BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047142
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 22/127 (17%)
Query: 86 QEKTNSDNDPDDIQWLDSQPVDFVLNISLGSFLSVSSAQMDEILAGLQMSGVRFLRVARG 145
+++ + + ++WLD+QP+ VL +S GS +++ Q++E+ GL S RFL V R
Sbjct: 247 KQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRS 306
Query: 146 DASRLNQTCGDT---------------------GQILPWSWCDQLRISCHSSAGGFLTHR 184
+ N + D+ G ++P+ W Q ++ H S GGFLTH
Sbjct: 307 PSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPF-WAPQAQVLAHPSTGGFLTHC 365
Query: 185 GSNSILK 191
G NS L+
Sbjct: 366 GWNSTLE 372
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 98 IQWLDSQPVDFVLNISLGSF-LSVSSAQMDEILAGLQMSGVRFLRVARGDASRLNQTCGD 156
++WLD QP V+ + GS +S +Q+ EI GL+ SGVRFL + + +
Sbjct: 267 LKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLE 326
Query: 157 ----TGQILPWSWCDQLRISCHSSAGGFLTHRGSNSILKIFMXXXXXXXXXXXXDQHPNS 212
G+ + W Q+ + H + GGF++H G NSIL+ +Q N+
Sbjct: 327 WMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNA 386
Query: 213 NQIVGNWKIG 222
++V W +G
Sbjct: 387 FRLVKEWGVG 396
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 98 IQWLDSQPVDFVLNISLGSF-LSVSSAQMDEILAGLQMSGVRFLRVARGDASRLNQTCGD 156
++WLD QP V+ + GS +S +Q+ EI GL+ SGVRFL + + +
Sbjct: 267 LKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLE 326
Query: 157 ----TGQILPWSWCDQLRISCHSSAGGFLTHRGSNSILKIFMXXXXXXXXXXXXDQHPNS 212
G+ + W Q+ + H + GGF++H G NSIL+ +Q N+
Sbjct: 327 WMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNA 386
Query: 213 NQIVGNWKIG 222
++V W +G
Sbjct: 387 FRLVKEWGVG 396
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 94 DPDDIQWLDSQPVDFVLNISLGSFLSVSSAQMDEILAGLQMSGVRFLRVARGD------- 146
D + + WL+S+ V+ ++ GS ++ Q+ E GL FL + R D
Sbjct: 282 DTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSV 341
Query: 147 --ASRLNQTCGDTGQILPWSWCDQLRISCHSSAGGFLTHRGSNSILKIFMXXXXXXXXXX 204
+S D G I SWC Q ++ H S GGFLTH G NS +
Sbjct: 342 IFSSEFTNEIADRGLIA--SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPF 399
Query: 205 XXDQHPNSNQIVGNWKIGKRMKKEI 229
DQ + I W+IG + +
Sbjct: 400 FADQPTDCRFICNEWEIGMEIDTNV 424
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 1 MPYPGRGHINSMMNLCNLIASKGPYI 26
+PYP +GHIN + L L+ +G +I
Sbjct: 14 IPYPVQGHINPLFKLAKLLHLRGFHI 39
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 39 SRFYEAVITKVVVPFEQLLNQ--LEPP-----------VTYILANVELSWRIRIELGCNS 85
S E VI + VPF +L++ LE P + L EL+ + ++ L
Sbjct: 188 SDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLNVGP 247
Query: 86 QEKTNSDNDPDD----IQWLDSQPVDFVLNISLGSFLSVSSAQMDEILAGLQMSGVRFLR 141
T D ++WLD V+ IS GS ++ ++ + L+ G F+
Sbjct: 248 FNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIW 307
Query: 142 VARGDASR-----LNQTCGDTGQILPWSWCDQLRISCHSSAGGFLTHRGSNSILK 191
RGD + G+I+ +W Q+ I HSS G FLTH G NS+L+
Sbjct: 308 SFRGDPKEKLPKGFLERTKTKGKIV--AWAPQVEILKHSSVGVFLTHSGWNSVLE 360
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 98 IQWLDSQPVDFVLNISLGSFLSVSSAQMDEILAGLQMSGVRFLRVARGDASRLNQTCG-- 155
+QWL + V+ IS G+ + A++ + L+ S V F+ R D +R++ G
Sbjct: 262 LQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR-DKARVHLPEGFL 320
Query: 156 ----DTGQILPWSWCDQLRISCHSSAGGFLTHRGSNSILKIFMXXXXXXXXXXXXDQHPN 211
G ++PW+ Q + H + G F+TH G NS+ + DQ N
Sbjct: 321 EKTRGYGMVVPWA--PQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN 378
Query: 212 SNQIVGNWKIGKRMKKEIGT 231
+ +IG R++ + T
Sbjct: 379 GRMVEDVLEIGVRIEGGVFT 398
>pdb|1DOS|A Chain A, Structure Of Fructose-Bisphosphate Aldolase
pdb|1DOS|B Chain B, Structure Of Fructose-Bisphosphate Aldolase
Length = 358
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 54 EQLLNQLEPPVTYILANVELSWRIRIELGCNSQEKTNSDNDPDDIQWLDSQPVD 107
E L +E Y+ ++ + IELGC E+ DN D L +QP D
Sbjct: 148 ESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPED 201
>pdb|1B57|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
With Phosphoglycolohydroxamate
pdb|1B57|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
With Phosphoglycolohydroxamate
pdb|1GYN|A Chain A, Class Ii Fructose 1,6-Bisphosphate Aldolase With Cadmium
(Not Zinc) In The Active Site
pdb|1ZEN|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase
Length = 358
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 54 EQLLNQLEPPVTYILANVELSWRIRIELGCNSQEKTNSDNDPDDIQWLDSQPVD 107
E L +E Y+ ++ + IELGC E+ DN D L +QP D
Sbjct: 148 ESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPED 201
>pdb|3CIH|A Chain A, Crystal Structure Of A Putative Alpha-Rhamnosidase From
Bacteroides Thetaiotaomicron
Length = 739
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 33 DRGSEFSRFYEAVITKVVVPFEQLLNQLEPPVTYILA----NVELSWRIR 78
+RG+ F F++ VVV F ++LN EP +I A NV+L +++
Sbjct: 41 ERGAFFPPFWKTDSHYVVVEFSKVLNLSEPEEVFIAAEGTYNVKLDGKLQ 90
>pdb|3QM3|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|C Chain C, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|D Chain D, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|E Chain E, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|F Chain F, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|G Chain G, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|H Chain H, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
Length = 357
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%)
Query: 54 EQLLNQLEPPVTYILANVELSWRIRIELGCNSQEKTNSDNDPDDIQWLDSQPVDFVL 110
E L L Y+ L + IELGC E+ DN D L +QP D L
Sbjct: 146 ESLEENLSTCEVYLQKLDALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVAL 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,398,319
Number of Sequences: 62578
Number of extensions: 226064
Number of successful extensions: 402
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 14
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)