Query 047141
Match_columns 215
No_of_seqs 298 out of 1681
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:04:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 4E-27 8.6E-32 212.5 18.2 159 46-214 204-362 (367)
2 PLN00212 glutelin; Provisional 99.9 1.3E-25 2.8E-30 208.0 17.6 145 65-214 322-468 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 1.7E-23 3.7E-28 188.9 16.8 135 70-214 48-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 1.6E-23 3.4E-28 165.8 11.1 127 67-208 9-143 (144)
5 smart00835 Cupin_1 Cupin. This 99.9 1.2E-20 2.7E-25 149.6 17.7 135 69-208 8-145 (146)
6 PLN00212 glutelin; Provisional 99.8 6.6E-20 1.4E-24 170.1 16.6 140 69-213 59-248 (493)
7 COG2140 Thermophilic glucose-6 99.8 8.9E-18 1.9E-22 139.4 12.2 149 52-214 49-199 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 1.4E-13 3.1E-18 95.0 7.8 70 95-171 2-71 (71)
9 COG1917 Uncharacterized conser 99.4 2.8E-12 6.1E-17 99.6 11.3 86 81-173 33-118 (131)
10 PRK13290 ectC L-ectoine syntha 99.4 6.5E-12 1.4E-16 97.6 11.5 82 89-179 33-115 (125)
11 COG0662 {ManC} Mannose-6-phosp 99.4 7.9E-12 1.7E-16 97.1 11.8 82 89-177 34-115 (127)
12 PRK04190 glucose-6-phosphate i 99.3 3.7E-11 8E-16 99.7 13.6 90 83-174 60-157 (191)
13 COG3837 Uncharacterized conser 99.3 3E-11 6.5E-16 96.1 9.7 92 82-182 35-129 (161)
14 PRK09943 DNA-binding transcrip 99.1 6.2E-10 1.3E-14 91.5 11.6 76 89-172 105-181 (185)
15 TIGR01479 GMP_PMI mannose-1-ph 99.1 5.5E-10 1.2E-14 104.2 12.1 78 90-174 375-452 (468)
16 COG4101 Predicted mannose-6-ph 99.1 5.3E-10 1.2E-14 85.2 9.6 85 90-178 45-129 (142)
17 PRK11171 hypothetical protein; 99.1 1.4E-09 3.1E-14 94.6 13.6 108 48-172 28-136 (266)
18 PRK15460 cpsB mannose-1-phosph 99.1 7.9E-10 1.7E-14 103.3 11.9 78 89-173 383-460 (478)
19 PF01050 MannoseP_isomer: Mann 99.0 3.2E-09 6.9E-14 85.1 10.5 76 90-172 62-137 (151)
20 TIGR03214 ura-cupin putative a 99.0 4E-09 8.6E-14 91.5 10.5 73 90-170 178-251 (260)
21 PRK11171 hypothetical protein; 98.9 1.1E-08 2.4E-13 89.0 10.8 75 90-172 183-258 (266)
22 TIGR03214 ura-cupin putative a 98.9 1.5E-08 3.2E-13 87.9 11.5 76 90-172 57-133 (260)
23 PF06560 GPI: Glucose-6-phosph 98.7 2.2E-07 4.8E-12 76.5 11.8 87 86-174 45-147 (182)
24 PRK13264 3-hydroxyanthranilate 98.7 1.3E-07 2.8E-12 77.3 10.3 73 94-172 37-109 (177)
25 PF02041 Auxin_BP: Auxin bindi 98.7 3.1E-07 6.7E-12 72.8 11.5 97 84-184 39-139 (167)
26 TIGR03037 anthran_nbaC 3-hydro 98.7 1.9E-07 4E-12 75.2 9.5 67 99-171 36-102 (159)
27 PF02311 AraC_binding: AraC-li 98.5 6.2E-07 1.4E-11 67.6 7.5 65 100-172 12-76 (136)
28 PF11699 CENP-C_C: Mif2/CENP-C 98.4 1.9E-06 4E-11 62.6 8.8 72 90-169 11-83 (85)
29 PF12973 Cupin_7: ChrR Cupin-l 98.4 1.3E-06 2.8E-11 63.8 7.7 81 71-169 8-88 (91)
30 PF03079 ARD: ARD/ARD' family; 98.4 2.8E-06 6.1E-11 68.5 10.2 70 104-177 85-154 (157)
31 TIGR02451 anti_sig_ChrR anti-s 98.3 1.7E-06 3.7E-11 73.1 7.9 72 91-174 127-198 (215)
32 PRK15457 ethanolamine utilizat 98.3 8.4E-06 1.8E-10 69.2 11.4 72 88-171 154-225 (233)
33 PRK10371 DNA-binding transcrip 98.3 3.7E-06 8E-11 74.1 8.4 59 96-162 31-89 (302)
34 COG1791 Uncharacterized conser 98.2 1.7E-05 3.8E-10 64.2 9.5 73 105-181 89-161 (181)
35 COG4297 Uncharacterized protei 98.1 7.3E-06 1.6E-10 64.2 6.8 63 104-171 56-118 (163)
36 PF06339 Ectoine_synth: Ectoin 98.1 6.1E-05 1.3E-09 58.2 10.8 84 87-178 31-114 (126)
37 TIGR02272 gentisate_1_2 gentis 98.1 1.9E-05 4.1E-10 70.9 8.9 75 91-172 81-155 (335)
38 PRK10296 DNA-binding transcrip 98.0 3.5E-05 7.6E-10 66.5 9.9 52 101-160 33-84 (278)
39 PRK13501 transcriptional activ 98.0 2E-05 4.4E-10 68.5 7.8 62 90-161 19-80 (290)
40 TIGR02297 HpaA 4-hydroxyphenyl 97.9 2.6E-05 5.7E-10 67.4 7.3 61 101-168 33-93 (287)
41 COG3435 Gentisate 1,2-dioxygen 97.9 2E-05 4.3E-10 69.1 6.4 116 50-173 43-167 (351)
42 PF05523 FdtA: WxcM-like, C-te 97.9 7E-05 1.5E-09 58.5 8.6 72 98-174 40-112 (131)
43 PRK13500 transcriptional activ 97.9 4.5E-05 9.8E-10 67.4 8.4 55 100-162 57-111 (312)
44 PF06052 3-HAO: 3-hydroxyanthr 97.8 0.00024 5.1E-09 56.5 10.2 79 93-177 35-113 (151)
45 PF14499 DUF4437: Domain of un 97.8 3.3E-05 7.2E-10 66.7 5.9 73 89-168 34-106 (251)
46 PF05899 Cupin_3: Protein of u 97.8 6.1E-05 1.3E-09 53.1 6.0 58 91-157 7-64 (74)
47 KOG2107 Uncharacterized conser 97.7 7E-05 1.5E-09 60.3 6.0 56 104-162 86-141 (179)
48 PRK13502 transcriptional activ 97.7 0.00013 2.8E-09 63.0 8.0 55 99-161 26-80 (282)
49 PRK13503 transcriptional activ 97.7 6.1E-05 1.3E-09 64.7 5.3 53 100-160 24-76 (278)
50 TIGR02272 gentisate_1_2 gentis 97.6 0.00027 5.8E-09 63.5 7.5 87 72-170 232-319 (335)
51 COG3257 GlxB Uncharacterized p 97.5 0.00077 1.7E-08 56.9 9.6 74 93-173 63-137 (264)
52 PF06249 EutQ: Ethanolamine ut 97.3 0.00078 1.7E-08 54.0 6.6 68 91-170 77-144 (152)
53 COG1898 RfbC dTDP-4-dehydrorha 97.2 0.0049 1.1E-07 50.5 10.0 69 100-168 54-129 (173)
54 COG4766 EutQ Ethanolamine util 97.1 0.0051 1.1E-07 49.2 9.3 69 90-170 99-167 (176)
55 TIGR01221 rmlC dTDP-4-dehydror 96.9 0.011 2.4E-07 48.6 10.3 79 99-178 52-139 (176)
56 COG3450 Predicted enzyme of th 96.9 0.0037 8.1E-08 47.9 6.8 61 90-159 44-104 (116)
57 PF05995 CDO_I: Cysteine dioxy 96.9 0.025 5.4E-07 46.2 11.9 85 90-174 74-165 (175)
58 COG3435 Gentisate 1,2-dioxygen 96.8 0.004 8.8E-08 54.9 6.7 90 70-170 241-331 (351)
59 PF00908 dTDP_sugar_isom: dTDP 96.7 0.029 6.3E-07 46.1 10.8 79 99-178 51-139 (176)
60 PF13621 Cupin_8: Cupin-like d 96.5 0.017 3.8E-07 48.3 8.7 71 93-164 132-236 (251)
61 PRK00924 5-keto-4-deoxyuronate 95.9 0.047 1E-06 47.9 8.5 83 89-175 173-261 (276)
62 PF07385 DUF1498: Protein of u 95.7 0.077 1.7E-06 45.0 8.7 74 96-171 92-186 (225)
63 PF02678 Pirin: Pirin; InterP 95.6 0.076 1.6E-06 40.1 7.6 63 101-169 39-104 (107)
64 PF04209 HgmA: homogentisate 1 95.5 0.073 1.6E-06 49.4 8.3 59 107-172 141-199 (424)
65 PF08007 Cupin_4: Cupin superf 95.2 0.22 4.8E-06 44.3 10.6 67 94-161 116-200 (319)
66 PF12852 Cupin_6: Cupin 95.2 0.088 1.9E-06 42.8 7.4 45 113-162 36-80 (186)
67 PF13759 2OG-FeII_Oxy_5: Putat 95.2 0.064 1.4E-06 39.5 5.9 64 97-160 6-89 (101)
68 PF14499 DUF4437: Domain of un 95.0 0.026 5.5E-07 48.9 3.8 75 91-172 171-245 (251)
69 PF07847 DUF1637: Protein of u 94.9 0.4 8.7E-06 40.2 10.4 97 71-173 29-143 (200)
70 KOG3995 3-hydroxyanthranilate 94.8 0.059 1.3E-06 45.5 5.2 59 98-160 40-98 (279)
71 TIGR01015 hmgA homogentisate 1 94.8 0.28 6.2E-06 45.4 10.0 60 106-172 142-201 (429)
72 PRK10572 DNA-binding transcrip 94.8 0.12 2.5E-06 44.8 7.3 49 106-162 44-92 (290)
73 COG1741 Pirin-related protein 94.8 0.1 2.2E-06 45.9 6.9 71 95-171 48-122 (276)
74 TIGR02466 conserved hypothetic 94.7 0.13 2.9E-06 43.0 7.3 78 94-171 99-196 (201)
75 PRK05341 homogentisate 1,2-dio 94.7 0.3 6.6E-06 45.4 10.0 56 106-169 148-203 (438)
76 COG3822 ABC-type sugar transpo 94.4 0.19 4.2E-06 41.7 7.2 77 95-173 90-187 (225)
77 PLN02658 homogentisate 1,2-dio 94.3 0.4 8.7E-06 44.6 9.9 55 107-169 142-196 (435)
78 PF02373 JmjC: JmjC domain, hy 94.1 0.14 3E-06 37.8 5.3 30 135-164 79-108 (114)
79 COG5553 Predicted metal-depend 93.7 0.49 1.1E-05 38.4 8.0 77 91-171 73-155 (191)
80 KOG3706 Uncharacterized conser 93.6 0.047 1E-06 51.1 2.4 61 99-160 325-404 (629)
81 PRK12335 tellurite resistance 93.6 0.41 8.8E-06 41.8 8.2 64 99-163 19-84 (287)
82 PF06865 DUF1255: Protein of u 93.5 0.91 2E-05 33.5 8.6 65 97-171 29-93 (94)
83 PRK09685 DNA-binding transcrip 93.0 0.73 1.6E-05 39.9 9.0 65 91-162 45-114 (302)
84 PF05118 Asp_Arg_Hydrox: Aspar 93.0 0.55 1.2E-05 37.8 7.5 70 93-169 82-156 (163)
85 COG3257 GlxB Uncharacterized p 92.7 0.55 1.2E-05 40.0 7.3 77 84-168 175-252 (264)
86 PRK10579 hypothetical protein; 92.5 2 4.3E-05 31.8 9.1 63 98-170 30-92 (94)
87 COG3806 ChrR Transcriptional a 92.0 0.51 1.1E-05 39.5 6.2 90 68-174 110-199 (216)
88 PF05726 Pirin_C: Pirin C-term 91.6 1.7 3.7E-05 32.1 8.2 68 94-171 2-69 (104)
89 COG3508 HmgA Homogentisate 1,2 91.3 2.7 6E-05 38.2 10.5 68 89-163 123-190 (427)
90 PF09313 DUF1971: Domain of un 90.5 2.1 4.6E-05 30.7 7.5 61 102-162 14-75 (82)
91 PRK15131 mannose-6-phosphate i 90.4 1.8 3.9E-05 39.8 8.8 58 91-158 321-378 (389)
92 KOG2757 Mannose-6-phosphate is 88.8 2.4 5.1E-05 38.7 8.0 79 83-171 327-405 (411)
93 PLN02288 mannose-6-phosphate i 88.7 1.5 3.3E-05 40.5 7.0 58 90-153 333-390 (394)
94 PF14525 AraC_binding_2: AraC- 88.7 5.7 0.00012 30.7 9.5 65 91-162 34-98 (172)
95 TIGR00218 manA mannose-6-phosp 88.3 3.5 7.6E-05 36.4 8.8 59 90-158 234-292 (302)
96 PF04962 KduI: KduI/IolB famil 87.9 12 0.00026 32.6 11.7 98 73-175 135-247 (261)
97 PRK09391 fixK transcriptional 87.6 5.7 0.00012 33.2 9.4 78 90-169 35-112 (230)
98 PF11142 DUF2917: Protein of u 86.8 3.7 8E-05 27.9 6.3 57 96-159 2-58 (63)
99 PRK11753 DNA-binding transcrip 85.9 7.8 0.00017 31.4 9.1 54 94-149 21-74 (211)
100 COG2850 Uncharacterized conser 84.1 1.4 3E-05 40.2 4.0 62 98-160 126-202 (383)
101 PF00027 cNMP_binding: Cyclic 82.2 4.3 9.3E-05 27.6 5.3 48 97-147 3-51 (91)
102 COG3717 KduI 5-keto 4-deoxyuro 81.1 7.8 0.00017 33.4 7.2 87 86-176 172-264 (278)
103 COG3123 Uncharacterized protei 80.0 6.6 0.00014 28.5 5.5 42 111-157 40-81 (94)
104 PRK13918 CRP/FNR family transc 78.2 9.3 0.0002 30.7 6.8 54 95-149 8-62 (202)
105 smart00100 cNMP Cyclic nucleot 77.7 13 0.00028 25.9 6.8 54 95-150 19-72 (120)
106 PF06172 Cupin_5: Cupin superf 77.4 33 0.00072 27.0 11.2 77 91-170 41-124 (139)
107 PHA02984 hypothetical protein; 75.4 19 0.00041 31.6 8.0 61 112-176 91-154 (286)
108 cd00038 CAP_ED effector domain 74.8 13 0.00028 25.8 6.0 54 94-149 18-71 (115)
109 COG1482 ManA Phosphomannose is 74.2 12 0.00025 33.6 6.7 57 91-157 242-298 (312)
110 PF04115 Ureidogly_hydro: Urei 73.9 18 0.00039 29.2 7.2 67 105-171 73-144 (165)
111 PRK00924 5-keto-4-deoxyuronate 73.0 28 0.00061 30.7 8.7 52 111-169 72-126 (276)
112 COG1482 ManA Phosphomannose is 72.7 6 0.00013 35.4 4.5 21 137-157 158-178 (312)
113 PRK03606 ureidoglycolate hydro 71.0 33 0.00073 27.7 8.1 66 105-170 72-140 (162)
114 PRK10402 DNA-binding transcrip 71.0 15 0.00032 30.5 6.4 52 96-149 34-85 (226)
115 KOG2130 Phosphatidylserine-spe 70.9 7.8 0.00017 34.9 4.7 47 134-180 260-306 (407)
116 PLN02868 acyl-CoA thioesterase 70.6 16 0.00035 33.5 7.0 53 94-149 32-84 (413)
117 PRK15186 AraC family transcrip 70.4 16 0.00034 32.3 6.6 46 113-164 39-84 (291)
118 TIGR00218 manA mannose-6-phosp 70.3 3.3 7.2E-05 36.5 2.3 19 138-156 152-170 (302)
119 PHA02890 hypothetical protein; 67.3 35 0.00076 29.8 7.8 59 112-176 90-151 (278)
120 PF04962 KduI: KduI/IolB famil 66.6 54 0.0012 28.5 9.1 67 92-168 28-103 (261)
121 PRK15131 mannose-6-phosphate i 65.1 6.7 0.00014 36.1 3.3 22 136-157 236-257 (389)
122 PF04622 ERG2_Sigma1R: ERG2 an 62.2 27 0.00059 29.6 6.2 93 102-207 112-206 (216)
123 PRK10202 ebgC cryptic beta-D-g 60.2 35 0.00077 27.0 6.3 53 105-158 58-127 (149)
124 PF13640 2OG-FeII_Oxy_3: 2OG-F 58.6 30 0.00066 24.5 5.3 64 97-160 5-86 (100)
125 COG3718 IolB Uncharacterized e 56.4 1.3E+02 0.0029 26.0 9.4 87 73-163 14-103 (270)
126 KOG2131 Uncharacterized conser 55.6 14 0.0003 33.9 3.5 62 100-163 207-294 (427)
127 COG0664 Crp cAMP-binding prote 55.0 47 0.001 26.1 6.4 56 94-151 24-79 (214)
128 PRK11161 fumarate/nitrate redu 54.9 47 0.001 27.4 6.5 51 97-149 41-91 (235)
129 TIGR03697 NtcA_cyano global ni 53.9 31 0.00067 27.3 5.1 36 112-148 11-46 (193)
130 KOG3416 Predicted nucleic acid 53.6 43 0.00094 26.1 5.4 66 83-159 11-80 (134)
131 PF04074 DUF386: Domain of unk 52.8 61 0.0013 25.4 6.5 67 91-157 46-133 (153)
132 KOG1417 Homogentisate 1,2-diox 52.4 1.7E+02 0.0036 26.4 9.6 63 104-173 147-209 (446)
133 KOG4281 Uncharacterized conser 52.2 6.6 0.00014 33.3 0.9 81 90-172 74-173 (236)
134 PRK09392 ftrB transcriptional 49.8 77 0.0017 26.1 7.1 52 95-149 32-83 (236)
135 PRK14585 pgaD putative PGA bio 49.7 20 0.00042 28.3 3.1 25 190-214 88-112 (137)
136 COG2731 EbgC Beta-galactosidas 49.0 62 0.0013 26.0 5.9 59 103-161 60-136 (154)
137 PF13994 PgaD: PgaD-like prote 48.3 22 0.00047 27.8 3.2 23 191-213 100-122 (138)
138 TIGR00022 uncharacterized prot 48.0 1.2E+02 0.0026 23.5 7.5 26 103-128 60-85 (142)
139 PRK13395 ureidoglycolate hydro 46.0 1.4E+02 0.0031 24.4 7.7 67 105-171 72-142 (171)
140 PF13464 DUF4115: Domain of un 45.7 97 0.0021 21.2 7.3 49 118-168 4-52 (77)
141 PRK14584 hmsS hemin storage sy 44.2 27 0.00059 28.1 3.2 24 190-213 97-120 (153)
142 PRK02290 3-dehydroquinate synt 43.5 1.4E+02 0.003 27.3 7.9 84 71-160 251-337 (344)
143 PLN02288 mannose-6-phosphate i 37.6 27 0.00058 32.3 2.5 20 138-157 252-271 (394)
144 PLN03192 Voltage-dependent pot 37.1 75 0.0016 32.0 5.8 52 93-147 397-448 (823)
145 PHA00672 hypothetical protein 36.6 2.1E+02 0.0045 22.5 7.2 74 89-173 45-118 (152)
146 PF06719 AraC_N: AraC-type tra 35.9 2.1E+02 0.0046 22.3 7.7 52 113-171 24-78 (155)
147 PF13348 Y_phosphatase3C: Tyro 34.2 26 0.00055 23.5 1.4 28 184-215 40-67 (68)
148 PF05721 PhyH: Phytanoyl-CoA d 34.2 83 0.0018 24.5 4.7 25 135-159 178-202 (211)
149 PF13384 HTH_23: Homeodomain-l 32.8 53 0.0011 20.2 2.7 24 192-215 18-41 (50)
150 PF14801 GCD14_N: tRNA methylt 32.4 1E+02 0.0022 20.4 3.9 37 124-162 11-47 (54)
151 KOG0498 K+-channel ERG and rel 31.7 76 0.0016 31.8 4.7 48 97-147 446-493 (727)
152 KOG0500 Cyclic nucleotide-gate 31.4 94 0.002 29.7 5.0 46 97-147 334-379 (536)
153 PF00325 Crp: Bacterial regula 31.0 35 0.00075 20.0 1.4 23 192-214 3-25 (32)
154 KOG2132 Uncharacterized conser 30.9 53 0.0011 29.8 3.2 78 82-160 241-349 (355)
155 PF01959 DHQS: 3-dehydroquinat 30.8 1.7E+02 0.0036 26.8 6.4 84 71-160 261-347 (354)
156 PF05984 Cytomega_UL20A: Cytom 30.3 51 0.0011 23.9 2.5 21 1-21 1-21 (100)
157 COG1741 Pirin-related protein 29.9 3.8E+02 0.0083 23.5 11.9 41 83-125 166-206 (276)
158 PRK05467 Fe(II)-dependent oxyg 29.3 1.5E+02 0.0032 25.3 5.5 23 138-160 142-164 (226)
159 PF02787 CPSase_L_D3: Carbamoy 27.9 55 0.0012 25.1 2.5 24 191-214 72-95 (123)
160 KOG1633 F-box protein JEMMA an 26.7 64 0.0014 32.6 3.3 78 96-174 141-233 (776)
161 KOG1356 Putative transcription 25.6 25 0.00055 35.5 0.3 25 138-162 800-824 (889)
162 PF10731 Anophelin: Thrombin i 23.2 90 0.002 21.2 2.5 14 1-14 1-14 (65)
163 PF01987 AIM24: Mitochondrial 22.4 1.8E+02 0.0039 23.8 4.8 43 114-159 131-173 (215)
164 TIGR02408 ectoine_ThpD ectoine 21.0 1.2E+02 0.0026 26.2 3.6 37 138-174 212-250 (277)
165 PF08279 HTH_11: HTH domain; 20.2 98 0.0021 19.4 2.2 24 187-210 11-34 (55)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.95 E-value=4e-27 Score=212.50 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=141.0
Q ss_pred CCCCCCccchhhhccccCCCCccCCCCceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEE
Q 047141 46 MDPKLAQADHFVFSGLHVAGNTSNPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEV 125 (215)
Q Consensus 46 k~~~~~~~~dF~f~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~ 125 (215)
+.+..-.+..|+|+....++. ...|++++.+++.+||++++ +++++++++||++.++|||++++|+.||++|++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~p~--~~~gG~~~~~~~~~~p~~~~--~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~ 279 (367)
T TIGR03404 204 TGPAGEVPGPFTYHLSEQKPK--QVPGGTVRIADSTNFPVSKT--IAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARM 279 (367)
T ss_pred cCCCCCCCccEEEEhhhCCce--ecCCceEEEEChhhccCcce--EEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEE
Confidence 445555666799998777764 36778899999999999885 79999999999999999999999999999999999
Q ss_pred EEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceeeecchhccCCCCCCHHHHHHHcCCCH
Q 047141 126 GFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIADDLLAKAFQVDK 205 (215)
Q Consensus 126 ~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~~f~~~p~~p~~vla~af~~~~ 205 (215)
++.+++ ++...+.+++||+++||+|..|+++|.|+++++++++|++..++.+.+++++ +. +|++||+++|++++
T Consensus 280 ~v~d~~--g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l-~~---~p~~vl~~~~~~~~ 353 (367)
T TIGR03404 280 TVFAAG--GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWL-AL---TPPQLVAAHLNLDD 353 (367)
T ss_pred EEEecC--CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHH-hh---CCHHHHHHHhCcCH
Confidence 998765 4445789999999999999999999999999999999999999999998774 65 99999999999999
Q ss_pred HHHHHhhhc
Q 047141 206 SVVGQLQTK 214 (215)
Q Consensus 206 ~~v~~lk~~ 214 (215)
+++++||+.
T Consensus 354 ~~~~~l~~~ 362 (367)
T TIGR03404 354 EVIDSLKKE 362 (367)
T ss_pred HHHHhcccc
Confidence 999999853
No 2
>PLN00212 glutelin; Provisional
Probab=99.94 E-value=1.3e-25 Score=207.96 Aligned_cols=145 Identities=21% Similarity=0.385 Sum_probs=128.7
Q ss_pred CCccCCCCceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCC
Q 047141 65 GNTSNPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKG 144 (215)
Q Consensus 65 ~~~~~~~g~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~G 144 (215)
.++.++.+++++.+++.++|+|+++++++.+++|.||++.+||||++|+|++||++|+++++++++++ ++++...|++|
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g-~~vf~~~L~~G 400 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNG-KTVFNGVLRPG 400 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCC-CEEEEEEEcCC
Confidence 35568899999999999999999999999999999999999999999999999999999999998763 78899999999
Q ss_pred cEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceeeec--chhccCCCCCCHHHHHHHcCCCHHHHHHhhhc
Q 047141 145 DVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIA--NTVFGSNPAIADDLLAKAFQVDKSVVGQLQTK 214 (215)
Q Consensus 145 Dv~v~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~--~~~f~~~p~~p~~vla~af~~~~~~v~~lk~~ 214 (215)
|+++||+|.+|.... +++...+++..++.++-...++ .++|++ ||.+||++||+++++++++||.+
T Consensus 401 dvfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n 468 (493)
T PLN00212 401 QLLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNN 468 (493)
T ss_pred CEEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhc
Confidence 999999999998755 4666888877766655333443 789997 99999999999999999999875
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=1.7e-23 Score=188.94 Aligned_cols=135 Identities=25% Similarity=0.320 Sum_probs=119.5
Q ss_pred CCCceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEE
Q 047141 70 PLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVF 149 (215)
Q Consensus 70 ~~g~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~ 149 (215)
..|++++.++..+||++++ +++.+++++||++.++|||. +.|++||++|++++++++++ ++.+.+.|++||+++|
T Consensus 48 ~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~--g~~~~~~L~~GD~~~f 122 (367)
T TIGR03404 48 ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDEN--GRNYIDDVGAGDLWYF 122 (367)
T ss_pred ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCC--CcEEEeEECCCCEEEE
Confidence 3688999999999999997 59999999999999999996 68999999999999999865 6777778999999999
Q ss_pred cCCCeEEEEeCCCCcEEEEEEEcCCC---CceeeecchhccCCCCCCHHHHHHHcCCCHHHHHHhhhc
Q 047141 150 PVGLIHFQRNVGHGNAFSISGLSSQN---PGVITIANTVFGSNPAIADDLLAKAFQVDKSVVGQLQTK 214 (215)
Q Consensus 150 P~G~~H~~~N~g~~~a~~i~~~~s~~---pg~~~~~~~~f~~~p~~p~~vla~af~~~~~~v~~lk~~ 214 (215)
|+|.+|+++|.+ +++.++.+|++.. +..+.++++ |++ +|++||+++|++|++++++|+++
T Consensus 123 P~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~~---~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 123 PPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LAH---TPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred CCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HHh---CCHHHHHHHhCCCHHHHHhcccc
Confidence 999999999995 5688888887653 567777675 677 99999999999999999999864
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.90 E-value=1.6e-23 Score=165.85 Aligned_cols=127 Identities=35% Similarity=0.496 Sum_probs=107.1
Q ss_pred ccCCCCceEEEeeeccCCCCCccc-EEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCC-----ceEEEE
Q 047141 67 TSNPLGSRVTPVTVAQIPGLNTLG-IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDN-----RLISKV 140 (215)
Q Consensus 67 ~~~~~g~~v~~~~~~~~P~l~~lg-vs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~-----k~~~~~ 140 (215)
..+..+++++.++..++|++.+++ +.+.+..++||++..|||| ++.|+.||++|+++++++.++ + +....+
T Consensus 9 ~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~--~~~~~~~~~~~~ 85 (144)
T PF00190_consen 9 RVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPG--GPQEEFRDFSQK 85 (144)
T ss_dssp EEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETT--CSSSEEEEEEEE
T ss_pred cccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecC--Cccccceeeece
Confidence 345678899999999999666655 4555566799999999999 899999999999999999875 3 344566
Q ss_pred --ecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceeeecchhccCCCCCCHHHHHHHcCCCHHHH
Q 047141 141 --LQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIADDLLAKAFQVDKSVV 208 (215)
Q Consensus 141 --L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~~f~~~p~~p~~vla~af~~~~~~v 208 (215)
+++||++++|+|.+||+.|.++++...+.+|.+.+|... +|+++++++|+++++++
T Consensus 86 v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 86 VRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred eeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 999999999999999999999888888888888877654 89999999999999886
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.87 E-value=1.2e-20 Score=149.57 Aligned_cols=135 Identities=39% Similarity=0.653 Sum_probs=117.2
Q ss_pred CCCCceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEE
Q 047141 69 NPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFV 148 (215)
Q Consensus 69 ~~~g~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v 148 (215)
+..|++++.++..++|.+++.++.+.+++++||+..++|||+++.|++||++|++++.+.+.. +++.+...+++||+++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~-~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPN-GNKVYDARLREGDVFV 86 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCC-CCeEEEEEecCCCEEE
Confidence 567788999999999999999999999999999999999999889999999999999987652 1355689999999999
Q ss_pred EcCCCeEEEEeCCCCcEEEEEEEcCCCCceee-ec--chhccCCCCCCHHHHHHHcCCCHHHH
Q 047141 149 FPVGLIHFQRNVGHGNAFSISGLSSQNPGVIT-IA--NTVFGSNPAIADDLLAKAFQVDKSVV 208 (215)
Q Consensus 149 ~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~-~~--~~~f~~~p~~p~~vla~af~~~~~~v 208 (215)
+|+|..|+..|.+++++++++ +.+++|.... ++ .++|++ +++++++++|+++++++
T Consensus 87 ip~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 87 VPQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLRG---LPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ECCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhhc---CCHHHHHHHhCcChHHc
Confidence 999999999999999999995 6666665432 21 578887 99999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.84 E-value=6.6e-20 Score=170.09 Aligned_cols=140 Identities=19% Similarity=0.361 Sum_probs=115.8
Q ss_pred CCCCceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecC-C---------------
Q 047141 69 NPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSN-P--------------- 132 (215)
Q Consensus 69 ~~~g~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~-~--------------- 132 (215)
...||.+..++ .+-+.|.+.|+++.|++++|+|+.+||+| ++.+++||++|++.++++.++ +
T Consensus 59 ~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~ 136 (493)
T PLN00212 59 RSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQ 136 (493)
T ss_pred cccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccc
Confidence 45677666666 66799999999999999999999999999 589999999999999999631 0
Q ss_pred -------CCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCc--------eeeec---------------
Q 047141 133 -------DNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPG--------VITIA--------------- 182 (215)
Q Consensus 133 -------~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~s~~pg--------~~~~~--------------- 182 (215)
+.+...+.|++||++++|+|++||++|.|+++++++++++..++. .+.++
T Consensus 137 ~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~ 216 (493)
T PLN00212 137 SQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIE 216 (493)
T ss_pred ccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCcccccccccccc
Confidence 001123699999999999999999999999999999988654422 33333
Q ss_pred ----chhccCCCCCCHHHHHHHcCCCHHHHHHhhh
Q 047141 183 ----NTVFGSNPAIADDLLAKAFQVDKSVVGQLQT 213 (215)
Q Consensus 183 ----~~~f~~~p~~p~~vla~af~~~~~~v~~lk~ 213 (215)
.++|++ +++++|+.||+++.++++||++
T Consensus 217 ~~~~~nifsG---F~~e~La~Afnv~~e~~~klq~ 248 (493)
T PLN00212 217 QHSGQNIFSG---FSTELLSEALGINAQVAKRLQS 248 (493)
T ss_pred ccccCchhhc---CCHHHHHHHHCCCHHHHHHHhc
Confidence 349998 9999999999999999999975
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.76 E-value=8.9e-18 Score=139.40 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=125.4
Q ss_pred ccchhhhccccCCCCccCCCCceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCCCCcE--EEEEEEcEEEEEEEe
Q 047141 52 QADHFVFSGLHVAGNTSNPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATE--ILTVIEGSLEVGFVT 129 (215)
Q Consensus 52 ~~~dF~f~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~E--i~yVl~G~~~~~~~~ 129 (215)
..+||+|......+.. .++.+.......+|+- .-..+.+.||++...||||++.| +.||++|++++-+..
T Consensus 49 ~~~~~~yel~~~~~~~---~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPGE---RGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeecccccc---cCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 6788888876554443 2888999999999988 45667899999999999999999 999999999998877
Q ss_pred cCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceeeecchhccCCCCCCHHHHHHHcCCCHHHHH
Q 047141 130 SNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITIANTVFGSNPAIADDLLAKAFQVDKSVVG 209 (215)
Q Consensus 130 ~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~~f~~~p~~p~~vla~af~~~~~~v~ 209 (215)
++ ++++...+++||+++||++..|+..|+|+++++++.++....+....+..+.++ ++..+++..++.+.+.++
T Consensus 121 ~~--G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~D 194 (209)
T COG2140 121 PE--GEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYVD 194 (209)
T ss_pred CC--CcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCccccc
Confidence 76 678899999999999999999999999999999999998887777776665544 788888888888877777
Q ss_pred Hhhhc
Q 047141 210 QLQTK 214 (215)
Q Consensus 210 ~lk~~ 214 (215)
.++.+
T Consensus 195 ~p~~~ 199 (209)
T COG2140 195 VPRIK 199 (209)
T ss_pred Ccccc
Confidence 66543
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.48 E-value=1.4e-13 Score=94.99 Aligned_cols=70 Identities=29% Similarity=0.449 Sum_probs=63.3
Q ss_pred EEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 047141 95 RIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGL 171 (215)
Q Consensus 95 ~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~ 171 (215)
+++++||+..++|+|+...|++||++|++++.+ + ++ ...+++||.+++|+|..|...|.+++++++++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~----~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-D----GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE-T----TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE-c----cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999975599999999999985 2 34 7899999999999999999999999999999875
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.41 E-value=2.8e-12 Score=99.58 Aligned_cols=86 Identities=23% Similarity=0.396 Sum_probs=73.7
Q ss_pred ccCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeC
Q 047141 81 AQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNV 160 (215)
Q Consensus 81 ~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~ 160 (215)
.-.+...+..+.+.++.++||+..++|+||...+.+||++|++++++.+ + .+.+++||++++|+|..|+..|.
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g-----~--~~~l~~Gd~i~ip~g~~H~~~a~ 105 (131)
T COG1917 33 RVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG-----E--KKELKAGDVIIIPPGVVHGLKAV 105 (131)
T ss_pred eeccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecC-----C--ceEecCCCEEEECCCCeeeeccC
Confidence 3455556667889999999999999999995589999999999999852 2 68999999999999999999999
Q ss_pred CCCcEEEEEEEcC
Q 047141 161 GHGNAFSISGLSS 173 (215)
Q Consensus 161 g~~~a~~i~~~~s 173 (215)
++++...++++..
T Consensus 106 ~~~~~~~l~v~~~ 118 (131)
T COG1917 106 EDEPMVLLLVFPL 118 (131)
T ss_pred CCCceeEEEEeee
Confidence 9887777777655
No 10
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.38 E-value=6.5e-12 Score=97.63 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=70.8
Q ss_pred ccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEE-EEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 047141 89 LGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVG-FVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFS 167 (215)
Q Consensus 89 lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~-~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 167 (215)
.++++.++.++||+..+.|+|.. .|++||++|++++. +.+ ++ .+.|++||++++|++..|.+.|. +++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~----g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~ 103 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT----GE--VHPIRPGTMYALDKHDRHYLRAG--EDMRL 103 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC----CE--EEEeCCCeEEEECCCCcEEEEcC--CCEEE
Confidence 45789999999999999999975 79999999999998 522 23 68999999999999999999997 89999
Q ss_pred EEEEcCCCCcee
Q 047141 168 ISGLSSQNPGVI 179 (215)
Q Consensus 168 i~~~~s~~pg~~ 179 (215)
+++++..-+|..
T Consensus 104 l~v~tP~~~~~~ 115 (125)
T PRK13290 104 VCVFNPPLTGRE 115 (125)
T ss_pred EEEECCCCCCcc
Confidence 999986665543
No 11
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=7.9e-12 Score=97.14 Aligned_cols=82 Identities=27% Similarity=0.255 Sum_probs=72.9
Q ss_pred ccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 047141 89 LGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSI 168 (215)
Q Consensus 89 lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i 168 (215)
...++.++.+.||+...+|.|.+.+|+.||++|++.+.+. ++ ...|++||++++|+|..|...|.|..++.++
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~-----~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~li 106 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG-----GE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLI 106 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC-----CE--EEEecCCCEEEECCCCcEEEEcCCCcceEEE
Confidence 3568999999999998888888889999999999999884 33 7899999999999999999999999999999
Q ss_pred EEEcCCCCc
Q 047141 169 SGLSSQNPG 177 (215)
Q Consensus 169 ~~~~s~~pg 177 (215)
++......+
T Consensus 107 ei~~p~~~~ 115 (127)
T COG0662 107 EVQSPPYLG 115 (127)
T ss_pred EEecCCcCC
Confidence 997665444
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.33 E-value=3.7e-11 Score=99.67 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=76.1
Q ss_pred CCCCCcccEEEEEEEEcCCcc------cCCccCCCC--cEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCe
Q 047141 83 IPGLNTLGIALARIDYAPWGV------VPPHVHPRA--TEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLI 154 (215)
Q Consensus 83 ~P~l~~lgvs~~~~~l~pgg~------~ppH~Hp~a--~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~ 154 (215)
.|.++.-++.+....+.||.. .+.|+|+.. .|+.||++|++.+.+.+.+ +......+++||+++||+|..
T Consensus 60 ~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~--G~~~~~~v~pGd~v~IPpg~~ 137 (191)
T PRK04190 60 EPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE--GEARWIEMEPGTVVYVPPYWA 137 (191)
T ss_pred cCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC--CcEEEEEECCCCEEEECCCCc
Confidence 445666679999999999996 567999754 5999999999999886554 334578999999999999999
Q ss_pred EEEEeCCCCcEEEEEEEcCC
Q 047141 155 HFQRNVGHGNAFSISGLSSQ 174 (215)
Q Consensus 155 H~~~N~g~~~a~~i~~~~s~ 174 (215)
|...|.|++++++++++...
T Consensus 138 H~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 138 HRSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EEeEECCCCCEEEEEEEcCC
Confidence 99999999999999988654
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.27 E-value=3e-11 Score=96.05 Aligned_cols=92 Identities=23% Similarity=0.240 Sum_probs=75.1
Q ss_pred cCCCCCcccEEEEEEEEcCCcc-cCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCC--CeEEEE
Q 047141 82 QIPGLNTLGIALARIDYAPWGV-VPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVG--LIHFQR 158 (215)
Q Consensus 82 ~~P~l~~lgvs~~~~~l~pgg~-~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G--~~H~~~ 158 (215)
.+-||...||-+.+ ++||+. ...|||...+|++||++|++++.+.+ . ...|++||++-||+| ..|.+.
T Consensus 35 ~~~Gl~~fGvn~~~--v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~-----~--e~~lrpGD~~gFpAG~~~aHhli 105 (161)
T COG3837 35 DALGLKRFGVNLEI--VEPGGESSLRHWHSAEDEFVYILEGEGTLREDG-----G--ETRLRPGDSAGFPAGVGNAHHLI 105 (161)
T ss_pred hhcChhhcccceEE--eCCCCccccccccccCceEEEEEcCceEEEECC-----e--eEEecCCceeeccCCCcceeEEe
Confidence 45677776666654 789986 68899999999999999999998743 2 589999999999999 899999
Q ss_pred eCCCCcEEEEEEEcCCCCceeeec
Q 047141 159 NVGHGNAFSISGLSSQNPGVITIA 182 (215)
Q Consensus 159 N~g~~~a~~i~~~~s~~pg~~~~~ 182 (215)
|.++..++++++-+...-.....+
T Consensus 106 N~s~~~~~yL~vG~r~~~d~i~YP 129 (161)
T COG3837 106 NRSDVILRYLEVGTREPDDIITYP 129 (161)
T ss_pred ecCCceEEEEEeccccccceeecC
Confidence 999999999998765544444443
No 14
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.14 E-value=6.2e-10 Score=91.48 Aligned_cols=76 Identities=24% Similarity=0.265 Sum_probs=64.7
Q ss_pred ccEEEEEEEEcCCccc-CCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 047141 89 LGIALARIDYAPWGVV-PPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFS 167 (215)
Q Consensus 89 lgvs~~~~~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 167 (215)
..+.+....++||+.. +.|+|+ ..|++||++|++++.+. ++ .+.|++||.++||++.+|.+.|.+++++.+
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~~-----~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~ 176 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTIN-----GQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRI 176 (185)
T ss_pred CeeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEEC-----CE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEE
Confidence 3456677788999864 567787 59999999999999883 33 689999999999999999999999999999
Q ss_pred EEEEc
Q 047141 168 ISGLS 172 (215)
Q Consensus 168 i~~~~ 172 (215)
+++..
T Consensus 177 l~~~~ 181 (185)
T PRK09943 177 ISAHT 181 (185)
T ss_pred EEEeC
Confidence 99864
No 15
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.12 E-value=5.5e-10 Score=104.20 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=70.3
Q ss_pred cEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 047141 90 GIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSIS 169 (215)
Q Consensus 90 gvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~ 169 (215)
++.+.++.++||+..+.|+|++..|..||++|++++.+. ++ .+.|++||++++|+|..|.+.|.|++++++++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d-----g~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~ 447 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG-----DE--TLLLTENESTYIPLGVIHRLENPGKIPLELIE 447 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC-----CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 568889999999988889998889999999999999873 34 68999999999999999999999999999999
Q ss_pred EEcCC
Q 047141 170 GLSSQ 174 (215)
Q Consensus 170 ~~~s~ 174 (215)
+.+.+
T Consensus 448 v~~~~ 452 (468)
T TIGR01479 448 VQSGS 452 (468)
T ss_pred EEcCC
Confidence 98643
No 16
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=5.3e-10 Score=85.16 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=73.9
Q ss_pred cEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 047141 90 GIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSIS 169 (215)
Q Consensus 90 gvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~ 169 (215)
++.+..+++.||+....|.|.+-+-.+||++|+....+.+ .-.+..+.++||.|+||+|++|.-.|.+++++..+.
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~----rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vI 120 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGN----RLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVI 120 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeecc----ceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEE
Confidence 6788889999999999999998777899999999998853 223478899999999999999999999999999998
Q ss_pred EEcCCCCce
Q 047141 170 GLSSQNPGV 178 (215)
Q Consensus 170 ~~~s~~pg~ 178 (215)
+.+..+|..
T Consensus 121 aRsDp~~~E 129 (142)
T COG4101 121 ARSDPNPQE 129 (142)
T ss_pred EccCCCCCc
Confidence 888766643
No 17
>PRK11171 hypothetical protein; Provisional
Probab=99.12 E-value=1.4e-09 Score=94.55 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=80.6
Q ss_pred CCCCccchhhhccccCCCCccCCCCceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCC-CCcEEEEEEEcEEEEE
Q 047141 48 PKLAQADHFVFSGLHVAGNTSNPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHP-RATEILTVIEGSLEVG 126 (215)
Q Consensus 48 ~~~~~~~dF~f~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp-~a~Ei~yVl~G~~~~~ 126 (215)
.+.+++++.+.+.+..- .+..++.+.. | -...++.+.+++++||+....|.|+ ...|++||++|++++.
T Consensus 28 ~a~~~p~~~v~~~lp~~------~~~~~~~L~~---~-~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~ 97 (266)
T PRK11171 28 YAVIPPDDIVTSVLPGW------ENTRAWVLAR---P-GLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLT 97 (266)
T ss_pred eEEECCcCEEeecCCCC------CCeEEEEEeC---C-CCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEE
Confidence 45556666666544221 2233333332 2 2245678999999999987777765 5689999999999998
Q ss_pred EEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 047141 127 FVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLS 172 (215)
Q Consensus 127 ~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~ 172 (215)
+. ++ ++.|++||.++||++..|.+.|.|+++++++++..
T Consensus 98 ~~-----g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~ 136 (266)
T PRK11171 98 LE-----GK--THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRK 136 (266)
T ss_pred EC-----CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEc
Confidence 73 34 78999999999999999999999999999998863
No 18
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.10 E-value=7.9e-10 Score=103.32 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=69.6
Q ss_pred ccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 047141 89 LGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSI 168 (215)
Q Consensus 89 lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i 168 (215)
.++.+.++++.||+....|+|....|..||++|++++.+. ++ .+.|++||.++||+|.+|.+.|.|+++++++
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id-----g~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI 455 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID-----GD--IKLLGENESIYIPLGATHCLENPGKIPLDLI 455 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC-----CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 3578899999999987778887778999999999999884 34 7899999999999999999999999999999
Q ss_pred EEEcC
Q 047141 169 SGLSS 173 (215)
Q Consensus 169 ~~~~s 173 (215)
++...
T Consensus 456 ~V~~g 460 (478)
T PRK15460 456 EVRSG 460 (478)
T ss_pred EEEcC
Confidence 98753
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.01 E-value=3.2e-09 Score=85.07 Aligned_cols=76 Identities=26% Similarity=0.312 Sum_probs=69.4
Q ss_pred cEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 047141 90 GIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSIS 169 (215)
Q Consensus 90 gvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~ 169 (215)
+..+-++.+.||....+|.|....|..+|++|++.+.+. ++ .+.+++||++++|+|..|.+.|.|+.++.++.
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~-----~~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IE 134 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD-----DE--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIE 134 (151)
T ss_pred CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEEC-----CE--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEE
Confidence 568899999999999999999889999999999999873 33 68999999999999999999999999999998
Q ss_pred EEc
Q 047141 170 GLS 172 (215)
Q Consensus 170 ~~~ 172 (215)
+-.
T Consensus 135 Vq~ 137 (151)
T PF01050_consen 135 VQT 137 (151)
T ss_pred Eec
Confidence 754
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.98 E-value=4e-09 Score=91.50 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=63.4
Q ss_pred cEEEEEEEEcCCcccCC-ccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 047141 90 GIALARIDYAPWGVVPP-HVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSI 168 (215)
Q Consensus 90 gvs~~~~~l~pgg~~pp-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i 168 (215)
++.+.+++++||+..+. |.|. .+|.+||++|++.+... ++ ...+++||++++|++.+|+.+|.|+++.+++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~~-----g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l 249 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNLD-----NN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYL 249 (260)
T ss_pred CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEEC-----CE--EEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence 56788899999999986 5555 58899999999999773 34 7899999999999999999999999999988
Q ss_pred EE
Q 047141 169 SG 170 (215)
Q Consensus 169 ~~ 170 (215)
.-
T Consensus 250 ~y 251 (260)
T TIGR03214 250 LY 251 (260)
T ss_pred EE
Confidence 53
No 21
>PRK11171 hypothetical protein; Provisional
Probab=98.91 E-value=1.1e-08 Score=89.02 Aligned_cols=75 Identities=16% Similarity=0.085 Sum_probs=65.6
Q ss_pred cEEEEEEEEcCCcccCCc-cCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 047141 90 GIALARIDYAPWGVVPPH-VHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSI 168 (215)
Q Consensus 90 gvs~~~~~l~pgg~~ppH-~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i 168 (215)
.+.+..++++||+..+.| +|. ..|.+||++|++++.+. ++ .+.|++||++.++.+..|++.|.|+++++++
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~-~ee~i~Vl~G~~~~~~~-----~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl 254 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHV-MEHGLYVLEGKGVYRLN-----ND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYL 254 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCC-ceEEEEEEeCEEEEEEC-----CE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEE
Confidence 368899999999998885 555 69999999999999873 34 7899999999999999999999999999998
Q ss_pred EEEc
Q 047141 169 SGLS 172 (215)
Q Consensus 169 ~~~~ 172 (215)
..-+
T Consensus 255 ~~k~ 258 (266)
T PRK11171 255 LYKD 258 (266)
T ss_pred EEcc
Confidence 7654
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.91 E-value=1.5e-08 Score=87.93 Aligned_cols=76 Identities=17% Similarity=0.087 Sum_probs=65.3
Q ss_pred cEEEEEEEEcCCccc-CCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 047141 90 GIALARIDYAPWGVV-PPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSI 168 (215)
Q Consensus 90 gvs~~~~~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i 168 (215)
.+.+..++++||+.. .+|+|+...|++||++|++++.+. ++ .+.|++||.+++|+|..|.+.|.++++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~-----g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l 129 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAE-----GE--THELREGGYAYLPPGSKWTLANAQAEDARFF 129 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEEC-----CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 478889999998764 456677668999999999999873 33 6899999999999999999999999999999
Q ss_pred EEEc
Q 047141 169 SGLS 172 (215)
Q Consensus 169 ~~~~ 172 (215)
++-.
T Consensus 130 ~v~k 133 (260)
T TIGR03214 130 LYKK 133 (260)
T ss_pred EEEe
Confidence 8764
No 23
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.72 E-value=2.2e-07 Score=76.51 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=58.0
Q ss_pred CCcccEEEEEEEEcCCcc------cCCccCCC------CcEEEEEEEcEEEEEEEecCCCC----ceEEEEecCCcEEEE
Q 047141 86 LNTLGIALARIDYAPWGV------VPPHVHPR------ATEILTVIEGSLEVGFVTSNPDN----RLISKVLQKGDVFVF 149 (215)
Q Consensus 86 l~~lgvs~~~~~l~pgg~------~ppH~Hp~------a~Ei~yVl~G~~~~~~~~~~~~~----k~~~~~L~~GDv~v~ 149 (215)
+...++......+.||.+ ..-|+|+. ..|+.+|++|++.+.+-+.+ + +.+...+++||+++|
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~--~~~~~~~~~v~~~~G~~v~I 122 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEE--GDDVGDVIAVEAKPGDVVYI 122 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TT--S-----EEEEEE-TTEEEEE
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecC--CCcceeEEEEEeCCCCEEEE
Confidence 444567888888999864 35699997 89999999999999987765 4 567789999999999
Q ss_pred cCCCeEEEEeCCCCcEEEEEEEcCC
Q 047141 150 PVGLIHFQRNVGHGNAFSISGLSSQ 174 (215)
Q Consensus 150 P~G~~H~~~N~g~~~a~~i~~~~s~ 174 (215)
|++..|...|+|++++++.....+.
T Consensus 123 Pp~yaH~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 123 PPGYAHRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp -TT-EEEEEE-SSS-EEEEEEEETT
T ss_pred CCCceEEEEECCCCcEEEEEEEecC
Confidence 9999999999999999998887643
No 24
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.72 E-value=1.3e-07 Score=77.32 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=57.9
Q ss_pred EEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 047141 94 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLS 172 (215)
Q Consensus 94 ~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~ 172 (215)
..+.=.||.....|+|+ ..|++|+++|++++.+.+. ++.....|++||++++|+|+.|..+.. +..+.+.+=.
T Consensus 37 VmvvgGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~---g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~LviE~ 109 (177)
T PRK13264 37 VMVVGGPNARTDFHYDP-GEEFFYQLEGDMYLKVQED---GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVIER 109 (177)
T ss_pred EEEEccCCcccccccCC-CceEEEEECCeEEEEEEcC---CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEEEe
Confidence 33444788888999999 6999999999999999874 444578999999999999999998663 4455554433
No 25
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.70 E-value=3.1e-07 Score=72.75 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=56.5
Q ss_pred CCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCC--CCceEEEEecCCcEEEEcCCCeEEEEeCC
Q 047141 84 PGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNP--DNRLISKVLQKGDVFVFPVGLIHFQRNVG 161 (215)
Q Consensus 84 P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~--~~k~~~~~L~~GDv~v~P~G~~H~~~N~g 161 (215)
-|++. +.+..-++.||...|+|-|. .+|+++|++|+++..+..... .++...+.+.+++.+.||.+..|...|.+
T Consensus 39 hGmke--vEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 39 HGMKE--VEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp H--SS--EEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred cCcee--eeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 45554 45666679999999999998 799999999999998875430 13445789999999999999999999999
Q ss_pred C-CcEEEEEEEcCCCCcee-eecch
Q 047141 162 H-GNAFSISGLSSQNPGVI-TIANT 184 (215)
Q Consensus 162 ~-~~a~~i~~~~s~~pg~~-~~~~~ 184 (215)
+ +++.++++.+ .-|-.+ ...++
T Consensus 116 e~eDlqvlViiS-rpPvkvf~y~dw 139 (167)
T PF02041_consen 116 EHEDLQVLVIIS-RPPVKVFIYDDW 139 (167)
T ss_dssp SSS-EEEEEEEE-SSS--EEEESST
T ss_pred CCcceEEEEEec-CCCeEEEEeccc
Confidence 4 8888888765 445444 44343
No 26
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.66 E-value=1.9e-07 Score=75.23 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=53.7
Q ss_pred cCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 047141 99 APWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGL 171 (215)
Q Consensus 99 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~ 171 (215)
.||....+|.|+ ..|++|+++|++.+.+.+. ++.....|++||++++|+|+.|..... +.++.+.+=
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~---g~~~~v~L~eGd~flvP~gvpHsP~r~--~~t~~LvIE 102 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE---GKREDVPIREGDIFLLPPHVPHSPQRP--AGSIGLVIE 102 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC---CcEEEEEECCCCEEEeCCCCCcccccC--CCcEEEEEE
Confidence 666677889988 6999999999999998764 444579999999999999999998764 334444443
No 27
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.47 E-value=6.2e-07 Score=67.62 Aligned_cols=65 Identities=25% Similarity=0.216 Sum_probs=47.5
Q ss_pred CCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 047141 100 PWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLS 172 (215)
Q Consensus 100 pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~ 172 (215)
++...++|+|+ ..|+.||++|++++.+. ++ .+.+++||++++|+|.+|.....++++...+.+.-
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~~-----~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHID-----GQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEET-----TE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEEC-----CE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 45567899999 59999999999999772 34 78999999999999999999888877777776653
No 28
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.44 E-value=1.9e-06 Score=62.64 Aligned_cols=72 Identities=29% Similarity=0.374 Sum_probs=54.0
Q ss_pred cEEEEEEEEcCCcccCC-ccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 047141 90 GIALARIDYAPWGVVPP-HVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSI 168 (215)
Q Consensus 90 gvs~~~~~l~pgg~~pp-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i 168 (215)
.++...++++||+.-++ +.+. ..-++||++|.+++.+.+ . +..+.+|+++.+|+|-.-.++|.++++|+++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~-~~~vF~V~~G~v~Vti~~-----~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRD-NTMVFYVIKGKVEVTIHE-----T--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--S-EEEEEEEEESEEEEEETT-----E--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCC-cEEEEEEEeCEEEEEEcC-----c--EEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence 45788999999998654 5554 588999999999999832 2 6899999999999999999999999999887
Q ss_pred E
Q 047141 169 S 169 (215)
Q Consensus 169 ~ 169 (215)
-
T Consensus 83 F 83 (85)
T PF11699_consen 83 F 83 (85)
T ss_dssp E
T ss_pred E
Confidence 4
No 29
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.42 E-value=1.3e-06 Score=63.78 Aligned_cols=81 Identities=26% Similarity=0.432 Sum_probs=57.9
Q ss_pred CCceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEc
Q 047141 71 LGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFP 150 (215)
Q Consensus 71 ~g~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P 150 (215)
.|.++..+.... . ..|..+..+.++||+..|.|.|+ +.|.+|||+|++.. . + ..+.+||.++.|
T Consensus 8 ~Gv~~~~L~~~~--~--~~g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~---~----~~~~~G~~~~~p 71 (91)
T PF12973_consen 8 PGVSVKPLHRDE--G--ETGERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----G---D----GRYGAGDWLRLP 71 (91)
T ss_dssp TTEEEEEEEECS--S--STTEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----T---T----CEEETTEEEEE-
T ss_pred CCEEEEEeccCC--C--cccCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----C---C----ccCCCCeEEEeC
Confidence 455555554322 1 22567888889999999999999 58888999999984 2 1 246999999999
Q ss_pred CCCeEEEEeCCCCcEEEEE
Q 047141 151 VGLIHFQRNVGHGNAFSIS 169 (215)
Q Consensus 151 ~G~~H~~~N~g~~~a~~i~ 169 (215)
+|..|.... ++.+.++.
T Consensus 72 ~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 72 PGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TTEEEEEEE--SSCEEEEE
T ss_pred CCCccccCc--CCCEEEEE
Confidence 999999874 56676654
No 30
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.41 E-value=2.8e-06 Score=68.49 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=51.3
Q ss_pred cCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCc
Q 047141 104 VPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPG 177 (215)
Q Consensus 104 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~s~~pg 177 (215)
...|.|.+ .|+-|+++|++.+.+...+ ++.....+++||.+++|+|+.||+.-..+...+++=.|. ..||
T Consensus 85 ~~EH~H~d-eEvR~i~~G~g~Fdvr~~~--~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~-~~~g 154 (157)
T PF03079_consen 85 FEEHTHED-EEVRYIVDGSGYFDVRDGD--DVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK-DEPG 154 (157)
T ss_dssp CS-EEESS--EEEEEEECEEEEEEE-TT--CEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES-SCGG
T ss_pred heeEecCh-heEEEEeCcEEEEEEEcCC--CEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec-CCCC
Confidence 47899995 9999999999999998764 565568999999999999999999766566677766664 3444
No 31
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.35 E-value=1.7e-06 Score=73.13 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=61.9
Q ss_pred EEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 047141 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISG 170 (215)
Q Consensus 91 vs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~ 170 (215)
..+..+.++||+..|.|.|. +.|+.+|++|++. ++ ...+.+||.+..|.|..|...+.++++++.+++
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de-------~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v 194 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DE-------TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAV 194 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cC-------CCccCCCeEEECCCCCCcCcccCCCCCeEEEEE
Confidence 45677889999999999997 6999999999954 32 246899999999999999999999999999998
Q ss_pred EcCC
Q 047141 171 LSSQ 174 (215)
Q Consensus 171 ~~s~ 174 (215)
.+..
T Consensus 195 ~dap 198 (215)
T TIGR02451 195 LDAP 198 (215)
T ss_pred ecCC
Confidence 7654
No 32
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.32 E-value=8.4e-06 Score=69.17 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=52.7
Q ss_pred cccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 047141 88 TLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFS 167 (215)
Q Consensus 88 ~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 167 (215)
+-.|+...+.++. ...+||-+..|+.||++|++++.+. ++ ++.+++||+++||+|..|.+...+ .+.+
T Consensus 154 ~s~m~aGf~~~~~---~sf~wtl~~dEi~YVLEGe~~l~Id-----G~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRf 221 (233)
T PRK15457 154 GSSMAAGFMQWEN---AFFPWTLNYDEIDMVLEGELHVRHE-----GE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRF 221 (233)
T ss_pred CCceeeEEEEEec---CccceeccceEEEEEEEeEEEEEEC-----CE--EEEeCCCcEEEECCCCeEEecCCC--CeeE
Confidence 3345666666664 2344666679999999999999883 34 799999999999999995554443 5655
Q ss_pred EEEE
Q 047141 168 ISGL 171 (215)
Q Consensus 168 i~~~ 171 (215)
+.+.
T Consensus 222 lyV~ 225 (233)
T PRK15457 222 LYVA 225 (233)
T ss_pred EEEE
Confidence 5544
No 33
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.26 E-value=3.7e-06 Score=74.15 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=49.0
Q ss_pred EEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 96 IDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 96 ~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
-.-.|..+.++|||.. -|+.|+++|++.+.+. ++ ...+++||++++++|.+|.....++
T Consensus 31 ~~~~~~~m~~~HwH~e-~Ei~yv~~G~~~~~i~-----g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 31 EFRPPHIMPTSHWHGQ-VEVNVPFDGDVEYLIN-----NE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EeeCCCCCCCCCcccc-EEEEEecCCcEEEEEC-----CE--EEEEcCCcEEEEecCCcccccccCC
Confidence 3456677899999995 9999999999998773 34 7899999999999999998765444
No 34
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.16 E-value=1.7e-05 Score=64.16 Aligned_cols=73 Identities=18% Similarity=0.306 Sum_probs=60.1
Q ss_pred CCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceeee
Q 047141 105 PPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVITI 181 (215)
Q Consensus 105 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~ 181 (215)
.-|.|. ..|+-|++.|.+.+.+...+ ++++...+.+||.+.+|+|.-||+.-..+-..+++=.| ...+|.+-+
T Consensus 89 ~EH~H~-d~EvRy~vaG~GiF~v~~~d--~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF-~~~~gWVa~ 161 (181)
T COG1791 89 QEHLHT-DDEVRYFVAGEGIFDVHSPD--GKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLF-TEPEGWVAI 161 (181)
T ss_pred HHhccC-CceEEEEEecceEEEEECCC--CcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEe-eCCCCceee
Confidence 569998 59999999999999998875 78899999999999999999999966655666666666 456676543
No 35
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.15 E-value=7.3e-06 Score=64.18 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=52.4
Q ss_pred cCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 047141 104 VPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGL 171 (215)
Q Consensus 104 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~ 171 (215)
.--|+|.++.|++.|++|+..+++.+.+ +. ...+++||++++|+|+-|.- +..+.+..++..+
T Consensus 56 ~yHHYHs~aHEVl~vlrgqA~l~iGG~~--G~--el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaY 118 (163)
T COG4297 56 NYHHYHSGAHEVLGVLRGQAGLQIGGAD--GQ--ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAY 118 (163)
T ss_pred ccccccCCcceEEEEecceeEEEecCCC--Cc--eeeecCCCEEEEecCccccc-ccCCCCeEEEccc
Confidence 3568999999999999999999998765 45 67899999999999999984 5555666666665
No 36
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.09 E-value=6.1e-05 Score=58.17 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=72.4
Q ss_pred CcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEE
Q 047141 87 NTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAF 166 (215)
Q Consensus 87 ~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~ 166 (215)
.+.|.|+-...+.+|.....|+-. --|-+||++|++++...+. ++ .+.+++|.++...+.-.|+.+.. +++.
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~~---G~--~~~i~pGt~YaLd~hD~H~lra~--~dm~ 102 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLDT---GE--VHPIKPGTMYALDKHDRHYLRAK--TDMR 102 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEccC---Cc--EEEcCCCeEEecCCCccEEEEec--CCEE
Confidence 467899999999999999999876 4999999999999988754 45 78999999999999999999765 3999
Q ss_pred EEEEEcCCCCce
Q 047141 167 SISGLSSQNPGV 178 (215)
Q Consensus 167 ~i~~~~s~~pg~ 178 (215)
++|+||.+--|.
T Consensus 103 ~vCVFnPpltG~ 114 (126)
T PF06339_consen 103 LVCVFNPPLTGR 114 (126)
T ss_pred EEEEcCCCCcCc
Confidence 999998765443
No 37
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.07 E-value=1.9e-05 Score=70.91 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=63.0
Q ss_pred EEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 047141 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISG 170 (215)
Q Consensus 91 vs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~ 170 (215)
|.+..-.+.||...++|-|. +.-+.+|++|++.+..++ ++ ....++||+|++|.+..|...|.|++++..+..
T Consensus 81 l~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~----g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~ 153 (335)
T TIGR02272 81 LYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVD----GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDG 153 (335)
T ss_pred HHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEEC----CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEec
Confidence 34455568999999999998 689999999999655554 34 689999999999999999999999999887666
Q ss_pred Ec
Q 047141 171 LS 172 (215)
Q Consensus 171 ~~ 172 (215)
++
T Consensus 154 lD 155 (335)
T TIGR02272 154 LD 155 (335)
T ss_pred CC
Confidence 54
No 38
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.04 E-value=3.5e-05 Score=66.51 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=43.7
Q ss_pred CcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeC
Q 047141 101 WGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNV 160 (215)
Q Consensus 101 gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~ 160 (215)
+...++|||. ..|++||++|++++.+. ++ ...+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~-----~~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEIN-----GK--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEEC-----CE--EEEECCCcEEEeCCCCccceeee
Confidence 3356899998 59999999999998872 34 68999999999999999976443
No 39
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.01 E-value=2e-05 Score=68.53 Aligned_cols=62 Identities=23% Similarity=0.210 Sum_probs=48.6
Q ss_pred cEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCC
Q 047141 90 GIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVG 161 (215)
Q Consensus 90 gvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g 161 (215)
.+.+.+ ..+....++|||+ -.|++||++|++++.+. ++ .+.+++||++++|+|.+|.+...+
T Consensus 19 ~~~~~~--~~~~~~~~~H~H~-~~ei~~i~~G~~~~~i~-----~~--~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 19 PVAVTN--RYPQETFVEHTHQ-FCEIVIVWRGNGLHVLN-----DH--PYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred ceEEec--CCCCCCCcccccc-ceeEEEEecCceEEEEC-----Ce--eeeecCCeEEEEcCCCcccccccC
Confidence 344444 2344456799998 59999999999999873 34 789999999999999999986543
No 40
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.95 E-value=2.6e-05 Score=67.36 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=48.3
Q ss_pred CcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 047141 101 WGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSI 168 (215)
Q Consensus 101 gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i 168 (215)
+...++|||.+.-|++|+++|++++.+. ++ ...+++||++++|+|..|.....++.....+
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~-----~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i 93 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLD-----EH--EYSEYAPCFFLTPPSVPHGFVTDLDADGHVL 93 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEEC-----CE--EEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence 3457999997558999999999998773 34 6899999999999999999866554433333
No 41
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.95 E-value=2e-05 Score=69.13 Aligned_cols=116 Identities=21% Similarity=0.242 Sum_probs=85.3
Q ss_pred CCccchhhhccc----cCCCCccCCCCceEEEeeeccCCCCCccc-E----EEEEEEEcCCcccCCccCCCCcEEEEEEE
Q 047141 50 LAQADHFVFSGL----HVAGNTSNPLGSRVTPVTVAQIPGLNTLG-I----ALARIDYAPWGVVPPHVHPRATEILTVIE 120 (215)
Q Consensus 50 ~~~~~dF~f~~~----~~~~~~~~~~g~~v~~~~~~~~P~l~~lg-v----s~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~ 120 (215)
...+.-+.|.-+ -+.+......++ ++.+-..+-|+|++.. + .++.=-+.||.+.|.|-|. .+-+-||++
T Consensus 43 ~~vp~lW~~~~ir~ll~~sgeli~~~~a-~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvve 120 (351)
T COG3435 43 DCVPALWKYEEIRPLLLRSGELISAREA-VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVE 120 (351)
T ss_pred ccccccccHHHHHHHHHHhhhccCcccc-eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEe
Confidence 344444555432 233443233444 5556667779998874 1 1222247899999999998 699999999
Q ss_pred cEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcC
Q 047141 121 GSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSS 173 (215)
Q Consensus 121 G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~s 173 (215)
|++-+..++.+ ...+++||.++.|++..|..-|.|.+|++++-.++.
T Consensus 121 G~Ga~T~VdGe------r~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDi 167 (351)
T COG3435 121 GKGAYTVVDGE------RTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDI 167 (351)
T ss_pred ccceeEeecCc------eeeccCCCEEEccCceeccCCCCCCCceEEEcccch
Confidence 99999888742 578999999999999999999999999999987753
No 42
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.92 E-value=7e-05 Score=58.54 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=44.1
Q ss_pred EcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCc-EEEEcCCCeEEEEeCCCCcEEEEEEEcCC
Q 047141 98 YAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGD-VFVFPVGLIHFQRNVGHGNAFSISGLSSQ 174 (215)
Q Consensus 98 l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GD-v~v~P~G~~H~~~N~g~~~a~~i~~~~s~ 174 (215)
..+|....+|.|....|+++|++|+.++.+.+.. ......|...+ .+.+|+|+.|.+.|.+++ +++++ +.++
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~---~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv-~as~ 112 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR---EEEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLV-LASE 112 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-SS----EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEE-EESS
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecCC---CcEEEEECCCCeEEEECCchhhHhhccCCC-cEEEE-EcCC
Confidence 4455558999999999999999999999986643 32467777765 899999999999999877 66665 4444
No 43
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.92 E-value=4.5e-05 Score=67.39 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=45.9
Q ss_pred CCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 100 PWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 100 pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
|....++|||+ ..|++||++|++.+.+. ++ .+.+++||++++|+|..|......+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v~-----~~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVLN-----DR--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEEC-----CE--EEeecCCeEEEECCCCeecccccCC
Confidence 33446899998 69999999999998773 33 6899999999999999999866443
No 44
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.84 E-value=0.00024 Score=56.54 Aligned_cols=79 Identities=13% Similarity=0.284 Sum_probs=51.7
Q ss_pred EEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 047141 93 LARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLS 172 (215)
Q Consensus 93 ~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~ 172 (215)
+..+.=.|+...-.|.-+ +.|++|-++|...+.+++. ++.....+++||++..|++++|.-+-.. ..+-+++-.
T Consensus 35 ~VmvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~---g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr 108 (151)
T PF06052_consen 35 IVMVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED---GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIER 108 (151)
T ss_dssp EEEEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEET---TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE
T ss_pred EEEEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEeC---CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEe
Confidence 455566888888999998 6999999999999999885 5667899999999999999999987754 444444444
Q ss_pred CCCCc
Q 047141 173 SQNPG 177 (215)
Q Consensus 173 s~~pg 177 (215)
...+|
T Consensus 109 ~R~~~ 113 (151)
T PF06052_consen 109 KRPEG 113 (151)
T ss_dssp ---TT
T ss_pred ccCCC
Confidence 44444
No 45
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.83 E-value=3.3e-05 Score=66.67 Aligned_cols=73 Identities=29% Similarity=0.362 Sum_probs=46.7
Q ss_pred ccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 047141 89 LGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSI 168 (215)
Q Consensus 89 lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i 168 (215)
-|.+..|+++.+|-..|||+|. +++-+||++|.+..+ + .+....-|.+|..+..|+|..|+....+++.+.++
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~----~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--D----PKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--T----EE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred CCcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--C----CcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 3678899999999999999998 799999999987763 1 23335679999999999999999866655555554
No 46
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.81 E-value=6.1e-05 Score=53.05 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=43.1
Q ss_pred EEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEE
Q 047141 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQ 157 (215)
Q Consensus 91 vs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~ 157 (215)
++....+..||. ...++. ..|++||++|++++... + +. ..++++||++++|+|..-.+
T Consensus 7 ~~~g~w~~~pg~-~~~~~~--~~E~~~vleG~v~it~~--~--G~--~~~~~aGD~~~~p~G~~~~w 64 (74)
T PF05899_consen 7 FSAGVWECTPGK-FPWPYP--EDEFFYVLEGEVTITDE--D--GE--TVTFKAGDAFFLPKGWTGTW 64 (74)
T ss_dssp EEEEEEEEECEE-EEEEES--SEEEEEEEEEEEEEEET--T--TE--EEEEETTEEEEE-TTEEEEE
T ss_pred EEEEEEEECCce-eEeeCC--CCEEEEEEEeEEEEEEC--C--CC--EEEEcCCcEEEECCCCEEEE
Confidence 466667788875 334443 49999999999998753 2 44 68999999999999986554
No 47
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.74 E-value=7e-05 Score=60.34 Aligned_cols=56 Identities=25% Similarity=0.434 Sum_probs=48.7
Q ss_pred cCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 104 VPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 104 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
...|.|++ +|+-||++|++++-+-+.+ .+.+..-+++||.+++|+|.-|.+.-..+
T Consensus 86 fEEhlh~d-eeiR~il~GtgYfDVrd~d--d~WIRi~vekGDlivlPaGiyHRFTtt~~ 141 (179)
T KOG2107|consen 86 FEEHLHED-EEIRYILEGTGYFDVRDKD--DQWIRIFVEKGDLIVLPAGIYHRFTTTPS 141 (179)
T ss_pred HHHhcCch-hheEEEeecceEEeeccCC--CCEEEEEEecCCEEEecCcceeeeecCch
Confidence 47899996 9999999999999987765 67778899999999999999999855443
No 48
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.73 E-value=0.00013 Score=63.01 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=45.7
Q ss_pred cCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCC
Q 047141 99 APWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVG 161 (215)
Q Consensus 99 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g 161 (215)
.|+...++|||. ..|++||.+|++++.+. ++ .+.+++||++++|+|.+|.....+
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~-----~~--~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVLN-----ER--PYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEEC-----CE--EEeecCCcEEEECCCCcccccccC
Confidence 444457899998 69999999999998872 34 689999999999999999876543
No 49
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.69 E-value=6.1e-05 Score=64.69 Aligned_cols=53 Identities=25% Similarity=0.236 Sum_probs=44.8
Q ss_pred CCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeC
Q 047141 100 PWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNV 160 (215)
Q Consensus 100 pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~ 160 (215)
+....++|||. ..|++||++|++++.+.+ + ...+++||++++|+|..|.....
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i~~-----~--~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVFNG-----Q--PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEecC-----C--cccccCCcEEEECCCccchhhhc
Confidence 34457899998 599999999999998843 3 68899999999999999987654
No 50
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.55 E-value=0.00027 Score=63.54 Aligned_cols=87 Identities=18% Similarity=0.071 Sum_probs=64.2
Q ss_pred CceEEEeeeccCC-CCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEc
Q 047141 72 GSRVTPVTVAQIP-GLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFP 150 (215)
Q Consensus 72 g~~v~~~~~~~~P-~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P 150 (215)
|..+..+|..+=+ .+.+++..+ -.+.+|....+|-|. .+.+++|++|+++..+. ++ +...++||+|++|
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~~--q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig-----~~--~~~W~~gD~f~vP 301 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAFI--QLLPKGFRTATYRST-DATVFCVVEGRGQVRIG-----DA--VFRFSPKDVFVVP 301 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHHH--hccCCCCCCCCcccc-ccEEEEEEeCeEEEEEC-----CE--EEEecCCCEEEEC
Confidence 4456666655544 345555544 347888889999997 59999999999999883 33 6899999999999
Q ss_pred CCCeEEEEeCCCCcEEEEEE
Q 047141 151 VGLIHFQRNVGHGNAFSISG 170 (215)
Q Consensus 151 ~G~~H~~~N~g~~~a~~i~~ 170 (215)
....|...|. +++.++++
T Consensus 302 sW~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 302 SWHPVRFEAS--DDAVLFSF 319 (335)
T ss_pred CCCcEecccC--CCeEEEEe
Confidence 9988877664 45655543
No 51
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.54 E-value=0.00077 Score=56.87 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=62.6
Q ss_pred EEEEEEcCCc-ccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 047141 93 LARIDYAPWG-VVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGL 171 (215)
Q Consensus 93 ~~~~~l~pgg-~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~ 171 (215)
-..+++.|+| .-.+-.-++++-++||++|++++.+. ++ ++.|++|+..++|+|..|...|...+++.+.++-
T Consensus 63 qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~-----G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 63 QYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE-----GK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred hheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc-----Ce--EEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence 3457787876 56777778888899999999999883 44 7899999999999999999999999999998876
Q ss_pred cC
Q 047141 172 SS 173 (215)
Q Consensus 172 ~s 173 (215)
..
T Consensus 136 k~ 137 (264)
T COG3257 136 KR 137 (264)
T ss_pred ec
Confidence 43
No 52
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.30 E-value=0.00078 Score=54.02 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=45.0
Q ss_pred EEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 047141 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISG 170 (215)
Q Consensus 91 vs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~ 170 (215)
|+...++++.. +.-|.-.-.|+.||++|++++.. + ++ +...++||+++||+|.--.+... ..+.++.+
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~--G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv 144 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---D--GQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---T--TE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---C--CE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEEE
Confidence 45666666653 34577667999999999999874 2 44 78999999999999986555333 33444443
No 53
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.16 E-value=0.0049 Score=50.50 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=55.7
Q ss_pred CCcccCCccCCCC-cEEEEEEEcEEEEEEEecCCCC----ceEEEEecCC--cEEEEcCCCeEEEEeCCCCcEEEE
Q 047141 100 PWGVVPPHVHPRA-TEILTVIEGSLEVGFVTSNPDN----RLISKVLQKG--DVFVFPVGLIHFQRNVGHGNAFSI 168 (215)
Q Consensus 100 pgg~~ppH~Hp~a-~Ei~yVl~G~~~~~~~~~~~~~----k~~~~~L~~G--Dv~v~P~G~~H~~~N~g~~~a~~i 168 (215)
||-+..+|+|... .+++.|++|++....++-..+. +.....+.+- ..+.+|+|..|-+++.+++...++
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y 129 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVY 129 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEE
Confidence 8889999999877 8999999999999888754222 4445667665 799999999999999998874333
No 54
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0051 Score=49.16 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=49.9
Q ss_pred cEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 047141 90 GIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSIS 169 (215)
Q Consensus 90 gvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~ 169 (215)
.+++...++++ ...|+-- +-+|+-||++|++.+... ++ +..-++||++++|+|.---+--.|. +.++.
T Consensus 99 ~l~aG~m~~~~-~tf~wtl--~yDe~d~VlEGrL~V~~~-----g~--tv~a~aGDvifiPKgssIefst~ge--a~fly 166 (176)
T COG4766 99 RLGAGLMEMKN-TTFPWTL--NYDEIDYVLEGRLHVRID-----GR--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLY 166 (176)
T ss_pred ccccceeeecc-ccCccee--cccceeEEEeeeEEEEEc-----CC--eEecCCCcEEEecCCCeEEEeccce--EEEEE
Confidence 45667777777 4444443 358999999999999873 23 5789999999999998776655444 55554
Q ss_pred E
Q 047141 170 G 170 (215)
Q Consensus 170 ~ 170 (215)
+
T Consensus 167 v 167 (176)
T COG4766 167 V 167 (176)
T ss_pred E
Confidence 3
No 55
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.95 E-value=0.011 Score=48.56 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=59.4
Q ss_pred cCCcccCCccCC--CCcEEEEEEEcEEEEEEEecCCC----CceEEEEecC--CcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 047141 99 APWGVVPPHVHP--RATEILTVIEGSLEVGFVTSNPD----NRLISKVLQK--GDVFVFPVGLIHFQRNVGHGNAFSISG 170 (215)
Q Consensus 99 ~pgg~~ppH~Hp--~a~Ei~yVl~G~~~~~~~~~~~~----~k~~~~~L~~--GDv~v~P~G~~H~~~N~g~~~a~~i~~ 170 (215)
.+|.+..+|.|. ....++.|++|++..-++|-..+ ++.....|.+ +..++||+|..|.+...+++ +.++..
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 568889999983 36899999999999988886422 3555677877 56999999999999998865 555444
Q ss_pred EcCC-CCce
Q 047141 171 LSSQ-NPGV 178 (215)
Q Consensus 171 ~~s~-~pg~ 178 (215)
.+.. +|+.
T Consensus 131 ~~~~y~p~~ 139 (176)
T TIGR01221 131 CTDYYAPEY 139 (176)
T ss_pred CCCCcCccc
Confidence 4432 4544
No 56
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.93 E-value=0.0037 Score=47.92 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=46.9
Q ss_pred cEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEe
Q 047141 90 GIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRN 159 (215)
Q Consensus 90 gvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N 159 (215)
.+.....+..||. .|++-...|+.++|+|+.++.- + +++ ...+++||+++||+|..=.++-
T Consensus 44 ~~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~---d-~Ge--~v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 44 QVETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTP---D-GGE--PVEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred CeeEeEEEecCcc---ceEEcccceEEEEEeeEEEEEC---C-CCe--EEEEcCCCEEEECCCCeEEEEE
Confidence 3566777778875 4666667999999999999854 2 144 6899999999999998665543
No 57
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.88 E-value=0.025 Score=46.23 Aligned_cols=85 Identities=24% Similarity=0.229 Sum_probs=57.4
Q ss_pred cEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCC--Cce----EEEEecCCcEEEEcCCCeEEEEeCC-C
Q 047141 90 GIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPD--NRL----ISKVLQKGDVFVFPVGLIHFQRNVG-H 162 (215)
Q Consensus 90 gvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~--~k~----~~~~L~~GDv~v~P~G~~H~~~N~g-~ 162 (215)
.+.+..+.-.||...+.|=|.++.=++.|++|+++-......++ ... ....+..|...+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 35677788999999999999976778899999988776654321 011 2345677788888999999999987 7
Q ss_pred CcEEEEEEEcCC
Q 047141 163 GNAFSISGLSSQ 174 (215)
Q Consensus 163 ~~a~~i~~~~s~ 174 (215)
++++-+=+++..
T Consensus 154 ~~avSLHvYspP 165 (175)
T PF05995_consen 154 EPAVSLHVYSPP 165 (175)
T ss_dssp S-EEEEEEEES-
T ss_pred CCEEEEEEcCCC
Confidence 888887777654
No 58
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.78 E-value=0.004 Score=54.92 Aligned_cols=90 Identities=23% Similarity=0.136 Sum_probs=65.5
Q ss_pred CCCceEEEeeeccCC-CCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEE
Q 047141 70 PLGSRVTPVTVAQIP-GLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFV 148 (215)
Q Consensus 70 ~~g~~v~~~~~~~~P-~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v 148 (215)
-.|..+..+|..+=- ...++|-.|- -+.||-...+|-|-+ +-+.-|.+|++++.+. ++ ++..++||+|+
T Consensus 241 ~dG~~~ryvNP~TGg~~mptI~a~mq--lL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~Ig-----~~--rf~~~~~D~fv 310 (351)
T COG3435 241 FDGYKMRYVNPVTGGYAMPTIGAFMQ--LLPPGFHGKAHRHTD-STIYHVVEGSGYTIIG-----GE--RFDWSAGDIFV 310 (351)
T ss_pred CCcceEEEecCCCCCCcCchHHHHHH--hcCCcccCCceeccC-CEEEEEEecceeEEEC-----CE--EeeccCCCEEE
Confidence 346666666654411 1222222222 267888889998985 8899999999999883 34 78999999999
Q ss_pred EcCCCeEEEEeCCCCcEEEEEE
Q 047141 149 FPVGLIHFQRNVGHGNAFSISG 170 (215)
Q Consensus 149 ~P~G~~H~~~N~g~~~a~~i~~ 170 (215)
+|.-..|...|. .+++.++++
T Consensus 311 VPsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 311 VPSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred ccCcceeecccC-CcceEEEec
Confidence 999999999885 788888765
No 59
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.67 E-value=0.029 Score=46.05 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=56.0
Q ss_pred cCCcccCCccCCCC---cEEEEEEEcEEEEEEEecCCC----CceEEEEecCCc--EEEEcCCCeEEEEeCCCCcEEEEE
Q 047141 99 APWGVVPPHVHPRA---TEILTVIEGSLEVGFVTSNPD----NRLISKVLQKGD--VFVFPVGLIHFQRNVGHGNAFSIS 169 (215)
Q Consensus 99 ~pgg~~ppH~Hp~a---~Ei~yVl~G~~~~~~~~~~~~----~k~~~~~L~~GD--v~v~P~G~~H~~~N~g~~~a~~i~ 169 (215)
.+|.+..+|+|... ..++.|++|++..-++|-..+ ++.....|.+++ .++||+|+.|.+...+++ +.++.
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~-a~v~Y 129 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD-AEVLY 129 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE-EEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc-eEEEE
Confidence 45888999999864 689999999999999884321 456678888876 799999999999999766 44443
Q ss_pred EEcC-CCCce
Q 047141 170 GLSS-QNPGV 178 (215)
Q Consensus 170 ~~~s-~~pg~ 178 (215)
..+. -+|+.
T Consensus 130 ~~t~~y~p~~ 139 (176)
T PF00908_consen 130 KVTNYYDPED 139 (176)
T ss_dssp EESS---GGG
T ss_pred ecCCccCccc
Confidence 3332 35543
No 60
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.50 E-value=0.017 Score=48.27 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=49.5
Q ss_pred EEEEEEcC-CcccCCccCCCCcEEEEEEEcEEEEEEEecCC---------------------------------CCceEE
Q 047141 93 LARIDYAP-WGVVPPHVHPRATEILTVIEGSLEVGFVTSNP---------------------------------DNRLIS 138 (215)
Q Consensus 93 ~~~~~l~p-gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~---------------------------------~~k~~~ 138 (215)
...+-+.+ |...++|+.+ ..-++.+++|+=++.+..+.. ..+.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 34455655 6678999988 588999999999888876531 013467
Q ss_pred EEecCCcEEEEcCCCeEEEEeCCCCc
Q 047141 139 KVLQKGDVFVFPVGLIHFQRNVGHGN 164 (215)
Q Consensus 139 ~~L~~GDv~v~P~G~~H~~~N~g~~~ 164 (215)
.+|++||+++||+|..|+.+|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999994443
No 61
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=95.93 E-value=0.047 Score=47.86 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=57.5
Q ss_pred ccEEEEEEEEcCCc-c--cCCccCCCCcEEEEEE---EcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 89 LGIALARIDYAPWG-V--VPPHVHPRATEILTVI---EGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 89 lgvs~~~~~l~pgg-~--~ppH~Hp~a~Ei~yVl---~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
-.+-+....+.||+ + .|||.|++..|..|-. ++.-.+.+.++ + ++.+...++-+|+++.|+-.+|.. .|.
T Consensus 173 ~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~-p-dETrh~~v~n~~aVisP~wsih~g--~gt 248 (276)
T PRK00924 173 CQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGE-P-QETRHIVVHNEQAVISPSWSIHSG--VGT 248 (276)
T ss_pred ccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCC-c-cceeeEEEECCCEEECCCcceecC--cCc
Confidence 34677777789998 3 5999999777754422 22222233221 1 232347899999999999999985 677
Q ss_pred CcEEEEEEEcCCC
Q 047141 163 GNAFSISGLSSQN 175 (215)
Q Consensus 163 ~~a~~i~~~~s~~ 175 (215)
..-.||+..--+|
T Consensus 249 ~~y~fiw~m~gen 261 (276)
T PRK00924 249 SNYTFIWGMAGEN 261 (276)
T ss_pred cccEEEEEecccC
Confidence 8888999887665
No 62
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.74 E-value=0.077 Score=45.01 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=45.5
Q ss_pred EEEcCCcccCCccCCCCcEEEEEEE-cEEEEEEEecCC--------------CCceE------EEEecCCcEEEEcCCCe
Q 047141 96 IDYAPWGVVPPHVHPRATEILTVIE-GSLEVGFVTSNP--------------DNRLI------SKVLQKGDVFVFPVGLI 154 (215)
Q Consensus 96 ~~l~pgg~~ppH~Hp~a~Ei~yVl~-G~~~~~~~~~~~--------------~~k~~------~~~L~~GDv~v~P~G~~ 154 (215)
+.+.+|...|.|.|..-.|=++.-- |++.+.+..+++ +++.+ ..+|+||+.+-+++|..
T Consensus 92 m~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~y 171 (225)
T PF07385_consen 92 MIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIY 171 (225)
T ss_dssp EEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEE
T ss_pred eeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCe
Confidence 5568999999999998888777665 688777776531 12111 35899999999999999
Q ss_pred EEEEeCCCCcEEEEEEE
Q 047141 155 HFQRNVGHGNAFSISGL 171 (215)
Q Consensus 155 H~~~N~g~~~a~~i~~~ 171 (215)
|+++--+.. +++.=+
T Consensus 172 H~Fw~e~g~--vLigEV 186 (225)
T PF07385_consen 172 HWFWGEGGD--VLIGEV 186 (225)
T ss_dssp EEEEE-TTS--EEEEEE
T ss_pred eeEEecCCC--EEEEee
Confidence 999876444 444433
No 63
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.65 E-value=0.076 Score=40.13 Aligned_cols=63 Identities=29% Similarity=0.385 Sum_probs=46.4
Q ss_pred CcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcC--CCeEEEEeCCC-CcEEEEE
Q 047141 101 WGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPV--GLIHFQRNVGH-GNAFSIS 169 (215)
Q Consensus 101 gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~--G~~H~~~N~g~-~~a~~i~ 169 (215)
+.-.++|-|.+-+-+.||++|+++-. |+. +. ..+|++||+-+.-+ |+.|...|.++ +++..+-
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~--G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQ 104 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSL--GN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQ 104 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETT--SE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCC--CC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEE
Confidence 44568999997666789999999763 443 22 57899999888865 78999999987 6777654
No 64
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.46 E-value=0.073 Score=49.36 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=38.2
Q ss_pred ccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 047141 107 HVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLS 172 (215)
Q Consensus 107 H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~ 172 (215)
-.+-+++|++++-+|++++.- +- + ...+++||.++||+|+.+.+.-.|.....++.++.
T Consensus 141 f~NaDGD~Li~~q~G~l~l~T--e~--G---~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~~~ 199 (424)
T PF04209_consen 141 FRNADGDELIFPQQGSLRLET--EF--G---RLDVRPGDYVVIPRGTRFRVELPGPARGYIIENFG 199 (424)
T ss_dssp EEESSEEEEEEEEES-EEEEE--TT--E---EEEE-TTEEEEE-TT--EEEE-SSSEEEEEEEEES
T ss_pred eEcCCCCEEEEEEECCEEEEe--cC--e---eEEEcCCeEEEECCeeEEEEEeCCCceEEEEEcCC
Confidence 346679999999999999865 22 3 46799999999999999998666433333444444
No 65
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.24 E-value=0.22 Score=44.34 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=42.8
Q ss_pred EEEEEcCCc--ccCCccCCCCcEEEEEEEcEEEEEEEecCC----------------CCceEEEEecCCcEEEEcCCCeE
Q 047141 94 ARIDYAPWG--VVPPHVHPRATEILTVIEGSLEVGFVTSNP----------------DNRLISKVLQKGDVFVFPVGLIH 155 (215)
Q Consensus 94 ~~~~l~pgg--~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~----------------~~k~~~~~L~~GDv~v~P~G~~H 155 (215)
+.+-+.|++ ...|||=. ..-+++=++|+=+..+..... .......+|++||++++|+|.+|
T Consensus 116 ~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H 194 (319)
T PF08007_consen 116 ANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWH 194 (319)
T ss_dssp EEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EE
T ss_pred eEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccC
Confidence 344566766 68999876 355666678887777766210 02245789999999999999999
Q ss_pred EEEeCC
Q 047141 156 FQRNVG 161 (215)
Q Consensus 156 ~~~N~g 161 (215)
.....+
T Consensus 195 ~~~~~~ 200 (319)
T PF08007_consen 195 QAVTTD 200 (319)
T ss_dssp EEEESS
T ss_pred CCCCCC
Confidence 999988
No 66
>PF12852 Cupin_6: Cupin
Probab=95.24 E-value=0.088 Score=42.78 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=36.1
Q ss_pred cEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 113 TEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 113 ~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
.-+.+|++|+.++.+.+. .+ ...|++||++++|+|..|.+....+
T Consensus 36 ~~fh~V~~G~~~l~~~~~---~~--~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGG---GE--PIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred eEEEEEECCeEEEEEcCC---CC--eEEecCCCEEEEcCCCCeEeCCCCC
Confidence 668899999999987431 22 6899999999999999999854433
No 67
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.21 E-value=0.064 Score=39.49 Aligned_cols=64 Identities=27% Similarity=0.301 Sum_probs=31.3
Q ss_pred EEcCCcccCCccCCCCc--EEEEEE--EcEEEEEEEecCC----------------CCceEEEEecCCcEEEEcCCCeEE
Q 047141 97 DYAPWGVVPPHVHPRAT--EILTVI--EGSLEVGFVTSNP----------------DNRLISKVLQKGDVFVFPVGLIHF 156 (215)
Q Consensus 97 ~l~pgg~~ppH~Hp~a~--Ei~yVl--~G~~~~~~~~~~~----------------~~k~~~~~L~~GDv~v~P~G~~H~ 156 (215)
..++|+..++|.|+++. =++||- ++...+.+.+++. ....+....++||+++||+-+.|.
T Consensus 6 i~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H~ 85 (101)
T PF13759_consen 6 IYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWHG 85 (101)
T ss_dssp EE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEEE
T ss_pred EeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEEe
Confidence 46789999999999642 233333 2223334443321 022346788999999999999999
Q ss_pred EEeC
Q 047141 157 QRNV 160 (215)
Q Consensus 157 ~~N~ 160 (215)
..-.
T Consensus 86 v~p~ 89 (101)
T PF13759_consen 86 VPPN 89 (101)
T ss_dssp E---
T ss_pred ccCc
Confidence 8444
No 68
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.04 E-value=0.026 Score=48.92 Aligned_cols=75 Identities=17% Similarity=0.088 Sum_probs=44.0
Q ss_pred EEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 047141 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISG 170 (215)
Q Consensus 91 vs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~ 170 (215)
+.-..+.++.|....+|+|+ ..|-.||++|++.++..... + ...|.+|..+.-|.+..|... .++++++++.-
T Consensus 171 ~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~--~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIR 243 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGAS--N---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYIR 243 (251)
T ss_dssp E-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEE--T---TEEEEE-TT-EE--E-------EESS-EEEEEE
T ss_pred eeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccC--C---CccccCCcccccCCccccccc-ccCCCEEEEEE
Confidence 44555667777778999999 59999999999999664321 2 579999999999999999998 77888888765
Q ss_pred Ec
Q 047141 171 LS 172 (215)
Q Consensus 171 ~~ 172 (215)
.+
T Consensus 244 td 245 (251)
T PF14499_consen 244 TD 245 (251)
T ss_dssp ES
T ss_pred EC
Confidence 44
No 69
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=94.86 E-value=0.4 Score=40.18 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=65.9
Q ss_pred CCceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCC--------CCceEEEE--
Q 047141 71 LGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNP--------DNRLISKV-- 140 (215)
Q Consensus 71 ~g~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~--------~~k~~~~~-- 140 (215)
....|+-+.. ...-.+++...-+.||..+|+|=||+-+-+.-|+.|++.+.-.+--. ..+.....
T Consensus 29 ~~~~i~y~~i-----yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~ 103 (200)
T PF07847_consen 29 SSPPITYMHI-----YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLV 103 (200)
T ss_pred CCCCeEEEEE-----EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEE
Confidence 3444555443 33345688888999999999999998888888999999987654210 00111111
Q ss_pred ----e-cCCc-EEEEcC--CCeEEEEeCCCCcEEEEEEEcC
Q 047141 141 ----L-QKGD-VFVFPV--GLIHFQRNVGHGNAFSISGLSS 173 (215)
Q Consensus 141 ----L-~~GD-v~v~P~--G~~H~~~N~g~~~a~~i~~~~s 173 (215)
+ .+++ .+..|. |-+|.+.+.+ +++.++-++..
T Consensus 104 ~d~~~~a~~~~~vL~P~~ggNiH~f~a~~-~p~AflDIL~P 143 (200)
T PF07847_consen 104 VDGEMTAPSDTCVLYPTSGGNIHEFTALT-GPCAFLDILAP 143 (200)
T ss_pred ecceecCCCCCeEEccCCCCeeEEEEeCC-CCeEEEEEccC
Confidence 2 2334 555676 5999999987 89999998864
No 70
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=94.84 E-value=0.059 Score=45.46 Aligned_cols=59 Identities=15% Similarity=0.352 Sum_probs=50.0
Q ss_pred EcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeC
Q 047141 98 YAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNV 160 (215)
Q Consensus 98 l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~ 160 (215)
=.|+.....|..+ +.|++|=.+|.....+++. ++....++++||++..|..++|.-+.-
T Consensus 40 GGPN~RkdyHiee-geE~FyQ~KGdMvLKVie~---g~~rDivI~qGe~flLParVpHSPqRF 98 (279)
T KOG3995|consen 40 GGPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ---GKHRDVVIRQGEIFLLPARVPHSPQRF 98 (279)
T ss_pred cCCCcccccccCC-cchhheeecCceEEeeecc---CcceeeEEecCcEEEeccCCCCChhhh
Confidence 4666677889888 6999999999999999986 466689999999999999999975443
No 71
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.79 E-value=0.28 Score=45.45 Aligned_cols=60 Identities=8% Similarity=0.129 Sum_probs=44.7
Q ss_pred CccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 047141 106 PHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLS 172 (215)
Q Consensus 106 pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~ 172 (215)
.-..-+++|++++-+|++.+...- + ...+++||+++||+|+.+.+.-.+.....++.++.
T Consensus 142 ~f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 142 AFYNADGDFLIVPQQGALLITTEF----G---RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred eeeccCCCEEEEEEeCcEEEEEec----c---ceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 344557899999999999986532 3 46899999999999999998665543444444444
No 72
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=94.78 E-value=0.12 Score=44.80 Aligned_cols=49 Identities=24% Similarity=0.238 Sum_probs=38.2
Q ss_pred CccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 106 PHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 106 pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
||-+. +-++.++++|++.+... ++ .+.+++||++++|+|.+|......+
T Consensus 44 ~~~~~-~~~i~~~~~G~~~~~~~-----~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 44 PLGMK-GYILNLTIRGQGVIFNG-----GR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCCcc-ceEEEEEEeccEEEecC-----Ce--eEecCCCCEEEECCCCceeeccCCC
Confidence 34333 57899999999998652 34 6899999999999999998755443
No 73
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.78 E-value=0.1 Score=45.86 Aligned_cols=71 Identities=25% Similarity=0.311 Sum_probs=53.5
Q ss_pred EEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcC--CCeEEEEeC--CCCcEEEEEE
Q 047141 95 RIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPV--GLIHFQRNV--GHGNAFSISG 170 (215)
Q Consensus 95 ~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~--G~~H~~~N~--g~~~a~~i~~ 170 (215)
..++.||.-.+||-|.+-+-+.||++|+++-+ |+. +| ...+++||+-..-+ |..|...|. ..++...+-+
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~-Gn---~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~Ql 121 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSL-GN---KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQL 121 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecC-Cc---eeeecccceeEEcCCCceeecccCCccCCCccceeee
Confidence 34589999999999997666789999998874 333 24 47899999988876 689999987 2335555544
Q ss_pred E
Q 047141 171 L 171 (215)
Q Consensus 171 ~ 171 (215)
.
T Consensus 122 W 122 (276)
T COG1741 122 W 122 (276)
T ss_pred e
Confidence 4
No 74
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.74 E-value=0.13 Score=43.02 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=43.9
Q ss_pred EEEEEcCCcccCCccCCCC--cEEEEEE--EcEEEEEEEecCC-----------C-----CceEEEEecCCcEEEEcCCC
Q 047141 94 ARIDYAPWGVVPPHVHPRA--TEILTVI--EGSLEVGFVTSNP-----------D-----NRLISKVLQKGDVFVFPVGL 153 (215)
Q Consensus 94 ~~~~l~pgg~~ppH~Hp~a--~Ei~yVl--~G~~~~~~~~~~~-----------~-----~k~~~~~L~~GDv~v~P~G~ 153 (215)
-...+++|+....|.|+++ +=++||- +|...+.+.++.. + .......-++||+++||+-+
T Consensus 99 W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L 178 (201)
T TIGR02466 99 WVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWL 178 (201)
T ss_pred eEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCC
Confidence 3345689999999999974 2234444 2222233322210 0 00112345899999999999
Q ss_pred eEEEEeCCCCcEEEEEEE
Q 047141 154 IHFQRNVGHGNAFSISGL 171 (215)
Q Consensus 154 ~H~~~N~g~~~a~~i~~~ 171 (215)
.|...-...+.-++-.+|
T Consensus 179 ~H~v~p~~~~~~RISiSF 196 (201)
T TIGR02466 179 RHEVPPNESEEERISVSF 196 (201)
T ss_pred ceecCCCCCCCCEEEEEE
Confidence 998844333333333344
No 75
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=94.70 E-value=0.3 Score=45.38 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=42.1
Q ss_pred CccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 047141 106 PHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSIS 169 (215)
Q Consensus 106 pH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~ 169 (215)
.-.+-+++|++++.+|++.+.-.- + ...+++||+++||+|+.+.+. ..+.++..+.
T Consensus 148 ~f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~-l~~gp~rgyi 203 (438)
T PRK05341 148 YFYNADGELLIVPQQGRLRLATEL----G---VLDVEPGEIAVIPRGVKFRVE-LPDGPARGYV 203 (438)
T ss_pred eeecCCCCEEEEEEeCCEEEEEec----c---ceEecCCCEEEEcCccEEEEe-cCCCCeeEEE
Confidence 344567899999999999986532 3 468999999999999999875 3334544443
No 76
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=94.42 E-value=0.19 Score=41.74 Aligned_cols=77 Identities=26% Similarity=0.262 Sum_probs=47.6
Q ss_pred EEEEcCCcccCCccCCCCcEEEEE-EEcEEEEEEEecC---C-----------CCceE------EEEecCCcEEEEcCCC
Q 047141 95 RIDYAPWGVVPPHVHPRATEILTV-IEGSLEVGFVTSN---P-----------DNRLI------SKVLQKGDVFVFPVGL 153 (215)
Q Consensus 95 ~~~l~pgg~~ppH~Hp~a~Ei~yV-l~G~~~~~~~~~~---~-----------~~k~~------~~~L~~GDv~v~P~G~ 153 (215)
.+...+|...|.|.|++-.|=++= =.|++.+.....+ + +++.. ...|+||+.+-+|+|+
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~ 169 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL 169 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence 356789999999999965553222 2344444443221 0 11111 3589999999999999
Q ss_pred eEEEEeCCCCcEEEEEEEcC
Q 047141 154 IHFQRNVGHGNAFSISGLSS 173 (215)
Q Consensus 154 ~H~~~N~g~~~a~~i~~~~s 173 (215)
.|+++.-+.. +++.=.++
T Consensus 170 ~HsFwae~g~--vlvgEvSs 187 (225)
T COG3822 170 YHSFWAEEGG--VLVGEVSS 187 (225)
T ss_pred eeeeeecCCc--EEEEEEee
Confidence 9999875443 44443333
No 77
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.35 E-value=0.4 Score=44.55 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=41.4
Q ss_pred ccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 047141 107 HVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSIS 169 (215)
Q Consensus 107 H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~ 169 (215)
-.+-+++|++++-+|++.+.-.- + ...+++||+++||+|+.+.+.-. ++++..+.
T Consensus 142 f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l~-~gp~rgyv 196 (435)
T PLN02658 142 FCNADGDFLIVPQQGRLWIKTEL----G---KLQVSPGEIVVIPRGFRFAVDLP-DGPSRGYV 196 (435)
T ss_pred eecCCCCEEEEEEeCCEEEEEec----c---ceEecCCCEEEecCccEEEEecC-CCCeeEEE
Confidence 44667899999999999986532 3 46899999999999999887532 34544443
No 78
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=94.05 E-value=0.14 Score=37.80 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=22.4
Q ss_pred ceEEEEecCCcEEEEcCCCeEEEEeCCCCc
Q 047141 135 RLISKVLQKGDVFVFPVGLIHFQRNVGHGN 164 (215)
Q Consensus 135 k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~ 164 (215)
+.+..+-++||.+++|+|..|+..|.|..-
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i 108 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDNI 108 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSEE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCceE
Confidence 456789999999999999999999998643
No 79
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=93.67 E-value=0.49 Score=38.41 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=49.4
Q ss_pred EEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecC------CCCceEEEEecCCcEEEEcCCCeEEEEeCCCCc
Q 047141 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSN------PDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGN 164 (215)
Q Consensus 91 vs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~------~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~ 164 (215)
+++..+++.||...|+|-|- ..-++=|+.|.-+-.+..-. |+.+ .+.+.+|++- .-+|.+|.+.|.+...
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~~q--dk~~apgeV~-lSpgdihsv~n~~sdr 148 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPERQ--DKFAAPGEVH-LSPGDIHSVANTGSDR 148 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcchh--hhhcCcceEe-eCCCCeeeecccCCCc
Confidence 57889999999999999997 57788888887554332211 1122 3456666666 3336666666666554
Q ss_pred EEEEEEE
Q 047141 165 AFSISGL 171 (215)
Q Consensus 165 a~~i~~~ 171 (215)
...|-++
T Consensus 149 s~aiHvy 155 (191)
T COG5553 149 SGAIHVY 155 (191)
T ss_pred cceEEEE
Confidence 4444343
No 80
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.047 Score=51.10 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=45.0
Q ss_pred cCCcc-cCCccCCCCcEEEEEEEcEEEEEEEecCC------------------CCceEEEEecCCcEEEEcCCCeEEEEe
Q 047141 99 APWGV-VPPHVHPRATEILTVIEGSLEVGFVTSNP------------------DNRLISKVLQKGDVFVFPVGLIHFQRN 159 (215)
Q Consensus 99 ~pgg~-~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~------------------~~k~~~~~L~~GDv~v~P~G~~H~~~N 159 (215)
+||+. .+|||-. -+-+++=++|+=...+..+.. +.-++...|++||+++||+|.+|....
T Consensus 325 PagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 44553 7999986 356677789998877765430 233456789999999999999998754
Q ss_pred C
Q 047141 160 V 160 (215)
Q Consensus 160 ~ 160 (215)
.
T Consensus 404 ~ 404 (629)
T KOG3706|consen 404 P 404 (629)
T ss_pred c
Confidence 4
No 81
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.57 E-value=0.41 Score=41.78 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=47.9
Q ss_pred cCCcccCCccC-CCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCC-cEEEEcCCCeEEEEeCCCC
Q 047141 99 APWGVVPPHVH-PRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKG-DVFVFPVGLIHFQRNVGHG 163 (215)
Q Consensus 99 ~pgg~~ppH~H-p~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~G-Dv~v~P~G~~H~~~N~g~~ 163 (215)
-|++...+|-| +...|.+.|++|++.+.+.++++ .......+.+. +.-++|++..|...-..+.
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g-~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d 84 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDG-EELSEHIFDAENQPPFIEPQAWHRIEAASDD 84 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCC-CeeeEEEEecCCCCceeCCcceEEEEEcCCC
Confidence 47778899999 57789999999999998887652 23334556664 5657999999999776433
No 82
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=93.47 E-value=0.91 Score=33.53 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=43.4
Q ss_pred EEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 047141 97 DYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGL 171 (215)
Q Consensus 97 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~ 171 (215)
.+.||. .+....+.|++-|++|++++.+-++ .. .+++++|+.|.+|++.-..++-. ++..++|.+
T Consensus 29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~---~e--w~~~~aGesF~VpanssF~v~v~--~~~~Y~C~y 93 (94)
T PF06865_consen 29 VMLPGE---YTFGTSAPERMEVVSGELEVKLPGE---DE--WQTYSAGESFEVPANSSFDVKVK--EPTAYLCSY 93 (94)
T ss_dssp EE-SEC---EEEEESS-EEEEEEESEEEEEETT----SS---EEEETT-EEEE-TTEEEEEEES--S-EEEEEEE
T ss_pred EEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCC---cc--cEEeCCCCeEEECCCCeEEEEEC--cceeeEEEe
Confidence 456665 3444457899999999999999543 23 68999999999999988777653 566666644
No 83
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.04 E-value=0.73 Score=39.89 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=44.8
Q ss_pred EEEEEEEEcCCccc-----CCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 91 IALARIDYAPWGVV-----PPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 91 vs~~~~~l~pgg~~-----ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
+.+.++...+.... ..|.+.+.-.++++++|++.+... ++ ...+++||++++|.+.+|...-.+.
T Consensus 45 ~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~-----g~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 45 LKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQD-----DR--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred EEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEEC-----Ce--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 45666665554321 234444455677889999998762 34 6889999999999999998755443
No 84
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=92.96 E-value=0.55 Score=37.78 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=42.2
Q ss_pred EEEEEEcCCcccCCccCCCCcE----EEEEE-EcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 047141 93 LARIDYAPWGVVPPHVHPRATE----ILTVI-EGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFS 167 (215)
Q Consensus 93 ~~~~~l~pgg~~ppH~Hp~a~E----i~yVl-~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 167 (215)
+....+.||+.+.||.-+.... +-+++ .+...+.+. ++ ....++|++++|.-...|...|.|+++-+.
T Consensus 82 ~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~-----~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~ 154 (163)
T PF05118_consen 82 VRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG-----GE--TRHWREGECWVFDDSFEHEVWNNGDEDRVV 154 (163)
T ss_dssp EEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET-----TE--EEB--CTEEEEE-TTS-EEEEESSSS-EEE
T ss_pred EEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC-----Ce--EEEeccCcEEEEeCCEEEEEEeCCCCCEEE
Confidence 3334579999999998774222 22222 133444331 33 678999999999999999999999876655
Q ss_pred EE
Q 047141 168 IS 169 (215)
Q Consensus 168 i~ 169 (215)
+.
T Consensus 155 L~ 156 (163)
T PF05118_consen 155 LI 156 (163)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 85
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=92.71 E-value=0.55 Score=39.96 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=58.2
Q ss_pred CCCCcccEEEEEEEEcCCcccCC-ccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 84 PGLNTLGIALARIDYAPWGVVPP-HVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 84 P~l~~lgvs~~~~~l~pgg~~pp-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
|.--...|-+..+.++||+.+|. -+|- .+-=+||++|++.+.+.. . -..+++||.+..-+-.+.+.+..|.
T Consensus 175 P~d~r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn~-----d--wv~V~aGD~mwm~A~cpQacyagG~ 246 (264)
T COG3257 175 PKELRFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLNN-----N--WVPVEAGDYIWMGAYCPQACYAGGR 246 (264)
T ss_pred ccccCcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeecC-----c--eEEeecccEEEeeccChhhhccCCC
Confidence 44445578889999999998765 4454 234589999999998832 2 6889999999998888888877777
Q ss_pred CcEEEE
Q 047141 163 GNAFSI 168 (215)
Q Consensus 163 ~~a~~i 168 (215)
....++
T Consensus 247 g~frYL 252 (264)
T COG3257 247 GAFRYL 252 (264)
T ss_pred CceEEE
Confidence 655554
No 86
>PRK10579 hypothetical protein; Provisional
Probab=92.47 E-value=2 Score=31.76 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=46.1
Q ss_pred EcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 047141 98 YAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISG 170 (215)
Q Consensus 98 l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~ 170 (215)
+.||. .+.-..+.|++-|++|++++.+-+++ . .+.+++|+.|.+|.+.-..++.. +...+++.
T Consensus 30 m~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~---e--w~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~ 92 (94)
T PRK10579 30 MAEGE---YTFSTAEPEEMTVISGALNVLLPGAT---D--WQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCR 92 (94)
T ss_pred EeeeE---EEEcCCCcEEEEEEeeEEEEECCCCc---c--cEEeCCCCEEEECCCCeEEEEEC--cceeeEEE
Confidence 44554 33334579999999999999986542 3 68999999999999998776553 45555554
No 87
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=92.00 E-value=0.51 Score=39.49 Aligned_cols=90 Identities=22% Similarity=0.270 Sum_probs=68.5
Q ss_pred cCCCCceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEE
Q 047141 68 SNPLGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVF 147 (215)
Q Consensus 68 ~~~~g~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~ 147 (215)
....|+++..+...+ .-..+++++.++||...|-|+|- +-|...|++|... +++ -.+.+||..
T Consensus 110 W~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~s----de~-------G~y~vgD~~ 172 (216)
T COG3806 110 WLGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAFS----DEN-------GEYLVGDFT 172 (216)
T ss_pred eecCCcceeecccCC-----CCCceeEEEEeccCccccccccc-ceEEEEEEeeccc----cCC-------CccccCcee
Confidence 345677666654322 22468999999999999999998 6999999999754 333 258899999
Q ss_pred EEcCCCeEEEEeCCCCcEEEEEEEcCC
Q 047141 148 VFPVGLIHFQRNVGHGNAFSISGLSSQ 174 (215)
Q Consensus 148 v~P~G~~H~~~N~g~~~a~~i~~~~s~ 174 (215)
.-+.++-|.-.-..+.++..++++.-+
T Consensus 173 ~~d~~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 173 LADGTVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred ecCCccccccccCCCCCceEEEEcCCC
Confidence 999999998766677888888877543
No 88
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=91.56 E-value=1.7 Score=32.12 Aligned_cols=68 Identities=21% Similarity=0.149 Sum_probs=42.9
Q ss_pred EEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 047141 94 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGL 171 (215)
Q Consensus 94 ~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~ 171 (215)
..+.++||+.......+...-++||++|++.+ + ++ ...+.+|+++++..|..=.+.+.+ +.+.++.+-
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v---~----~~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV---G----GE--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE---T----TT--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEE---C----CC--cceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence 45678888865333333346689999999876 1 22 267999999999976666666653 666666543
No 89
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.35 E-value=2.7 Score=38.22 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=47.5
Q ss_pred ccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCC
Q 047141 89 LGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHG 163 (215)
Q Consensus 89 lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~ 163 (215)
-|+.+....+..+-....-..-+++|++++.+|++++--.- + ..++++||..+||+|+....+-.+.+
T Consensus 123 ~g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~----G---~l~v~pgeiavIPRG~~frve~~~~~ 190 (427)
T COG3508 123 DGVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTEL----G---VLEVEPGEIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred CceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEee----c---eEEecCCcEEEeeCCceEEEEecCCc
Confidence 34444443443332224455668899999999999975432 2 57899999999999999988776544
No 90
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=90.48 E-value=2.1 Score=30.72 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=41.6
Q ss_pred cccCCccCC-CCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 102 GVVPPHVHP-RATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 102 g~~ppH~Hp-~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
+....|.-. +.-..+-|++|++.+...+++++--.....+++|+..++++...|.+.-.++
T Consensus 14 ~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 14 ALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 344445333 3334688999999999887642111236789999999999999999987765
No 91
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=90.36 E-value=1.8 Score=39.84 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=40.4
Q ss_pred EEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEE
Q 047141 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQR 158 (215)
Q Consensus 91 vs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~ 158 (215)
..+.++++..+.. +...++.++++|++|++++.. . +. +..|++|+++++|++......
T Consensus 321 F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~--~---~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 321 FAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWK--G---EQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred cEEEEEEECCceE---EecCCCcEEEEEEcceEEEEe--C---Ce--EEEECCCCEEEEeCCCccEEE
Confidence 3556666654422 222246799999999999853 1 22 578999999999998776654
No 92
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.83 E-value=2.4 Score=38.75 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=52.4
Q ss_pred CCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 83 IPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 83 ~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
.|... ..++.+++++.|...-.-.-+ +.-+++|++|++++...+. . ...+++||+++||+...-.+ +..+
T Consensus 327 ~Ppi~--eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t~---~---~~~v~rG~V~fI~a~~~i~~-~~~s 396 (411)
T KOG2757|consen 327 DPPIE--EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDTD---S---KILVNRGDVLFIPANHPIHL-SSSS 396 (411)
T ss_pred CCCCc--ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCCC---C---ceeeccCcEEEEcCCCCcee-eccC
Confidence 34444 346777778776653333334 6889999999999876432 2 57899999999999876544 3344
Q ss_pred CcEEEEEEE
Q 047141 163 GNAFSISGL 171 (215)
Q Consensus 163 ~~a~~i~~~ 171 (215)
++...+-++
T Consensus 397 d~~~~yrAf 405 (411)
T KOG2757|consen 397 DPFLGYRAF 405 (411)
T ss_pred cceeeeecc
Confidence 544444444
No 93
>PLN02288 mannose-6-phosphate isomerase
Probab=88.75 E-value=1.5 Score=40.47 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=39.1
Q ss_pred cEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCC
Q 047141 90 GIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGL 153 (215)
Q Consensus 90 gvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~ 153 (215)
..++.++++.++.......+ ++.++++|++|++++... +......|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~~-----~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLSTG-----SSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEecC-----CccceEEEeceeEEEEeCCC
Confidence 34677777877753222113 368999999999998542 11113569999999999864
No 94
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=88.74 E-value=5.7 Score=30.69 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=40.5
Q ss_pred EEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 91 vs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
+.+.++.....-.+...-+.+.--+.+.++|+..+... ++ ...+.+||+++++.+.++...-.+.
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~-----g~--~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQG-----GR--EVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEEC-----CE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence 45555555433222111112234456667788887652 33 7899999999999999988765543
No 95
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=88.28 E-value=3.5 Score=36.36 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=41.2
Q ss_pred cEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEE
Q 047141 90 GIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQR 158 (215)
Q Consensus 90 gvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~ 158 (215)
...+.++++..... ...+ ++..+++|++|++++.. . +. +..|++|+.+++|++.-....
T Consensus 234 ~F~~~~~~~~~~~~--~~~~-~~~~il~v~~G~~~i~~--~---~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAE--FIQQ-QSALILSVLEGSGRIKS--G---GK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCcee--eccC-CCcEEEEEEcceEEEEE--C---CE--EEEEecccEEEEccCCccEEE
Confidence 35667777754321 1123 36889999999999854 2 22 578999999999999866554
No 96
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=87.86 E-value=12 Score=32.61 Aligned_cols=98 Identities=21% Similarity=0.281 Sum_probs=51.0
Q ss_pred ceEEEeeeccCCCCCcccEEEEEEEEcCCc-c--cCCccCCCC--------cEEEEEE----EcEEEEEEEecCCCCceE
Q 047141 73 SRVTPVTVAQIPGLNTLGIALARIDYAPWG-V--VPPHVHPRA--------TEILTVI----EGSLEVGFVTSNPDNRLI 137 (215)
Q Consensus 73 ~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg-~--~ppH~Hp~a--------~Ei~yVl----~G~~~~~~~~~~~~~k~~ 137 (215)
-.|......+.+. .-.+-+..+. .|+| . .|||.|++. +|+.|-. +|-+.-.+.+.++ ..-.
T Consensus 135 R~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~-~~d~ 210 (261)
T PF04962_consen 135 RTVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDP-QLDE 210 (261)
T ss_dssp EEEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTS-SSEE
T ss_pred EEEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCC-CCcE
Confidence 3444444444442 2234566555 5555 3 599999962 5665553 2433333333221 1123
Q ss_pred EEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCC
Q 047141 138 SKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQN 175 (215)
Q Consensus 138 ~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~s~~ 175 (215)
...++-||++.+|+| .|-+.........+++++-..+
T Consensus 211 ~~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 211 HYVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEEEETTEEEEESTT-B-SEEEEEESSEEEEEEEESSS
T ss_pred EEEEECCCEEEeCCC-CCCcCcCCCcCcEEEEEEEcCC
Confidence 678999999999999 3333222234455888887666
No 97
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=87.56 E-value=5.7 Score=33.20 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=49.2
Q ss_pred cEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 047141 90 GIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSIS 169 (215)
Q Consensus 90 gvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~ 169 (215)
+.......+++|...-..=.+ ...+.+|++|.+.+...+++| ++.....+.+||++-+..+..+.....-.+++.++.
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G-~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~ 112 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDG-RRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRL 112 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCC-cEEEEEEecCCceecccCCCcCCeEEEEcCceEEEE
Confidence 445666778888765433333 578999999999998877652 344556678999887655544332222234454443
No 98
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=86.80 E-value=3.7 Score=27.87 Aligned_cols=57 Identities=18% Similarity=0.068 Sum_probs=40.8
Q ss_pred EEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEe
Q 047141 96 IDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRN 159 (215)
Q Consensus 96 ~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N 159 (215)
..+.||....++-.. ...+-|.+|++.+.... ....+.|++||.+.+++|.--+...
T Consensus 2 ~~L~~g~~~~lr~~~--~~~l~v~~G~vWlT~~g-----~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA--GQRLRVESGRVWLTREG-----DPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC--CcEEEEccccEEEECCC-----CCCCEEECCCCEEEeCCCCEEEEEe
Confidence 356677666665443 34489999999987632 2237899999999999998766543
No 99
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=85.91 E-value=7.8 Score=31.37 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=37.3
Q ss_pred EEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEE
Q 047141 94 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVF 149 (215)
Q Consensus 94 ~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~ 149 (215)
....+++|...-..=.+ ...+.+|++|.+.+...+.++ ++.....+.+||++-.
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEG-KEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEEee
Confidence 34567788765333233 578999999999997766542 4445677899998743
No 100
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=84.14 E-value=1.4 Score=40.23 Aligned_cols=62 Identities=26% Similarity=0.285 Sum_probs=40.4
Q ss_pred EcCCcccCCccCCCCcEEEEEEEcEEEEEEEecC-C--------------CCceEEEEecCCcEEEEcCCCeEEEEeC
Q 047141 98 YAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSN-P--------------DNRLISKVLQKGDVFVFPVGLIHFQRNV 160 (215)
Q Consensus 98 l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~-~--------------~~k~~~~~L~~GDv~v~P~G~~H~~~N~ 160 (215)
..+||...+||-+. +-+++=..|+=+.++.... . ..-....++.|||+.++|+|..|+.+..
T Consensus 126 a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 126 AAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred ecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 47899999999874 4433333444444443221 0 0111245899999999999999998765
No 101
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=82.21 E-value=4.3 Score=27.61 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=32.0
Q ss_pred EEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCc-eEEEEecCCcEE
Q 047141 97 DYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNR-LISKVLQKGDVF 147 (215)
Q Consensus 97 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k-~~~~~L~~GDv~ 147 (215)
.+.+|..+-.. +.....+.+|++|.+.+...+.+ ++ .....+.+||++
T Consensus 3 ~~~~g~~i~~~-g~~~~~~~~i~~G~v~~~~~~~~--~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQ-GDPCDHIYIILSGEVKVSSINED--GKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEET-TSBESEEEEEEESEEEEEEETTT--SEEEEEEEEETTEEE
T ss_pred EECCCCEEEeC-CCcCCEEEEEEECceEEEeceec--ceeeeecceeeeccc
Confidence 45556543221 22258999999999999887664 33 235678888876
No 102
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=81.06 E-value=7.8 Score=33.44 Aligned_cols=87 Identities=24% Similarity=0.285 Sum_probs=59.4
Q ss_pred CCcccEEEEEEEEcCCcc---cCCccCCCCcEEEEEE---EcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEe
Q 047141 86 LNTLGIALARIDYAPWGV---VPPHVHPRATEILTVI---EGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRN 159 (215)
Q Consensus 86 l~~lgvs~~~~~l~pgg~---~ppH~Hp~a~Ei~yVl---~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N 159 (215)
+.+-.+++....++||.+ .|+|.|.|..|..+-. +-+-.+.+-++- .+.+...++--+.++-|+-.+|..
T Consensus 172 ~~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP--~ETRHiv~~NEqAViSP~WSIHSG-- 247 (278)
T COG3717 172 LESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQP--QETRHIVMHNEQAVISPPWSIHSG-- 247 (278)
T ss_pred hhhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCC--CceeEEEEeccceeeCCCceeecC--
Confidence 444456788888999986 5999999988875433 122333333322 233356777778888899999985
Q ss_pred CCCCcEEEEEEEcCCCC
Q 047141 160 VGHGNAFSISGLSSQNP 176 (215)
Q Consensus 160 ~g~~~a~~i~~~~s~~p 176 (215)
.|...-.+|+..-.+|-
T Consensus 248 ~GT~~YtFIWaMaGeN~ 264 (278)
T COG3717 248 VGTANYTFIWAMAGENQ 264 (278)
T ss_pred ccccceEEEEEeccccc
Confidence 56778888888866653
No 103
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.04 E-value=6.6 Score=28.47 Aligned_cols=42 Identities=31% Similarity=0.328 Sum_probs=34.4
Q ss_pred CCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEE
Q 047141 111 RATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQ 157 (215)
Q Consensus 111 ~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~ 157 (215)
.+.|++.|+.|.+++.+.++. . .++..+|+.|.+|.+.-..+
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs~---d--Wq~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGSD---D--WQVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred CCceEEEEEeeEEEEEcCCCc---c--cEEecCCceEEcCCCCeEEE
Confidence 368999999999999886653 3 68999999999999765443
No 104
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=78.18 E-value=9.3 Score=30.72 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=35.6
Q ss_pred EEEEcCCcccCCccCC-CCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEE
Q 047141 95 RIDYAPWGVVPPHVHP-RATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVF 149 (215)
Q Consensus 95 ~~~l~pgg~~ppH~Hp-~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~ 149 (215)
...+++|...-.---+ ....+.+|++|.+++...+++| .+.....+.+||++-.
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G-~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEG-NALTLRYVRPGEYFGE 62 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCC-CEEEEEEecCCCeech
Confidence 3456666543222121 2478999999999998877652 4455667799998754
No 105
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=77.72 E-value=13 Score=25.87 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=36.3
Q ss_pred EEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEc
Q 047141 95 RIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFP 150 (215)
Q Consensus 95 ~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P 150 (215)
...+.+|... .+-......+.+|++|.+.+...+.+ ++......+.+||.+-..
T Consensus 19 ~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~-g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 19 PVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLED-GREQILGILGPGDFFGEL 72 (120)
T ss_pred EEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCC-CceEEEEeecCCceechh
Confidence 3557777654 33333467899999999998876544 244456788899877443
No 106
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=77.37 E-value=33 Score=26.96 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=52.3
Q ss_pred EEEEEEEEcCCcccCCccCCCCcEEEEEEEc-EEEEEEEecCCCCceEEEEec----CCc--EEEEcCCCeEEEEeCCCC
Q 047141 91 IALARIDYAPWGVVPPHVHPRATEILTVIEG-SLEVGFVTSNPDNRLISKVLQ----KGD--VFVFPVGLIHFQRNVGHG 163 (215)
Q Consensus 91 vs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G-~~~~~~~~~~~~~k~~~~~L~----~GD--v~v~P~G~~H~~~N~g~~ 163 (215)
.+..+.-+.++....+|-- +++|+.+...| .+++.+.+++ ++....+|. +|+ .++||+|.....+..+..
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~d--g~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~ 117 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPD--GSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEG 117 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTT--STEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESS
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCC--CCeEEEEECCCCCCCceEEEEECCCEEEEccccCCC
Confidence 4555566778766666654 58999999988 6888888876 554455663 454 789999999988665556
Q ss_pred cEEEEEE
Q 047141 164 NAFSISG 170 (215)
Q Consensus 164 ~a~~i~~ 170 (215)
.-.+++.
T Consensus 118 ~y~Lvsc 124 (139)
T PF06172_consen 118 DYSLVSC 124 (139)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 6665553
No 107
>PHA02984 hypothetical protein; Provisional
Probab=75.37 E-value=19 Score=31.60 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=42.3
Q ss_pred CcEEE--EEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE-EEcCCCC
Q 047141 112 ATEIL--TVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSIS-GLSSQNP 176 (215)
Q Consensus 112 a~Ei~--yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~-~~~s~~p 176 (215)
..|.+ .+++|+.++..... ++..+..+++||.|.+.-+.-|..... +....++. .+.+..|
T Consensus 91 snEy~FvlCl~G~~~I~~~~~---~~~is~~I~kGeaf~md~~t~h~i~T~-~knl~L~Vi~y~v~~p 154 (286)
T PHA02984 91 SNEYMFVLCLNGKTSIECFNK---GSKITNTIKKGEAFTLNLKTKYVTTTK-DKNLHLAVITYTSNCP 154 (286)
T ss_pred eccEEEEEEcCCeEEEEEecC---CceeeeEEecCceEEEEccceEEEEeC-CCceEEEEEEEEecce
Confidence 35554 45679999988654 455689999999999999999998554 34444433 3344443
No 108
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=74.79 E-value=13 Score=25.84 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=34.9
Q ss_pred EEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEE
Q 047141 94 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVF 149 (215)
Q Consensus 94 ~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~ 149 (215)
....+.+|...-.. ......+.+|++|.+.+...++++ .+.....+.+|+.+-.
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDG-REQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCC-cEEEEEecCCccCcCh
Confidence 33456777654222 222477999999999998766541 3345677888887633
No 109
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=74.22 E-value=12 Score=33.63 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=39.4
Q ss_pred EEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEE
Q 047141 91 IALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQ 157 (215)
Q Consensus 91 vs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~ 157 (215)
.++.+.++..-. .-.+ + ++..+++|++|++++... ++ ...|++|+.+++|+...-+.
T Consensus 242 F~l~~~~i~~~~-~~~~-~-~~~~il~v~eG~~~l~~~-----~~--~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 242 FALYKWDISGTA-EFIK-Q-ESFSILLVLEGEGTLIGG-----GQ--TLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred eEEEEEeccChh-hhcc-C-CCcEEEEEEcCeEEEecC-----CE--EEEEcCCcEEEEEcCCCcEE
Confidence 466666655311 1112 2 268999999999998652 23 68999999999999865554
No 110
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=73.92 E-value=18 Score=29.16 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=41.1
Q ss_pred CCccCCCCcEEEEEEEcEE-EEEEEecCC---C-CceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 047141 105 PPHVHPRATEILTVIEGSL-EVGFVTSNP---D-NRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGL 171 (215)
Q Consensus 105 ppH~Hp~a~Ei~yVl~G~~-~~~~~~~~~---~-~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~ 171 (215)
-.=.|+.++|.++-+.|+. .+-++..+. + .++..+.+.+|+.+.+-+|+.|...-.-+++..++.+-
T Consensus 73 ~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~ 144 (165)
T PF04115_consen 73 MLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVD 144 (165)
T ss_dssp EEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEE
T ss_pred eeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEe
Confidence 3445777899999999988 665555431 1 45678999999999999999998754445677776664
No 111
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=73.00 E-value=28 Score=30.65 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=36.5
Q ss_pred CCcEE-EEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEe--CCCCcEEEEE
Q 047141 111 RATEI-LTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRN--VGHGNAFSIS 169 (215)
Q Consensus 111 ~a~Ei-~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N--~g~~~a~~i~ 169 (215)
...|+ ++.+.|++++.+. ++ ++.+.+.|.+++|+|.--.... ....++++..
T Consensus 72 ~rrE~giV~lgG~~~V~vd-----G~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i 126 (276)
T PRK00924 72 ERRELGIINIGGAGTVTVD-----GE--TYELGHRDALYVGKGAKEVVFASADAANPAKFYL 126 (276)
T ss_pred CCcEEEEEEccceEEEEEC-----CE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEE
Confidence 34675 5667899999873 34 5679999999999997766554 2235666654
No 112
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=72.73 E-value=6 Score=35.43 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEEecCCcEEEEcCCCeEEE
Q 047141 137 ISKVLQKGDVFVFPVGLIHFQ 157 (215)
Q Consensus 137 ~~~~L~~GDv~v~P~G~~H~~ 157 (215)
....|+|||.+++|+|.+|..
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred cEEecCCCCEEEecCCCceee
Confidence 367899999999999999997
No 113
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=70.98 E-value=33 Score=27.74 Aligned_cols=66 Identities=12% Similarity=0.013 Sum_probs=48.5
Q ss_pred CCccCCCCcEEEEEEEcEEEEEEEecCCC---CceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 047141 105 PPHVHPRATEILTVIEGSLEVGFVTSNPD---NRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISG 170 (215)
Q Consensus 105 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~---~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~ 170 (215)
..-.||.++|.++-+.|+-.+-++.+.++ .++..+..++|+.+..-+|+.|...-.=+.+..++.+
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~vv 140 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLVV 140 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEEEE
Confidence 44568888999999999988877765321 3467899999999999999999764333444555433
No 114
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=70.97 E-value=15 Score=30.48 Aligned_cols=52 Identities=4% Similarity=0.001 Sum_probs=36.0
Q ss_pred EEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEE
Q 047141 96 IDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVF 149 (215)
Q Consensus 96 ~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~ 149 (215)
..+++|...-.. ......+.+|++|.+++...+.+| .+.....+.+||++-.
T Consensus 34 ~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G-~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 34 FHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANG-KVSLIDFFAAPCFIGE 85 (226)
T ss_pred eeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCC-CEeeeeecCCCCeEEe
Confidence 356777654222 223578999999999998877662 4445567899998764
No 115
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=70.86 E-value=7.8 Score=34.92 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=34.6
Q ss_pred CceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceee
Q 047141 134 NRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVIT 180 (215)
Q Consensus 134 ~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~ 180 (215)
.|-+....++|+++++|.|.-|.+.|...+-|+---.-+.+|.+.+-
T Consensus 260 ~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~Vw 306 (407)
T KOG2130|consen 260 YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFVW 306 (407)
T ss_pred cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCceee
Confidence 45567889999999999999999999865555444344556665554
No 116
>PLN02868 acyl-CoA thioesterase family protein
Probab=70.61 E-value=16 Score=33.51 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=37.3
Q ss_pred EEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEE
Q 047141 94 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVF 149 (215)
Q Consensus 94 ~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~ 149 (215)
....+++|..+-.-=. ....+++|++|++++...+.+ ++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd-~~~~lyiI~~G~V~v~~~~~~--ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGE-PGDGLYFIWKGEAEVSGPAEE--ESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCC-cCceEEEEEeCEEEEEEECCC--CcEEEEEeCCCCEeeh
Confidence 3356777765433223 367899999999999876654 3455678899998874
No 117
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=70.44 E-value=16 Score=32.26 Aligned_cols=46 Identities=2% Similarity=-0.013 Sum_probs=37.4
Q ss_pred cEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCc
Q 047141 113 TEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGN 164 (215)
Q Consensus 113 ~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~ 164 (215)
.-++++.+|.+++...+ +. ...+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~----g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSS----GE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCC----Cc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 56899999999986532 22 478999999999999999998886554
No 118
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=70.26 E-value=3.3 Score=36.53 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=17.9
Q ss_pred EEEecCCcEEEEcCCCeEE
Q 047141 138 SKVLQKGDVFVFPVGLIHF 156 (215)
Q Consensus 138 ~~~L~~GDv~v~P~G~~H~ 156 (215)
...+++||++++|+|.+|.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 5789999999999999998
No 119
>PHA02890 hypothetical protein; Provisional
Probab=67.33 E-value=35 Score=29.80 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=41.6
Q ss_pred CcEEEE--EEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE-EEcCCCC
Q 047141 112 ATEILT--VIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSIS-GLSSQNP 176 (215)
Q Consensus 112 a~Ei~y--Vl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~-~~~s~~p 176 (215)
..|.+| +++|+.++..... ++..+..+++||.|.+.-+.-|.... ....++. -+.+.-|
T Consensus 90 SnEy~FVlCL~Gs~~In~~~~---d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Viky~vd~p 151 (278)
T PHA02890 90 KIECFFVACIEGSCKINVNIG---DREISDHIHENQGFIMDVGLDHAIDS---DNVGLFITKFEVDAH 151 (278)
T ss_pred eccEEEEEEeCCeEEEEEecC---CceeeeeeecCceEEEEccceEEEEc---cceeEEEEEEEecce
Confidence 356554 5689999988654 45578999999999999999999865 3333333 3444444
No 120
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=66.58 E-value=54 Score=28.49 Aligned_cols=67 Identities=12% Similarity=0.027 Sum_probs=42.4
Q ss_pred EEEEEEEcCCcccCCccCCCCcEE-EEEEEcEEEEEEEecCCCCceEEEEecCC--------cEEEEcCCCeEEEEeCCC
Q 047141 92 ALARIDYAPWGVVPPHVHPRATEI-LTVIEGSLEVGFVTSNPDNRLISKVLQKG--------DVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 92 s~~~~~l~pgg~~ppH~Hp~a~Ei-~yVl~G~~~~~~~~~~~~~k~~~~~L~~G--------Dv~v~P~G~~H~~~N~g~ 162 (215)
.+..++|++|.....-.. ..|+ ++.++|++++.+.+ .+ .+.+..- |++++|+|.--.+...++
T Consensus 28 ~~~~l~L~~g~~~~~~~~--~~E~~vv~l~G~~~v~~~g----~~--~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ 99 (261)
T PF04962_consen 28 GFGVLRLEAGESLEFELE--RRELGVVNLGGKATVTVDG----EE--FYELGGRESVFDGPPDALYVPRGTKVVIFASTD 99 (261)
T ss_dssp ECCCEEEECCHCCCCCCC--SEEEEEEEESSSEEEEETT----EE--EEEE-TTSSGGGS--EEEEE-TT--EEEEESST
T ss_pred ceEEEEecCCCEEeccCC--CcEEEEEEeCCEEEEEeCC----ce--EEEecccccccCCCCcEEEeCCCCeEEEEEcCC
Confidence 456678888887655433 3454 66679999998832 12 4566666 999999999988777544
Q ss_pred CcEEEE
Q 047141 163 GNAFSI 168 (215)
Q Consensus 163 ~~a~~i 168 (215)
+.+.
T Consensus 100 --ae~~ 103 (261)
T PF04962_consen 100 --AEFA 103 (261)
T ss_dssp --EEEE
T ss_pred --CEEE
Confidence 4444
No 121
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=65.11 E-value=6.7 Score=36.13 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=19.6
Q ss_pred eEEEEecCCcEEEEcCCCeEEE
Q 047141 136 LISKVLQKGDVFVFPVGLIHFQ 157 (215)
Q Consensus 136 ~~~~~L~~GDv~v~P~G~~H~~ 157 (215)
+....|++||++++|+|.+|..
T Consensus 236 LN~v~l~pGeaifipAg~~HAy 257 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAY 257 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEE
Confidence 3467899999999999999996
No 122
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=62.15 E-value=27 Score=29.61 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=58.6
Q ss_pred cccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCcee--
Q 047141 102 GVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSSQNPGVI-- 179 (215)
Q Consensus 102 g~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~-- 179 (215)
|....|| ++-..+|++|+...... ++....+.++||..+.|+|......-. +.+-++.--..--|...
T Consensus 112 GhsGrh~---ad~y~tIL~G~~~~~~~-----g~~~~evy~pGd~~~l~rg~a~~y~m~--~~tw~LEY~RG~IP~~lpf 181 (216)
T PF04622_consen 112 GHSGRHW---ADDYFTILSGEQWAWSP-----GSLEPEVYKPGDSHHLPRGEAKQYQMP--PGTWALEYGRGWIPSMLPF 181 (216)
T ss_pred CCCcceE---eeeEEEEEEEEEEEEcC-----CCCCceEeccCCEEEecCceEEEEEeC--CCeEEEEecCCchhhhhHH
Confidence 4455665 57789999999876442 333478899999999999998876554 22333321111122211
Q ss_pred eecchhccCCCCCCHHHHHHHcCCCHHH
Q 047141 180 TIANTVFGSNPAIADDLLAKAFQVDKSV 207 (215)
Q Consensus 180 ~~~~~~f~~~p~~p~~vla~af~~~~~~ 207 (215)
-+++++|+. ++-..+-++..+..++
T Consensus 182 ~~~dt~~sT---lDf~t~~~T~~~~~~~ 206 (216)
T PF04622_consen 182 GFADTLFST---LDFPTLYRTVYITARE 206 (216)
T ss_pred HHHHHHHhc---cchHHHHHHHHHHHHH
Confidence 233667776 7777777777766544
No 123
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=60.19 E-value=35 Score=26.98 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=39.5
Q ss_pred CCccCCCCcEEEEEEEcEEEEEEEecCC-----------------CCceEEEEecCCcEEEEcCCCeEEEE
Q 047141 105 PPHVHPRATEILTVIEGSLEVGFVTSNP-----------------DNRLISKVLQKGDVFVFPVGLIHFQR 158 (215)
Q Consensus 105 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~-----------------~~k~~~~~L~~GDv~v~P~G~~H~~~ 158 (215)
.+=.|.+=..+-|+++|+-.+++..... +.. ....|++|+..+|.++.+|.-.
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~-~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCG-ETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCC-cEEEeCCCeEEEECCcccccCC
Confidence 4455777788999999999998854321 111 2578999999999999999864
No 124
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=58.55 E-value=30 Score=24.49 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=37.1
Q ss_pred EEcCCcccCCccCC---CCcEEEEE--EE-cE-----EEEEEEecC-CCCceEEEE-----ecCCcEEEEcC-CCeEEEE
Q 047141 97 DYAPWGVVPPHVHP---RATEILTV--IE-GS-----LEVGFVTSN-PDNRLISKV-----LQKGDVFVFPV-GLIHFQR 158 (215)
Q Consensus 97 ~l~pgg~~ppH~Hp---~a~Ei~yV--l~-G~-----~~~~~~~~~-~~~k~~~~~-----L~~GDv~v~P~-G~~H~~~ 158 (215)
.+.+|+...||+.. ....+.++ +. -. +...+.... .+....... .++|++++|+. ...|...
T Consensus 5 ~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v~ 84 (100)
T PF13640_consen 5 RYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGVT 84 (100)
T ss_dssp EEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEEE
T ss_pred EECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecCc
Confidence 46889999999876 33444333 33 11 333444310 001212233 88999999999 9999986
Q ss_pred eC
Q 047141 159 NV 160 (215)
Q Consensus 159 N~ 160 (215)
-.
T Consensus 85 ~v 86 (100)
T PF13640_consen 85 PV 86 (100)
T ss_dssp EE
T ss_pred cc
Confidence 66
No 125
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=56.43 E-value=1.3e+02 Score=26.03 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=54.7
Q ss_pred ceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecC-C--CCceEEEEecCCcEEEE
Q 047141 73 SRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSN-P--DNRLISKVLQKGDVFVF 149 (215)
Q Consensus 73 ~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~-~--~~k~~~~~L~~GDv~v~ 149 (215)
+.+..++..+ ++..- +.+..+++.+|.....-.-.+ +-++.+++|++++...+.. + +.|.-.++=++=|++++
T Consensus 14 g~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYv 89 (270)
T COG3718 14 GLVQDVTPES-AGWEY--VGFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYV 89 (270)
T ss_pred cceEEecCCC-CCcee--EEEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEe
Confidence 3455555333 34432 455666789998776665553 5567778999998764432 0 12322344556799999
Q ss_pred cCCCeEEEEeCCCC
Q 047141 150 PVGLIHFQRNVGHG 163 (215)
Q Consensus 150 P~G~~H~~~N~g~~ 163 (215)
|.|........++-
T Consensus 90 p~g~~~~vtA~t~~ 103 (270)
T COG3718 90 PAGSAFSVTATTDL 103 (270)
T ss_pred cCCceEEEEeecce
Confidence 99999888766543
No 126
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=55.56 E-value=14 Score=33.94 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=44.5
Q ss_pred CCcccCCc---cCCCCcEEEEEEEcEEEEEEEecCC-----------------------CCceEEEEecCCcEEEEcCCC
Q 047141 100 PWGVVPPH---VHPRATEILTVIEGSLEVGFVTSNP-----------------------DNRLISKVLQKGDVFVFPVGL 153 (215)
Q Consensus 100 pgg~~ppH---~Hp~a~Ei~yVl~G~~~~~~~~~~~-----------------------~~k~~~~~L~~GDv~v~P~G~ 153 (215)
.|...|.| +|. .-+...+.|+=+.-+..+.+ ..+..+..=++|+.+++|.|.
T Consensus 207 ~gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 207 AGSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred CCCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCcc
Confidence 46678999 774 56677788887776665531 011123345799999999999
Q ss_pred eEEEEeCCCC
Q 047141 154 IHFQRNVGHG 163 (215)
Q Consensus 154 ~H~~~N~g~~ 163 (215)
-|...|.+++
T Consensus 285 ~hQV~NL~dT 294 (427)
T KOG2131|consen 285 HHQVLNLGDT 294 (427)
T ss_pred ccccccccce
Confidence 9999999875
No 127
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=55.04 E-value=47 Score=26.11 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=37.0
Q ss_pred EEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcC
Q 047141 94 ARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPV 151 (215)
Q Consensus 94 ~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~ 151 (215)
....+++|...-..--+ +.-+.+|++|.+.+....++| .+.....+.+||.+-...
T Consensus 24 ~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G-~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 24 EVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDG-REIILGFLGPGDFFGELA 79 (214)
T ss_pred eeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCC-cEEEEEEecCCchhhhHH
Confidence 33456666444333333 455899999999999887652 344456789999886654
No 128
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=54.89 E-value=47 Score=27.36 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=33.7
Q ss_pred EEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEE
Q 047141 97 DYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVF 149 (215)
Q Consensus 97 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~ 149 (215)
.+++|...-.- -.....+.+|++|.+.+...++++ ++.....+.+||++-.
T Consensus 41 ~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G-~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 41 PIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQG-DEQITGFHLAGDLVGF 91 (235)
T ss_pred eecCCCEeECC-CCCcceEEEEeeceEEEEEECCCC-CEEEEEeccCCceecc
Confidence 46666543222 223577899999999998877652 4444556689998854
No 129
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=53.87 E-value=31 Score=27.28 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=27.5
Q ss_pred CcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEE
Q 047141 112 ATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFV 148 (215)
Q Consensus 112 a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v 148 (215)
...+.+|++|.+.+...+++| .+.....+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G-~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESG-EEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCC-cEeeeEEccCCCEee
Confidence 467899999999998877652 444467789999774
No 130
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=53.55 E-value=43 Score=26.15 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=44.8
Q ss_pred CCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEE----EcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEE
Q 047141 83 IPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVI----EGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQR 158 (215)
Q Consensus 83 ~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl----~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~ 158 (215)
-|+++.+ ...++.+++|..... .+..|+..++ .|++.+++.++. -..++|||++-+-.|....++
T Consensus 11 ~P~~kN~--~v~fIvl~~g~~tkT---kdg~~v~~~kVaD~TgsI~isvW~e~------~~~~~PGDIirLt~Gy~Si~q 79 (134)
T KOG3416|consen 11 KPGLKNI--NVTFIVLEYGRATKT---KDGHEVRSCKVADETGSINISVWDEE------GCLIQPGDIIRLTGGYASIFQ 79 (134)
T ss_pred Chhhhcc--eEEEEEEeeceeeec---cCCCEEEEEEEecccceEEEEEecCc------CcccCCccEEEecccchhhhc
Confidence 3677744 566666777754322 1345665554 578889998754 346999999999999877665
Q ss_pred e
Q 047141 159 N 159 (215)
Q Consensus 159 N 159 (215)
+
T Consensus 80 g 80 (134)
T KOG3416|consen 80 G 80 (134)
T ss_pred C
Confidence 4
No 131
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=52.82 E-value=61 Score=25.43 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=36.5
Q ss_pred EEEEEEEEcCC--cccCCccCCCCcEEEEEEEcEEEEEEEe-cCC------------------CCceEEEEecCCcEEEE
Q 047141 91 IALARIDYAPW--GVVPPHVHPRATEILTVIEGSLEVGFVT-SNP------------------DNRLISKVLQKGDVFVF 149 (215)
Q Consensus 91 vs~~~~~l~pg--g~~ppH~Hp~a~Ei~yVl~G~~~~~~~~-~~~------------------~~k~~~~~L~~GDv~v~ 149 (215)
+.+...+.... .-..+=.|.+=..+-|+++|+-++++.. ... +.......|++|+.++|
T Consensus 46 ~~~~v~~~~t~~~~~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~if 125 (153)
T PF04074_consen 46 LFANVQEYETKPEEERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIF 125 (153)
T ss_dssp -EEEEE--B-B-GGGS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE
T ss_pred EEEEeeccccccccccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEE
Confidence 44444444333 3345667887788999999999999832 210 11112457999999999
Q ss_pred cCCCeEEE
Q 047141 150 PVGLIHFQ 157 (215)
Q Consensus 150 P~G~~H~~ 157 (215)
-++.+|.-
T Consensus 126 fP~d~H~p 133 (153)
T PF04074_consen 126 FPEDAHRP 133 (153)
T ss_dssp -TT--EEE
T ss_pred CCCccccc
Confidence 99999985
No 132
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=52.35 E-value=1.7e+02 Score=26.43 Aligned_cols=63 Identities=11% Similarity=0.168 Sum_probs=45.4
Q ss_pred cCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcC
Q 047141 104 VPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGLSS 173 (215)
Q Consensus 104 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~~s 173 (215)
...-+..+++-++.-.+|.+.+.. +- +| ..+.++++.+||+|.-..+--.|...-.++.++..
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~T--Ef--Gr---llV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~ 209 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITT--EF--GR---LLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGA 209 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEe--ec--cc---eeecccceEEeecccEEEEecCCCCcceEEEEecc
Confidence 344455555656666678877654 22 33 57899999999999998887777788888888764
No 133
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.18 E-value=6.6 Score=33.34 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=52.2
Q ss_pred cEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecC-C--------CCceEEEEecC--------CcEEEEcC-
Q 047141 90 GIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSN-P--------DNRLISKVLQK--------GDVFVFPV- 151 (215)
Q Consensus 90 gvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~-~--------~~k~~~~~L~~--------GDv~v~P~- 151 (215)
+.|+...-+.|++++|.|-||.-+-+.=++=|++.+.-.+-- + ...++...|+. +-.+.-|+
T Consensus 74 ~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~ePd~~~~~dp~q~~r~akl~~d~~~T~~s~~~~LyP~~ 153 (236)
T KOG4281|consen 74 RFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWVEPDEPQTEDPHQPVRPAKLVSDKEFTAASPASTLYPKT 153 (236)
T ss_pred ceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeeccccCCCCcccCCCCcceeeeeEeccceecCCCCCcEeeecC
Confidence 568888899999999999999877777888899887554311 1 01122222222 22344554
Q ss_pred -CCeEEEEeCCCCcEEEEEEEc
Q 047141 152 -GLIHFQRNVGHGNAFSISGLS 172 (215)
Q Consensus 152 -G~~H~~~N~g~~~a~~i~~~~ 172 (215)
|..|.+...+ ++.++-+++
T Consensus 154 ggn~h~f~a~t--~cAvlDILs 173 (236)
T KOG4281|consen 154 GGNHHCFTAIT--PCAVLDILS 173 (236)
T ss_pred CCcEeeeeecc--ceeEEeecc
Confidence 5666665543 777777775
No 134
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=49.80 E-value=77 Score=26.08 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=35.2
Q ss_pred EEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEE
Q 047141 95 RIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVF 149 (215)
Q Consensus 95 ~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~ 149 (215)
...+++|...- +-......+.+|++|.+.+.....+ ++.....+.+||++-.
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~--~~~~i~~~~~g~~~g~ 83 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQD--RETTLAILRPVSTFIL 83 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCC--ceEEEEEeCCCchhhh
Confidence 34577776543 3344468899999999999765432 4445678889997643
No 135
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=49.68 E-value=20 Score=28.30 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHcCCCHHHHHHhhhc
Q 047141 190 PAIADDLLAKAFQVDKSVVGQLQTK 214 (215)
Q Consensus 190 p~~p~~vla~af~~~~~~v~~lk~~ 214 (215)
|.++++-||++|++++|.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 4599999999999999999999763
No 136
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=49.02 E-value=62 Score=26.03 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=42.3
Q ss_pred ccCCccCCCCcEEEEEEEcEEEEEEEecCC------------------CCceEEEEecCCcEEEEcCCCeEEEEeCC
Q 047141 103 VVPPHVHPRATEILTVIEGSLEVGFVTSNP------------------DNRLISKVLQKGDVFVFPVGLIHFQRNVG 161 (215)
Q Consensus 103 ~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~------------------~~k~~~~~L~~GDv~v~P~G~~H~~~N~g 161 (215)
..-+-.|.+=-.+-++++|+=.+++....+ .......+|.+|+..+|=+|.+|.-.-..
T Consensus 60 ~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~ 136 (154)
T COG2731 60 EKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNV 136 (154)
T ss_pred hcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCcccccccc
Confidence 344555666689999999999988865431 00123578999999999999999764443
No 137
>PF13994 PgaD: PgaD-like protein
Probab=48.33 E-value=22 Score=27.77 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.1
Q ss_pred CCCHHHHHHHcCCCHHHHHHhhh
Q 047141 191 AIADDLLAKAFQVDKSVVGQLQT 213 (215)
Q Consensus 191 ~~p~~vla~af~~~~~~v~~lk~ 213 (215)
+++++-+|+.|++++++++++++
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~ 122 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQ 122 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHh
Confidence 38999999999999999999975
No 138
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=47.95 E-value=1.2e+02 Score=23.51 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=20.5
Q ss_pred ccCCccCCCCcEEEEEEEcEEEEEEE
Q 047141 103 VVPPHVHPRATEILTVIEGSLEVGFV 128 (215)
Q Consensus 103 ~~ppH~Hp~a~Ei~yVl~G~~~~~~~ 128 (215)
-..+=.|.+=..+-|+++|+-++++.
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEe
Confidence 34455676678899999999999985
No 139
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=46.00 E-value=1.4e+02 Score=24.36 Aligned_cols=67 Identities=9% Similarity=-0.027 Sum_probs=48.0
Q ss_pred CCccCCCCcEEEEEEEc-EEEEEEEecCC---CCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 047141 105 PPHVHPRATEILTVIEG-SLEVGFVTSNP---DNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSISGL 171 (215)
Q Consensus 105 ppH~Hp~a~Ei~yVl~G-~~~~~~~~~~~---~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i~~~ 171 (215)
..-.||.+++.+.-+.| ...+-++.+++ -..+..+....|+.+..-+|+.|...-.=+.+..++.+-
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvd 142 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVD 142 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEEe
Confidence 33457878999888998 76666665431 134678999999999999999998755445556666553
No 140
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=45.74 E-value=97 Score=21.24 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=33.5
Q ss_pred EEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 047141 118 VIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSI 168 (215)
Q Consensus 118 Vl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i 168 (215)
-..|...+++.+.+ +..++...+++||..-+..+..-. ...|+-.++-+
T Consensus 4 ~a~~~sWv~V~d~d-G~~~~~~~l~~G~~~~~~~~~~~~-i~iGna~~v~v 52 (77)
T PF13464_consen 4 TATGDSWVEVTDAD-GKVLFSGTLKAGETKTFEGKEPFR-IRIGNAGAVEV 52 (77)
T ss_pred EEeCCeEEEEEeCC-CcEeeeeeeCCCcEEEEeCCCCEE-EEEeCCCcEEE
Confidence 44577888887655 257789999999999885444433 45566555544
No 141
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=44.24 E-value=27 Score=28.08 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHcCCCHHHHHHhhh
Q 047141 190 PAIADDLLAKAFQVDKSVVGQLQT 213 (215)
Q Consensus 190 p~~p~~vla~af~~~~~~v~~lk~ 213 (215)
|.+++|-+|+.|+++++.++++++
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~ 120 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKS 120 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHh
Confidence 559999999999999999999976
No 142
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=43.51 E-value=1.4e+02 Score=27.26 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=60.5
Q ss_pred CCceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCc-eEEEEecCCcEE--
Q 047141 71 LGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNR-LISKVLQKGDVF-- 147 (215)
Q Consensus 71 ~g~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k-~~~~~L~~GDv~-- 147 (215)
.|..|..++.+- ++--+.+.|++++..-+...+..-++..+-.++|..-++.++.++ ++ +-...|++||-+
T Consensus 251 sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~d--G~~vsVt~Lk~GD~VL~ 324 (344)
T PRK02290 251 SGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPD--GKPVSVVDLKPGDEVLG 324 (344)
T ss_pred CCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCC--CCEeeeeecCCCCEEEE
Confidence 466666665432 223467888888887776666655679999999999999999886 44 346799999955
Q ss_pred EEcCCCeEEEEeC
Q 047141 148 VFPVGLIHFQRNV 160 (215)
Q Consensus 148 v~P~G~~H~~~N~ 160 (215)
+++.+--|+-...
T Consensus 325 ~~~~~~RHfG~~i 337 (344)
T PRK02290 325 YLEEAARHFGMAI 337 (344)
T ss_pred EecCCccccccee
Confidence 5567777876444
No 143
>PLN02288 mannose-6-phosphate isomerase
Probab=37.58 E-value=27 Score=32.32 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=18.5
Q ss_pred EEEecCCcEEEEcCCCeEEE
Q 047141 138 SKVLQKGDVFVFPVGLIHFQ 157 (215)
Q Consensus 138 ~~~L~~GDv~v~P~G~~H~~ 157 (215)
...|++||.+++|+|.+|..
T Consensus 252 ~v~L~PGeaifl~ag~~HAY 271 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAY 271 (394)
T ss_pred eEecCCCCEEEecCCCCcee
Confidence 47899999999999999986
No 144
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=37.10 E-value=75 Score=31.96 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=33.4
Q ss_pred EEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEE
Q 047141 93 LARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVF 147 (215)
Q Consensus 93 ~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~ 147 (215)
+....+.||..+-.-=.+ +.++.+|++|++.+... .+ +++.....+++||.|
T Consensus 397 ~~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~-~~-~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDS-EG-EKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCCC-CceEEEEEecEEEEEEe-cC-CcceeeEEccCCCEe
Confidence 334457777654222223 57899999999998542 22 244445789999977
No 145
>PHA00672 hypothetical protein
Probab=36.60 E-value=2.1e+02 Score=22.48 Aligned_cols=74 Identities=11% Similarity=-0.026 Sum_probs=52.9
Q ss_pred ccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 047141 89 LGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGHGNAFSI 168 (215)
Q Consensus 89 lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~i 168 (215)
.|+....+.++.|....--.|. -|-+++.+|.+++... +. .+.|+.--++.-|+|--...+.- ++..+.
T Consensus 45 ~GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~td-----ge--~~rl~g~~~i~~~aG~KragyAH--eDT~wt 113 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIG-----GE--AVELRGYHVIPASAGRKQAFVAH--ADTDLT 113 (152)
T ss_pred cceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeC-----Cc--EEEEecceeeecCCCcccceeee--ccceEE
Confidence 3788888999999887777775 4555999999998763 22 56788778888888876665553 444555
Q ss_pred EEEcC
Q 047141 169 SGLSS 173 (215)
Q Consensus 169 ~~~~s 173 (215)
.++-+
T Consensus 114 ~~h~s 118 (152)
T PHA00672 114 MLFPS 118 (152)
T ss_pred EEecc
Confidence 55543
No 146
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=35.88 E-value=2.1e+02 Score=22.34 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=39.5
Q ss_pred cEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEe---CCCCcEEEEEEE
Q 047141 113 TEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRN---VGHGNAFSISGL 171 (215)
Q Consensus 113 ~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N---~g~~~a~~i~~~ 171 (215)
.-+.+|++|+=++.+. ++ .+...+|+.++.+.+++-..+- ..++|...+.+-
T Consensus 24 p~i~~vlQG~K~~~~g-----~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ 78 (155)
T PF06719_consen 24 PSICIVLQGSKRVHLG-----DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLE 78 (155)
T ss_pred CeEEEEEeeeEEEEEC-----Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEE
Confidence 5689999999998884 23 6889999999999998765533 345676666543
No 147
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=34.25 E-value=26 Score=23.48 Aligned_cols=28 Identities=14% Similarity=0.443 Sum_probs=19.6
Q ss_pred hhccCCCCCCHHHHHHHcCCCHHHHHHhhhcC
Q 047141 184 TVFGSNPAIADDLLAKAFQVDKSVVGQLQTKF 215 (215)
Q Consensus 184 ~~f~~~p~~p~~vla~af~~~~~~v~~lk~~~ 215 (215)
.-+|+ .+.-|.+.+|++++++++||+++
T Consensus 40 ~~yGs----~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 40 ERYGS----VENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHSS----HHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHcCC----HHHHHHHcCCCCHHHHHHHHHHc
Confidence 34564 67788899999999999999763
No 148
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=34.21 E-value=83 Score=24.52 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=19.6
Q ss_pred ceEEEEecCCcEEEEcCCCeEEEEe
Q 047141 135 RLISKVLQKGDVFVFPVGLIHFQRN 159 (215)
Q Consensus 135 k~~~~~L~~GDv~v~P~G~~H~~~N 159 (215)
......+++||++++...++|.-..
T Consensus 178 ~~~~~~~~~Gdvl~~~~~~~H~s~~ 202 (211)
T PF05721_consen 178 EWVPVPMKAGDVLFFHSRLIHGSGP 202 (211)
T ss_dssp GCEEE-BSTTEEEEEETTSEEEEE-
T ss_pred ceEEeecCCCeEEEEcCCccccCCC
Confidence 3356789999999999999998743
No 149
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=32.78 E-value=53 Score=20.22 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=17.7
Q ss_pred CCHHHHHHHcCCCHHHHHHhhhcC
Q 047141 192 IADDLLAKAFQVDKSVVGQLQTKF 215 (215)
Q Consensus 192 ~p~~vla~af~~~~~~v~~lk~~~ 215 (215)
.+..-+++.+|++..+|.+..++|
T Consensus 18 ~s~~~ia~~lgvs~~Tv~~w~kr~ 41 (50)
T PF13384_consen 18 WSIREIAKRLGVSRSTVYRWIKRY 41 (50)
T ss_dssp --HHHHHHHHTS-HHHHHHHHT--
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHc
Confidence 788899999999999999987764
No 150
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=32.39 E-value=1e+02 Score=20.41 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=22.6
Q ss_pred EEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 124 EVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 124 ~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
++++-++. ++.++..|++|..+..-+|.++.-.-.|.
T Consensus 11 rVQlTD~K--gr~~Ti~L~~G~~fhThrG~i~HDdlIG~ 47 (54)
T PF14801_consen 11 RVQLTDPK--GRKHTITLEPGGEFHTHRGAIRHDDLIGR 47 (54)
T ss_dssp EEEEEETT----EEEEE--TT-EEEETTEEEEHHHHTT-
T ss_pred EEEEccCC--CCeeeEEECCCCeEEcCccccchhheecC
Confidence 45666665 67789999999999999988765444443
No 151
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.70 E-value=76 Score=31.82 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=33.8
Q ss_pred EEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEE
Q 047141 97 DYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVF 147 (215)
Q Consensus 97 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~ 147 (215)
.+.||..+-..=.+ -+|+++|++|++++.-.+ +++......|++||.+
T Consensus 446 ~f~pge~iireGd~-v~~myFI~rG~le~~~~~--~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDP-VTDMYFIVRGSLESITTD--GGGFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCc-cceeEEEEeeeEEEEEcc--CCceEEEEEecCCCcc
Confidence 35666655555556 589999999999875433 2244457899999987
No 152
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.42 E-value=94 Score=29.74 Aligned_cols=46 Identities=26% Similarity=0.361 Sum_probs=30.4
Q ss_pred EEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCceEEEEecCCcEE
Q 047141 97 DYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVF 147 (215)
Q Consensus 97 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~ 147 (215)
.+.||..+-.-= .-+.|+.+|.+|.+.+ ++++ ++..-.+|++|++|
T Consensus 334 vfSPgDyICrKG-dvgkEMyIVk~G~L~V--v~dD--g~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 334 VFSPGDYICRKG-DVGKEMYIVKEGKLAV--VADD--GVTVFVTLKAGSVF 379 (536)
T ss_pred eeCCCCeEEecC-cccceEEEEEccEEEE--EecC--CcEEEEEecCCcee
Confidence 345554332221 2378999999999987 4444 44456789999877
No 153
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=30.97 E-value=35 Score=20.04 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=17.0
Q ss_pred CCHHHHHHHcCCCHHHHHHhhhc
Q 047141 192 IADDLLAKAFQVDKSVVGQLQTK 214 (215)
Q Consensus 192 ~p~~vla~af~~~~~~v~~lk~~ 214 (215)
++.+-+|...|+..|+|.++-++
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~ 25 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKK 25 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHH
Confidence 67788999999999999887554
No 154
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=30.90 E-value=53 Score=29.80 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=54.0
Q ss_pred cCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCC----------------------C------
Q 047141 82 QIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNP----------------------D------ 133 (215)
Q Consensus 82 ~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~----------------------~------ 133 (215)
.+|+.++-++.+.....+.|.+.|.|.-+. ..++.=+.|+.++.+.-+.. +
T Consensus 241 ~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~ 319 (355)
T KOG2132|consen 241 SFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPK 319 (355)
T ss_pred ecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhH
Confidence 455555544555554455588999998885 78888889999988865431 0
Q ss_pred ---CceEEEEecCCcEEEEcCCCeEEEEeC
Q 047141 134 ---NRLISKVLQKGDVFVFPVGLIHFQRNV 160 (215)
Q Consensus 134 ---~k~~~~~L~~GDv~v~P~G~~H~~~N~ 160 (215)
.+.....|++||++++|+-.-|+.+..
T Consensus 320 ~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 320 FAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred HHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 111234788999999999999987543
No 155
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=30.83 E-value=1.7e+02 Score=26.85 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=59.8
Q ss_pred CCceEEEeeeccCCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEEEEEecCCCCc-eEEEEecCCcEE--
Q 047141 71 LGSRVTPVTVAQIPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEVGFVTSNPDNR-LISKVLQKGDVF-- 147 (215)
Q Consensus 71 ~g~~v~~~~~~~~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~k-~~~~~L~~GDv~-- 147 (215)
.|..|..++.+- ++.-+.+.|++++..-+...+..-++.++-.++|..-++.++.++ ++ +-...|++||-+
T Consensus 261 sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~--G~~vsVt~Lk~GD~vL~ 334 (354)
T PF01959_consen 261 SGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPD--GEPVSVTELKPGDEVLV 334 (354)
T ss_pred CCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCC--CCEeeeeecCCCCEEEE
Confidence 466666665332 122467888888877766555555789999999999999999876 44 345789999955
Q ss_pred EEcCCCeEEEEeC
Q 047141 148 VFPVGLIHFQRNV 160 (215)
Q Consensus 148 v~P~G~~H~~~N~ 160 (215)
++..+--|+....
T Consensus 335 ~~~~~~RHfG~~I 347 (354)
T PF01959_consen 335 YLEEAGRHFGMKI 347 (354)
T ss_pred EecCCCcccceEe
Confidence 5577778876554
No 156
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=30.31 E-value=51 Score=23.88 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=14.8
Q ss_pred ChhHHHHHHHHHHHHhHHhhc
Q 047141 1 MAKNILVLSLLVITCALVAAF 21 (215)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (215)
||..++++-||++.+..++|+
T Consensus 1 MaRRlwiLslLAVtLtVALAA 21 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAA 21 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhc
Confidence 888877777777776666554
No 157
>COG1741 Pirin-related protein [General function prediction only]
Probab=29.94 E-value=3.8e+02 Score=23.51 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=29.1
Q ss_pred CCCCCcccEEEEEEEEcCCcccCCccCCCCcEEEEEEEcEEEE
Q 047141 83 IPGLNTLGIALARIDYAPWGVVPPHVHPRATEILTVIEGSLEV 125 (215)
Q Consensus 83 ~P~l~~lgvs~~~~~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~ 125 (215)
.|.-+.. +....+.+++|+..+.+ -+.-.-++||++|++++
T Consensus 166 ~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v 206 (276)
T COG1741 166 SPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEV 206 (276)
T ss_pred cccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEE
Confidence 4444444 67788888999887776 22335679999998887
No 158
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=29.34 E-value=1.5e+02 Score=25.30 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEecCCcEEEEcCCCeEEEEeC
Q 047141 138 SKVLQKGDVFVFPVGLIHFQRNV 160 (215)
Q Consensus 138 ~~~L~~GDv~v~P~G~~H~~~N~ 160 (215)
...+++|++++||...+|...-.
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pV 164 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPV 164 (226)
T ss_pred EEecCCCeEEEECCCCceeeeec
Confidence 67889999999999999998664
No 159
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=27.89 E-value=55 Score=25.10 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=18.6
Q ss_pred CCCHHHHHHHcCCCHHHHHHhhhc
Q 047141 191 AIADDLLAKAFQVDKSVVGQLQTK 214 (215)
Q Consensus 191 ~~p~~vla~af~~~~~~v~~lk~~ 214 (215)
++++..+|+..++++++|++++++
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~ 95 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKE 95 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHH
T ss_pred CCCHHHHHhccCCCHHHHHHHHHH
Confidence 399999999999999999998764
No 160
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=26.73 E-value=64 Score=32.57 Aligned_cols=78 Identities=18% Similarity=0.148 Sum_probs=46.8
Q ss_pred EEEcCCccc-CCccCCCCcEEEEEEEcEEEEE-----EEecC-------C--CCceEEEEecCCcEEEEcCCCeEEEEeC
Q 047141 96 IDYAPWGVV-PPHVHPRATEILTVIEGSLEVG-----FVTSN-------P--DNRLISKVLQKGDVFVFPVGLIHFQRNV 160 (215)
Q Consensus 96 ~~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~~~-----~~~~~-------~--~~k~~~~~L~~GDv~v~P~G~~H~~~N~ 160 (215)
..+.+|+.. --|.+. +.-+.|-+.++-.-- +.... | ..+-+...|++|+.++||.|.+|..+-.
T Consensus 141 fhidfggtsvwyhil~-G~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV~Tp 219 (776)
T KOG1633|consen 141 FHIDFGGTSVWYHILA-GEKTFYLIPPTCENLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAVLTP 219 (776)
T ss_pred cccCCCCcchhhhhhc-cccceeeeCCcccchhhhhhhhhcccccccccCCccceeEEEEeccCceEecccceeEeeecC
Confidence 345666654 346665 466677666653210 00000 0 1334567899999999999999999877
Q ss_pred CCCcEEEEEEEcCC
Q 047141 161 GHGNAFSISGLSSQ 174 (215)
Q Consensus 161 g~~~a~~i~~~~s~ 174 (215)
-+.-+...-++.+.
T Consensus 220 ~d~l~fgGnflhsl 233 (776)
T KOG1633|consen 220 TDCLVFGGNFLHSL 233 (776)
T ss_pred cchheeccchhhhh
Confidence 55555444444443
No 161
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=25.58 E-value=25 Score=35.47 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.4
Q ss_pred EEEecCCcEEEEcCCCeEEEEeCCC
Q 047141 138 SKVLQKGDVFVFPVGLIHFQRNVGH 162 (215)
Q Consensus 138 ~~~L~~GDv~v~P~G~~H~~~N~g~ 162 (215)
+++=..||.++||+|.+|.++|.-.
T Consensus 800 tfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 800 TFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred chhhcccceEEecCCCcHHhhhhhh
Confidence 5666789999999999999999743
No 162
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=23.18 E-value=90 Score=21.16 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=7.6
Q ss_pred ChhHHHHHHHHHHH
Q 047141 1 MAKNILVLSLLVIT 14 (215)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (215)
||+.|+++.||.++
T Consensus 1 MA~Kl~vialLC~a 14 (65)
T PF10731_consen 1 MASKLIVIALLCVA 14 (65)
T ss_pred CcchhhHHHHHHHH
Confidence 78875544443333
No 163
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=22.37 E-value=1.8e+02 Score=23.84 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=32.6
Q ss_pred EEEEEEEcEEEEEEEecCCCCceEEEEecCCcEEEEcCCCeEEEEe
Q 047141 114 EILTVIEGSLEVGFVTSNPDNRLISKVLQKGDVFVFPVGLIHFQRN 159 (215)
Q Consensus 114 Ei~yVl~G~~~~~~~~~~~~~k~~~~~L~~GDv~v~P~G~~H~~~N 159 (215)
-+..-++|++.+-+... +.++..+|.+|+-+++..+.+-.+..
T Consensus 131 ~~~~~l~G~G~v~l~~~---G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 131 LFMLKLSGRGTVFLSGY---GAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp EEEEEEESSCEEEEEEC---CSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred cEEEEEEEEEEEEEEeC---CcEEEEEccCCceEEEcCCCEEEECC
Confidence 44566789999887664 67788999999999999888776643
No 164
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=20.98 E-value=1.2e+02 Score=26.21 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=26.9
Q ss_pred EEEecCCcEEEEcCCCeEEE-EeCCC-CcEEEEEEEcCC
Q 047141 138 SKVLQKGDVFVFPVGLIHFQ-RNVGH-GNAFSISGLSSQ 174 (215)
Q Consensus 138 ~~~L~~GDv~v~P~G~~H~~-~N~g~-~~a~~i~~~~s~ 174 (215)
...+++||++++..-++|.- .|.++ ....++..|++.
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~ 250 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSV 250 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecC
Confidence 46789999999999999977 45544 345555566643
No 165
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=20.20 E-value=98 Score=19.37 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=18.8
Q ss_pred cCCCCCCHHHHHHHcCCCHHHHHH
Q 047141 187 GSNPAIADDLLAKAFQVDKSVVGQ 210 (215)
Q Consensus 187 ~~~p~~p~~vla~af~~~~~~v~~ 210 (215)
.++.+++.+-||..++++..+|.+
T Consensus 11 ~~~~~it~~eLa~~l~vS~rTi~~ 34 (55)
T PF08279_consen 11 ESKEPITAKELAEELGVSRRTIRR 34 (55)
T ss_dssp HTTTSBEHHHHHHHCTS-HHHHHH
T ss_pred HcCCCcCHHHHHHHhCCCHHHHHH
Confidence 444459999999999999988775
Done!