Query 047145
Match_columns 383
No_of_seqs 203 out of 1134
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:07:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4293 Predicted membrane pro 100.0 7.4E-40 1.6E-44 326.6 5.2 350 9-360 20-380 (403)
2 cd08760 Cyt_b561_FRRS1_like Eu 100.0 1.8E-31 3.9E-36 241.7 15.4 179 167-348 3-190 (191)
3 smart00665 B561 Cytochrome b-5 99.9 2.8E-25 6.1E-30 188.7 8.4 124 195-320 1-129 (129)
4 PF03188 Cytochrom_B561: Eukar 99.9 1.9E-22 4.1E-27 172.9 9.9 126 195-321 1-131 (137)
5 cd08554 Cyt_b561 Eukaryotic cy 99.9 3.2E-22 7E-27 170.3 8.1 125 193-320 2-131 (131)
6 smart00664 DoH Possible catech 99.9 4.9E-20 1.1E-24 159.9 18.2 136 34-176 2-146 (148)
7 cd08766 Cyt_b561_ACYB-1_like P 99.8 7.5E-21 1.6E-25 163.1 8.1 131 189-322 4-138 (144)
8 cd08761 Cyt_b561_CYB561D2_like 99.8 1.9E-20 4.2E-25 168.4 9.3 132 190-322 18-157 (183)
9 PLN02351 cytochromes b561 fami 99.8 3.9E-20 8.5E-25 169.1 11.2 155 191-350 48-220 (242)
10 cd08764 Cyt_b561_CG1275_like N 99.8 5.4E-20 1.2E-24 167.2 9.6 158 190-349 21-194 (214)
11 cd08762 Cyt_b561_CYBASC3 Verte 99.8 1.2E-19 2.7E-24 159.4 8.2 132 191-322 33-168 (179)
12 PLN02810 carbon-monoxide oxyge 99.8 4.7E-19 1E-23 160.8 10.8 157 190-349 44-215 (231)
13 cd08765 Cyt_b561_CYBRD1 Verteb 99.8 2.4E-19 5.1E-24 154.7 7.9 132 191-322 10-145 (153)
14 PLN02680 carbon-monoxide oxyge 99.8 5.6E-19 1.2E-23 161.5 10.6 159 189-350 43-217 (232)
15 PF03351 DOMON: DOMON domain; 99.8 1.2E-17 2.5E-22 140.3 15.6 111 33-148 2-124 (124)
16 cd08763 Cyt_b561_CYB561 Verteb 99.8 1.3E-18 2.8E-23 149.1 8.3 130 191-322 5-138 (143)
17 KOG1619 Cytochrome b [Energy p 99.7 8.1E-19 1.8E-23 158.7 4.3 132 190-323 52-187 (245)
18 PF04526 DUF568: Protein of un 99.5 1.3E-13 2.8E-18 110.9 10.7 99 75-173 1-101 (101)
19 PF10348 DUF2427: Domain of un 99.3 3.2E-12 7E-17 104.1 8.4 88 188-285 13-101 (105)
20 cd00241 CDH_cytochrome Cellobi 99.3 2.5E-11 5.4E-16 108.3 14.6 134 33-176 21-174 (184)
21 KOG3568 Dopamine beta-monooxyg 99.0 7.9E-10 1.7E-14 108.7 10.0 133 22-161 30-173 (603)
22 PF13301 DUF4079: Protein of u 96.5 0.013 2.8E-07 52.2 8.5 58 261-322 113-171 (175)
23 cd08764 Cyt_b561_CG1275_like N 96.2 0.06 1.3E-06 49.5 11.3 97 226-322 21-118 (214)
24 smart00665 B561 Cytochrome b-5 96.2 0.04 8.7E-07 46.4 9.5 93 231-326 1-96 (129)
25 cd08554 Cyt_b561 Eukaryotic cy 96.2 0.04 8.6E-07 46.5 9.2 93 229-323 2-95 (131)
26 cd08766 Cyt_b561_ACYB-1_like P 96.1 0.067 1.4E-06 46.2 10.2 94 226-321 5-98 (144)
27 cd08760 Cyt_b561_FRRS1_like Eu 96.1 0.034 7.5E-07 50.1 8.9 96 226-325 33-129 (191)
28 PF03188 Cytochrom_B561: Eukar 96.0 0.023 5.1E-07 48.1 6.8 95 188-284 30-130 (137)
29 cd08763 Cyt_b561_CYB561 Verteb 95.9 0.057 1.2E-06 46.6 8.8 94 228-323 6-100 (143)
30 cd08761 Cyt_b561_CYB561D2_like 95.7 0.039 8.5E-07 49.5 7.4 96 225-322 17-116 (183)
31 cd08762 Cyt_b561_CYBASC3 Verte 95.6 0.45 9.8E-06 42.4 13.5 97 225-323 31-130 (179)
32 PLN02680 carbon-monoxide oxyge 95.3 0.48 1E-05 44.0 13.3 94 228-323 46-139 (232)
33 PLN02810 carbon-monoxide oxyge 94.2 1.9 4.1E-05 40.0 14.1 94 226-321 44-137 (231)
34 cd08765 Cyt_b561_CYBRD1 Verteb 93.4 0.86 1.9E-05 39.7 9.8 96 226-323 9-107 (153)
35 PLN02351 cytochromes b561 fami 93.2 0.9 1.9E-05 42.4 10.1 94 227-323 49-142 (242)
36 KOG1619 Cytochrome b [Energy p 93.1 0.69 1.5E-05 42.9 9.1 94 227-323 53-148 (245)
37 PF00033 Cytochrom_B_N: Cytoch 91.6 0.35 7.6E-06 42.7 5.3 92 231-322 11-127 (188)
38 COG2717 Predicted membrane pro 89.5 2.4 5.1E-05 38.8 8.7 113 199-319 49-167 (209)
39 PF10348 DUF2427: Domain of un 89.5 1.1 2.4E-05 36.5 6.0 88 224-321 13-101 (105)
40 PF10067 DUF2306: Predicted me 88.9 1.2 2.5E-05 36.1 5.7 32 294-325 2-33 (103)
41 PF08507 COPI_assoc: COPI asso 84.9 5 0.00011 34.1 7.7 28 293-320 57-84 (136)
42 PF13172 PepSY_TM_1: PepSY-ass 84.7 0.68 1.5E-05 29.5 1.8 30 294-323 2-31 (34)
43 PF00033 Cytochrom_B_N: Cytoch 84.3 2.2 4.7E-05 37.5 5.5 129 192-321 8-173 (188)
44 COG5658 Predicted integral mem 84.1 3.8 8.2E-05 37.3 6.9 44 292-335 40-83 (204)
45 PF13301 DUF4079: Protein of u 83.8 9.4 0.0002 34.0 9.2 68 262-331 80-148 (175)
46 PF10951 DUF2776: Protein of u 83.4 3.6 7.8E-05 39.3 6.6 82 235-323 157-244 (347)
47 PF15099 PIRT: Phosphoinositid 82.6 0.98 2.1E-05 37.7 2.3 69 297-366 46-116 (129)
48 TIGR01583 formate-DH-gamm form 79.7 16 0.00036 33.1 9.6 29 295-323 102-130 (204)
49 PF13630 SdpI: SdpI/YhfL prote 77.3 1.9 4E-05 32.4 2.2 34 292-325 18-51 (76)
50 PF13706 PepSY_TM_3: PepSY-ass 75.9 2.2 4.8E-05 27.7 2.0 29 294-322 1-29 (37)
51 PF01292 Ni_hydr_CYTB: Prokary 75.3 34 0.00074 29.7 10.2 91 231-323 9-123 (182)
52 TIGR02125 CytB-hydogenase Ni/F 75.3 15 0.00033 33.1 8.1 28 297-324 112-139 (211)
53 PF10856 DUF2678: Protein of u 74.9 9.4 0.0002 31.5 5.7 53 263-321 29-81 (118)
54 PF01794 Ferric_reduct: Ferric 73.7 7.1 0.00015 31.7 5.0 48 268-317 1-53 (125)
55 PRK12405 electron transport co 73.5 36 0.00079 31.7 10.0 70 194-274 35-104 (231)
56 PF01292 Ni_hydr_CYTB: Prokary 72.4 18 0.00039 31.5 7.7 125 192-318 6-164 (182)
57 PF15330 SIT: SHP2-interacting 71.0 6.6 0.00014 32.1 4.0 29 334-362 4-32 (107)
58 TIGR00910 2A0307_GadC glutamat 69.3 30 0.00065 36.0 9.6 12 347-358 452-463 (507)
59 PRK11513 cytochrome b561; Prov 68.7 9.4 0.0002 33.9 4.9 25 262-286 42-66 (176)
60 PRK05771 V-type ATP synthase s 68.4 22 0.00048 38.3 8.6 21 300-320 478-498 (646)
61 PF11044 TMEMspv1-c74-12: Plec 68.3 6.1 0.00013 26.7 2.7 29 332-360 8-36 (49)
62 PHA02898 virion envelope prote 65.2 34 0.00073 26.8 6.6 59 302-362 15-78 (92)
63 COG3038 CybB Cytochrome B561 [ 64.8 27 0.00058 31.3 7.0 26 261-286 46-71 (181)
64 TIGR02230 ATPase_gene1 F0F1-AT 63.3 27 0.00058 28.2 6.0 53 190-252 36-90 (100)
65 PF13703 PepSY_TM_2: PepSY-ass 61.0 16 0.00034 28.4 4.3 30 292-322 56-85 (88)
66 PRK10179 formate dehydrogenase 60.9 43 0.00093 30.8 7.9 29 295-323 107-135 (217)
67 COG4244 Predicted membrane pro 60.4 20 0.00043 31.4 5.2 25 227-251 46-70 (160)
68 PRK10639 formate dehydrogenase 59.7 73 0.0016 29.0 9.2 29 295-323 105-133 (211)
69 PRK05419 putative sulfite oxid 58.6 77 0.0017 28.9 9.0 24 296-320 145-168 (205)
70 PF10361 DUF2434: Protein of u 57.3 55 0.0012 31.4 7.9 99 262-360 43-154 (296)
71 TIGR00353 nrfE c-type cytochro 57.2 1.5E+02 0.0032 31.6 12.0 62 190-252 114-175 (576)
72 PF05767 Pox_A14: Poxvirus vir 54.8 95 0.0021 24.5 7.5 55 302-358 15-74 (92)
73 PF04238 DUF420: Protein of un 54.2 1.4E+02 0.0029 25.4 9.6 45 194-248 6-50 (133)
74 KOG1608 Protein transporter of 53.7 29 0.00062 33.5 5.4 59 267-325 217-281 (374)
75 COG3247 HdeD Uncharacterized c 53.1 1.7E+02 0.0038 26.3 12.0 72 237-326 80-152 (185)
76 COG2717 Predicted membrane pro 50.8 16 0.00035 33.4 3.2 42 191-234 111-152 (209)
77 PF13789 DUF4181: Domain of un 49.2 54 0.0012 26.7 5.8 32 295-326 25-56 (110)
78 COG4329 Predicted membrane pro 48.1 35 0.00077 28.8 4.5 45 236-281 65-109 (160)
79 COG4858 Uncharacterized membra 47.6 2.2E+02 0.0047 25.8 9.6 74 224-307 91-172 (226)
80 KOG4293 Predicted membrane pro 47.0 10 0.00022 38.4 1.5 111 191-303 279-395 (403)
81 PF05393 Hum_adeno_E3A: Human 46.0 23 0.0005 27.7 2.9 18 347-364 46-63 (94)
82 PRK09292 Na(+)-translocating N 45.7 1.6E+02 0.0034 27.1 8.8 110 194-316 38-151 (209)
83 COG4097 Predicted ferric reduc 43.4 2.5E+02 0.0055 28.3 10.3 22 261-282 75-96 (438)
84 TIGR03813 put_Glu_GABA_T putat 43.0 1.2E+02 0.0025 31.1 8.6 26 293-318 390-415 (474)
85 PF11014 DUF2852: Protein of u 42.6 30 0.00065 28.6 3.2 22 196-217 11-32 (115)
86 PF10856 DUF2678: Protein of u 42.1 84 0.0018 26.0 5.7 51 230-283 29-79 (118)
87 TIGR01191 ccmC heme exporter p 42.0 2E+02 0.0044 25.8 8.8 64 188-254 8-71 (184)
88 TIGR00383 corA magnesium Mg(2+ 41.9 67 0.0015 30.9 6.3 42 303-344 263-305 (318)
89 PF03929 PepSY_TM: PepSY-assoc 41.2 32 0.00069 20.8 2.4 23 298-320 2-24 (27)
90 PRK10369 heme lyase subunit Nr 40.8 4.8E+02 0.01 27.8 12.8 61 190-252 168-229 (571)
91 PF10320 7TM_GPCR_Srsx: Serpen 40.1 1.2E+02 0.0026 28.4 7.5 42 282-325 88-129 (257)
92 PF05297 Herpes_LMP1: Herpesvi 38.3 8.4 0.00018 36.8 -0.6 18 266-283 105-122 (381)
93 COG3125 CyoD Heme/copper-type 37.9 2.3E+02 0.005 23.3 7.8 75 231-315 19-96 (111)
94 PF06024 DUF912: Nucleopolyhed 37.8 24 0.00053 28.4 2.1 31 330-360 62-92 (101)
95 TIGR01939 nqrD NADH:ubiquinone 37.3 2.4E+02 0.0053 25.8 8.6 109 196-316 39-150 (207)
96 PRK10263 DNA translocase FtsK; 37.1 2.9E+02 0.0063 32.5 10.9 36 194-229 17-52 (1355)
97 PRK03735 cytochrome b6; Provis 36.8 1.4E+02 0.003 27.7 7.1 110 192-326 40-150 (223)
98 TIGR03145 cyt_nit_nrfE cytochr 36.6 3E+02 0.0064 29.7 10.5 61 190-252 166-227 (628)
99 PTZ00127 cytochrome c oxidase 36.3 2E+02 0.0044 29.1 8.9 61 263-324 219-279 (403)
100 CHL00070 petB cytochrome b6 35.9 3.4E+02 0.0073 25.0 9.5 110 191-326 31-142 (215)
101 PRK09546 zntB zinc transporter 35.7 96 0.0021 30.1 6.3 38 302-339 268-306 (324)
102 PF10129 OpgC_C: OpgC protein; 35.6 3.4E+02 0.0073 27.0 10.2 54 194-251 186-239 (358)
103 COG3038 CybB Cytochrome B561 [ 35.5 1.7E+02 0.0037 26.2 7.3 86 270-356 17-111 (181)
104 COG0598 CorA Mg2+ and Co2+ tra 35.0 74 0.0016 31.0 5.3 42 303-344 267-309 (322)
105 PF01654 Bac_Ubq_Cox: Bacteria 34.9 2.9E+02 0.0063 28.3 9.8 20 297-316 116-135 (436)
106 PRK15097 cytochrome d terminal 34.8 5.3E+02 0.012 27.1 11.6 156 194-358 17-211 (522)
107 PF14927 Neurensin: Neurensin 33.9 2.2E+02 0.0047 24.5 7.3 24 300-323 46-69 (140)
108 PF05545 FixQ: Cbb3-type cytoc 33.8 66 0.0014 22.0 3.5 14 345-358 21-34 (49)
109 KOG1278 Endosomal membrane pro 33.8 6E+02 0.013 27.1 11.6 34 197-232 362-399 (628)
110 PF06679 DUF1180: Protein of u 33.5 50 0.0011 29.1 3.5 19 347-366 112-130 (163)
111 PF10242 L_HGMIC_fpl: Lipoma H 33.4 1.1E+02 0.0024 27.1 5.9 58 192-249 69-126 (181)
112 PF02628 COX15-CtaA: Cytochrom 33.0 1E+02 0.0022 29.7 5.9 87 230-322 69-155 (302)
113 TIGR02901 QoxD cytochrome aa3 32.9 2.4E+02 0.0052 22.4 7.0 70 231-310 8-80 (94)
114 PF01578 Cytochrom_C_asm: Cyto 32.8 1.3E+02 0.0027 27.2 6.3 127 189-321 68-214 (214)
115 PF06011 TRP: Transient recept 32.7 2.4E+02 0.0051 28.7 8.8 30 285-318 344-373 (438)
116 PF06609 TRI12: Fungal trichot 32.6 5.8E+02 0.013 27.4 11.9 31 302-332 240-271 (599)
117 PF11755 DUF3311: Protein of u 32.2 1.4E+02 0.0031 21.9 5.2 15 312-326 7-21 (66)
118 TIGR02908 CoxD_Bacillus cytoch 31.2 3E+02 0.0064 22.6 7.9 44 230-281 26-69 (110)
119 PF10002 DUF2243: Predicted me 31.2 2.8E+02 0.0061 23.9 7.5 49 235-284 51-99 (143)
120 COG2149 Predicted membrane pro 30.7 1.4E+02 0.0031 24.7 5.4 17 304-320 59-75 (120)
121 PHA03048 IMV membrane protein; 30.5 2.7E+02 0.0059 21.9 7.1 57 302-360 15-75 (93)
122 PF14800 DUF4481: Domain of un 30.2 1.1E+02 0.0025 29.5 5.4 34 298-331 63-96 (308)
123 PHA02680 ORF090 IMV phosphoryl 30.0 2.7E+02 0.0059 21.8 6.5 54 302-358 15-74 (91)
124 PRK15035 cytochrome bd-II oxid 29.7 5.4E+02 0.012 27.1 10.7 57 194-253 17-73 (514)
125 PRK15049 L-asparagine permease 29.4 3.2E+02 0.007 28.2 9.3 22 294-315 415-436 (499)
126 cd01663 Cyt_c_Oxidase_I Cytoch 29.4 5E+02 0.011 27.0 10.6 57 189-249 45-109 (488)
127 PRK10171 hydrogenase 1 b-type 29.3 4.6E+02 0.0099 24.2 12.4 61 191-252 17-83 (235)
128 PLN02631 ferric-chelate reduct 29.0 1.1E+02 0.0023 33.5 5.7 89 268-356 156-257 (699)
129 PRK03557 zinc transporter ZitB 28.7 2.7E+02 0.0058 27.0 8.1 11 264-274 52-62 (312)
130 PF02439 Adeno_E3_CR2: Adenovi 28.7 1.1E+02 0.0024 20.1 3.5 10 351-360 24-33 (38)
131 TIGR01478 STEVOR variant surfa 28.4 66 0.0014 30.9 3.5 15 236-250 180-194 (295)
132 TIGR00930 2a30 K-Cl cotranspor 28.4 2.3E+02 0.0051 32.2 8.5 27 292-318 490-516 (953)
133 COG1380 Putative effector of m 28.3 1.8E+02 0.004 24.5 5.9 14 264-277 33-46 (128)
134 PF05297 Herpes_LMP1: Herpesvi 28.0 20 0.00043 34.4 0.0 17 191-207 17-33 (381)
135 PTZ00370 STEVOR; Provisional 27.6 69 0.0015 30.8 3.5 11 349-359 274-284 (296)
136 PRK03735 cytochrome b6; Provis 27.4 1.3E+02 0.0028 27.9 5.3 58 266-323 42-116 (223)
137 KOG4671 Brain cell membrane pr 27.2 88 0.0019 28.0 3.9 50 238-289 89-138 (201)
138 CHL00070 petB cytochrome b6 27.0 1.4E+02 0.003 27.5 5.4 57 267-323 35-108 (215)
139 PF05568 ASFV_J13L: African sw 27.0 85 0.0018 27.0 3.6 28 332-359 31-58 (189)
140 PRK10209 acid-resistance membr 26.9 2.8E+02 0.0061 24.7 7.3 21 303-323 110-130 (190)
141 PRK12585 putative monovalent c 26.9 1.3E+02 0.0027 27.3 4.8 45 198-249 11-57 (197)
142 PF02656 DUF202: Domain of unk 26.7 1.8E+02 0.0039 21.3 5.1 24 294-317 8-31 (73)
143 PF04277 OAD_gamma: Oxaloaceta 26.6 1.5E+02 0.0033 22.1 4.8 22 332-353 11-32 (79)
144 PF14007 YtpI: YtpI-like prote 26.3 1.3E+02 0.0029 23.7 4.4 41 268-321 39-79 (89)
145 PRK05419 putative sulfite oxid 25.3 69 0.0015 29.3 3.0 18 200-217 120-137 (205)
146 PF11862 DUF3382: Domain of un 24.9 2.1E+02 0.0046 22.8 5.5 75 240-314 14-100 (101)
147 PRK13673 hypothetical protein; 24.9 4.1E+02 0.0088 22.1 7.8 24 230-253 32-55 (118)
148 PRK11513 cytochrome b561; Prov 24.4 2.2E+02 0.0048 25.1 6.1 59 227-285 40-103 (176)
149 TIGR02125 CytB-hydogenase Ni/F 24.1 1.4E+02 0.0031 26.7 5.0 22 193-215 8-29 (211)
150 PF15345 TMEM51: Transmembrane 24.0 99 0.0021 28.8 3.8 17 302-318 10-26 (233)
151 PF12650 DUF3784: Domain of un 23.8 2.3E+02 0.0049 22.2 5.5 26 298-323 40-65 (97)
152 PF05915 DUF872: Eukaryotic pr 23.8 1.9E+02 0.0041 23.9 5.1 22 302-323 44-65 (115)
153 COG3949 Uncharacterized membra 23.7 2.1E+02 0.0045 28.4 6.1 58 262-321 252-313 (349)
154 KOG0204 Calcium transporting A 23.6 6.7 0.00014 42.9 -4.4 67 293-360 146-212 (1034)
155 PF04156 IncA: IncA protein; 23.5 1.6E+02 0.0034 26.1 5.0 21 300-320 3-23 (191)
156 TIGR00914 2A0601 heavy metal e 23.2 8.9E+02 0.019 27.8 12.1 42 234-279 906-947 (1051)
157 PF03729 DUF308: Short repeat 23.2 81 0.0018 22.6 2.6 20 302-321 26-45 (72)
158 PF06667 PspB: Phage shock pro 23.2 1.6E+02 0.0034 22.5 4.1 16 345-360 16-31 (75)
159 PF14358 DUF4405: Domain of un 22.5 1.2E+02 0.0027 21.7 3.4 18 199-216 8-25 (64)
160 PF03595 SLAC1: Voltage-depend 22.3 1.9E+02 0.0041 27.9 5.7 36 236-275 6-41 (330)
161 PF02628 COX15-CtaA: Cytochrom 22.3 6.9E+02 0.015 23.8 13.5 61 262-324 131-191 (302)
162 TIGR00913 2A0310 amino acid pe 22.0 2.8E+02 0.006 28.3 7.2 21 294-314 403-423 (478)
163 TIGR00908 2A0305 ethanolamine 21.9 2.6E+02 0.0056 28.2 6.8 13 301-313 386-398 (442)
164 PF11381 DUF3185: Protein of u 21.2 72 0.0016 23.1 1.8 24 302-325 1-24 (59)
165 MTH00213 ND6 NADH dehydrogenas 20.8 1.6E+02 0.0034 27.1 4.3 49 297-345 21-69 (239)
166 PF05084 GRA6: Granule antigen 20.8 2.5E+02 0.0054 24.7 5.3 10 350-359 166-175 (215)
167 PF03006 HlyIII: Haemolysin-II 20.6 2.3E+02 0.0049 25.4 5.6 10 268-277 82-91 (222)
168 KOG2082 K+/Cl- cotransporter K 20.5 3.5E+02 0.0076 30.0 7.4 22 290-311 596-617 (1075)
169 cd00284 Cytochrome_b_N Cytochr 20.4 5.1E+02 0.011 23.4 7.7 111 192-327 21-132 (200)
170 COG4244 Predicted membrane pro 20.3 3.9E+02 0.0085 23.4 6.5 33 294-326 83-115 (160)
171 COG1971 Predicted membrane pro 20.2 4.3E+02 0.0093 23.9 6.9 49 238-290 46-94 (190)
172 cd00284 Cytochrome_b_N Cytochr 20.2 2.1E+02 0.0046 25.9 5.2 56 267-322 24-96 (200)
173 PF02508 Rnf-Nqr: Rnf-Nqr subu 20.2 6.4E+02 0.014 22.6 9.9 115 196-318 37-154 (190)
174 PF15176 LRR19-TM: Leucine-ric 20.1 3.6E+02 0.0078 21.8 5.7 21 326-346 14-34 (102)
175 PF12794 MscS_TM: Mechanosensi 20.1 2.4E+02 0.0052 27.8 5.9 59 264-322 154-221 (340)
176 PF14654 Epiglycanin_C: Mucin, 20.0 2.8E+02 0.006 22.3 5.0 48 327-378 16-63 (106)
No 1
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-40 Score=326.58 Aligned_cols=350 Identities=44% Similarity=0.820 Sum_probs=288.1
Q ss_pred ccccCCCCccccCcccccccccCCCCceEEEEEEeCCCCeEEEEEEEecCCCCCeEEEEEcCCCCCCCCCcEEEEEEcC-
Q 047145 9 SYAQTCSKYSFSSNRVFKSCNDLPVLNAYIHYNYDSSSGKLEIGYRQTRVSSAQWVSWAVNPTEQGMVGSQALVAYRQP- 87 (383)
Q Consensus 9 ~~~~~C~~~~~~~~~~y~~c~~l~~~~~~l~W~~~~~~~~i~i~~~~~~~~~~GWVA~Gfs~~g~~M~gad~vI~~~~~- 87 (383)
++.+.|.+++++.++.|+.|.++|+++..++++++.+++.+++.|.... ...|++++++|++.+|.++.+++++.+.
T Consensus 20 ~~~~~C~~~~~~~~~~~~~c~~lp~~~~~i~~~~~~~~~~~~i~~~~~~--~~~w~~~~~~p~~t~m~~~~~~va~~~~~ 97 (403)
T KOG4293|consen 20 SQTDTCSSQTFNIDKSFDSCVDLPTLNSFIHYTYNSANGVLSIAFSAPL--SSAWVAWAINPTGTGMVGSRALVAYAGSS 97 (403)
T ss_pred hhhcceeeeeccCCccccccccCCCCCceEEEEEecCCCeEEEEEecCC--cccccccccCCccccccccceeeeeeccc
Confidence 3334799999999999999999999999999999988999999998854 4459999999999779999999999975
Q ss_pred CCcEEEEEeecccccccccCCCceeeeccccEEEeCCE---EEEEEEeccC-CCCcceeEEEeeCCCC--CCCCCCCCCC
Q 047145 88 DGKIRAYTSPITQYQTTLAEGNLAFDVSDLTATYANNE---MIIFATLGLQ-NGTTTLHQVWQQGPLS--GNVPAIHSTT 161 (383)
Q Consensus 88 ~G~v~v~~~~~~g~~~p~~~~~~~~~l~~~s~~~~~g~---~~~~~~~~l~-~~~~~~~~IwA~G~~~--~~~l~~H~~~ 161 (383)
+|...+..++..++.+-.......+++.+....++... ..+|++.+++ .+...++.+|+.|+.. +..+.+|...
T Consensus 98 ~g~~~~~t~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~l~~~~~~~~~~~w~~~~~~~~g~~~~~h~~~ 177 (403)
T KOG4293|consen 98 SGATTVKTYVILGYSPSLVPALLSFTLGNVRAECNLRSSSPIGIFASFKLAGANGGKYSAVWQVGPTGSGGGRPKRHKLS 177 (403)
T ss_pred cchhhceeeeecccchhhcccccceeeecCcchhhccCCCCceEEEEEEeecCCCceeEEEEEccCCccCCCCCccCccc
Confidence 67778888888887542222223344444443333222 6778887777 4567889999999875 6788999998
Q ss_pred CCCCccceeeeecc--CCccccCCC-CCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHH
Q 047145 162 GPNVQSMGTLNLFS--GQTATSSGG-AANSKLRKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLS 238 (383)
Q Consensus 162 ~~n~~~~~~ldl~~--g~~~~~~~~-~~~~~~~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~ 238 (383)
+.+......+|+.. |.......+ .......+...||++|.++|++++|+|++.+||+|..+...+.||++|+.+|..
T Consensus 178 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~ 257 (403)
T KOG4293|consen 178 GSNLASVTSLDLTSDIGELSITSEGNFNSSGLKLRMTHGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFT 257 (403)
T ss_pred cCCccceeecccccccccccccccCcccCcchhccccHHHHhhhhhheeccccceeEEEecccCCCCcchhhhhhhheee
Confidence 77665666667765 222211100 112334566679999999999999999999999999876789999999999999
Q ss_pred HHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHH
Q 047145 239 AYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYR 318 (383)
Q Consensus 239 ~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~ 318 (383)
++++.+.|++.+....+++.+..+..|..+|+.++++.++|++..++||.++++.|++||++|+..||..+++|++|++.
T Consensus 258 ~~~~~~~~~~~g~~~~~~s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~ 337 (403)
T KOG4293|consen 258 GFILGVAGFVDGLKLSNESDGTVYSAHTDLGIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFD 337 (403)
T ss_pred EEEEEeeeeeeeEEEccCCCceeeeecccchhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHhh
Confidence 99999999999988887776677789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccc-hhHHHHHHHHHHHHHHHHHHHhhHhhhccc
Q 047145 319 GFNILKPDNKWK-QAYTGCIIVLVCVAVVLEIFTWALVIKRKK 360 (383)
Q Consensus 319 Gl~~~~~~~~~~-~~~~~~~~~~~~~~v~lei~~w~~~~~~~~ 360 (383)
|+.+.++...|. +.|+.+.+++.++.+++|+..|+...+|.+
T Consensus 338 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 380 (403)
T KOG4293|consen 338 GLELLYPGQSWIKLGYGSILAVLGLIAVILEILSWRITIERPS 380 (403)
T ss_pred hHhhhcCCCceEEeeeeeEEEEechhhhhhhhheeeeeecccC
Confidence 999999998898 799999999999999999999887776665
No 2
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.97 E-value=1.8e-31 Score=241.69 Aligned_cols=179 Identities=39% Similarity=0.709 Sum_probs=151.8
Q ss_pred cceeeeeccCCccccCC-------CCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHH
Q 047145 167 SMGTLNLFSGQTATSSG-------GAANSKLRKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSA 239 (383)
Q Consensus 167 ~~~~ldl~~g~~~~~~~-------~~~~~~~~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~ 239 (383)
++.++|+++|++++... +.....+..+++||++|++||++++|+|++++||++. +++.||++|+.+|+++
T Consensus 3 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~---~~~~~~~~H~~~q~~~ 79 (191)
T cd08760 3 SSYSLDLASGTSSSGGSPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLL---GDPVWFYLHAGLQLLA 79 (191)
T ss_pred cceEEEeccceeccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCchhHHHHHHHHHHH
Confidence 45678888876652111 0112346789999999999999999999999999743 4689999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHc
Q 047145 240 YIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRG 319 (383)
Q Consensus 240 ~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G 319 (383)
++++++|+++++..........++.|+++|+++++++++|++.+++||.+..+.|++|+++|+++|++++++|++|+++|
T Consensus 80 ~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G 159 (191)
T cd08760 80 VLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLG 159 (191)
T ss_pred HHHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887511122347899999999999999999999999999888899999999999999999999999999
Q ss_pred ccccCCC--cccchhHHHHHHHHHHHHHHHH
Q 047145 320 FNILKPD--NKWKQAYTGCIIVLVCVAVVLE 348 (383)
Q Consensus 320 l~~~~~~--~~~~~~~~~~~~~~~~~~v~le 348 (383)
+.+.+.+ +.+.++|.+++++..++.+++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (191)
T cd08760 160 LDLAGAGTPKAWKIAYGVVVAVLALVYLILE 190 (191)
T ss_pred HHHhcCCcccchhhHHHHHHHHHHHHHHHHc
Confidence 9999887 7888899999988888888776
No 3
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.92 E-value=2.8e-25 Score=188.70 Aligned_cols=124 Identities=38% Similarity=0.626 Sum_probs=110.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh-hhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCC-CccccccchhhHHH
Q 047145 195 IHGVLNAVSWGLLMPIGVIIARY-LKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESV-GVVLKTHRTLGIVI 272 (383)
Q Consensus 195 ~Hg~lm~~aw~~l~P~gil~aR~-~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~H~~lG~~~ 272 (383)
+||++|.+||++++|+|++++|+ .+.. +++.||++|+.+|+++++++++|+++++...++.+ ...+++|+++|+++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~--~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~ 78 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFL--SKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAA 78 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHH
Confidence 69999999999999999999997 3332 57899999999999999999999999988766532 22368999999999
Q ss_pred HHHHHHHhhhheeccCCC---CCcceeeeehhHHHHHHHHHHHHHHHHHcc
Q 047145 273 FCLGTLQAFALLLRPKPD---HKYRIYWNFYHHSVGYATIILSIINIYRGF 320 (383)
Q Consensus 273 ~~l~~~Q~l~~~~rp~~~---~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl 320 (383)
+++.++|++.|++||.++ .+.|..++++|+++|++++++|++|+++|+
T Consensus 79 ~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 79 FVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999998887765 677899999999999999999999999986
No 4
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.88 E-value=1.9e-22 Score=172.90 Aligned_cols=126 Identities=28% Similarity=0.489 Sum_probs=108.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccC--CCccccccchhhHHH
Q 047145 195 IHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSES--VGVVLKTHRTLGIVI 272 (383)
Q Consensus 195 ~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~~~~~~~H~~lG~~~ 272 (383)
+|+++|++||++++|.|++++|+.+..+.+++.|+++|..+|+++++++++|+++++...++. +++ +++|+++|+++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~-~s~H~~lG~~~ 79 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHF-KSWHSILGLAT 79 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC-CCchhhhhHHH
Confidence 699999999999999999999974421235788999999999999999999999998866542 344 68999999999
Q ss_pred HHHHHHHhhhheec---cCCCCCcceeeeehhHHHHHHHHHHHHHHHHHccc
Q 047145 273 FCLGTLQAFALLLR---PKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFN 321 (383)
Q Consensus 273 ~~l~~~Q~l~~~~r---p~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~ 321 (383)
++++++|++.|+++ |.++.+.|+.++++|+++|++++++|++|+.+|+.
T Consensus 80 ~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~ 131 (137)
T PF03188_consen 80 FVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLT 131 (137)
T ss_pred HHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877753 55566678889999999999999999999999995
No 5
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.86 E-value=3.2e-22 Score=170.31 Aligned_cols=125 Identities=23% Similarity=0.334 Sum_probs=109.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccC--CCccccccchhhH
Q 047145 193 RNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSES--VGVVLKTHRTLGI 270 (383)
Q Consensus 193 ~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~~~~~~~H~~lG~ 270 (383)
+++|+++|.+||++++|.|++++|++|.. .++.|+++|+.+|++++++.++|+++++...++. +++ ++.|+++|+
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~--~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~-~s~Hs~lGl 78 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLL--TKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANL-YSLHSWLGL 78 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhcccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccc-hhHHHHHHH
Confidence 57999999999999999999999998765 4678999999999999999999999998876432 233 689999999
Q ss_pred HHHHHHHHHhhhhee---ccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcc
Q 047145 271 VIFCLGTLQAFALLL---RPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGF 320 (383)
Q Consensus 271 ~~~~l~~~Q~l~~~~---rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl 320 (383)
+++++.++|++.|+. .|.+..+.|..++++|+++|+++++++++++++|+
T Consensus 79 ~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 79 ATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999987764 35554446889999999999999999999999985
No 6
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=99.85 E-value=4.9e-20 Score=159.92 Aligned_cols=136 Identities=20% Similarity=0.358 Sum_probs=109.2
Q ss_pred CceEEEEEEeCCCCeEEEEEEEecCCCCCeEEEEEcCCCCCCCCCcEEEEEEcCCCcEEEEEeecccccccccCCCceee
Q 047145 34 LNAYIHYNYDSSSGKLEIGYRQTRVSSAQWVSWAVNPTEQGMVGSQALVAYRQPDGKIRAYTSPITQYQTTLAEGNLAFD 113 (383)
Q Consensus 34 ~~~~l~W~~~~~~~~i~i~~~~~~~~~~GWVA~Gfs~~g~~M~gad~vI~~~~~~G~v~v~~~~~~g~~~p~~~~~~~~~ 113 (383)
+++.++|+++.+ ++++|+++++.. +.||+|||||+++. |.|+|+++|+.+++|++.+.|+|++|+..|..|...+..
T Consensus 2 ~~~~l~W~~~~~-~~v~~~l~~~~~-~~gwvaiGfs~~~~-M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~~d~~~~~~ 78 (148)
T smart00664 2 CDYFLSWSVDGE-NSIAFELSGPTS-TNGWVAIGFSPDGQ-MAGADVVVAWVDNNGRVTVKDYYTPGYGPPVEDDQQDVT 78 (148)
T ss_pred ceEEEEEEECCC-CeEEEEEEEecC-CCCEEEEEECCCCC-cCCCCEEEEEEcCCCCEEEEEEEcCCCCCCCcCcccccc
Confidence 468999999855 888888877642 38999999999865 999999999998779999999999999988766554432
Q ss_pred eccccEEEeCCEEEEEEEeccCCCC--------cceeEEEeeCCC-CCCCCCCCCCCCCCCccceeeeeccC
Q 047145 114 VSDLTATYANNEMIIFATLGLQNGT--------TTLHQVWQQGPL-SGNVPAIHSTTGPNVQSMGTLNLFSG 176 (383)
Q Consensus 114 l~~~s~~~~~g~~~~~~~~~l~~~~--------~~~~~IwA~G~~-~~~~l~~H~~~~~n~~~~~~ldl~~g 176 (383)
.. .++.+++|.++|+|+|++.+++ .+.+++||.|+. .++.+.+|... ..+..++++.+.
T Consensus 79 ~~-~~~~~~~g~~~~~f~R~l~t~d~~d~~~~~~~~~~i~a~G~~~~~~~~~~H~~~---~~~~~~i~~~~~ 146 (148)
T smart00664 79 DL-LSATYENGVLTCRFRRKLGSNDPDDKSLLDGTVHVLWAKGPLSPNGGLGYHDFS---LKSTKKVCLSSC 146 (148)
T ss_pred cc-eeEEEECCEEEEEEEEEccCCCccccccCCCeEEEEEEECCCCCCCCeeecccc---ccCceEEEeccC
Confidence 22 1567899999999999998865 367899999983 36779999875 246778888754
No 7
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.83 E-value=7.5e-21 Score=163.13 Aligned_cols=131 Identities=21% Similarity=0.187 Sum_probs=112.0
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCC-Cccccccch
Q 047145 189 KLRKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESV-GVVLKTHRT 267 (383)
Q Consensus 189 ~~~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~H~~ 267 (383)
...++++|++||.++|.++++.|+++.|..|. .++.|.++|+.+|.+++++.++|++.++...++.+ ...++.|+|
T Consensus 4 ~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~---~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSw 80 (144)
T cd08766 4 KGLIFNVHPVLMVIGFIFLAGEAILAYKTVPG---SREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSW 80 (144)
T ss_pred CcceeeccHHHHHHHHHHHHHHHHHHhhcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHH
Confidence 44789999999999999999999999886553 46677899999999999999999999888765432 124789999
Q ss_pred hhHHHHHHHHHHhhhhe---eccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccc
Q 047145 268 LGIVIFCLGTLQAFALL---LRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNI 322 (383)
Q Consensus 268 lG~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~ 322 (383)
+|++++++..+|.+.|+ +.|....+.|....++|+++|+++++++++++.+|+..
T Consensus 81 lGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~e 138 (144)
T cd08766 81 LGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLE 138 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987664 57876555678888899999999999999999999864
No 8
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.82 E-value=1.9e-20 Score=168.36 Aligned_cols=132 Identities=22% Similarity=0.205 Sum_probs=109.2
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcc-cCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccC--CCccccccc
Q 047145 190 LRKRNIHGVLNAVSWGLLMPIGVIIARYLKVFK-SAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSES--VGVVLKTHR 266 (383)
Q Consensus 190 ~~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~-~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~~~~~~~H~ 266 (383)
+.++++|+++|+++|++++|+|++..|-.+... .+++.|+++|+.+|.++++++++|+++++...++. +++ ++.|+
T Consensus 18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf-~s~H~ 96 (183)
T cd08761 18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHF-TSWHG 96 (183)
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc-cchhH
Confidence 467999999999999999999999755322110 24678899999999999999999999888765432 234 68999
Q ss_pred hhhHHHHHHHHHHhhhhee---ccCCCC--CcceeeeehhHHHHHHHHHHHHHHHHHcccc
Q 047145 267 TLGIVIFCLGTLQAFALLL---RPKPDH--KYRIYWNFYHHSVGYATIILSIINIYRGFNI 322 (383)
Q Consensus 267 ~lG~~~~~l~~~Q~l~~~~---rp~~~~--~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~ 322 (383)
++|++++++.++|++.|+. +|.... ++|+.++++|+++|++++++|++|+.+|+..
T Consensus 97 ~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 97 ILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999987763 443332 5788899999999999999999999999987
No 9
>PLN02351 cytochromes b561 family protein
Probab=99.82 E-value=3.9e-20 Score=169.15 Aligned_cols=155 Identities=18% Similarity=0.109 Sum_probs=122.4
Q ss_pred hhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCC--Cccccccch
Q 047145 191 RKR-NIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESV--GVVLKTHRT 267 (383)
Q Consensus 191 ~~~-~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~--~~~~~~H~~ 267 (383)
..+ ++|++||.++|+++++.||++.|.+|. .++.|+.+|..+|.++++++++|+.. ...++.+ ...++.|+|
T Consensus 48 ~iffn~HP~lMviGfi~L~geAILvYR~~~~---~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~~~i~nlySLHSW 122 (242)
T PLN02351 48 LVYAVLHPLLMVIGFILISGEAILVHRWLPG---SRKTKKSVHLWLQGLALASGVFGIWT--KFHGQDGIVANFYSLHSW 122 (242)
T ss_pred ceeecccHHHHHHHHHHHHHHHHHHhhcccc---cchHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCCccchhHHHHH
Confidence 355 799999999999999999999998764 35568999999999999999999998 3333221 124799999
Q ss_pred hhHHHHHHHHHHhhhhe---eccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHccccc------C------CCcccchh
Q 047145 268 LGIVIFCLGTLQAFALL---LRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNIL------K------PDNKWKQA 332 (383)
Q Consensus 268 lG~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~------~------~~~~~~~~ 332 (383)
+|++++++..+|.+.|+ +.|......|....++|.++|+.+++++++++.+|+... + ++++..+.
T Consensus 123 lGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN 202 (242)
T PLN02351 123 MGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVN 202 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHH
Confidence 99999999999987555 456666667888889999999999999999999999653 1 13445556
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047145 333 YTGCIIVLVCVAVVLEIF 350 (383)
Q Consensus 333 ~~~~~~~~~~~~v~lei~ 350 (383)
.++++.+++++.|++.+.
T Consensus 203 ~~Glliv~fG~~Vv~~~~ 220 (242)
T PLN02351 203 GLGLGLALLSGIVILAAV 220 (242)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 777777777666666543
No 10
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.81 E-value=5.4e-20 Score=167.19 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=125.0
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccC--C-Cccccccc
Q 047145 190 LRKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSES--V-GVVLKTHR 266 (383)
Q Consensus 190 ~~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~-~~~~~~H~ 266 (383)
...+++|+++|.+++.++++.|+++.|.+|.. .++.|+.+|..+|.++++++++|+..++...++. + ...++.|+
T Consensus 21 ~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~--~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHS 98 (214)
T cd08764 21 GLQFNWHPLLMVLGLIFLYGNSILVYRVFRNT--RKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHS 98 (214)
T ss_pred CceEeecHHHHHHHHHHHHHHHHHHhccCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHH
Confidence 35789999999999999999999999987753 3556778999999999999999998887765443 1 12379999
Q ss_pred hhhHHHHHHHHHHhhhhe---eccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHccccc--------C--CCcccchhH
Q 047145 267 TLGIVIFCLGTLQAFALL---LRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNIL--------K--PDNKWKQAY 333 (383)
Q Consensus 267 ~lG~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~--------~--~~~~~~~~~ 333 (383)
|+|++++++..+|.+.|+ +.|......|....++|+++|+++++++++++.+|+... + ++.+....+
T Consensus 99 wlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~~~e~~l~N~ 178 (214)
T cd08764 99 WLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNKYSNLPAEGVLGNF 178 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChhHHHHHH
Confidence 999999999999987664 567755556777777999999999999999999999662 1 133445566
Q ss_pred HHHHHHHHHHHHHHHH
Q 047145 334 TGCIIVLVCVAVVLEI 349 (383)
Q Consensus 334 ~~~~~~~~~~~v~lei 349 (383)
++++.++.++.|++.+
T Consensus 179 ~gl~~~~fg~~V~~~~ 194 (214)
T cd08764 179 IGIVLVIFGGLVVYLV 194 (214)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777666666665544
No 11
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.80 E-value=1.2e-19 Score=159.42 Aligned_cols=132 Identities=23% Similarity=0.220 Sum_probs=112.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCC-Cccccccchhh
Q 047145 191 RKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESV-GVVLKTHRTLG 269 (383)
Q Consensus 191 ~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~H~~lG 269 (383)
+.+++|+++|.++|++++..++++.|..+..+.++..|+++|..+|.++++++++|+..++..+++.+ ...++.|+|+|
T Consensus 33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlG 112 (179)
T cd08762 33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVG 112 (179)
T ss_pred CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHH
Confidence 37999999999999999999999988665543345668899999999999999999999998876542 12368999999
Q ss_pred HHHHHHHHHHhhhhe---eccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccc
Q 047145 270 IVIFCLGTLQAFALL---LRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNI 322 (383)
Q Consensus 270 ~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~ 322 (383)
++++++..+|.+.|+ +.|....+.|....++|+++|+.+++++++++.+|+..
T Consensus 113 l~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~e 168 (179)
T cd08762 113 ICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINE 168 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987655 45665656788889999999999999999999999975
No 12
>PLN02810 carbon-monoxide oxygenase
Probab=99.79 E-value=4.7e-19 Score=160.81 Aligned_cols=157 Identities=22% Similarity=0.175 Sum_probs=127.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCC-Cccccccchh
Q 047145 190 LRKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESV-GVVLKTHRTL 268 (383)
Q Consensus 190 ~~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~H~~l 268 (383)
+..+++|++||.++|+++...||++.|.++. .++.++.+|..+|.++++++++|+...+..+++.+ ...++.|+|+
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~---~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWl 120 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL---KKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWL 120 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHH
Confidence 4589999999999999999999999876653 34567899999999999999999999998876542 1247999999
Q ss_pred hHHHHHHHHHHhhhhe---eccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHccccc----CC-------CcccchhHH
Q 047145 269 GIVIFCLGTLQAFALL---LRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNIL----KP-------DNKWKQAYT 334 (383)
Q Consensus 269 G~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~----~~-------~~~~~~~~~ 334 (383)
|++++++..+|.+.|+ +.|......|....++|.++|..+++++++++.+|+... +. +.+..+.++
T Consensus 121 Gl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~~ 200 (231)
T PLN02810 121 GIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNFT 200 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHHH
Confidence 9999999999987655 578777667888889999999999999999999999663 11 334455677
Q ss_pred HHHHHHHHHHHHHHH
Q 047145 335 GCIIVLVCVAVVLEI 349 (383)
Q Consensus 335 ~~~~~~~~~~v~lei 349 (383)
+++.++.++.+++.+
T Consensus 201 Glliv~fg~~V~~~~ 215 (231)
T PLN02810 201 AIITILYGAFVVLTA 215 (231)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777776766666644
No 13
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=99.79 E-value=2.4e-19 Score=154.68 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=112.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCC-Cccccccchhh
Q 047145 191 RKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESV-GVVLKTHRTLG 269 (383)
Q Consensus 191 ~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~H~~lG 269 (383)
..+++|++||.+++.+++..+|++.|..+..+..++.+.++|+.+|.+++++.++|++..+...++.+ ...+++|+|+|
T Consensus 10 ~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlG 89 (153)
T cd08765 10 AEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVG 89 (153)
T ss_pred CeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHH
Confidence 57899999999999999999999987654433346677899999999999999999999888765542 12379999999
Q ss_pred HHHHHHHHHHhhhhe---eccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccc
Q 047145 270 IVIFCLGTLQAFALL---LRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNI 322 (383)
Q Consensus 270 ~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~ 322 (383)
++++++..+|.+.|+ +.|....+.|....++|+++|+++++++++++.+|+..
T Consensus 90 l~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~e 145 (153)
T cd08765 90 LAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITE 145 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987655 46776556788899999999999999999999999864
No 14
>PLN02680 carbon-monoxide oxygenase
Probab=99.78 E-value=5.6e-19 Score=161.52 Aligned_cols=159 Identities=20% Similarity=0.164 Sum_probs=125.5
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCC-Cccccccch
Q 047145 189 KLRKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESV-GVVLKTHRT 267 (383)
Q Consensus 189 ~~~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~H~~ 267 (383)
+..++++|++||.+++.+++..++++.|..| ..++.+..+|..+|.+++++.++|+...+..+++.+ ...++.|+|
T Consensus 43 ~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~---~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSW 119 (232)
T PLN02680 43 KDLIFNVHPVLMVIGLVLLNGEAMLAYKTVP---GTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSW 119 (232)
T ss_pred CcceEechHHHHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHH
Confidence 3468999999999999999999999966544 346677889999999999999999999888776542 123799999
Q ss_pred hhHHHHHHHHHHhhhhe---eccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHccccc----C-C-------Ccccchh
Q 047145 268 LGIVIFCLGTLQAFALL---LRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNIL----K-P-------DNKWKQA 332 (383)
Q Consensus 268 lG~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~----~-~-------~~~~~~~ 332 (383)
+|++++++..+|.+.|+ +.|......|+...++|+++|+++++++++++.+|+... . + +++..+.
T Consensus 120 lGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lvN 199 (232)
T PLN02680 120 LGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEKATFLQSNKVISRYSTEAMLVN 199 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhhhHh
Confidence 99999999999987554 567655556676779999999999999999999999652 1 1 2334556
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047145 333 YTGCIIVLVCVAVVLEIF 350 (383)
Q Consensus 333 ~~~~~~~~~~~~v~lei~ 350 (383)
.++++.+++++.+++.+.
T Consensus 200 ~~gl~~~~fg~~V~~~v~ 217 (232)
T PLN02680 200 SLGILIVVLGGFVILAIV 217 (232)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 666666666666666544
No 15
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=99.77 E-value=1.2e-17 Score=140.33 Aligned_cols=111 Identities=19% Similarity=0.303 Sum_probs=90.8
Q ss_pred CCceEEEEEEeCCCCeEEEEEEEecCCCCCeEEEEEcCCCCCCCCCcEEEEEEcCCCcEEEEEee-cccccccccCCC--
Q 047145 33 VLNAYIHYNYDSSSGKLEIGYRQTRVSSAQWVSWAVNPTEQGMVGSQALVAYRQPDGKIRAYTSP-ITQYQTTLAEGN-- 109 (383)
Q Consensus 33 ~~~~~l~W~~~~~~~~i~i~~~~~~~~~~GWVA~Gfs~~g~~M~gad~vI~~~~~~G~v~v~~~~-~~g~~~p~~~~~-- 109 (383)
.+++.|+|+++.++++++|++++... ..||+|+|||++++ |.++|+++|+.+ +|++++.|+| ..++..|..|..
T Consensus 2 ~~~~~l~w~~~~~~~~i~~~l~~~~~-~~~w~aiGfs~~~~-M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~p~~d~~~~ 78 (124)
T PF03351_consen 2 DCNFSLSWTVDGDNNTIEFELTGPAN-TNGWVAIGFSDDGG-MGGSDVVVCWVD-DGKVYVQDYYSTGGYGPPTVDDQGS 78 (124)
T ss_pred CceEEEEEEEECCCCEEEEEEEeccC-CCCEEEEEEccccC-CCCCcEEEEEEc-CCceeEEEeeccCcccceeeccccC
Confidence 45789999999777777666665432 38999999999877 999999999998 6999999999 999988888843
Q ss_pred ceeeeccccEEEeCCEEEEEEEeccCCCC---------cceeEEEeeC
Q 047145 110 LAFDVSDLTATYANNEMIIFATLGLQNGT---------TTLHQVWQQG 148 (383)
Q Consensus 110 ~~~~l~~~s~~~~~g~~~~~~~~~l~~~~---------~~~~~IwA~G 148 (383)
+++.+.. +.++++.++|.|+|++.+.+ .+.++|||+|
T Consensus 79 ~~~~~~~--~~~~~g~~~~~F~R~l~t~d~~d~~l~~~~~~~~i~A~G 124 (124)
T PF03351_consen 79 QDIQLLS--GSYSNGTTTCSFTRPLNTGDSQDYDLDSNGTYYVIWAYG 124 (124)
T ss_pred CcEEEEE--EEEECCEEEEEEEEEccCCCCCccEecCCCcEEEEEEeC
Confidence 5555544 56789999999999998842 4678999987
No 16
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.76 E-value=1.3e-18 Score=149.12 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=111.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCC-Cccccccchhh
Q 047145 191 RKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESV-GVVLKTHRTLG 269 (383)
Q Consensus 191 ~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~H~~lG 269 (383)
..+++|+++|++++.+++..++++.|..+.. .++.+.++|+.+|.+++++.++|+...+...++.+ ...++.|+|+|
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~--~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlG 82 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNE--TKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCG 82 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHH
Confidence 3899999999999999999999998866543 35666789999999999999999999887665432 12379999999
Q ss_pred HHHHHHHHHHhhhhe---eccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccc
Q 047145 270 IVIFCLGTLQAFALL---LRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNI 322 (383)
Q Consensus 270 ~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~ 322 (383)
++++++..+|.+.|+ +.|....+.|..++++|+++|+++++++++++.+|+..
T Consensus 83 l~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~e 138 (143)
T cd08763 83 ILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTE 138 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987664 46776666789999999999999999999999999864
No 17
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=99.74 E-value=8.1e-19 Score=158.74 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=113.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCC-Cccccccchh
Q 047145 190 LRKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESV-GVVLKTHRTL 268 (383)
Q Consensus 190 ~~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~H~~l 268 (383)
+..+++|+++|.++|+++.-.++++.|.+|.. .++.-+-+|..+|+.+++++++|+...+..++... ...++.|+|+
T Consensus 52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~--~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWl 129 (245)
T KOG1619|consen 52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYT--SKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWL 129 (245)
T ss_pred chhcCcchHHHHHHHHHhccceeeeeehhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHH
Confidence 57899999999999999999999999998875 34455679999999999999999999988776542 1247999999
Q ss_pred hHHHHHHHHHHhhhhe---eccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHccccc
Q 047145 269 GIVIFCLGTLQAFALL---LRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 269 G~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
|++++++..+|.+.|| +.|.-..+.|....++|+.+|..+++++++|+.+|+...
T Consensus 130 Gl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek 187 (245)
T KOG1619|consen 130 GLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEK 187 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986544 577777788999999999999999999999999999543
No 18
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein.
Probab=99.51 E-value=1.3e-13 Score=110.87 Aligned_cols=99 Identities=52% Similarity=0.861 Sum_probs=91.7
Q ss_pred CCCCcEEEEEEcCC-CcEEEEEeecccccccccCCCceeeeccccEEEeCCEEEEEEEeccCCCCcceeEEEeeCCCC-C
Q 047145 75 MVGSQALVAYRQPD-GKIRAYTSPITQYQTTLAEGNLAFDVSDLTATYANNEMIIFATLGLQNGTTTLHQVWQQGPLS-G 152 (383)
Q Consensus 75 M~gad~vI~~~~~~-G~v~v~~~~~~g~~~p~~~~~~~~~l~~~s~~~~~g~~~~~~~~~l~~~~~~~~~IwA~G~~~-~ 152 (383)
|.|+.++|++.+.+ |.+.+..|.++++.++...+.+++++.+.+++++++.++||++.+|+.+.++++++|+.|+.. +
T Consensus 1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~~l~~~~lsf~v~~lsae~~~~~~~IfAtl~Lp~n~t~vnhVWQ~G~~v~g 80 (101)
T PF04526_consen 1 MVGTQALVAFKNSNGGSVTVYTYNITSYSPSLQPGPLSFDVSDLSAEYSGGEMTIFATLKLPGNSTSVNHVWQVGPSVQG 80 (101)
T ss_pred CCCceEEEEEeCCCCceEEEEEEeecccccccccccccccccceEeEEeCCEEEEEEEEEcCCCCcEEEEEeCcCCccCC
Confidence 99999999999987 889999999999987666667888999999999999999999999999999999999999988 8
Q ss_pred CCCCCCCCCCCCCccceeeee
Q 047145 153 NVPAIHSTTGPNVQSMGTLNL 173 (383)
Q Consensus 153 ~~l~~H~~~~~n~~~~~~ldl 173 (383)
+.+..|+..+.|+.+..+|||
T Consensus 81 g~p~~H~~~~~Nl~S~gtldl 101 (101)
T PF04526_consen 81 GSPQPHPTSGANLQSKGTLDL 101 (101)
T ss_pred CccccCCCCCccccceEEecC
Confidence 999999999999999999997
No 19
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=99.35 E-value=3.2e-12 Score=104.13 Aligned_cols=88 Identities=19% Similarity=0.346 Sum_probs=75.9
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCCCc-cccccc
Q 047145 188 SKLRKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESVGV-VLKTHR 266 (383)
Q Consensus 188 ~~~~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~-~~~~H~ 266 (383)
..+....+|+++|.++|++++|+|+++.+. | . ++|.++|++.++++++|+.++....++.+++ .++.|.
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~-~------s---r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~H~ 82 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILYPIGLVLGNA-R------S---RWHLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNAHG 82 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHc-c------c---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence 456789999999999999999999998653 2 1 3599999999999999999998887776664 678999
Q ss_pred hhhHHHHHHHHHHhhhhee
Q 047145 267 TLGIVIFCLGTLQAFALLL 285 (383)
Q Consensus 267 ~lG~~~~~l~~~Q~l~~~~ 285 (383)
++|+++++++++|++.+++
T Consensus 83 k~g~il~~l~~~q~~~gv~ 101 (105)
T PF10348_consen 83 KMGWILFVLMIVQVILGVI 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999976654
No 20
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose. It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.
Probab=99.34 E-value=2.5e-11 Score=108.27 Aligned_cols=134 Identities=15% Similarity=0.118 Sum_probs=97.2
Q ss_pred CCceEEEEEEeCC---CCeEEEEEEEecCCCCCeEEEEEcCCCCCCCCCcEEEEEEcCCCcEEEEEeeccccccc-ccCC
Q 047145 33 VLNAYIHYNYDSS---SGKLEIGYRQTRVSSAQWVSWAVNPTEQGMVGSQALVAYRQPDGKIRAYTSPITQYQTT-LAEG 108 (383)
Q Consensus 33 ~~~~~l~W~~~~~---~~~i~i~~~~~~~~~~GWVA~Gfs~~g~~M~gad~vI~~~~~~G~v~v~~~~~~g~~~p-~~~~ 108 (383)
..++.+.+.+-.+ ++.-+|+++++.|.+.||+|+|. |.+|.++.++|+|+++ ++|+++.|+.+||.+| .+++
T Consensus 21 ~~~itfgialP~~a~s~~~~d~i~qi~aP~~~gW~gls~---Gg~M~~~~L~vaw~~g-~~Vt~S~R~atg~~~P~~y~g 96 (184)
T cd00241 21 VHDVTYGIVLPPDALGADSTEFIGELVAPRASGWIGLAL---GGAMTNSLLLVAWPNG-NQIVSSTRYATGYTLPDAYTG 96 (184)
T ss_pred CCCeEEEEEcCCcccCCCCCCEEEEEeCcCCCCeEEEee---cccCCCCeEEEEEcCC-CeEEEeEEEecCccCCCccCC
Confidence 3456665555322 23458899999998899999998 6679999999999975 4599999999999988 4566
Q ss_pred CceeeeccccEEEeCCEE----EEEEEeccCCC-C----cceeEEEeeCCC---C----CCCCCCCCCCCCCCccceeee
Q 047145 109 NLAFDVSDLTATYANNEM----IIFATLGLQNG-T----TTLHQVWQQGPL---S----GNVPAIHSTTGPNVQSMGTLN 172 (383)
Q Consensus 109 ~~~~~l~~~s~~~~~g~~----~~~~~~~l~~~-~----~~~~~IwA~G~~---~----~~~l~~H~~~~~n~~~~~~ld 172 (383)
+..+.++..++ .+++++ +|..|.+++.+ . ....++||+++. + +..+.+|+. .|.+.+|
T Consensus 97 ~a~~t~L~gs~-vn~t~~t~~~rC~nC~~W~~gg~~~~t~~~~~~wA~~~~~~~~p~~~~a~i~~Hd~-----~G~f~~d 170 (184)
T cd00241 97 PATITQLPSSS-VNSTHWKLVFRCQNCTSWNNGGGIDPTSQGVLAWAFSNVAVDDPSDPQSTFSEHTD-----FGFFGIN 170 (184)
T ss_pred CceEEECCCCc-EeCCEEEEEEEeCCCcccCCCCccCcCCCceEEEEECCCCCCCCCCcccCCceecC-----CcceeEe
Confidence 66788886554 467776 45556777632 1 223789998522 1 567899984 3679999
Q ss_pred eccC
Q 047145 173 LFSG 176 (383)
Q Consensus 173 l~~g 176 (383)
|...
T Consensus 171 l~~A 174 (184)
T cd00241 171 LSDA 174 (184)
T ss_pred chhc
Confidence 9854
No 21
>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]
Probab=99.05 E-value=7.9e-10 Score=108.67 Aligned_cols=133 Identities=11% Similarity=0.124 Sum_probs=99.4
Q ss_pred cccccccccC-CCCceEEEEEEeCCCCeEEEEEEEecCCCCCeEEEEEcCCCCCCCCCcEEEEEEcCCCcEEEEEeeccc
Q 047145 22 NRVFKSCNDL-PVLNAYIHYNYDSSSGKLEIGYRQTRVSSAQWVSWAVNPTEQGMVGSQALVAYRQPDGKIRAYTSPITQ 100 (383)
Q Consensus 22 ~~~y~~c~~l-~~~~~~l~W~~~~~~~~i~i~~~~~~~~~~GWVA~Gfs~~g~~M~gad~vI~~~~~~G~v~v~~~~~~g 100 (383)
...|++...+ +..+++|+|.++...+.++|.++.. +.+|++||||+.|. |.+||+++.|.+ .+...+.|+|.+.
T Consensus 30 ~s~~~~h~~~~~e~~~~lsW~vdy~~q~i~F~l~~~---t~~~v~fGfSdrG~-lanaDivv~~n~-g~~~~~~DayTn~ 104 (603)
T KOG3568|consen 30 GSTYPHHTLLDSEGKYWLSWSVDYRGQQIAFRLQVR---TAGYVGFGFSDRGA-LANADIVVGGNA-GGRPYLQDAYTNA 104 (603)
T ss_pred CCCccceeeecCCCcEEEEEeeccccceeEEEEEec---cCCEEEEecCCcCC-cccCcEEEEecc-CCchhhhhhhcCC
Confidence 4667777765 4445899999998888877766664 68999999999998 999999999875 4557899999988
Q ss_pred ccccccCCCceeeeccccEEEeCCEEEEEEEeccCCC--------CcceeEEEeeCCCC--CCCCCCCCCC
Q 047145 101 YQTTLAEGNLAFDVSDLTATYANNEMIIFATLGLQNG--------TTTLHQVWQQGPLS--GNVPAIHSTT 161 (383)
Q Consensus 101 ~~~p~~~~~~~~~l~~~s~~~~~g~~~~~~~~~l~~~--------~~~~~~IwA~G~~~--~~~l~~H~~~ 161 (383)
...-..|.++|++|+... .+...+++.|+|++.+- +++++++||.-... +-...+|+..
T Consensus 105 d~qi~~D~QQDyqll~~~--e~~~~~~i~frRkl~TCDp~Dy~i~dgTv~vv~a~~eed~r~l~~v~~~~~ 173 (603)
T KOG3568|consen 105 DGQIKKDAQQDYQLLYAM--ENSTHTIIEFRRKLHTCDPNDYSITDGTVRVVWAYLEEDARELGPVYHDSN 173 (603)
T ss_pred CCceecchhhhhHHHhhh--ccCCccEEEEecccCcCCccceeccCCeEEEEEEEeccchhhccccccccc
Confidence 877777888898887532 33344567899999773 46889999975432 2233445543
No 22
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=96.55 E-value=0.013 Score=52.22 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=35.2
Q ss_pred cccccchhhHHHHHHHHHHhh-hheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccc
Q 047145 261 VLKTHRTLGIVIFCLGTLQAF-ALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNI 322 (383)
Q Consensus 261 ~~~~H~~lG~~~~~l~~~Q~l-~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~ 322 (383)
..++|.+.|+.++.|+.++.. .-.+.+.+ ++.++..|..++.+++++-.++..+|.+.
T Consensus 113 f~spH~~~Gl~~~~L~~~s~al~~~i~~g~----~~~~R~lHi~lN~~~l~Lf~~q~itG~~i 171 (175)
T PF13301_consen 113 FWSPHLWAGLAVVGLMAFSAALVPQIQKGN----RPWARRLHIYLNSLALLLFAWQAITGWRI 171 (175)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHccCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777776643 22222221 23344577777777777777777777654
No 23
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.24 E-value=0.06 Score=49.47 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=63.5
Q ss_pred CceeeehhhhHHHHHHHHHHHHhhhhhhcccC-CCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHH
Q 047145 226 PAWFYLHVSCQLSAYIVGVAGWATGIKLGSES-VGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSV 304 (383)
Q Consensus 226 ~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~-~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~ 304 (383)
...|.+|..+|++++++...=-++.+...... +....-.|..+..+.+++.++=....+-..++..+..+-+.-.|-|+
T Consensus 21 ~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwl 100 (214)
T cd08764 21 GLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWL 100 (214)
T ss_pred CceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHH
Confidence 45799999999999976543333333322211 11123489999999998887775444322222211233455689999
Q ss_pred HHHHHHHHHHHHHHcccc
Q 047145 305 GYATIILSIINIYRGFNI 322 (383)
Q Consensus 305 G~~~~~lg~~~i~~Gl~~ 322 (383)
|.+++++-..|...|+-.
T Consensus 101 Gl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 101 GLTAVILFSLQWVGGFVS 118 (214)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999843
No 24
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.23 E-value=0.04 Score=46.40 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=61.9
Q ss_pred ehhhhHHHHHHHHH-HHHhhhhhh-ccc-CCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHH
Q 047145 231 LHVSCQLSAYIVGV-AGWATGIKL-GSE-SVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYA 307 (383)
Q Consensus 231 ~H~~~q~~~~~~~i-~g~~l~~~~-~~~-~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~ 307 (383)
+|..++++++++.. .|..+. .. ... .+......|.++.++.+++.++=...++...+..+ ++.+...|.++|.+
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~-r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~--~~~~~s~H~~lGl~ 77 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVA-RPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESG--IANFYSLHSWLGLA 77 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHh-hhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--CCCccchhHHHHHH
Confidence 48999999986544 344433 22 111 11122468999998888877766555543322222 34577889999999
Q ss_pred HHHHHHHHHHHcccccCCC
Q 047145 308 TIILSIINIYRGFNILKPD 326 (383)
Q Consensus 308 ~~~lg~~~i~~Gl~~~~~~ 326 (383)
++++..+|...|+.....+
T Consensus 78 ~~~l~~~Q~~~G~~~~~~~ 96 (129)
T smart00665 78 AFVLAGLQWLSGFLRPLPP 96 (129)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999876543
No 25
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=96.18 E-value=0.04 Score=46.52 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=62.7
Q ss_pred eeehhhhHHHHHHHHHHHHhhhhhhccc-CCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHH
Q 047145 229 FYLHVSCQLSAYIVGVAGWATGIKLGSE-SVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYA 307 (383)
Q Consensus 229 f~~H~~~q~~~~~~~i~g~~l~~~~~~~-~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~ 307 (383)
|..|..++++++++...--++....... .+......|..+.++.+++.++=....+..... +.+.-+...|.++|.+
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~--~~~~h~~s~Hs~lGl~ 79 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNA--GGIANLYSLHSWLGLA 79 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCcccchhHHHHHHHH
Confidence 5689999999987554333333333211 111224589999998888877766555543322 2234466789999999
Q ss_pred HHHHHHHHHHHccccc
Q 047145 308 TIILSIINIYRGFNIL 323 (383)
Q Consensus 308 ~~~lg~~~i~~Gl~~~ 323 (383)
++++..+|...|+...
T Consensus 80 ~~~l~~~q~~~G~~~~ 95 (131)
T cd08554 80 TVLLFLLQFLSGFVLF 95 (131)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998765
No 26
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.11 E-value=0.067 Score=46.17 Aligned_cols=94 Identities=21% Similarity=0.125 Sum_probs=62.0
Q ss_pred CceeeehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHH
Q 047145 226 PAWFYLHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVG 305 (383)
Q Consensus 226 ~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G 305 (383)
...|.+|..+|++++++...=-++.+.....++......|.++=++.+++.++=....+......+ .+-+.-.|-|+|
T Consensus 5 ~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~--~~~~~SlHSwlG 82 (144)
T cd08766 5 GLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVG--IPNLYSLHSWLG 82 (144)
T ss_pred cceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--ccccccHHHHHH
Confidence 357999999999998665543344444322222222358888888877777666544432211111 233556899999
Q ss_pred HHHHHHHHHHHHHccc
Q 047145 306 YATIILSIINIYRGFN 321 (383)
Q Consensus 306 ~~~~~lg~~~i~~Gl~ 321 (383)
.+++++-..|...|+.
T Consensus 83 l~t~~L~~lQ~~~G~~ 98 (144)
T cd08766 83 IGTISLFGLQWLFGFV 98 (144)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999975
No 27
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.09 E-value=0.034 Score=50.11 Aligned_cols=96 Identities=14% Similarity=-0.008 Sum_probs=64.9
Q ss_pred CceeeehhhhHHHHHHHHH-HHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHH
Q 047145 226 PAWFYLHVSCQLSAYIVGV-AGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSV 304 (383)
Q Consensus 226 ~~Wf~~H~~~q~~~~~~~i-~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~ 304 (383)
+..++.|..+|++++.+.. +|..++-......+.+ ...|..+=++.+++.++=...++... ...+..++..|.++
T Consensus 33 ~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~-~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~~l 108 (191)
T cd08760 33 DTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVW-FYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHAIL 108 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh-HHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcchhh
Confidence 4457899999999977654 4555442211111222 35899888877777666654444322 12345577899999
Q ss_pred HHHHHHHHHHHHHHcccccCC
Q 047145 305 GYATIILSIINIYRGFNILKP 325 (383)
Q Consensus 305 G~~~~~lg~~~i~~Gl~~~~~ 325 (383)
|.+++++.++|...|+-....
T Consensus 109 Gl~~~~l~~lQ~~~G~~~~~~ 129 (191)
T cd08760 109 GIIVLALAILQPLLGLLRPHP 129 (191)
T ss_pred hHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999976543
No 28
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=95.95 E-value=0.023 Score=48.13 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=66.9
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcc--cC----CCcc
Q 047145 188 SKLRKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGS--ES----VGVV 261 (383)
Q Consensus 188 ~~~~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~--~~----~~~~ 261 (383)
++...+.+|.+++.++..... +|+.++-+.|... +.+.....|..+-++++++++.=.++|+.... .. +...
T Consensus 30 ~~~~~~~~H~~lq~l~~~~~~-~G~~~~~~~~~~~-~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~ 107 (137)
T PF03188_consen 30 SRKWWFRIHWILQVLALVFAI-IGFVAIFINKNRN-GKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIW 107 (137)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HHHHHHHHhcccc-CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHH
Confidence 445788999999999988776 5555543334332 23445678999999998888887777765321 11 1122
Q ss_pred ccccchhhHHHHHHHHHHhhhhe
Q 047145 262 LKTHRTLGIVIFCLGTLQAFALL 284 (383)
Q Consensus 262 ~~~H~~lG~~~~~l~~~Q~l~~~ 284 (383)
...|.++|.+++++...++..|+
T Consensus 108 ~~~H~~~G~~~~~l~~~~i~~G~ 130 (137)
T PF03188_consen 108 NKWHRWLGYLIYVLAIATIFLGL 130 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999987665
No 29
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.88 E-value=0.057 Score=46.55 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=66.5
Q ss_pred eeeehhhhHHHHHHHHHHHHhhhhhhcc-cCCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHH
Q 047145 228 WFYLHVSCQLSAYIVGVAGWATGIKLGS-ESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGY 306 (383)
Q Consensus 228 Wf~~H~~~q~~~~~~~i~g~~l~~~~~~-~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~ 306 (383)
=|.+|..+|++++++...--++.+.... .++......|.++.++.+++.++=....+...+.. ..+-+.-.|-|+|.
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~~hf~SlHswlGl 83 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--GYPDMYSLHSWCGI 83 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHHHH
Confidence 5889999999999877554444443322 12222346999999999998888766554322222 23446779999999
Q ss_pred HHHHHHHHHHHHccccc
Q 047145 307 ATIILSIINIYRGFNIL 323 (383)
Q Consensus 307 ~~~~lg~~~i~~Gl~~~ 323 (383)
+++++-..|...|+...
T Consensus 84 ~t~~L~~lQ~~~G~~~f 100 (143)
T cd08763 84 LTFVLYFLQWLIGFSFF 100 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998654
No 30
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.68 E-value=0.039 Score=49.46 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=65.6
Q ss_pred CCceeeehhhhHHHHHHHHHHHHhhhhhhccc----CCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeeh
Q 047145 225 GPAWFYLHVSCQLSAYIVGVAGWATGIKLGSE----SVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFY 300 (383)
Q Consensus 225 ~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~----~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~ 300 (383)
....|.+|..+|.+++++....-++.+..... ++......|.++-.+.+++.++=....+.. ++.+.++-++-.
T Consensus 17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~--~~~~~~~hf~s~ 94 (183)
T cd08761 17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYN--KERNGKPHFTSW 94 (183)
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCCCCccch
Confidence 34578999999999988776544444432111 122224689999998888777665433322 121224556678
Q ss_pred hHHHHHHHHHHHHHHHHHcccc
Q 047145 301 HHSVGYATIILSIINIYRGFNI 322 (383)
Q Consensus 301 H~~~G~~~~~lg~~~i~~Gl~~ 322 (383)
|.++|.+++++-++|...|+-.
T Consensus 95 H~~lGl~~~~l~~~Q~~~G~~~ 116 (183)
T cd08761 95 HGILGLVTVILIVLQALGGLAL 116 (183)
T ss_pred hHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999954
No 31
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.60 E-value=0.45 Score=42.43 Aligned_cols=97 Identities=18% Similarity=0.083 Sum_probs=62.6
Q ss_pred CCceeeehhhhHHHHHHHHHHHHhhhhhhcc-c--CCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehh
Q 047145 225 GPAWFYLHVSCQLSAYIVGVAGWATGIKLGS-E--SVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYH 301 (383)
Q Consensus 225 ~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~-~--~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H 301 (383)
.+..|.+|-.+|++++++.-.=.++.+.... + ++......|..+=.+.+++.++-....+-..+..+ .+=.--.|
T Consensus 31 ~~~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~--~~nlySlH 108 (179)
T cd08762 31 SSKNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHH--TANLYSLH 108 (179)
T ss_pred CCCceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--ccchhhHH
Confidence 3447999999999999877433333333221 1 11122458888888888877776655443222211 12223369
Q ss_pred HHHHHHHHHHHHHHHHHccccc
Q 047145 302 HSVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 302 ~~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
-|+|..++++=..|...|+-..
T Consensus 109 SWlGl~t~~Lf~lQ~~~Gf~~f 130 (179)
T cd08762 109 SWVGICTVALFTCQWVMGFTSF 130 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998655
No 32
>PLN02680 carbon-monoxide oxygenase
Probab=95.34 E-value=0.48 Score=44.03 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=61.9
Q ss_pred eeeehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHH
Q 047145 228 WFYLHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYA 307 (383)
Q Consensus 228 Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~ 307 (383)
=|.+|-.+|++++++...--++.+.....++......|..+=.+.+++.++=....+ +-+.+. .+.-+.-.|-|+|.+
T Consensus 46 ~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avf-k~hn~~-~~~nfySlHSWlGl~ 123 (232)
T PLN02680 46 IFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAAL-KFHNEK-GIDNFYSLHSWLGLA 123 (232)
T ss_pred eEechHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc-CccccccHHHHHHHH
Confidence 589999999999998654333343332222223345788887777777666554433 222221 133455689999999
Q ss_pred HHHHHHHHHHHccccc
Q 047145 308 TIILSIINIYRGFNIL 323 (383)
Q Consensus 308 ~~~lg~~~i~~Gl~~~ 323 (383)
++++-..|...|+-..
T Consensus 124 t~iL~~lQ~~~Gf~~f 139 (232)
T PLN02680 124 CLFLFSLQWAAGFVTF 139 (232)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998663
No 33
>PLN02810 carbon-monoxide oxygenase
Probab=94.24 E-value=1.9 Score=39.99 Aligned_cols=94 Identities=20% Similarity=0.078 Sum_probs=62.8
Q ss_pred CceeeehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHH
Q 047145 226 PAWFYLHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVG 305 (383)
Q Consensus 226 ~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G 305 (383)
+.=|.+|-.+|++++++.-.=-++.+......+......|..+=.+.+++.++-....+-..+.. + .+=+--.|-|+|
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~-~-i~nlySLHSWlG 121 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES-G-IANLYSLHSWLG 121 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-C-CCceeeHHHHHH
Confidence 34689999999999887754344444332212223346888888888777776655544222222 2 233455899999
Q ss_pred HHHHHHHHHHHHHccc
Q 047145 306 YATIILSIINIYRGFN 321 (383)
Q Consensus 306 ~~~~~lg~~~i~~Gl~ 321 (383)
..++++=..|-..|+-
T Consensus 122 l~tv~Lf~lQw~~Gf~ 137 (231)
T PLN02810 122 IGIISLYGIQWIYGFI 137 (231)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999993
No 34
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=93.38 E-value=0.86 Score=39.69 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=60.8
Q ss_pred CceeeehhhhHHHHHHHHHHHHhhhhhhcc---cCCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhH
Q 047145 226 PAWFYLHVSCQLSAYIVGVAGWATGIKLGS---ESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHH 302 (383)
Q Consensus 226 ~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~---~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~ 302 (383)
+.=|.+|-.+|++++++.-.=.++.+.... .++......|.++=.+.+++.++=....+-..+..+ .+-+.-.|-
T Consensus 9 ~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~--~~~fySlHS 86 (153)
T cd08765 9 AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKN--IPNMYSLHS 86 (153)
T ss_pred CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccC--CCccccHHH
Confidence 445899999999998884322233332110 112223457877777666666655444332222222 344667999
Q ss_pred HHHHHHHHHHHHHHHHccccc
Q 047145 303 SVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 303 ~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
|+|.+++++-..|...|+..+
T Consensus 87 wlGl~t~~l~~lQ~~~Gf~~f 107 (153)
T cd08765 87 WVGLAAVILYPLQLVLGISVY 107 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998665
No 35
>PLN02351 cytochromes b561 family protein
Probab=93.18 E-value=0.9 Score=42.42 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=58.4
Q ss_pred ceeeehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHH
Q 047145 227 AWFYLHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGY 306 (383)
Q Consensus 227 ~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~ 306 (383)
..|.+|-.+|++++++.-.=-++.+.....++......|..+=.+.+++.++-...-+ +......+=+--.|-|+|.
T Consensus 49 iffn~HP~lMviGfi~L~geAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a~f---h~~~~~i~nlySLHSWlGl 125 (242)
T PLN02351 49 VYAVLHPLLMVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWTKF---HGQDGIVANFYSLHSWMGL 125 (242)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHH---hcccCCccchhHHHHHHHH
Confidence 3347999999999987754333444443222222345787776666666554443321 1111111223446999999
Q ss_pred HHHHHHHHHHHHccccc
Q 047145 307 ATIILSIINIYRGFNIL 323 (383)
Q Consensus 307 ~~~~lg~~~i~~Gl~~~ 323 (383)
+++++=.+|-..|+-..
T Consensus 126 ~tv~Lf~lQwv~Gf~~F 142 (242)
T PLN02351 126 ICVSLFGAQWLTGFMSF 142 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998654
No 36
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=93.06 E-value=0.69 Score=42.89 Aligned_cols=94 Identities=20% Similarity=0.148 Sum_probs=65.0
Q ss_pred ceeeehhhhHHHHHHHHHHHHhh-hhhh-cccCCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHH
Q 047145 227 AWFYLHVSCQLSAYIVGVAGWAT-GIKL-GSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSV 304 (383)
Q Consensus 227 ~Wf~~H~~~q~~~~~~~i~g~~l-~~~~-~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~ 304 (383)
.-|.+|-.+|++|++..- |..+ .+.. ...++....-.|..+=++.+++.++-....+...+..+. .=+--.|-|+
T Consensus 53 ~~fnlHP~lMviGfI~l~-GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i--~NfySLHSWl 129 (245)
T KOG1619|consen 53 KEFNLHPVLMVIGFIYLQ-GEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGI--ANFYSLHSWL 129 (245)
T ss_pred hhcCcchHHHHHHHHHhc-cceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--cceeeHHHHH
Confidence 458899999999988653 4333 2233 222333345689999999999888877666643333331 2244589999
Q ss_pred HHHHHHHHHHHHHHccccc
Q 047145 305 GYATIILSIINIYRGFNIL 323 (383)
Q Consensus 305 G~~~~~lg~~~i~~Gl~~~ 323 (383)
|..++++=.+|-..|+--+
T Consensus 130 Gl~~v~ly~~Q~v~GF~tf 148 (245)
T KOG1619|consen 130 GLCVVILYSLQWVFGFFTF 148 (245)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998655
No 37
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=91.55 E-value=0.35 Score=42.67 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=59.3
Q ss_pred ehhhhHHHHHHHHHHHHhhhhh----hcccC-CCccccccchhhHHHHHHHHHHhhhheec-------------------
Q 047145 231 LHVSCQLSAYIVGVAGWATGIK----LGSES-VGVVLKTHRTLGIVIFCLGTLQAFALLLR------------------- 286 (383)
Q Consensus 231 ~H~~~q~~~~~~~i~g~~l~~~----~~~~~-~~~~~~~H~~lG~~~~~l~~~Q~l~~~~r------------------- 286 (383)
+|+..-++-+++.+.|+.+... ..... .......|..+|++.+++.++..+..+.+
T Consensus 11 ~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (188)
T PF00033_consen 11 LHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYRL 90 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhhc
Confidence 6776666666666667766421 11111 11234789999999999999998766655
Q ss_pred -cCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccc
Q 047145 287 -PKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNI 322 (383)
Q Consensus 287 -p~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~ 322 (383)
+.++.+.....+...++.-.+++++..+.+.+|+-+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 91 FPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp T-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223345578888899999999999999999988
No 38
>COG2717 Predicted membrane protein [Function unknown]
Probab=89.50 E-value=2.4 Score=38.80 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhh--hc-ccC---CCccccccchhhHHH
Q 047145 199 LNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIK--LG-SES---VGVVLKTHRTLGIVI 272 (383)
Q Consensus 199 lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~--~~-~~~---~~~~~~~H~~lG~~~ 272 (383)
...+.|..++-+....+|+.+. +.+.++-+.+-+.+++.++.=+..-+. .. +.+ .+..+.+=-.+|++.
T Consensus 49 ~~al~fLl~~la~tp~~~~~~~-----~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~~~~~~~d~~~rpyitiG~ia 123 (209)
T COG2717 49 IWALIFLLVTLAVTPLARLLKQ-----PKLIRIRRALGLWAFFYALLHFTAYLVLDLGLDLALLGLDLLKRPYITIGMIA 123 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhHHHHHhHHHHHHHHH
Confidence 3444455555455555565442 445566677766666655443222111 11 000 112234555677777
Q ss_pred HHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHc
Q 047145 273 FCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRG 319 (383)
Q Consensus 273 ~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G 319 (383)
+++++.-.+...-.-.++ .-+.|+.+|++ +|.+++||.+=...+
T Consensus 124 flll~pLalTS~k~~~rr--lG~rW~~LHrL-vYl~~~L~~lH~~~s 167 (209)
T COG2717 124 FLLLIPLALTSFKWVRRR--LGKRWKKLHRL-VYLALILGALHYLWS 167 (209)
T ss_pred HHHHHHHHHHhhHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 766655544332110111 11559999985 688888888888773
No 39
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=89.46 E-value=1.1 Score=36.46 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=52.2
Q ss_pred CCCceeeehhhhHHHHHHHH-HHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhH
Q 047145 224 AGPAWFYLHVSCQLSAYIVG-VAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHH 302 (383)
Q Consensus 224 ~~~~Wf~~H~~~q~~~~~~~-i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~ 302 (383)
+.+...+.|..+|++++++. -+|++++..- + +.|...=++-+++.++-.+.+...-... + ..+.+-.|.
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~---s-----r~~~~~q~~~~~l~~~g~~~g~~~~~~~-p-~lyp~n~H~ 82 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILYPIGLVLGNAR---S-----RWHLPVQTVFLVLMILGLFLGSVYNGST-P-DLYPNNAHG 82 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHcc---c-----hHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-CCCCCCHHH
Confidence 45667889999999886544 4555554322 1 2344333333333333332222211111 1 144678999
Q ss_pred HHHHHHHHHHHHHHHHccc
Q 047145 303 SVGYATIILSIINIYRGFN 321 (383)
Q Consensus 303 ~~G~~~~~lg~~~i~~Gl~ 321 (383)
-+|++++++.+++.++|+-
T Consensus 83 k~g~il~~l~~~q~~~gv~ 101 (105)
T PF10348_consen 83 KMGWILFVLMIVQVILGVI 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999874
No 40
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=88.90 E-value=1.2 Score=36.13 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=26.3
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHHHcccccCC
Q 047145 294 RIYWNFYHHSVGYATIILSIINIYRGFNILKP 325 (383)
Q Consensus 294 r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~ 325 (383)
|+.....|+++||+-+++..+....|+.+...
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~~~ 33 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFIAFY 33 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44566799999999999999999999877643
No 41
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=84.85 E-value=5 Score=34.07 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=21.9
Q ss_pred cceeeeehhHHHHHHHHHHHHHHHHHcc
Q 047145 293 YRIYWNFYHHSVGYATIILSIINIYRGF 320 (383)
Q Consensus 293 ~r~~~~~~H~~~G~~~~~lg~~~i~~Gl 320 (383)
.++++.....+.||.++.+=+..+.++.
T Consensus 57 i~~~~~FL~~~~GRGlfyif~G~l~~~~ 84 (136)
T PF08507_consen 57 IRKYFGFLYSYIGRGLFYIFLGTLCLGQ 84 (136)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHHHHhh
Confidence 6788888999999998877666666555
No 42
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=84.73 E-value=0.68 Score=29.51 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=24.1
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHHHccccc
Q 047145 294 RIYWNFYHHSVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 294 r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
|+.+..+|+++|..+.+.-.+-+.+|+.+.
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~ 31 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALLN 31 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566778899999998888888888887654
No 43
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=84.35 E-value=2.2 Score=37.53 Aligned_cols=129 Identities=19% Similarity=0.119 Sum_probs=73.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHh---hhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhh---------------
Q 047145 192 KRNIHGVLNAVSWGLLMPIGVIIARY---LKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKL--------------- 253 (383)
Q Consensus 192 ~~~~Hg~lm~~aw~~l~P~gil~aR~---~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~--------------- 253 (383)
.+..| +++++.+.+++..|..+... ...........+.+|..+-++-+++.+.=++..+..
T Consensus 8 ~R~~H-w~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T PF00033_consen 8 TRLLH-WLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP 86 (188)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence 34566 47788899999999988521 111111233456788887766655554444433333
Q ss_pred ---c-c----cCCCccccccchhhHHHHHHHHHHhhhheec--------cCCC---CCcceeeeehhHHHHHHHHHHHHH
Q 047145 254 ---G-S----ESVGVVLKTHRTLGIVIFCLGTLQAFALLLR--------PKPD---HKYRIYWNFYHHSVGYATIILSII 314 (383)
Q Consensus 254 ---~-~----~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~r--------p~~~---~~~r~~~~~~H~~~G~~~~~lg~~ 314 (383)
. . ...+..+...+..-++++++.+++++.|+.. +... .........+|.+.+.+++++-.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~ 166 (188)
T PF00033_consen 87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIII 166 (188)
T ss_dssp HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0011123466677777777788888766543 1111 123456778888888888777766
Q ss_pred HHHHccc
Q 047145 315 NIYRGFN 321 (383)
Q Consensus 315 ~i~~Gl~ 321 (383)
=++.++.
T Consensus 167 Hi~~a~~ 173 (188)
T PF00033_consen 167 HIYAAIF 173 (188)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 44
>COG5658 Predicted integral membrane protein [Function unknown]
Probab=84.11 E-value=3.8 Score=37.32 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=32.3
Q ss_pred CcceeeeehhHHHHHHHHHHHHHHHHHcccccCCCcccchhHHH
Q 047145 292 KYRIYWNFYHHSVGYATIILSIINIYRGFNILKPDNKWKQAYTG 335 (383)
Q Consensus 292 ~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~~~~~~~~~~~ 335 (383)
+-+..|++.|+++|-.+++.+.+....+.......+-+...+..
T Consensus 40 ~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~~~~~~~~~v~~~ 83 (204)
T COG5658 40 PDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAGGQGQMLLAVALF 83 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHHHH
Confidence 34567999999999999999999998887665554434444433
No 45
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=83.79 E-value=9.4 Score=34.05 Aligned_cols=68 Identities=18% Similarity=0.080 Sum_probs=49.5
Q ss_pred ccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccccCCCc-ccch
Q 047145 262 LKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNILKPDN-KWKQ 331 (383)
Q Consensus 262 ~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~~~-~~~~ 331 (383)
...|..+|..+++++.+-.+++..--.... .+.+..-|-|.|..+..|=.++..+.-.+...++ .|..
T Consensus 80 r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~--~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R~ 148 (175)
T PF13301_consen 80 RDRHYRLGFALLAFMGLGALGGQLGTYRQN--GKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWARR 148 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHcC--CCCccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHHH
Confidence 468999999999999998887653111111 1255556999999999999999999888876433 4444
No 46
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=83.37 E-value=3.6 Score=39.30 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHhhhhhhcc---cCCCccccccchhhHHHHHHHHHHhhhheec---cCCCCCcceeeeehhHHHHHHH
Q 047145 235 CQLSAYIVGVAGWATGIKLGS---ESVGVVLKTHRTLGIVIFCLGTLQAFALLLR---PKPDHKYRIYWNFYHHSVGYAT 308 (383)
Q Consensus 235 ~q~~~~~~~i~g~~l~~~~~~---~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~r---p~~~~~~r~~~~~~H~~~G~~~ 308 (383)
+-.+..+++++|++-++.+-. +.+++.---|-..|+..++-.++-.++-+.| ..-..+-|+.|.+ ..
T Consensus 157 Liav~~~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~~-------lV 229 (347)
T PF10951_consen 157 LIAVPILCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWPK-------LV 229 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhHH-------HH
Confidence 344566777777777766542 2233333568888888877666655555543 3333444555554 45
Q ss_pred HHHHHHHHHHccccc
Q 047145 309 IILSIINIYRGFNIL 323 (383)
Q Consensus 309 ~~lg~~~i~~Gl~~~ 323 (383)
+++|-+++..|+...
T Consensus 230 l~mGsi~~l~Gl~vl 244 (347)
T PF10951_consen 230 LVMGSISILWGLYVL 244 (347)
T ss_pred HHHhhHHHHhhhheE
Confidence 566666666666554
No 47
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=82.59 E-value=0.98 Score=37.65 Aligned_cols=69 Identities=13% Similarity=0.344 Sum_probs=36.5
Q ss_pred eeehh--HHHHHHHHHHHHHHHHHcccccCCCcccchhHHHHHHHHHHHHHHHHHHHhhHhhhcccCCCCCC
Q 047145 297 WNFYH--HSVGYATIILSIINIYRGFNILKPDNKWKQAYTGCIIVLVCVAVVLEIFTWALVIKRKKSGSGDK 366 (383)
Q Consensus 297 ~~~~H--~~~G~~~~~lg~~~i~~Gl~~~~~~~~~~~~~~~~~~~~~~~~v~lei~~w~~~~~~~~~~~~~~ 366 (383)
|.++| .-+|-+++++|++-..+.+.+-...+... .+..++..+.++.++....-|+..+|||+++|++.
T Consensus 46 ~s~Yrci~pfG~vili~GvvvT~vays~n~~~si~~-~~G~vlLs~GLmlL~~~alcW~~~~rkK~~kr~eS 116 (129)
T PF15099_consen 46 WSCYRCIMPFGVVILIAGVVVTAVAYSFNSHGSIIS-IFGPVLLSLGLMLLACSALCWKPIIRKKKKKRRES 116 (129)
T ss_pred ceEEEEEEEehHHHHHHhhHhheeeEeecCCcchhh-hehHHHHHHHHHHHHhhhheehhhhHhHHHHhhhh
Confidence 44444 56788899999887766666533333222 22323333344334444456776555555444443
No 48
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=79.74 E-value=16 Score=33.08 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=25.8
Q ss_pred eeeeehhHHHHHHHHHHHHHHHHHccccc
Q 047145 295 IYWNFYHHSVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 295 ~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
..+|...+..-.+++++..+.+.+|+-++
T Consensus 102 ~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~ 130 (204)
T TIGR01583 102 GKYNAGQKSWYWILVLGGFLMIITGIFMW 130 (204)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44799999999999999999999999997
No 49
>PF13630 SdpI: SdpI/YhfL protein family
Probab=77.32 E-value=1.9 Score=32.43 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=28.7
Q ss_pred CcceeeeehhHHHHHHHHHHHHHHHHHcccccCC
Q 047145 292 KYRIYWNFYHHSVGYATIILSIINIYRGFNILKP 325 (383)
Q Consensus 292 ~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~ 325 (383)
+....|+..|+..|...++.|++.+..++.....
T Consensus 18 ~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~~~ 51 (76)
T PF13630_consen 18 KSDENWKKAHRFAGKIFIIGGIVLLIIGIIILFL 51 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999988876543
No 50
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=75.91 E-value=2.2 Score=27.73 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=21.3
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHHHcccc
Q 047145 294 RIYWNFYHHSVGYATIILSIINIYRGFNI 322 (383)
Q Consensus 294 r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~ 322 (383)
|+.+...|+|+|.++-++-.+-++.|.-+
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 35567789999988877777777777544
No 51
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=75.33 E-value=34 Score=29.75 Aligned_cols=91 Identities=21% Similarity=0.159 Sum_probs=46.1
Q ss_pred ehhhhHHHHHHHHHHHHhhhhhhcccCCC-cc--ccccchhhHHHHHHHHHHhhhh---------------------eec
Q 047145 231 LHVSCQLSAYIVGVAGWATGIKLGSESVG-VV--LKTHRTLGIVIFCLGTLQAFAL---------------------LLR 286 (383)
Q Consensus 231 ~H~~~q~~~~~~~i~g~~l~~~~~~~~~~-~~--~~~H~~lG~~~~~l~~~Q~l~~---------------------~~r 286 (383)
+|+..-+..+++.+.|+.+-........+ .. ...|.++|++++++.++=.+.. ..+
T Consensus 9 ~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (182)
T PF01292_consen 9 LHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYFLLR 88 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhc
Confidence 46555555555555555432221111101 11 4578888888877765554433 111
Q ss_pred cCCCCCcceeeeehhHHHHHHHHHHHHHHHHHccccc
Q 047145 287 PKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 287 p~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
.++ +....++..-+..-.+.+++..+.+.+|+-++
T Consensus 89 ~~~--p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~ 123 (182)
T PF01292_consen 89 GKP--PPAGKYNPGQKIVHWVLYLLLLLLPITGLLLW 123 (182)
T ss_pred CCC--CCCCcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11122344445566667777777777887774
No 52
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=75.32 E-value=15 Score=33.07 Aligned_cols=28 Identities=18% Similarity=0.327 Sum_probs=22.5
Q ss_pred eeehhHHHHHHHHHHHHHHHHHcccccC
Q 047145 297 WNFYHHSVGYATIILSIINIYRGFNILK 324 (383)
Q Consensus 297 ~~~~H~~~G~~~~~lg~~~i~~Gl~~~~ 324 (383)
.|..-++.-.+++++..+.+.+|+-+..
T Consensus 112 ~n~~~k~~~~~l~~~~~~~~lTG~~~~~ 139 (211)
T TIGR02125 112 YNPLQFVAYFGFIVLILFMILTGLALYY 139 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777778888889999999988764
No 53
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=74.91 E-value=9.4 Score=31.46 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=34.6
Q ss_pred cccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHccc
Q 047145 263 KTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFN 321 (383)
Q Consensus 263 ~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~ 321 (383)
-.|-++|.++.+++++-+..++.+|.+..+ +.|.+++..+++..+..+.+-..
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~p~------p~~iffavcI~l~~~s~~lLI~W 81 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDPPK------PLHIFFAVCILLICISAILLIFW 81 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCCCC------ceEEehHHHHHHHHHHHHhheee
Confidence 467778888777777766666666544322 34667777777776666665544
No 54
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=73.73 E-value=7.1 Score=31.75 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHhhhheeccCC-----CCCcceeeeehhHHHHHHHHHHHHHHHH
Q 047145 268 LGIVIFCLGTLQAFALLLRPKP-----DHKYRIYWNFYHHSVGYATIILSIINIY 317 (383)
Q Consensus 268 lG~~~~~l~~~Q~l~~~~rp~~-----~~~~r~~~~~~H~~~G~~~~~lg~~~i~ 317 (383)
+|.+.++++.++.+.+ .|+.+ .-+..+ ...+|+++|+.+++++.+=..
T Consensus 1 ~G~~a~~~l~~~~~l~-~R~~~l~~~~~~~~~~-~~~~Hr~lg~~~~~~~~~H~~ 53 (125)
T PF01794_consen 1 LGILAFALLPLVFLLG-LRNSPLARLTGISFDR-LLRFHRWLGRLAFFLALLHGV 53 (125)
T ss_pred CHHHHHHHHHHHHHHH-HhhhHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666665543 33321 111122 334899999988888876543
No 55
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=73.48 E-value=36 Score=31.71 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=40.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHH
Q 047145 194 NIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIF 273 (383)
Q Consensus 194 ~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~ 273 (383)
...++-|.+|..+.+-....+...+|++- + ..+++..+++.++.++..+.+.-+ .+....|..+|+.+=
T Consensus 35 ~~nalgmGlA~~~Vl~~S~~~~sllr~~i---~------~~lRi~v~IlvIA~~V~~v~~~L~--a~~p~l~~~LGiflp 103 (231)
T PRK12405 35 ATNALGLGLATTLVLVCSNLTVSLLRKWI---P------KEIRIPIFVMIIASFVTVVQLLMN--AYAYGLYQSLGIFIP 103 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---h------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhh
Confidence 44678888888877777776666666541 1 226666777666666655432211 122345666666544
Q ss_pred H
Q 047145 274 C 274 (383)
Q Consensus 274 ~ 274 (383)
.
T Consensus 104 L 104 (231)
T PRK12405 104 L 104 (231)
T ss_pred H
Confidence 3
No 56
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=72.45 E-value=18 Score=31.54 Aligned_cols=125 Identities=18% Similarity=0.122 Sum_probs=61.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCce--eeehhhhHHHHHHHHHHHHhhh------------------h
Q 047145 192 KRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAW--FYLHVSCQLSAYIVGVAGWATG------------------I 251 (383)
Q Consensus 192 ~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~W--f~~H~~~q~~~~~~~i~g~~l~------------------~ 251 (383)
.+..| +++++++.+++..|..+..-.+... ....+ +.+|..+-.+-.++.+.-+... +
T Consensus 6 ~r~~H-W~~a~~~i~l~~tG~~~~~~~~~~~-~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
T PF01292_consen 6 TRILH-WLNALSFIALIATGLWIHFPPPGLY-FGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYL 83 (182)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhccccccc-ccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 34556 4566777777778887643222111 11122 4678886655444443333322 0
Q ss_pred --hhcccCCCc-ccc-ccchhhHHHHHHHHHHhhhheec-c---C------CCCCcceeeeehhHHHHHHHHHHHHHHHH
Q 047145 252 --KLGSESVGV-VLK-THRTLGIVIFCLGTLQAFALLLR-P---K------PDHKYRIYWNFYHHSVGYATIILSIINIY 317 (383)
Q Consensus 252 --~~~~~~~~~-~~~-~H~~lG~~~~~l~~~Q~l~~~~r-p---~------~~~~~r~~~~~~H~~~G~~~~~lg~~~i~ 317 (383)
....+.+.. .++ .-...-.+++++..++++.|++. . . ...........+|.+.+..++++-.+=++
T Consensus 84 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv~ 163 (182)
T PF01292_consen 84 YFLLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHVY 163 (182)
T ss_pred HHHhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111 122 22334666667777787755532 1 1 11223455677787777776655544444
Q ss_pred H
Q 047145 318 R 318 (383)
Q Consensus 318 ~ 318 (383)
.
T Consensus 164 ~ 164 (182)
T PF01292_consen 164 A 164 (182)
T ss_pred H
Confidence 3
No 57
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=70.96 E-value=6.6 Score=32.09 Aligned_cols=29 Identities=21% Similarity=0.605 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhcccCC
Q 047145 334 TGCIIVLVCVAVVLEIFTWALVIKRKKSG 362 (383)
Q Consensus 334 ~~~~~~~~~~~v~lei~~w~~~~~~~~~~ 362 (383)
.+++++++++.++.-+..|++.+||+|..
T Consensus 4 l~il~llLll~l~asl~~wr~~~rq~k~~ 32 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMKQRQKKAG 32 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 34556666666777888999888777633
No 58
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=69.29 E-value=30 Score=36.01 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=4.6
Q ss_pred HHHHHhhHhhhc
Q 047145 347 LEIFTWALVIKR 358 (383)
Q Consensus 347 lei~~w~~~~~~ 358 (383)
+....|...+||
T Consensus 452 ~~~~~y~~~~~~ 463 (507)
T TIGR00910 452 LPFIIYALHDKK 463 (507)
T ss_pred HHHHHHHHhccc
Confidence 333344433333
No 59
>PRK11513 cytochrome b561; Provisional
Probab=68.67 E-value=9.4 Score=33.94 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.0
Q ss_pred ccccchhhHHHHHHHHHHhhhheec
Q 047145 262 LKTHRTLGIVIFCLGTLQAFALLLR 286 (383)
Q Consensus 262 ~~~H~~lG~~~~~l~~~Q~l~~~~r 286 (383)
+..|..+|+++++++++-.+-.+.+
T Consensus 42 ~~~H~s~G~~vl~L~v~Rl~~r~~~ 66 (176)
T PRK11513 42 NMIHVSCGISILVLMVVRLLLRLKY 66 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999998766653
No 60
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=68.40 E-value=22 Score=38.26 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHcc
Q 047145 300 YHHSVGYATIILSIINIYRGF 320 (383)
Q Consensus 300 ~H~~~G~~~~~lg~~~i~~Gl 320 (383)
+-..+|+.++++|.+-..++.
T Consensus 478 ~~~~~~w~l~~~g~~~~~~~~ 498 (646)
T PRK05771 478 FLAQLGWLLILLGILLIVLGG 498 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334577777777877776654
No 61
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=68.27 E-value=6.1 Score=26.70 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhccc
Q 047145 332 AYTGCIIVLVCVAVVLEIFTWALVIKRKK 360 (383)
Q Consensus 332 ~~~~~~~~~~~~~v~lei~~w~~~~~~~~ 360 (383)
.|.+++++-...++-|.+++-...-|.|+
T Consensus 8 iFsvvIil~If~~iGl~IyQkikqIrgKk 36 (49)
T PF11044_consen 8 IFSVVIILGIFAWIGLSIYQKIKQIRGKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444444556666665444444443
No 62
>PHA02898 virion envelope protein; Provisional
Probab=65.23 E-value=34 Score=26.80 Aligned_cols=59 Identities=14% Similarity=0.252 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHcccccCC--CcccchhHHHHHHHHHHHHHHHHH---HHhhHhhhcccCC
Q 047145 302 HSVGYATIILSIINIYRGFNILKP--DNKWKQAYTGCIIVLVCVAVVLEI---FTWALVIKRKKSG 362 (383)
Q Consensus 302 ~~~G~~~~~lg~~~i~~Gl~~~~~--~~~~~~~~~~~~~~~~~~~v~lei---~~w~~~~~~~~~~ 362 (383)
.+.|.++++++.+=.+.=+.-..+ +..|..+-+ +++++++.+.+.+ ..|.++|+..+..
T Consensus 15 li~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSi--i~FIlgivl~lG~~ifs~y~r~C~~~~~~ 78 (92)
T PHA02898 15 VAFGIILLIVACICAYIELSKSEKPADSALRSISI--ISFILAIILILGIIFFKGYNMFCGGNTTD 78 (92)
T ss_pred HHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 456777777666655544433332 345665433 3344444444433 2466677655543
No 63
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=64.82 E-value=27 Score=31.34 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=21.1
Q ss_pred cccccchhhHHHHHHHHHHhhhheec
Q 047145 261 VLKTHRTLGIVIFCLGTLQAFALLLR 286 (383)
Q Consensus 261 ~~~~H~~lG~~~~~l~~~Q~l~~~~r 286 (383)
.+..|..+|+.++.|+++-.+--+.-
T Consensus 46 ~~~~Hks~Gi~vl~L~v~Rl~wrl~~ 71 (181)
T COG3038 46 LYELHKSIGILVLALMVLRLLWRLRN 71 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35799999999999999988766543
No 64
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=63.34 E-value=27 Score=28.18 Aligned_cols=53 Identities=17% Similarity=0.397 Sum_probs=34.7
Q ss_pred chhhhhhhHHHHHHHHHHHH--HHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhh
Q 047145 190 LRKRNIHGVLNAVSWGLLMP--IGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIK 252 (383)
Q Consensus 190 ~~~~~~Hg~lm~~aw~~l~P--~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~ 252 (383)
......=|.+-.++|-+..| +|+++.|++=......+.| .+++.++|+++|+.
T Consensus 36 ~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~----------tl~~lllGv~~G~~ 90 (100)
T TIGR02230 36 RSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSW----------TLTMLIVGVVIGCL 90 (100)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHH----------HHHHHHHHHHHHHH
Confidence 35677778888999999998 5777788765432122222 45566667777654
No 65
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=60.97 E-value=16 Score=28.44 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=23.1
Q ss_pred CcceeeeehhHHHHHHHHHHHHHHHHHcccc
Q 047145 292 KYRIYWNFYHHSVGYATIILSIINIYRGFNI 322 (383)
Q Consensus 292 ~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~ 322 (383)
+.|+ +...|+.+|....+.-.+=+.+|+.+
T Consensus 56 ~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~ 85 (88)
T PF13703_consen 56 SKRR-WFDLHRVLGLWFLPFLLVIALTGLFF 85 (88)
T ss_pred ccCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 66699999999888888888887654
No 66
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=60.94 E-value=43 Score=30.79 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=25.8
Q ss_pred eeeeehhHHHHHHHHHHHHHHHHHccccc
Q 047145 295 IYWNFYHHSVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 295 ~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
..+|...+..-..+++++++.+.+|+-++
T Consensus 107 gk~N~~QKl~y~~i~~~~~~~i~TGl~l~ 135 (217)
T PRK10179 107 GKYNAGQKMMFWSIMSMIFVLLVTGVIIW 135 (217)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999886
No 67
>COG4244 Predicted membrane protein [Function unknown]
Probab=60.42 E-value=20 Score=31.39 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=12.9
Q ss_pred ceeeehhhhHHHHHHHHHHHHhhhh
Q 047145 227 AWFYLHVSCQLSAYIVGVAGWATGI 251 (383)
Q Consensus 227 ~Wf~~H~~~q~~~~~~~i~g~~l~~ 251 (383)
.|+..=+.....+.+.++..++.++
T Consensus 46 ~~~~vs~wn~~~a~i~~~~A~~~g~ 70 (160)
T COG4244 46 RWFDVSWWNLFAALIAGFFAVIAGL 70 (160)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444443
No 68
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=59.66 E-value=73 Score=29.03 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=24.1
Q ss_pred eeeeehhHHHHHHHHHHHHHHHHHccccc
Q 047145 295 IYWNFYHHSVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 295 ~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
..+|...+..-..++++.++.+.+|+-+.
T Consensus 105 ~kyN~~qk~~y~~~~~~~~~~~iTGl~l~ 133 (211)
T PRK10639 105 GRYNFGQKCVFWAAIIFLVLLLVSGVIIW 133 (211)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888888888889999999875
No 69
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=58.63 E-value=77 Score=28.94 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=17.1
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHcc
Q 047145 296 YWNFYHHSVGYATIILSIINIYRGF 320 (383)
Q Consensus 296 ~~~~~H~~~G~~~~~lg~~~i~~Gl 320 (383)
.|+..|+. .+.+++++.+=.+...
T Consensus 145 ~Wk~LH~l-~Y~a~~L~~~H~~~~~ 168 (205)
T PRK05419 145 RWQKLHRL-VYLIAILAPLHYLWSV 168 (205)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 58999998 5566667777765544
No 70
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=57.27 E-value=55 Score=31.45 Aligned_cols=99 Identities=13% Similarity=0.153 Sum_probs=59.0
Q ss_pred ccccchhhHHHHHHHHHHh-hhhe-ec------cCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccccCC--Ccccch
Q 047145 262 LKTHRTLGIVIFCLGTLQA-FALL-LR------PKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNILKP--DNKWKQ 331 (383)
Q Consensus 262 ~~~H~~lG~~~~~l~~~Q~-l~~~-~r------p~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~--~~~~~~ 331 (383)
-..|..+|++.-++..+-. +..+ +| ++.+.+.+.+=+..-++...++.+.|.+.++..++.... +....+
T Consensus 43 ig~rg~vGI~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~~IDVDR~yl~~~pii 122 (296)
T PF10361_consen 43 IGTRGSVGIAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFMSIDVDRYYLQGLPII 122 (296)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhheeeeecHHhcccccHH
Confidence 3689999998887766654 3222 22 222222334445567788899999999999998887531 222222
Q ss_pred --hHHHHHHHHHHHHHHHHHH-HhhHhhhccc
Q 047145 332 --AYTGCIIVLVCVAVVLEIF-TWALVIKRKK 360 (383)
Q Consensus 332 --~~~~~~~~~~~~~v~lei~-~w~~~~~~~~ 360 (383)
.+..++...+.+.++-|.. -|--+..|+.
T Consensus 123 l~sfF~~l~~~~~lA~vWE~VRhWGSw~ERQ~ 154 (296)
T PF10361_consen 123 LQSFFWYLMQPGTLAAVWEAVRHWGSWQERQF 154 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhhhcc
Confidence 3334455555666667744 4665555544
No 71
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=57.20 E-value=1.5e+02 Score=31.59 Aligned_cols=62 Identities=13% Similarity=-0.106 Sum_probs=40.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhh
Q 047145 190 LRKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIK 252 (383)
Q Consensus 190 ~~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~ 252 (383)
+.....|.-+..++...+.-...+...++-.-+ .+..|-++=+..-.+++++..+|+++|-.
T Consensus 114 ~~~l~iH~p~~~lgya~~~v~f~~a~~~L~~~~-~~~~~~~~~~~~~~~g~~flt~Gi~~G~~ 175 (576)
T TIGR00353 114 DPGLIFHPPLLYMGYVGFSVAFAFALASLLRGE-LDSACARICRPWTLAAWSFLTLGIVLGSW 175 (576)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999998666544444434432110 12345555556677889999999999854
No 72
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=54.78 E-value=95 Score=24.48 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHcccccCC--CcccchhHHHHHHHHHHHHHHHHHH---HhhHhhhc
Q 047145 302 HSVGYATIILSIINIYRGFNILKP--DNKWKQAYTGCIIVLVCVAVVLEIF---TWALVIKR 358 (383)
Q Consensus 302 ~~~G~~~~~lg~~~i~~Gl~~~~~--~~~~~~~~~~~~~~~~~~~v~lei~---~w~~~~~~ 358 (383)
.+.|.++++++++=.+.=+.-... +..|+.+-+ +++++++.+.+.+. .|-+.|+-
T Consensus 15 li~GiiLL~~aCIfAfidfsK~~~~~~~~wRalSi--i~FI~giil~lG~~i~s~ygr~C~~ 74 (92)
T PF05767_consen 15 LIGGIILLIAACIFAFIDFSKNTKPTDYTWRALSI--ICFILGIILTLGIVIFSMYGRYCRP 74 (92)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 456777777666655544433321 234664332 34444444444322 46566653
No 73
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=54.17 E-value=1.4e+02 Score=25.39 Aligned_cols=45 Identities=31% Similarity=0.402 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHh
Q 047145 194 NIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWA 248 (383)
Q Consensus 194 ~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~ 248 (383)
.+...++.++..+++ .|...+|--| ...|+-+|+.++++..+-++
T Consensus 6 ~l~a~~~~~s~~ll~-~g~~~Ir~~~---------~~~Hr~~Ml~a~~ls~lFlv 50 (133)
T PF04238_consen 6 DLNAVLNAISAVLLL-IGWYFIRRGR---------IKLHRKLMLTAFVLSALFLV 50 (133)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhCC---------HHHHHHHHHHHHHHHHHHHH
Confidence 456677777766665 6766665321 25899999988877754333
No 74
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.69 E-value=29 Score=33.46 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=37.6
Q ss_pred hhhHHHHHH-HHHHhhhhe-----eccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccccCC
Q 047145 267 TLGIVIFCL-GTLQAFALL-----LRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNILKP 325 (383)
Q Consensus 267 ~lG~~~~~l-~~~Q~l~~~-----~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~ 325 (383)
-+|++++.| .+.|.+-.+ +--.+..+.+..|+-.-...-..++++++.+++.|+.-..+
T Consensus 217 rlgLvLl~LhYftellfHi~rlfyf~dek~~k~fslwa~vF~l~Rl~tliiaVlt~gfgla~~en 281 (374)
T KOG1608|consen 217 RLGLVLLTLHYFTELLFHIARLFYFSDEKYQKLFSLWAAVFVLGRLGTLIIAVLTVGFGLAGAEN 281 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 367777665 333544222 22334456677888666655567889999999999876643
No 75
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=53.09 E-value=1.7e+02 Score=26.28 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhhe-eccCCCCCcceeeeehhHHHHHHHHHHHHHH
Q 047145 237 LSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALL-LRPKPDHKYRIYWNFYHHSVGYATIILSIIN 315 (383)
Q Consensus 237 ~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~-~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~ 315 (383)
..+++..++|.+.++..... ....=..+++...+-.++|.+.++ .|+.+ +. .-.++.|++.
T Consensus 80 l~Gil~i~~gil~~~~~~~~----~~~l~~lia~~~i~~GI~ri~~~~~~~~~~-G~-------------~w~ii~Gvl~ 141 (185)
T COG3247 80 LSGILSILLGILAGFNPGLG----ALVLTYLIAIWFIASGILRIVVAFRLRSLP-GW-------------WWMIISGVLG 141 (185)
T ss_pred HHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHccccC-Cc-------------HHHHHHHHHH
Confidence 34444444455544433210 012334555555555666655444 45444 21 1245577777
Q ss_pred HHHcccccCCC
Q 047145 316 IYRGFNILKPD 326 (383)
Q Consensus 316 i~~Gl~~~~~~ 326 (383)
+..|+.+...|
T Consensus 142 ii~g~ill~~P 152 (185)
T COG3247 142 IIAGLILLFNP 152 (185)
T ss_pred HHHHHHHHHcc
Confidence 77777776554
No 76
>COG2717 Predicted membrane protein [Function unknown]
Probab=50.80 E-value=16 Score=33.43 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=31.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhh
Q 047145 191 RKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVS 234 (383)
Q Consensus 191 ~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~ 234 (383)
.....-..+-++||.+++|+++-.-+..+.- -++.|.++|+.
T Consensus 111 ~~~rpyitiG~iaflll~pLalTS~k~~~rr--lG~rW~~LHrL 152 (209)
T COG2717 111 LLKRPYITIGMIAFLLLIPLALTSFKWVRRR--LGKRWKKLHRL 152 (209)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHH
Confidence 4445566777899999999999888776653 23789999976
No 77
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=49.23 E-value=54 Score=26.69 Aligned_cols=32 Identities=22% Similarity=0.097 Sum_probs=25.3
Q ss_pred eeeeehhHHHHHHHHHHHHHHHHHcccccCCC
Q 047145 295 IYWNFYHHSVGYATIILSIINIYRGFNILKPD 326 (383)
Q Consensus 295 ~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~~ 326 (383)
...|..|++.-+.+.+..++.+.....+...+
T Consensus 25 ~~vn~~h~~~e~~i~i~~ii~~~~~~~~~~~~ 56 (110)
T PF13789_consen 25 KHVNKLHKKGEWIIFIIFIILIFIFLFIFIFR 56 (110)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 56788999999999999999887666655443
No 78
>COG4329 Predicted membrane protein [Function unknown]
Probab=48.15 E-value=35 Score=28.84 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhh
Q 047145 236 QLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAF 281 (383)
Q Consensus 236 q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l 281 (383)
+....++++.|+.+-...+.+ +.+..+.|.+.|-.++....+|..
T Consensus 65 Ha~~wv~tv~Gl~~lwr~grr-~~~~wSa~~~~G~ll~GaGlFnl~ 109 (160)
T COG4329 65 HAFSWVATVGGLFMLWRLGRR-KTFQWSAKYWWGGLLLGAGLFNLY 109 (160)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-Ccceeehhhhhhhhhhcccchhee
Confidence 444566666665554444433 234456666666666666555554
No 79
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=47.56 E-value=2.2e+02 Score=25.80 Aligned_cols=74 Identities=19% Similarity=0.305 Sum_probs=38.2
Q ss_pred CCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHh-hhh------eeccCCCCCcc-e
Q 047145 224 AGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQA-FAL------LLRPKPDHKYR-I 295 (383)
Q Consensus 224 ~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~-l~~------~~rp~~~~~~r-~ 295 (383)
.+|+|..+--.+-+++++..+-|+-. +. ..--+..|++++++..+-- +.- +.|+..+...| .
T Consensus 91 tdp~lm~lDssLl~lg~~aLlsgita-ff---------~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~ 160 (226)
T COG4858 91 TDPWLMWLDSSLLFLGAMALLSGITA-FF---------QKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPG 160 (226)
T ss_pred CCceEEEecccHHHHHHHHHHHHHHH-HH---------hcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCc
Confidence 46777777777666666555444331 11 1124567777776544321 111 12555544434 5
Q ss_pred eeeehhHHHHHH
Q 047145 296 YWNFYHHSVGYA 307 (383)
Q Consensus 296 ~~~~~H~~~G~~ 307 (383)
.|+.+-...+-.
T Consensus 161 ~~K~~lv~~~sm 172 (226)
T COG4858 161 TWKYLLVAVLSM 172 (226)
T ss_pred hHHHHHHHHHHH
Confidence 566655555444
No 80
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=46.99 E-value=10 Score=38.35 Aligned_cols=111 Identities=19% Similarity=0.186 Sum_probs=60.0
Q ss_pred hhhhhhhHHHHHHHH--HHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCCCc----cccc
Q 047145 191 RKRNIHGVLNAVSWG--LLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESVGV----VLKT 264 (383)
Q Consensus 191 ~~~~~Hg~lm~~aw~--~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~----~~~~ 264 (383)
....+|-.++...+. ++-|++. ++|=.|.- +..+.|=+.|...--...++.++-...++.+.+....+ .-..
T Consensus 279 ~~~~~h~~~G~~~~~l~~lQ~~~~-l~Rp~~~~-k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~ 356 (403)
T KOG4293|consen 279 TVYSAHTDLGIILLVLAFLQPLAL-LLRPLPES-KIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGSI 356 (403)
T ss_pred eeeeecccchhHHHHHHHHHHHHH-HhcCCccc-CceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeeeE
Confidence 445677777776665 4444443 33422221 12344545666554444444444444444333221111 1257
Q ss_pred cchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHH
Q 047145 265 HRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHS 303 (383)
Q Consensus 265 H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~ 303 (383)
|..+|.+..++-.+|.....-|+++....|...++.|+-
T Consensus 357 ~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (403)
T KOG4293|consen 357 LAVLGLIAVILEILSWRITIERPSPSSMSRTSTNAPSRG 395 (403)
T ss_pred EEEechhhhhhhhheeeeeecccCcccccccccCccccc
Confidence 778888777777777776666777766666666666653
No 81
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=45.98 E-value=23 Score=27.69 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=11.0
Q ss_pred HHHHHhhHhhhcccCCCC
Q 047145 347 LEIFTWALVIKRKKSGSG 364 (383)
Q Consensus 347 lei~~w~~~~~~~~~~~~ 364 (383)
+-|..|+..|++||+.|.
T Consensus 46 l~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 46 LLVILWFVCCKKRKRSRR 63 (94)
T ss_pred HHHHHHHHHHHHhhhccC
Confidence 345567777776665543
No 82
>PRK09292 Na(+)-translocating NADH-quinone reductase subunit D; Validated
Probab=45.70 E-value=1.6e+02 Score=27.11 Aligned_cols=110 Identities=6% Similarity=0.085 Sum_probs=58.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHH
Q 047145 194 NIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIF 273 (383)
Q Consensus 194 ~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~ 273 (383)
...++-|.+|..+.+-.+..+....|++ +.--+++..+++.++.++..+-+.-+ .+....|+.+|+.+=
T Consensus 38 ~~nalgmGlA~t~Vl~~S~~~~sllr~~---------i~~~lRiiv~I~vIA~~V~~ve~~l~--a~~p~Ly~~LGiflp 106 (209)
T PRK09292 38 LETALVMTLAVTFVTAFSNFFISLIRNH---------IPNSVRIIVQMTIIASLVIVVDQVLK--AYAYDISKQLSVFVG 106 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhh
Confidence 4567888888888888888877777663 22355666677666666655432211 122346666666544
Q ss_pred HH----HHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHH
Q 047145 274 CL----GTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINI 316 (383)
Q Consensus 274 ~l----~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i 316 (383)
.+ +++-....+.. +.+..+....-+=.-+|+.+.++-+..+
T Consensus 107 LIvtNC~VLGrae~~a~--~~~~~~s~~dglg~GlGftlaL~lla~i 151 (209)
T PRK09292 107 LIITNCIVMGRAEAFAM--KNPPIPSFLDGIGNGLGYGAILLIVAFF 151 (209)
T ss_pred HHHHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22222111222 2222333333344456766655555444
No 83
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=43.41 E-value=2.5e+02 Score=28.30 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.7
Q ss_pred cccccchhhHHHHHHHHHHhhh
Q 047145 261 VLKTHRTLGIVIFCLGTLQAFA 282 (383)
Q Consensus 261 ~~~~H~~lG~~~~~l~~~Q~l~ 282 (383)
.+..|.+.|+.+++|.++-.+.
T Consensus 75 ~Y~~HK~~sIlailL~l~H~~~ 96 (438)
T COG4097 75 IYRFHKYTSILAILLLLAHNFI 96 (438)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999988753
No 84
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=42.97 E-value=1.2e+02 Score=31.14 Aligned_cols=26 Identities=12% Similarity=-0.247 Sum_probs=10.9
Q ss_pred cceeeeehhHHHHHHHHHHHHHHHHH
Q 047145 293 YRIYWNFYHHSVGYATIILSIINIYR 318 (383)
Q Consensus 293 ~r~~~~~~H~~~G~~~~~lg~~~i~~ 318 (383)
.|++.-+.+++.++.+-+++++-+..
T Consensus 390 ~rpf~~p~g~~g~~~~~~~~~~~~~~ 415 (474)
T TIGR03813 390 PRPYRIPGGLAGMWFIGGLGFVGSAL 415 (474)
T ss_pred CCCeEecCCccchhHHHHHHHHHHHH
Confidence 34444444544334444444433333
No 85
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=42.57 E-value=30 Score=28.60 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 047145 196 HGVLNAVSWGLLMPIGVIIARY 217 (383)
Q Consensus 196 Hg~lm~~aw~~l~P~gil~aR~ 217 (383)
--.+|+++|+++-|+|..+.-|
T Consensus 11 ~Ia~mVlGFi~fWPlGla~Lay 32 (115)
T PF11014_consen 11 WIAAMVLGFIVFWPLGLALLAY 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999977654
No 86
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=42.08 E-value=84 Score=26.02 Aligned_cols=51 Identities=4% Similarity=0.047 Sum_probs=31.2
Q ss_pred eehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhh
Q 047145 230 YLHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFAL 283 (383)
Q Consensus 230 ~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~ 283 (383)
.+|..++.++.++++++++.++......+ .-.|-.++.++++..+.-.+..
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~p---~p~~iffavcI~l~~~s~~lLI 79 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDPP---KPLHIFFAVCILLICISAILLI 79 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCCC---CceEEehHHHHHHHHHHHHhhe
Confidence 57777777777777777777666553321 2356666666666555554433
No 87
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=41.96 E-value=2e+02 Score=25.75 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=44.1
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhc
Q 047145 188 SKLRKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLG 254 (383)
Q Consensus 188 ~~~~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~ 254 (383)
+..+.+..|.-.+.++.+.+.-.++....|+.. +++.+-.+-..+-.+|+++..+|++.|-.-.
T Consensus 8 ~~~ri~yiHVp~a~~~~~~~~~~~~~s~~yL~~---~~~~~D~la~~~a~iGf~f~tl~LitGaiWa 71 (184)
T TIGR01191 8 ASVRIMYVHVPAAWMAIGVYIMMAIASFIFLVW---KHPLSDLAAKAAAPIGAVFTLIALVTGSLWG 71 (184)
T ss_pred cceeehhhHHHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999998887777777777654 2333333334444577888888888875533
No 88
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=41.93 E-value=67 Score=30.93 Aligned_cols=42 Identities=31% Similarity=0.488 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHcccccC-CCcccchhHHHHHHHHHHHH
Q 047145 303 SVGYATIILSIINIYRGFNILK-PDNKWKQAYTGCIIVLVCVA 344 (383)
Q Consensus 303 ~~G~~~~~lg~~~i~~Gl~~~~-~~~~~~~~~~~~~~~~~~~~ 344 (383)
.+-.+.+.+.+++.+.|+.... +...|..+|.+++++.+++.
T Consensus 263 vvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~ 305 (318)
T TIGR00383 263 VVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIA 305 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHH
Confidence 4455555666777778887653 44457767665555444433
No 89
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=41.17 E-value=32 Score=20.77 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=12.0
Q ss_pred eehhHHHHHHHHHHHHHHHHHcc
Q 047145 298 NFYHHSVGYATIILSIINIYRGF 320 (383)
Q Consensus 298 ~~~H~~~G~~~~~lg~~~i~~Gl 320 (383)
+..|+|++-+.-++=++-+.+|+
T Consensus 2 ~~LH~w~~~i~al~~lv~~iTGl 24 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAITGL 24 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566555555555455444444
No 90
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=40.83 E-value=4.8e+02 Score=27.84 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=39.5
Q ss_pred chhhhhhhHHHHHHHH-HHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhh
Q 047145 190 LRKRNIHGVLNAVSWG-LLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIK 252 (383)
Q Consensus 190 ~~~~~~Hg~lm~~aw~-~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~ 252 (383)
+.....|..++.++.. +.+|.+.-++-.++.- ....|-++=+....+++++..+|+++|-.
T Consensus 168 ~~wl~iHpp~l~lgYa~~~v~fa~a~~~Ll~~~--~~~~~~~~~~~~~~~gw~fLT~GI~lG~~ 229 (571)
T PRK10369 168 HPGLIFHPPLLYLGYGGLMVAASVALASLLRGE--FDAACARICWRWALPGWSALTAGIILGSW 229 (571)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998 5556665554433321 01233333344566789999999999854
No 91
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=40.10 E-value=1.2e+02 Score=28.40 Aligned_cols=42 Identities=17% Similarity=0.035 Sum_probs=25.4
Q ss_pred hheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccccCC
Q 047145 282 ALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNILKP 325 (383)
Q Consensus 282 ~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~ 325 (383)
.++..|-+-.+.+. .+++...+...++.+......|+...++
T Consensus 88 iaV~~P~~Y~~~~~--~~y~~~~~~~~~~~s~~~~~~~~~~~~~ 129 (257)
T PF10320_consen 88 IAVCFPLRYRTIST--RKYLIILLIFPVIYSIFFTVIGFLYRDD 129 (257)
T ss_pred eeEeehhhhhhccc--ccchhhHhHHHHHHHHHHHhheeEecCC
Confidence 34445655433222 2266667777778888888888876654
No 92
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=38.33 E-value=8.4 Score=36.80 Aligned_cols=18 Identities=39% Similarity=0.504 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHhhhh
Q 047145 266 RTLGIVIFCLGTLQAFAL 283 (383)
Q Consensus 266 ~~lG~~~~~l~~~Q~l~~ 283 (383)
-.+|++++++.++-+++.
T Consensus 105 LF~Gi~~l~l~~lLaL~v 122 (381)
T PF05297_consen 105 LFVGIVILFLCCLLALGV 122 (381)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346777777666655543
No 93
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=37.88 E-value=2.3e+02 Score=23.31 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=36.9
Q ss_pred ehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhh---heeccCCCCCcceeeeehhHHHHHH
Q 047145 231 LHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFA---LLLRPKPDHKYRIYWNFYHHSVGYA 307 (383)
Q Consensus 231 ~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~---~~~rp~~~~~~r~~~~~~H~~~G~~ 307 (383)
-|..--++.++++++.|.+.. .+ .+ +.+..+ ++++.++++|++. -|++-+.++ -..|+..+-+++.+
T Consensus 19 ~y~iGFvLsIiLT~ipF~~vm--~~---~~--~~~~~~-~~i~~lA~iQi~vqLvyFlHM~~~~--eg~w~~~~~iFt~~ 88 (111)
T COG3125 19 SYLIGFVLSIILTLIPFWVVM--TG---AL--SSTVTL-IIILGLAVIQILVHLVYFLHMNTKS--EGRWNMGALIFTIF 88 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hc---cc--chhhHH-HHHHHHHHHHHHHHHHHHhcccCCc--ccceehHHHHHHHH
Confidence 344444445555555554332 21 22 233333 4556688889742 223322222 12377777777776
Q ss_pred HHHHHHHH
Q 047145 308 TIILSIIN 315 (383)
Q Consensus 308 ~~~lg~~~ 315 (383)
+.++-++.
T Consensus 89 i~vivvvG 96 (111)
T COG3125 89 IIVIVVVG 96 (111)
T ss_pred HHHHHHHH
Confidence 66555443
No 94
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=37.80 E-value=24 Score=28.35 Aligned_cols=31 Identities=10% Similarity=0.310 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhHhhhccc
Q 047145 330 KQAYTGCIIVLVCVAVVLEIFTWALVIKRKK 360 (383)
Q Consensus 330 ~~~~~~~~~~~~~~~v~lei~~w~~~~~~~~ 360 (383)
.+..++++++++++.++..|+-....|.|++
T Consensus 62 ~iili~lls~v~IlVily~IyYFVILRer~~ 92 (101)
T PF06024_consen 62 NIILISLLSFVCILVILYAIYYFVILRERQK 92 (101)
T ss_pred cchHHHHHHHHHHHHHHhhheEEEEEecccc
Confidence 3344444554444444444444444454444
No 95
>TIGR01939 nqrD NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit. This model represents the NqrD subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=37.28 E-value=2.4e+02 Score=25.81 Aligned_cols=109 Identities=8% Similarity=0.087 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHH
Q 047145 196 HGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCL 275 (383)
Q Consensus 196 Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l 275 (383)
-++-|.+|..+.+-..-++....|++ +..-+++..+++.++.++..+.+.-+ .+..+.|+.+|+.+=.+
T Consensus 39 nalgmGlA~tfVl~~s~~~~s~lr~~---------ip~~lRi~v~I~vIA~~V~~vem~l~--a~~p~Ly~~LGiflpLI 107 (207)
T TIGR01939 39 TAIVMAIAVTFVTGFSNFFVSLLRNT---------IPNSIRMIVQLVIIASLVIVVDQVLK--AFAYDISKQLSVFVGLI 107 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHhhhhHH
Confidence 45677788877777777777666653 23456677777777777765432211 12234677777655443
Q ss_pred HHHH-hh-hhe-eccCCCCCcceeeeehhHHHHHHHHHHHHHHH
Q 047145 276 GTLQ-AF-ALL-LRPKPDHKYRIYWNFYHHSVGYATIILSIINI 316 (383)
Q Consensus 276 ~~~Q-~l-~~~-~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i 316 (383)
..+ .+ +-. ..-.+.+..+....-+=.-+|+.+.++.+..+
T Consensus 108 -vtNCiVLGrae~~a~~~~~~~S~~dGlg~GlGftlaL~lla~i 150 (207)
T TIGR01939 108 -ITNCIVMGRAEAFAMANPPIPSFLDGIGNGLGYGWVLVIIGFF 150 (207)
T ss_pred -HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22 111 11122232333444444455666555554444
No 96
>PRK10263 DNA translocase FtsK; Provisional
Probab=37.05 E-value=2.9e+02 Score=32.46 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee
Q 047145 194 NIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWF 229 (383)
Q Consensus 194 ~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf 229 (383)
..|..|.=+.+++|+-+++++.--+-.+-..++.|.
T Consensus 17 ~~~rrL~E~~gIlLlllAlfL~lALiSYsPsDPSwS 52 (1355)
T PRK10263 17 SSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWS 52 (1355)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCccCCccc
Confidence 344455555555555555544422223321344554
No 97
>PRK03735 cytochrome b6; Provisional
Probab=36.80 E-value=1.4e+02 Score=27.72 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=69.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCCC-ccccccchhhH
Q 047145 192 KRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESVG-VVLKTHRTLGI 270 (383)
Q Consensus 192 ~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~-~~~~~H~~lG~ 270 (383)
....=|.+..+++.+.+-.|++.+-|+.+-. ...| .. +.-+ ..+-..| ...+.|.+=.-
T Consensus 40 ~~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~--~~A~----------~S-------v~~I-~~ev~~GwliR~~H~~gas 99 (223)
T PRK03735 40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDI--KNAY----------ES-------VYYL-QNEVAFGWIVRGMHHWGAS 99 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hhHH----------HH-------HHHH-HcccccHHHHHHHHhhhhH
Confidence 4455689999999999999999998876531 1110 00 0001 1111112 23468888888
Q ss_pred HHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccccCCC
Q 047145 271 VIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNILKPD 326 (383)
Q Consensus 271 ~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~~ 326 (383)
+.++++.++.+-+++.-.-+.+ | ..-++.|.+++++.+...++|..+..+.
T Consensus 100 ~~~~~~~lH~~r~~~~gsYk~p-r----e~~W~~Gv~l~~l~~~~af~GY~Lpw~q 150 (223)
T PRK03735 100 LVIVMMFLHTLRVFFTGGYKKP-R----ELNWVVGVLIFFVTVGLGFTGYLLPWDQ 150 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-C----CceeHHHHHHHHHHHHHHhccccCCccc
Confidence 8888888888755532111111 1 1236899999999999999999886543
No 98
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=36.59 E-value=3e+02 Score=29.73 Aligned_cols=61 Identities=11% Similarity=0.009 Sum_probs=40.1
Q ss_pred chhhhhhhHHHHHHHH-HHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhh
Q 047145 190 LRKRNIHGVLNAVSWG-LLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIK 252 (383)
Q Consensus 190 ~~~~~~Hg~lm~~aw~-~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~ 252 (383)
+..+..|.-+..++.+ +.+|.+.-++-.++.- .+..|-++=+....+++++..+|+++|-.
T Consensus 166 ~~~l~iHpp~l~lgya~~~v~f~~a~~~L~~~~--~~~~~~~~~~~~~~~g~~~LT~GI~~G~~ 227 (628)
T TIGR03145 166 DIGLIFHPPLLYLGYVGFAVNFAMALAALISGH--LDAAVARWSRPWVLLSWVFLTGGIMLGSW 227 (628)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999996 4555554444333321 11235445556677889999999999854
No 99
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=36.30 E-value=2e+02 Score=29.09 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=37.0
Q ss_pred cccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccccC
Q 047145 263 KTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNILK 324 (383)
Q Consensus 263 ~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~ 324 (383)
..|-.++++++.+++...+..+.+..+....++. ..--+.+.++++++-.+++.+|-...+
T Consensus 219 a~Hll~al~i~~~l~~~~~~l~~~~~~~~~~~~~-~~~lr~l~~~~~~l~~lqI~lGa~Vag 279 (403)
T PTZ00127 219 AAHLFNAFVIYSLLLWNGLTLILFALPSIAPFPE-LLKMRLLARGLFALVFLTAMSGAFVAG 279 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6899999999988888776443221111110111 111356677777788888888875543
No 100
>CHL00070 petB cytochrome b6
Probab=35.90 E-value=3.4e+02 Score=25.02 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=69.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccC-CCc-cccccchh
Q 047145 191 RKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSES-VGV-VLKTHRTL 268 (383)
Q Consensus 191 ~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~-~~~-~~~~H~~l 268 (383)
+....=|.+..+++.+.+-.|++.+-|+.+.. ... +--......+. -|+ ..+.|.+-
T Consensus 31 ~~~~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~--~~A-------------------f~Sv~~I~~ev~~Gwl~R~~H~~g 89 (215)
T CHL00070 31 NIFYCLGGITLTCFLVQVATGFAMTFYYRPTV--TEA-------------------FASVQYIMTEVNFGWLIRSVHRWS 89 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HHH-------------------HHHHHHHHcccccHHHHHHHHHHH
Confidence 44556688888999999999999998776531 000 01000111111 122 34688888
Q ss_pred hHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccccCCC
Q 047145 269 GIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNILKPD 326 (383)
Q Consensus 269 G~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~~ 326 (383)
.-+.++++.+.++-+++.-.-+.+ | ..-+..|.+++++.++..++|..+..+.
T Consensus 90 as~~~~~~~lH~~r~~~~gsYk~p-r----e~~W~~Gv~l~~l~m~~af~GY~Lpw~q 142 (215)
T CHL00070 90 ASMMVLMMILHVFRVYLTGGFKKP-R----ELTWVTGVVLAVLTVSFGVTGYSLPWDQ 142 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCC-c----ccCcHHHHHHHHHHHHHHHccccCCcch
Confidence 888888888888755542111111 1 1346899999999999999999886543
No 101
>PRK09546 zntB zinc transporter; Reviewed
Probab=35.74 E-value=96 Score=30.13 Aligned_cols=38 Identities=11% Similarity=0.226 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHcccccC-CCcccchhHHHHHHH
Q 047145 302 HSVGYATIILSIINIYRGFNILK-PDNKWKQAYTGCIIV 339 (383)
Q Consensus 302 ~~~G~~~~~lg~~~i~~Gl~~~~-~~~~~~~~~~~~~~~ 339 (383)
.++..+.+.+.+++.+.|+...+ +...|..+|.+++++
T Consensus 268 tilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~i 306 (324)
T PRK09546 268 SLMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLL 306 (324)
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHH
Confidence 35556666778888889998764 444566666544433
No 102
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.57 E-value=3.4e+02 Score=26.98 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=41.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhh
Q 047145 194 NIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGI 251 (383)
Q Consensus 194 ~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~ 251 (383)
.-+..++-+||=+++-+|+..+.+.+. .+.++..|..+..++++..+.++....
T Consensus 186 ~~~w~FNP~aWQllFv~G~~~g~~~~~----~~~~~~~~~~l~~la~~~~l~~~~~~~ 239 (358)
T PF10129_consen 186 GGGWFFNPFAWQLLFVLGLWLGWGWRR----GRRFLPRRRWLVWLAVAYVLFAFFWRL 239 (358)
T ss_pred ccccccChHHHHHHHHHHHHHhccccc----cccccccchHHHHHHHHHHHHHHHHHH
Confidence 347788999999999999999876554 234567888888888777766666544
No 103
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=35.49 E-value=1.7e+02 Score=26.19 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhhheecc-CCCC-CcceeeeehhHHHHHHHHHHHHHHHHHcccccCCC-----cccch--hHHHHHHHH
Q 047145 270 IVIFCLGTLQAFALLLRP-KPDH-KYRIYWNFYHHSVGYATIILSIINIYRGFNILKPD-----NKWKQ--AYTGCIIVL 340 (383)
Q Consensus 270 ~~~~~l~~~Q~l~~~~rp-~~~~-~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~~-----~~~~~--~~~~~~~~~ 340 (383)
+.+.++++.|...+.++. .+++ ..+.....+|+.+|..+++|.+.=++..+.-..++ ..|.. +-.+-.+ +
T Consensus 17 Wl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p~~~~~~~~~~~~aA~~~Hl~-L 95 (181)
T COG3038 17 WLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPAPPIVPGPPPWQRKAAKLGHLA-L 95 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHHHHHHHH-H
Confidence 445555556665554432 1222 24556778999999999999999999888765431 23332 2222222 2
Q ss_pred HHHHHHHHHHHhhHhh
Q 047145 341 VCVAVVLEIFTWALVI 356 (383)
Q Consensus 341 ~~~~v~lei~~w~~~~ 356 (383)
.+..+++.+..|....
T Consensus 96 Y~l~lalPlsG~l~~~ 111 (181)
T COG3038 96 YLLMLALPLSGYLLST 111 (181)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 2334455666666443
No 104
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=34.96 E-value=74 Score=31.01 Aligned_cols=42 Identities=21% Similarity=0.417 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHcccccC-CCcccchhHHHHHHHHHHHH
Q 047145 303 SVGYATIILSIINIYRGFNILK-PDNKWKQAYTGCIIVLVCVA 344 (383)
Q Consensus 303 ~~G~~~~~lg~~~i~~Gl~~~~-~~~~~~~~~~~~~~~~~~~~ 344 (383)
.+..+.+...+++.+.|+.... +...|..+|.+++++.++++
T Consensus 267 i~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~ 309 (322)
T COG0598 267 IVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLA 309 (322)
T ss_pred HHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHH
Confidence 4555555566777777777765 44567766665554444433
No 105
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=34.95 E-value=2.9e+02 Score=28.30 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=13.8
Q ss_pred eeehhHHHHHHHHHHHHHHH
Q 047145 297 WNFYHHSVGYATIILSIINI 316 (383)
Q Consensus 297 ~~~~H~~~G~~~~~lg~~~i 316 (383)
-++.|..+|..+-+-+....
T Consensus 116 ~~~~H~~~~~~vaig~~~Sa 135 (436)
T PF01654_consen 116 SPKVHLFIGWLVAIGAWLSA 135 (436)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 45689999888776665443
No 106
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=34.84 E-value=5.3e+02 Score=27.14 Aligned_cols=156 Identities=14% Similarity=0.024 Sum_probs=76.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhc-----ccCCCccccc----
Q 047145 194 NIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLG-----SESVGVVLKT---- 264 (383)
Q Consensus 194 ~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~-----~~~~~~~~~~---- 264 (383)
..|-++-.+.=++-+=++++=.||.|. +++.|.++-+...-+-.+...+|++-|+.+. +++ ++..-.
T Consensus 17 ~fH~lFvpltiGL~~llai~E~~~~rt---g~~~y~~larFW~Klf~InFavGVvTGivmeFqFG~nWs-~ys~~vGdif 92 (522)
T PRK15097 17 MYHFLFVPLTLGMAFLLAIMETVYVLS---GKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWS-YYSHYVGDIF 92 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHhhcchheeecccccH-HHHHHHHHHH
Confidence 456666555555555556666677776 5677766655555444444445666665543 232 111111
Q ss_pred cchhhHHHHHHHHHHh-hhhe-eccCCCCCcceeeeehhHHHHHHHHHHHHHHHH------------HcccccC-C----
Q 047145 265 HRTLGIVIFCLGTLQA-FALL-LRPKPDHKYRIYWNFYHHSVGYATIILSIINIY------------RGFNILK-P---- 325 (383)
Q Consensus 265 H~~lG~~~~~l~~~Q~-l~~~-~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~------------~Gl~~~~-~---- 325 (383)
=..+++=.+...+++. +.++ +.- ++++-++.|......+.+-+.+..+ .|+++.. .
T Consensus 93 G~pLa~E~l~AFFlEstFlGl~~FG-----W~rl~~~~H~~~~~lVaiGt~lSA~wIl~ANsWMQtP~G~~~~~~~gr~~ 167 (522)
T PRK15097 93 GAPLAIEGLMAFFLESTFVGLFFFG-----WDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRME 167 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh-----hhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEecCCCeEE
Confidence 1222233333444553 3333 221 1223356787776665544433332 3422210 0
Q ss_pred ----------Ccc-cchhHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 047145 326 ----------DNK-WKQAYTGCIIVLVCVAVVLEIFTWALVIKR 358 (383)
Q Consensus 326 ----------~~~-~~~~~~~~~~~~~~~~v~lei~~w~~~~~~ 358 (383)
+.. +...=.+..+.+...++++.+..|+..|+|
T Consensus 168 ~~d~~a~~~NP~~~~~f~H~~~aa~~tg~f~v~gvsA~~llr~r 211 (522)
T PRK15097 168 MVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAYYMLKGR 211 (522)
T ss_pred eCCHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 011 111223345556667778888899877654
No 107
>PF14927 Neurensin: Neurensin
Probab=33.87 E-value=2.2e+02 Score=24.48 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHccccc
Q 047145 300 YHHSVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 300 ~H~~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
+=..+|.+++++|++.+.+|+...
T Consensus 46 V~~i~g~l~Ll~Gi~~l~vgY~vP 69 (140)
T PF14927_consen 46 VGFISGLLLLLLGIVALTVGYLVP 69 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccC
Confidence 456889999999999999999775
No 108
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=33.83 E-value=66 Score=22.01 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=6.8
Q ss_pred HHHHHHHhhHhhhc
Q 047145 345 VVLEIFTWALVIKR 358 (383)
Q Consensus 345 v~lei~~w~~~~~~ 358 (383)
+.+.+..|..++||
T Consensus 21 ~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 21 FFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHcccc
Confidence 33445556554443
No 109
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.81 E-value=6e+02 Score=27.05 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHH----HHHHHHHhhhhcccCCCceeeeh
Q 047145 197 GVLNAVSWGLLMP----IGVIIARYLKVFKSAGPAWFYLH 232 (383)
Q Consensus 197 g~lm~~aw~~l~P----~gil~aR~~k~~~~~~~~Wf~~H 232 (383)
|.||..+..+.+- .|-..+|.+|.+ .++.|.+.-
T Consensus 362 GsLmT~~~~l~v~~G~~agY~s~rlyk~~--~g~~wk~~~ 399 (628)
T KOG1278|consen 362 GSLMTAMVLLFVFMGFVAGYVSARLYKTF--KGREWKRNA 399 (628)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhhhhHhhh--cCCcchhhH
Confidence 4555555444433 445667999988 457776543
No 110
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=33.50 E-value=50 Score=29.09 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=8.4
Q ss_pred HHHHHhhHhhhcccCCCCCC
Q 047145 347 LEIFTWALVIKRKKSGSGDK 366 (383)
Q Consensus 347 lei~~w~~~~~~~~~~~~~~ 366 (383)
+-+..++ .+||.|++|++-
T Consensus 112 fvir~~R-~r~~~rktRkYg 130 (163)
T PF06679_consen 112 FVIRTFR-LRRRNRKTRKYG 130 (163)
T ss_pred HHHHHHh-hccccccceeec
Confidence 3333343 333334455655
No 111
>PF10242 L_HGMIC_fpl: Lipoma HMGIC fusion partner-like protein; InterPro: IPR019372 This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like. The proteins carry four highly conserved transmembrane domains. In certain instances, as in LHFPL5, mutations cause deafness in humans [] or hypospadias []. LHFPL1 is transcribed in six liver tumour cell lines [].
Probab=33.41 E-value=1.1e+02 Score=27.14 Aligned_cols=58 Identities=12% Similarity=-0.005 Sum_probs=39.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhh
Q 047145 192 KRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWAT 249 (383)
Q Consensus 192 ~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l 249 (383)
..++=.++|.++++++.-...+..-.+-.-.-.++..|++...+|.++.++.++|.++
T Consensus 69 ~Wkaa~~~~~~g~~Ll~~~~~~~L~~~c~~~~~~~sv~~i~g~~Q~~A~l~~~~g~~~ 126 (181)
T PF10242_consen 69 AWKAAAFFVGIGCVLLLLIALLSLFSCCFRSICSRSVFKICGWLQFVAGLCLLLGCLL 126 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEeeechHHHHHHHHHHHHhhee
Confidence 4678889999999886665554432221100124567899999999999888877663
No 112
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=33.04 E-value=1e+02 Score=29.69 Aligned_cols=87 Identities=13% Similarity=-0.064 Sum_probs=51.3
Q ss_pred eehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHH
Q 047145 230 YLHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATI 309 (383)
Q Consensus 230 ~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~ 309 (383)
+.|+.+-.+.-++.++.++..+...+. ...=.+....++++..+|.+.|...-...- ..+..--.|-.++.+++
T Consensus 69 ~~HR~~~~~~gl~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l-~~~~~~~~Hl~~a~~~~ 142 (302)
T PF02628_consen 69 WGHRLLAGLVGLLILALAVWAWRKRRI-----RRRLRWLALLALVLVILQGLLGAWTVLSGL-VSPYVVTLHLLLALLIF 142 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-----CcchHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHH
Confidence 588887666655555555554433322 122346777778889999754432211110 12344678999998888
Q ss_pred HHHHHHHHHcccc
Q 047145 310 ILSIINIYRGFNI 322 (383)
Q Consensus 310 ~lg~~~i~~Gl~~ 322 (383)
.+-......-...
T Consensus 143 ~~l~~~~~~~~~~ 155 (302)
T PF02628_consen 143 ALLVWLALRARRP 155 (302)
T ss_pred HHHHHHHHHhcCc
Confidence 8777766655544
No 113
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=32.92 E-value=2.4e+02 Score=22.41 Aligned_cols=70 Identities=10% Similarity=0.047 Sum_probs=36.6
Q ss_pred ehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhh---heeccCCCCCcceeeeehhHHHHHH
Q 047145 231 LHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFA---LLLRPKPDHKYRIYWNFYHHSVGYA 307 (383)
Q Consensus 231 ~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~---~~~rp~~~~~~r~~~~~~H~~~G~~ 307 (383)
-|..--+++++++++.|.+... +. + .-...-.++++++++|.+- .|++-+.++ +..||....+++.+
T Consensus 8 ~yviGFiLSiiLT~i~F~~v~~--~~---~---~~~~~~~~i~~lA~iQi~VqL~~FLHm~~~~--~~~~n~~~l~ft~~ 77 (94)
T TIGR02901 8 KHVNGFILSLLLTFLALWVALY--SD---L---PLAMGLTIIIIFAFIQAGLQLIMFMHAGESE--DGKVQIYNIYYSAF 77 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--cc---C---ChhHHHHHHHHHHHHHHHHHHHHheeecCCc--ccchHHHHHHHHHH
Confidence 3555556667777666665432 11 1 1222334566788889753 233433222 23477776666655
Q ss_pred HHH
Q 047145 308 TII 310 (383)
Q Consensus 308 ~~~ 310 (383)
+.+
T Consensus 78 i~~ 80 (94)
T TIGR02901 78 IAL 80 (94)
T ss_pred HHH
Confidence 443
No 114
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=32.77 E-value=1.3e+02 Score=27.20 Aligned_cols=127 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhh---------------hhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhh
Q 047145 189 KLRKRNIHGVLNAVSWGLLMPIGVIIARYL---------------KVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKL 253 (383)
Q Consensus 189 ~~~~~~~Hg~lm~~aw~~l~P~gil~aR~~---------------k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~ 253 (383)
.+..+.+|..+..++.+.+.=.++...-|+ +..| +.+..=++-.-.-.+++++..+|++.|..-
T Consensus 68 ~~~~l~iHv~~~~~~ya~~~ia~~~al~~l~~~~~Lk~~~~~~~~~~lp-~l~~le~~~~~~~~~gf~~lti~l~~G~~w 146 (214)
T PF01578_consen 68 QSPWLYIHVPLALLGYAAFAIAALAALLYLIQERRLKKKKFSRFYQRLP-SLETLERLSYRLILIGFILLTIGLITGAIW 146 (214)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc-hHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Q ss_pred cccCCCcccc--ccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHH---ccc
Q 047145 254 GSESVGVVLK--THRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYR---GFN 321 (383)
Q Consensus 254 ~~~~~~~~~~--~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~---Gl~ 321 (383)
.++.-+.... +=....+++.++...=...-..+ ..++++-.++. .+|.++++++..-+-+ |+|
T Consensus 147 a~~~wG~~w~wDpk~~~sli~Wl~y~~~lh~r~~~-~~~gr~~a~~~----i~gf~~~~~~~~gv~~~~~~lH 214 (214)
T PF01578_consen 147 AKDSWGSYWSWDPKEVWSLITWLVYGAYLHLRSWK-GWRGRRAAYLS----IIGFLLLLLSYFGVNLLLEGLH 214 (214)
T ss_pred HHHhccchhHHhHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHH----HHHHHHHHHHHHHHHHhcCcCC
No 115
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=32.69 E-value=2.4e+02 Score=28.74 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=14.9
Q ss_pred eccCCCCCcceeeeehhHHHHHHHHHHHHHHHHH
Q 047145 285 LRPKPDHKYRIYWNFYHHSVGYATIILSIINIYR 318 (383)
Q Consensus 285 ~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~ 318 (383)
+||..+.+ . +..+..+..+-++.....+.+
T Consensus 344 ~~Py~~~~--~--n~~~~~~~~~~~i~~~l~i~f 373 (438)
T PF06011_consen 344 LRPYMDKR--T--NVLNIILSVVRLITLFLLIAF 373 (438)
T ss_pred hChhcccc--c--cHHHHHHHHHHHHHHHHHHHH
Confidence 46655432 1 556665555555444444443
No 116
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=32.58 E-value=5.8e+02 Score=27.39 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHcccccCCC-cccchh
Q 047145 302 HSVGYATIILSIINIYRGFNILKPD-NKWKQA 332 (383)
Q Consensus 302 ~~~G~~~~~lg~~~i~~Gl~~~~~~-~~~~~~ 332 (383)
-|+|.++++.|++-..+|+...+.. ..|.-.
T Consensus 240 D~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa 271 (599)
T PF06609_consen 240 DWIGIFLFIAGLALFLLGLSWGGYPYYPWKSA 271 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc
Confidence 5899999999999999999998764 456653
No 117
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=32.19 E-value=1.4e+02 Score=21.92 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=7.4
Q ss_pred HHHHHHHcccccCCC
Q 047145 312 SIINIYRGFNILKPD 326 (383)
Q Consensus 312 g~~~i~~Gl~~~~~~ 326 (383)
-.+.+..+...++..
T Consensus 7 P~l~~l~~~p~~nr~ 21 (66)
T PF11755_consen 7 PFLALLWGPPFYNRV 21 (66)
T ss_pred HHHHHHHhHHHhccC
Confidence 344444555566543
No 118
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=31.23 E-value=3e+02 Score=22.62 Aligned_cols=44 Identities=7% Similarity=0.001 Sum_probs=25.6
Q ss_pred eehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhh
Q 047145 230 YLHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAF 281 (383)
Q Consensus 230 ~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l 281 (383)
+-|..--++.++++++.|.+... + .+ .....-.++++++++|++
T Consensus 26 k~yviGFiLSiiLT~I~F~~V~~--~---~l---~~~~~~~~I~~lAvvQi~ 69 (110)
T TIGR02908 26 KKQIVTFALMIFLTLIAFFAVML--D---EI---DKWFVIPFILLLAAVQVA 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--c---cC---ChhHHHHHHHHHHHHHHH
Confidence 34555556666666666654422 1 12 345556677788888874
No 119
>PF10002 DUF2243: Predicted membrane protein (DUF2243); InterPro: IPR018719 This entry includes membrane proteins of unknown function.
Probab=31.23 E-value=2.8e+02 Score=23.88 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhhe
Q 047145 235 CQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALL 284 (383)
Q Consensus 235 ~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~ 284 (383)
++....+++++|+++-.....+. ....+.-...|-+++....+|.+=++
T Consensus 51 FHa~~~~~~~~Gl~lL~r~~~r~-~~~~~~~~~~g~~l~G~G~Fnl~dG~ 99 (143)
T PF10002_consen 51 FHAFTWVATVAGLFLLWRADRRR-RRPWSGRRLWGGVLLGWGLFNLVDGV 99 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc-ccCccchhhHHHHHHHhhHHHHHHHH
Confidence 34456666666666544222111 11235667777777777777776443
No 120
>COG2149 Predicted membrane protein [Function unknown]
Probab=30.73 E-value=1.4e+02 Score=24.70 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHcc
Q 047145 304 VGYATIILSIINIYRGF 320 (383)
Q Consensus 304 ~G~~~~~lg~~~i~~Gl 320 (383)
+|.+++++|+.....|.
T Consensus 59 lg~fii~~gil~~a~g~ 75 (120)
T COG2149 59 LGVFLILVGILLAALGA 75 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 121
>PHA03048 IMV membrane protein; Provisional
Probab=30.48 E-value=2.7e+02 Score=21.93 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHcccccCC-CcccchhHHHHHHHHHHHHHHHHHH---HhhHhhhccc
Q 047145 302 HSVGYATIILSIINIYRGFNILKP-DNKWKQAYTGCIIVLVCVAVVLEIF---TWALVIKRKK 360 (383)
Q Consensus 302 ~~~G~~~~~lg~~~i~~Gl~~~~~-~~~~~~~~~~~~~~~~~~~v~lei~---~w~~~~~~~~ 360 (383)
.+.|.++++++.+=.+.=+.-..+ ...|..+-+ +++++++.+.+.+. .|.+.|...+
T Consensus 15 li~GIiLL~~aCIfAfidfsK~k~~~~~wRalsi--i~FIlgivl~lG~~ifsmy~r~C~~~~ 75 (93)
T PHA03048 15 LIGGIILLAASCIFAFVDFSKNKATVTVWRALSG--IAFVLGIVMTIGMLIYSMWGRYCTPSK 75 (93)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCCcchhHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 456777766666655544443333 344665433 33344444443333 4655665443
No 122
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=30.22 E-value=1.1e+02 Score=29.50 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=28.8
Q ss_pred eehhHHHHHHHHHHHHHHHHHcccccCCCcccch
Q 047145 298 NFYHHSVGYATIILSIINIYRGFNILKPDNKWKQ 331 (383)
Q Consensus 298 ~~~H~~~G~~~~~lg~~~i~~Gl~~~~~~~~~~~ 331 (383)
.+.|..+-.++++.-|.+++.+++++.-...|..
T Consensus 63 ~~fr~~~a~I~yivlw~~l~Stl~l~slg~~wv~ 96 (308)
T PF14800_consen 63 RYFRLLVAVIFYIVLWANLYSTLQLFSLGSHWVG 96 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHccchhhhcccHHHH
Confidence 4678888999999999999999999977766664
No 123
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=30.01 E-value=2.7e+02 Score=21.82 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHcccccCC---CcccchhHHHHHHHHHHHHHHHHHH---HhhHhhhc
Q 047145 302 HSVGYATIILSIINIYRGFNILKP---DNKWKQAYTGCIIVLVCVAVVLEIF---TWALVIKR 358 (383)
Q Consensus 302 ~~~G~~~~~lg~~~i~~Gl~~~~~---~~~~~~~~~~~~~~~~~~~v~lei~---~w~~~~~~ 358 (383)
.+.|.++++++.+=.+.=+.-..+ +..|..+-+ +++++++.+.+.+. .|. +|++
T Consensus 15 li~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSi--i~FIlG~vl~lGilifs~y~-~C~~ 74 (91)
T PHA02680 15 LICGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSV--TCFIVGAVLLLGLFVFSMYR-KCSG 74 (91)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHH--HHHHHHHHHHHHHHHHHHhc-ccCC
Confidence 356777777766666654443221 345765433 33444444444333 354 5553
No 124
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=29.69 E-value=5.4e+02 Score=27.05 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=32.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhh
Q 047145 194 NIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKL 253 (383)
Q Consensus 194 ~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~ 253 (383)
..|-++-.+.-++-+=++++=.+|.|. +++.|.++-+...=+-.+...+|++-|+.+
T Consensus 17 ~fH~lFvpltiGL~~~lai~E~~~~rt---g~~~y~~larFw~Klf~InFavGVvTGivm 73 (514)
T PRK15035 17 LYHFLFVPLTLGLIFLLAIMETIYVVT---GKTIYRDMTRFWGKLFGINFALGVATGLTM 73 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 567766666666666666666788776 466675554444433333333455555543
No 125
>PRK15049 L-asparagine permease; Provisional
Probab=29.42 E-value=3.2e+02 Score=28.24 Aligned_cols=22 Identities=5% Similarity=-0.112 Sum_probs=10.8
Q ss_pred ceeeeehhHHHHHHHHHHHHHH
Q 047145 294 RIYWNFYHHSVGYATIILSIIN 315 (383)
Q Consensus 294 r~~~~~~H~~~G~~~~~lg~~~ 315 (383)
|++..+...+..++.++...+-
T Consensus 415 ~pf~~~~~p~~~~~~l~~~~~~ 436 (499)
T PRK15049 415 VSFKLPGAPFTSWLTLLFLLSV 436 (499)
T ss_pred CCCcccCccHHHHHHHHHHHHH
Confidence 3444444556665555544333
No 126
>cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believ
Probab=29.39 E-value=5e+02 Score=27.02 Aligned_cols=57 Identities=7% Similarity=-0.055 Sum_probs=32.0
Q ss_pred cchhhhhhhHHHHHHHHHH-HHHHH---HHHHhhhhcccCCCcee----eehhhhHHHHHHHHHHHHhh
Q 047145 189 KLRKRNIHGVLNAVSWGLL-MPIGV---IIARYLKVFKSAGPAWF----YLHVSCQLSAYIVGVAGWAT 249 (383)
Q Consensus 189 ~~~~~~~Hg~lm~~aw~~l-~P~gi---l~aR~~k~~~~~~~~Wf----~~H~~~q~~~~~~~i~g~~l 249 (383)
-.+++..||.+|...|..- +..|. ++.|..+. ++.+| .++..+..++.++.+.++..
T Consensus 45 y~~~~t~Hg~~mif~~~~p~~~~g~~~~lvP~~~g~----~dl~~prln~~s~wl~~~g~~l~~~s~~~ 109 (488)
T cd01663 45 YNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGA----PDMAFPRLNNLSFWLLPPSLLLLLLSALV 109 (488)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3478899999999888763 22332 23343321 22333 34555666666666555544
No 127
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=29.29 E-value=4.6e+02 Score=24.19 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=34.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCC------ceeeehhhhHHHHHHHHHHHHhhhhh
Q 047145 191 RKRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGP------AWFYLHVSCQLSAYIVGVAGWATGIK 252 (383)
Q Consensus 191 ~~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~------~Wf~~H~~~q~~~~~~~i~g~~l~~~ 252 (383)
..+..| +++++++.+++..|..+..-+....+..+ ....+|..+..+-+++.+.-++.++.
T Consensus 17 ~~Ri~H-W~~Al~i~~l~~tG~~i~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~Rl~w~~~ 83 (235)
T PRK10171 17 PVRIWH-WLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIYWAFV 83 (235)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhCcCCCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667 78888899998888776421110000000 01346887776666666655555553
No 128
>PLN02631 ferric-chelate reductase
Probab=28.97 E-value=1.1e+02 Score=33.48 Aligned_cols=89 Identities=11% Similarity=0.006 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhhe---eccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcc----------cccCCCcccchhHH
Q 047145 268 LGIVIFCLGTLQAFALL---LRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGF----------NILKPDNKWKQAYT 334 (383)
Q Consensus 268 lG~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl----------~~~~~~~~~~~~~~ 334 (383)
.|++.+.++-+..+-+- +--...+-.-..++.+|+|+||++++++++=...=+ ....-...+.....
T Consensus 156 tGila~~~lpll~L~a~Rnn~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~~~~~~w~~~~~~~~~ 235 (699)
T PLN02631 156 IGYVGHICWAFLFFPVTRASTILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLMETFAWNPTYVPNLA 235 (699)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhHhh
Q 047145 335 GCIIVLVCVAVVLEIFTWALVI 356 (383)
Q Consensus 335 ~~~~~~~~~~v~lei~~w~~~~ 356 (383)
+++++++++.+...-..+..++
T Consensus 236 GviA~v~~~lm~~~Sl~~~RRr 257 (699)
T PLN02631 236 GTIAMVIGIAMWVTSLPSFRRK 257 (699)
T ss_pred HHHHHHHHHHHHHhccHHHHhh
No 129
>PRK03557 zinc transporter ZitB; Provisional
Probab=28.73 E-value=2.7e+02 Score=26.96 Aligned_cols=11 Identities=9% Similarity=-0.007 Sum_probs=5.0
Q ss_pred ccchhhHHHHH
Q 047145 264 THRTLGIVIFC 274 (383)
Q Consensus 264 ~H~~lG~~~~~ 274 (383)
.|...-++..+
T Consensus 52 ~hsl~D~~~~~ 62 (312)
T PRK03557 52 GHMLTDAAALL 62 (312)
T ss_pred HHHHHHHHHHH
Confidence 45444444433
No 130
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=28.73 E-value=1.1e+02 Score=20.10 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=4.4
Q ss_pred HhhHhhhccc
Q 047145 351 TWALVIKRKK 360 (383)
Q Consensus 351 ~w~~~~~~~~ 360 (383)
.++..|+||.
T Consensus 24 ~~YaCcykk~ 33 (38)
T PF02439_consen 24 FYYACCYKKH 33 (38)
T ss_pred HHHHHHHccc
Confidence 3344444443
No 131
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=28.39 E-value=66 Score=30.88 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhh
Q 047145 236 QLSAYIVGVAGWATG 250 (383)
Q Consensus 236 q~~~~~~~i~g~~l~ 250 (383)
-+..++++.+|++.+
T Consensus 180 svGSA~LT~IGLaAA 194 (295)
T TIGR01478 180 ALSSALLGNIGIAAA 194 (295)
T ss_pred ccHHHHHHHHHHHHH
Confidence 344555666666554
No 132
>TIGR00930 2a30 K-Cl cotransporter.
Probab=28.39 E-value=2.3e+02 Score=32.15 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=18.8
Q ss_pred CcceeeeehhHHHHHHHHHHHHHHHHH
Q 047145 292 KYRIYWNFYHHSVGYATIILSIINIYR 318 (383)
Q Consensus 292 ~~r~~~~~~H~~~G~~~~~lg~~~i~~ 318 (383)
..|+.++++|+|+..+..++.++-++.
T Consensus 490 ~~RP~fk~~~~~~sllG~l~c~~lmf~ 516 (953)
T TIGR00930 490 GWRPRFKYYHWWLSLLGASLCCAIMFL 516 (953)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHHH
Confidence 357788889998877766666555443
No 133
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=28.26 E-value=1.8e+02 Score=24.47 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=10.6
Q ss_pred ccchhhHHHHHHHH
Q 047145 264 THRTLGIVIFCLGT 277 (383)
Q Consensus 264 ~H~~lG~~~~~l~~ 277 (383)
+=+++|++++.+.+
T Consensus 33 PGsIiGmvLLfllL 46 (128)
T COG1380 33 PGSIIGMVLLFLLL 46 (128)
T ss_pred ChhHHHHHHHHHHH
Confidence 67899998887443
No 134
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=27.97 E-value=20 Score=34.38 Aligned_cols=17 Identities=29% Similarity=0.018 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHH
Q 047145 191 RKRNIHGVLNAVSWGLL 207 (383)
Q Consensus 191 ~~~~~Hg~lm~~aw~~l 207 (383)
+--..|..|.+.+-.++
T Consensus 17 r~p~~~a~l~~~~llll 33 (381)
T PF05297_consen 17 RCPQPHASLLFGLLLLL 33 (381)
T ss_dssp -----------------
T ss_pred CCCCcchhHHHHHHHHH
Confidence 34577887776554443
No 135
>PTZ00370 STEVOR; Provisional
Probab=27.56 E-value=69 Score=30.79 Aligned_cols=11 Identities=9% Similarity=0.670 Sum_probs=5.2
Q ss_pred HHHhhHhhhcc
Q 047145 349 IFTWALVIKRK 359 (383)
Q Consensus 349 i~~w~~~~~~~ 359 (383)
++-|+.+|||+
T Consensus 274 lYiwlyrrRK~ 284 (296)
T PTZ00370 274 LYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHhhcc
Confidence 34565444433
No 136
>PRK03735 cytochrome b6; Provisional
Probab=27.37 E-value=1.3e+02 Score=27.87 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=40.3
Q ss_pred chhhHHHHHHHHHHhhhhee-----ccCCC------------CCcceeeeehhHHHHHHHHHHHHHHHHHccccc
Q 047145 266 RTLGIVIFCLGTLQAFALLL-----RPKPD------------HKYRIYWNFYHHSVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 266 ~~lG~~~~~l~~~Q~l~~~~-----rp~~~------------~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
-.+|-++..+.++|++.|++ .|... -+.-...+.+|++-.-+.+++-.+-++-|+..-
T Consensus 42 ~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~g 116 (223)
T PRK03735 42 YCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTG 116 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 35577777777777764432 34432 123355678999999999999999998887653
No 137
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=27.22 E-value=88 Score=28.04 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhheeccCC
Q 047145 238 SAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKP 289 (383)
Q Consensus 238 ~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~ 289 (383)
.+.++.++.+++++....- ...+..-+++|.+++.+.++|+...++.|-+
T Consensus 89 ~g~~i~~I~filgl~~~cv--~~~~~fyRvi~~~l~laaV~qi~sLvIyPVk 138 (201)
T KOG4671|consen 89 IGAAILVICFILGLFALCV--PLKLVFYRVIGGLLFLAAVLQIISLVIYPVK 138 (201)
T ss_pred HHHHHHHHHHHHHHHHhcC--cceEEeeeHHHHHHHHHHHHHhheeEEeeee
Confidence 3445555566666654422 1234577899999999999998766666654
No 138
>CHL00070 petB cytochrome b6
Probab=27.01 E-value=1.4e+02 Score=27.54 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHhhhhee-----ccCCC------------CCcceeeeehhHHHHHHHHHHHHHHHHHccccc
Q 047145 267 TLGIVIFCLGTLQAFALLL-----RPKPD------------HKYRIYWNFYHHSVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 267 ~lG~~~~~l~~~Q~l~~~~-----rp~~~------------~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
.+|-++.++.++|++.|++ .|... -+.-...+.+|.+-.-+.+++..+-++-|+..-
T Consensus 35 ~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~g 108 (215)
T CHL00070 35 CLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTG 108 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666666667777654431 34432 133355678999999999999999998887653
No 139
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=26.98 E-value=85 Score=27.01 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhcc
Q 047145 332 AYTGCIIVLVCVAVVLEIFTWALVIKRK 359 (383)
Q Consensus 332 ~~~~~~~~~~~~~v~lei~~w~~~~~~~ 359 (383)
.|++++++.+.+.++.-...|.-.||||
T Consensus 31 m~tILiaIvVliiiiivli~lcssRKkK 58 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLCSSRKKK 58 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3444444444333333333444344444
No 140
>PRK10209 acid-resistance membrane protein; Provisional
Probab=26.93 E-value=2.8e+02 Score=24.73 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHccccc
Q 047145 303 SVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 303 ~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
.+|...++-|+.++..+++..
T Consensus 110 l~g~~~iv~Gi~~i~~a~~~~ 130 (190)
T PRK10209 110 FIAGLFCVGGIIRLMSGYKQR 130 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 455556666666666665543
No 141
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.87 E-value=1.3e+02 Score=27.32 Aligned_cols=45 Identities=7% Similarity=-0.066 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhH--HHHHHHHHHHHhh
Q 047145 198 VLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQ--LSAYIVGVAGWAT 249 (383)
Q Consensus 198 ~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q--~~~~~~~i~g~~l 249 (383)
+|+.++=.+++-.++-+.|+ +...-|+|+.-- .+|+.+.++|.++
T Consensus 11 vLLliG~~f~ligaIGLlRf-------PD~YtRLHAATKa~TLGv~LILlgv~l 57 (197)
T PRK12585 11 IMILIGGLLSILAAIGVIRL-------PDVYTRTHAAGISNTFGVSLLLFATVG 57 (197)
T ss_pred HHHHHHHHHHHHHHHHHHhc-------CcHHHHhhccccchhhhHHHHHHHHHH
Confidence 44555544444444455553 123457997764 5666666666554
No 142
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=26.67 E-value=1.8e+02 Score=21.34 Aligned_cols=24 Identities=8% Similarity=0.411 Sum_probs=11.4
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHH
Q 047145 294 RIYWNFYHHSVGYATIILSIINIY 317 (383)
Q Consensus 294 r~~~~~~H~~~G~~~~~lg~~~i~ 317 (383)
|....|+...+..+...+++.+.+
T Consensus 8 RT~LaW~Rt~l~l~~~g~~l~~~~ 31 (73)
T PF02656_consen 8 RTFLAWIRTALALVGVGLALLRFF 31 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555554444444444443
No 143
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=26.64 E-value=1.5e+02 Score=22.12 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 047145 332 AYTGCIIVLVCVAVVLEIFTWA 353 (383)
Q Consensus 332 ~~~~~~~~~~~~~v~lei~~w~ 353 (383)
++.+++.+++++.+++.+..+.
T Consensus 11 Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 11 GMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554
No 144
>PF14007 YtpI: YtpI-like protein
Probab=26.27 E-value=1.3e+02 Score=23.67 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHccc
Q 047145 268 LGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFN 321 (383)
Q Consensus 268 lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~ 321 (383)
+|+.++.+.+-|.+.. -..+=..+|.+.+++|..|++.|+.
T Consensus 39 lG~fl~~fgiNQ~~~~-------------~st~~~iV~~ifl~lG~~n~~~G~r 79 (89)
T PF14007_consen 39 LGIFLILFGINQMFLF-------------GSTVRLIVGAIFLVLGLFNLFAGIR 79 (89)
T ss_pred HHHHHHHHHHHHHHHc-------------ccHHHHHHHHHHHHHhHHHHHHHHH
No 145
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=25.28 E-value=69 Score=29.26 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047145 200 NAVSWGLLMPIGVIIARY 217 (383)
Q Consensus 200 m~~aw~~l~P~gil~aR~ 217 (383)
-++||.+++|+++.+.+.
T Consensus 120 G~ia~~lLl~LaiTS~~~ 137 (205)
T PRK05419 120 GMAAFLILLPLALTSTRA 137 (205)
T ss_pred HHHHHHHHHHHHHHhhHH
Confidence 344555555555555444
No 146
>PF11862 DUF3382: Domain of unknown function (DUF3382); InterPro: IPR021807 This entry represents the N-terminal domain of the LivHM type high-affinity branched-chain amino acid transport system permease proteins. The domain is about 100 amino acids in length, and is found associated with PF02653 from PFAM.
Probab=24.93 E-value=2.1e+02 Score=22.80 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhhhcccCCCccccc-----cchhhHHHHHHHHHHhhhhee-ccCCCCC-----cce-eeeehhHHHHHH
Q 047145 240 YIVGVAGWATGIKLGSESVGVVLKT-----HRTLGIVIFCLGTLQAFALLL-RPKPDHK-----YRI-YWNFYHHSVGYA 307 (383)
Q Consensus 240 ~~~~i~g~~l~~~~~~~~~~~~~~~-----H~~lG~~~~~l~~~Q~l~~~~-rp~~~~~-----~r~-~~~~~H~~~G~~ 307 (383)
+.+.+.+.++|+.+..+........ =.+++++...-.++|.+--.+ |+.++.+ ... -....++|+..+
T Consensus 14 l~lvl~~pi~Gl~l~~~g~~L~~~~r~~~~~~~V~~~~~~~Fl~qL~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 93 (101)
T PF11862_consen 14 LALVLFGPIVGLKLDNQGGQLVLEPRWGLLAWWVAVAAAGRFLFQLFRPWLARRFKKAPSGVPVLPPDGLPSLQRWIIPL 93 (101)
T ss_pred HHHHHHHHheEEEEecCCcEEEEEecchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcCCCccccchHHHHHHH
Confidence 3344456667776664332221112 235666666677777762221 1211111 111 345678888888
Q ss_pred HHHHHHH
Q 047145 308 TIILSII 314 (383)
Q Consensus 308 ~~~lg~~ 314 (383)
+++++++
T Consensus 94 llv~Alv 100 (101)
T PF11862_consen 94 LLVVALV 100 (101)
T ss_pred HHHHHHH
Confidence 8877754
No 147
>PRK13673 hypothetical protein; Provisional
Probab=24.89 E-value=4.1e+02 Score=22.11 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=18.8
Q ss_pred eehhhhHHHHHHHHHHHHhhhhhh
Q 047145 230 YLHVSCQLSAYIVGVAGWATGIKL 253 (383)
Q Consensus 230 ~~H~~~q~~~~~~~i~g~~l~~~~ 253 (383)
.+|+.+-+.-++..+.|+.+-+..
T Consensus 32 i~hMilRLfyil~iiTG~~l~~~~ 55 (118)
T PRK13673 32 ILHMILRLFYILIIITGFWLLIRS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589988888888888888776554
No 148
>PRK11513 cytochrome b561; Provisional
Probab=24.37 E-value=2.2e+02 Score=25.10 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=33.8
Q ss_pred ceeeehhhhHHHHHHHHHHHHhhhhhhcccC--CCcc--ccccchh-hHHHHHHHHHHhhhhee
Q 047145 227 AWFYLHVSCQLSAYIVGVAGWATGIKLGSES--VGVV--LKTHRTL-GIVIFCLGTLQAFALLL 285 (383)
Q Consensus 227 ~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~~~~--~~~H~~l-G~~~~~l~~~Q~l~~~~ 285 (383)
.++.+|..+-++.+++++.=++.-+...... ++.. ....+.+ -..+.++++.+|+.|++
T Consensus 40 ~~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H~~LY~lli~~plsG~~ 103 (176)
T PRK11513 40 LINMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGHLVIYLLFIALPVIGLV 103 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446899888888888877666655433211 1100 1111222 25666788889887765
No 149
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=24.14 E-value=1.4e+02 Score=26.65 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=14.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 047145 193 RNIHGVLNAVSWGLLMPIGVIIA 215 (383)
Q Consensus 193 ~~~Hg~lm~~aw~~l~P~gil~a 215 (383)
+..| +++++++.+++..|..+.
T Consensus 8 R~~H-W~~a~~~i~l~~tG~~~~ 29 (211)
T TIGR02125 8 RLFH-WVRALAIFVLIVTGFYIA 29 (211)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHc
Confidence 4455 466777777777777654
No 150
>PF15345 TMEM51: Transmembrane protein 51
Probab=24.04 E-value=99 Score=28.76 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047145 302 HSVGYATIILSIINIYR 318 (383)
Q Consensus 302 ~~~G~~~~~lg~~~i~~ 318 (383)
-.+|..+++||++-+..
T Consensus 10 ~AiG~Gml~LGiiM~vW 26 (233)
T PF15345_consen 10 TAIGVGMLALGIIMIVW 26 (233)
T ss_pred HHHhHhHHHHhhHheee
Confidence 45777777777765543
No 151
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=23.83 E-value=2.3e+02 Score=22.19 Aligned_cols=26 Identities=19% Similarity=0.246 Sum_probs=21.2
Q ss_pred eehhHHHHHHHHHHHHHHHHHccccc
Q 047145 298 NFYHHSVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 298 ~~~H~~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
+.+=+..|+..++.|++-+..++...
T Consensus 40 ~~l~r~~g~~~~~~~i~~li~~l~~~ 65 (97)
T PF12650_consen 40 KKLCRFMGKFMLIIGIILLIGGLLSF 65 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999998888433
No 152
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=23.80 E-value=1.9e+02 Score=23.90 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHccccc
Q 047145 302 HSVGYATIILSIINIYRGFNIL 323 (383)
Q Consensus 302 ~~~G~~~~~lg~~~i~~Gl~~~ 323 (383)
.+++.+++++|.+-+.+|+.+.
T Consensus 44 I~la~~Lli~G~~li~~g~l~~ 65 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLF 65 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888886554
No 153
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=23.72 E-value=2.1e+02 Score=28.35 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=34.2
Q ss_pred ccccchhhHHHHHHHHHHhh----hheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHccc
Q 047145 262 LKTHRTLGIVIFCLGTLQAF----ALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFN 321 (383)
Q Consensus 262 ~~~H~~lG~~~~~l~~~Q~l----~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~ 321 (383)
++.|..+|++..+..+..+. +.+.+-.++. ....++--+.+-.++++++..--..|+.
T Consensus 252 ~~~~~~i~lvm~vIi~~~IytT~vg~iy~l~~r~--~s~~~~~~~~i~~iilvi~~~~s~~Gf~ 313 (349)
T COG3949 252 KNFSPLIGLVMSVIIWLEIYTTTVGLIYGLASRL--TSFFPRRYWIIAAIILVIAYPLSFFGFI 313 (349)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCCchHHHHHHHHHHHHHHHHHhhHH
Confidence 57899999999988887764 3333322211 1111112234556667777777777775
No 154
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=23.63 E-value=6.7 Score=42.95 Aligned_cols=67 Identities=12% Similarity=0.258 Sum_probs=47.9
Q ss_pred cceeeeehhHHHHHHHHHHHHHHHHHcccccCCCcccchhHHHHHHHHHHHHHHHHHHHhhHhhhccc
Q 047145 293 YRIYWNFYHHSVGYATIILSIINIYRGFNILKPDNKWKQAYTGCIIVLVCVAVVLEIFTWALVIKRKK 360 (383)
Q Consensus 293 ~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~~~~~~~~~~~~~~~~~~~~v~lei~~w~~~~~~~~ 360 (383)
+|..|+-+|-..=.++.+.|++...+|+....-+.+|...-.+++++ +++.++-.+..|+..++-|+
T Consensus 146 l~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~~~GW~eG~aI~~sV-~~VV~VtA~nDy~qe~QF~~ 212 (1034)
T KOG0204|consen 146 LRFVWEALQDVTLIILMVAAVVSLGLGIYTPGIEDGWIEGVAILLSV-ILVVLVTAVNDYRQELQFRK 212 (1034)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhhhccCCCCcccccchhheeeE-EEEEEEeecchhHHhhhhhh
Confidence 56677777777777888889999999998887777888765554443 23334456778888777555
No 155
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.53 E-value=1.6e+02 Score=26.08 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHcc
Q 047145 300 YHHSVGYATIILSIINIYRGF 320 (383)
Q Consensus 300 ~H~~~G~~~~~lg~~~i~~Gl 320 (383)
.|+..+.+++++|++=+..|+
T Consensus 3 ~~~i~~i~~iilgilli~~gI 23 (191)
T PF04156_consen 3 KQRIISIILIILGILLIASGI 23 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655444443
No 156
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=23.23 E-value=8.9e+02 Score=27.81 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHH
Q 047145 234 SCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQ 279 (383)
Q Consensus 234 ~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q 279 (383)
.+=++++-++++|.++++...+. ..+.-..+|+++++-..+.
T Consensus 906 lii~~~iPl~~~g~~~~l~~~g~----~l~~~s~~G~i~l~GivV~ 947 (1051)
T TIGR00914 906 LLVFTGIPFALTGGVFALWLRGI----PLSISAAVGFIALSGVAVL 947 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC----CccHHHHHHHHHHHHHHHh
Confidence 34445666777777777665532 2356678898887655444
No 157
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=23.22 E-value=81 Score=22.57 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHccc
Q 047145 302 HSVGYATIILSIINIYRGFN 321 (383)
Q Consensus 302 ~~~G~~~~~lg~~~i~~Gl~ 321 (383)
..+|...++-|+.++...+.
T Consensus 26 ~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 26 IILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443
No 158
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.16 E-value=1.6e+02 Score=22.47 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=7.3
Q ss_pred HHHHHHHhhHhhhccc
Q 047145 345 VVLEIFTWALVIKRKK 360 (383)
Q Consensus 345 v~lei~~w~~~~~~~~ 360 (383)
+|..+..|...+.|++
T Consensus 16 fVap~WL~lHY~sk~~ 31 (75)
T PF06667_consen 16 FVAPIWLILHYRSKWK 31 (75)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3344444445555444
No 159
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=22.48 E-value=1.2e+02 Score=21.73 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047145 199 LNAVSWGLLMPIGVIIAR 216 (383)
Q Consensus 199 lm~~aw~~l~P~gil~aR 216 (383)
++.+++.+++=.|+++.+
T Consensus 8 ~l~~~~~~~~iSGi~l~~ 25 (64)
T PF14358_consen 8 LLLVSFLVLAISGILLSF 25 (64)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 445555555555555543
No 160
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=22.33 E-value=1.9e+02 Score=27.86 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHH
Q 047145 236 QLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCL 275 (383)
Q Consensus 236 q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l 275 (383)
...+.++++.|+.+.+...... ......+|.+++.+
T Consensus 6 ~~f~~~mGtg~l~~~~~~~~~~----~~~~~~~~~~~~~~ 41 (330)
T PF03595_consen 6 AWFGMVMGTGGLSNLLYLLPYH----FGGLAILSEVLFIL 41 (330)
T ss_dssp GGGHHHHHHHHHHHHHHTTTTT----STTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHHHH
Confidence 3447777777777776544321 23445555555543
No 161
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=22.26 E-value=6.9e+02 Score=23.81 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=40.2
Q ss_pred ccccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccccC
Q 047145 262 LKTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNILK 324 (383)
Q Consensus 262 ~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~ 324 (383)
...|..++++++.++....+...-+. + ...+.....--+++...+.++..+++.+|....+
T Consensus 131 ~~~Hl~~a~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~l~~~qi~lGa~va~ 191 (302)
T PF02628_consen 131 VTLHLLLALLIFALLVWLALRARRPE-E-SPRRLPRPRRLRWLAWAALVLVFIQIALGALVAG 191 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcc-c-cccccccchhHHHHHHHHHHHHHHHHhccceecc
Confidence 57899999999987777665443321 1 1112222233456777888899999999997654
No 162
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=22.03 E-value=2.8e+02 Score=28.28 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=9.8
Q ss_pred ceeeeehhHHHHHHHHHHHHH
Q 047145 294 RIYWNFYHHSVGYATIILSII 314 (383)
Q Consensus 294 r~~~~~~H~~~G~~~~~lg~~ 314 (383)
|++..+...+...+.++...+
T Consensus 403 ~p~~~~~~~~~~~~~~~~~~~ 423 (478)
T TIGR00913 403 LPYKSQTGPYGSYYALFFNIL 423 (478)
T ss_pred CCccCCCcchHHHHHHHHHHH
Confidence 344344555555554444433
No 163
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=21.86 E-value=2.6e+02 Score=28.15 Aligned_cols=13 Identities=8% Similarity=-0.015 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHHH
Q 047145 301 HHSVGYATIILSI 313 (383)
Q Consensus 301 H~~~G~~~~~lg~ 313 (383)
..+...+.+++.+
T Consensus 386 ~~~~~~l~~~~~~ 398 (442)
T TIGR00908 386 GILTPGVALVLAC 398 (442)
T ss_pred cchHHHHHHHHHH
Confidence 3444444444433
No 164
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.15 E-value=72 Score=23.13 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHcccccCC
Q 047145 302 HSVGYATIILSIINIYRGFNILKP 325 (383)
Q Consensus 302 ~~~G~~~~~lg~~~i~~Gl~~~~~ 325 (383)
|.+|.++++.|++=.+.|.+..++
T Consensus 1 kiigi~Llv~GivLl~~G~~~~~S 24 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFGYQASDS 24 (59)
T ss_pred CeeeehHHHHHHHHHHhhhhhhhh
Confidence 357889999999999999988754
No 165
>MTH00213 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=20.78 E-value=1.6e+02 Score=27.13 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=29.8
Q ss_pred eeehhHHHHHHHHHHHHHHHHHcccccCCCcccchhHHHHHHHHHHHHH
Q 047145 297 WNFYHHSVGYATIILSIINIYRGFNILKPDNKWKQAYTGCIIVLVCVAV 345 (383)
Q Consensus 297 ~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~~~~~~~~~~~~~~~~~~~~v 345 (383)
-|.+|..+-.++..+++.-+++-+...--.-...++|++-+.++++..+
T Consensus 21 kNpVhSaL~LIlvFi~iAgLyilLgAeFLA~iQILVYVGAIaVLFLFVI 69 (239)
T MTH00213 21 HNFLASVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVI 69 (239)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4788988888888887777765444321222244567766665554433
No 166
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=20.77 E-value=2.5e+02 Score=24.71 Aligned_cols=10 Identities=20% Similarity=0.640 Sum_probs=5.5
Q ss_pred HHhhHhhhcc
Q 047145 350 FTWALVIKRK 359 (383)
Q Consensus 350 ~~w~~~~~~~ 359 (383)
..|++.||+.
T Consensus 166 L~~~F~RR~~ 175 (215)
T PF05084_consen 166 LTWFFLRRTG 175 (215)
T ss_pred HHHHHHHhhc
Confidence 4566666544
No 167
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=20.55 E-value=2.3e+02 Score=25.38 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=4.4
Q ss_pred hhHHHHHHHH
Q 047145 268 LGIVIFCLGT 277 (383)
Q Consensus 268 lG~~~~~l~~ 277 (383)
.|+.+++...
T Consensus 82 ~gI~l~i~gs 91 (222)
T PF03006_consen 82 AGIFLLIAGS 91 (222)
T ss_pred hhhhHhHhhh
Confidence 4444444333
No 168
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=20.49 E-value=3.5e+02 Score=29.98 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=15.7
Q ss_pred CCCcceeeeehhHHHHHHHHHH
Q 047145 290 DHKYRIYWNFYHHSVGYATIIL 311 (383)
Q Consensus 290 ~~~~r~~~~~~H~~~G~~~~~l 311 (383)
...+|+.|+++||.+-.+-..|
T Consensus 596 tPnWRPRfkyyHW~LSflG~sL 617 (1075)
T KOG2082|consen 596 TPNWRPRFKYYHWSLSFLGASL 617 (1075)
T ss_pred CCCCCccchhhhhHHHHHHHHH
Confidence 3458999999999876543333
No 169
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=20.39 E-value=5.1e+02 Score=23.44 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=66.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCCCc-cccccchhhH
Q 047145 192 KRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESVGV-VLKTHRTLGI 270 (383)
Q Consensus 192 ~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~-~~~~H~~lG~ 270 (383)
....=|.+..+++.+..=.|++.+-|+.+-. .. +.+.+ . ....+-..++ ....|.+-.-
T Consensus 21 ~~~~~G~ll~~~~~iqiiTGi~La~~Y~p~~--~~-------A~~Sv---------~--~i~~ev~~G~liR~~H~~gas 80 (200)
T cd00284 21 YWWNFGSLLGTCLVIQILTGVFLAMHYTPDV--TL-------AFSSV---------Q--YIMRDVNFGWLIRSLHANGAS 80 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HH-------HHHHH---------H--HHHccCcchHHHHHHHHHHHH
Confidence 3455688888899999989999988876531 00 00000 0 0111111122 3467887777
Q ss_pred HHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccccCCCc
Q 047145 271 VIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNILKPDN 327 (383)
Q Consensus 271 ~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~~~ 327 (383)
..++++.+..+-+++-..-+.+ | ..-++.|.+++++.++..++|..+..+..
T Consensus 81 ~~~~~~~lH~~r~~~~gsY~~p-r----e~~W~~G~~l~~l~~~~af~GY~Lpw~q~ 132 (200)
T cd00284 81 MFFLMLYLHIFRGLYYGSYKKP-R----ELTWVIGVILLLLTMATAFMGYVLPWGQM 132 (200)
T ss_pred HHHHHHHHHHHHHHHHHHhcch-h----HHHHHHHHHHHHHHHHHHHcccccCchhh
Confidence 7777777777644432111111 1 23478899999999999999998876543
No 170
>COG4244 Predicted membrane protein [Function unknown]
Probab=20.32 E-value=3.9e+02 Score=23.45 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=19.8
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHHHcccccCCC
Q 047145 294 RIYWNFYHHSVGYATIILSIINIYRGFNILKPD 326 (383)
Q Consensus 294 r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~~ 326 (383)
+..-.+-|........++++.|........++.
T Consensus 83 ~~~a~wh~~lG~il~~~la~~~~~r~~~~~~~~ 115 (160)
T COG4244 83 KQAAEWHHVLGNILLIVLAILTAWRYVHRNDAV 115 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 344455555555566778888888844444443
No 171
>COG1971 Predicted membrane protein [Function unknown]
Probab=20.22 E-value=4.3e+02 Score=23.91 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhheeccCCC
Q 047145 238 SAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPKPD 290 (383)
Q Consensus 238 ~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~ 290 (383)
.-++..++|..++..+. ++....-+|+|.+++.+..++++--.++|+.+
T Consensus 46 f~~i~pliG~~~g~~~s----~~i~~~~~wigf~lL~~lG~~mI~e~f~~~~~ 94 (190)
T COG1971 46 FQAIMPLIGWFIGKFLS----TFIAEWAHWIGFVLLIILGLKMIIEGFKNEED 94 (190)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhc
Confidence 34445555555554443 12223456777777777777766555555543
No 172
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=20.21 E-value=2.1e+02 Score=25.92 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHhhhhe-----eccCCC------------CCcceeeeehhHHHHHHHHHHHHHHHHHcccc
Q 047145 267 TLGIVIFCLGTLQAFALL-----LRPKPD------------HKYRIYWNFYHHSVGYATIILSIINIYRGFNI 322 (383)
Q Consensus 267 ~lG~~~~~l~~~Q~l~~~-----~rp~~~------------~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~ 322 (383)
.+|-++....++|.+.|+ ..|... -+.-...+..|++-.-..+++-.+-++-++..
T Consensus 24 ~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~ 96 (200)
T cd00284 24 NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYY 96 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777778888876443 245532 12335677899999999999888888877765
No 173
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=20.17 E-value=6.4e+02 Score=22.64 Aligned_cols=115 Identities=10% Similarity=0.125 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeehhhhHHHHHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHH
Q 047145 196 HGVLNAVSWGLLMPIGVIIARYLKVFKSAGPAWFYLHVSCQLSAYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCL 275 (383)
Q Consensus 196 Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l 275 (383)
.++-|.+|..+.+-...++....|++-. .| ...+++..+++.++.++-.+.+.-+ .+....|+.+|+.+-.+
T Consensus 37 ~a~~mGlav~~V~~~s~~~~~~l~~~il-~p-----~~~lr~~~~ilviA~~v~~v~~~l~--~~~p~l~~~LgiylpLi 108 (190)
T PF02508_consen 37 NALGMGLAVTFVLTLSSVLISLLRNFIL-AP-----PSYLRIIVFILVIASLVQLVEMVLR--AYFPSLYKALGIYLPLI 108 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-----HHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHhhhHH
Confidence 5566888887777777777666665310 01 5667777888777777655432211 12235677788764433
Q ss_pred HHHHh-hhhee--ccCCCCCcceeeeehhHHHHHHHHHHHHHHHHH
Q 047145 276 GTLQA-FALLL--RPKPDHKYRIYWNFYHHSVGYATIILSIINIYR 318 (383)
Q Consensus 276 ~~~Q~-l~~~~--rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~ 318 (383)
..==. ++... ..+..+.......-+=.-+|+.+.++-...+-.
T Consensus 109 ~~Nc~VLg~~~~~~~~~~~~~~s~~~glg~glGf~lal~l~a~iRE 154 (190)
T PF02508_consen 109 TVNCAVLGRAEFFASKGYSFLESLVDGLGAGLGFTLALVLLAGIRE 154 (190)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 22211 111122223333334445666555555544433
No 174
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=20.09 E-value=3.6e+02 Score=21.78 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=11.9
Q ss_pred CcccchhHHHHHHHHHHHHHH
Q 047145 326 DNKWKQAYTGCIIVLVCVAVV 346 (383)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~v~ 346 (383)
++.|..+.++++..+++..++
T Consensus 14 g~sW~~LVGVv~~al~~SlLI 34 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLI 34 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHH
Confidence 567877666555555444433
No 175
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=20.09 E-value=2.4e+02 Score=27.79 Aligned_cols=59 Identities=17% Similarity=0.047 Sum_probs=25.5
Q ss_pred ccchhhHHHHHHHHHHhh---hheeccCCCCCcc---eeeeehhHHH---HHHHHHHHHHHHHHcccc
Q 047145 264 THRTLGIVIFCLGTLQAF---ALLLRPKPDHKYR---IYWNFYHHSV---GYATIILSIINIYRGFNI 322 (383)
Q Consensus 264 ~H~~lG~~~~~l~~~Q~l---~~~~rp~~~~~~r---~~~~~~H~~~---G~~~~~lg~~~i~~Gl~~ 322 (383)
.-..+|-+++++..+-.. .-++||.+..... ...+..|+.+ -.++.+.-++-+..|...
T Consensus 154 ~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~li~~Pl~li~la~~GY~y 221 (340)
T PF12794_consen 154 ARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQPKPDSWIHRLRYLWWPLLILAPLALIVLALLGYYY 221 (340)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345666666554444432 2234554332211 2223334333 333444444555556554
No 176
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=20.04 E-value=2.8e+02 Score=22.29 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=19.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhHhhhcccCCCCCCCCCCCCCCCCCC
Q 047145 327 NKWKQAYTGCIIVLVCVAVVLEIFTWALVIKRKKSGSGDKISQSVNGSNGNN 378 (383)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~v~lei~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (383)
+.|-+..|-++++++.+-+ ..-+.+|-|+....+...+.+.--+|+.|
T Consensus 16 ~PWeIfLItLasVvvavGl----~aGLfFcvR~~lslrn~~~ta~Y~PHg~n 63 (106)
T PF14654_consen 16 KPWEIFLITLASVVVAVGL----FAGLFFCVRNSLSLRNTFDTAVYRPHGPN 63 (106)
T ss_pred cchHHHHHHHHHHHHHHHH----HHHHHHHhhhccccccccccceEccCCcc
Confidence 4455544444444333333 33334443433333333333444444444
Done!