Query 047145
Match_columns 383
No_of_seqs 203 out of 1134
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 14:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d7b_A Cellobiose dehydrogenas 99.6 1.2E-14 4.1E-19 129.3 15.6 135 33-177 22-177 (186)
2 2l8s_A Integrin alpha-1; trans 84.7 1.5 5E-05 30.2 4.5 35 328-362 9-43 (54)
3 2knc_A Integrin alpha-IIB; tra 80.5 3.5 0.00012 28.3 5.1 34 329-362 13-46 (54)
4 1kqf_C FDH-N gamma, formate de 74.0 4.6 0.00016 35.5 5.6 29 296-324 108-136 (217)
5 4gd3_A NI/Fe-hydrogenase 1 B-t 67.8 9.5 0.00033 34.0 6.4 18 307-324 135-152 (235)
6 2l2t_A Receptor tyrosine-prote 66.3 11 0.00037 24.7 4.6 13 350-362 29-41 (44)
7 2ks1_B Epidermal growth factor 65.8 11 0.00038 24.6 4.6 10 351-360 31-40 (44)
8 2k1a_A Integrin alpha-IIB; sin 54.6 15 0.0005 23.8 3.6 31 329-359 11-41 (42)
9 2l2t_A Receptor tyrosine-prote 36.2 58 0.002 21.2 4.3 16 346-361 28-43 (44)
10 4ev6_A Magnesium transport pro 34.4 46 0.0016 31.1 5.3 38 304-341 285-323 (339)
11 2ks1_B Epidermal growth factor 30.8 49 0.0017 21.5 3.3 15 347-361 30-44 (44)
12 2iub_A CORA, divalent cation t 26.1 37 0.0013 32.2 3.0 38 304-341 309-347 (363)
13 3l1l_A Arginine/agmatine antip 24.4 2.4E+02 0.0082 26.5 8.6 12 300-311 386-397 (445)
14 3j1z_P YIIP, cation efflux fam 23.4 3.5E+02 0.012 24.6 9.1 81 239-322 22-106 (306)
15 4gd3_A NI/Fe-hydrogenase 1 B-t 23.4 3E+02 0.01 23.8 8.4 58 192-251 18-82 (235)
16 4djk_A Probable glutamate/gamm 23.3 1.5E+02 0.0051 28.7 7.0 13 305-317 416-428 (511)
17 2nr1_A NR1 M2, M2; receptor, s 22.2 62 0.0021 18.7 2.2 16 197-212 10-25 (27)
18 1vf5_A Cytochrome B6; photosyn 21.7 1.8E+02 0.0063 25.5 6.4 60 263-327 84-143 (215)
19 2klu_A T-cell surface glycopro 21.5 75 0.0026 22.6 3.0 11 356-366 36-46 (70)
20 1mhs_A Proton pump, plasma mem 20.9 4.1E+02 0.014 28.5 10.2 17 341-357 865-881 (920)
No 1
>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*
Probab=99.61 E-value=1.2e-14 Score=129.32 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=101.1
Q ss_pred CCceEEEEEEeCCC----CeEEEEEEEecCCCCCeEEEEEcCCCCCCCCCcEEEEEEcCCCcEEEEEeecccccccc-cC
Q 047145 33 VLNAYIHYNYDSSS----GKLEIGYRQTRVSSAQWVSWAVNPTEQGMVGSQALVAYRQPDGKIRAYTSPITQYQTTL-AE 107 (383)
Q Consensus 33 ~~~~~l~W~~~~~~----~~i~i~~~~~~~~~~GWVA~Gfs~~g~~M~gad~vI~~~~~~G~v~v~~~~~~g~~~p~-~~ 107 (383)
..++.+.|.+..+. +.-+|+++++.|.+.||+|||+ |.+|.|++|+|+|+++ |++++++|+.+||.+|. ++
T Consensus 22 ~~~~~f~~alP~~~~s~~~s~d~~~qi~~p~~~gW~g~g~---Gg~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~~y~ 97 (186)
T 1d7b_A 22 VHDVTYGFVFPPLATSGAQSTEFIGEVVAPIASKWIGIAL---GGAMNNDLLLVAWANG-NQIVSSTRWATGYVQPTAYT 97 (186)
T ss_dssp TTTEEEEEEBCCCCSSSCCCCCEEEEEEEETTCCEEEEET---TSSSSSSCEEEEEEET-TEEEEEEEECSSSSCCEECC
T ss_pred CCCEEEEEECCCcccCCCCCccEEEEEEccCCCCEEEEec---CCCCCCCcEEEEEeCC-CEEEEEEEEecCccCCCccC
Confidence 55688888875322 2357888888887899999999 4569999999999975 88999999999999997 78
Q ss_pred CCceeeeccccEEEeCCEEEEEEEe----cc-CCC----CcceeEEEeeCCCC-------CCCCCCCCCCCCCCccceee
Q 047145 108 GNLAFDVSDLTATYANNEMIIFATL----GL-QNG----TTTLHQVWQQGPLS-------GNVPAIHSTTGPNVQSMGTL 171 (383)
Q Consensus 108 ~~~~~~l~~~s~~~~~g~~~~~~~~----~l-~~~----~~~~~~IwA~G~~~-------~~~l~~H~~~~~n~~~~~~l 171 (383)
++.+++++..++ ++++++++.|++ .+ ..+ +....++||+++.. +..+.+|+. .|.+.+
T Consensus 98 ~~~~~~lL~gs~-vn~t~~~~~f~C~~C~~w~~~g~~~~ts~~~~iwA~~~~~p~~~~~~~a~~~~H~~-----~G~~~~ 171 (186)
T 1d7b_A 98 GTATLTTLPETT-INSTHWKWVFRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTD-----FGFFGI 171 (186)
T ss_dssp SSCEEEECTTCE-ECSSEEEEEEEEETTTBCTTSCBCCTTSEEEEEEEEESSCCSCTTCTTCCCCCCSE-----EEEEEE
T ss_pred CCceEEEccccc-EeCCEEEEEEEeCCCcccCCCCccccCCCCeEEEEECCCCCCCCCCCcccchhhhC-----cceEEE
Confidence 778899988654 467887765443 34 222 12238999997542 346788875 478999
Q ss_pred eeccCC
Q 047145 172 NLFSGQ 177 (383)
Q Consensus 172 dl~~g~ 177 (383)
||.+..
T Consensus 172 dL~~a~ 177 (186)
T 1d7b_A 172 DYSTAH 177 (186)
T ss_dssp EGGGCB
T ss_pred Eccccc
Confidence 999543
No 2
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=84.70 E-value=1.5 Score=30.19 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=19.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhHhhhcccCC
Q 047145 328 KWKQAYTGCIIVLVCVAVVLEIFTWALVIKRKKSG 362 (383)
Q Consensus 328 ~~~~~~~~~~~~~~~~~v~lei~~w~~~~~~~~~~ 362 (383)
-|.++..++..++++..+++-.+++-+++|+|+.+
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~~ 43 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKK 43 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcch
Confidence 35555444455555545555556666676666544
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=80.53 E-value=3.5 Score=28.33 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=17.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhHhhhcccCC
Q 047145 329 WKQAYTGCIIVLVCVAVVLEIFTWALVIKRKKSG 362 (383)
Q Consensus 329 ~~~~~~~~~~~~~~~~v~lei~~w~~~~~~~~~~ 362 (383)
|.++..++..++++..+++-.+++-+++|+|+.+
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFkR~~~~~ 46 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKRNRPPL 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCCCCc
Confidence 4444444444444444455556666677666533
No 4
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=73.98 E-value=4.6 Score=35.51 Aligned_cols=29 Identities=10% Similarity=0.175 Sum_probs=22.7
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHcccccC
Q 047145 296 YWNFYHHSVGYATIILSIINIYRGFNILK 324 (383)
Q Consensus 296 ~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~ 324 (383)
.+|...+..=.+++++.++.+.+|+-++.
T Consensus 108 ~~n~~~~~~~~~l~~l~~~~~~TG~~~~~ 136 (217)
T 1kqf_C 108 KYNAGQKMMFWSIMSMIFVLLVTGVIIWR 136 (217)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777667788888899999998875
No 5
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=67.81 E-value=9.5 Score=33.96 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHcccccC
Q 047145 307 ATIILSIINIYRGFNILK 324 (383)
Q Consensus 307 ~~~~lg~~~i~~Gl~~~~ 324 (383)
+++++.++.+.+|+-+..
T Consensus 135 ~l~~ll~~~~ltG~~~~~ 152 (235)
T 4gd3_A 135 GYFLMSVFMIITGFALYS 152 (235)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 667777777778876653
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=66.31 E-value=11 Score=24.70 Aligned_cols=13 Identities=8% Similarity=-0.113 Sum_probs=6.1
Q ss_pred HHhhHhhhcccCC
Q 047145 350 FTWALVIKRKKSG 362 (383)
Q Consensus 350 ~~w~~~~~~~~~~ 362 (383)
..|+++||||+++
T Consensus 29 ~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 29 TFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHTTCSSC
T ss_pred HHHHHhhhhhhhh
Confidence 3444555544433
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=65.79 E-value=11 Score=24.65 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=4.5
Q ss_pred HhhHhhhccc
Q 047145 351 TWALVIKRKK 360 (383)
Q Consensus 351 ~w~~~~~~~~ 360 (383)
.|+++||||.
T Consensus 31 ~~~~~RRr~~ 40 (44)
T 2ks1_B 31 IGLFMRRRHI 40 (44)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHhhhhHh
Confidence 4444444444
No 8
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=54.65 E-value=15 Score=23.82 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=13.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhHhhhcc
Q 047145 329 WKQAYTGCIIVLVCVAVVLEIFTWALVIKRK 359 (383)
Q Consensus 329 ~~~~~~~~~~~~~~~~v~lei~~w~~~~~~~ 359 (383)
|.++..++..++++..+++-.+++-+++|+|
T Consensus 11 wiIi~s~l~GLllL~li~~~LwK~GFFkR~~ 41 (42)
T 2k1a_A 11 WWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 4443333333334333444444444554443
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=36.20 E-value=58 Score=21.20 Aligned_cols=16 Identities=13% Similarity=-0.166 Sum_probs=10.1
Q ss_pred HHHHHHhhHhhhcccC
Q 047145 346 VLEIFTWALVIKRKKS 361 (383)
Q Consensus 346 ~lei~~w~~~~~~~~~ 361 (383)
.+-.+.|+.+++|+|+
T Consensus 28 ~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 28 LTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHTTCSSCCC
T ss_pred HHHHHHhhhhhhhhcc
Confidence 3456667777766654
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=34.43 E-value=46 Score=31.14 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHcccccC-CCcccchhHHHHHHHHH
Q 047145 304 VGYATIILSIINIYRGFNILK-PDNKWKQAYTGCIIVLV 341 (383)
Q Consensus 304 ~G~~~~~lg~~~i~~Gl~~~~-~~~~~~~~~~~~~~~~~ 341 (383)
+..+.+.+.+++.+.|+...+ +...|..+|.+++++.+
T Consensus 285 it~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~ 323 (339)
T 4ev6_A 285 VTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMV 323 (339)
T ss_dssp HHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHH
Confidence 334445567778888888764 44556666655444433
No 11
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=30.76 E-value=49 Score=21.52 Aligned_cols=15 Identities=7% Similarity=-0.401 Sum_probs=9.7
Q ss_pred HHHHHhhHhhhcccC
Q 047145 347 LEIFTWALVIKRKKS 361 (383)
Q Consensus 347 lei~~w~~~~~~~~~ 361 (383)
+-.+.|+.+++|+|+
T Consensus 30 ~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 30 GIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHTTTCCSCC
T ss_pred HHHHHhhhhHhhccC
Confidence 346677777776663
No 12
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=26.07 E-value=37 Score=32.20 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHcccccC-CCcccchhHHHHHHHHH
Q 047145 304 VGYATIILSIINIYRGFNILK-PDNKWKQAYTGCIIVLV 341 (383)
Q Consensus 304 ~G~~~~~lg~~~i~~Gl~~~~-~~~~~~~~~~~~~~~~~ 341 (383)
+..+.+.+.+++.+.|+...+ +...|..+|.+++++.+
T Consensus 309 it~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~ 347 (363)
T 2iub_A 309 IATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMG 347 (363)
T ss_dssp HHHHHHHHHHHTTSCC--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHH
Confidence 333444445555556666543 34456666655444333
No 13
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=24.40 E-value=2.4e+02 Score=26.51 Aligned_cols=12 Identities=8% Similarity=-0.031 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHH
Q 047145 300 YHHSVGYATIIL 311 (383)
Q Consensus 300 ~H~~~G~~~~~l 311 (383)
.+.+++.+..+.
T Consensus 386 ~~~~~~~~~~~~ 397 (445)
T 3l1l_A 386 AYLAVTTIAFLY 397 (445)
T ss_dssp TTHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 444444443333
No 14
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=23.38 E-value=3.5e+02 Score=24.59 Aligned_cols=81 Identities=11% Similarity=-0.017 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhhhhcccCCCccccccchhhHHHHHHHHHHhhhheeccC-CCCC---cceeeeehhHHHHHHHHHHHHH
Q 047145 239 AYIVGVAGWATGIKLGSESVGVVLKTHRTLGIVIFCLGTLQAFALLLRPK-PDHK---YRIYWNFYHHSVGYATIILSII 314 (383)
Q Consensus 239 ~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~-~~~~---~r~~~~~~H~~~G~~~~~lg~~ 314 (383)
.++++++-++.++..++.+ =+....|...-++..++.++-.-.. -||. ++.+ .| .=...=...|.++++++..
T Consensus 22 n~~l~~~k~~ag~~sgS~A-LlaDa~hsl~D~~s~~i~l~~~~~s-~k~~d~~~pyG~~R-~E~l~al~~~~~l~~~~~~ 98 (306)
T 3j1z_P 22 ALTLITIKLLAWLYSGSAS-MLASLTDSFADTLASIINFIAIRYA-IVPADHDHRYGHGK-AEPLAALAQSAFIMGSAFL 98 (306)
T ss_dssp HHHHTHHHHHTCTTSSSSC-CCTHHHHTTHHHHHHHHHHHHHHHH-TSCCCCTTSSCCTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCchhh-HHHHHHHHHHHHHHHHHHH
Confidence 3455555666565544322 1234678887777666544332111 2332 2211 11 1111223456666666655
Q ss_pred HHHHcccc
Q 047145 315 NIYRGFNI 322 (383)
Q Consensus 315 ~i~~Gl~~ 322 (383)
-++.++.-
T Consensus 99 i~~eai~~ 106 (306)
T 3j1z_P 99 LLFYGGER 106 (306)
T ss_dssp HHHHHHHT
T ss_pred HHHHhhhh
Confidence 55555543
No 15
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=23.35 E-value=3e+02 Score=23.80 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=33.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCc------e-eeehhhhHHHHHHHHHHHHhhhh
Q 047145 192 KRNIHGVLNAVSWGLLMPIGVIIARYLKVFKSAGPA------W-FYLHVSCQLSAYIVGVAGWATGI 251 (383)
Q Consensus 192 ~~~~Hg~lm~~aw~~l~P~gil~aR~~k~~~~~~~~------W-f~~H~~~q~~~~~~~i~g~~l~~ 251 (383)
.+..| +++++++.+++..|..+........ +.+. | ..+|..+-.+-+++.++=++.++
T Consensus 18 ~R~~H-W~~a~~ii~l~~tG~~~~~~~~~~~-g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~ 82 (235)
T 4gd3_A 18 VRIWH-WLTVLCMAVLMVTGYFIGKPLPSVS-GEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAF 82 (235)
T ss_dssp TTHHH-HHHHHHHHHHHHHHHHHHSCCCCCC-SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhcCcccccc-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667 6888888888888876642111000 1111 1 23788877766666655444444
No 16
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=23.30 E-value=1.5e+02 Score=28.67 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 047145 305 GYATIILSIINIY 317 (383)
Q Consensus 305 G~~~~~lg~~~i~ 317 (383)
..+.++...+.++
T Consensus 416 ~~~~~~~~~~~~~ 428 (511)
T 4djk_A 416 AIVGLLTSIMAFI 428 (511)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 17
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=22.25 E-value=62 Score=18.66 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 047145 197 GVLNAVSWGLLMPIGV 212 (383)
Q Consensus 197 g~lm~~aw~~l~P~gi 212 (383)
..-|..+|++|+-.|+
T Consensus 10 ~aa~wF~WGvllnsgi 25 (27)
T 2nr1_A 10 SSAMWFSWGVLLNSGI 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHhheeccc
Confidence 3458889999998776
No 18
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=21.69 E-value=1.8e+02 Score=25.47 Aligned_cols=60 Identities=12% Similarity=0.105 Sum_probs=41.0
Q ss_pred cccchhhHHHHHHHHHHhhhheeccCCCCCcceeeeehhHHHHHHHHHHHHHHHHHcccccCCCc
Q 047145 263 KTHRTLGIVIFCLGTLQAFALLLRPKPDHKYRIYWNFYHHSVGYATIILSIINIYRGFNILKPDN 327 (383)
Q Consensus 263 ~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~Gl~~~~~~~ 327 (383)
..|..=.-..++++.+.+.-++..-.-+.+ +..-+..|.+++++..++.++|.-+.....
T Consensus 84 ~~H~~gAs~ffi~~ylHi~Rglyygsy~~p-----~~~~W~~Gv~l~~l~m~~aF~GYvLPwgqm 143 (215)
T 1vf5_A 84 SIHRWSASMMVLMMILHVFRVYLTGGFKKP-----RELTWISGVILAVITVSFGVTGYSLPWDQV 143 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSSS-----CSHHHHHHHHHHHHHHHHHHHHTTTTCBHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhcccC-----CCceeHhHHHHHHHHHHHHHcccccCCCcc
Confidence 578777777777777777755532111111 123478999999999999999998876653
No 19
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=21.53 E-value=75 Score=22.56 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=5.2
Q ss_pred hhcccCCCCCC
Q 047145 356 IKRKKSGSGDK 366 (383)
Q Consensus 356 ~~~~~~~~~~~ 366 (383)
+|||++||=.|
T Consensus 36 hRrrqAeRMSQ 46 (70)
T 2klu_A 36 HRRRQAERMSQ 46 (70)
T ss_dssp CCSSSCTTSSH
T ss_pred HHHHHHHHHHH
Confidence 34444555443
No 20
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=20.91 E-value=4.1e+02 Score=28.53 Aligned_cols=17 Identities=6% Similarity=-0.001 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhHhhh
Q 047145 341 VCVAVVLEIFTWALVIK 357 (383)
Q Consensus 341 ~~~~v~lei~~w~~~~~ 357 (383)
+++.++.|+.+|..+++
T Consensus 865 ~~~~~~~e~~k~~~~~~ 881 (920)
T 1mhs_A 865 FGIFCIMGGVYYILQDS 881 (920)
T ss_dssp THHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34456678887655443
Done!