIRYYQLGPKF-PTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGG---------NHLSGRIPNT 425 (611)
Q Consensus 356 ~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~---------n~l~~~~~~~ 425 (611)
+++|+.|++++|.+.+.. ...+..+++|++|++++| +++.....+...+++|++|++++ +.+++.....
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 567888888887765432 334567788888888877 44444444444457788887743 2333221111
Q ss_pred cc--cCCCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchh-ccCCCCeEECc--C----CCCCCCCC
Q 047139 426 LV--FRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVG-NLKQLLTLVIS--N----NNLSDMTN 496 (611)
Q Consensus 426 ~~--~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~i~~l~~ 496 (611)
+. ...++.+++ +.|.+++..+..+. .+++|+.|+++ + +.+++.
T Consensus 367 l~~~~~~L~~L~~--------------------------~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-- 418 (594)
T 2p1m_B 367 VSMGCPKLESVLY--------------------------FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE-- 418 (594)
T ss_dssp HHHHCTTCCEEEE--------------------------EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC--
T ss_pred HHHhchhHHHHHH--------------------------hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC--
Confidence 11 113333333 44555444444443 35666666665 2 222211
Q ss_pred CcccccCcccccCcCCCCEEECcCCcccccCcccccC-CCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCccc
Q 047139 497 NNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKN-CSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT 575 (611)
Q Consensus 497 n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~ 575 (611)
.+...++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+...+++|++|++++|++++.
T Consensus 419 -~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 419 -PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp -CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred -chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 11112222344455666666655 444444444433 566666666666665555554433466666666666666443
Q ss_pred CCc-cccCCCCCCEeeccCCcCc
Q 047139 576 IPS-ELCKLSALHILDLSHNNLL 597 (611)
Q Consensus 576 ~p~-~l~~l~~L~~L~ls~n~l~ 597 (611)
.+. ....+++|++|++++|+++
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHhCCCCCEEeeeCCCCC
Confidence 332 2233556666666666553
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.4e-24 Score=230.85 Aligned_cols=153 Identities=27% Similarity=0.326 Sum_probs=85.6
Q ss_pred CCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCC
Q 047139 121 DLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG 200 (611)
Q Consensus 121 ~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~ 200 (611)
.++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++ + .+|.
T Consensus 41 ~l~~L~ls~n~L~-----------~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l-~-~lp~--- 98 (622)
T 3g06_A 41 GNAVLNVGESGLT-----------TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQL-T-SLPV--- 98 (622)
T ss_dssp CCCEEECCSSCCS-----------CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCC-S-CCCC---
T ss_pred CCcEEEecCCCcC-----------ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcC-C-cCCC---
Confidence 3555666555543 5566554 78888888888887 5555 567888888888884 3 3554
Q ss_pred CCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCc
Q 047139 201 TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNL 280 (611)
Q Consensus 201 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 280 (611)
.+++|++|++++|.+++..+ .++ +|++|++++|++++ +|.. +++|++|++++|.+++ +|. .+
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~----~l~------~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~ 160 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA----LPS------GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LP 160 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC----CCT------TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CC
T ss_pred CCCCCCEEECcCCcCCCCCC----CCC------CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---cc
Confidence 56677777777776664322 122 56666666666552 3332 2455555555555542 232 12
Q ss_pred ccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcc
Q 047139 281 TFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQW 317 (611)
Q Consensus 281 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 317 (611)
++|+.|++++|.+++ +| ..+++|+.|++++|.+
T Consensus 161 ~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 161 SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQL 193 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCC
Confidence 344455555554442 22 2234444444444443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-26 Score=233.88 Aligned_cols=91 Identities=21% Similarity=0.322 Sum_probs=65.5
Q ss_pred cCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCc-ccChhHHh
Q 047139 478 LKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS-GNIPAWIG 556 (611)
Q Consensus 478 l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~ 556 (611)
+++|++|++++|+++ .+|+.+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++ +.+|.++.
T Consensus 190 l~~L~~L~Ls~N~l~---------~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 190 FAKLKTLDLSSNKLA---------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp CTTCCEEECCSSCCC---------EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred cccCCEEECCCCcCC---------cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 567777777777665 34555666778888888888887 56777888888888888888887 66666666
Q ss_pred hcCCCCcEEECcCC-cCcccCCcc
Q 047139 557 ESMPSLSILRLRSN-HFNGTIPSE 579 (611)
Q Consensus 557 ~~l~~L~~L~ls~n-~l~~~~p~~ 579 (611)
. +++|+.|++++| .+.|..|..
T Consensus 260 ~-~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 260 K-NQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp T-CHHHHHHHHHHHHHHHSSSSCC
T ss_pred c-cccceEEECCCchhccCCchhc
Confidence 5 788888888844 455555544
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.9e-24 Score=227.45 Aligned_cols=236 Identities=22% Similarity=0.203 Sum_probs=195.4
Q ss_pred CCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhh
Q 047139 145 TLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID 224 (611)
Q Consensus 145 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 224 (611)
.+|..+. +++++|++++|.+++..|..|.++++|++|++++|. +.+..+..+.++++|++|++++|.+++..+..+.
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 4555443 689999999999998889999999999999999999 6677778999999999999999999988888888
Q ss_pred cCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC-CccCcccCceEEecCCccccCCCcCCCC
Q 047139 225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP-SLGNLTFLEELYLTSNQMNGKFPESFGQ 303 (611)
Q Consensus 225 ~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 303 (611)
.++ +|++|++++|++++..+..+.++++|++|++++|...+.++. .+..+++|++|++++|.+++ +| .+..
T Consensus 145 ~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~ 216 (452)
T 3zyi_A 145 YLS------KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTP 216 (452)
T ss_dssp SCT------TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTT
T ss_pred ccC------CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccc
Confidence 887 999999999999977777899999999999999654445554 68899999999999999985 44 5889
Q ss_pred CCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCC
Q 047139 304 LSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTEL 383 (611)
Q Consensus 304 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 383 (611)
+++|++|++++|.+.+..+. .+.++++|+.|++++|. +....+..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPG-SFHGLSSLKKLWVMNSQ---VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CTTCCEEECTTSCCSEECGG-GGTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccEEECcCCcCcccCcc-cccCccCCCEEEeCCCc---CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 99999999999999886555 79999999999999843 344444555666777777777777776666666777777
Q ss_pred CEEEccCccccc
Q 047139 384 TTLVLNSASISD 395 (611)
Q Consensus 384 ~~L~l~~n~l~~ 395 (611)
+.|++++|.+.-
T Consensus 293 ~~L~L~~Np~~C 304 (452)
T 3zyi_A 293 VELHLHHNPWNC 304 (452)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEccCCCcCC
Confidence 777777776653
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=7.3e-27 Score=235.29 Aligned_cols=268 Identities=19% Similarity=0.180 Sum_probs=185.1
Q ss_pred CCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCC
Q 047139 122 LEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGT 201 (611)
Q Consensus 122 L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~ 201 (611)
++.+.+.++.++..+++.+.+...++..+..+++|++|++++|.+++..|..|+++++|++|++++|. +.+..+ +..
T Consensus 2 i~~l~~~g~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~ 78 (317)
T 3o53_A 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LES 78 (317)
T ss_dssp CCEEEEETTEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE--ETT
T ss_pred cccccCCcCceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh--hhh
Confidence 34455556666666777776665555556667788888888888887777778888888888888887 444333 778
Q ss_pred CCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcc
Q 047139 202 LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLT 281 (611)
Q Consensus 202 l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 281 (611)
+++|++|++++|.+++..+ .+ +|++|++++|.+++..+.. +++|++|++++|++++..|..+..++
T Consensus 79 l~~L~~L~Ls~n~l~~l~~-----~~------~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~ 144 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELLV-----GP------SIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRS 144 (317)
T ss_dssp CTTCCEEECCSSEEEEEEE-----CT------TCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGS
T ss_pred cCCCCEEECcCCccccccC-----CC------CcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccC
Confidence 8888888888887764332 12 7888888888887554433 56788888888888876666777788
Q ss_pred cCceEEecCCccccCCCcCCC-CCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCccee
Q 047139 282 FLEELYLTSNQMNGKFPESFG-QLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLR 360 (611)
Q Consensus 282 ~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 360 (611)
+|++|++++|.+++..+..+. .+++|++|++++|.+++. + ....+++|++|++++|... .++..+..+++|+
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~l~~L~~L~Ls~N~l~----~l~~~~~~l~~L~ 217 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K--GQVVFAKLKTLDLSSNKLA----FMGPEFQSAAGVT 217 (317)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E--CCCCCTTCCEEECCSSCCC----EECGGGGGGTTCS
T ss_pred CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c--cccccccCCEEECCCCcCC----cchhhhcccCccc
Confidence 888888888888776665553 677888888888887764 2 2334777777777774432 1222345566777
Q ss_pred EEEecccccCcccchhccCCCCCCEEEccCcccc-cccchhHHhcCCCCCEEEccC
Q 047139 361 YLVIRYYQLGPKFPTWLRNQTELTTLVLNSASIS-DTLPSWFLQLNLTLDELDVGG 415 (611)
Q Consensus 361 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~ls~ 415 (611)
.|++++|.+. .+|..+..+++|+.|++++|.+. +..|.++.. .++|+.+++++
T Consensus 218 ~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~-~~~L~~l~l~~ 271 (317)
T 3o53_A 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQT 271 (317)
T ss_dssp EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT-CHHHHHHHHHH
T ss_pred EEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc-cccceEEECCC
Confidence 7777777766 45667777778888888888777 555555544 35667776663
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.7e-24 Score=225.82 Aligned_cols=235 Identities=22% Similarity=0.208 Sum_probs=194.3
Q ss_pred CCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhh
Q 047139 145 TLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID 224 (611)
Q Consensus 145 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 224 (611)
.+|..+. +++++|+|++|++.+..+..|.++++|++|++++|. +.+..+..|.++++|++|++++|.+++..+..+.
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 4565443 789999999999998888999999999999999999 5666678899999999999999999988888888
Q ss_pred cCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCC-CCccCcccCceEEecCCccccCCCcCCCC
Q 047139 225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP-PSLGNLTFLEELYLTSNQMNGKFPESFGQ 303 (611)
Q Consensus 225 ~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 303 (611)
.++ +|++|++++|.+++..+..+..+++|++|++++|...+.++ ..|.++++|++|++++|.++ .+| .+..
T Consensus 134 ~l~------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~ 205 (440)
T 3zyj_A 134 YLS------KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTP 205 (440)
T ss_dssp SCS------SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTT
T ss_pred ccc------cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCC
Confidence 887 99999999999998777889999999999999965444544 46899999999999999998 455 4889
Q ss_pred CCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCC
Q 047139 304 LSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTEL 383 (611)
Q Consensus 304 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 383 (611)
+++|++|+|++|.+.+..+. .+.++++|+.|++++|. +....+..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 206 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIRPG-SFQGLMHLQKLWMIQSQ---IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CSSCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCC---CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred CcccCEEECCCCccCccChh-hhccCccCCEEECCCCc---eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 99999999999999886565 78999999999999843 344444455566777777777777776666666777777
Q ss_pred CEEEccCcccc
Q 047139 384 TTLVLNSASIS 394 (611)
Q Consensus 384 ~~L~l~~n~l~ 394 (611)
+.|++++|.+.
T Consensus 282 ~~L~L~~Np~~ 292 (440)
T 3zyj_A 282 ERIHLHHNPWN 292 (440)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEcCCCCcc
Confidence 77777777664
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=8.1e-27 Score=234.39 Aligned_cols=252 Identities=18% Similarity=0.147 Sum_probs=157.5
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCC-------CCCCCCEEEcccccCCCccch
Q 047139 149 WLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG-------TLCNLQTLKLSLNQFSGEVSD 221 (611)
Q Consensus 149 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~ 221 (611)
.++..++|++|++++|.+ .+|..+... |++|++++|.+....+|..+. ++++|++|++++|.+++.+|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 355667788888888887 666655544 777788887743455666554 677888888888888777776
Q ss_pred hh--hcCcccCCCCCCcEEEccCCCCCccCCcccCCC-----CCCcEEEccCCcccccCCCCccCcccCceEEecCCccc
Q 047139 222 FI--DGLSECINSSSLARLELGYNQLTGNLPISLGYL-----KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN 294 (611)
Q Consensus 222 ~l--~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 294 (611)
.+ ..++ +|++|++++|++++. |..+..+ ++|++|++++|++.+..|..++++++|++|++++|++.
T Consensus 114 ~~~~~~l~------~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 114 PLLEATGP------DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp CSSSCCSC------CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred HHHHhcCC------CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 54 5555 788888888887765 6666655 77888888888777666677777778888888877766
Q ss_pred cC--CCcCC--CCCCCCCEEEccCCcccc--ccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccc
Q 047139 295 GK--FPESF--GQLSAIRVLELSDNQWEG--FITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ 368 (611)
Q Consensus 295 ~~--~~~~l--~~l~~L~~L~L~~n~l~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 368 (611)
+. .+..+ ..+++|++|++++|.+++ .++...+.++++|++|++++|..
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-------------------------- 240 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL-------------------------- 240 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC--------------------------
T ss_pred cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC--------------------------
Confidence 54 22233 677777888887777763 23333455667777777777433
Q ss_pred cCcccc-hhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccc
Q 047139 369 LGPKFP-TWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEG 443 (611)
Q Consensus 369 l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~ 443 (611)
.+..| ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |.......++.+++++|.+++
T Consensus 241 -~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 241 -RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -CSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred -CcccchhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 32222 22233445555555555554 4444332 3555555555555543 331112245555566555543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=8.7e-25 Score=232.86 Aligned_cols=229 Identities=19% Similarity=0.149 Sum_probs=179.4
Q ss_pred CCcceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceE
Q 047139 355 PPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSV 434 (611)
Q Consensus 355 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l 434 (611)
.+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..| ...+++|++|++++|.+++..+. ..++.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG----PSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence 34578888888888888778888888999999999998887666 33457899999999988754322 578889
Q ss_pred EccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCccccc-CcCCC
Q 047139 435 DLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIG-SLLTI 513 (611)
Q Consensus 435 ~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~-~l~~L 513 (611)
++++|.+++..+..+.+++.|++ ++|.+++..|..++.+++|++|++++|.++ +.+|..+. .+++|
T Consensus 105 ~L~~N~l~~~~~~~l~~L~~L~L-----~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~l~~~l~~L 171 (487)
T 3oja_A 105 HAANNNISRVSCSRGQGKKNIYL-----ANNKITMLRDLDEGCRSRVQYLDLKLNEID--------TVNFAELAASSDTL 171 (487)
T ss_dssp ECCSSCCCCEEECCCSSCEEEEC-----CSSCCCSGGGBCGGGGSSEEEEECTTSCCC--------EEEGGGGGGGTTTC
T ss_pred ECcCCcCCCCCccccCCCCEEEC-----CCCCCCCCCchhhcCCCCCCEEECCCCCCC--------CcChHHHhhhCCcc
Confidence 99999988877766665555544 999999888888889999999998887654 44566664 68899
Q ss_pred CEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccC
Q 047139 514 RFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSH 593 (611)
Q Consensus 514 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~ 593 (611)
++|+|++|.+++. | .+..+++|+.|+|++|++++ +|..+.. +++|+.|++++|++++ +|..+..+++|+.|++++
T Consensus 172 ~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~-l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 172 EHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQS-AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGG-GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTT
T ss_pred cEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcC-CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCC
Confidence 9999999999865 3 23468899999999999985 5555554 8999999999999995 788888889999999999
Q ss_pred CcCc-cCCCccccccC
Q 047139 594 NNLL-GPIPYCVGDFS 608 (611)
Q Consensus 594 n~l~-g~iP~~~~~~~ 608 (611)
|++. +.+|..++.++
T Consensus 247 N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 247 NGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp CCBCHHHHHHHHTTCH
T ss_pred CCCcCcchHHHHHhCC
Confidence 9987 77776666543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-24 Score=230.48 Aligned_cols=221 Identities=23% Similarity=0.206 Sum_probs=110.2
Q ss_pred ccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchh
Q 047139 143 NSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDF 222 (611)
Q Consensus 143 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 222 (611)
++..|..|..+++|++|+|++|.+++..| ++.+++|++|++++|.+ ++ +| ..++|++|++++|.+++..+..
T Consensus 47 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-~~-l~----~~~~L~~L~L~~N~l~~~~~~~ 118 (487)
T 3oja_A 47 SQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-QE-LL----VGPSIETLHAANNNISRVSCSR 118 (487)
T ss_dssp CCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEE-EE-EE----ECTTCCEEECCSSCCCCEEECC
T ss_pred CCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcC-CC-CC----CCCCcCEEECcCCcCCCCCccc
Confidence 33444455555555555555555554333 55555555555555552 21 11 1245555555555555443322
Q ss_pred hhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCcc-CcccCceEEecCCccccCCCcCC
Q 047139 223 IDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLG-NLTFLEELYLTSNQMNGKFPESF 301 (611)
Q Consensus 223 l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~l 301 (611)
++ +|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++. | ..
T Consensus 119 ---l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~ 187 (487)
T 3oja_A 119 ---GQ------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQ 187 (487)
T ss_dssp ---CS------SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CC
T ss_pred ---cC------CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-cc
Confidence 12 455555555555555555555555555555555555554444443 455555555555555533 1 12
Q ss_pred CCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCC
Q 047139 302 GQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQT 381 (611)
Q Consensus 302 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 381 (611)
..+++|+.|+|++|.+++. +. .+..+++|+.|++++ |.+.+ +|.++..++
T Consensus 188 ~~l~~L~~L~Ls~N~l~~~-~~-~~~~l~~L~~L~Ls~---------------------------N~l~~-lp~~l~~l~ 237 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKLAFM-GP-EFQSAAGVTWISLRN---------------------------NKLVL-IEKALRFSQ 237 (487)
T ss_dssp CCCTTCCEEECCSSCCCEE-CG-GGGGGTTCSEEECTT---------------------------SCCCE-ECTTCCCCT
T ss_pred ccCCCCCEEECCCCCCCCC-CH-hHcCCCCccEEEecC---------------------------CcCcc-cchhhccCC
Confidence 2355555555555555542 22 244444444444444 44442 455566666
Q ss_pred CCCEEEccCcccc-cccchhHHhcCCCCCEEEc
Q 047139 382 ELTTLVLNSASIS-DTLPSWFLQLNLTLDELDV 413 (611)
Q Consensus 382 ~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~l 413 (611)
+|+.|++++|.+. +.+|.++.. .+.++.+++
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~~~-l~~L~~l~~ 269 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAK 269 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHHTT-CHHHHHHHH
T ss_pred CCCEEEcCCCCCcCcchHHHHHh-CCCCcEEec
Confidence 6777777777666 444444433 234444444
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=6.9e-22 Score=194.08 Aligned_cols=200 Identities=29% Similarity=0.367 Sum_probs=167.4
Q ss_pred CCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCC
Q 047139 121 DLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG 200 (611)
Q Consensus 121 ~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~ 200 (611)
..+++++++++++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|. +....+..+.
T Consensus 17 ~~~~l~~~~~~l~-----------~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-----------AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFK 82 (270)
T ss_dssp TTTEEECTTSCCS-----------SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTS
T ss_pred CCCEEEccCCCCC-----------ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhc
Confidence 3456666665554 4565443 689999999999997777789999999999999999 4544445568
Q ss_pred CCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCc
Q 047139 201 TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNL 280 (611)
Q Consensus 201 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 280 (611)
++++|++|++++|.+++..+..+..++ +|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLV------NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCS------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCCEEECCCCcCCcCCHhHccccc------CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 899999999999999988887788777 99999999999998888888999999999999999997666668999
Q ss_pred ccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccC
Q 047139 281 TFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS 341 (611)
Q Consensus 281 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~ 341 (611)
++|++|++++|.+++..+..+.++++|++|++++|++++ ++...+..+++|+.|++++|+
T Consensus 157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCC
Confidence 999999999999997777778899999999999999986 444468888888888888843
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=4.6e-22 Score=196.06 Aligned_cols=216 Identities=27% Similarity=0.257 Sum_probs=130.7
Q ss_pred CCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhh
Q 047139 145 TLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFID 224 (611)
Q Consensus 145 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 224 (611)
.+|..+. ++|++|++++|.+++..+..|.++++|++|++++|. +.+..+..+.++++|++|++++|.+++..+..+.
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 3454432 467777777777776656567777777777777776 4444445666677777777777766666555555
Q ss_pred cCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCccccc-CCCCccCcccCceEEecCCccccCCCcCCCC
Q 047139 225 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGS-IPPSLGNLTFLEELYLTSNQMNGKFPESFGQ 303 (611)
Q Consensus 225 ~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 303 (611)
.++ +|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..
T Consensus 98 ~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 98 GLS------SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp TCT------TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CCc------cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 555 666666666666654444555666666666666665542 3555555555555555555555444444443
Q ss_pred CCCCC----EEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccC
Q 047139 304 LSAIR----VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRN 379 (611)
Q Consensus 304 l~~L~----~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 379 (611)
+++|+ .|++++|.+.+..+ ......+|+.|++++|.+.+..+..+..
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~-----------------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQP-----------------------------GAFKEIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECT-----------------------------TSSCSCCEEEEECCSSCCSCCCTTTTTT
T ss_pred hhhccccceeeecCCCcccccCc-----------------------------cccCCCcccEEECCCCceeecCHhHhcc
Confidence 33333 45555554443211 1222236777777777777665666777
Q ss_pred CCCCCEEEccCcccccccc
Q 047139 380 QTELTTLVLNSASISDTLP 398 (611)
Q Consensus 380 ~~~L~~L~l~~n~l~~~~p 398 (611)
+++|++|++++|.+.+..|
T Consensus 223 l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCSCCEEECCSSCBCCCTT
T ss_pred cccccEEEccCCcccccCC
Confidence 8888888888888876654
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3e-22 Score=194.37 Aligned_cols=160 Identities=28% Similarity=0.305 Sum_probs=100.1
Q ss_pred CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCC
Q 047139 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS 233 (611)
Q Consensus 154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~ 233 (611)
+++++|++++|.+.+..+..|.++++|++|++++|. +.+..+..+.++++|++|++++|.+++..+..+..++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------ 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT------ 107 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhcccC------
Confidence 345555555555555445455555555555555555 3444444455555555555555555555555555554
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 313 (611)
+|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 66666666666665555556667777777777777775555567777777777777777776666667777777777777
Q ss_pred CCccccc
Q 047139 314 DNQWEGF 320 (611)
Q Consensus 314 ~n~l~~~ 320 (611)
+|++.+.
T Consensus 188 ~N~~~c~ 194 (251)
T 3m19_A 188 GNQFDCS 194 (251)
T ss_dssp SCCBCTT
T ss_pred CCceeCC
Confidence 7777654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.6e-22 Score=198.82 Aligned_cols=177 Identities=28% Similarity=0.319 Sum_probs=91.9
Q ss_pred cCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccC
Q 047139 151 FNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECI 230 (611)
Q Consensus 151 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~ 230 (611)
..+++|+.|++++|.+. .++ .++.+++|++|++++|.+ .+ + ..+.++++|++|++++|.+++..+..+..++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l-~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~--- 109 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKL-HD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLT--- 109 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCC-CC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT---
T ss_pred ccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCC-CC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCc---
Confidence 34444555555555444 222 244455555555555542 22 1 2444555555555555555544444444444
Q ss_pred CCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEE
Q 047139 231 NSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL 310 (611)
Q Consensus 231 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 310 (611)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 110 ---~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 110 ---NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp ---TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ---CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 55555555555554444445555556666666655554444445555666666666666555444445555666666
Q ss_pred EccCCccccccChhhhcCCCCCCEEEcCc
Q 047139 311 ELSDNQWEGFITDAHLRNLTSLEELSLIK 339 (611)
Q Consensus 311 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 339 (611)
++++|++.+..+. .+..+++|+.|++++
T Consensus 187 ~L~~N~l~~~~~~-~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 187 RLYQNQLKSVPDG-VFDRLTSLQYIWLHD 214 (272)
T ss_dssp ECCSSCCSCCCTT-TTTTCTTCCEEECCS
T ss_pred ECCCCcCCccCHH-HHhCCcCCCEEEccC
Confidence 6666665553332 455555555555555
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.6e-23 Score=201.52 Aligned_cols=183 Identities=27% Similarity=0.354 Sum_probs=147.6
Q ss_pred ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139 116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL 195 (611)
Q Consensus 116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 195 (611)
...+++|+.|++++|.++ .+ ..+..+++|++|++++|.+++ + ..++.+++|++|++++|. +.+..
T Consensus 37 ~~~l~~L~~L~l~~~~i~-----------~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~-l~~~~ 101 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-----------SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQ-LQSLP 101 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-----------CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSC-CCCCC
T ss_pred cccccceeeeeeCCCCcc-----------cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCc-cCccC
Confidence 456677777777776654 22 247788899999999988885 3 368888899999999988 56666
Q ss_pred cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139 196 SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP 275 (611)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 275 (611)
+..++++++|++|++++|.+++..+..+..++ +|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLT------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHHHhccCC------CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 66678888999999999988887777777777 899999999988877777778888999999999988877676
Q ss_pred CccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccc
Q 047139 276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 319 (611)
Q Consensus 276 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 319 (611)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 77888899999999998888777778888899999999887764
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.8e-22 Score=198.99 Aligned_cols=203 Identities=27% Similarity=0.286 Sum_probs=168.7
Q ss_pred CCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccC
Q 047139 120 KDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNL 199 (611)
Q Consensus 120 ~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l 199 (611)
++|++|++++|++ ++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|+ +.+..+..+
T Consensus 28 ~~l~~L~ls~n~l----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPL----------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCCC----------CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred CCccEEECCCCcc----------cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhh
Confidence 3566666666555 44555678999999999999999997777789999999999999999 566667889
Q ss_pred CCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCcc-CCcccCCCCCCcEEEccCCcccccCCCCcc
Q 047139 200 GTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGN-LPISLGYLKNLRYLELWYNSFLGSIPPSLG 278 (611)
Q Consensus 200 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 278 (611)
.++++|++|++++|.+.+..+..+..++ +|++|++++|.+++. +|..+..+++|++|++++|++++..+..+.
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCT------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred cCCccccEEECCCCCccccCchhcccCC------CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 9999999999999999988777777777 999999999999863 688999999999999999999987777787
Q ss_pred CcccCc----eEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccC
Q 047139 279 NLTFLE----ELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS 341 (611)
Q Consensus 279 ~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~ 341 (611)
.+++|+ +|++++|.+++..+..+ ...+|++|++++|.+++. +...+..+++|+.|++++|+
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCC-CTTTTTTCCSCCEEECCSSC
T ss_pred hhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeec-CHhHhcccccccEEEccCCc
Confidence 777777 89999999986555544 445899999999999864 44467888899999888843
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.8e-21 Score=192.77 Aligned_cols=200 Identities=25% Similarity=0.177 Sum_probs=127.3
Q ss_pred ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139 116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL 195 (611)
Q Consensus 116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 195 (611)
+.+++++++++++++.++ .+|..+. +++++|++++|.+++..|..|.++++|++|++++|.+ ++ +
T Consensus 6 ~~~l~~l~~l~~~~~~l~-----------~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~-~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-----------ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TK-L 70 (290)
T ss_dssp EECSTTCCEEECTTSCCS-----------SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CE-E
T ss_pred ccccCCccEEECCCCCCC-----------cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-Cc-c
Confidence 556666777777666554 3444332 5667777777777666666677777777777777763 32 2
Q ss_pred cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139 196 SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP 275 (611)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 275 (611)
+.. +.+++|++|++++|.++ .+|..+..++ +|++|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus 71 ~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~------~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 142 (290)
T 1p9a_G 71 QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142 (290)
T ss_dssp ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCT------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred cCC-CCCCcCCEEECCCCcCC-cCchhhccCC------CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh
Confidence 322 56667777777777766 3444455554 677777777777755556667777777777777777655555
Q ss_pred CccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCcc
Q 047139 276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKT 340 (611)
Q Consensus 276 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~ 340 (611)
.+..+++|++|++++|++++..+..+..+++|++|++++|+++. +|. .+...++|+.+++++|
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~-~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPK-GFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCT-TTTTTCCCSEEECCSC
T ss_pred hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cCh-hhcccccCCeEEeCCC
Confidence 56667777777777777765444455667777777777777663 444 3455566777777764
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.5e-23 Score=215.23 Aligned_cols=115 Identities=11% Similarity=0.067 Sum_probs=75.9
Q ss_pred cCCCCeeecccccc----hhcc-CCCCeEECcCCCCCCCCCCcccccCcccccCc-CCCCEEECcCCcccccCc----cc
Q 047139 461 DISFNSINGSIPQS----VGNL-KQLLTLVISNNNLSDMTNNNFSGEIPESIGSL-LTIRFLVLSNNHLSGEIP----PS 530 (611)
Q Consensus 461 ~Ls~n~l~~~~~~~----l~~l-~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l-~~L~~L~Ls~n~l~~~~p----~~ 530 (611)
++++|.+++..+.. +..+ ++|++|+|++|++++.+. ..++..+... ++|++|+|++|.+++..+ ..
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY----AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH----HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHH
Confidence 33555555444433 3444 589999999988774332 1245555553 589999999999886544 34
Q ss_pred ccCCCCCCEEECCCCcCcccChhHH------hhcCCCCcEEECcCCcCcccCCcc
Q 047139 531 LKNCSLMDSLDLGENQLSGNIPAWI------GESMPSLSILRLRSNHFNGTIPSE 579 (611)
Q Consensus 531 l~~l~~L~~L~Ls~N~l~~~ip~~l------~~~l~~L~~L~ls~n~l~~~~p~~ 579 (611)
+..+++|+.|++++|.+.+..+..+ ...+++|+.|++++|++.+..+..
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 5677889999999998553333211 123677888999999988765544
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.2e-23 Score=218.15 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=26.6
Q ss_pred CCCCccCcccCceEEecCCccccC----CCcCCCCCCCCCEEEccCC
Q 047139 273 IPPSLGNLTFLEELYLTSNQMNGK----FPESFGQLSAIRVLELSDN 315 (611)
Q Consensus 273 ~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n 315 (611)
++..+..+++|++|++++|.+++. ++..+..+++|++|+|++|
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~ 70 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 70 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc
Confidence 445556666777777777766654 2333556666777777664
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.2e-23 Score=216.07 Aligned_cols=243 Identities=21% Similarity=0.242 Sum_probs=132.6
Q ss_pred CCccccCCCCCCEEEccCCCCCCCC----CccCCCCCCCCEEEccCCCC--CcccccccC-------CCCCCCCEEEccc
Q 047139 146 LPHWLFNITNLLSLDLSSNDLQGDI----PDGFSSLNSLQLLDLSGNSF--LEGQLSRNL-------GTLCNLQTLKLSL 212 (611)
Q Consensus 146 ~p~~l~~l~~L~~L~L~~n~~~~~~----p~~l~~l~~L~~L~Ls~n~~--~~~~~~~~l-------~~l~~L~~L~l~~ 212 (611)
++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+ +.+.+|..+ .++++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4555666666666666666665432 23355666666666666531 223344333 5666666666666
Q ss_pred ccCCC----ccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccC----CC---------CCCcEEEccCCccc-ccCC
Q 047139 213 NQFSG----EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLG----YL---------KNLRYLELWYNSFL-GSIP 274 (611)
Q Consensus 213 n~l~~----~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~l~-~~~p 274 (611)
|.+++ .++..+..++ +|++|++++|.+++..+..+. .+ ++|++|++++|+++ +.+|
T Consensus 104 n~l~~~~~~~l~~~l~~~~------~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHT------PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCT------TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred CcCCHHHHHHHHHHHHhCC------CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 66665 3444555554 666666666666533332222 22 66666666666665 2333
Q ss_pred ---CCccCcccCceEEecCCcccc-----CCCcCCCCCCCCCEEEccCCccc----cccChhhhcCCCCCCEEEcCccCC
Q 047139 275 ---PSLGNLTFLEELYLTSNQMNG-----KFPESFGQLSAIRVLELSDNQWE----GFITDAHLRNLTSLEELSLIKTSN 342 (611)
Q Consensus 275 ---~~l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~l~~l~~L~~L~l~~~~~ 342 (611)
..+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ +.++. .+..+++|++|++++|..
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCC
T ss_pred HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCC
Confidence 234456666677776666652 22335566666777777776664 33333 455555566665555322
Q ss_pred CCceeeccCCCCCCcceeEEEecccccCcc----cchhccC--CCCCCEEEccCccccc----ccchhHHhcCCCCCEEE
Q 047139 343 SSLSFNISFDWIPPFKLRYLVIRYYQLGPK----FPTWLRN--QTELTTLVLNSASISD----TLPSWFLQLNLTLDELD 412 (611)
Q Consensus 343 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~--~~~L~~L~l~~n~l~~----~~p~~~~~~~~~L~~L~ 412 (611)
++. ++..+.. +++|++|++++|.+++ .+|..+...+++|++|+
T Consensus 257 ---------------------------~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 257 ---------------------------SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp ---------------------------CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred ---------------------------chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 211 3344422 5556666666666655 35555544345666666
Q ss_pred ccCccccccc
Q 047139 413 VGGNHLSGRI 422 (611)
Q Consensus 413 ls~n~l~~~~ 422 (611)
+++|.+++..
T Consensus 310 l~~N~l~~~~ 319 (386)
T 2ca6_A 310 LNGNRFSEED 319 (386)
T ss_dssp CTTSBSCTTS
T ss_pred ccCCcCCcch
Confidence 6666655443
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=9.8e-21 Score=187.53 Aligned_cols=204 Identities=23% Similarity=0.269 Sum_probs=164.7
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcc
Q 047139 149 WLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE 228 (611)
Q Consensus 149 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 228 (611)
.+.+++++++++++++.++ .+|..+. +++++|++++|. +.+..+..+.++++|++|++++|.+++..+. +.++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~- 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLP- 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCT-
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCC-
Confidence 4778899999999999998 6676664 689999999999 5666778899999999999999999865443 4444
Q ss_pred cCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCC
Q 047139 229 CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR 308 (611)
Q Consensus 229 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 308 (611)
+|++|++++|+++ .+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|+
T Consensus 78 -----~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 78 -----VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp -----TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred -----cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 8999999999998 7788888999999999999999977777899999999999999999877777788899999
Q ss_pred EEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEc
Q 047139 309 VLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVL 388 (611)
Q Consensus 309 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 388 (611)
.|++++|++++ ++...+..+++|+.|++++|.. . .+|..+...++|+.+++
T Consensus 152 ~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l---------------------------~-~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 152 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL---------------------------Y-TIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp EEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCC---------------------------C-CCCTTTTTTCCCSEEEC
T ss_pred EEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcC---------------------------C-ccChhhcccccCCeEEe
Confidence 99999999885 4544677788888888877433 2 34444555566677777
Q ss_pred cCcccc
Q 047139 389 NSASIS 394 (611)
Q Consensus 389 ~~n~l~ 394 (611)
++|.+.
T Consensus 203 ~~Np~~ 208 (290)
T 1p9a_G 203 HGNPWL 208 (290)
T ss_dssp CSCCBC
T ss_pred CCCCcc
Confidence 766654
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.2e-24 Score=216.45 Aligned_cols=236 Identities=19% Similarity=0.231 Sum_probs=174.4
Q ss_pred CCCCCcccEEecCCCCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCC--CCCCEEECCCCCCCeEEccCCcCcc
Q 047139 67 EDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQL--KDLEYLDLSLNNFKVLDLSNNGFNS 144 (611)
Q Consensus 67 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--~~L~~L~ls~n~l~~L~L~~n~l~~ 144 (611)
..|.+|.++.|+. ..++.+++++ +.+. +..+..+ ++++.|++++|.+ .+
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~--------------~~~~---~~~~~~~~~~~l~~L~l~~n~l----------~~ 84 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTG--------------KNLH---PDVTGRLLSQGVIAFRCPRSFM----------DQ 84 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTT--------------CBCC---HHHHHHHHHTTCSEEECTTCEE----------CS
T ss_pred HHHHHHHHHhcCc--hhheeecccc--------------ccCC---HHHHHhhhhccceEEEcCCccc----------cc
Confidence 3455799988863 4567888877 4444 3445555 6777777666544 44
Q ss_pred CCCccccCCCCCCEEEccCCCCCCC-CCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccc-cCCCc-cch
Q 047139 145 TLPHWLFNITNLLSLDLSSNDLQGD-IPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN-QFSGE-VSD 221 (611)
Q Consensus 145 ~~p~~l~~l~~L~~L~L~~n~~~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~ 221 (611)
..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|. +++..+..++++++|++|++++| .+++. .+.
T Consensus 85 ~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 85 PLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp CCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred cchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH
Confidence 4444 56789999999999988765 77788889999999999998 66677888888999999999998 67653 566
Q ss_pred hhhcCcccCCCCCCcEEEccCC-CCCcc-CCcccCCCC-CCcEEEccCC--ccc-ccCCCCccCcccCceEEecCCc-cc
Q 047139 222 FIDGLSECINSSSLARLELGYN-QLTGN-LPISLGYLK-NLRYLELWYN--SFL-GSIPPSLGNLTFLEELYLTSNQ-MN 294 (611)
Q Consensus 222 ~l~~l~~~~~~~~L~~L~Ls~n-~l~~~-~p~~l~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~ 294 (611)
.+..++ +|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|++|++++|. ++
T Consensus 163 ~~~~~~------~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 163 LLSSCS------RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp HHHHCT------TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred HHhcCC------CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 677666 8999999998 88754 566677888 8999999988 454 4556667778888999998888 66
Q ss_pred cCCCcCCCCCCCCCEEEccCCc-cccccChhhhcCCCCCCEEEcCcc
Q 047139 295 GKFPESFGQLSAIRVLELSDNQ-WEGFITDAHLRNLTSLEELSLIKT 340 (611)
Q Consensus 295 ~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~~ 340 (611)
+..+..+.++++|++|++++|. +..... ..+..+++|+.|++++|
T Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 237 NDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence 6677778888888888888885 222111 24667777777777773
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=9.1e-23 Score=207.25 Aligned_cols=242 Identities=19% Similarity=0.215 Sum_probs=172.9
Q ss_pred CccccCC--CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccc-ccccCCCCCCCCEEEcccccCCCccchhh
Q 047139 147 PHWLFNI--TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQ-LSRNLGTLCNLQTLKLSLNQFSGEVSDFI 223 (611)
Q Consensus 147 p~~l~~l--~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 223 (611)
|..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|. +.+. ++..+.++++|++|++++|.+++..+..+
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l 138 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 138 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH
Confidence 4566667 8999999999998876655 6678999999999998 4444 77788889999999999998888778877
Q ss_pred hcCcccCCCCCCcEEEccCC-CCCcc-CCcccCCCCCCcEEEccCC-ccccc-CCCCccCcc-cCceEEecCC--ccc-c
Q 047139 224 DGLSECINSSSLARLELGYN-QLTGN-LPISLGYLKNLRYLELWYN-SFLGS-IPPSLGNLT-FLEELYLTSN--QMN-G 295 (611)
Q Consensus 224 ~~l~~~~~~~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~L~~n--~l~-~ 295 (611)
+.++ +|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +
T Consensus 139 ~~~~------~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 139 AKNS------NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp TTCT------TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred hcCC------CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 7766 8999999988 67653 5666778888888888888 77754 566677788 8888888888 444 3
Q ss_pred CCCcCCCCCCCCCEEEccCCc-cccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccc
Q 047139 296 KFPESFGQLSAIRVLELSDNQ-WEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFP 374 (611)
Q Consensus 296 ~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 374 (611)
.++..+..+++|++|++++|. +++..+. .+..+++|++|++++|.. +.....
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~--------------------------~~~~~~ 265 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYD--------------------------IIPETL 265 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTT--------------------------CCGGGG
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCC--------------------------CCHHHH
Confidence 455566677888888888887 5554444 566777777777777421 111222
Q ss_pred hhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccc
Q 047139 375 TWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLV 427 (611)
Q Consensus 375 ~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 427 (611)
..+..+++|++|++++| +++..-..+.. .+..|++++|++++..|....
T Consensus 266 ~~l~~~~~L~~L~l~~~-i~~~~~~~l~~---~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI-VPDGTLQLLKE---ALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGGCTTCCEEECTTS-SCTTCHHHHHH---HSTTSEESCCCSCCTTCSSCS
T ss_pred HHHhcCCCCCEEeccCc-cCHHHHHHHHh---hCcceEEecccCccccCCccc
Confidence 34666788888888887 44333333322 355555777777766665543
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=4.1e-23 Score=211.87 Aligned_cols=260 Identities=20% Similarity=0.173 Sum_probs=155.1
Q ss_pred EEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCC----ccCCCCC-CCCEEEccCCCCCcccccccCCCC-----CC
Q 047139 135 LDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIP----DGFSSLN-SLQLLDLSGNSFLEGQLSRNLGTL-----CN 204 (611)
Q Consensus 135 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p----~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l-----~~ 204 (611)
++++.|.+++.+|..+...++|++|++++|.+++..+ +.+.+++ +|++|++++|. +.+..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCC
Confidence 4566677777777777777778888888888876655 5677777 78888888887 455545555443 78
Q ss_pred CCEEEcccccCCCccchhhhcCcccCCC-CCCcEEEccCCCCCccCCccc----CC-CCCCcEEEccCCcccccCC----
Q 047139 205 LQTLKLSLNQFSGEVSDFIDGLSECINS-SSLARLELGYNQLTGNLPISL----GY-LKNLRYLELWYNSFLGSIP---- 274 (611)
Q Consensus 205 L~~L~l~~n~l~~~~~~~l~~l~~~~~~-~~L~~L~Ls~n~l~~~~p~~l----~~-l~~L~~L~L~~n~l~~~~p---- 274 (611)
|++|++++|.+++..+..+...- ... ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTL--AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHH--HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHH--HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 88888888888776666544320 011 278888888888876555443 23 3578888888887775332
Q ss_pred CCccCcc-cCceEEecCCccccCCCcCC----CCC-CCCCEEEccCCccccc----cChhhhcC-CCCCCEEEcCccCCC
Q 047139 275 PSLGNLT-FLEELYLTSNQMNGKFPESF----GQL-SAIRVLELSDNQWEGF----ITDAHLRN-LTSLEELSLIKTSNS 343 (611)
Q Consensus 275 ~~l~~l~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~~l~~-l~~L~~L~l~~~~~~ 343 (611)
..+...+ +|++|++++|.+++..+..+ ..+ ++|++|+|++|.+.+. ++. .+.. .++|++|++++|...
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCCC
Confidence 3334444 78888888888876555433 334 4788888888887652 222 2333 457777777774432
Q ss_pred Ccee-eccCCCCCCcceeEEEecccccCcc-------cchhccCCCCCCEEEccCcccccccc
Q 047139 344 SLSF-NISFDWIPPFKLRYLVIRYYQLGPK-------FPTWLRNQTELTTLVLNSASISDTLP 398 (611)
Q Consensus 344 ~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~-------~~~~l~~~~~L~~L~l~~n~l~~~~p 398 (611)
.... .+......+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+..+
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 1111 0111223334455555555542221 12233444455555555555544433
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.9e-21 Score=183.81 Aligned_cols=193 Identities=23% Similarity=0.224 Sum_probs=157.1
Q ss_pred eEEccCCcCccCCCccccCCCCCCEEEccCCC-CCCCCCccCCCCCCCCEEEccC-CCCCcccccccCCCCCCCCEEEcc
Q 047139 134 VLDLSNNGFNSTLPHWLFNITNLLSLDLSSND-LQGDIPDGFSSLNSLQLLDLSG-NSFLEGQLSRNLGTLCNLQTLKLS 211 (611)
Q Consensus 134 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~~L~l~ 211 (611)
+|++++|.+++..+..+.++++|++|++++|. +++..+..|.++++|++|++++ |. +.+..+..+.++++|++|+++
T Consensus 35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEE
T ss_pred EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCC
Confidence 44444445555566689999999999999997 8866667899999999999998 88 555555778899999999999
Q ss_pred cccCCCccchhhhcCcccCCCCCCc---EEEccCC-CCCccCCcccCCCCCCc-EEEccCCcccccCCCCccCcccCceE
Q 047139 212 LNQFSGEVSDFIDGLSECINSSSLA---RLELGYN-QLTGNLPISLGYLKNLR-YLELWYNSFLGSIPPSLGNLTFLEEL 286 (611)
Q Consensus 212 ~n~l~~~~~~~l~~l~~~~~~~~L~---~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L 286 (611)
+|.+++ +|. +..++ +|+ +|++++| .+++..+..|..+++|+ +|++++|+++ .+|......++|++|
T Consensus 114 ~n~l~~-lp~-~~~l~------~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L 184 (239)
T 2xwt_C 114 NTGLKM-FPD-LTKVY------STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV 184 (239)
T ss_dssp EECCCS-CCC-CTTCC------BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEE
T ss_pred CCCCcc-ccc-ccccc------ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEE
Confidence 999987 454 66555 666 9999999 99877777899999999 9999999998 556554444899999
Q ss_pred EecCCc-cccCCCcCCCCC-CCCCEEEccCCccccccChhhhcCCCCCCEEEcCcc
Q 047139 287 YLTSNQ-MNGKFPESFGQL-SAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKT 340 (611)
Q Consensus 287 ~L~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~ 340 (611)
++++|. +++..+..|..+ ++|++|++++|++++ +|.. .+++|+.|++.++
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK---GLEHLKELIARNT 236 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT---TCTTCSEEECTTC
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh---HhccCceeeccCc
Confidence 999995 887667788899 999999999999986 4442 6788889988873
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=5e-21 Score=191.92 Aligned_cols=194 Identities=20% Similarity=0.182 Sum_probs=95.3
Q ss_pred CCeEEccCCcCccCCCccc--cCCCCCCEEEccCCCCCCCCC----ccCCCCCCCCEEEccCCCCCcccccccCCCCCCC
Q 047139 132 FKVLDLSNNGFNSTLPHWL--FNITNLLSLDLSSNDLQGDIP----DGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNL 205 (611)
Q Consensus 132 l~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~~~~~~p----~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L 205 (611)
+++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|+ +.+..+..++++++|
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCC
Confidence 3355555555555555554 555555555555555554333 223445555555555555 344444555555555
Q ss_pred CEEEcccccCCCc--c--chhhhcCcccCCCCCCcEEEccCCCCCccCCc----ccCCCCCCcEEEccCCcccccCCCCc
Q 047139 206 QTLKLSLNQFSGE--V--SDFIDGLSECINSSSLARLELGYNQLTGNLPI----SLGYLKNLRYLELWYNSFLGSIPPSL 277 (611)
Q Consensus 206 ~~L~l~~n~l~~~--~--~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l 277 (611)
++|++++|++.+. . +..+..++ +|++|++++|+++ .++. .+..+++|++|++++|++++..|..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~------~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFP------AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSC------CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCC------CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 5555555554432 1 01112232 5555555555554 1111 12344555555555555555445444
Q ss_pred cCc---ccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCc
Q 047139 278 GNL---TFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIK 339 (611)
Q Consensus 278 ~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 339 (611)
..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~--~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ--PDELPEVDNLTLDG 303 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC--TTSCCCCSCEECSS
T ss_pred HhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch--hhhCCCccEEECcC
Confidence 443 35555555555555 3444442 4555555555555542 21 34445555555554
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.2e-20 Score=179.81 Aligned_cols=188 Identities=16% Similarity=0.197 Sum_probs=158.9
Q ss_pred ccceeeeCccccCCCCCCEEECCCCC-CCeEEccCCcCccCCCccccCCCCCCEEEccC-CCCCCCCCccCCCCCCCCEE
Q 047139 106 HELRGKISPSLLQLKDLEYLDLSLNN-FKVLDLSNNGFNSTLPHWLFNITNLLSLDLSS-NDLQGDIPDGFSSLNSLQLL 183 (611)
Q Consensus 106 ~~l~~~~~~~l~~l~~L~~L~ls~n~-l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L 183 (611)
+.+++..+..+..+++|++|++++|+ ++ +..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~----------~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 41 THLRTIPSHAFSNLPNISRIYVSIDVTLQ----------QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp CCCSEECTTTTTTCTTCCEEEEECCSSCC----------EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcceEECHHHccCCCCCcEEeCCCCCCcc----------eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 78888777789999999999888875 64 33455789999999999999 99997777889999999999
Q ss_pred EccCCCCCcccccccCCCCCCCC---EEEcccc-cCCCccchhhhcCcccCCCCCCc-EEEccCCCCCccCCcccCCCCC
Q 047139 184 DLSGNSFLEGQLSRNLGTLCNLQ---TLKLSLN-QFSGEVSDFIDGLSECINSSSLA-RLELGYNQLTGNLPISLGYLKN 258 (611)
Q Consensus 184 ~Ls~n~~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~~~~~~~L~-~L~Ls~n~l~~~~p~~l~~l~~ 258 (611)
++++|++ .+ +|. +.++++|+ +|++++| .+++..+..+..++ +|+ +|++++|+++ .+|......++
T Consensus 111 ~l~~n~l-~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~------~L~~~L~l~~n~l~-~i~~~~~~~~~ 180 (239)
T 2xwt_C 111 GIFNTGL-KM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC------NETLTLKLYNNGFT-SVQGYAFNGTK 180 (239)
T ss_dssp EEEEECC-CS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB------SSEEEEECCSCCCC-EECTTTTTTCE
T ss_pred eCCCCCC-cc-ccc-cccccccccccEEECCCCcchhhcCcccccchh------cceeEEEcCCCCCc-ccCHhhcCCCC
Confidence 9999994 44 666 88888888 9999999 99988888888887 999 9999999999 55555444489
Q ss_pred CcEEEccCCc-ccccCCCCccCc-ccCceEEecCCccccCCCcCCCCCCCCCEEEccCCc
Q 047139 259 LRYLELWYNS-FLGSIPPSLGNL-TFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ 316 (611)
Q Consensus 259 L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 316 (611)
|++|++++|+ +++..+..+..+ ++|++|++++|.+++ +|.. .+++|+.|+++++.
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 9999999995 886667788999 999999999999984 5543 67899999998763
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=8.3e-21 Score=190.34 Aligned_cols=196 Identities=20% Similarity=0.167 Sum_probs=158.9
Q ss_pred ccccccceeeeCccc--cCCCCCCEEECCCCCCCeEEccCCcCccCCC----ccccCCCCCCEEEccCCCCCCCCCccCC
Q 047139 102 DDAVHELRGKISPSL--LQLKDLEYLDLSLNNFKVLDLSNNGFNSTLP----HWLFNITNLLSLDLSSNDLQGDIPDGFS 175 (611)
Q Consensus 102 ~~~~~~l~~~~~~~l--~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 175 (611)
++..+.+.+..|..+ ..+++|++|++++|.++ +..+ ..+..+++|++|++++|.+.+..|..++
T Consensus 97 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~----------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 97 TLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA----------TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp EEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS----------STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred EeeCCEeccchhhhhhhccCCCCCEEEeeccccc----------chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 334478888888877 77888887777776653 4433 3456799999999999999988889999
Q ss_pred CCCCCCEEEccCCCCCccc--cc--ccCCCCCCCCEEEcccccCCCccch---hhhcCcccCCCCCCcEEEccCCCCCcc
Q 047139 176 SLNSLQLLDLSGNSFLEGQ--LS--RNLGTLCNLQTLKLSLNQFSGEVSD---FIDGLSECINSSSLARLELGYNQLTGN 248 (611)
Q Consensus 176 ~l~~L~~L~Ls~n~~~~~~--~~--~~l~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~~~~~~~L~~L~Ls~n~l~~~ 248 (611)
++++|++|++++|++ .+. ++ ..++++++|++|++++|.++...+. .+..++ +|++|++++|++++.
T Consensus 167 ~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~------~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 167 AFPALTSLDLSDNPG-LGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV------QPHSLDLSHNSLRAT 239 (310)
T ss_dssp CCTTCCEEECCSCTT-CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC------CCSSEECTTSCCCCC
T ss_pred cCCCCCEEECCCCCC-ccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC------CCCEEECCCCCCCcc
Confidence 999999999999984 321 22 3347899999999999999743221 245666 999999999999988
Q ss_pred CCcccCCC---CCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccc
Q 047139 249 LPISLGYL---KNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 319 (611)
Q Consensus 249 ~p~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 319 (611)
.|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 88888876 69999999999999 7788775 8999999999999963 43 6788999999999999864
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.1e-19 Score=176.22 Aligned_cols=177 Identities=25% Similarity=0.305 Sum_probs=153.4
Q ss_pred CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCC
Q 047139 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS 233 (611)
Q Consensus 154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~ 233 (611)
...++++++++.++ .+|..+. +++++|++++|. +.+..+..+.++++|++|++++|.+++..+..+..++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------ 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT------ 83 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC------
Confidence 34578888888888 6776665 689999999999 6777777899999999999999999998888888887
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 313 (611)
+|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+|+
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 99999999999998777888999999999999999997766678899999999999999997777689999999999999
Q ss_pred CCccccccChhhhcCCCCCCEEEcCccC
Q 047139 314 DNQWEGFITDAHLRNLTSLEELSLIKTS 341 (611)
Q Consensus 314 ~n~l~~~~~~~~l~~l~~L~~L~l~~~~ 341 (611)
+|++.+..+ ..+..+++|+.|++++|+
T Consensus 164 ~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 164 TNQLQSVPH-GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SSCCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred CCcCCccCH-HHHhCCCCCCEEEeeCCc
Confidence 999987544 378888888888888843
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.6e-20 Score=185.27 Aligned_cols=192 Identities=26% Similarity=0.359 Sum_probs=136.2
Q ss_pred ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139 116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL 195 (611)
Q Consensus 116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 195 (611)
...+++|++|++++|.++ .+| .+..+++|++|++++|.+++. +. +..+++|++|++++|++ .+ +
T Consensus 37 ~~~l~~L~~L~l~~~~i~-----------~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l-~~-~ 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-----------TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPL-KN-V 100 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-----------CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCC-SC-C
T ss_pred HHHcCCcCEEEeeCCCcc-----------Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcC-CC-c
Confidence 345667777777776654 234 477788888888888888743 43 88888888888888884 33 3
Q ss_pred cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139 196 SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP 275 (611)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 275 (611)
..+.++++|++|++++|.+++..+ +..++ +|++|++++|.+++..+ +..+++|++|++++|.+++. +.
T Consensus 101 -~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~ 168 (308)
T 1h6u_A 101 -SAIAGLQSIKTLDLTSTQITDVTP--LAGLS------NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP 168 (308)
T ss_dssp -GGGTTCTTCCEEECTTSCCCCCGG--GTTCT------TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG
T ss_pred -hhhcCCCCCCEEECCCCCCCCchh--hcCCC------CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh
Confidence 357788888888888888776432 55555 78888888888875433 77778888888888887753 33
Q ss_pred CccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccC
Q 047139 276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTS 341 (611)
Q Consensus 276 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~ 341 (611)
+..+++|++|++++|.+++. +. +..+++|++|++++|++.+.. .+..+++|+.|++++|.
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEE
T ss_pred -hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCe
Confidence 77778888888888887743 32 677788888888888877643 26677777777777743
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.9e-20 Score=174.02 Aligned_cols=163 Identities=28% Similarity=0.280 Sum_probs=127.4
Q ss_pred CCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccC
Q 047139 120 KDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNL 199 (611)
Q Consensus 120 ~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l 199 (611)
++|++|++++|++ ++..+..+.++++|++|++++|++++..+..|.++++|++|++++|. +.+..+..+
T Consensus 28 ~~l~~L~l~~n~l----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 96 (208)
T 2o6s_A 28 AQTTYLDLETNSL----------KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVF 96 (208)
T ss_dssp TTCSEEECCSSCC----------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCcEEEcCCCcc----------CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHh
Confidence 4566666655544 44555668889999999999999986666678889999999999998 555555567
Q ss_pred CCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccC
Q 047139 200 GTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGN 279 (611)
Q Consensus 200 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 279 (611)
.++++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|++|++++|.+.+ .
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~ 163 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLT------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------T 163 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------C
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCC------cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------C
Confidence 8889999999999998877777777776 88888998888886666667888888888888887654 3
Q ss_pred cccCceEEecCCccccCCCcCCCCCCC
Q 047139 280 LTFLEELYLTSNQMNGKFPESFGQLSA 306 (611)
Q Consensus 280 l~~L~~L~L~~n~l~~~~~~~l~~l~~ 306 (611)
+++|++|+++.|.++|.+|.+++.++.
T Consensus 164 ~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 164 CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCHHHHHHHHHhCCceeeccCccccC
Confidence 457888888888888888887776654
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=2.9e-20 Score=199.66 Aligned_cols=205 Identities=24% Similarity=0.281 Sum_probs=165.1
Q ss_pred CC-CCCCCC-----CcccE-EecCCCCcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeE
Q 047139 63 SW-VGEDCC-----SWRGV-GCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVL 135 (611)
Q Consensus 63 ~W-~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L 135 (611)
+| .+.++| .|.|+ .|.. ++++.|++++ +++++ +|..+. ++|++|++++|+++
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~--------------n~L~~-lp~~l~--~~L~~L~Ls~N~l~-- 93 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNR--------------LNLSS-LPDNLP--PQITVLEITQNALI-- 93 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCS--------------SCCSC-CCSCCC--TTCSEEECCSSCCS--
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCC--------------CCCCc-cCHhHc--CCCCEEECcCCCCc--
Confidence 45 444566 69999 7863 5799999999 77776 777663 77888887777664
Q ss_pred EccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccC
Q 047139 136 DLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF 215 (611)
Q Consensus 136 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 215 (611)
.+| ..+++|++|++++|.+++ +|. +.+ +|++|++++|.+ ++ +|. .+++|++|++++|.+
T Consensus 94 ---------~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l-~~-lp~---~l~~L~~L~Ls~N~l 152 (571)
T 3cvr_A 94 ---------SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQL-TM-LPE---LPALLEYINADNNQL 152 (571)
T ss_dssp ---------CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCC-SC-CCC---CCTTCCEEECCSSCC
T ss_pred ---------ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcC-CC-CCC---cCccccEEeCCCCcc
Confidence 456 457999999999999996 777 766 999999999994 44 666 689999999999999
Q ss_pred CCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccC-------ceEEe
Q 047139 216 SGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFL-------EELYL 288 (611)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------~~L~L 288 (611)
++ +|. .++ +|++|++++|++++ +|. +. ++|++|++++|.++ .+|. +.. +| ++|++
T Consensus 153 ~~-lp~---~l~------~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 153 TM-LPE---LPT------SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRC 214 (571)
T ss_dssp SC-CCC---CCT------TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEEC
T ss_pred Cc-CCC---cCC------CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEec
Confidence 87 444 334 99999999999996 777 66 89999999999998 7777 654 77 99999
Q ss_pred cCCccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCC
Q 047139 289 TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNL 329 (611)
Q Consensus 289 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 329 (611)
++|.++ .+|..+..+++|+.|+|++|.+++.+|. .+..+
T Consensus 215 s~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l 253 (571)
T 3cvr_A 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE-SLSQQ 253 (571)
T ss_dssp CSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH-HHHHH
T ss_pred CCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH-HHHHh
Confidence 999998 5888888899999999999999998776 45544
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=2.1e-19 Score=179.69 Aligned_cols=191 Identities=28% Similarity=0.385 Sum_probs=160.6
Q ss_pred CcEEEEeCCCCCCCCCCcccccccccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEc
Q 047139 82 GSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDL 161 (611)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 161 (611)
.+++.+++++ +.+.. ++ .+..+++|++|++++|.++ .++. +.++++|++|++
T Consensus 41 ~~L~~L~l~~--------------~~i~~-l~-~~~~l~~L~~L~L~~n~i~-----------~~~~-~~~l~~L~~L~L 92 (308)
T 1h6u_A 41 DGITTLSAFG--------------TGVTT-IE-GVQYLNNLIGLELKDNQIT-----------DLAP-LKNLTKITELEL 92 (308)
T ss_dssp HTCCEEECTT--------------SCCCC-CT-TGGGCTTCCEEECCSSCCC-----------CCGG-GTTCCSCCEEEC
T ss_pred CCcCEEEeeC--------------CCccC-ch-hhhccCCCCEEEccCCcCC-----------CChh-HccCCCCCEEEc
Confidence 4678888888 55554 33 6888999999999888775 3444 899999999999
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEcc
Q 047139 162 SSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELG 241 (611)
Q Consensus 162 ~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls 241 (611)
++|.+++ ++ .+..+++|++|++++|++ .+ ++ .+.++++|++|++++|.+++..+ +..++ +|++|+++
T Consensus 93 ~~n~l~~-~~-~~~~l~~L~~L~l~~n~l-~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~------~L~~L~l~ 159 (308)
T 1h6u_A 93 SGNPLKN-VS-AIAGLQSIKTLDLTSTQI-TD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLT------NLQYLSIG 159 (308)
T ss_dssp CSCCCSC-CG-GGTTCTTCCEEECTTSCC-CC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCT------TCCEEECC
T ss_pred cCCcCCC-ch-hhcCCCCCCEEECCCCCC-CC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCC------CccEEEcc
Confidence 9999985 44 699999999999999994 43 44 38999999999999999987655 66666 99999999
Q ss_pred CCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccc
Q 047139 242 YNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 319 (611)
Q Consensus 242 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 319 (611)
+|.+++. +. +..+++|++|++++|.+++. +. +..+++|++|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 160 ~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 160 NAQVSDL-TP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCcCCCC-hh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 9999854 33 88999999999999999854 33 8899999999999999986543 8899999999999999876
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=4.7e-20 Score=198.00 Aligned_cols=186 Identities=26% Similarity=0.389 Sum_probs=85.4
Q ss_pred ceeEEEecccccCcccchhccCCCCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEcc
Q 047139 358 KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLS 437 (611)
Q Consensus 358 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls 437 (611)
+++.|++++|.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. .++.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~L- 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDV- 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEEC-
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc-CCCEEEC-
Confidence 45555555555443 33332 144555555555554 333 123445555555555543 333 221 4444444
Q ss_pred CCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEE
Q 047139 438 SNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLV 517 (611)
Q Consensus 438 ~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~ 517 (611)
++|.+++ +|. .+++|++|++++|+++. +|. .+++|++|+
T Consensus 128 -------------------------s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~---------lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 128 -------------------------DNNQLTM-LPE---LPALLEYINADNNQLTM---------LPE---LPTSLEVLS 166 (571)
T ss_dssp -------------------------CSSCCSC-CCC---CCTTCCEEECCSSCCSC---------CCC---CCTTCCEEE
T ss_pred -------------------------CCCcCCC-CCC---cCccccEEeCCCCccCc---------CCC---cCCCcCEEE
Confidence 5555543 333 34455555555544431 222 234455555
Q ss_pred CcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCC-------cEEECcCCcCcccCCccccCCCCCCEee
Q 047139 518 LSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSL-------SILRLRSNHFNGTIPSELCKLSALHILD 590 (611)
Q Consensus 518 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L-------~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 590 (611)
|++|++++ +|. +. ++|+.|+|++|+|+ .+|. +. .+| +.|++++|+|+ .+|..+..+++|+.|+
T Consensus 167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236 (571)
T ss_dssp CCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEE
T ss_pred CCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEE
Confidence 55555553 343 33 45555555555554 4444 21 133 55555555555 3455444455555555
Q ss_pred ccCCcCccCCCccccc
Q 047139 591 LSHNNLLGPIPYCVGD 606 (611)
Q Consensus 591 ls~n~l~g~iP~~~~~ 606 (611)
+++|++++.+|..+.+
T Consensus 237 L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 237 LEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCSSSCCHHHHHHHHH
T ss_pred eeCCcCCCcCHHHHHH
Confidence 5555555555544443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=7.4e-19 Score=179.21 Aligned_cols=162 Identities=23% Similarity=0.115 Sum_probs=68.1
Q ss_pred cccCCCCCCEEEccCCCCCCCCC-ccCCCCCCCCE-EEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcC
Q 047139 149 WLFNITNLLSLDLSSNDLQGDIP-DGFSSLNSLQL-LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGL 226 (611)
Q Consensus 149 ~l~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~-L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 226 (611)
.|.++++|++|+|++|++.+.+| .+|.+++++++ +.+++|+ +....|..+.++++|++|++++|.+.+..+..+...
T Consensus 49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~ 127 (350)
T 4ay9_X 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127 (350)
T ss_dssp SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhccccccccccccccccCCchhhccc
Confidence 44555555555555555443333 23444444443 2333344 333334444555555555555555544433333222
Q ss_pred cccCCCCCCcEEEccC-CCCCccCCcccCCCC-CCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCC-cCCCC
Q 047139 227 SECINSSSLARLELGY-NQLTGNLPISLGYLK-NLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFP-ESFGQ 303 (611)
Q Consensus 227 ~~~~~~~~L~~L~Ls~-n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~ 303 (611)
. ++..+++.+ +.+....+..+..+. .+++|++++|+++ .+|.......+|+++++.+++..+.+| ..|.+
T Consensus 128 ~------~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 128 L------QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp S------SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred c------hhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhcc
Confidence 2 444444433 233322223333332 3444555555544 233333333444555544322222222 23444
Q ss_pred CCCCCEEEccCCccc
Q 047139 304 LSAIRVLELSDNQWE 318 (611)
Q Consensus 304 l~~L~~L~L~~n~l~ 318 (611)
+++|++|++++|+++
T Consensus 201 l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 201 ASGPVILDISRTRIH 215 (350)
T ss_dssp EECCSEEECTTSCCC
T ss_pred CcccchhhcCCCCcC
Confidence 455555555555444
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=7.5e-19 Score=165.17 Aligned_cols=177 Identities=26% Similarity=0.299 Sum_probs=144.4
Q ss_pred EccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccC
Q 047139 136 DLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF 215 (611)
Q Consensus 136 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 215 (611)
+.+++.++ .+|..+ .++|++|++++|++++..+..++++++|++|++++|+ +.+..+..+.++++|++|++++|.+
T Consensus 13 ~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 13 ECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp ECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcC
Confidence 33333333 345433 4689999999999997777778999999999999999 5555556678999999999999999
Q ss_pred CCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCcccc
Q 047139 216 SGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNG 295 (611)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 295 (611)
++..+..+..++ +|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 89 ~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 89 QSLPNGVFDKLT------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CccCHhHhcCcc------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 988777777777 99999999999997777778899999999999999997666668899999999999997764
Q ss_pred CCCcCCCCCCCCCEEEccCCccccccChhhhcCCC
Q 047139 296 KFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLT 330 (611)
Q Consensus 296 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 330 (611)
.++.|+.|+++.|+++|.+|. .++.++
T Consensus 163 -------~~~~l~~L~~~~n~~~g~ip~-~~~~l~ 189 (208)
T 2o6s_A 163 -------TCPGIRYLSEWINKHSGVVRN-SAGSVA 189 (208)
T ss_dssp -------CTTTTHHHHHHHHHCTTTBBC-TTSSBC
T ss_pred -------CCCCHHHHHHHHHhCCceeec-cCcccc
Confidence 456789999999999998886 455443
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.6e-18 Score=165.39 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=14.5
Q ss_pred CCCCCCCCCCcccEEecC
Q 047139 62 SSWVGEDCCSWRGVGCNN 79 (611)
Q Consensus 62 ~~W~~~~~c~w~gv~c~~ 79 (611)
..|.+...|.|++|.|..
T Consensus 11 ~~~~~~~~Cs~~~v~c~~ 28 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS 28 (229)
T ss_dssp CCCCTTCEEETTEEECTT
T ss_pred ccCCCCCEEeCCEeEccC
Confidence 345788889999999964
No 101
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=2.1e-20 Score=208.16 Aligned_cols=237 Identities=20% Similarity=0.200 Sum_probs=136.1
Q ss_pred CCHHHHHHHHHHHhcCCCCC-CCCCCC--CCCCCCCcccEEecCCCCcEEEEeCCCCCCCCCCcccccccccceeeeCcc
Q 047139 39 CKEVEREALLQFKQNLTDPS-GRLSSW--VGEDCCSWRGVGCNNRTGSIIMLNLNNPFRDSFDSYEDDAVHELRGKISPS 115 (611)
Q Consensus 39 ~~~~~~~~ll~~k~~~~~~~-~~~~~W--~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 115 (611)
....+++++.++..+...+. ..-..| .....+.|.++.+.. ++++.+++.+ +.+...
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~--------------n~~~~~---- 188 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFA--------------NGKDEA---- 188 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeC--------------CCCCcc----
Confidence 56678899999987764221 223457 344567899988864 7899999977 444441
Q ss_pred ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139 116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL 195 (611)
Q Consensus 116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 195 (611)
....++.++|+.+.+..++++.|.+. ..|..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.+ + .+
T Consensus 189 --~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l-~-~l 262 (727)
T 4b8c_D 189 --NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL-T-EL 262 (727)
T ss_dssp ------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC-S-CC
T ss_pred --hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC-c-cc
Confidence 23346778889999999998888877 67788999999999999999998 7888888999999999999995 4 78
Q ss_pred cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139 196 SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP 275 (611)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 275 (611)
|..++++++|++|+|++|.++ .+|..++.++ +|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|.
T Consensus 263 p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~------~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 263 PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF------QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT------TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC------CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 999999999999999999999 6788888887 9999999999998 7898999999999999999999998888
Q ss_pred CccCccc-CceEEecCCccccCCCcCCCCCCCCCEEEccCC
Q 047139 276 SLGNLTF-LEELYLTSNQMNGKFPESFGQLSAIRVLELSDN 315 (611)
Q Consensus 276 ~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 315 (611)
.+..+.. ...+++++|.+++.+|.. |+.|+++.|
T Consensus 335 ~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 335 ILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred HHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 7765432 335789999999888764 455666665
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=8.2e-18 Score=159.33 Aligned_cols=118 Identities=22% Similarity=0.213 Sum_probs=74.1
Q ss_pred CCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCcc
Q 047139 199 LGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLG 278 (611)
Q Consensus 199 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 278 (611)
+.++++|++|++++|.+++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|++++..|..+.
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 126 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGAS------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI 126 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCC------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC
Confidence 44455555555555555544444455444 556666666666555555566666666677777766666666666
Q ss_pred CcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccC
Q 047139 279 NLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFIT 322 (611)
Q Consensus 279 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 322 (611)
.+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+
T Consensus 127 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77777777777777776666677777777777777777765544
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=5.6e-18 Score=167.80 Aligned_cols=172 Identities=28% Similarity=0.356 Sum_probs=121.8
Q ss_pred cCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccc
Q 047139 117 LQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLS 196 (611)
Q Consensus 117 ~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~ 196 (611)
..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +.++++|++|++++|.+ .+ +
T Consensus 43 ~~l~~L~~L~l~~~~i~-----------~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l-~~-~- 105 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-----------SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV-KD-L- 105 (291)
T ss_dssp HHHHTCCEEECTTSCCC-----------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CC-G-
T ss_pred hhcCcccEEEccCCCcc-----------cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC-CC-C-
Confidence 45667777777776654 223 37778888888888888875433 88888888888888884 32 3
Q ss_pred ccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCC
Q 047139 197 RNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS 276 (611)
Q Consensus 197 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 276 (611)
..+.++++|++|++++|.+++. ..+..++ +|++|++++|++++. ..+..+++|++|++++|.+++..|
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDI--NGLVHLP------QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCC--GGGGGCT------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred hhhccCCCCCEEECCCCcCCCC--hhhcCCC------CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence 3477888888888888887764 3455554 788888888877754 566777778888888777775433
Q ss_pred ccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccc
Q 047139 277 LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 319 (611)
Q Consensus 277 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 319 (611)
+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus 174 l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 7777777777777777764 33 36777777777777777654
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=1.1e-17 Score=170.59 Aligned_cols=241 Identities=15% Similarity=0.086 Sum_probs=118.1
Q ss_pred cEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCC-cCCCCCCCCCE-EEcc
Q 047139 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFP-ESFGQLSAIRV-LELS 313 (611)
Q Consensus 236 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~L~ 313 (611)
++++.++++++ .+|..+ .+++++|+|++|+++..-+..|.++++|++|+|++|.+.+.+| ..|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666666666 555544 2456667777766664333456666666666666666654443 24556665554 3444
Q ss_pred CCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCCCEEEccCc-c
Q 047139 314 DNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNSA-S 392 (611)
Q Consensus 314 ~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n-~ 392 (611)
.|++....+. .+.++++|++|++++|.. ....+..+....++..+++.++ +
T Consensus 89 ~N~l~~l~~~-~f~~l~~L~~L~l~~n~l---------------------------~~~~~~~~~~~~~l~~l~l~~~~~ 140 (350)
T 4ay9_X 89 ANNLLYINPE-AFQNLPNLQYLLISNTGI---------------------------KHLPDVHKIHSLQKVLLDIQDNIN 140 (350)
T ss_dssp ETTCCEECTT-SBCCCTTCCEEEEEEECC---------------------------SSCCCCTTCCBSSCEEEEEESCTT
T ss_pred CCcccccCch-hhhhcccccccccccccc---------------------------ccCCchhhcccchhhhhhhccccc
Confidence 4555543232 455555555555555322 2111222222233333444332 2
Q ss_pred cccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcccCCC-Ceeeccc
Q 047139 393 ISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISF-NSINGSI 471 (611)
Q Consensus 393 l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~-n~l~~~~ 471 (611)
+....+..+......++.|++++|+++ ...+..+. .. .++++++++ |.++...
T Consensus 141 i~~l~~~~f~~~~~~l~~L~L~~N~i~-----------------------~i~~~~f~-~~--~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 141 IHTIERNSFVGLSFESVILWLNKNGIQ-----------------------EIHNSAFN-GT--QLDELNLSDNNNLEELP 194 (350)
T ss_dssp CCEECTTSSTTSBSSCEEEECCSSCCC-----------------------EECTTSST-TE--EEEEEECTTCTTCCCCC
T ss_pred cccccccchhhcchhhhhhcccccccc-----------------------CCChhhcc-cc--chhHHhhccCCcccCCC
Confidence 221111122222223444444444444 22221121 11 224455554 4444333
Q ss_pred ccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCC
Q 047139 472 PQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGEN 545 (611)
Q Consensus 472 ~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 545 (611)
+..|..+++|++|++++|+|+.+. .. .+.+|+.|.+.++.-...+| .+.++++|+.++++++
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~~lp---------~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIHSLP---------SY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCCCCC---------SS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred HHHhccCcccchhhcCCCCcCccC---------hh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 345677777777777777766333 21 13456666655554333555 3667777777777654
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=1.4e-17 Score=157.64 Aligned_cols=135 Identities=24% Similarity=0.207 Sum_probs=75.7
Q ss_pred CCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCC
Q 047139 179 SLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN 258 (611)
Q Consensus 179 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 258 (611)
+|++|++++|+ +.+..+..+.++++|++|++++|.+++..|..+..++ +|++|++++|.++...+..|..+++
T Consensus 33 ~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~------~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 33 TITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR------SLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp TCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS------SCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc------CCCEEECCCCcCCccCHhHccCCCC
Confidence 34444444444 2222223344444444444444444444444444444 5555555555555333344556666
Q ss_pred CcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccc
Q 047139 259 LRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGF 320 (611)
Q Consensus 259 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 320 (611)
|++|++++|++++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 66666666666666666666667777777777777665555666777777777777776543
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=6.6e-18 Score=159.96 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=98.3
Q ss_pred cccCCCCeeecccc-cchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCC
Q 047139 459 DLDISFNSINGSIP-QSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLM 537 (611)
Q Consensus 459 ~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 537 (611)
+|++++|.+++..+ ..|..+++|++|++++|+++.+ .+..+..+++|++|+|++|++++..+..|..+++|
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI--------EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE--------CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 44457777776544 3467788888888887776532 23355567788888888888887777778888888
Q ss_pred CEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcCccCCC
Q 047139 538 DSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLLGPIP 601 (611)
Q Consensus 538 ~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~g~iP 601 (611)
++|+|++|++++..|..+.. +++|++|++++|++++..|..|..+++|++|++++|++.+..+
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFIG-LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CEEECTTSCCCCBCTTSSTT-CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CEEECCCCcCCeECHhHcCC-CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88888888888665666554 7888888888888887777788888888888888888776554
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.6e-17 Score=157.33 Aligned_cols=134 Identities=23% Similarity=0.279 Sum_probs=88.3
Q ss_pred CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCC
Q 047139 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS 233 (611)
Q Consensus 154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~ 233 (611)
+++++|++++|.+++..+..|..+++|++|++++|+ +.+..|..|.++++|++|++++|.++...+..+..++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~------ 104 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF------ 104 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC------
Confidence 456666666666665555566666666666666666 4444556666666666666666666655555555555
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN 294 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 294 (611)
+|++|++++|++++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6777777777776666666777777777777777777655556667777777777777665
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=4.6e-17 Score=155.23 Aligned_cols=136 Identities=29% Similarity=0.326 Sum_probs=80.1
Q ss_pred CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCC
Q 047139 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS 233 (611)
Q Consensus 154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~ 233 (611)
++|++|++++|.+++..|..|.++++|++|++++|++ ....+..+.++++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~----------------------------- 89 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQ----------------------------- 89 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTT-----------------------------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCC-----------------------------
Confidence 5566666666666655555566666666666666652 2222233344444
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 313 (611)
|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 90 -L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 90 -LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp -CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred -cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 555555555554444444555666666666666666 556666666677777777776665555556667777777777
Q ss_pred CCcccccc
Q 047139 314 DNQWEGFI 321 (611)
Q Consensus 314 ~n~l~~~~ 321 (611)
+|.+.+..
T Consensus 168 ~N~~~c~c 175 (229)
T 3e6j_A 168 GNPWDCEC 175 (229)
T ss_dssp TSCBCTTB
T ss_pred CCCccCCc
Confidence 77766543
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=7.8e-18 Score=166.76 Aligned_cols=171 Identities=26% Similarity=0.306 Sum_probs=143.4
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139 150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC 229 (611)
Q Consensus 150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~ 229 (611)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|++ .+ ++. +.++++|++|++++|.+++. ..+..++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l-~~-~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~-- 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKL-TD-IKP-LANLKNLGWLFLDENKVKDL--SSLKDLK-- 112 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCC-CC-CGG-GTTCTTCCEEECCSSCCCCG--GGGTTCT--
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCcc-CC-Ccc-cccCCCCCEEECCCCcCCCC--hhhccCC--
Confidence 5678999999999999984 44 488999999999999994 44 343 89999999999999999863 2366665
Q ss_pred CCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCE
Q 047139 230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309 (611)
Q Consensus 230 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 309 (611)
+|++|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++
T Consensus 113 ----~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 113 ----KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp ----TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred ----CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 999999999999853 5688899999999999999865 568899999999999999986544 889999999
Q ss_pred EEccCCccccccChhhhcCCCCCCEEEcCccCC
Q 047139 310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSN 342 (611)
Q Consensus 310 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~ 342 (611)
|++++|.+++. + .+..+++|+.|++++|..
T Consensus 183 L~L~~N~i~~l-~--~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 183 LYLSKNHISDL-R--ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EECCSSCCCBC-G--GGTTCTTCSEEEEEEEEE
T ss_pred EECCCCcCCCC-h--hhccCCCCCEEECcCCcc
Confidence 99999999863 3 478889999999988543
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.5e-17 Score=180.47 Aligned_cols=174 Identities=28% Similarity=0.340 Sum_probs=137.2
Q ss_pred ccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccc
Q 047139 116 LLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQL 195 (611)
Q Consensus 116 l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 195 (611)
+..+++|+.|++++|.++ .+| .+..+++|++|+|++|.+.+..| +..+++|++|+|++|.+ .+ +
T Consensus 39 ~~~L~~L~~L~l~~n~i~-----------~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-~~-l 102 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-----------SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI-KD-L 102 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-----------CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC-CC-C
T ss_pred hhcCCCCCEEECcCCCCC-----------CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC-CC-C
Confidence 456777888887777664 233 47888999999999998885544 88889999999999984 33 3
Q ss_pred cccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139 196 SRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP 275 (611)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 275 (611)
..+..+++|++|++++|.+.+. ..+..++ +|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 103 -~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~------~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 103 -SSLKDLKKLKSLSLEHNGISDI--NGLVHLP------QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp -TTSTTCTTCCEEECTTSCCCCC--GGGGGCT------TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred -hhhccCCCCCEEEecCCCCCCC--ccccCCC------ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 3688889999999999988864 3455555 899999999988854 677888899999999998886655
Q ss_pred CccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccc
Q 047139 276 SLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGF 320 (611)
Q Consensus 276 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 320 (611)
+..+++|+.|+|++|.+++. +.+..+++|+.|+|++|.+.+.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88888999999999988853 3588888999999999888763
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.1e-17 Score=171.28 Aligned_cols=158 Identities=26% Similarity=0.140 Sum_probs=88.4
Q ss_pred CCCEEEccCCCCCCCCCccCC-CCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCC
Q 047139 155 NLLSLDLSSNDLQGDIPDGFS-SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSS 233 (611)
Q Consensus 155 ~L~~L~L~~n~~~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~ 233 (611)
.+++|+|++|++++..+..+. ++++|++|++++|+ +.+..+..|.++++|++|++++|.+++..+..+..++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------ 112 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ------ 112 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc------
Confidence 355566666666554444454 55666666666665 3333344555566666666666665555555555554
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCc---cCcccCceEEecCCccccCCCcCCCCCCC--CC
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSL---GNLTFLEELYLTSNQMNGKFPESFGQLSA--IR 308 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~ 308 (611)
+|++|+|++|++++..|..|..+++|++|+|++|++++..+..+ ..+++|++|+|++|.+++..+..+..++. ++
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence 66666666666665555666666666666666666653222222 34666666666666666433344444544 36
Q ss_pred EEEccCCcccc
Q 047139 309 VLELSDNQWEG 319 (611)
Q Consensus 309 ~L~L~~n~l~~ 319 (611)
.|+|++|.+..
T Consensus 193 ~l~l~~N~~~C 203 (361)
T 2xot_A 193 GLYLHNNPLEC 203 (361)
T ss_dssp TEECCSSCEEC
T ss_pred eEEecCCCccC
Confidence 66777766654
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1e-17 Score=155.88 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=81.1
Q ss_pred cCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccC
Q 047139 151 FNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECI 230 (611)
Q Consensus 151 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~ 230 (611)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+ . .+..+.++++|++|++++|.+++..+..++.++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--- 112 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-T--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT--- 112 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-S--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT---
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-C--cchhhhcCCCCCEEEeECCccCcccChhhcCCC---
Confidence 44455555555555555 334 355555555555555542 1 223455555555555555555554444444444
Q ss_pred CCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEE
Q 047139 231 NSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL 310 (611)
Q Consensus 231 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 310 (611)
+|++|++++|++++..|..+..+++|++|++++|...+.+| .+..+++|++|++++|.+++ ++ .+..+++|++|
T Consensus 113 ---~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 113 ---SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp ---TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred ---CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 55555555555555555555555566666666665222333 35555666666666666553 22 45555666666
Q ss_pred EccCCccc
Q 047139 311 ELSDNQWE 318 (611)
Q Consensus 311 ~L~~n~l~ 318 (611)
++++|++.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 66666543
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=7.1e-17 Score=165.21 Aligned_cols=173 Identities=26% Similarity=0.298 Sum_probs=146.3
Q ss_pred CEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCC-CCCCCCEEEcccccCCCccchhhhcCcccCCCCCC
Q 047139 157 LSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLG-TLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235 (611)
Q Consensus 157 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L 235 (611)
++++++++.++ .+|..+. ..+++|+|++|+ +++..+..+. ++++|++|++++|.+++..+..+..++ +|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~------~L 90 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP------NL 90 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT------TC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCC------CC
Confidence 67888888888 5776554 468999999999 5665666676 999999999999999998888888887 99
Q ss_pred cEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCC---CCCCCCCEEEc
Q 047139 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESF---GQLSAIRVLEL 312 (611)
Q Consensus 236 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L 312 (611)
++|+|++|++++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|.+++..+..+ ..+++|+.|+|
T Consensus 91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 999999999998878889999999999999999998888899999999999999999996444444 57899999999
Q ss_pred cCCccccccChhhhcCCCC--CCEEEcCcc
Q 047139 313 SDNQWEGFITDAHLRNLTS--LEELSLIKT 340 (611)
Q Consensus 313 ~~n~l~~~~~~~~l~~l~~--L~~L~l~~~ 340 (611)
++|++.+ ++...+..++. ++.|++.+|
T Consensus 171 ~~N~l~~-l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 171 SSNKLKK-LPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCC-CCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCCCCc-cCHHHhhhccHhhcceEEecCC
Confidence 9999986 55557777776 377888884
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=9.7e-17 Score=149.24 Aligned_cols=154 Identities=22% Similarity=0.358 Sum_probs=129.6
Q ss_pred cCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCccccc
Q 047139 117 LQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLS 196 (611)
Q Consensus 117 ~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~ 196 (611)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ . +..+..+++|++|++++|. +.+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~-----------~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~-l~~~~~ 105 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-----------DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKD-VTSDKI 105 (197)
T ss_dssp HHHHTCCEEEEESSCCS-----------CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTT-CBGGGS
T ss_pred hhcCCccEEeccCCCcc-----------ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCc-cCcccC
Confidence 56677777777766554 455 6899999999999999776 3 3479999999999999999 676778
Q ss_pred ccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCC-CCccCCcccCCCCCCcEEEccCCcccccCCC
Q 047139 197 RNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQ-LTGNLPISLGYLKNLRYLELWYNSFLGSIPP 275 (611)
Q Consensus 197 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 275 (611)
..++++++|++|++++|.+++..+..+..++ +|++|++++|. ++ .+| .+..+++|++|++++|++++ ++
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~------~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~- 175 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLP------KVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR- 175 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCS------SCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCC------CCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-
Confidence 8999999999999999999998888898887 99999999998 55 555 68999999999999999985 44
Q ss_pred CccCcccCceEEecCCcccc
Q 047139 276 SLGNLTFLEELYLTSNQMNG 295 (611)
Q Consensus 276 ~l~~l~~L~~L~L~~n~l~~ 295 (611)
.+..+++|++|++++|++.+
T Consensus 176 ~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TGGGCSSCCEEEECBC----
T ss_pred HhccCCCCCEEEeeCcccCC
Confidence 68899999999999999764
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=3.1e-17 Score=178.06 Aligned_cols=171 Identities=26% Similarity=0.298 Sum_probs=146.9
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCccc
Q 047139 150 LFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSEC 229 (611)
Q Consensus 150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~ 229 (611)
+..+++|+.|++++|.+. .+| .+..+++|++|+|++|. +.+..+ +.++++|++|++++|.+.+. ..+..++
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-- 109 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLK-- 109 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCT--
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCC--hhhccCC--
Confidence 577899999999999998 445 58999999999999999 454433 88999999999999999863 2455555
Q ss_pred CCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCE
Q 047139 230 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRV 309 (611)
Q Consensus 230 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 309 (611)
+|++|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|++|+|++|.+.+..| +..+++|+.
T Consensus 110 ----~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 110 ----KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp ----TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred ----CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 999999999999853 5688999999999999999865 568999999999999999997655 899999999
Q ss_pred EEccCCccccccChhhhcCCCCCCEEEcCccCC
Q 047139 310 LELSDNQWEGFITDAHLRNLTSLEELSLIKTSN 342 (611)
Q Consensus 310 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~ 342 (611)
|+|++|.+.+. + .+..+++|+.|++++|..
T Consensus 180 L~Ls~N~i~~l-~--~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 180 LYLSKNHISDL-R--ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EECCSSCCCBC-G--GGTTCTTCSEEECCSEEE
T ss_pred EECcCCCCCCC-h--HHccCCCCCEEEccCCcC
Confidence 99999999874 3 589999999999999544
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=3.8e-19 Score=191.95 Aligned_cols=108 Identities=24% Similarity=0.378 Sum_probs=74.2
Q ss_pred CCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcC
Q 047139 480 QLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESM 559 (611)
Q Consensus 480 ~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l 559 (611)
.|+.|++++|.++ .+|. ++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+.. +
T Consensus 442 ~L~~L~Ls~n~l~---------~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~-l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLT---------VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVAN-L 507 (567)
T ss_dssp TCSEEECTTSCCS---------SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTT-C
T ss_pred CceEEEecCCCCC---------CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCC-C
Confidence 4667777776655 2444 556777777777777777 667777777777777777777774 56 4544 7
Q ss_pred CCCcEEECcCCcCcccC-CccccCCCCCCEeeccCCcCccCCC
Q 047139 560 PSLSILRLRSNHFNGTI-PSELCKLSALHILDLSHNNLLGPIP 601 (611)
Q Consensus 560 ~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~g~iP 601 (611)
++|++|++++|++++.. |..+..+++|++|++++|++++.+|
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 77777777777777665 7777777777777777777776655
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.3e-19 Score=195.49 Aligned_cols=197 Identities=18% Similarity=0.199 Sum_probs=139.9
Q ss_pred cCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCC-------------CCCCCCccCCCCCCCCEE
Q 047139 117 LQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSND-------------LQGDIPDGFSSLNSLQLL 183 (611)
Q Consensus 117 ~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------~~~~~p~~l~~l~~L~~L 183 (611)
...++|+.|++++|+++ .+|..++++++|+.|++++|. +.+.+|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-----------~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-----------VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHH-----------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-----------hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccC
Confidence 45566666666655443 678888889999999887664 456677777888888888
Q ss_pred E-ccCCCCCcccccc------cCCC--CCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccC
Q 047139 184 D-LSGNSFLEGQLSR------NLGT--LCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLG 254 (611)
Q Consensus 184 ~-Ls~n~~~~~~~~~------~l~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 254 (611)
+ ++.|.+ . .++. .+.. ...|++|++++|.+++ +|. ++.++ +|+.|++++|.++ .+|..++
T Consensus 415 ~~l~~n~~-~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~------~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 415 DPMRAAYL-D-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLL------LVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp CGGGHHHH-H-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGT------TCCEEECCSSCCC-CCCGGGG
T ss_pred cchhhccc-c-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccc------cCcEeecCccccc-ccchhhh
Confidence 7 555431 1 0110 0100 1247888888888876 454 66666 8888888888888 7788888
Q ss_pred CCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCC-CcCCCCCCCCCEEEccCCccccccCh--hhhcCCCC
Q 047139 255 YLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKF-PESFGQLSAIRVLELSDNQWEGFITD--AHLRNLTS 331 (611)
Q Consensus 255 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~--~~l~~l~~ 331 (611)
.+++|++|++++|.+++ +| .++.+++|++|++++|.+++.. |..++.+++|+.|+|++|.+++..+. ..+..+++
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 88888888888888885 56 6888888888888888888765 77888888888888888888775442 23445777
Q ss_pred CCEEEc
Q 047139 332 LEELSL 337 (611)
Q Consensus 332 L~~L~l 337 (611)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 777753
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.2e-16 Score=155.57 Aligned_cols=152 Identities=25% Similarity=0.320 Sum_probs=115.0
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcc
Q 047139 149 WLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE 228 (611)
Q Consensus 149 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 228 (611)
.+..+++|++|++++|.++ .+| .+..+++|++|++++|++ .+ ++. +.++++|++|++++|++++..+ . .. +
T Consensus 36 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i-~~-~~~-l~~l~~L~~L~L~~N~l~~l~~-~-~~-~- 106 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQI-SD-LSP-LKDLTKLEELSVNRNRLKNLNG-I-PS-A- 106 (263)
T ss_dssp CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCC-CC-CGG-GTTCSSCCEEECCSSCCSCCTT-C-CC-S-
T ss_pred chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCcc-CC-Chh-hccCCCCCEEECCCCccCCcCc-c-cc-C-
Confidence 4677888888888888887 455 678888888888888884 43 333 8888888888888888876332 1 11 2
Q ss_pred cCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCC
Q 047139 229 CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIR 308 (611)
Q Consensus 229 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 308 (611)
+|++|++++|++++. ..+..+++|++|++++|++++. | .+..+++|++|++++|.+++. ..+..+++|+
T Consensus 107 -----~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 107 -----CLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp -----SCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred -----cccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence 888888888888753 3577888888888888888754 3 577888888888888888765 5677888888
Q ss_pred EEEccCCccccc
Q 047139 309 VLELSDNQWEGF 320 (611)
Q Consensus 309 ~L~L~~n~l~~~ 320 (611)
.|++++|.+.+.
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 888888887653
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=2.4e-16 Score=145.77 Aligned_cols=132 Identities=24% Similarity=0.287 Sum_probs=79.6
Q ss_pred ceEEccCCcccccCCCCCCCcceeecCcccCCCCeeeccccc-chhccCCCCeEECcCCCCCCCCCCcccccCcccccCc
Q 047139 432 GSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQ-SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSL 510 (611)
Q Consensus 432 ~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l 510 (611)
+.+++++|.++ .+|..+.. .+++|++++|.+++..+. .|..+++|++|++++|+++ +..|..+..+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~----~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL----HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT--------GIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT----TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC--------CBCTTTTTTC
T ss_pred CEEEcCCCCcC-cCccCCCC----CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC--------CcCHhHcCCc
Confidence 56777777764 34433221 224444477776654443 3666677777766666544 2334555556
Q ss_pred CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCC
Q 047139 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIP 577 (611)
Q Consensus 511 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p 577 (611)
++|++|+|++|++++..|..|..+++|++|++++|++++..|..+.. +++|++|++++|++++..+
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECTTCCBCCSGG
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc-CCCCCEEEeCCCCccCcCc
Confidence 66777777777776666666666667777777777766655655544 6667777777776665544
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=9.1e-16 Score=149.43 Aligned_cols=159 Identities=23% Similarity=0.292 Sum_probs=131.3
Q ss_pred ccceeeeCccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEc
Q 047139 106 HELRGKISPSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDL 185 (611)
Q Consensus 106 ~~l~~~~~~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L 185 (611)
+.+.+.. .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++. |. ++++++|++|++
T Consensus 29 ~~i~~~~--~~~~l~~L~~L~l~~n~i~-----------~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 29 QSVTDLV--SQKELSGVQNFNGDNSNIQ-----------SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSV 92 (263)
T ss_dssp SCTTSEE--CHHHHTTCSEEECTTSCCC-----------CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEEC
T ss_pred CCccccc--chhhcCcCcEEECcCCCcc-----------cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEEC
Confidence 4444433 5778889999988888775 345 688999999999999999955 44 999999999999
Q ss_pred cCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEcc
Q 047139 186 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW 265 (611)
Q Consensus 186 s~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 265 (611)
++|++ ++ +|. +.. ++|++|++++|.+++. ..+..++ +|++|++++|++++. + .+..+++|++|+++
T Consensus 93 ~~N~l-~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~------~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 93 NRNRL-KN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLK------NLEILSIRNNKLKSI-V-MLGFLSKLEVLDLH 158 (263)
T ss_dssp CSSCC-SC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCT------TCCEEECTTSCCCBC-G-GGGGCTTCCEEECT
T ss_pred CCCcc-CC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcc------cccEEECCCCcCCCC-h-HHccCCCCCEEECC
Confidence 99995 43 444 333 9999999999999874 3466666 999999999999864 4 68899999999999
Q ss_pred CCcccccCCCCccCcccCceEEecCCccccC
Q 047139 266 YNSFLGSIPPSLGNLTFLEELYLTSNQMNGK 296 (611)
Q Consensus 266 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 296 (611)
+|++++. ..+..+++|++|++++|.+.+.
T Consensus 159 ~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 159 GNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999976 6789999999999999999865
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=2.7e-17 Score=183.07 Aligned_cols=145 Identities=22% Similarity=0.320 Sum_probs=104.8
Q ss_pred CCceEEccCCcccccCCCCCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccC
Q 047139 430 FPGSVDLSSNRFEGPIPLWSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGS 509 (611)
Q Consensus 430 ~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~ 509 (611)
.++.|++++|.+. .+|..+..+..| ++|+|++|.++ .+|..|+++++|++|+|++|.|+ .+|..++.
T Consensus 225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L--~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~---------~lp~~~~~ 291 (727)
T 4b8c_D 225 LWHALDLSNLQIF-NISANIFKYDFL--TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT---------SLPAELGS 291 (727)
T ss_dssp CCCEEECTTSCCS-CCCGGGGGCCSC--SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS---------SCCSSGGG
T ss_pred CCcEEECCCCCCC-CCChhhcCCCCC--CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC---------ccChhhcC
Confidence 5677777777766 455444455544 67777999888 78888888999999999888765 67778888
Q ss_pred cCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEe
Q 047139 510 LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL 589 (611)
Q Consensus 510 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 589 (611)
+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+...-..+..+++++|.++|.+|..+ +.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------cee
Confidence 889999999999887 7788888999999999999999888887775411223347888999988887654 455
Q ss_pred eccCC
Q 047139 590 DLSHN 594 (611)
Q Consensus 590 ~ls~n 594 (611)
++++|
T Consensus 365 ~l~~n 369 (727)
T 4b8c_D 365 EINTD 369 (727)
T ss_dssp -----
T ss_pred Eeecc
Confidence 66666
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=2.5e-15 Score=138.91 Aligned_cols=89 Identities=29% Similarity=0.323 Sum_probs=56.0
Q ss_pred CCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEcc
Q 047139 234 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 313 (611)
Q Consensus 234 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 313 (611)
+|++|++++|++++..|..|..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 55555555555555555556666666666666666665555556666666666666666666666666666677777777
Q ss_pred CCccccccC
Q 047139 314 DNQWEGFIT 322 (611)
Q Consensus 314 ~n~l~~~~~ 322 (611)
+|.+.+..+
T Consensus 135 ~N~l~c~c~ 143 (192)
T 1w8a_A 135 SNPFNCNCH 143 (192)
T ss_dssp TCCBCCSGG
T ss_pred CCCccCcCc
Confidence 776665543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.8e-15 Score=136.66 Aligned_cols=132 Identities=23% Similarity=0.207 Sum_probs=84.5
Q ss_pred CCCCEEEccCCCCC-CCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCC
Q 047139 154 TNLLSLDLSSNDLQ-GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINS 232 (611)
Q Consensus 154 ~~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~ 232 (611)
++|++|++++|.++ +.+|..+..+++|++|++++|. +.+. ..+..+++|++|++++|.+++.+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----- 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP----- 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-----
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-----
Confidence 56677777777665 5666666667777777777776 3332 5566677777777777777666666665555
Q ss_pred CCCcEEEccCCCCCccC-CcccCCCCCCcEEEccCCcccccCC---CCccCcccCceEEecCCccc
Q 047139 233 SSLARLELGYNQLTGNL-PISLGYLKNLRYLELWYNSFLGSIP---PSLGNLTFLEELYLTSNQMN 294 (611)
Q Consensus 233 ~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~ 294 (611)
+|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 96 -~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 -NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp -TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred -CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6777777777766431 2566666677777777776664333 24566666666666666654
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=7.9e-16 Score=136.07 Aligned_cols=125 Identities=20% Similarity=0.252 Sum_probs=97.3
Q ss_pred CcccCCCCeee-cccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCC
Q 047139 458 RDLDISFNSIN-GSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSL 536 (611)
Q Consensus 458 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 536 (611)
++|++++|.++ +.+|..+..+++|++|++++|.++++ ..++.+++|++|++++|.+++.+|..+..+++
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----------hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 44555888887 67787788888899998888887643 34556888999999999888778888888888
Q ss_pred CCEEECCCCcCccc-ChhHHhhcCCCCcEEECcCCcCcccCC---ccccCCCCCCEeeccC
Q 047139 537 MDSLDLGENQLSGN-IPAWIGESMPSLSILRLRSNHFNGTIP---SELCKLSALHILDLSH 593 (611)
Q Consensus 537 L~~L~Ls~N~l~~~-ip~~l~~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~ls~ 593 (611)
|++|++++|++++. .|..+.. +++|++|++++|++++..+ ..+..+++|++||+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKK-LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGG-CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCcCCChHHHHHHhh-CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999988852 2355554 8889999999998886655 4678888888888864
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2e-15 Score=136.39 Aligned_cols=138 Identities=25% Similarity=0.194 Sum_probs=114.6
Q ss_pred CCCCCEEECCCCCCCeEEccCCcCc-cCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccc
Q 047139 119 LKDLEYLDLSLNNFKVLDLSNNGFN-STLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSR 197 (611)
Q Consensus 119 l~~L~~L~ls~n~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~ 197 (611)
.++|++|++++| .++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|+ +.+.+|.
T Consensus 23 ~~~L~~L~l~~n----------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNC----------KSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR-IFGGLDM 89 (168)
T ss_dssp TTSCSEEECCSC----------BCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCC-CCSCCCH
T ss_pred cccCCEEECCCC----------CCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCc-CchHHHH
Confidence 355666666555 445 67888899999999999999999865 789999999999999999 5666788
Q ss_pred cCCCCCCCCEEEcccccCCCcc-chhhhcCcccCCCCCCcEEEccCCCCCccCC---cccCCCCCCcEEEccCCcccccC
Q 047139 198 NLGTLCNLQTLKLSLNQFSGEV-SDFIDGLSECINSSSLARLELGYNQLTGNLP---ISLGYLKNLRYLELWYNSFLGSI 273 (611)
Q Consensus 198 ~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~ 273 (611)
.+.++++|++|++++|.+++.. +..+..++ +|++|++++|.+++..+ ..+..+++|++|++++|.+. .+
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~ 162 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLE------CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EA 162 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGGGSSCS------CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BC
T ss_pred HHhhCCCCCEEeccCCccCcchhHHHHhcCC------CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hc
Confidence 8888999999999999998753 36677776 99999999999996554 48899999999999999887 55
Q ss_pred CCC
Q 047139 274 PPS 276 (611)
Q Consensus 274 p~~ 276 (611)
|.+
T Consensus 163 ~~~ 165 (168)
T 2ell_A 163 PDS 165 (168)
T ss_dssp CSS
T ss_pred ccc
Confidence 553
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.7e-15 Score=133.90 Aligned_cols=127 Identities=22% Similarity=0.221 Sum_probs=82.2
Q ss_pred CCCCEEEccCCCCC-CCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCC
Q 047139 154 TNLLSLDLSSNDLQ-GDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINS 232 (611)
Q Consensus 154 ~~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~ 232 (611)
++|++|++++|.++ +.+|..+..+++|++|++++|.+ .+. ..++++++|++|++++|.+++.+|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~----- 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP----- 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----
Confidence 56777777777776 56666667777777777777763 332 5566777777777777777766666666555
Q ss_pred CCCcEEEccCCCCCcc-CCcccCCCCCCcEEEccCCcccccCC---CCccCcccCceEEec
Q 047139 233 SSLARLELGYNQLTGN-LPISLGYLKNLRYLELWYNSFLGSIP---PSLGNLTFLEELYLT 289 (611)
Q Consensus 233 ~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~ 289 (611)
+|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 89 -~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 -NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 677777777776642 23556666666666666666664433 245566666666654
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=7.2e-15 Score=135.82 Aligned_cols=127 Identities=24% Similarity=0.329 Sum_probs=69.4
Q ss_pred ceEEccCCcccccCCCC-CCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCc
Q 047139 432 GSVDLSSNRFEGPIPLW-SSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSL 510 (611)
Q Consensus 432 ~~l~ls~n~~~~~~p~~-~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l 510 (611)
+.+++++|.++. +|.. ..++ ++|++++|.++ .+|..|.++++|++|++++|+|+.+.. ..+..+
T Consensus 13 ~~l~~~~~~l~~-ip~~~~~~l-----~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~--------~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIPRDV-----TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSN--------QSFSNM 77 (193)
T ss_dssp TEEECTTSCCSS-CCSCCCTTC-----CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCT--------TTTTTC
T ss_pred CEEEcCCCCCCc-CCCCCCCCC-----CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCH--------hHccCC
Confidence 456666666553 3322 2223 33333666665 455566666666666666665553322 223335
Q ss_pred CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcc
Q 047139 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG 574 (611)
Q Consensus 511 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~ 574 (611)
++|++|+|++|++++..|..|..+++|+.|+|++|+++ .+|...+..+++|+.|++++|++.+
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeec
Confidence 66666666666666555555666666666666666666 3444333336666666666666553
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=1.9e-15 Score=152.52 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=33.0
Q ss_pred CCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccC
Q 047139 256 LKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSD 314 (611)
Q Consensus 256 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 314 (611)
+++|+.+++.+ .++..-+..|.++++|+++++.+|.+....+..|..+.++..+....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 66666666666 55544444566666666666666666555555565555555554443
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=4.3e-14 Score=130.60 Aligned_cols=67 Identities=25% Similarity=0.264 Sum_probs=29.6
Q ss_pred cCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccc
Q 047139 253 LGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 319 (611)
Q Consensus 253 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 319 (611)
|..+++|++|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus 74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 3334444444444444443333344444444444444444443333334444555555555555443
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=2.7e-14 Score=144.06 Aligned_cols=213 Identities=14% Similarity=0.061 Sum_probs=134.2
Q ss_pred CCCCCEEECCCCCCCeEEccCCcCcc---------CC-CccccC--------CCCCCEEEccCCCCCCCCCccCCCCCCC
Q 047139 119 LKDLEYLDLSLNNFKVLDLSNNGFNS---------TL-PHWLFN--------ITNLLSLDLSSNDLQGDIPDGFSSLNSL 180 (611)
Q Consensus 119 l~~L~~L~ls~n~l~~L~L~~n~l~~---------~~-p~~l~~--------l~~L~~L~L~~n~~~~~~p~~l~~l~~L 180 (611)
+++|+.|||++|++.........+.+ .+ +..|.+ +++|+.+++.+ .++..-+.+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 78888888888877622111111111 22 235666 99999999998 8886767789999999
Q ss_pred CEEEccCCCCCcccccccCCCCCCCCEEEcccccC----CCccchhhhcCccc---------------------------
Q 047139 181 QLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQF----SGEVSDFIDGLSEC--------------------------- 229 (611)
Q Consensus 181 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~l~~l~~~--------------------------- 229 (611)
+.+++++|. +....+..|..+.++.++....+.. .......+......
T Consensus 127 ~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 127 KICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred ceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 999999998 4444556777777777776554211 11011111110000
Q ss_pred -----------------CCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCc-eEEecCC
Q 047139 230 -----------------INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLE-ELYLTSN 291 (611)
Q Consensus 230 -----------------~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n 291 (611)
..+++|+.+++++|+++...+..|.++++|+.+++.+| +...-+..|.++++|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 01347777777777777555566777777777777776 5544555677777777 777766
Q ss_pred ccccCCCcCCCCCCCCCEEEccCCccccccChhhhcCCCCCCEEE
Q 047139 292 QMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELS 336 (611)
Q Consensus 292 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 336 (611)
.++...+..|.++++|+.++++.|.+.. ++...|.++++|+.++
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEE
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCc-cchhhhcCCcchhhhc
Confidence 5555555667777777777777777665 3444677777777664
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=7.4e-14 Score=127.21 Aligned_cols=65 Identities=28% Similarity=0.347 Sum_probs=26.2
Q ss_pred CCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCcccc
Q 047139 255 YLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 319 (611)
Q Consensus 255 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 319 (611)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 33333444444443333333333344444444444444443222223444444444444444443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=9.6e-14 Score=126.46 Aligned_cols=133 Identities=26% Similarity=0.284 Sum_probs=101.6
Q ss_pred CCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcccCCCCCC
Q 047139 156 LLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSECINSSSL 235 (611)
Q Consensus 156 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~~~L 235 (611)
.+.+++++++++ .+|..+. ++|++|++++|+ +.+..+..++++++|++|++++|.+++..+..+..++ +|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L 78 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT------KL 78 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT------TC
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC------cc
Confidence 467888888887 5564443 688888888888 4555555678888888888888888877777677776 88
Q ss_pred cEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCC
Q 047139 236 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFP 298 (611)
Q Consensus 236 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 298 (611)
++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 888888888887666677888888888888888885555556778888888888888776443
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=8.2e-14 Score=126.78 Aligned_cols=130 Identities=22% Similarity=0.228 Sum_probs=70.9
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccCCCCC-CCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcc
Q 047139 150 LFNITNLLSLDLSSNDLQGDIPDGFSSLN-SLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE 228 (611)
Q Consensus 150 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 228 (611)
+.++++|++|++++|.++ .+|. +..+. +|++|++++|.+ .+ + ..+.++++|++|++++|.+++..+..+..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l-~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~- 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEI-RK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP- 88 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCC-CE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT-
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCC-Cc-c-cccccCCCCCEEECCCCcccccCcchhhcCC-
Confidence 555667777777777766 3343 33333 777777777763 32 2 4566666666666666666654444445554
Q ss_pred cCCCCCCcEEEccCCCCCccCCc--ccCCCCCCcEEEccCCcccccCCCC----ccCcccCceEEecCCc
Q 047139 229 CINSSSLARLELGYNQLTGNLPI--SLGYLKNLRYLELWYNSFLGSIPPS----LGNLTFLEELYLTSNQ 292 (611)
Q Consensus 229 ~~~~~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~ 292 (611)
+|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|++|++++|.
T Consensus 89 -----~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 -----DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp -----TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred -----CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 5666666666554 3333 4445555555555555554 23332 3344444444444443
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=6.6e-14 Score=127.40 Aligned_cols=125 Identities=20% Similarity=0.253 Sum_probs=84.1
Q ss_pred CcccCCCCeeecccccchhcc-CCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCC
Q 047139 458 RDLDISFNSINGSIPQSVGNL-KQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSL 536 (611)
Q Consensus 458 ~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 536 (611)
++|++++|.++. +|. +..+ ++|++|++++|.++++ +.++.+++|++|++++|++++..+..+..+++
T Consensus 22 ~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~----------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 22 RELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL----------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE----------CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred eEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc----------cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 334446666663 343 3343 3788888877776632 24455778888888888887554444577888
Q ss_pred CCEEECCCCcCcccChh--HHhhcCCCCcEEECcCCcCcccCCcc----ccCCCCCCEeeccCCcCc
Q 047139 537 MDSLDLGENQLSGNIPA--WIGESMPSLSILRLRSNHFNGTIPSE----LCKLSALHILDLSHNNLL 597 (611)
Q Consensus 537 L~~L~Ls~N~l~~~ip~--~l~~~l~~L~~L~ls~n~l~~~~p~~----l~~l~~L~~L~ls~n~l~ 597 (611)
|++|++++|+++ .+|. .+.. +++|++|++++|+++ .+|.. +..+++|++||+++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~-l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLAS-LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGG-CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhc-CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888875 5665 4544 788888888888887 45653 677788888888877654
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=9.7e-16 Score=142.56 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=88.9
Q ss_pred CCceEEccCCcccccCCC------CCCCcceeecCcccCCCCeeecccccchhccCCCCeEECcCCCCCCCCCCcccccC
Q 047139 430 FPGSVDLSSNRFEGPIPL------WSSNLTKLYLRDLDISFNSINGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEI 503 (611)
Q Consensus 430 ~l~~l~ls~n~~~~~~p~------~~~~l~~L~l~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~i 503 (611)
.++.++++.+.+.|.+|. .+..+..+ ++|++++|.+++ +| .+..+++|++|++++|+++ .+
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L--~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~---------~l 85 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKAC--KHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK---------KI 85 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTC--SEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC---------SC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCC--CEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc---------cc
Confidence 455566666666666554 33333333 445557777664 45 6666777777777766654 34
Q ss_pred cccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChh--HHhhcCCCCcEEECcCCcCcccCCcc--
Q 047139 504 PESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA--WIGESMPSLSILRLRSNHFNGTIPSE-- 579 (611)
Q Consensus 504 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~~l~~L~~L~ls~n~l~~~~p~~-- 579 (611)
|..+..+++|++|++++|++++ +| .+..+++|+.|++++|++++ +|. .+.. +++|++|++++|++++.+|..
T Consensus 86 ~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~-l~~L~~L~l~~N~l~~~~~~~~~ 161 (198)
T 1ds9_A 86 ENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAA-LDKLEDLLLAGNPLYNDYKENNA 161 (198)
T ss_dssp SSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTT-TTTCSEEEECSCHHHHHHHTTTT
T ss_pred cchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhc-CCCCCEEEecCCccccccccccc
Confidence 4455555667777777777664 34 46666677777777777663 332 3433 677777777777776655542
Q ss_pred --------ccCCCCCCEeeccCCcCc
Q 047139 580 --------LCKLSALHILDLSHNNLL 597 (611)
Q Consensus 580 --------l~~l~~L~~L~ls~n~l~ 597 (611)
+..+++|++|| +|+++
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred hHHHHHHHHHhCCCcEEEC--CcccC
Confidence 55666777665 44443
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.2e-13 Score=121.98 Aligned_cols=88 Identities=24% Similarity=0.294 Sum_probs=43.8
Q ss_pred CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEee
Q 047139 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILD 590 (611)
Q Consensus 511 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 590 (611)
++|++|+|++|++++..|..|..+++|++|+|++|+|+ .+|...+..+++|++|+|++|++++..+..|..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 34555555555555444455555555555555555555 23333322355555555555555543333455555555555
Q ss_pred ccCCcCccC
Q 047139 591 LSHNNLLGP 599 (611)
Q Consensus 591 ls~n~l~g~ 599 (611)
+++|++...
T Consensus 109 L~~N~~~c~ 117 (170)
T 3g39_A 109 LLNNPWDCA 117 (170)
T ss_dssp CCSSCBCTT
T ss_pred eCCCCCCCC
Confidence 555555433
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=8.5e-16 Score=142.96 Aligned_cols=114 Identities=25% Similarity=0.253 Sum_probs=69.9
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCcc
Q 047139 149 WLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLSE 228 (611)
Q Consensus 149 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 228 (611)
.+..+++|++|++++|.+++ +| .+.++++|++|++++|.+ . .+|..+..+++|++|++++|.+++. | .+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l-~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~- 115 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI-K-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV- 115 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE-C-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH-
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc-c-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC-
Confidence 67777777777777777764 55 667777777777777763 2 4555555566677777777766652 2 344444
Q ss_pred cCCCCCCcEEEccCCCCCccCC-cccCCCCCCcEEEccCCcccccCC
Q 047139 229 CINSSSLARLELGYNQLTGNLP-ISLGYLKNLRYLELWYNSFLGSIP 274 (611)
Q Consensus 229 ~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p 274 (611)
+|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|
T Consensus 116 -----~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 116 -----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp -----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred -----CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 66666666666653221 345555666666666665554443
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=1e-11 Score=127.93 Aligned_cols=248 Identities=11% Similarity=0.037 Sum_probs=154.1
Q ss_pred ccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhcCc
Q 047139 148 HWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDGLS 227 (611)
Q Consensus 148 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 227 (611)
..|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+..+ +...-...|.++++|+.+++..|.++......|. ..
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 355554 6888887765 554555567664 6888888763 3333446677888888888888877766666655 23
Q ss_pred ccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccccCCCcCCCCCCCC
Q 047139 228 ECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMNGKFPESFGQLSAI 307 (611)
Q Consensus 228 ~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 307 (611)
+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++..-...|.+ .+|+.+.+ .+.++......|.++++|
T Consensus 204 ------~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L 273 (401)
T 4fdw_A 204 ------GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPEL 273 (401)
T ss_dssp ------CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTC
T ss_pred ------ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCC
Confidence 7888888744 66556677778888888888765 44344455665 67888888 344554556677788888
Q ss_pred CEEEccCCccc----cccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCCCCC
Q 047139 308 RVLELSDNQWE----GFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTEL 383 (611)
Q Consensus 308 ~~L~L~~n~l~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 383 (611)
+.+++.+|.+. ..++...|.+|++|+.+.+.. .+..-....+..+.+|+.+.+..+ +...-...|.++ +|
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~----~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L 347 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE----SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI 347 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT----TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC----ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence 88888777654 125555778888888887775 233333334445556666666433 343444556666 66
Q ss_pred CEEEccCcccccccchhHHhcCCCCCEEEccCcc
Q 047139 384 TTLVLNSASISDTLPSWFLQLNLTLDELDVGGNH 417 (611)
Q Consensus 384 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~ 417 (611)
+.+++.+|......+..+......++.+++..+.
T Consensus 348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 6666666655433333333322345555555443
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=7.2e-13 Score=120.04 Aligned_cols=86 Identities=22% Similarity=0.274 Sum_probs=43.4
Q ss_pred CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEee
Q 047139 511 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILD 590 (611)
Q Consensus 511 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 590 (611)
++|++|+|++|++++..|..|.++++|++|+|++|+|+ .+|...+..+++|++|+|++|++++..+..|..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 34555555555555444555555555555555555555 23333322355555555555555533333355555555555
Q ss_pred ccCCcCc
Q 047139 591 LSHNNLL 597 (611)
Q Consensus 591 ls~n~l~ 597 (611)
+++|++.
T Consensus 112 L~~N~~~ 118 (174)
T 2r9u_A 112 LYNNPWD 118 (174)
T ss_dssp CCSSCBC
T ss_pred eCCCCcc
Confidence 5555554
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.38 E-value=4.1e-11 Score=123.51 Aligned_cols=228 Identities=13% Similarity=0.078 Sum_probs=173.9
Q ss_pred CCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccchhhhc
Q 047139 146 LPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVSDFIDG 225 (611)
Q Consensus 146 ~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 225 (611)
-...|.+ .+|+.+.+.. .+...-+.+|.+|++|+.+++.+|.+ . .++.......+|+.+.+..+ +.......|..
T Consensus 150 ~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l-~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~ 224 (401)
T 4fdw_A 150 GDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI-T-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLK 224 (401)
T ss_dssp CTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC-S-EECTTTTTTCCCSEEECCTT-CCEECTTTTTT
T ss_pred CHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc-e-EechhhEeecccCEEEeCCc-hheehhhHhhC
Confidence 3445666 4699999986 67656677899999999999999884 3 35544444689999999844 77677777777
Q ss_pred CcccCCCCCCcEEEccCCCCCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCCccc-----cCCCcC
Q 047139 226 LSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSNQMN-----GKFPES 300 (611)
Q Consensus 226 l~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~~~~ 300 (611)
+. +|+.+++..+ ++..-..+|.+ .+|+.+.+. +.++..-+..|.++++|+.+++.++.+. ...+..
T Consensus 225 ~~------~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 225 TS------QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp CT------TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred CC------CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 76 9999999875 55455566666 789999995 4466556778999999999999988765 345567
Q ss_pred CCCCCCCCEEEccCCccccccChhhhcCCCCCCEEEcCccCCCCceeeccCCCCCCcceeEEEecccccCcccchhccCC
Q 047139 301 FGQLSAIRVLELSDNQWEGFITDAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQ 380 (611)
Q Consensus 301 l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 380 (611)
|.++++|+.+.+.++ +.. ++...|.+|++|+.+.+.. .+..-....+..+ +|+.+.+.++.........|.++
T Consensus 296 F~~c~~L~~l~l~~~-i~~-I~~~aF~~c~~L~~l~lp~----~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 296 LEGCPKLARFEIPES-IRI-LGQGLLGGNRKVTQLTIPA----NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp TTTCTTCCEECCCTT-CCE-ECTTTTTTCCSCCEEEECT----TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred hhCCccCCeEEeCCc-eEE-EhhhhhcCCCCccEEEECc----cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 899999999999954 543 5666899999999999976 3444444556667 99999999998777667777777
Q ss_pred C-CCCEEEccCcccc
Q 047139 381 T-ELTTLVLNSASIS 394 (611)
Q Consensus 381 ~-~L~~L~l~~n~l~ 394 (611)
+ +++.|.+..+.+.
T Consensus 369 ~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 369 PDDITVIRVPAESVE 383 (401)
T ss_dssp CTTCCEEEECGGGHH
T ss_pred CCCccEEEeCHHHHH
Confidence 4 7889998877643
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=9.2e-12 Score=112.31 Aligned_cols=62 Identities=31% Similarity=0.308 Sum_probs=28.1
Q ss_pred CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCC
Q 047139 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFS 216 (611)
Q Consensus 154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 216 (611)
++|++|++++|++++..|..|.++++|++|++++|+ +++..+..+.++++|++|++++|+++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCccC
Confidence 445555555555554444445555555555555554 23222223334444444444444443
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.32 E-value=5.7e-11 Score=122.79 Aligned_cols=102 Identities=10% Similarity=0.127 Sum_probs=64.8
Q ss_pred chhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcccChh
Q 047139 474 SVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA 553 (611)
Q Consensus 474 ~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 553 (611)
.|..+.+|+.+.+.++ +..++...|.+ +++|+.+++.++ ++.....+|.+|++|+.+++..+ ++ .|+.
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~--------c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~ 359 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFES--------CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGA 359 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTT--------CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECT
T ss_pred cccccccccccccccc-cceechhhhcC--------CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehH
Confidence 4566777777777543 44444444443 777777777644 55444567788888888888766 55 5666
Q ss_pred HHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEe
Q 047139 554 WIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL 589 (611)
Q Consensus 554 ~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 589 (611)
..+.++++|+.+++..+ ++ .+...|.++++|+.+
T Consensus 360 ~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 360 NAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 56666788888887654 22 334567777776654
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.31 E-value=1.5e-10 Score=119.55 Aligned_cols=82 Identities=10% Similarity=0.162 Sum_probs=49.8
Q ss_pred cccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCccc
Q 047139 471 IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGN 550 (611)
Q Consensus 471 ~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 550 (611)
-..+|.+|++|+.+++..+ ++.++...|.+ +++|+.+++..+ ++.....+|.+|++|+.+++..+ ++ .
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~--------c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~ 379 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRG--------CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-Q 379 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTT--------CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-G
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccC--------CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-E
Confidence 3455677777777777543 55555444444 777888877766 55445567788888888877654 22 2
Q ss_pred ChhHHhhcCCCCcEE
Q 047139 551 IPAWIGESMPSLSIL 565 (611)
Q Consensus 551 ip~~l~~~l~~L~~L 565 (611)
+... +.++++|+.+
T Consensus 380 ~~~~-F~~c~~L~~I 393 (394)
T 4fs7_A 380 YRYD-FEDTTKFKWI 393 (394)
T ss_dssp GGGG-BCTTCEEEEE
T ss_pred hhhe-ecCCCCCcEE
Confidence 3333 2336666543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.6e-11 Score=111.04 Aligned_cols=36 Identities=31% Similarity=0.307 Sum_probs=17.4
Q ss_pred CCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCC
Q 047139 154 TNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNS 189 (611)
Q Consensus 154 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 189 (611)
++|++|++++|++++..|..|+++++|++|+|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 68 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK 68 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC
Confidence 444555555555544444444444444444444444
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=1.7e-12 Score=132.53 Aligned_cols=136 Identities=20% Similarity=0.252 Sum_probs=78.4
Q ss_pred CcccCCCCeeecccccch-----hccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----Cc
Q 047139 458 RDLDISFNSINGSIPQSV-----GNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IP 528 (611)
Q Consensus 458 ~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p 528 (611)
++|+|++|.++......+ ...++|++|+|++|.+++.+. ..++..+..+++|++|+|++|.+++. ++
T Consensus 129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV----AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHH----HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHH----HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 334446666554333333 235677888887777653211 12344455677788888888887643 34
Q ss_pred ccccCCCCCCEEECCCCcCcccChhHHhh---cCCCCcEEECcCCcCcccCCccccCC---C--CCCEee--ccCCcCc
Q 047139 529 PSLKNCSLMDSLDLGENQLSGNIPAWIGE---SMPSLSILRLRSNHFNGTIPSELCKL---S--ALHILD--LSHNNLL 597 (611)
Q Consensus 529 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~---~l~~L~~L~ls~n~l~~~~p~~l~~l---~--~L~~L~--ls~n~l~ 597 (611)
..+...++|+.|+|++|.|++.....+.. ..++|++|+|++|+|+......+..+ . .|+.+. +..|.++
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 56667778888888888887543332221 25788888888888876544444332 1 166666 6666554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=6.5e-13 Score=135.63 Aligned_cols=169 Identities=13% Similarity=0.110 Sum_probs=103.5
Q ss_pred CCCCEEEccCcccccccchhHHhcCCCCCEEEccCcccccccCcccccCCCceEEccCCcccccCCCCCCCcceeecCcc
Q 047139 381 TELTTLVLNSASISDTLPSWFLQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPIPLWSSNLTKLYLRDL 460 (611)
Q Consensus 381 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~ls~n~~~~~~p~~~~~l~~L~l~~L 460 (611)
++|++|++++|.+++.....+....++|+.|++++|.++......+... +...... |++|
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~---------------L~~~~~~-----L~~L 160 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL---------------LLHDQCQ-----ITTL 160 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH---------------HHSTTCC-----CCEE
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH---------------HHhcCCc-----ccee
Confidence 5677777777776655444444444566777777776654322222100 0000112 2444
Q ss_pred cCCCCeeec----ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----Cccccc
Q 047139 461 DISFNSING----SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IPPSLK 532 (611)
Q Consensus 461 ~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~ 532 (611)
+|++|.++. .++..+..+++|++|+|++|.+++.+.. .++..+...++|++|+|++|.+++. ++..+.
T Consensus 161 ~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~----~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~ 236 (372)
T 3un9_A 161 RLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE----LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR 236 (372)
T ss_dssp ECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH----HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH
T ss_pred eCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH----HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH
Confidence 557777654 2445557788999999999987642211 3345566678999999999999853 445566
Q ss_pred CCCCCCEEECCCCcCcccChhHHhhcCC--C---CcEEE--CcCCcCcc
Q 047139 533 NCSLMDSLDLGENQLSGNIPAWIGESMP--S---LSILR--LRSNHFNG 574 (611)
Q Consensus 533 ~l~~L~~L~Ls~N~l~~~ip~~l~~~l~--~---L~~L~--ls~n~l~~ 574 (611)
.+++|++|+|++|.|++.....+.. +. . |+.+. +..|.+..
T Consensus 237 ~~~~L~~L~Ls~N~i~~~g~~~L~~-~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 237 EHPSLELLHLYFNELSSEGRQVLRD-LGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HCSSCCEEECTTSSCCHHHHHHHHH-CC------CEEECCCC----CHH
T ss_pred hCCCCCEEeccCCCCCHHHHHHHHH-HhcCCCccchhhHhhhcCCccCH
Confidence 7899999999999998766666654 31 2 77777 77776654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=8.2e-11 Score=119.39 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=74.6
Q ss_pred ccCCCC-eeecccccchhccCCCCeEECcC-CCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCC
Q 047139 460 LDISFN-SINGSIPQSVGNLKQLLTLVISN-NNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLM 537 (611)
Q Consensus 460 L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~-n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 537 (611)
++.+++ .++ .+|. +..+++|++|+|++ |.++ +..|..++.+++|+.|+|++|+|++..|..|.++++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 82 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ--------HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC--------EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC--------CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC
Confidence 445776 676 4677 78888888888875 6654 2333556668888888888888887777778888888
Q ss_pred CEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCccc
Q 047139 538 DSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT 575 (611)
Q Consensus 538 ~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~~ 575 (611)
+.|+|++|+|+ .+|..++..++ |+.|++++|++...
T Consensus 83 ~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 83 SRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCccCC
Confidence 88888888887 45655554344 88888888887743
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.04 E-value=5.7e-08 Score=100.14 Aligned_cols=111 Identities=11% Similarity=0.253 Sum_probs=67.2
Q ss_pred cccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCccc
Q 047139 471 IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGN 550 (611)
Q Consensus 471 ~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 550 (611)
...+|.++++|+.+.+. +.++.+....|.+ +.+|+.++|..+ ++.....+|.+|.+|+.+.+..+ ++ .
T Consensus 280 ~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~--------c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~ 347 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFS-SRITELPESVFAG--------CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-K 347 (394)
T ss_dssp CTTTTTTCTTCCEEECC-TTCCEECTTTTTT--------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-B
T ss_pred cCcccccccccccccCC-CcccccCceeecC--------CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-E
Confidence 34556777788888775 3455455444444 778888888754 44344567888888888888654 55 5
Q ss_pred ChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCCcC
Q 047139 551 IPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 596 (611)
Q Consensus 551 ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l 596 (611)
|....+.++++|+.+++.++.... ..+.....|+.+.+..+.+
T Consensus 348 I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 348 IPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 666666668888888888775442 3455667777777766644
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=7.9e-10 Score=112.10 Aligned_cols=73 Identities=23% Similarity=0.183 Sum_probs=39.0
Q ss_pred CCccccCCCCCCEEEccC-CCCCCCCCccCCCCCCCCEEEccCCCCCcccccccCCCCCCCCEEEcccccCCCccc
Q 047139 146 LPHWLFNITNLLSLDLSS-NDLQGDIPDGFSSLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFSGEVS 220 (611)
Q Consensus 146 ~p~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 220 (611)
+|. +..+++|++|+|++ |.+++..|..|+++++|++|+|++|+ +.+..|..|.++++|++|+|++|++++..+
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 454 55555566666654 55555444555555555555555555 444444445555555555555555544333
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=2.4e-10 Score=115.55 Aligned_cols=192 Identities=14% Similarity=0.164 Sum_probs=90.5
Q ss_pred ccccCCCCCCEEECCCCCCCeEEccCCcCccCCCccccCCCCCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCCCCcc
Q 047139 114 PSLLQLKDLEYLDLSLNNFKVLDLSNNGFNSTLPHWLFNITNLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNSFLEG 193 (611)
Q Consensus 114 ~~l~~l~~L~~L~ls~n~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~ 193 (611)
.++..+++|+.|.+........+++... .+.++..+..+++|+.|++++|.-. .++. + .+++|++|++..+. +..
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~-~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~ 207 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIE-QVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-LPD 207 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCB-CCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-CCH
T ss_pred HhhhhcchhhheeecCcchhhccccccc-ccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-CCh
Confidence 3455677787777765433221111110 1123344555666666666655211 1222 2 25566666665555 222
Q ss_pred cccccCC--CCCCCCEEEcccc--cCCCc-cchhhhcCcccCCCCCCcEEEccCCCCCccCCccc--CCCCCCcEEEccC
Q 047139 194 QLSRNLG--TLCNLQTLKLSLN--QFSGE-VSDFIDGLSECINSSSLARLELGYNQLTGNLPISL--GYLKNLRYLELWY 266 (611)
Q Consensus 194 ~~~~~l~--~l~~L~~L~l~~n--~l~~~-~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~ 266 (611)
.....+. .+++|++|+|+.+ ...+. ....+. ..+ ..+++|++|++.+
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~--------------------------~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR--------------------------PLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG--------------------------GGSCTTTCTTCCEEEEES
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHH--------------------------HHHhcCCCCCcCEEeCCC
Confidence 2222222 4555555555321 11100 000010 111 2356677777766
Q ss_pred CcccccCCCCc---cCcccCceEEecCCccccC----CCcCCCCCCCCCEEEccCCccccccChhhhcC-CCCCCEEEcC
Q 047139 267 NSFLGSIPPSL---GNLTFLEELYLTSNQMNGK----FPESFGQLSAIRVLELSDNQWEGFITDAHLRN-LTSLEELSLI 338 (611)
Q Consensus 267 n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~-l~~L~~L~l~ 338 (611)
|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++..... .+.. + ...++++
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l~~al--g~~~~~~ 338 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQKSL--PMKIDVS 338 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH-HHHHHC--CSEEECC
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH-HHHHHc--CCEEEec
Confidence 66553322222 2456777777777776653 233334567777777777766543222 2222 2 3456666
Q ss_pred c
Q 047139 339 K 339 (611)
Q Consensus 339 ~ 339 (611)
.
T Consensus 339 ~ 339 (362)
T 2ra8_A 339 D 339 (362)
T ss_dssp S
T ss_pred C
Confidence 6
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.87 E-value=2.3e-07 Score=95.51 Aligned_cols=89 Identities=10% Similarity=0.225 Sum_probs=55.7
Q ss_pred ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcc
Q 047139 470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG 549 (611)
Q Consensus 470 ~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 549 (611)
....+|.+|++|+.+++..+ ++.++...|.| +.+|+.+.+..+ ++.....+|.+|++|+.+++.++....
T Consensus 302 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~--------C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~ 371 (394)
T 4gt6_A 302 LPESVFAGCISLKSIDIPEG-ITQILDDAFAG--------CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW 371 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTT--------CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred cCceeecCCCCcCEEEeCCc-ccEehHhHhhC--------CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh
Confidence 34456788888999888754 55556555655 888999998755 554556788999999999998876431
Q ss_pred cChhHHhhcCCCCcEEECcCCcC
Q 047139 550 NIPAWIGESMPSLSILRLRSNHF 572 (611)
Q Consensus 550 ~ip~~l~~~l~~L~~L~ls~n~l 572 (611)
..++ .+..|+.+.+..+.+
T Consensus 372 ---~~~~-~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 372 ---NAIS-TDSGLQNLPVAPGSI 390 (394)
T ss_dssp ---HTCB-CCCCC----------
T ss_pred ---hhhh-ccCCCCEEEeCCCCE
Confidence 2333 377888888776654
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=9.9e-09 Score=103.73 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=72.7
Q ss_pred ccCcccCceEEecCCccccCCCcCCCCCCCCCEEEccCCccccccChhhh--cCCCCCCEEEcCccCCCCceee-----c
Q 047139 277 LGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITDAHL--RNLTSLEELSLIKTSNSSLSFN-----I 349 (611)
Q Consensus 277 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~-----~ 349 (611)
+..+++|+.|++++|.-. .++. + .+++|++|++..+.+...... .+ ..+++|+.|+|+.+.+ ...+. +
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~~~~~-~~~~~~~~~~l 242 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLYVGVE-DYGFDGDMNVF 242 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEECBCG-GGTCCSCGGGT
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEecccc-ccccchhHHHH
Confidence 445566777777665211 2222 2 256777777776665443222 22 2577777777653211 00000 0
Q ss_pred --cCCCCCCcceeEEEecccccCcccchhcc---CCCCCCEEEccCcccccccchhHHh---cCCCCCEEEccCcccccc
Q 047139 350 --SFDWIPPFKLRYLVIRYYQLGPKFPTWLR---NQTELTTLVLNSASISDTLPSWFLQ---LNLTLDELDVGGNHLSGR 421 (611)
Q Consensus 350 --~~~~~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~L~l~~n~l~~~~p~~~~~---~~~~L~~L~ls~n~l~~~ 421 (611)
......+++|+.|++.+|.+....+..+. .+++|++|+++.|.+.+..+..+.. .+++|+.|++++|.++..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 00112345677777766666543333222 4567777777777776644333321 235677777777766543
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.57 E-value=1.2e-05 Score=82.00 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=59.1
Q ss_pred cccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCccc
Q 047139 471 IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGN 550 (611)
Q Consensus 471 ~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 550 (611)
-..+|.++.+|+.+.+..+ +..++...|.+ +++|+.+++.++.++.....+|.+|.+|+.++|..+ ++ .
T Consensus 255 ~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~--------c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~ 323 (379)
T 4h09_A 255 GSFLLQNCTALKTLNFYAK-VKTVPYLLCSG--------CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-T 323 (379)
T ss_dssp CTTTTTTCTTCCEEEECCC-CSEECTTTTTT--------CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-E
T ss_pred Cccccceeehhcccccccc-ceecccccccc--------ccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-E
Confidence 3445666667777766432 33333333333 677777777777666455566777777777777654 44 4
Q ss_pred ChhHHhhcCCCCcEEECcCCcCcccCCccccCC
Q 047139 551 IPAWIGESMPSLSILRLRSNHFNGTIPSELCKL 583 (611)
Q Consensus 551 ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l 583 (611)
|....+.++++|+.+.+..+ ++..-...|.++
T Consensus 324 I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 324 IQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp ECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred EHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 55555555777777776543 443334445444
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.54 E-value=6.5e-06 Score=84.15 Aligned_cols=113 Identities=11% Similarity=0.095 Sum_probs=86.8
Q ss_pred ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcCcc
Q 047139 470 SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG 549 (611)
Q Consensus 470 ~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 549 (611)
....+|.++..|+.+.+..+ ++.+....|.+ +.+|+.+.+..+ +.......|.+|++|+.+.+.++.++
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~--------~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~- 299 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQN--------CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE- 299 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTT--------CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccce--------eehhcccccccc-ceeccccccccccccccccccccccc-
Confidence 44556788899999988764 55444444444 889999999765 55455568999999999999999888
Q ss_pred cChhHHhhcCCCCcEEECcCCcCcccCCccccCCCCCCEeeccCC
Q 047139 550 NIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHN 594 (611)
Q Consensus 550 ~ip~~l~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~n 594 (611)
.|+...+.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+
T Consensus 300 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 300 TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 677777777999999999765 66455668889999999988654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=1e-08 Score=93.43 Aligned_cols=123 Identities=20% Similarity=0.164 Sum_probs=79.1
Q ss_pred cccchhccCCCCeEECcCC-CCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----CcccccCCCCCCEEECCCC
Q 047139 471 IPQSVGNLKQLLTLVISNN-NLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IPPSLKNCSLMDSLDLGEN 545 (611)
Q Consensus 471 ~~~~l~~l~~L~~L~L~~n-~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N 545 (611)
+...+...+.|++|+|++| .+.+-+.. .+...+...++|++|+|++|.+... +...+...++|++|+|++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~----~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLK----ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHH----HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHH----HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3445566777888888877 66531111 2334455567788888888887643 3445566677888888888
Q ss_pred cCcccChhHHhh---cCCCCcEEEC--cCCcCccc----CCccccCCCCCCEeeccCCcCc
Q 047139 546 QLSGNIPAWIGE---SMPSLSILRL--RSNHFNGT----IPSELCKLSALHILDLSHNNLL 597 (611)
Q Consensus 546 ~l~~~ip~~l~~---~l~~L~~L~l--s~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~ 597 (611)
.|++.....+.. ..++|++|++ ++|.+... +.+.+...++|++|++++|.+.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 887543332322 2567888888 77887754 3344555577888888888764
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=3.3e-08 Score=94.72 Aligned_cols=65 Identities=23% Similarity=0.307 Sum_probs=29.2
Q ss_pred cCCCCEEECcCCcccc--cCcccccCCCCCCEEECCCCcCcccChhHHhhcCC--CCcEEECcCCcCcccCC
Q 047139 510 LLTIRFLVLSNNHLSG--EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMP--SLSILRLRSNHFNGTIP 577 (611)
Q Consensus 510 l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~--~L~~L~ls~n~l~~~~p 577 (611)
+++|++|+|++|++++ .+|..+..+++|+.|+|++|+|++. ..+.. +. +|++|++++|++.+.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccCCcceEEccCCcCccccC
Confidence 4445555555555544 2333444455555555555555432 11111 22 45555555555554443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=1.8e-07 Score=89.63 Aligned_cols=99 Identities=26% Similarity=0.372 Sum_probs=73.3
Q ss_pred ccCCCCee---ecccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCcccccCcccccCCC-
Q 047139 460 LDISFNSI---NGSIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCS- 535 (611)
Q Consensus 460 L~Ls~n~l---~~~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~- 535 (611)
++++.|.. .+.++....++++|+.|+|++|+|+.+. .+|..+..+++|+.|+|++|++++. ..+..+.
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~------~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~ 219 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLD------DMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG 219 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCG------GGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCc------cchhHHhhCCCCCEEECCCCccCCc--hhhhhccc
Confidence 45577743 3233333367899999999999987554 4666777899999999999999965 3344444
Q ss_pred -CCCEEECCCCcCcccChh------HHhhcCCCCcEEE
Q 047139 536 -LMDSLDLGENQLSGNIPA------WIGESMPSLSILR 566 (611)
Q Consensus 536 -~L~~L~Ls~N~l~~~ip~------~l~~~l~~L~~L~ 566 (611)
+|++|+|++|.+.+.+|. .+...+|+|+.||
T Consensus 220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 999999999999987762 2344589999886
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=5.2e-08 Score=88.77 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=79.9
Q ss_pred CcccCCCC-eeecc----cccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----Cc
Q 047139 458 RDLDISFN-SINGS----IPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IP 528 (611)
Q Consensus 458 ~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p 528 (611)
++|+|++| .+... +...+...++|++|+|++|+|.+-+.. .+.+.+...++|++|+|++|.+.+. +.
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~----~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF----ALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH----HHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH----HHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 44444776 66532 344556678899999999987642211 2344455578899999999999864 46
Q ss_pred ccccCCCCCCEEEC--CCCcCcccChhHHhh---cCCCCcEEECcCCcCc
Q 047139 529 PSLKNCSLMDSLDL--GENQLSGNIPAWIGE---SMPSLSILRLRSNHFN 573 (611)
Q Consensus 529 ~~l~~l~~L~~L~L--s~N~l~~~ip~~l~~---~l~~L~~L~ls~n~l~ 573 (611)
..+...++|++|+| ++|.|++.....+.. ..++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 67888899999999 889998654333332 2689999999999886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=4.8e-07 Score=80.32 Aligned_cols=83 Identities=10% Similarity=0.095 Sum_probs=39.0
Q ss_pred CCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCc-ccccCcccccCC----CCCCEEECCCCc-CcccChh
Q 047139 480 QLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNH-LSGEIPPSLKNC----SLMDSLDLGENQ-LSGNIPA 553 (611)
Q Consensus 480 ~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~ip~ 553 (611)
+|+.||+++|.+++.+-.. +..+++|++|+|++|. +++..-..+..+ ++|+.|+|++|. +|+..-.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~--------L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH--------MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG--------GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCCccHHHHHH--------hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4555666555544322211 2235555555555553 444333333332 245555555552 5544444
Q ss_pred HHhhcCCCCcEEECcCCc
Q 047139 554 WIGESMPSLSILRLRSNH 571 (611)
Q Consensus 554 ~l~~~l~~L~~L~ls~n~ 571 (611)
.+.. +++|++|++++|+
T Consensus 134 ~L~~-~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 ALHH-FRNLKYLFLSDLP 150 (176)
T ss_dssp HGGG-CTTCCEEEEESCT
T ss_pred HHhc-CCCCCEEECCCCC
Confidence 4443 5555555555553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=4e-06 Score=74.40 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=16.1
Q ss_pred CCCEEEccCCCCCCCCCccCCCCCCCCEEEccCCC
Q 047139 155 NLLSLDLSSNDLQGDIPDGFSSLNSLQLLDLSGNS 189 (611)
Q Consensus 155 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 189 (611)
+|++||+++|.++..--..+.++++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 44555555554443322334444455555555443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.56 E-value=2.5e-05 Score=70.58 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=70.1
Q ss_pred hhccCCCCeEECcCC-CCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----CcccccCCCCCCEEECCCCcCcc
Q 047139 475 VGNLKQLLTLVISNN-NLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IPPSLKNCSLMDSLDLGENQLSG 549 (611)
Q Consensus 475 l~~l~~L~~L~L~~n-~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 549 (611)
+.+-+.|++|+|++| +|.+-+.. .+-+.+..-+.|+.|+|++|++.+. +.+.+..-+.|++|+|++|.|++
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~----~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIR----SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHH----HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HhcCCCccEEECCCCCCCCHHHHH----HHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 344566777777764 55421110 2333444566777888888877643 34455566778888888888776
Q ss_pred cChhHHhhc---CCCCcEEECcCC---cCcc----cCCccccCCCCCCEeeccCCcC
Q 047139 550 NIPAWIGES---MPSLSILRLRSN---HFNG----TIPSELCKLSALHILDLSHNNL 596 (611)
Q Consensus 550 ~ip~~l~~~---l~~L~~L~ls~n---~l~~----~~p~~l~~l~~L~~L~ls~n~l 596 (611)
..-..+.+. -+.|++|+|++| .+.. .+-+.+..-+.|..|+++.|..
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 554444432 356788888765 3332 1334455557777888776654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.23 E-value=0.0001 Score=66.56 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=75.9
Q ss_pred CcccCCCC-eeec----ccccchhccCCCCeEECcCCCCCCCCCCcccccCcccccCcCCCCEEECcCCccccc----Cc
Q 047139 458 RDLDISFN-SING----SIPQSVGNLKQLLTLVISNNNLSDMTNNNFSGEIPESIGSLLTIRFLVLSNNHLSGE----IP 528 (611)
Q Consensus 458 ~~L~Ls~n-~l~~----~~~~~l~~l~~L~~L~L~~n~i~~l~~n~~~g~ip~~~~~l~~L~~L~Ls~n~l~~~----~p 528 (611)
++|+|++| .+.. .+.+.+..-+.|+.|+|++|+|.|-... .+.+.+..-+.|++|+|++|.|.+. +.
T Consensus 44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~----alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR----GLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT----THHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH----HHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 44455664 5543 2445566678899999999988754322 3344555678999999999999853 44
Q ss_pred ccccCCCCCCEEECCCC---cCccc----ChhHHhhcCCCCcEEECcCCcCc
Q 047139 529 PSLKNCSLMDSLDLGEN---QLSGN----IPAWIGESMPSLSILRLRSNHFN 573 (611)
Q Consensus 529 ~~l~~l~~L~~L~Ls~N---~l~~~----ip~~l~~~l~~L~~L~ls~n~l~ 573 (611)
+.+..-+.|++|+|++| .+... +-..+.. -+.|+.|+++.|.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~-N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFASME 170 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCCHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh-CCCcCeEeccCCCcc
Confidence 56777788999999876 34432 2233333 689999999988654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.86 E-value=0.0016 Score=54.84 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=22.2
Q ss_pred CCCEEECcCCcccccCcccccCCCCCCEEECCCCcC
Q 047139 512 TIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQL 547 (611)
Q Consensus 512 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 547 (611)
+|++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 466666666666644445566666666666666644
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.50 E-value=0.0028 Score=53.28 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=47.8
Q ss_pred CEEECcCCccc-ccCcccccCCCCCCEEECCCCcCcccChhHHhhcCCCCcEEECcCCcCcc
Q 047139 514 RFLVLSNNHLS-GEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG 574 (611)
Q Consensus 514 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~~l~~L~~L~ls~n~l~~ 574 (611)
..++.+++.++ ..+|..+. .+|+.|+|++|+|+ .+|...+..+++|+.|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCeec
Confidence 47899999987 46675543 46999999999999 7888777779999999999998874
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.11 E-value=23 Score=27.44 Aligned_cols=16 Identities=0% Similarity=0.017 Sum_probs=7.8
Q ss_pred ccchhccCCCCeEECc
Q 047139 472 PQSVGNLKQLLTLVIS 487 (611)
Q Consensus 472 ~~~l~~l~~L~~L~L~ 487 (611)
..+|.+|++|+.+.+-
T Consensus 13 ~~aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQ 28 (100)
T ss_dssp SCTTTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcC
Confidence 3444555555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.71 E-value=1.2e+02 Score=23.19 Aligned_cols=46 Identities=20% Similarity=0.042 Sum_probs=27.8
Q ss_pred CCccCCcccCCCCCCcEEEccCCcccccCCCCccCcccCceEEecCC
Q 047139 245 LTGNLPISLGYLKNLRYLELWYNSFLGSIPPSLGNLTFLEELYLTSN 291 (611)
Q Consensus 245 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 291 (611)
++..-...|.+|.+|+.+.+-.+ ++..-...|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34344456667777777777654 34344456777777777777553
Done!