BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047141
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/197 (49%), Positives = 131/197 (66%), Gaps = 4/197 (2%)
Query: 22 EPSPLQDFCVADPSSSA-RVNGLACMDPKLAQADHFVFSG-LHVAGNTSNPLGSRVTPVT 79
+P PLQDFCVAD A VNG C P D F+FS L AGNTS P GS VT +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTC-KPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 80 VAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTS-NPDNRLIS 138
VA+ PG NTLG+++AR+D+AP G PPH+HPRATEI V++G L VG + S + N+L S
Sbjct: 61 VAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 139 KVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIADDLLA 198
+V++ G+ FV P GL+HFQ NVG A+ + +SQNPG++ + T+FGS+P I +L
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 199 KAFQVDKSVVGQLQTKF 215
KA +V+ VV L++KF
Sbjct: 181 KALRVEAGVVELLKSKF 197
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 179 bits (455), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 130/197 (65%), Gaps = 4/197 (2%)
Query: 22 EPSPLQDFCVADPSSSA-RVNGLACMDPKLAQADHFVFSG-LHVAGNTSNPLGSRVTPVT 79
+P PLQDFCVAD A VNG C P D F+FS L AGNTS P GS VT +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTC-KPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 80 VAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTS-NPDNRLIS 138
VA+ PG NTLG+++ R+D+AP G PPH+HPRATEI V++G L VG + S + N+L S
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 139 KVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIADDLLA 198
+V++ G+ FV P GL+HFQ NVG A+ + +SQNPG++ + T+FGS+P I +L
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 199 KAFQVDKSVVGQLQTKF 215
KA +V+ VV L++KF
Sbjct: 181 KALRVEAGVVELLKSKF 197
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 179 bits (455), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 130/197 (65%), Gaps = 4/197 (2%)
Query: 22 EPSPLQDFCVADPSSSA-RVNGLACMDPKLAQADHFVFSG-LHVAGNTSNPLGSRVTPVT 79
+P PLQDFCVAD A VNG C P D F+FS L AGNTS P GS VT +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTC-KPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 80 VAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTS-NPDNRLIS 138
VA+ PG NTLG+++ R+D+AP G PPH+HPRATEI V++G L VG + S + N+L S
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 139 KVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIADDLLA 198
+V++ G+ FV P GL+HFQ NVG A+ + +SQNPG++ + T+FGS+P I +L
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 199 KAFQVDKSVVGQLQTKF 215
KA +V+ VV L++KF
Sbjct: 181 KALRVEAGVVELLKSKF 197
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 65 GNTSNPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHV 108
GN L SR+T +A+ P L + + A +D+ PW +PPHV
Sbjct: 30 GNVEAALVSRITAEELAKXPRLKFIQVVTAGLDHLPWESIPPHV 73
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 6/146 (4%)
Query: 69 NPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFV 128
NP R++ + +P L G++ + G+ PH + A ++ V G V V
Sbjct: 345 NPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV 404
Query: 129 TSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGS 188
N + L++G + V P + ++ G + + + + V + VF
Sbjct: 405 NXQ-GNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVV--FKTHHNAVSSYIKDVFR- 460
Query: 189 NPAIADDLLAKAFQVDKSVVGQLQTK 214
AI ++L+ ++ + +S V QL+ +
Sbjct: 461 --AIPSEVLSNSYNLGQSQVRQLKYQ 484
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 6/146 (4%)
Query: 69 NPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFV 128
NP R++ + +P L G++ + G+ PH + A ++ V G V V
Sbjct: 344 NPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV 403
Query: 129 TSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGS 188
N + L++G + V P + ++ G + + + + V + VF
Sbjct: 404 NCQ-GNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVV--FKTHHNAVSSYIKDVFR- 459
Query: 189 NPAIADDLLAKAFQVDKSVVGQLQTK 214
AI ++L+ ++ + +S V QL+ +
Sbjct: 460 --AIPSEVLSNSYNLGQSQVRQLKYQ 483
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 30/151 (19%)
Query: 72 GSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSN 131
G+ + + + PG + + A I P + H HP A E V++G +++ S
Sbjct: 217 GNELRLASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFAS- 273
Query: 132 PDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIA--------- 182
+ + LQ+GDV P G H RN SSQ P I +
Sbjct: 274 -EGKASVSRLQQGDVGYVPKGYGHAIRN------------SSQKPLDIVVVFNDGDYQSI 320
Query: 183 --NTVFGSNPAIADDLLAKAFQVDKSVVGQL 211
+T SNP+ +L FQ+ + +L
Sbjct: 321 DLSTWLASNPS---SVLGNTFQISPELTKKL 348
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 83 IPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQ 142
I N L +++ G H H E+ V EG+L++ F N LQ
Sbjct: 25 IAEXNDYQFKLVKVE----GEFVWHEHADTDEVFIVXEGTLQIAFRDQNI-------TLQ 73
Query: 143 KGDVFVFPVGLIH 155
G+ +V P G+ H
Sbjct: 74 AGEXYVIPKGVEH 86
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 52 QADHFVFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHV 108
+ DH S + + +T N L G VTV ++P L R+ P + H
Sbjct: 39 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIAELHW 96
Query: 109 HPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAF 166
H A E +I GS V V R + +GD++ FP GL H + + G F
Sbjct: 97 HKEA-EWAYMIYGSARVTIVDEK--GRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFP 150
IA A + P + H HP E I G + S+ R + Q GDV P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 314
Query: 151 VGLIHFQRNVG 161
+ H+ N+G
Sbjct: 315 FAMGHYVENIG 325
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 52 QADHFVFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHV 108
+ DH S + + +T N L G VTV ++P L R+ P + H
Sbjct: 39 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHW 96
Query: 109 HPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAF 166
H A E +I GS V V R + +GD++ FP GL H + + G F
Sbjct: 97 HKEA-EWAYMIYGSARVTIVDEK--GRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFP 150
IA A + P + H HP E I G + S+ R + Q GDV P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 314
Query: 151 VGLIHFQRNVG 161
+ H+ N+G
Sbjct: 315 FAMGHYVENIG 325
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 52 QADHFVFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHV 108
+ DH S + + +T N L G VTV ++P L R+ P + H
Sbjct: 39 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHW 96
Query: 109 HPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAF 166
H A E +I GS V V R + +GD++ FP GL H + + G F
Sbjct: 97 HKEA-EWAYMIYGSARVTIVDEK--GRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFP 150
IA A + P + H HP E I G + S+ R + Q GDV P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 314
Query: 151 VGLIHFQRNVG 161
+ H+ N+G
Sbjct: 315 FAMGHYVENIG 325
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 52 QADHFVFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHV 108
+ DH S + + +T N L G VTV ++P L R+ P + H
Sbjct: 39 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHW 96
Query: 109 HPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAF 166
H A E +I GS V V R + +GD++ FP GL H + + G F
Sbjct: 97 HKEA-EWAYMIYGSARVTIVDEK--GRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFP 150
IA A + P + H HP E I G + S+ R + Q GDV P
Sbjct: 255 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 312
Query: 151 VGLIHFQRNVG 161
+ H+ N+G
Sbjct: 313 FAMGHYVENIG 323
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 52 QADHFVFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHV 108
+ DH S + + +T N L G VTV ++P L R+ P + H
Sbjct: 39 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHW 96
Query: 109 HPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAF 166
H A E +I GS V V R + +GD++ FP GL H + + G F
Sbjct: 97 HKEA-EWAYMIYGSARVTIVDEK--GRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFP 150
IA A + P + H HP E I G + S+ R + Q GDV P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 314
Query: 151 VGLIHFQRNVG 161
+ H+ N+G
Sbjct: 315 FAMGHYVENIG 325
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 52 QADHFVFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHV 108
+ DH S + + +T N L G VTV ++P L R+ P + H
Sbjct: 39 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHW 96
Query: 109 HPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAF 166
H A E +I GS V V R + +GD++ FP GL H + + G F
Sbjct: 97 HKEA-EWAYMIYGSARVTIVDEK--GRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFP 150
IA A + P + H HP E I G + S+ R + Q GDV P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 314
Query: 151 VGLIHFQRNVG 161
+ H+ N+G
Sbjct: 315 FAMGHYVENIG 325
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 52 QADHFVFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHV 108
+ DH S + + +T N L G VTV ++P L R+ P + H
Sbjct: 34 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHW 91
Query: 109 HPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAF 166
H A E +I GS V V R + +GD++ FP GL H + + G F
Sbjct: 92 HKEA-EWAYMIYGSARVTIVDEK--GRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 146
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFP 150
IA A + P + H HP E I G + S+ R + Q GDV P
Sbjct: 252 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 309
Query: 151 VGLIHFQRNVG 161
+ H+ N+G
Sbjct: 310 FAMGHYVENIG 320
>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
Length = 418
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 68 SNPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGF 127
SN LG ++ +T + P L L + L+ +D + PH + +A +L + EG +
Sbjct: 229 SNKLG-KLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIEL 287
Query: 128 V-----------TSNP-DNRLISKVLQKGDVFVFPVG 152
V P + R L + D+FV P G
Sbjct: 288 VGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAG 324
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 87 NTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISK-----VL 141
N+L + ++ I+ + PH + +A IL V EG V V + + L
Sbjct: 235 NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAEL 294
Query: 142 QKGDVFVFP 150
K DVFV P
Sbjct: 295 SKDDVFVIP 303
>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed
Storage Protein Of Mungbean
Length = 424
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 68 SNPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGF 127
SN LG R +T + P L L + + +D ++ PH + +A IL + EG +
Sbjct: 239 SNKLG-RWFEITPEKNPQLRDLDMFIRSVDMKEGSLLLPHYNSKAIVILVINEGKANIEL 297
Query: 128 V 128
V
Sbjct: 298 V 298
>pdb|2EAA|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-3
Length = 433
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 68 SNPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGF 127
SN G R +T + P L L + ++ +D ++ PH + +A I+ + EG ++
Sbjct: 243 SNKFG-RWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYNSKAIVIMVINEGEAKIEL 301
Query: 128 V 128
V
Sbjct: 302 V 302
>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
Length = 510
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 106 PHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFP 150
PH + A I+ + G V V SN NR+ + LQ+G V V P
Sbjct: 387 PHYNTNAHSIIYALRGRAHVQVVDSN-GNRVYDEELQEGHVLVVP 430
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 68 SNPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGF 127
SN G ++ +T + L L I L + + PH + RAT IL EG EV
Sbjct: 259 SNNYG-KLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVEL 317
Query: 128 VTSNPDN---------RLISKVLQKGDVFV----FPVGL 153
V R + L +GD+ V FPV L
Sbjct: 318 VGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVAL 356
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 18/101 (17%)
Query: 68 SNPLGS--RVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEV 125
SN G +TP +Q L L I L + + PH + RAT IL EG EV
Sbjct: 19 SNNYGKLYEITPEKNSQ---LRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEV 75
Query: 126 GFVTSNPDN---------RLISKVLQKGDVFV----FPVGL 153
V R + L +GD+ V FPV L
Sbjct: 76 ELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVAL 116
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 67 TSNPLGS----RVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGS 122
+ NP+ S + +T + P L L I L+ +D ++ PH + +A IL + EG
Sbjct: 221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGD 280
Query: 123 LEVGFV 128
+ V
Sbjct: 281 ANIELV 286
>pdb|1MI2|A Chain A, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|1MI2|B Chain B, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|3N52|A Chain A, Crystal Structure Analysis Of Mip2
pdb|3N52|B Chain B, Crystal Structure Analysis Of Mip2
pdb|3N52|C Chain C, Crystal Structure Analysis Of Mip2
pdb|3N52|D Chain D, Crystal Structure Analysis Of Mip2
Length = 73
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 93 LARIDYA---PWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQK 143
L R+D+ V PP H TE++ ++G +V +P+ L+ K++QK
Sbjct: 15 LPRVDFKNIQSLSVTPPGPHCAQTEVIATLKGGQKVCL---DPEAPLVQKIIQK 65
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 67 TSNPLGS----RVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGS 122
+ NP+ S + +T + P L L I L+ +D ++ PH + +A IL + EG
Sbjct: 221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGD 280
Query: 123 LEVGFV 128
+ V
Sbjct: 281 ANIELV 286
>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|D Chain D, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|E Chain E, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|F Chain F, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
Length = 416
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 67 TSNPLGS----RVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGS 122
+ NP+ S + +T + P L L I L+ +D ++ PH + +A IL + EG
Sbjct: 221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGD 280
Query: 123 LEVGFV 128
+ V
Sbjct: 281 ANIELV 286
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 362 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 414
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 415 LVAQHLNVEKS 425
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 350 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 402
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 403 LVAQHLNVEKS 413
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 350 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 402
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 403 LVAQHLNVEKS 413
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 350 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 402
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 403 LVAQHLNVEKS 413
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 350 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 402
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 403 LVAQHLNVEKS 413
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 350 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 402
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 403 LVAQHLNVEKS 413
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 362 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 414
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 415 LVAQHLNVEKS 425
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 350 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 402
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 403 LVAQHLNVEKS 413
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 362 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 414
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 415 LVAQHLNVEKS 425
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 351 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 404 LVAQHLNVEKS 414
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 148 VFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIAD------------D 195
+ +G I F++ G G ++ + A+TVFG NP++ + D
Sbjct: 362 ILHLGNIKFEKGAGEGAVL-------KDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 414
Query: 196 LLAKAFQVDKS 206
L+A+ V+KS
Sbjct: 415 LVAQHLNVEKS 425
>pdb|3H8U|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
With Double- Stranded Beta-Helix Domain (Yp_001338853.1)
From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
At 1.80 A Resolution
pdb|3H8U|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
With Double- Stranded Beta-Helix Domain (Yp_001338853.1)
From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
At 1.80 A Resolution
Length = 125
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 107 HVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVG 161
HVHP + TVI G E + N +++ L+ GD+ + G +H N G
Sbjct: 55 HVHPHGQDTWTVISGEAEY-----HQGNGIVTH-LKAGDIAIAKPGQVHGAXNSG 103
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 117 TVIEGSLEVGFVTSNPDNRLISK-VLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQN 175
T+ G+ V +S R V+QKGDV + G + G A +ISG S +
Sbjct: 194 TIQNGTYRVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGGYA-TISGTSMAS 252
Query: 176 PGVITIANTVFGSNPAIADDLLAKAFQVDKSVVGQLQTK 214
P +A ++ +PA A VD V G+LQT+
Sbjct: 253 PHAAGLAAKIWAQSPA--------ASNVD--VRGELQTR 281
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 121 GSLEVGFVTSNPDNRLISKVLQKG 144
GS ++ F+TS P N ++S++LQ G
Sbjct: 85 GSADLCFITSTPINDVVSEILQAG 108
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 121 GSLEVGFVTSNPDNRLISKVLQKG 144
GS ++ F+TS P N ++S++LQ G
Sbjct: 85 GSADLCFITSTPINDVVSEILQAG 108
>pdb|1E6Y|A Chain A, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|D Chain D, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 569
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 171 LSSQNPGVITIANTVFGSNPAIADDLLAKAFQVDKSVVGQLQTKF 215
L+ PG + + ++PA+ DD K F D ++ ++ +F
Sbjct: 149 LNHAMPGAAVVQEMMVETHPALVDDCYVKVFTGDDALADEIDKQF 193
>pdb|3VDG|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Formate And Acetate
pdb|3VFC|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Tartrate
Length = 445
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 63 VAGNTSNPLGSRVTPVTVAQIPGLNTLGI 91
+A N G+RVTPV A P LNT+G+
Sbjct: 23 MAHNRIRITGARVTPVAFADPPLLNTVGV 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,079,110
Number of Sequences: 62578
Number of extensions: 233270
Number of successful extensions: 667
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 74
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)