BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047146
         (608 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/584 (61%), Positives = 450/584 (77%), Gaps = 15/584 (2%)

Query: 31  LESSKSVGQLKQFHAFIIKT-GSPQHQTQI------LYDKIISLSRGNEIENLS-LQNPQ 82
           L++ KS+  LKQ HA IIKT  SP  Q  I      L  + + +     +  L+ L+ P 
Sbjct: 29  LQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPN 88

Query: 83  VYLYNFIIQCL--SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           + LYN II+ L  SN + +E + +Y++ML KG++P+ YT+P+VLKAC +S+++R G++VH
Sbjct: 89  LPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVH 148

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
             ++K  L S+VYV NTLMR+YAVC +I++  K+F        QRDLVSWTT+IQ YVKM
Sbjct: 149 GQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFD----TSPQRDLVSWTTMIQGYVKM 204

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
            +  E +  FF+MC  NL+ DGM LVIVLS+C++LGDL LG K+HRYI  N  N++ DVF
Sbjct: 205 GFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNS-NVNLDVF 263

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           + NAL+DMYLKCG+   ARKVF EMPVKNVVSWNSMI+GL  +GQFKE+L +FR+MQ LG
Sbjct: 264 VGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG 323

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           +KPDD TLV VLNSCAN+G LELGKWVH YLD+N I  DGFIGNALVDMYAKCG IDQA 
Sbjct: 324 VKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQAC 383

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF++M  +DVYSYTAMIVGLA+HG+  KALD+FSEM ++GIEPDEVTFVGVL+ACSH G
Sbjct: 384 WVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVG 443

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LVEEG K+F DMS +YNL+PQ EHYGCMVDL GRAGLI EA + I++MP+ PDAFV GAL
Sbjct: 444 LVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGAL 503

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           LGACKIH KVEL E VM+ + + EP  DGAY+LM+NIYSS NRW++ALKLRK MKER ++
Sbjct: 504 LGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLE 563

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
           KTPGCS +E+ G  +EF+KGDKSHPK  EIYKLLDEIM   KN+
Sbjct: 564 KTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKNN 607


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/589 (60%), Positives = 434/589 (73%), Gaps = 31/589 (5%)

Query: 25  LHQSPRL---ESSKSVGQLKQFHAFIIKTGSPQHQTQI------------------LYDK 63
            H+ P+L    S KSV ++KQ HA IIK  + +  T +                  L D 
Sbjct: 24  FHEFPQLLLLSSCKSVREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQDVHLADS 83

Query: 64  IISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL--EAIALYREMLIKGLLPNTYTLP 121
           I +L   + + N   QNP VY++N IIQ LS +N       +LYR+ML+ GL P+TYTLP
Sbjct: 84  IQNLWYASSLANFCHQNP-VYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLP 142

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           Y+LKAC QS +     Q+HA+S+KT L SN++V NTLMR YAV G I+AV K+F   Q P
Sbjct: 143 YLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVF--DQGP 200

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
               DL+SWTTLIQAY KM YP+EAI +FF M   N   D M LV+VLSACS+LGD +LG
Sbjct: 201 H--WDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADRMTLVVVLSACSQLGDFTLG 255

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            KI  Y+  + F++  DVF+ NAL+DMYLKCG    AR++F  MPVKN+VSWNSMI+GL 
Sbjct: 256 KKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLA 315

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
           H+G FKEAL +FRRMQ +GLKPD  TLV VLNSCAN+G LELGKWVH+Y+DKNH+  DG+
Sbjct: 316 HQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGY 375

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           + NALVDMYAKCG IDQAF VF++MKC+DVYSYTAMIVG A+HGKA +AL IFSEM ++G
Sbjct: 376 VANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMG 435

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           + PD VT VGVLSACSHAGL+EEG +HF DMSR+Y+LQPQTEHYGCMVDL GRAGLI EA
Sbjct: 436 VRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEA 495

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
                 MP+VPDA VWG+LLGACKIHAKVEL E V++ L+  EPE DGAYILM+NIYSS 
Sbjct: 496 EAFTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSA 555

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
           NRW++ALK RK MK+  +KKTPGCS +EV G  +EFRKG+KSHPK+ E+
Sbjct: 556 NRWRDALKWRKAMKQNNIKKTPGCSSIEVDGMVHEFRKGEKSHPKSREM 604


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/584 (57%), Positives = 421/584 (72%), Gaps = 52/584 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKT-GSPQHQTQI------LYDKIISLSRGNEIENLS-LQNPQ 82
           L++ KS+  LKQ HA IIKT  SP  Q  I      L  + + +     +  L+ L+ P 
Sbjct: 44  LQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPN 103

Query: 83  VYLYNFIIQCL--SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           + LYN II+ L  SN + +E + +Y++ML KG++P+ YT+P+VLKAC +S+++R G++VH
Sbjct: 104 LPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVH 163

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
             ++K  L S+VYV NTLMR+YAVC +I++  K+F        QRDLVSWTT+IQ YVKM
Sbjct: 164 GQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFD----TSPQRDLVSWTTMIQGYVKM 219

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
            +  E +                                 G+ I R     + N++ DVF
Sbjct: 220 GFAREGV---------------------------------GLYIIR-----NSNVNLDVF 241

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           + NAL+DMYLKCG+   ARKVF EMPVKNVVSWNSMI+GL  +GQFKE+L +FR+MQ LG
Sbjct: 242 VGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG 301

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           +KPDD TLV VLNSCAN+G LELGKWVH YLD+N I  DGFIGNALVDMYAKCG IDQA 
Sbjct: 302 VKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQAC 361

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF++M  +DVYSYTAMIVGLA+HG+  KALD+FSEM ++GIEPDEVTFVGVL+ACSH G
Sbjct: 362 WVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVG 421

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LVEEG K+F DMS +YNL+PQ EHYGCMVDL GRAGLI EA + I++MP+ PDAFV GAL
Sbjct: 422 LVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGAL 481

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           LGACKIH KVEL E VM+ + + EP  DGAY+LM+NIYSS NRW++ALKLRK MKER ++
Sbjct: 482 LGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLE 541

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
           KTPGCS +E+ G  +EF+KGDKSHPK  EIYKLLDEIM   KN+
Sbjct: 542 KTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKNN 585


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 324/581 (55%), Positives = 412/581 (70%), Gaps = 23/581 (3%)

Query: 21  QLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNE-------I 73
           QL L   S  L S KS+  LKQ H   IKT  P      L  K+I LS  +        I
Sbjct: 5   QLHLFSHS--LNSCKSISHLKQIHGVAIKT--PSLSLPNLIPKLIFLSSSSSSSPDLFYI 60

Query: 74  ENLSLQNPQ-----VYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKAC 127
            ++ L +       + L N II+ +S N+  L  +    EML+ GL P+ +T+P VLKA 
Sbjct: 61  RSILLTHSHDAQFCLSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKAL 120

Query: 128 WQSQSLRVGQQVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRD 186
              Q +R GQQ+HA S+KT ++  NVYV NTLMRLY+VCG I  V K+F    H    RD
Sbjct: 121 ALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPH----RD 176

Query: 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
           LVSWTTLIQA+ K    + A+ +F +MC   LR DG  LV+VLSACS LGDL+LG K+H 
Sbjct: 177 LVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHS 236

Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
           YI  ++ ++  DVF+ NAL+DMYLKC ++ SA KVFDEMPVKNVV+WN+MI+GL ++G++
Sbjct: 237 YIR-HYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRY 295

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
           +EALD FR MQ  G+KPD+ TLV VLNSCAN+G LE+GKWVH Y+ +NHI  D F+GNAL
Sbjct: 296 REALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNAL 355

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           +DMYAKCG ID+AF VF SMK RDVYSYTAMI GLA+HG+A  A  +FSEM +VGIEP+E
Sbjct: 356 LDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNE 415

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           VTF+G+L ACSH GLV EG K+F  MS  Y L+PQ EHYGCM+DL GRAGL++EA ++I 
Sbjct: 416 VTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIH 475

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546
            M + PD F  GALLGAC+IH  V++ E VM+ L   +P+ +G YILMTN+YSS +RWK+
Sbjct: 476 KMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKD 535

Query: 547 ALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
           ALK+RK MK +K++KTPGCSL+EV G  +EFRKGDKSHP++
Sbjct: 536 ALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSHPRS 576


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/586 (43%), Positives = 366/586 (62%), Gaps = 20/586 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKTG---SPQHQTQI-----LYDKIISLSRGNEIENLSLQNPQ 82
           LE   ++ QLKQ HA +++T     P   ++I     L+D   SL     + N  + NP 
Sbjct: 47  LEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSG-SLPYARLVFN-QIPNPT 104

Query: 83  VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
            +  N II+  +N N P +AI  Y+ M+++GL P+ +T P + K+C     L  G+Q+H 
Sbjct: 105 TFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHC 161

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           +S K    S+ Y+ NTLM +Y+ CG + +  K+F         + +VSW T+I AY + D
Sbjct: 162 HSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFD----KMVNKSVVSWATMIGAYAQWD 217

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
            P EAI  F  M  A+++P+ + LV VL+AC++  DL    ++H+YI +          +
Sbjct: 218 LPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFH--TVL 275

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            +AL+D+Y KCG  P AR +F++MP KN+  WN MI G      ++EAL +F  MQ  G+
Sbjct: 276 TSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGV 335

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           K D  T+  +L +C ++G LELGKW+H Y++K  I  D  +G ALVDMYAKCG I+ A  
Sbjct: 336 KGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMR 395

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF+ M  +DV ++TA+IVGLA+ G+  KAL++F EM    ++PD +TFVGVL+ACSHAGL
Sbjct: 396 VFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGL 455

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           V EG  +F  M   Y +QP  EHYGCMVD+ GRAG I EA DLI++MP+ PD FV   LL
Sbjct: 456 VNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLL 515

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
            AC+IH  + +AE   + L+  +P+  G Y+L++NIYSS   W+ A K+R+ M ER +KK
Sbjct: 516 SACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKK 575

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            PGCS +EV G  +EF KGD SHP++ EIY+ LD++M + K+ GY+
Sbjct: 576 PPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYV 621


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 245/629 (38%), Positives = 387/629 (61%), Gaps = 51/629 (8%)

Query: 21  QLSLLHQSPRL---ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL- 76
            L  L Q+P L   ++ KS+ QLKQ H+  I TG   +   I+  +II+    +E+ ++ 
Sbjct: 13  HLPSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNP--IVPAQIIAFCCKHELGDME 70

Query: 77  -------SLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACW 128
                  ++  P  +++N +I+  S    P  A+++Y EML +G++P+ YT P++LK   
Sbjct: 71  YARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFT 130

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
           +  +++ G+++H + +K    SNV+V N L+ LY++ G +     +F       ++ D+V
Sbjct: 131 RDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFD----RSSKGDVV 186

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
           +W  +I  Y +     E++  F +M +  + P  + LV VLSACSKL DL++G ++HRY+
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV 246

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ--- 305
            D    + P   + NALIDMY  CG++ +A  +FD M  ++V+SW +++ G T+ GQ   
Sbjct: 247 KD--LKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGL 304

Query: 306 ----------------------------FKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
                                       FKE L +FR MQ   +KPD+FT+V +L +CA+
Sbjct: 305 ARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAH 364

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +G LELG+W+  Y+DKN I  D F+GNAL+DMY  CG +++A  +F +M  RD  S+TA+
Sbjct: 365 LGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAV 424

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I GLAI+G   +ALD+FS+M +  I PDEVT +GVL AC+H+G+V++G K F  M+  + 
Sbjct: 425 IFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHG 484

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           ++P   HYGCMVDL GRAG ++EA ++IK+MP+ P++ VWG+LLGAC++H   E+AE+  
Sbjct: 485 IEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAA 544

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           + ++  EPE    Y+L+ NIY++ NRW++  ++RK M +R +KKTPGCSL+E+ G  +EF
Sbjct: 545 QQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEF 604

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             GD+ HP++ EIY  LDE+    K  GY
Sbjct: 605 VAGDQVHPQSKEIYSKLDEMSVDLKFAGY 633


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/581 (42%), Positives = 364/581 (62%), Gaps = 21/581 (3%)

Query: 37  VGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIENLSL-----QNPQVYLYNF 88
           + QLKQ HA +++TG    P   ++I+     SL     ++   L      NP  Y  N 
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIV--AFCSLQESGSLQYARLVFSQIPNPTSYTCNS 58

Query: 89  IIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           II+  ++ N   EA+  Y+EM+++GL+P+ YT P + K+C  S     G+Q+H +S K  
Sbjct: 59  IIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLG 115

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
             S+ Y  NTLM +Y+ CG + +  K+F         + +VSW T+I  + + D P EA+
Sbjct: 116 FASDTYAQNTLMNMYSNCGCLVSARKVFD----KMEDKTVVSWATMIGVHAQWDQPNEAV 171

Query: 208 LSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
             F  M ++ N++P+ + LV VL+AC++  DL++  +IH YI ++ F     V ++  L+
Sbjct: 172 RLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFG--RHVVLNTVLM 229

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           D+Y KCG +  AR +FD+   KN+ SWN MI G      ++EAL +FR MQ  G+K D  
Sbjct: 230 DVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKV 289

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T+  +L +C ++G LELGKW+H Y+ K  I+ D  +G ALVDMYAKCG I+ A  VF  M
Sbjct: 290 TMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEM 349

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             +DV ++TA+I+GLA+ G+A  AL  F EM   G++PD +TFVGVL+ACSHAG V+EG 
Sbjct: 350 PEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGI 409

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
            HF  MS  Y +QP  EHYG +VD+ GRAG I EA +LIKSMP+ PD FV G LLGAC+I
Sbjct: 410 SHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRI 469

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H  +E AE   + L+  +P   G Y+L++NIY S  +W+EA + R+ M ER ++K PGCS
Sbjct: 470 HGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCS 529

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +EV+G  +EF KGD SH ++ EI ++L++++ + KN GY+
Sbjct: 530 QIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYV 570


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/623 (39%), Positives = 385/623 (61%), Gaps = 43/623 (6%)

Query: 24  LLHQSPRLE---SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII---SLSRGNEIENL- 76
           +L + P L+     +S+   KQ HA IIKTG   H T     K+I   ++SR  +I    
Sbjct: 26  VLQEHPSLKLLSKCQSIRTFKQIHAHIIKTG--LHNTLFALSKLIEFSAVSRSGDISYAI 83

Query: 77  ----SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
               S++ P ++++N +I+ LS + +P  A+  +  M+  G+ PN+YT P++LK+C +  
Sbjct: 84  SLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLA 143

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF---HFRQ--------- 179
           S   G+Q+HA+ +K   +S+V++  +L+ +YA  G +     +F   +FR          
Sbjct: 144 SAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIA 203

Query: 180 ---------------HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI 224
                               +D+VSW  +I  Y +M    EA+L F DM +AN+ P+   
Sbjct: 204 GYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNEST 263

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           +V VLSAC++   L LG  +  +I D    L  ++ + NALIDMY KCG++ +AR++FD+
Sbjct: 264 IVSVLSACAQSNALDLGNSMRSWIEDR--GLCSNLKLVNALIDMYSKCGDLQTARELFDD 321

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           M  ++V+SWN MI G TH   +KEAL +FR M   G++P + T + +L SCA++G ++LG
Sbjct: 322 MLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG 381

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           KW+H Y++KN  +    +  +L+D+YAKCG I  A  VF  MK + + S+ AMI GLA+H
Sbjct: 382 KWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMH 441

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G+A KA ++FS+MS  GIEP+E+TFVG+LSAC HAGLV+ G + F  M + Y + P+++H
Sbjct: 442 GQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQH 501

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           YGCM+DL GRAGL  EA  L+++M + PD  +WG+LLGAC+ H +VEL E+V E L   E
Sbjct: 502 YGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELE 561

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           P+  GAY+L++NIY+   +W +  ++R ++ +R +KK PGC+ +EV    +EF  GDK H
Sbjct: 562 PDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVH 621

Query: 585 PKTLEIYKLLDEIMHQSKNHGYI 607
           P++ +IY++L+E+  Q K  G++
Sbjct: 622 PQSEDIYRMLEEVDEQLKVFGFV 644


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/596 (39%), Positives = 373/596 (62%), Gaps = 16/596 (2%)

Query: 22  LSLLHQSPR---LESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIEN 75
           +SL  ++P+   LE  K++  L + HA +IKT     P+    +L    I L    +   
Sbjct: 19  ISLFPENPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAV 78

Query: 76  ---LSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
                +  P    YN +I+  +   +P EAI L++EM    + P+ +T P +LK C + Q
Sbjct: 79  SIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQ 138

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
           +L  G+Q+HA  MK    S+ +V NTL+ +YA CG ++   ++F       ++R++ +W 
Sbjct: 139 ALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFD----EMSERNVRTWN 194

Query: 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
           ++   Y K     E +  F +M + ++R D + LV VL+AC +L DL LG  I+RY+ + 
Sbjct: 195 SMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEK 254

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
               +P +    +L+DMY KCG + +AR++FD+M  ++VV+W++MI+G +   + +EALD
Sbjct: 255 GLKGNPTLI--TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALD 312

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           +F  MQ   + P++ T+V +L+SCA +G LE GKWVH ++ K  +     +G AL+D YA
Sbjct: 313 LFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYA 372

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           KCG ++ +  VF  M  ++V S+T +I GLA +G+  KAL+ F  M +  +EP++VTF+G
Sbjct: 373 KCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIG 432

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           VLSACSHAGLV+EG   F+ MSR + ++P+ EHYGCMVD+ GRAGLI EA   IK+MP+ 
Sbjct: 433 VLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQ 492

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P+A +W  LL +CK+H  VE+ E  ++ L+  EP   G YIL++NIY+S  RW++ALK+R
Sbjct: 493 PNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVR 552

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +MKE+ +KKTPGCSL+E+ G  +EF   D  H ++ EIY  ++++M Q K+ GY+
Sbjct: 553 GEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYV 608


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/616 (38%), Positives = 376/616 (61%), Gaps = 48/616 (7%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SLQNPQ 82
           LE+ +S+ QL+Q H   IK G   +   +L +++++    +E  +          +  P 
Sbjct: 25  LETCESMDQLQQVHCQAIKKG--LNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPN 82

Query: 83  VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           ++++N +I+  S  + P   ++LY EML +G+ P+ YT P++ K   +  +L  G+Q+H 
Sbjct: 83  LFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHG 142

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           + +K  L  NV+V   L+++Y +CG +     +F     P+A  D+++W  +I AY K+ 
Sbjct: 143 HVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDV--CPKA--DVITWNMIISAYNKVG 198

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
              E+   F  M    + P  + LV+VLSACSKL DL  G K+H Y+ +    +  ++ +
Sbjct: 199 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN--CKVESNLVL 256

Query: 262 HNALIDMYLKCGNIPSA-------------------------------RKVFDEMPVKNV 290
            NA+IDMY  CG + SA                               R  FD+MP K+ 
Sbjct: 257 ENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 316

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           VSW +MI G     +FKEAL++FR MQ   +KPD+FT+V VL +CA++G LELG+W+ TY
Sbjct: 317 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 376

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           +D+N I  D F+ NAL+DMY KCG +D+A  +FR M  RD +++TAMIVGLA++G   KA
Sbjct: 377 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 436

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           LD+FS M +  I PDE+T++GVLSAC+H GLV++G K+FL M+  + ++P   HYGC+VD
Sbjct: 437 LDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVD 496

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           L  RAG ++EA ++I++MP+  ++ VWGALL  C+++ + ++AE+V++ ++  EP+    
Sbjct: 497 LLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAV 556

Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
           Y+L+ NIY++  RW +  +LR+ M ++ +KKTPGCSL+E+ G  +EF  GD+SHP+T  I
Sbjct: 557 YVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNI 616

Query: 591 YKLLDEIMHQSKNHGY 606
              LD++    K  GY
Sbjct: 617 DAKLDKMTQDLKLAGY 632


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/626 (40%), Positives = 375/626 (59%), Gaps = 48/626 (7%)

Query: 24  LLHQSPRL---ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--- 77
           LL   P L    + KS   LKQ H+ IIKTG   H TQ    K+I     +   NLS   
Sbjct: 29  LLQNHPSLTLLSTCKSFQNLKQIHSQIIKTG--LHNTQFALSKLIEFCAISPFGNLSYAL 86

Query: 78  -----LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
                ++ P  +++N +I+  S +++P+ AI  Y  ML+ G+ PN+YT P++LK+C +  
Sbjct: 87  LLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVG 146

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------------- 176
           + + G+Q+H + +K  L S+ +V  +L+ +YA  G +     +F                
Sbjct: 147 ATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALIT 206

Query: 177 --------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
                         F + P   RD VSW  +I  Y +     EA+  F +M +AN+ P+ 
Sbjct: 207 GYTLRGCLDDARRLFEEIPV--RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
             +V VLSAC++ G L LG  +  +I D+   L  ++ + NALIDMY KCG++  AR +F
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDH--GLGSNLRLVNALIDMYSKCGDLDKARDLF 322

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
           + +  K+++SWN MI G +H   +KEAL +FR+MQ   ++P+D T V +L +CA +G L+
Sbjct: 323 EGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALD 382

Query: 343 LGKWVHTYLDKNHIN-TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
           LGKW+H Y+DK  +  T+  +  +L+DMYAKCG I+ A  VF  MK + + S+ AMI GL
Sbjct: 383 LGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGL 442

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
           A+HG A  AL++F +M   G EPD++TFVGVLSACSHAGLVE G + F  M   Y++ P+
Sbjct: 443 AMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPK 502

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
            +HYGCM+DL GRAGL  EA  L+K+M + PD  +WG+LLGAC++H  VEL E   ++L 
Sbjct: 503 LQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLF 562

Query: 522 RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581
             EPE  GAY+L++NIY++  RW +  ++R K+ ++ +KK PGCS +EV    +EF  GD
Sbjct: 563 ELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGD 622

Query: 582 KSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K H ++ +IYK+LDEI    +  G++
Sbjct: 623 KVHEQSQDIYKMLDEIDQLLEKAGHV 648


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/616 (38%), Positives = 375/616 (60%), Gaps = 48/616 (7%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SLQNPQ 82
           LE+ +S+ QL+Q H   IK G   +   +L +++++    +E  +          +  P 
Sbjct: 46  LETCESMDQLQQVHCQAIKKG--LNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPN 103

Query: 83  VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           ++++N +I+  S  + P   ++LY EML +G+ P+ YT P++ K   +  +L  G+Q+H 
Sbjct: 104 LFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHG 163

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           + +K  L  NV+V   L+++Y +CG +     +F     P+A  D+++W  +I AY K+ 
Sbjct: 164 HVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDV--CPKA--DVITWNMIISAYNKVG 219

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
              E+   F  M    + P  + LV+VLSACSKL DL  G K+H Y+ +    +  ++ +
Sbjct: 220 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN--CKVESNLVL 277

Query: 262 HNALIDMYLKCGNIPSA-------------------------------RKVFDEMPVKNV 290
            NA+IDMY  CG + SA                               R  FD+MP K+ 
Sbjct: 278 ENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 337

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           VSW +MI G     +FKEAL++FR MQ   +KPD+FT+V VL +CA++G LELG+W+ TY
Sbjct: 338 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 397

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           +D+N I  D F+ NAL+DMY KCG +D+A  +FR M  RD +++TAMIVGLA++G   KA
Sbjct: 398 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 457

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           LD+FS M +  I PDE+T++GVLSAC+H GLV++G K+FL M+  + ++P   HYGC+VD
Sbjct: 458 LDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVD 517

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           L  RAG ++EA ++I++MP+  ++ VWGALL  C+++ + ++AE+V++ ++  EP+    
Sbjct: 518 LLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAV 577

Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
           Y+L+ NIY++  RW +  +LR+ M ++ +KK PGCSL+E+ G  +EF  GD+SHP+T  I
Sbjct: 578 YVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNI 637

Query: 591 YKLLDEIMHQSKNHGY 606
              LD++    K  GY
Sbjct: 638 DAKLDKMTQDLKLAGY 653


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/531 (43%), Positives = 348/531 (65%), Gaps = 7/531 (1%)

Query: 78  LQNPQVYLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           ++ P ++L+N +I+ L SN    +AI  Y  M  +G LPN +T P+VLKAC +   L++G
Sbjct: 72  IKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLG 131

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            ++H   +K     +V+V  +L+ LYA CG ++  HK+F         +++VSWT +I  
Sbjct: 132 VKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFD----DIPDKNVVSWTAIISG 187

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y+ +    EAI  F  + + NL PD   +V VLSAC++LGDL+ G  IH+ I +    + 
Sbjct: 188 YIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIME--MGMV 245

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            +VF+  +L+DMY KCGN+  AR VFD MP K++VSW +MI G    G  KEA+D+F +M
Sbjct: 246 RNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQM 305

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           Q   +KPD +T+V VL++CA +G LELG+WV   +D+N    +  +G AL+D+YAKCG +
Sbjct: 306 QRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSM 365

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
            +A+ VF+ MK +D   + A+I GLA++G    +  +F ++ ++GI+PD  TF+G+L  C
Sbjct: 366 SRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGC 425

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           +HAGLV+EG ++F  M R ++L P  EHYGCMVDL GRAGL+ EA  LI++MP+  +A V
Sbjct: 426 THAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIV 485

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           WGALLGAC+IH   +LAE+ ++ L+  EP   G Y+L++NIYS+  +W EA K+R  M E
Sbjct: 486 WGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNE 545

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           ++++K PGCS +EV G  +EF  GDK HP + +IY  LDE+  + K  GY+
Sbjct: 546 KRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYV 596


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/611 (40%), Positives = 369/611 (60%), Gaps = 53/611 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQ 82
           L++ KS+  LKQ    I++TG   HQ+    +K +       I NL         +  P 
Sbjct: 39  LKNCKSMQHLKQIQTQILRTGF--HQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPG 96

Query: 83  VYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           +++YN +I+  + N +  +A+ L+R++  +GL P+ +T P+V KA      +R G++V+ 
Sbjct: 97  LFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYG 156

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           + +K+ L  + YV N+LM +YA  G ++ + ++F        QRD+VSW  LI  YVK  
Sbjct: 157 FVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFE----EMPQRDVVSWNVLISGYVKCR 212

Query: 202 YPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
              +A+  F  M Q ++LRP+   +V  LSAC  L  L LG +IHRY+ +    L   + 
Sbjct: 213 RYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQ---LGFTIK 269

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ--------------- 305
           I NAL+DMY KCG++  AR++F++MP+K V+ W SM++G  + GQ               
Sbjct: 270 IGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRD 329

Query: 306 ----------------FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
                           F +A+ +FR MQ   + PD FTLV +L  CA +G LE GKW+H 
Sbjct: 330 VVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHG 389

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           Y+D+N I  D  +G AL++MYAKCG I+++  +F  +K +D  S+T++I GLA++GK  K
Sbjct: 390 YIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSK 449

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           AL++F+EM Q G++PD++TF+GVLSACSH GLVEEG KHF  M+ VY ++P+ EHYGC++
Sbjct: 450 ALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLI 509

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFV---WGALLGACKIHAKVELAEIVMENLVRFEPE 526
           DL GRAG + EA +LI+  P V +  +   +GALL AC+ H  VE+ E V + LV  E  
Sbjct: 510 DLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESG 569

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
               + L+ NIY+S +RW++  K+R+KMK+  VKK PGCS VEV G  +EF  GD SHP+
Sbjct: 570 DSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPE 629

Query: 587 TLEIYKLLDEI 597
             EIY +LD I
Sbjct: 630 MREIYSMLDSI 640


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/576 (43%), Positives = 347/576 (60%), Gaps = 15/576 (2%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL------QNPQVYLYNFIIQC 92
            LK  HA +++ G    +   L +K++  S      N S       + P ++L+N +I+ 
Sbjct: 25  HLKHIHAALLRLG--LDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRG 82

Query: 93  LS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
           L  N    E+I +Y  M  +GL P+++T P+VLKAC +     +G ++H+  +K    ++
Sbjct: 83  LVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEAD 142

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
            +V  +L+ LY  CG I    K+F         ++  SWT  I  YV +    EAI  F 
Sbjct: 143 AFVKISLINLYTKCGFIDNAFKVFD----DIPDKNFASWTATISGYVGVGKCREAIDMFR 198

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            + +  LRPD   LV VLSAC + GDL  G  I  YIT+N   +  +VF+  AL+D Y K
Sbjct: 199 RLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITEN--GMVRNVFVATALVDFYGK 256

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           CGN+  AR VFD M  KN+VSW+SMI G    G  KEALD+F +M   GLKPD + +V V
Sbjct: 257 CGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGV 316

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L SCA +G LELG W    ++ N    +  +G AL+DMYAKCGR+D+A+ VFR M+ +D 
Sbjct: 317 LCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDR 376

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
             + A I GLA+ G    AL +F +M + GI+PD  TFVG+L AC+HAGLVEEG ++F  
Sbjct: 377 VVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNS 436

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           M  V+ L P+ EHYGCMVDL GRAG + EA  LIKSMP+  +A VWGALLG C++H   +
Sbjct: 437 MECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQ 496

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           L E+V++ L+  EP   G Y+L++NIY++ ++W+EA K+R  M ER VKK PG S +EV 
Sbjct: 497 LVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVD 556

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           G  ++F  GD SHP + +IY  L E+    K  GY+
Sbjct: 557 GVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYV 592


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/611 (39%), Positives = 364/611 (59%), Gaps = 49/611 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SLQNPQ 82
           LE  KS+ QLKQ  + ++ TG  +        ++I+    +E  +L        + +NP 
Sbjct: 13  LEKCKSISQLKQIQSQMVLTGLIEDG--FASSRLIAFCAISEWRDLDYCTNILFNTRNPN 70

Query: 83  VYLYNFIIQC-LSNANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            + +N  I+  L + NP EA+ LY+ +L   G  P+ YT P + KAC +   +R+G ++ 
Sbjct: 71  TFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEIL 130

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            + +     S+++V N ++ L   CG +    K+F         RDLVSW ++I  YV+ 
Sbjct: 131 GHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFD----KSCVRDLVSWNSMINGYVRR 186

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
            +  EA+  + +M    ++PD + ++ V+S+C++L DL LG + H YI +N   L+  V 
Sbjct: 187 GWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLT--VP 244

Query: 261 IHNALIDMYLKCGNIPSARKVFD-------------------------------EMPVKN 289
           + NAL+DMY+KCGN+ SARK+FD                               EMP K+
Sbjct: 245 LANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKD 304

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           VV WN+MI G  H  + KEAL +F  MQ + + PD+ T+V  L++C+ +G L++G W+H 
Sbjct: 305 VVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHH 364

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           Y++K+ ++ +  +G AL+DMYAKCG+I +A  VF+ +  R+  ++TA+I GLA+HG A  
Sbjct: 365 YIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHG 424

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           A+  FSEM    + PDEVTF+G+LSAC H GLVEEG K+F  MS  +NL P+ +HY CMV
Sbjct: 425 AIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMV 484

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL GRAGL+ EA +LIKSMP+  DA VWGAL  AC+IH  V + E     L++ +P   G
Sbjct: 485 DLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSG 544

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y+L+ N+Y     WKEA K RK M++R V+KTPGCS +EV G  YEF   DKSHP++ +
Sbjct: 545 IYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQ 604

Query: 590 IYKLLDEIMHQ 600
           IY+ L ++  Q
Sbjct: 605 IYECLIQLTRQ 615



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 214/464 (46%), Gaps = 72/464 (15%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+  YREM ++G+ P+  T+  V+ +C Q + L +G++ H Y  +  L   V + N LM
Sbjct: 191 EALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALM 250

Query: 160 RLYAVCGLIKAVHKLFH-----------------------------FRQHPQAQRDLVSW 190
            +Y  CG +++  KLF                              F + P   +D+V W
Sbjct: 251 DMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPD--KDVVPW 308

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
             +I  YV  +   EA+  F +M   N+ PD + +V  LSACS+LG L +GI IH YI  
Sbjct: 309 NAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK 368

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
           +   LS +V +  ALIDMY KCG I  A +VF E+P +N ++W ++I+GL   G    A+
Sbjct: 369 HE--LSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAI 426

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDM 369
             F  M    + PD+ T + +L++C + G +E G K+      K +++      + +VD+
Sbjct: 427 AYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDL 486

Query: 370 YAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEV 427
             + G +++A  + +SM    D   + A+     IHG         S++ Q  ++P D  
Sbjct: 487 LGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQ--MDPHDSG 544

Query: 428 TFVGVLSACSHAGLVEE-----------------GCKHFLDMSRVYNL------QPQTEH 464
            +V + +    A + +E                 GC        VY         PQ+E 
Sbjct: 545 IYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQ 604

Query: 465 -YGCMVDLFGRAGLIREALDLIKSMPLVP---DAFVWGALLGAC 504
            Y C++ L          L+L++  P+ P   D  ++G+  G C
Sbjct: 605 IYECLIQL-------TRQLELVECTPVFPIFGDNSLFGSDFGRC 641


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/540 (42%), Positives = 340/540 (62%), Gaps = 24/540 (4%)

Query: 79  QNPQVYLYNFIIQC-LSNANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +NP  + +N  I+  L + NP EA+ LY+ +L   G  P+ YT P + KAC +   +R+G
Sbjct: 39  RNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMG 98

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            ++  + +     S+++V N ++ L   CG +    K+F         RDLVSW ++I  
Sbjct: 99  SEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFD----KSCVRDLVSWNSMING 154

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           YV+  +  EA+  + +M    ++PD + ++ V+S+C++L DL LG + H YI +N   L+
Sbjct: 155 YVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLT 214

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFD----------------EMPVKNVVSWNSMIAGL 300
             V + NAL+DMY+KCGN+ SARK+FD                EMP K+VV WN+MI G 
Sbjct: 215 --VPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGY 272

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
            H  + KEAL +F  MQ + + PD+ T+V  L++C+ +G L++G W+H Y++K+ ++ + 
Sbjct: 273 VHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNV 332

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            +G AL+DMYAKCG+I +A  VF+ +  R+  ++TA+I GLA+HG A  A+  FSEM   
Sbjct: 333 ALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDN 392

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
            + PDEVTF+G+LSAC H GLVEEG K+F  MS  +NL P+ +HY CMVDL GRAGL+ E
Sbjct: 393 SVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEE 452

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540
           A +LIKSMP+  DA VWGAL  AC+IH  V + E     L++ +P   G Y+L+ N+Y  
Sbjct: 453 AEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGE 512

Query: 541 KNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
              WKEA K RK M++R V+KTPGCS +EV G  YEF   DKSHP++ +IY+ L ++  Q
Sbjct: 513 AEMWKEAGKXRKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQ 572


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/616 (37%), Positives = 369/616 (59%), Gaps = 48/616 (7%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SLQNPQ 82
           LE  KS+ QLKQ H+  IK G       +   ++I+    +E   +        ++  P 
Sbjct: 14  LEKCKSMYQLKQIHSHTIKMGLSS--DPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPT 71

Query: 83  VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           ++++N +I+  S  N P   +++Y  ML   + P+ +T P++LK   ++ +L+ G+ +  
Sbjct: 72  LFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLN 131

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           +++K    SN++V    + ++++C L+    K+F          ++V+W  ++  Y ++ 
Sbjct: 132 HAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGD----AWEVVTWNIMLSGYNRVK 187

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
              ++ + F +M +  + P+ + LV++LSACSKL DL  G  I++YI  N   +  ++ +
Sbjct: 188 QFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYI--NGGIVERNLIL 245

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ---------------- 305
            N LIDM+  CG +  A+ VFD M  ++V+SW S++ G  + GQ                
Sbjct: 246 ENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDY 305

Query: 306 ---------------FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
                          F EAL +FR MQ   +KPD+FT+V +L +CA++G LELG+WV TY
Sbjct: 306 VSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTY 365

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           +DKN I  D F+GNAL+DMY KCG + +A  VF+ M  +D +++TAMIVGLAI+G   +A
Sbjct: 366 IDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEA 425

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           L +FS M +  I PDE+T++GVL AC+HAG+VE+G   F+ M+  + ++P   HYGCMVD
Sbjct: 426 LAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVD 485

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           L GRAG + EA ++I +MP+ P++ VWG+LLGAC++H  V+LAE+  + ++  EPE    
Sbjct: 486 LLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAV 545

Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
           Y+L+ NIY++  RW+   ++RK M ER +KKTPGCSL+E+ G  YEF  GD+SHP++ EI
Sbjct: 546 YVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEI 605

Query: 591 YKLLDEIMHQSKNHGY 606
           Y  L+ +M      GY
Sbjct: 606 YAKLENMMQDLIKAGY 621


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/531 (42%), Positives = 342/531 (64%), Gaps = 7/531 (1%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           ++ P ++L+N +I+ L + +  + AI LY  M   G LPN +T+P+VLKAC +   +R+G
Sbjct: 74  VKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLG 133

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            ++H+  +K     +V+V  +L+ LY  C       K+F         +++VSWT +I  
Sbjct: 134 LKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFD----DIPDKNVVSWTAIITG 189

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y+   +  EAI +F  + +  L+PD   LV VL+AC++LGD + G  I RYI+D+   + 
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDS--GMG 247

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            +VF+  +L+DMY+KCGN+  A  +F  MP K++VSW++MI G    G  ++ALD+F +M
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM 307

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           Q   LKPD +T+V VL++CA +G L+LG W  + +D+N   ++  +G AL+DMY+KCG +
Sbjct: 308 QSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSV 367

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
            QA+ +F +MK +D   + AM+VGL+++G A     +FS + + GI PDE TF+G+L  C
Sbjct: 368 TQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGC 427

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           +H G V EG + F +M RV++L P  EHYGCMVDL GRAGL+ EA  LI +MP+ P+A V
Sbjct: 428 THGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVV 487

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           WGALLG CK+H    LAE V++ L+  EP   G Y+ ++NIYS  +RW+EA K+R  MKE
Sbjct: 488 WGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKE 547

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           ++++K   CS +E+ G  +EF  GDKSH  + +IY  LDE+  + K  G++
Sbjct: 548 QQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHV 598


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/531 (42%), Positives = 342/531 (64%), Gaps = 7/531 (1%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           ++ P ++L+N +I+ L + +  + AI LY  M   G LPN +T+P+VLKAC +   +R+G
Sbjct: 74  VKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLG 133

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            ++H+  +K     +V+V  +L+ LY  C       K+F         +++VSWT +I  
Sbjct: 134 LKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFD----DIPDKNVVSWTAIITG 189

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y+   +  EAI +F  + +  L+PD   LV VL+AC++LGD + G  I RYI+D+   + 
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDS--GMG 247

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            +VF+  +L+DMY+KCGN+  A  +F  MP K++VSW++MI G    G  ++ALD+F +M
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM 307

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           Q   LKPD +T+V VL++CA +G L+LG W  + +D+N   ++  +G AL+DMY+KCG +
Sbjct: 308 QSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSV 367

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
            QA+ +F +MK +D   + AM+VGL+++G A     +FS + + GI PDE TF+G+L  C
Sbjct: 368 TQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGC 427

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           +H G V EG + F +M RV++L P  EHYGCMVDL GRAGL+ EA  LI +MP+ P+A V
Sbjct: 428 THGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVV 487

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           WGALLG CK+H    LAE V++ L+  EP   G Y+ ++NIYS  +RW+EA K+R  MKE
Sbjct: 488 WGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKE 547

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           ++++K   CS +E+ G  +EF  GDKSH  + +IY  LDE+  + K  G++
Sbjct: 548 QQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHV 598


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/646 (37%), Positives = 380/646 (58%), Gaps = 61/646 (9%)

Query: 3   SPLTVASGS------------RYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKT 50
           SPLTV S S             Y+ I     LSLLH    L+S      L+  HA +IK 
Sbjct: 6   SPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQS------LRIIHAQMIKI 59

Query: 51  GSPQHQTQILYDKIISLS-RGNEIENL--------SLQNPQVYLYNFIIQCLS-NANPLE 100
           G   H T     K+I         E L        ++Q P + ++N + +  + +++P+ 
Sbjct: 60  G--LHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVS 117

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+ LY  M+  GLLPN+YT P+VLK+C +S++ + GQQ+H + +K     ++YV  +L+ 
Sbjct: 118 ALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLIS 177

Query: 161 LYAVCGLIKAVHKLFHFRQH-------------------PQAQR--------DLVSWTTL 193
           +Y   G ++  HK+F    H                     AQ+        D+VSW  +
Sbjct: 178 MYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAM 237

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I  Y +     EA+  F DM + N+RPD   +V V+SAC++ G + LG ++H +I D+ F
Sbjct: 238 ISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGF 297

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
               ++ I NALID+Y KCG + +A  +F+ +P K+V+SWN++I G TH   +KEAL +F
Sbjct: 298 G--SNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLF 355

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK--NHINTDGFIGNALVDMYA 371
           + M   G  P+D T++ +L +CA++G +++G+W+H Y+DK    +     +  +L+DMYA
Sbjct: 356 QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYA 415

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           KCG I+ A  VF S+  + + S+ AMI G A+HG+A  + D+FS M ++GI+PD++TFVG
Sbjct: 416 KCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVG 475

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           +LSACSH+G+++ G   F  M++ Y + P+ EHYGCM+DL G +GL +EA ++I  M + 
Sbjct: 476 LLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEME 535

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           PD  +W +LL ACK+H  VEL E   ENL++ EPE  G+Y+L++NIY+S  RW E  K R
Sbjct: 536 PDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTR 595

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
             + ++ +KK PGCS +E+    +EF  GDK HP+  EIY +L+E+
Sbjct: 596 ALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 641


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/651 (37%), Positives = 374/651 (57%), Gaps = 52/651 (7%)

Query: 1   MASPLTVASGSRYNDINTFQQLSLLHQSPRL---ESSKSVGQLKQFHAFIIKTGSPQHQT 57
           +ASP++      ++D +      L+H  P L    + K++  LKQ H+ IIKTG   H T
Sbjct: 4   LASPVSTLQVLSFSDPS--PPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTG--LHNT 59

Query: 58  QILYDKIISLSRGNEIENLS--------LQNPQVYLYNFIIQCLSNA-NPLEAIALYREM 108
                K+I     +   +LS        ++NP   ++N +I+ LS++ +P  A+  Y  M
Sbjct: 60  HFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHM 119

Query: 109 LIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI 168
           +  G  PN YT P + K+C + +    G+QVHA+ +K  L  N +V  +L+ +YA  G +
Sbjct: 120 ISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGEL 179

Query: 169 KAVHKLFH-----------------------------FRQHPQAQRDLVSWTTLIQAYVK 199
                +F                              F + P   RD+VSW  +I  Y +
Sbjct: 180 VNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPV--RDVVSWNAMISGYAQ 237

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD-LSLGIKIHRYITDNHFNLSPD 258
                EA+  F +M +A + P+   ++ VLSAC++ G  L LG  +  +I D    L  +
Sbjct: 238 SGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDR--GLGSN 295

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           + + N LIDMY+KCG++  A  +F+++  KNVVSWN MI G TH   +KEAL +FRRM  
Sbjct: 296 IRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQ 355

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG--NALVDMYAKCGRI 376
             + P+D T + +L +CAN+G L+LGKWVH Y+DKN  +    +    +L+DMYAKCG +
Sbjct: 356 SNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDL 415

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
             A  +F  M  + + ++ AMI G A+HG    AL +FS M+  G  PD++TFVGVL+AC
Sbjct: 416 AVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTAC 475

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
            HAGL+  G ++F  M + Y + P+  HYGCM+DLFGRAGL  EA  L+K+M + PD  +
Sbjct: 476 KHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAI 535

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W +LLGAC+IH ++ELAE V ++L   EPE   AY+L++NIY+   RW++  K+R ++ +
Sbjct: 536 WCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLND 595

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            ++KK PGCS +EV    +EF  GDK HP++ EIYK+LDEI  + +  G++
Sbjct: 596 NRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFV 646


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/610 (38%), Positives = 364/610 (59%), Gaps = 49/610 (8%)

Query: 21  QLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLS-RGNEIENL--- 76
            LSLLH    L+S      L+  HA +IKTG   H T     K+I  S      + L   
Sbjct: 5   SLSLLHNCKTLQS------LRIIHAKMIKTG--LHNTNYALSKLIEFSVLSPHFDGLTYA 56

Query: 77  -----SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQS 130
                S+Q P + ++N + +  + +++P+ A+ LY  M+  GL+PN+YT P++LKAC +S
Sbjct: 57  ISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKS 116

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH---------- 180
           ++ R GQQ+H + +K     ++YV  +L+ +Y   G  +   K+F    H          
Sbjct: 117 KAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALI 176

Query: 181 ---------PQAQR--------DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM 223
                      AQ+        D+VSW  LI  Y +     EA+  F +M + N++PD  
Sbjct: 177 KGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDES 236

Query: 224 ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
            +V VLSAC++   + LG ++H +I D+ F    ++ I NALID+Y+KCG + +A  +F+
Sbjct: 237 TMVTVLSACAQSASIELGRQVHSWIDDHGFG--SNLKIVNALIDLYIKCGEVETASGLFE 294

Query: 284 EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLEL 343
            +  K+V+SWN++I G TH   +KEAL +F+ M   G  P++ T++ +L +CA++G +++
Sbjct: 295 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDI 354

Query: 344 GKWVHTYLDK--NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
           G+W+H Y+DK    ++    +  +L+DMYAKCG I+ A  VF SM  R + S+ AMI G 
Sbjct: 355 GRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGF 414

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
           A+HG+A  A DIFS M + GIEPD++TFVG+LSACSH+G+++ G   F  M+  Y + P+
Sbjct: 415 AMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPK 474

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
            EHYGCM+DL G +GL +EA ++I SM + PD  +W +LL ACK+H  VEL E   +NL+
Sbjct: 475 LEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLI 534

Query: 522 RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581
           + EP+  G+Y+L++NIY++  RW E  K R  + ++ +KK PGCS +E+    +EF  GD
Sbjct: 535 KIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGD 594

Query: 582 KSHPKTLEIY 591
           K HP+  EIY
Sbjct: 595 KLHPRNREIY 604


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/656 (36%), Positives = 383/656 (58%), Gaps = 61/656 (9%)

Query: 3   SPLTVASGS------------RYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKT 50
           SPLTV S S             Y+ +     LSLLH    L+S      L+  HA +IKT
Sbjct: 6   SPLTVPSSSYPFHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQS------LRLIHAQMIKT 59

Query: 51  GSPQHQTQILYDKIISLSR-GNEIENL--------SLQNPQVYLYNFIIQCLS-NANPLE 100
           G   H T     K++ L       + L        ++Q P + ++N + +  + +++P+ 
Sbjct: 60  G--LHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVS 117

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+ LY  M+  GLLPN+YT P++LK+C +S++ + GQQ+H + +K     +++V  +L+ 
Sbjct: 118 ALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLIS 177

Query: 161 LYAVCGLIKAVHKLFHFRQH-------------------PQAQR--------DLVSWTTL 193
           +Y   G ++   K+F    H                     AQ+        D+VSW  +
Sbjct: 178 VYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAM 237

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I  Y +     EA+  F +M + N+RPD   +V V+SAC++ G + LG ++H +I D+ F
Sbjct: 238 ISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGF 297

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
               ++ I N+L+D+Y KCG + +A  +F+ +  K+V+SWN++I G TH   +KEAL +F
Sbjct: 298 G--SNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLF 355

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK--NHINTDGFIGNALVDMYA 371
           + M   G +P+D T++ +L +CA++G +++G+W+H Y+DK          +  +L+DMYA
Sbjct: 356 QEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYA 415

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           KCG I+ A  VF S+  + + S+ AMI G A+HG+A  A DIFS M ++GIEPD++TFVG
Sbjct: 416 KCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVG 475

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           +LSACS +G+++ G   F  M++ Y + P+ EHYGCM+DL G +GL +EA ++I +M + 
Sbjct: 476 LLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEME 535

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           PD  +W +LL ACKI   VEL E   +NL++ EPE  G Y+L++NIY++  RW E  K+R
Sbjct: 536 PDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIR 595

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             + ++ +KK PGCS +E+    +EF  GDK HP+  EIY +L+E+    +  G++
Sbjct: 596 ALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFV 651


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/532 (41%), Positives = 334/532 (62%), Gaps = 7/532 (1%)

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +  P V+ +NF+ +  S ++ P E IALY  ML  G LP+ Y+ P+VLKAC +   L  G
Sbjct: 87  IHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKG 146

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +++H+ ++K  +  +V+V N L+  ++ CG ++A   +F     P   RD+VSW ++I  
Sbjct: 147 REIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDML--PALVRDVVSWNSMISG 204

Query: 197 YVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           Y++      A+  F+++    +L PD + LV  LS C +LG L LG KIH   T + F L
Sbjct: 205 YLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVL 264

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             DVF+ ++LIDMY KCG I  ARKVFD +P +N V W SMIAG      FKEA+++FR 
Sbjct: 265 --DVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFRE 322

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           MQ  G   D  T+ CVL++C + G L  G+W+H Y ++N I  D    NAL+ MY+KCG 
Sbjct: 323 MQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGD 382

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLS 434
           I +A  +F  +   D++S++A+I GLA++G++ KAL +FS+M  +  I P+E+TF+GVL 
Sbjct: 383 IQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLC 442

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           AC+H G V++G  +F  M+++YNL P  EHYGCMVDL GRA L+ EA   I+++P+ PD 
Sbjct: 443 ACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDV 502

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            +W +LL AC+ H  +ELAE   + +   EP   GA +L++N+Y+S +RW +  ++RK M
Sbjct: 503 VIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDM 562

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             +++KK PGCS VE+ G  +E    D+SHP+   IY+ +  I    ++ G+
Sbjct: 563 ATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYETMISINKALQSKGF 614



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 36/263 (13%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           +R +F ++   NV SWN M    +      E + ++  M   G  PD+++   VL +CA 
Sbjct: 80  SRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACAR 139

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYT 395
           +  L  G+ +H+   K  ++ D F+ NAL+  ++ CG ++ A  VF  +    RDV S+ 
Sbjct: 140 LSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWN 199

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEG--------- 445
           +MI G     +   AL +F E+   G + PDEVT V  LS C   GL++ G         
Sbjct: 200 SMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTG 259

Query: 446 -------------------CKHFLDMSRVYNLQPQ--TEHYGCMVDLFGRAGLIREALDL 484
                              C    D  +V++  P   T  +  M+  + ++ L +EA++L
Sbjct: 260 SGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIEL 319

Query: 485 IKSMPL---VPDAFVWGALLGAC 504
            + M +     DA     +L AC
Sbjct: 320 FREMQIGGFAADAATIACVLSAC 342


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/592 (38%), Positives = 357/592 (60%), Gaps = 43/592 (7%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKIISLS-RGNEIENL--------SLQNPQVYLYNFI 89
            L+  HA +IKTG   H T     K+I         + L        ++Q P + ++N +
Sbjct: 5   SLRMIHAQMIKTG--LHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62

Query: 90  IQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
            +  + +++P+ A+ LY  M+  GLLPN+YT P++LK+C +S++ + GQQ+H + +K   
Sbjct: 63  FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH-------------------PQAQR---- 185
             ++YV  +L+ +Y   G ++  HK+F    H                     AQ+    
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182

Query: 186 ----DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
               D+VSW  +I  Y +     EA+  F DM + N+RPD   +V V+SAC++ G + LG
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            ++H +I D+ F    ++ I NALID+Y KCG + +A  +F+ +P K+V+SWN++I G T
Sbjct: 243 RQVHSWIDDHGF--GSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYT 300

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK--NHINTD 359
           H   +KEAL +F+ M   G  P+D T++ +L +CA++G +++G+W+H Y+DK    +   
Sbjct: 301 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANA 360

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             +  +L+DMYAKCG I+ A  VF S+  + + S+ AMI G A+HG+A  + DIFS M +
Sbjct: 361 SSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRK 420

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            GIEPD++TFVG+LSACSH+G+++ G   F  M++ Y + P+ EHYGCM+DL G +GL +
Sbjct: 421 NGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFK 480

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA ++I +M + PD  +W +LL ACK+H  VEL E   +NL++ EPE  G+Y+L++NIY+
Sbjct: 481 EAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYA 540

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           +  RW E    R  + ++ +KK PGCS +E+    +EF  GDK HP+  EIY
Sbjct: 541 TAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 592


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/549 (41%), Positives = 337/549 (61%), Gaps = 8/549 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTY 118
           +Y K  SL    ++ +  +    V  +N II   S N  P EA+AL+ EM + G+ PN+ 
Sbjct: 164 MYTKCGSLENARQVFD-RMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSS 222

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           TL  V+  C    +L  G+Q+H Y++++ + S+V V N L+ +YA CG +   HKLF   
Sbjct: 223 TLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLF--E 280

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
           + P   RD+ SW  +I  Y       EA+  F  M    ++P+ + +V VL AC+ L  L
Sbjct: 281 RMPI--RDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFAL 338

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G +IH Y   + F  S DV + NAL++MY KCGN+ SA K+F+ MP KNVV+WN++I+
Sbjct: 339 EQGQQIHGYAIRSGFE-SNDV-VGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIIS 396

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G +  G   EAL +F  MQ  G+KPD F +V VL +CA+   LE GK +H Y  ++   +
Sbjct: 397 GYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFES 456

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           +  +G  LVD+YAKCG ++ A  +F  M  +DV S+T MI+   IHG    AL +FS+M 
Sbjct: 457 NVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQ 516

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
           + G + D + F  +L+ACSHAGLV++G ++F  M   Y L P+ EHY C+VDL GRAG +
Sbjct: 517 ETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHL 576

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            EA  +IK+M L PDA VWGALLGAC+IH  +EL E   ++L   +P+  G Y+L++NIY
Sbjct: 577 DEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIY 636

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           +   RW++  KLRK MKE+ VKK PGCS+V V+ +   F  GD++HP++ +IY +L+ + 
Sbjct: 637 AEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILY 696

Query: 599 HQSKNHGYI 607
            Q +  GY+
Sbjct: 697 EQMRKAGYV 705



 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 236/451 (52%), Gaps = 8/451 (1%)

Query: 63  KIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPY 122
           ++ + +   +     ++N  V     II  + N    +A+ LY +M   G+ P+      
Sbjct: 66  EVSACANQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLS 125

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           V+KAC     L+ G++VH   +     S+V V   L  +Y  CG ++   ++F       
Sbjct: 126 VIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVF----DRM 181

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            +RD+VSW  +I  Y +   P EA+  F +M    ++P+   LV V+  C+ L  L  G 
Sbjct: 182 PKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGK 241

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           +IH Y   +   +  DV + N L++MY KCGN+ +A K+F+ MP+++V SWN++I G + 
Sbjct: 242 QIHCYAIRS--GIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSL 299

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
             Q  EAL  F RMQ  G+KP+  T+V VL +CA++  LE G+ +H Y  ++   ++  +
Sbjct: 300 NSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVV 359

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           GNALV+MYAKCG ++ A+ +F  M  ++V ++ A+I G + HG   +AL +F EM   GI
Sbjct: 360 GNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGI 419

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
           +PD    V VL AC+H   +E+G K     +     +        +VD++ + G +  A 
Sbjct: 420 KPDSFAIVSVLPACAHFLALEQG-KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQ 478

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
            L + MP   D   W  ++ A  IH   E A
Sbjct: 479 KLFERMP-EQDVVSWTTMILAYGIHGHGEDA 508


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/551 (39%), Positives = 349/551 (63%), Gaps = 32/551 (5%)

Query: 77  SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           S+Q P    +N +I+  + +++P+ A+ LY  M+  GL PN+YT P++ K+C +S++ + 
Sbjct: 37  SIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQE 96

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH--------------- 180
           G+Q+HA  +K  L  +++V  +L+ +YA  G+++  HK+F    H               
Sbjct: 97  GKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYAS 156

Query: 181 ----PQAQR--------DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV 228
                +AQ+        D+VSW  +I  Y ++    EA+  F +M + +++PD   +  V
Sbjct: 157 RGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATV 216

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           LS C+  G++ LG +IH +I DNH     ++ + NALID+Y KCG +  A  +F+ +  K
Sbjct: 217 LSTCTHSGNVELGRQIHSWI-DNH-GFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYK 274

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           +V+SWN++I G  +    KEAL +F+ M  LG  P+D T++ +L +CA++G +++G+W+H
Sbjct: 275 DVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIH 334

Query: 349 TYLDKN--HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
            Y+DK    I T+  +  +L+DMYAKCG I+ A  VF ++  + + S  AMI G A+HG+
Sbjct: 335 VYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGR 394

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
           A  A D+ S M + GIEPD++TFVG+LSACSHAGL + G K F  M+  Y ++P+ EHYG
Sbjct: 395 ADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYG 454

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CM+DL GR+GL +EA +LI SM + PD  +WG+LL ACKIH  +EL E++ + L++ EP+
Sbjct: 455 CMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPK 514

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
             G+Y+L++NIY++  RW +  ++R  + ++ +KK PGCS +E+    +EF  GDK HP+
Sbjct: 515 NPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQ 574

Query: 587 TLEIYKLLDEI 597
             EIYK+L+EI
Sbjct: 575 NKEIYKMLEEI 585



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 33/260 (12%)

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +P A  VF  +   N +SWN+MI G         AL+++  M  LGL P+ +T   +  S
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA     + GK +H  + K  +  D  +  +L+ MYA+ G ++ A  VF +   RDV SY
Sbjct: 88  CAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSY 147

Query: 395 TAMIVGLAIHGK-----------------AW--------------KALDIFSEMSQVGIE 423
           TAMI G A  G                  +W              +AL++F+EM ++ ++
Sbjct: 148 TAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVK 207

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           PDE T   VLS C+H+G VE G +        +      +    ++DL+ + G +  A  
Sbjct: 208 PDESTMATVLSTCTHSGNVELG-RQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHG 266

Query: 484 LIKSMPLVPDAFVWGALLGA 503
           L + +    D   W  L+G 
Sbjct: 267 LFEGLQ-YKDVISWNTLIGG 285


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/642 (37%), Positives = 378/642 (58%), Gaps = 49/642 (7%)

Query: 5   LTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQILY 61
           +++ + S  N+   F+   +L    +  SSK   QLK+ HA +++TG    P   +++  
Sbjct: 9   ISLQNFSTLNNNLLFRNHQILSTIDKCSSSK---QLKEVHARMLRTGLFFDPFSASKLFT 65

Query: 62  DKIIS-LSRGNEIENLSLQNPQ--VYLYNFIIQC-LSNANPLEAIALYREMLIKGL-LPN 116
              +S  S  +   NL  Q PQ  +Y +N +I+   S+++P ++  ++ ++L K   LPN
Sbjct: 66  ASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPN 125

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
            +T P+V+KA  + ++ RVG  VH  ++K +   ++Y+ N+L+R Y  CG +    +LF 
Sbjct: 126 KFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFK 185

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
                 + +D+VSW ++I A+ + + P +A+  F  M + N+ P+ + +V VLSAC+K  
Sbjct: 186 ----GISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKL 241

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---------- 286
           DL  G  +  YI      +  D+ + NA++DMY KCG++  A+K+FDEMP          
Sbjct: 242 DLEFGRWVCSYIERKGIKV--DLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIM 299

Query: 287 ---------------------VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL-KPD 324
                                VK + +WN +I+     G+ KEAL IF  +Q   + KPD
Sbjct: 300 LDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPD 359

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
           + TLV  L++CA +G ++LG W+H Y+ +  I  +  + ++LVDMYAKCG +++A  VF 
Sbjct: 360 EVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFY 419

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
           S++ RDVY ++AMI GL +HG+   A+D+F EM +  ++P+ VTF  VL ACSHAGLV+E
Sbjct: 420 SVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDE 479

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G   F +M  VY + P+ +HY CMVD+ GRAG + EA++LI  M   P A VWGALLGAC
Sbjct: 480 GRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGAC 539

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
            +H  VEL E+  + L++ EP   GA +L++NIY+   RW++  +LRK M++ ++KK PG
Sbjct: 540 SLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPG 599

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           CS +E  G  +EF  GD +HP +  IY  L+EI  + K+ GY
Sbjct: 600 CSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGY 641


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/617 (38%), Positives = 367/617 (59%), Gaps = 59/617 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQ 82
           L + KS+ QLKQ  + I + G    +  I  +K+++    + + NL         +Q+P 
Sbjct: 104 LRNCKSMDQLKQIQSQIFRIGLEGDRDTI--NKLMAFCADSSLGNLRYAEKIFNYVQDPS 161

Query: 83  VYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           +++YN +++  +    L + + L++++   GL P+ +T P+VLKA    + +R G++V  
Sbjct: 162 LFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRG 221

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           + +KT +  + YV+N+L+ +Y     ++   KLF         RD VSW  +I  YV+  
Sbjct: 222 FIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFD----EMTTRDSVSWNVMISGYVRCR 277

Query: 202 YPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
              +AI +F +M Q  N +PD   +V  LSAC+ L +L LG +IH Y+      L     
Sbjct: 278 RFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKE---LGFTTR 334

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF------- 313
           I NAL+DMY KCG +  AR +FDEM +KNV+ W SMI+G  + G  +EA D+F       
Sbjct: 335 IDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRD 394

Query: 314 ------------------------RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
                                   R MQ   +KPD FT+V +L  CA +G LE GKW+H 
Sbjct: 395 VVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHG 454

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           YLD+N I  D  +G AL++MY+KCG +D++  +F  ++ +D  S+T++I GLA++GK  +
Sbjct: 455 YLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSE 514

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           AL +FSEM +VG +PD++TF+GVLSACSH GLVEEG + F  M +V+ ++P+ EHYGC++
Sbjct: 515 ALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVI 574

Query: 470 DLFGRAGLIREALDLIKSMPL------VPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           DL GRAGL+ EA +LI+ +P+      VP   ++GALL AC+IH  V++ E + + L   
Sbjct: 575 DLLGRAGLLDEAEELIQEIPIENCEIVVP---LYGALLSACRIHNNVDMGERLAKKLENI 631

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           E      + L+ NIY+S +RW++A K+R+KMKE  VKK PGCSL+EV G  +EF  GD S
Sbjct: 632 ESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPS 691

Query: 584 HPKTLEIYKLLDEIMHQ 600
           HP+ +EI  +L+ +  Q
Sbjct: 692 HPEMIEICSMLNRVTGQ 708


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/562 (38%), Positives = 350/562 (62%), Gaps = 32/562 (5%)

Query: 77  SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           ++Q P + ++N +++   S+++P+ A+ +Y  M+  G LPN+Y+ P++LK+C +S++   
Sbjct: 23  TIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEE 82

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ------------- 182
           G+Q+HA  +K     + YV  +L+ +YA  G ++   K+F    H               
Sbjct: 83  GRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYAS 142

Query: 183 --------------AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV 228
                          +RD+VSW  +I  YV+     EA+  F +M + N+RPD   LV V
Sbjct: 143 RGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSV 202

Query: 229 LSACSKLGDLSLGIKIHRYITDNH--FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
           +SAC++ G + LG ++H ++ D+      S  + I NALID+Y KCG++ +A  +F+ + 
Sbjct: 203 VSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLS 262

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
            K+VVSWN++I G TH   +KEAL +F+ M   G  P+D TL+ VL +CA++G +++G+W
Sbjct: 263 CKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRW 322

Query: 347 VHTYLDKN--HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           +H Y+DK    +  +  +  +L+DMYAKCG I+ A  VF SM  R + S+ AMI G A+H
Sbjct: 323 IHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMH 382

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G+A  A D+FS M    +EPD++TFVG+LSACSH+GL++ G + F  M++ YNL P+ EH
Sbjct: 383 GRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEH 442

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           YGCM+DL G +GL +EA ++I +MP+ PD  +W +LL ACK H  +ELAE   + L++ E
Sbjct: 443 YGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIE 502

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           PE  G+Y+L++NIY++  RW++  ++R  +  + +KK PGCS +EV    +EF  GDK H
Sbjct: 503 PENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLH 562

Query: 585 PKTLEIYKLLDEIMHQSKNHGY 606
           P+  EIY +L+E+  Q +  G+
Sbjct: 563 PRRREIYHMLEEMDVQLEEAGF 584



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 35/264 (13%)

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
            +P A  VF+ +   N++ WN+M+ G         AL+++ RM  LG  P+ ++   +L 
Sbjct: 13  GLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLK 72

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           SCA     E G+ +H  + K     D ++  +L+ MYA+ G ++ A  VF +   RDV S
Sbjct: 73  SCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVS 132

Query: 394 YTAMIVGLAIHGK-----------------AW--------------KALDIFSEMSQVGI 422
            TA+I G A  G                  +W              +AL++F EM +  +
Sbjct: 133 CTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNV 192

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            PDE T V V+SAC+ +G +E G +      D    +      +    ++DL+ + G + 
Sbjct: 193 RPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVE 252

Query: 480 EALDLIKSMPLVPDAFVWGALLGA 503
            A  L + +    D   W  L+G 
Sbjct: 253 TAFGLFEGLS-CKDVVSWNTLIGG 275


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/545 (39%), Positives = 340/545 (62%), Gaps = 32/545 (5%)

Query: 77  SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           ++Q P   ++N +++  + +++P+ A+ LY  M+  GLLPN+YT P++LK+C +S++   
Sbjct: 25  TIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEE 84

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ------------- 182
           GQQ+H + +K     ++YV  +L+ +YA  G ++  HK+F    H               
Sbjct: 85  GQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYAS 144

Query: 183 ------AQ--------RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV 228
                 AQ        +D+VSW  +I  Y +     EA+  F +M + N+RPD   +V V
Sbjct: 145 SGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTV 204

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           LSAC++   + LG ++H +I D+ F    ++ I NALID+Y KCG + +A  +F+ +  K
Sbjct: 205 LSACAQSRSVELGRQVHSWIDDHGFG--SNLKIVNALIDLYSKCGQVETACGLFEGLSCK 262

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           +VVSWN++I G TH   +KEAL +F+ M   G  P+D T+V +L +CA++G +++G+W+H
Sbjct: 263 DVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIH 322

Query: 349 TYLDKN--HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
            Y+DK    +     +  +L+DMYAKCG I+ A  VF SM  + + S+ AMI G A+HG+
Sbjct: 323 VYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGR 382

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
           A    D+FS M + GIEPD++TFVG+LSACSH+G ++ G   F  M++ Y++ P+ EHYG
Sbjct: 383 ANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYG 442

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CM+DL G +GL +EA ++IK+MP+ PD  +W +LL AC+ H  +ELAE    NL++ EPE
Sbjct: 443 CMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPE 502

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
             G+Y+L++NIY++   W E  K+R  +  + +KK PGCS +E+  E +EF  GDK HP+
Sbjct: 503 NPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPR 562

Query: 587 TLEIY 591
             EIY
Sbjct: 563 NREIY 567



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 114/259 (44%), Gaps = 33/259 (12%)

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
           P A  VF  +   N + WN+M+ G         AL ++  M  LGL P+ +T   +L SC
Sbjct: 17  PYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSC 76

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A     E G+ +H ++ K     D ++  +L+ MYA+ GR++ A  VF     RDV SYT
Sbjct: 77  AKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYT 136

Query: 396 AMIVGLAIHGK-----------------AW--------------KALDIFSEMSQVGIEP 424
           A+I G A  G                  +W              +AL++F EM +  + P
Sbjct: 137 ALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRP 196

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           DE T V VLSAC+ +  VE G +        +      +    ++DL+ + G +  A  L
Sbjct: 197 DEGTMVTVLSACAQSRSVELG-RQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGL 255

Query: 485 IKSMPLVPDAFVWGALLGA 503
            + +    D   W  L+G 
Sbjct: 256 FEGLS-CKDVVSWNTLIGG 273


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/622 (37%), Positives = 370/622 (59%), Gaps = 56/622 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTG-SPQHQTQILYDKIISLSRGNEIENL--------SLQNP 81
           LE+  ++ ++ Q H+  IKTG S  H   +   K+I      E  ++         +  P
Sbjct: 42  LETCNTMYEINQIHSQTIKTGLSSNH---LFLTKVIIFCCTKESGDVYYARKVFDEIPQP 98

Query: 82  QVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V+++N +I+  S  N  E+ ++LY+ ML+  + P+ +T P++LK   +  +L+ G+ + 
Sbjct: 99  SVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLL 158

Query: 141 AYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
            +++    L SN++V    + L+++CGL+    K+F          ++V+W  ++  Y +
Sbjct: 159 NHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGD----GWEVVTWNVVLSGYNR 214

Query: 200 MDYPTEAILSFFDM---CQANLRPDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNL 255
                E+   F +M   C+  + P+ + LV++LSACSKL DL  G  I+ +YI +    +
Sbjct: 215 FKRYEESKRLFIEMEKKCEC-VSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGI--V 271

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR------------ 303
            P++ + NALIDM+  CG + +AR VFDEM  ++V+SW S++ G  +             
Sbjct: 272 EPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQ 331

Query: 304 -------------------GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
                               +FKE L +FR MQ   +KPD+FT+V +L +CA++G LELG
Sbjct: 332 MPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELG 391

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           +W  TY+DKN I  D FIGNAL+DMY KCG +++A  +F  M+ +D +++TAMIVGLA +
Sbjct: 392 EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANN 451

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G   +AL +FS M +  + PDE+T++GV+ AC+H GLV +G   F +M+  + ++P   H
Sbjct: 452 GHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTH 511

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           YGCMVDL GRAG ++EAL++I +MP+ P++ VWG+LLGAC++H  V+LAE+    ++  E
Sbjct: 512 YGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELE 571

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           PE    Y+L+ NIY++  +WK    +RK M ER +KK PGCSL+E+ G  YEF  GDKSH
Sbjct: 572 PENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSH 631

Query: 585 PKTLEIYKLLDEIMHQSKNHGY 606
           P++ EIY  L+ +     N GY
Sbjct: 632 PQSKEIYAKLENMKQDLSNAGY 653


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/617 (38%), Positives = 367/617 (59%), Gaps = 59/617 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQ 82
           L + KS+ QLKQ  + I + G    +  I  +K+++    + + NL         +Q+P 
Sbjct: 150 LRNCKSMDQLKQIQSQIFRIGLEGDRDTI--NKLMAFCADSSLGNLRYAEKIFNYVQDPS 207

Query: 83  VYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           +++YN +++  +    L + + L++++   GL P+ +T P+VLKA    + +R G++V  
Sbjct: 208 LFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRG 267

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           + +KT +  + YV+N+L+ +Y     ++   KLF         RD VSW  +I  YV+  
Sbjct: 268 FIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFD----EMTTRDSVSWNVMISGYVRCR 323

Query: 202 YPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
              +AI +F +M Q  N +PD   +V  LSAC+ L +L LG +IH Y+      L     
Sbjct: 324 RFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKE---LGFTTR 380

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF------- 313
           I NAL+DMY KCG +  AR +FDEM +KNV+ W SMI+G  + G  +EA D+F       
Sbjct: 381 IDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRD 440

Query: 314 ------------------------RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
                                   R MQ   +KPD FT+V +L  CA +G LE GKW+H 
Sbjct: 441 VVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHG 500

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           YLD+N I  D  +G AL++MY+KCG +D++  +F  ++ +D  S+T++I GLA++GK  +
Sbjct: 501 YLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSE 560

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           AL +FSEM +VG +PD++TF+GVLSACSH GLVEEG + F  M +V+ ++P+ EHYGC++
Sbjct: 561 ALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVI 620

Query: 470 DLFGRAGLIREALDLIKSMPL------VPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           DL GRAGL+ EA +LI+ +P+      VP   ++GALL AC+IH  V++ E + + L   
Sbjct: 621 DLLGRAGLLDEAEELIQEIPIENCEIVVP---LYGALLSACRIHNNVDMGERLAKKLENI 677

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           E      + L+ NIY+S +RW++A K+R+KMKE  VKK PGCSL+EV G  +EF  GD S
Sbjct: 678 ESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPS 737

Query: 584 HPKTLEIYKLLDEIMHQ 600
           HP+ +EI  +L+ +  Q
Sbjct: 738 HPEMMEICSMLNRVTGQ 754


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/578 (39%), Positives = 359/578 (62%), Gaps = 16/578 (2%)

Query: 40  LKQFHAFIIK----TGSPQHQTQILYDKIIS---LSRGNEIENLSLQNP-QVYLYNFIIQ 91
           L Q HA +IK    TGSP+    +L     S   L     +  L  + P     YN +++
Sbjct: 32  LPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMR 91

Query: 92  CLSNA-NPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
            L +A +P +A+ L+ EML +  + P+ +T+   LK+C +  +L VG+ + AY++K  L+
Sbjct: 92  ALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLM 151

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
           ++ +V ++L+ +YA C  + A   LF   +    +  +V W  +I AY+K     E +  
Sbjct: 152 ADRFVLSSLIHMYASCRDVAAAQLLFDAVE----ENGVVMWNAIITAYMKNGNWMEVVEM 207

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F  M +  +  D + LV V++AC ++GD  LG  +  Y+ +    L  +  +  ALIDMY
Sbjct: 208 FKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEK--GLVRNRNLMTALIDMY 265

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            KCG +  AR++FD M  ++VV+W++MI+G T   Q +EAL +F  MQ   ++P+D T+V
Sbjct: 266 AKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMV 325

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            VL++CA +G LE GKWVH+Y+ +  ++    +G ALVD YAKCG ID A   F SM  +
Sbjct: 326 SVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVK 385

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           + +++TA+I G+A +G+  +AL++FS M +  IEP +VTF+GVL ACSH+ LVEEG +HF
Sbjct: 386 NSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHF 445

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
             M++ Y ++P+ EHYGC+VDL GRAGLI EA   I++MP+ P+A +W ALL +C +H  
Sbjct: 446 DSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKN 505

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           VE+ E  ++ +V   P   G YIL++NIY+S  +WK A  +RK+MK+R ++KTPGCSL+E
Sbjct: 506 VEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIE 565

Query: 570 VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + G   EF   D  HP+  EIY+ ++E++ + K  GYI
Sbjct: 566 LDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYI 603


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/546 (39%), Positives = 343/546 (62%), Gaps = 32/546 (5%)

Query: 77  SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           ++Q P + ++N + +  + N++ + A+ LY  M+  GLLPN+Y+ P++LK+C +S++L  
Sbjct: 24  TIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKALIE 83

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ------------- 182
           GQQ+H + +K     ++YV  +L+ +YA  G ++  HK+F    H               
Sbjct: 84  GQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYAS 143

Query: 183 --------------AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV 228
                         + +D+VSW  +I  YV+     EA+  + DM + N++PD   +V V
Sbjct: 144 RGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTV 203

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           +SAC++ G + LG ++H +I D+ F    ++ I N LID+Y KCG + +A  +F  +  K
Sbjct: 204 VSACAQSGSIELGRQLHSWIEDHGFG--SNIKIVNVLIDLYSKCGEVETACGLFQGLAKK 261

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           +V+SWN++I G TH   +KEAL +F+ M   G  P+D T++ VL +CA++G +++G+W+H
Sbjct: 262 DVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIH 321

Query: 349 TYLDK--NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
            Y++K    +     +  +L+DMYAKCG I+ A  VF SM  R + S+ AMI G A+HGK
Sbjct: 322 VYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGK 381

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
           A  A D+FS+M + GI+PD++TFVG+LSACSH+G+++ G   F  MS+ Y + P+ EHYG
Sbjct: 382 ANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYG 441

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CM+DL G  GL +EA ++I++MP+ PD  +W +LL ACK+H  VEL E   +NL++ EPE
Sbjct: 442 CMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPE 501

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
             G+Y+L++NIY++  RW +  K+R  + ++ +KK PGCS +E+    +EF  GDK HP+
Sbjct: 502 NPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPR 561

Query: 587 TLEIYK 592
             EIY+
Sbjct: 562 NREIYR 567



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 116/257 (45%), Gaps = 33/257 (12%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A  +F+ +   N++ WN+M  G         AL ++  M  LGL P+ ++   +L SCA 
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
              L  G+ +H ++ K   + D ++  +L+ MYA+ GR++ A  VF     R V SYTA+
Sbjct: 78  SKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTAL 137

Query: 398 IVGLAIHGK-----------------AW--------------KALDIFSEMSQVGIEPDE 426
           I G A  G                  +W              +AL+++ +M +  ++PDE
Sbjct: 138 ITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDE 197

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
            T V V+SAC+ +G +E G +        +      +    ++DL+ + G +  A  L +
Sbjct: 198 STMVTVVSACAQSGSIELG-RQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQ 256

Query: 487 SMPLVPDAFVWGALLGA 503
            +    D   W  L+G 
Sbjct: 257 GLA-KKDVISWNTLIGG 272


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/614 (38%), Positives = 362/614 (58%), Gaps = 57/614 (9%)

Query: 21  QLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLS-RGNEIENL--- 76
            LSLLH    L+S      L+  HA +IKTG   H T     K++         + L   
Sbjct: 5   SLSLLHXCKTLQS------LRIIHAQMIKTG--LHNTNYALSKLLEXCVLSPHFDGLPYA 56

Query: 77  -----SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQS 130
                ++Q P + ++N + +  + +++P+ A+ LY  M+  GLLPN+YT P++LK+C +S
Sbjct: 57  ISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKS 116

Query: 131 QSLRVGQQVHAYSMK----------TALLS---------------------NVYVFNTLM 159
            + + GQQ+H   +K          T+L+S                     +V  +  L+
Sbjct: 117 XAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALI 176

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
             YA  G I++ HK+F         +D+VSW   I  Y +     EA+  F  M + N+R
Sbjct: 177 TGYASRGXIESAHKMFD----EIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVR 232

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD   +V VLSAC++ G + LG ++H +I D+ F    ++ I NALID+Y KCG + +A 
Sbjct: 233 PDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGX--NLKIVNALIDLYSKCGELETAC 290

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +F  +  K+V+SWN++I G TH   +KEAL +F+ M   G KP+D T++ +L++CA++G
Sbjct: 291 GLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLG 350

Query: 340 WLELGKWVHTYLDK--NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
            +++G+W+H Y+DK    +     +  +L+DMYAKCG I+ A  VF SM  R + S+ AM
Sbjct: 351 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAM 410

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I G A+HG+A  A DIFS M + GIEPD++TFVG+LSACSH+G+++ G   F  M+R Y 
Sbjct: 411 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYK 470

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           L P+ EHYGCM+DL G +GL +EA  +I +M + PD  +W +LL ACK+H  VEL E   
Sbjct: 471 LMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYA 530

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           +NL++ EPE  G+Y+L++NIY++  RW E  K R  + ++ +KK PGCS +E+    +EF
Sbjct: 531 QNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEF 590

Query: 578 RKGDKSHPKTLEIY 591
             GDK HP+  EIY
Sbjct: 591 IIGDKFHPRNREIY 604


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/596 (39%), Positives = 354/596 (59%), Gaps = 24/596 (4%)

Query: 27  QSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS------------LSRGNEIE 74
           Q+PR  + + V QL   HA ++K+G+        +  + +            LS    + 
Sbjct: 69  QTPRRAALRDVPQL---HATLLKSGAMTTSPDSFHSLLEAAALPAPATSSAHLSYAIRLF 125

Query: 75  NLSLQNPQ-VYLYNFIIQC-LSNANPLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQ 131
            L    P+    YN +I+  L   +P +A+ L+ EML    + P+ +T+   +K+C +  
Sbjct: 126 RLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMC 185

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
            L VG+ V AY+ K   + + +V N+L+ +YA CG + A H LFH  Q     + +++W 
Sbjct: 186 DLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQ----VKGVIAWN 241

Query: 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
            +I  YVK     E +  F  M +     D + L+ V +AC +LGD +LG  I  Y  + 
Sbjct: 242 AMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEK 301

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
               S +  +  AL+DMY KCG +  AR++FD M  ++VV+W++MI+G T   + +EAL 
Sbjct: 302 GMLRSRN--LATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALA 359

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           IF  MQG  + P+D T+V VL++CA +G LE GKWVH+Y+ +  +     +G ALVD YA
Sbjct: 360 IFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYA 419

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           KCG I  A   F SM  R+ +++TA+I G+A +G++ +AL++FS M +  IEP +VTF+G
Sbjct: 420 KCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIG 479

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           VL ACSH  LVEEG +HF  M++ Y + P+ EHYGCMVDL GRAGLI EA   I++MP+ 
Sbjct: 480 VLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIE 539

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P+A VW ALL AC +H  VE+ E  ++ +V  +P   G YIL++N Y+S  +WK A  +R
Sbjct: 540 PNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVR 599

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K+MKE+ V+K PGCSL+E+ G  +EF   D  HP+  EIY+ + E++   K  GYI
Sbjct: 600 KEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYI 655


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/616 (37%), Positives = 358/616 (58%), Gaps = 61/616 (9%)

Query: 21  QLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--- 77
            LSLLH    L+S      L+  HA +IKTG        L++   +LSR  E   LS   
Sbjct: 5   SLSLLHNCKTLQS------LRIIHAQMIKTG--------LHNTNYALSRLLEFCILSPNF 50

Query: 78  ------------LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVL 124
                       +Q P + ++N + +  + +++P+ AI LY  M+  GLLPN+YT P++L
Sbjct: 51  DGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLL 110

Query: 125 KACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH---- 180
           K+C + +  + GQQ+H + +K     ++YV  +L+ +Y   G  K  HK+F    H    
Sbjct: 111 KSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVV 170

Query: 181 ---------------PQAQR--------DLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
                            AQ+        D+VSW  +I  Y       EA+  F +M + N
Sbjct: 171 SYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTN 230

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++PD   +V V+SAC++ G + LG ++H +I D+   L  ++ I NALID+Y KCG + +
Sbjct: 231 VKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDH--GLGSNLKIVNALIDLYSKCGEVET 288

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A  +F  +  K+V+SWN+MI G TH   +KEAL +F+ M   G  P+D T++ +L +CA 
Sbjct: 289 ACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQ 348

Query: 338 IGWLELGKWVHTYLDK--NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           +G ++ G+W+H Y+DK    +     +  +L+DMYAKCG I+ A  VF SM  R + +  
Sbjct: 349 LGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACN 408

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           AMI G A+HG+A  A DIFS M + GIEPD++TFVG+LSACSH+G+++ G + F  M++ 
Sbjct: 409 AMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQN 468

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           Y + P+ EHYGCM+DL G  GL +EA ++I +M + PD  +W +LL ACK+H  VEL E 
Sbjct: 469 YKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGES 528

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             + L++ EPE  G+Y+L++NIY++  RW E   +R  + ++ +KK PGCS +E+    +
Sbjct: 529 FAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVH 588

Query: 576 EFRKGDKSHPKTLEIY 591
           EF  GDK HP+  EIY
Sbjct: 589 EFIIGDKFHPRNREIY 604


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/645 (37%), Positives = 369/645 (57%), Gaps = 58/645 (8%)

Query: 8   ASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL 67
           +S   Y  +     L+LL + P + S      LKQ H+ IIK+G   H T     K+I  
Sbjct: 15  SSDPPYKLLENHPHLNLLAKCPDIPS------LKQIHSLIIKSG--LHNTLFAQSKLIEF 66

Query: 68  SRGNEIENLSL----------QNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPN 116
              +   +LS           Q P ++++N +I+  S    P  ++ L+ +ML  GL PN
Sbjct: 67  CALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPN 126

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
           ++T P + K+C +S++    +Q+HA+++K AL  + +V  +L+ +Y+  G ++    +F 
Sbjct: 127 SHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFD 186

Query: 177 -----------------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
                                        F + P   +D+VSW  +I  YV+     EA+
Sbjct: 187 KSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPA--KDVVSWNAMIAGYVQSGRFEEAL 244

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F  M +A++ P+   +V VLSAC  L  L LG  I  ++ D  F    ++ + NAL+D
Sbjct: 245 ACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFG--KNLQLVNALVD 302

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY KCG I +ARK+FD M  K+V+ WN+MI G  H   ++EAL +F  M    + P+D T
Sbjct: 303 MYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVT 362

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN-----ALVDMYAKCGRIDQAFGV 382
            + VL +CA++G L+LGKWVH Y+DKN +   G + N     +++ MYAKCG ++ A  V
Sbjct: 363 FLAVLPACASLGALDLGKWVHAYIDKN-LKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQV 421

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           FRSM  R + S+ AMI GLA++G A +AL +F EM   G +PD++TFVGVLSAC+ AG V
Sbjct: 422 FRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFV 481

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           E G ++F  M++ Y + P+ +HYGCM+DL  R+G   EA  L+ +M + PD  +WG+LL 
Sbjct: 482 ELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLN 541

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           AC+IH +VE  E V E L   EPE  GAY+L++NIY+   RW +  K+R K+ ++ +KK 
Sbjct: 542 ACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKV 601

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           PGC+ +E+ G  +EF  GDK HP++  I+++LDE+    +  G++
Sbjct: 602 PGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFV 646


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/590 (38%), Positives = 358/590 (60%), Gaps = 17/590 (2%)

Query: 29  PRLESSKSVGQLKQFHAFIIK----TGSPQHQTQILYDKIIS---LSRGNEIENLSLQNP 81
           PR         L Q HA +IK    TGS +    +L     S   L     +  L  + P
Sbjct: 21  PRAPLRADPSYLPQLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPP 80

Query: 82  -QVYLYNFIIQCLSNA-NPLEAIALYREML--IKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
                YN +++   +A +P +A+ L+ EML        + +T    LK+C +  +L VG+
Sbjct: 81  LSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGR 140

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            V AY++K  L+++ +V ++L+ +YA CG + A   +F   +    +  +V W  ++ AY
Sbjct: 141 GVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAE----ESGVVMWNAIVAAY 196

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           +K     E +  F  M +  +  D + LV V++AC ++GD  LG  +  ++ +     +P
Sbjct: 197 LKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNP 256

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
            +    AL+DMY KCG I  AR++FD M  ++VV+W++MI+G T   Q +EAL +F  MQ
Sbjct: 257 KLV--TALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQ 314

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              ++P+D T+V VL++CA +G LE GKWVH+Y+ +  ++    +G ALVD YAKCG ID
Sbjct: 315 LARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCID 374

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F SM  ++ +++TA+I G+A +G+  +AL++FS M + GIEP +VTF+GVL ACS
Sbjct: 375 DAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACS 434

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           H+ LVEEG +HF  M+R Y ++P+ EHYGCMVDL GRAGL+ EA   I++MP+ P+A +W
Sbjct: 435 HSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIW 494

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
            ALL +C +H  V + E  ++ ++   P   G Y+L++NIY+S  +WK+A  +RK+MK+R
Sbjct: 495 RALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDR 554

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            ++KTPGCSL+E+ G  +EF   D  HP+  EIY+ ++E++ + K  GY+
Sbjct: 555 GIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYV 604


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/633 (39%), Positives = 359/633 (56%), Gaps = 57/633 (9%)

Query: 11  SRYNDINTFQQ--LSLLHQS--PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS 66
           SR +  +TF      L  QS    L+S KS+  LKQ HA I + G   HQ  +  +K+++
Sbjct: 20  SRRSKFSTFTNPTTGLSQQSCISYLKSCKSMTHLKQIHAQIFRVG--LHQDIVSLNKLMA 77

Query: 67  LSRGNEIENLS--------LQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNT 117
                   NL+        ++ P + +YN II+  +   N    + L+ ++   GL P+ 
Sbjct: 78  FCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDN 137

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
           +T P+V KA      +   +++     KT L  + YV N+L+ +YA   L   +  LF  
Sbjct: 138 FTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFD- 196

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLG 236
                  RD++SW  +I  YVK     +AI  F  M + + L PD   +V  LSAC+ L 
Sbjct: 197 ---EMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALK 253

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
            L LG KIH Y+ DN    +P   I NAL+DMY KCG +  AR VF+EMP KNV+ W +M
Sbjct: 254 RLELGKKIHHYVRDN-VKFTP--IIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTM 310

Query: 297 IAGLTHRGQ-------------------------------FKEALDIFRRMQGLGLKPDD 325
           ++G  + G+                               F EA+ +FR MQ   +KPD 
Sbjct: 311 VSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDK 370

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
           F +V +L  CA  G +E GKW+H ++D+N I  D  +G AL++MYAKCG I++A  +F  
Sbjct: 371 FIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYG 430

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
           ++ +D  S+T++I GLA++GK  KAL++FS+M Q G+ PD++TF+GVLSACSH GLVEEG
Sbjct: 431 LRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEG 490

Query: 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF---VWGALLG 502
            K F  M   Y ++P+ EHYGC+VDL GRAGL+ EA +LIK +P    A    ++G+LL 
Sbjct: 491 RKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLS 550

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           AC+I+  VE+ E V + LV+FE      + L+ NIY+  +RW++  K+R+KMK+  VKKT
Sbjct: 551 ACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKT 610

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           PGCS +EV    +EF  G  SHP+  EIY +L+
Sbjct: 611 PGCSSIEVDSIIHEFFSGHPSHPEMREIYYMLN 643


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/610 (37%), Positives = 361/610 (59%), Gaps = 49/610 (8%)

Query: 21  QLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLS-RGNEIENL--- 76
            LSLLH    L+S      L+  HA +IKTG   H T     K+I         + L   
Sbjct: 5   SLSLLHNCKTLQS------LRMIHAQMIKTG--LHNTNYALSKLIEFCVLSPHFDGLPYA 56

Query: 77  -----SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQS 130
                ++Q P + ++N + +  + +++P+ A+ LY  M+  GLLPN YT P++LK+C +S
Sbjct: 57  ISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKS 116

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH---------- 180
           ++ R GQQ+H + +K     ++YV  +L+ +Y   G ++   K+F    H          
Sbjct: 117 KAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALI 176

Query: 181 ---------PQAQR--------DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM 223
                      AQ+        D+VSW  +I  Y +     EA+  F +M + N+RPD  
Sbjct: 177 TGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDES 236

Query: 224 ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
            +V V+SAC++   + LG ++H +I D+ F    ++ I NALID+Y+KCG + +A  +F+
Sbjct: 237 TMVSVVSACAQSASIELGRQVHSWIDDHGF--GSNLKIVNALIDLYIKCGEVETACGLFE 294

Query: 284 EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLEL 343
            +  K+V+SWN++I G TH   +KEAL +F+ M   G  P+D T++ +L +CA++G +E+
Sbjct: 295 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEI 354

Query: 344 GKWVHTYLDK--NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
           G+W+H Y++K    +        +L+DMYAKCG I+ A  VF S+  R + S+ AMI G 
Sbjct: 355 GRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGF 414

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
           A+HG+A  A DIFS M +  IEPD++TFVG+LSACSH+G+++ G   F  M   Y + P+
Sbjct: 415 AMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPK 474

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
            EHYGCM+DL G +GL +EA ++I +M + PD  +W +LL ACK++A VEL E   +NL+
Sbjct: 475 LEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLI 534

Query: 522 RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581
           + EP+  G+Y+L++NIY++  RW E  K+R  + ++ +KK PGCS +E+    +EF  GD
Sbjct: 535 KIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGD 594

Query: 582 KSHPKTLEIY 591
           K HP+  EIY
Sbjct: 595 KFHPRNREIY 604


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/618 (37%), Positives = 363/618 (58%), Gaps = 48/618 (7%)

Query: 31  LESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIIS----LSRGNEIENLSLQNPQV 83
           ++      QLKQ HA +++TG    P   ++++    +S    L    ++ +  + +P +
Sbjct: 42  IDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFD-QIPHPNL 100

Query: 84  YLYNFIIQC-LSNANPLEAIALYREMLIKGL-LPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           Y +N +I+   S++NP +++ ++  ML +    P+ +T P+++KA  + + L  G+  H 
Sbjct: 101 YTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHG 160

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             +K  L S+V++ N+L+  YA CG +   +++F     P+  RD+VSW ++I A+V+  
Sbjct: 161 MVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVF--VNIPR--RDVVSWNSMITAFVQGG 216

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
            P EA+  F +M   N++P+G+ +V VLSAC+K  D   G  +H YI  N    S  + +
Sbjct: 217 CPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGES--LTL 274

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF--------------- 306
            NA++DMY KCG++  A+++FD+MP K++VSW +M+ G    G++               
Sbjct: 275 SNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDI 334

Query: 307 ----------------KEALDIFRRMQ-GLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
                           KEAL++F  +Q     KPD+ TLV  L++CA +G ++LG W+H 
Sbjct: 335 AAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHV 394

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           Y+ K  +  +  +  +L+DMY KCG + +A  VF S++ +DV+ ++AMI GLA+HG    
Sbjct: 395 YIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKD 454

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           A+ +FS+M +  ++P+ VTF  +L ACSH GLVEEG   F  M  VY + P  +HY CMV
Sbjct: 455 AIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMV 514

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           D+ GRAGL+ EA++LI+ MP+ P A VWGALLGAC IH  V LAE     L+  EP   G
Sbjct: 515 DILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHG 574

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
           AY+L++NIY+   +W     LRK M++  +KK PGCS +EV G  +EF  GD SHP   +
Sbjct: 575 AYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKK 634

Query: 590 IYKLLDEIMHQSKNHGYI 607
           IY  LDEI+ + +  GY+
Sbjct: 635 IYAKLDEIVARLETIGYV 652



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/426 (30%), Positives = 213/426 (50%), Gaps = 56/426 (13%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL--IKAVHKLFHFRQH 180
           ++  C +++ L+   Q+HA  ++T L  + +  + L+   A+     +    ++F    H
Sbjct: 41  LIDQCSETKQLK---QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPH 97

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLS 239
           P    +L +W TLI+AY     P +++L F  M  Q+   PD      ++ A S+L +L 
Sbjct: 98  P----NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELF 153

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G   H  +      L  DVFI N+LI  Y KCG +    +VF  +P ++VVSWNSMI  
Sbjct: 154 TGKAFHGMVIK--VLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITA 211

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G  +EAL++F+ M+   +KP+  T+V VL++CA     E G+WVH+Y+++N I   
Sbjct: 212 FVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGES 271

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK------------- 406
             + NA++DMY KCG ++ A  +F  M  +D+ S+T M+VG A  G+             
Sbjct: 272 LTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPN 331

Query: 407 ----AW--------------KALDIFSEMS-QVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
               AW              +AL++F E+      +PDEVT V  LSAC+  G ++ G  
Sbjct: 332 QDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG-- 389

Query: 448 HFLDMSRVYNLQPQTEHYGC-----MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
                  VY ++ Q     C     ++D++ + G +++AL +  S+    D FVW A++ 
Sbjct: 390 ---GWIHVY-IKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVER-KDVFVWSAMIA 444

Query: 503 ACKIHA 508
              +H 
Sbjct: 445 GLAMHG 450



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 199/439 (45%), Gaps = 66/439 (15%)

Query: 22  LSLLHQSPRLESS-------KSVGQL------KQFHAFIIKT--GSPQHQTQIL---YDK 63
           L +LHQSP            K+  +L      K FH  +IK   GS       L   Y K
Sbjct: 124 LRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAK 183

Query: 64  IISLSRGNEIENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPY 122
              L  G  +  +++    V  +N +I        P EA+ L++EM  + + PN  T+  
Sbjct: 184 CGELGLGYRV-FVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVG 242

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           VL AC +      G+ VH+Y  +  +  ++ + N ++ +Y  CG ++   +LF       
Sbjct: 243 VLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLF----DKM 298

Query: 183 AQRDLVSWTT-------------------------------LIQAYVKMDYPTEAILSFF 211
            ++D+VSWTT                               LI AY +   P EA+  F 
Sbjct: 299 PEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFH 358

Query: 212 DM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
           ++      +PD + LV  LSAC++LG + LG  IH YI      L  +  +  +LIDMY 
Sbjct: 359 ELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKL--NCHLTTSLIDMYC 416

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG++  A  VF  +  K+V  W++MIAGL   G  K+A+ +F +MQ   +KP+  T   
Sbjct: 417 KCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTN 476

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIG----NALVDMYAKCGRIDQAFGVFRSM 386
           +L +C+++G +E G+   T+ ++  +      G      +VD+  + G +++A  +   M
Sbjct: 477 ILCACSHVGLVEEGR---TFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKM 533

Query: 387 KCRDVYS-YTAMIVGLAIH 404
                 S + A++    IH
Sbjct: 534 PMAPAASVWGALLGACTIH 552


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/611 (37%), Positives = 360/611 (58%), Gaps = 50/611 (8%)

Query: 39  QLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYNFII 90
            LKQ HA +++TG    P   T++      +LS  + ++        +  P +Y +N +I
Sbjct: 45  HLKQLHAHMLRTGLFFDPPSATKLF--TACALSSPSSLDYACKVFDQIPRPNLYTWNTLI 102

Query: 91  QCL-SNANPLEAIALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           +   S+  P++ + ++ +ML +    PN+YT P+V+KA  +  SL  GQ +H   MK + 
Sbjct: 103 RAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASF 162

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            S++++ N+L+  Y+  G + + + +F        ++D+VSW ++I  +V+   P EA+ 
Sbjct: 163 GSDLFISNSLIHFYSSLGDLDSAYLVFS----KIVEKDIVSWNSMISGFVQGGSPEEALQ 218

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F  M   N RP+ + +V VLSAC+K  DL  G     YI  N  ++  ++ + NA++DM
Sbjct: 219 LFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDI--NLILSNAMLDM 276

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF---------------------- 306
           Y+KCG++  AR++FD+M  K++VSW +MI G    G +                      
Sbjct: 277 YVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALI 336

Query: 307 ---------KEALDIFRRMQ-GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
                    KEAL IFR +Q     KP++ TL   L +CA +G ++LG W+H Y+ K  I
Sbjct: 337 SSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGI 396

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
             +  I  +L+DMY+KCG +++A  VF S++ RDV+ ++AMI GLA+HG    A+D+FS+
Sbjct: 397 KLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSK 456

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M +  ++P+ VTF  +L ACSH+GLV+EG   F  M  VY + P ++HY CMVD+ GRAG
Sbjct: 457 MQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAG 516

Query: 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536
            + EA++LI+ MP+VP A VWGALLGAC+I+  VELAE+    L+  +    GAY+L++N
Sbjct: 517 CLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSN 576

Query: 537 IYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDE 596
           IY+   +W    +LR+ MK   ++K PGCS +EV G  +EF  GD SHP + EIY  LDE
Sbjct: 577 IYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDE 636

Query: 597 IMHQSKNHGYI 607
           I+ + K+ GY+
Sbjct: 637 IVARIKSTGYV 647


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/642 (35%), Positives = 372/642 (57%), Gaps = 59/642 (9%)

Query: 8   ASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKT-------GSPQHQTQIL 60
           A+ +   D   FQQ +            S  QLKQ HA +++T        + +  T   
Sbjct: 135 ATATNVGDRALFQQCT------------SFKQLKQIHAQMLRTNKLHDPYAASELFTAAA 182

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCL-SNANPLEAIALYREMLIKGLL-PNTY 118
           +    +L    ++ +  +  P +Y +N +I+ L ++++P++++ ++  ML      PN +
Sbjct: 183 FSSFSALDYARKVFD-QIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKF 241

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T P ++KA  + +   VG+ VH  ++KT+   +V+V N+L+  YA CG +   + +F   
Sbjct: 242 TFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMI 301

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
           +     +D+VSW +++  +V+  YP +A+  F  M    + P+ + +V V+SAC+K  +L
Sbjct: 302 E--GNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNL 359

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR------------------- 279
           +LG K+  YI  N   ++ +V   NA IDM++KCG +  AR                   
Sbjct: 360 TLGRKVCDYIDRNEMMMNLNVC--NATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIID 417

Query: 280 ------------KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ--GLGLKPDD 325
                        +FD MP K++ +WN +I+G    G+ KEAL IFR +Q    G +PD 
Sbjct: 418 GYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQ 477

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
            TL+  L++CA +G +++G+W+H Y+ K  I  +  +  +L+DMY+K G +++A  VF S
Sbjct: 478 VTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHS 537

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
           +  +DV+ ++AMI GLA+HG+   A+++F +M +  ++P+ VTF  +L ACSH+GLV+EG
Sbjct: 538 IGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEG 597

Query: 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505
            + F +M RVY + P+T+HY CMVD+ GRAG + EAL  I+ MPL P A VWGALLGAC 
Sbjct: 598 KRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACC 657

Query: 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGC 565
           IH  +ELAE     L+  EP   GAY+L++N+Y+    W+   +LR++M++  +KK  GC
Sbjct: 658 IHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGC 717

Query: 566 SLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           S +E+ G  +EF  GD +HP + +IY  LDEIM + ++HGY+
Sbjct: 718 SSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYV 759


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/593 (37%), Positives = 353/593 (59%), Gaps = 42/593 (7%)

Query: 44  HAFIIKTGSPQHQTQILYDKIISLSR-GNEIENL--------SLQNPQVYLYNFIIQCLS 94
           HA ++KTG   H T     K++ L       + L        + Q P + ++N +++ L+
Sbjct: 2   HAQMVKTG--LHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLA 59

Query: 95  NANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
           +++ L   + +Y  M+  G +PN YT P++LK+C +S++   G+Q+HA  MK     + Y
Sbjct: 60  SSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRY 119

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQ---------------------------AQRD 186
              +L+ +YA  G ++   K+F                                   +RD
Sbjct: 120 AHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERD 179

Query: 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
           +VSW  +I  YV+     EA+  F +M + N+RPD   LV VLSAC++ G + LG +IH 
Sbjct: 180 VVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHT 239

Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
            + D+H      + I NA I +Y KCG++  A  +F+ +  K+VVSWN++I G TH   +
Sbjct: 240 LV-DDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLY 298

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK--NHINTDGFIGN 364
           KEAL +F+ M   G  P+D T++ VL +CA++G +++G+W+H Y+DK    +     +  
Sbjct: 299 KEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRT 358

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
           +L+DMYAKCG I+ A  VF SM  + + S+ AMI G A+HG+A  A D+FS M + GIEP
Sbjct: 359 SLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEP 418

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           D++T VG+LSACSH+GL++ G   F  +++ YN+ P+ EHYGCM+DL G AGL +EA ++
Sbjct: 419 DDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEI 478

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
           I  MP+ PD  +W +LL ACK+H  +ELAE   + L+  EPE  G+Y+L++NIY++  RW
Sbjct: 479 IHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRW 538

Query: 545 KEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           ++  ++R+ +  + +KK PGCS +E+    +EF  GDK HP++ EIY++L+E+
Sbjct: 539 EDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEM 591


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/549 (41%), Positives = 333/549 (60%), Gaps = 41/549 (7%)

Query: 91  QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
           +CL  A   +A+A Y  ML +G +P+ YT P +LKA  +  S    + VHA+ +K  +  
Sbjct: 18  RCLVAARE-DAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGR 76

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDL-VSWTTLIQAYVKMDYPTEAILS 209
           N +V  +L+  YA  G   A   L   R+     RD  V W  LI  + +     EA  S
Sbjct: 77  NAHVATSLVTAYAAGGDGAAARALLSERE-----RDTPVVWNALISGHNRCRRFGEACCS 131

Query: 210 FFDMCQANLRPDGMILVIVLSACSK-LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
           F DM +A   P  +  V VLSAC K  GD+ LG+++H  +  +   + PD+ + NAL+DM
Sbjct: 132 FVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGS--GVLPDLRVENALVDM 189

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ----------------------- 305
           Y +C ++ SA K+FD M V++VVSW S+++GLT  G+                       
Sbjct: 190 YAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMI 249

Query: 306 --------FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
                   F+EAL++FR MQ   +  D+FT+V V+ +CA +G LE+G+WV  Y+ +  I 
Sbjct: 250 DGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIK 309

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            D F+GNAL+DMY+KCG I++A  VF+ M  RD +++TA+I+GLA++G   +A+++F  M
Sbjct: 310 MDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRM 369

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
             V   PDEVTF+GVL+AC+HAGLV++G + FL M   YN+ P   HYGC++DLFGRAG 
Sbjct: 370 IGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGK 429

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
           I EALD I  MP+ P++ +WG LL AC++H   E+ E+V E L++ +PE    Y L++NI
Sbjct: 430 ITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNI 489

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           Y+  NRW++  +LR  + E+ +KK PGCSL+E+ G  +EF  GD+SHP + EIY  L+ I
Sbjct: 490 YAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESI 549

Query: 598 MHQSKNHGY 606
           ++   N GY
Sbjct: 550 INDLNNVGY 558


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/616 (38%), Positives = 355/616 (57%), Gaps = 73/616 (11%)

Query: 24  LLHQSPRL---ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--- 77
           LL   P L    + KS   LKQ H+ IIKTG   H TQ    K+I     +   NLS   
Sbjct: 29  LLQNHPSLTLLSTCKSFQNLKQIHSQIIKTG--LHNTQFALSKLIEFCAISPFGNLSYAL 86

Query: 78  -----LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
                ++ P  +++N +I+  S +++P+ AI  Y  ML+ G+ PN+YT P++LK+C +  
Sbjct: 87  LLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVG 146

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------------- 176
           + + G+Q+H + +K  L S+ +V  +L+ +YA  G +     +F                
Sbjct: 147 ATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALIT 206

Query: 177 --------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
                         F + P   RD VSW  +I  Y +     EA+  F +M +AN+ P+ 
Sbjct: 207 GYTLRGCLDDARRLFEEIPV--RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
             +V VLSAC++ G L LG  +  +I D+   L  ++ + NALIDMY KCG++  AR +F
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDH--GLGSNLRLVNALIDMYSKCGDLDKARDLF 322

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
           + +  K+++SWN MI G +H   +KEAL +FR+MQ   ++P+D T V +L +CA +G L+
Sbjct: 323 EGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALD 382

Query: 343 LGKWVHTYLDKNHIN-TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
           LGKW+H Y+DK  +  T+  +  +L+DMYAKCG I+ A  VF  MK + + S+ AMI GL
Sbjct: 383 LGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGL 442

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
           A+HG A  AL++F +M   G EPD++TFVGVLSACSHAGLVE G + F  M   Y++ P+
Sbjct: 443 AMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPK 502

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
            +HYGCM+DL GRAGL  EA  L+K+M + PD  +WG+LLGAC++H  VEL E   ++L 
Sbjct: 503 LQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLF 562

Query: 522 RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581
             EPE  GAY+L++NIY++  RW +  ++R K+ ++ +KK                    
Sbjct: 563 ELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKXQ------------------ 604

Query: 582 KSHPKTLEIYKLLDEI 597
                  +IYK+LDEI
Sbjct: 605 -------DIYKMLDEI 613


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/592 (37%), Positives = 352/592 (59%), Gaps = 43/592 (7%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKIISLS-RGNEIENL--------SLQNPQVYLYNFI 89
            L+  HA +IKTG   H T     K+I         + L        ++Q P + ++N +
Sbjct: 2   SLRMIHAQMIKTG--LHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTM 59

Query: 90  IQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
            +  + +++P+ A+ LY  M+  GLLPN YT P++LK+C +S++ R GQQ+H + +K   
Sbjct: 60  FRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY 119

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH-------------------PQAQR---- 185
             ++YV  +L+ +Y   G ++   K+F    H                     AQ+    
Sbjct: 120 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDE 179

Query: 186 ----DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
               D+VSW  +I  Y +     EA+  F +M + N+RPD   +V V+SAC++   + LG
Sbjct: 180 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 239

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            ++H +I D+ F    ++ I NALID+Y+KCG + +A  +F+ +  K+V+SWN++I G T
Sbjct: 240 RQVHSWIDDHGF--GSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 297

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK--NHINTD 359
           H   +KEAL +F+ M   G  P+D T++ +L +CA++G +E+G+W+H Y++K    +   
Sbjct: 298 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANA 357

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
                +L+DMYAKCG I+ A  VF S+  R + S+ AMI G A+HG+A  A DIFS M +
Sbjct: 358 SSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRK 417

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             IEPD++TFVG+LSACSH+G+++ G   F  M   Y + P+ EHYGCM+DL G +GL +
Sbjct: 418 NEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFK 477

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA ++I +M + PD  +W +LL ACK+H  VEL E   +NL++ EP+  G+Y+L++NIY+
Sbjct: 478 EAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYA 537

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           +  RW E  K+R  + ++ +KK PGCS +E+    +EF  GDK HP+  EIY
Sbjct: 538 TAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 589


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/580 (38%), Positives = 354/580 (61%), Gaps = 16/580 (2%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQTQILYDKII------SLSRGNEIENLSLQNPQVYLYNF 88
           KS+ Q KQ H  +++ G   HQ   L + ++      + ++   +      +P ++LYN 
Sbjct: 14  KSLHQAKQCHCLLLRLG--LHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNT 71

Query: 89  IIQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ-SQSLRVGQQVHAYSMKT 146
           +I+ + SN    +A+++Y  M   G  P+ +T P+VLKAC +      VG  +H+  +KT
Sbjct: 72  LIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKT 131

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
               +V+V   L+ LY+  G +    K+F   + P+  +++VSWT +I  Y++     EA
Sbjct: 132 GFDWDVFVKTGLVCLYSKNGFLTDARKVFD--EIPE--KNVVSWTAIICGYIESGCFGEA 187

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F  + +  LRPD   LV +L ACS++GDL+ G  I  Y+ ++      +VF+  +L+
Sbjct: 188 LGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRES--GSVGNVFVATSLV 245

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           DMY KCG++  AR+VFD M  K+VV W+++I G    G  KEALD+F  MQ   ++PD +
Sbjct: 246 DMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCY 305

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
            +V V ++C+ +G LELG W    +D +   ++  +G AL+D YAKCG + QA  VF+ M
Sbjct: 306 AMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGM 365

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
           + +D   + A+I GLA+ G    A  +F +M +VG++PD  TFVG+L  C+HAGLV++G 
Sbjct: 366 RRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGH 425

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           ++F  MS V+++ P  EHYGCMVDL  RAGL+ EA DLI+SMP+  ++ VWGALLG C++
Sbjct: 426 RYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRL 485

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H   +LAE V++ L+  EP   G Y+L++NIYS+ +RW EA K+R  + ++ ++K PGCS
Sbjct: 486 HKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCS 545

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            VEV G  +EF  GD SHP + +IY+ L+ +    +  GY
Sbjct: 546 WVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGY 585



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/411 (32%), Positives = 211/411 (51%), Gaps = 15/411 (3%)

Query: 124 LKAC--WQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           LK C  W  +SL   +Q H   ++  L  + Y+ N L+R        +    +F    HP
Sbjct: 5   LKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHP 64

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD-LSL 240
               ++  + TLI+  V  D   +A+  +  M Q    PD      VL AC++L     +
Sbjct: 65  ----NIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHV 120

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G+ +H  +    F+   DVF+   L+ +Y K G +  ARKVFDE+P KNVVSW ++I G 
Sbjct: 121 GLSLHSLVIKTGFDW--DVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGY 178

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
              G F EAL +FR +  +GL+PD FTLV +L +C+ +G L  G+W+  Y+ ++    + 
Sbjct: 179 IESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNV 238

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
           F+  +LVDMYAKCG +++A  VF  M  +DV  ++A+I G A +G   +ALD+F EM + 
Sbjct: 239 FVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRE 298

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEG--CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
            + PD    VGV SACS  G +E G   +  +D     +  P       ++D + + G +
Sbjct: 299 NVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLS-NPVLGT--ALIDFYAKCGSV 355

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
            +A ++ K M    D  V+ A++    +   V  A  V   +V+   + DG
Sbjct: 356 AQAKEVFKGMRR-KDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDG 405


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/583 (39%), Positives = 348/583 (59%), Gaps = 14/583 (2%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--SLQNPQVYLYNF 88
           L+   S+ QLKQ HA ++ T S       LY KI  L           ++ +P  Y +N 
Sbjct: 39  LQQCLSIKQLKQIHAQLL-TNSIHKPNSFLY-KIADLKDFAYASVFFSNILDPTEYSFNV 96

Query: 89  IIQCLSNANPLEAIAL--YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           +I+ LS A    ++AL  Y  M   GL PN  T P++  AC    ++  G+  H   ++ 
Sbjct: 97  MIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRR 156

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            L  + +V ++L+ +YA CG +    K+F       +Q+DLVSW ++I  Y KM +  EA
Sbjct: 157 GLDEDGHVSHSLITMYARCGKMGDARKVFD----EISQKDLVSWNSMISGYSKMRHAGEA 212

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F +M +A  +P+ M LV VL AC +LGDL LG  +  ++ +N   L  + F+ +ALI
Sbjct: 213 VGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL--NYFMGSALI 270

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
            MY KCG++ SAR++FD M  K+ V+WN+MI G    G  +EA+ +F+ M+     PD  
Sbjct: 271 HMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQI 330

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           TL+ +L++CA+IG L+LGK V  Y  +     D ++G ALVDMYAKCG +D AF VF  M
Sbjct: 331 TLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGM 390

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG--IEPDEVTFVGVLSACSHAGLVEE 444
             ++  S+ AMI  LA HG+A +AL +F  M   G  + P+++TFVGVLSAC HAGLV+E
Sbjct: 391 PNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDE 450

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G + F  MS  + L P+ EHY CMVDLF RAG + EA D + +MP  PD  + GALLGAC
Sbjct: 451 GRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGAC 510

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           +    ++++E VM+ L+  EP   G Y++ + +Y++  RW ++ ++R  MK++ V KTPG
Sbjct: 511 QKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPG 570

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           CS +++  + +EF  GD  H + +EI+++LD ++   +  GYI
Sbjct: 571 CSWIDINSQLHEFHAGDVLHQEWIEIHQILDLLIDDLRREGYI 613


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/583 (39%), Positives = 348/583 (59%), Gaps = 14/583 (2%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--SLQNPQVYLYNF 88
           L+   S+ QLKQ HA ++ T S       LY KI  L           ++ +P  Y +N 
Sbjct: 39  LQQCLSIKQLKQIHAQLL-TNSIHKPNSFLY-KIADLKDFAYASVFFSNILDPTEYSFNV 96

Query: 89  IIQCLSNANPLEAIAL--YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           +I+ LS A    ++AL  Y  M   GL PN  T P++  AC    ++  G+  H   ++ 
Sbjct: 97  MIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRR 156

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            L  + +V ++L+ +YA CG +    K+F       +Q+DLVSW ++I  Y KM +  EA
Sbjct: 157 GLDEDGHVSHSLITMYARCGKMGDARKVFD----EISQKDLVSWNSMISGYSKMRHAGEA 212

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F +M +A  +P+ M LV VL AC +LGDL LG  +  ++ +N   L  + F+ +ALI
Sbjct: 213 VGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL--NYFMGSALI 270

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
            MY KCG++ SAR++FD M  K+ V+WN+MI G    G  +EA+ +F+ M+     PD  
Sbjct: 271 HMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQI 330

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           TL+ +L++CA+IG L+LGK V  Y  +     D ++G ALVDMYAKCG +D AF VF  M
Sbjct: 331 TLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGM 390

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG--IEPDEVTFVGVLSACSHAGLVEE 444
             ++  S+ AMI  LA HG+A +AL +F  M   G  + P+++TFVGVLSAC HAGLV+E
Sbjct: 391 PKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDE 450

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G + F  MS  + L P+ EHY CMVDLF RAG + EA D + +MP  PD  + GALLGAC
Sbjct: 451 GRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGAC 510

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           +    ++++E VM+ L+  EP   G Y++ + +Y++  RW ++ ++R  MK++ V KTPG
Sbjct: 511 QKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPG 570

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           CS +++  + +EF  GD  H + +EI+++LD ++   +  GYI
Sbjct: 571 CSWIDINSQLHEFHAGDVLHQEWIEIHQILDLLIDDLRREGYI 613


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/611 (37%), Positives = 353/611 (57%), Gaps = 49/611 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SLQNPQ 82
           LE+  S+ ++K+ HA +I TG       +   ++++    +E  NL        +  N  
Sbjct: 61  LEACTSMAKMKEIHAQMISTGLISDGFAL--SRLVAFCAISEWRNLDYCDKILNNAANLN 118

Query: 83  VYLYNFIIQC-LSNANPLEAIALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           V+ +N  I+  + + NP+ A+ LYR ML KG  +P+ YT P + K C          ++ 
Sbjct: 119 VFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEIL 178

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            + ++    S+++V N ++ +   CG + A  KLF         RDLVSW ++I  YV+ 
Sbjct: 179 GHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFD----ESCVRDLVSWNSIINGYVRC 234

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               EA   ++ M + N+ PD + ++ V+SA ++L +L+LG K+H+ I +   NL+  V 
Sbjct: 235 GLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLT--VP 292

Query: 261 IHNALIDMYLKCGNIPSAR-------------------------------KVFDEMPVKN 289
           + NAL+DMY+KC NI +A+                               ++F+EMP K+
Sbjct: 293 LANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKD 352

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           VV WN++I G     + KEAL +F  MQ   + PD  T+V  L++C+ +G L++G W+H 
Sbjct: 353 VVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHH 412

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           Y+DK+++  +  +G ALVDMYAKCG I +A  VF  M  R+  ++TA+I GLA+HG+   
Sbjct: 413 YVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHA 472

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           A+  FSEM  +G+ PDE+TF+GVLSAC H GLV++G  +F  M+  Y + P+ +HY C+V
Sbjct: 473 AISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLV 532

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL GRAG + EA +LI+SMP  PDA VWGAL    +IH  V + E     L+  +P   G
Sbjct: 533 DLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGG 592

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y+L+ N+Y   N W++A K+RK M+ER V+KTPGCS +E+ G  Y+F   DKSHP++ +
Sbjct: 593 IYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEK 652

Query: 590 IYKLLDEIMHQ 600
           IY+ L  +  Q
Sbjct: 653 IYECLTRLTRQ 663



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 213/423 (50%), Gaps = 49/423 (11%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ--H 180
           +L+AC    S+   +++HA  + T L+S+ +    L RL A C  I     L +  +  +
Sbjct: 60  LLEAC---TSMAKMKEIHAQMISTGLISDGF---ALSRLVAFCA-ISEWRNLDYCDKILN 112

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLS 239
             A  ++ SW   I+ YV+ + P  A+L + +M  + +  PD     ++   C+      
Sbjct: 113 NAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSW 172

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
              +I  ++    F+   D+F+HNA+I + + CG + +ARK+FDE  V+++VSWNS+I G
Sbjct: 173 TANEILGHVIQLGFD--SDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIING 230

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G   EA D++ +M  L + PD+ T++ V+++ A +  L LG+ +H  +++  +N  
Sbjct: 231 YVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLT 290

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG-------------- 405
             + NAL+DMY KC  I+ A  +F +M  + V S+T M++G A  G              
Sbjct: 291 VPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPE 350

Query: 406 -----------------KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC-- 446
                            ++ +AL +F EM    + PD++T V  LSACS  G ++ G   
Sbjct: 351 KDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWM 410

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
            H++D    +NL         +VD++ + G I++A+ + + MP   ++  W A++    +
Sbjct: 411 HHYVDK---HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMP-GRNSLTWTAIICGLAL 466

Query: 507 HAK 509
           H +
Sbjct: 467 HGQ 469


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/545 (38%), Positives = 338/545 (62%), Gaps = 32/545 (5%)

Query: 77  SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           ++Q P   ++N +I+  + +++P+ ++ LY  M+  GLLPN+YT P++LK+C +S++   
Sbjct: 23  TIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTE 82

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ------------- 182
           GQQ+H   +K     ++YV  +L+ +Y     ++  +K+F    H               
Sbjct: 83  GQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYAS 142

Query: 183 ------AQR--------DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV 228
                 AQ+        D+VSW  +I  Y +     EA+  F +M + N+RPD    V V
Sbjct: 143 RGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTV 202

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           LSAC+  G + LG ++H ++ D+ F+   ++ I NALID+Y KCG + +A  +F  +  K
Sbjct: 203 LSACAHSGSIELGRQVHSWVDDHGFD--SNLKIVNALIDLYSKCGEVETACGLFQGLSYK 260

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           +V+SWN++I G TH   +KEAL +F+ M   G  P+D T++ VL +CA++G +++G+W+H
Sbjct: 261 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIH 320

Query: 349 TYLDK--NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
            Y+DK    +     +  +L+DMYAKCG I+ A  VF SM  + + S+ AMI G A+HG+
Sbjct: 321 VYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGR 380

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
           A  + D+FS M ++GIEPD++TFVG+LSACSH+G+++ G   F  M++ Y + P+ EHYG
Sbjct: 381 ADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYG 440

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CM+DL G +GL +EA ++I +M + PD  +W +LL ACK+H  VELAE   +NL++ EPE
Sbjct: 441 CMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPE 500

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
              +YIL++NIY+S  RW++  ++R  +  + +KK PGCS +EV    +EF  GDK HP+
Sbjct: 501 NPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQ 560

Query: 587 TLEIY 591
             EIY
Sbjct: 561 NREIY 565



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 118/260 (45%), Gaps = 33/260 (12%)

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +P A  VF+ +   N + WN+MI G         +L ++  M  LGL P+ +T   +L S
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA       G+ +H  + K   + D ++  +L+ MY +  R++ A+ VF     RDV SY
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 395 TAMIVGLAIHGK-----------------AW--------------KALDIFSEMSQVGIE 423
           TA+I G A  G                  +W              +AL++F EM ++ + 
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           PDE T+V VLSAC+H+G +E G +        +      +    ++DL+ + G +  A  
Sbjct: 194 PDESTYVTVLSACAHSGSIELG-RQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACG 252

Query: 484 LIKSMPLVPDAFVWGALLGA 503
           L + +    D   W  L+G 
Sbjct: 253 LFQGLSY-KDVISWNTLIGG 271


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/615 (36%), Positives = 363/615 (59%), Gaps = 51/615 (8%)

Query: 35  KSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSR-GNEIEN-----LSLQNPQVYL 85
           K+  Q KQ H+  I  G   +P  Q ++    +   SR G  +       + +  P V +
Sbjct: 45  KTTDQFKQLHSQSITRGVAPNPTFQKKLF---VFWCSRLGGHVSYAYKLFVKIPEPDVVV 101

Query: 86  YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ-SLRVGQQVHAYS 143
           +N +I+  S  +   E + LY  ML +G+ P+++T P++L    +   +L  G+++H + 
Sbjct: 102 WNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHV 161

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K  L SN+YV N L+++Y++CGL+     +F  R     + D+ SW  +I  Y +M   
Sbjct: 162 VKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRR----CKEDVFSWNLMISGYNRMKEY 217

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            E+I    +M +  + P  + L++VLSACSK+ D  L  ++H Y+++      P + + N
Sbjct: 218 EESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSE--CKTEPSLRLEN 275

Query: 264 ALIDMYLKCG-------------------------------NIPSARKVFDEMPVKNVVS 292
           AL++ Y  CG                               N+  AR  FD+MPV++ +S
Sbjct: 276 ALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRIS 335

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W  MI G    G F E+L+IFR MQ  G+ PD+FT+V VL +CA++G LE+G+W+ TY+D
Sbjct: 336 WTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYID 395

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           KN I  D  +GNAL+DMY KCG  ++A  VF  M  RD +++TAM+VGLA +G+  +A+ 
Sbjct: 396 KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIK 455

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           +F +M  + I+PD++T++GVLSAC+H+G+V++  K F  M   + ++P   HYGCMVD+ 
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDML 515

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           GRAGL++EA ++++ MP+ P++ VWGALLGA ++H    +AE+  + ++  EP+    Y 
Sbjct: 516 GRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYA 575

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           L+ NIY+   RWK+  ++R+K+ +  +KKTPG SL+EV G  +EF  GDKSH ++ EIY 
Sbjct: 576 LLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYM 635

Query: 593 LLDEIMHQSKNHGYI 607
            L+E+  +S    Y+
Sbjct: 636 KLEELAQESTFAAYL 650


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/615 (36%), Positives = 363/615 (59%), Gaps = 51/615 (8%)

Query: 35  KSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSR-GNEIEN-----LSLQNPQVYL 85
           K+  Q KQ H+  I  G   +P  Q ++    +   SR G  +       + +  P V +
Sbjct: 45  KTTDQFKQLHSQSITRGVAPNPTFQKKLF---VFWCSRLGGHVSYAYKLFVKIPEPDVVV 101

Query: 86  YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ-SLRVGQQVHAYS 143
           +N +I+  S  +   E + LY  ML +G+ P+++T P++L    +   +L  G+++H + 
Sbjct: 102 WNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHV 161

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K  L SN+YV N L+++Y++CGL+     +F  R     + D+ SW  +I  Y +M   
Sbjct: 162 VKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRR----CKEDVFSWNLMISGYNRMKEY 217

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            E+I    +M +  + P  + L++VLSACSK+ D  L  ++H Y+++      P + + N
Sbjct: 218 EESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSE--CKTEPSLRLEN 275

Query: 264 ALIDMYLKCG-------------------------------NIPSARKVFDEMPVKNVVS 292
           AL++ Y  CG                               N+  AR  FD+MPV++ +S
Sbjct: 276 ALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRIS 335

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W  MI G    G F E+L+IFR MQ  G+ PD+FT+V VL +CA++G LE+G+W+ TY+D
Sbjct: 336 WTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYID 395

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           KN I  D  +GNAL+DMY KCG  ++A  VF  M  RD +++TAM+VGLA +G+  +A+ 
Sbjct: 396 KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIK 455

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           +F +M  + I+PD++T++GVLSAC+H+G+V++  K F  M   + ++P   HYGCMVD+ 
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDML 515

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           GRAGL++EA ++++ MP+ P++ VWGALLGA ++H    +AE+  + ++  EP+    Y 
Sbjct: 516 GRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYA 575

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           L+ NIY+   RWK+  ++R+K+ +  +KKTPG SL+EV G  +EF  GDKSH ++ EIY 
Sbjct: 576 LLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYM 635

Query: 593 LLDEIMHQSKNHGYI 607
            L+E+  +S    Y+
Sbjct: 636 KLEELAQESTFAAYL 650


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/507 (41%), Positives = 324/507 (63%), Gaps = 13/507 (2%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P  A+++YR M+  G +P+ +T P +LKAC      R G+QVH   +K  LL++ YV N+
Sbjct: 86  PQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNS 145

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+R Y  CG      K+F         RD+VSW +LI  ++K  +  EAI  FF M   +
Sbjct: 146 LIRCYGACGDFSCAGKVFD----EMLVRDVVSWNSLISGFMKAGHFDEAISVFFRM---D 198

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           + P    LV VL+AC++ GDL  G  IH  I +  F +  ++ + NA++DMY+K G    
Sbjct: 199 VEPSMTTLVSVLAACARNGDLCTGKGIHGVI-ERRFKV--NLVLGNAMLDMYVKNGCFYE 255

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A+ +FDE+P +++VSW  MI GL      K++L++F  M+ LG+ PD   L  VL++CA+
Sbjct: 256 AKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACAS 315

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +G L+ G WVH Y+++  I  D  IG A+VDMYAKCG I+ A  +F SM  R+ +++ A+
Sbjct: 316 LGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNAL 375

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           + GLA+HG   +AL++F  M   G++P+E+TF+ +L+AC H GLV+EG K+F +MS++YN
Sbjct: 376 LCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYN 435

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           L P+ EHYGCM+DLF RAGL+ EA++L ++MP+ PD  +WG LL AC     +EL+  + 
Sbjct: 436 LLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQ 495

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           + ++  + +  G ++L++NI +   RW    +LR+ MK+R V+K PG S++EV G+ +EF
Sbjct: 496 DYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDGKAHEF 555

Query: 578 RKGDKSHPKTLEIYK---LLDEIMHQS 601
             GD SH +T EIYK   L++ + H+S
Sbjct: 556 VVGDISHLQTEEIYKVLNLINSVYHES 582



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/408 (29%), Positives = 207/408 (50%), Gaps = 17/408 (4%)

Query: 118 YTLPYVL-KACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
           + L +VL  +    ++LR+ +Q+HA  + + L+ + +V + +M  +A    ++       
Sbjct: 2   FNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFA--NFVEYGDYACD 59

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
           + +    +     + +LI  YV  ++P  A+  +  M +    PD     ++L ACS   
Sbjct: 60  YLEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFS 119

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
               G ++H  +      L  D ++ N+LI  Y  CG+   A KVFDEM V++VVSWNS+
Sbjct: 120 GSREGRQVHGVVV--KLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSL 177

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           I+G    G F EA+ +F RM    ++P   TLV VL +CA  G L  GK +H  +++   
Sbjct: 178 ISGFMKAGHFDEAISVFFRMD---VEPSMTTLVSVLAACARNGDLCTGKGIHGVIER-RF 233

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
             +  +GNA++DMY K G   +A  +F  +  RD+ S+T MI GL       ++L++FS 
Sbjct: 234 KVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSM 293

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEG--CKHFLDMSRV-YNLQPQTEHYGCMVDLFG 473
           M  +GI PD +    VLSAC+  G ++ G     +++   + +++   T     +VD++ 
Sbjct: 294 MRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTA----IVDMYA 349

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
           + G I  AL +  SM    + F W ALL    +H  V  A  + E ++
Sbjct: 350 KCGCIEMALKIFYSMSQ-RNTFTWNALLCGLAMHGLVHEALNLFEVMI 396



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 119/245 (48%), Gaps = 12/245 (4%)

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           +P +++ L+  M   G+ P+   L  VL AC    +L  G  VH Y  +  +  ++++  
Sbjct: 283 HPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGT 342

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            ++ +YA CG I+   K+F    +  +QR+  +W  L+          EA+  F  M  +
Sbjct: 343 AIVDMYAKCGCIEMALKIF----YSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIIS 398

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            ++P+ +  + +L+AC   G +  G K    ++   +NL P +  +  +ID++ + G + 
Sbjct: 399 GVKPNEITFLAILTACCHCGLVDEGRKYFDNMS-KLYNLLPKLEHYGCMIDLFCRAGLLE 457

Query: 277 SARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQG--LGLKPDDFTLVCVLN 333
            A ++   MP+K +V+ W  ++   T  G     +++  R+Q   L L  DD  +  +L+
Sbjct: 458 EAVELARTMPMKPDVLIWGLLLNACTTVGN----IELSHRIQDYILELDHDDSGVFVLLS 513

Query: 334 SCANI 338
           + + I
Sbjct: 514 NISAI 518


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/615 (37%), Positives = 356/615 (57%), Gaps = 47/615 (7%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS-------LSRGNEIENLSLQNPQV 83
           L S+ S+  LKQ HA I+++      T +L   +IS       L     + NL +  P+ 
Sbjct: 30  LSSATSLTHLKQVHAQILRS-KLDRSTSLLVKLVISSCALSSSLDYALSVFNL-IPKPET 87

Query: 84  YLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           +L N  ++ LS +  P + + +Y  M  +GL  + ++ P +LKA  + +SL  G ++H  
Sbjct: 88  HLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGL 147

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
           + K    S+ +V   L+R+YA CG I     +F    H    RD+V+W+ +I  Y +   
Sbjct: 148 AAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFH----RDVVTWSIMIDGYCQSGL 203

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             +A+L F +M   N+ PD M+L  VLSAC + G+LS G  IH +I +N  N+  D  + 
Sbjct: 204 FNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMEN--NIVVDPHLQ 261

Query: 263 NALIDMYLKCGN-------------------------------IPSARKVFDEMPVKNVV 291
           +AL+ MY  CG+                               I +AR VF++M  K++V
Sbjct: 262 SALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLV 321

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
            W++MI+G       +EAL++F  MQ LG+KPD  T++ V+ +CA++G L+  KW+H ++
Sbjct: 322 CWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFV 381

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
           DKN       I NAL++MYAKCG +++A  +F  M  ++V S+T MI   A+HG A  AL
Sbjct: 382 DKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSAL 441

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
             F +M    IEP+ +TFVGVL ACSHAGLVEEG K F  M   +N+ P+  HYGCMVDL
Sbjct: 442 RFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDL 501

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
           FGRA L+REAL+L+++MPL P+  +WG+L+ AC++H ++EL E   + L+  +P+ DGA+
Sbjct: 502 FGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAH 561

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           + ++NIY+   RW++  ++RK MK + + K  GCS  E+  E +EF   D+SH    EIY
Sbjct: 562 VFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIY 621

Query: 592 KLLDEIMHQSKNHGY 606
           + L E++ + K  GY
Sbjct: 622 EKLYEVVSKLKLVGY 636


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/630 (37%), Positives = 377/630 (59%), Gaps = 52/630 (8%)

Query: 24  LLHQSPRL---ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII---SLSRGNEI---- 73
           +L Q P L   E  K++   KQ H+ IIKTG   + T  +  K+I   ++S   ++    
Sbjct: 25  ILEQHPYLNLLEKCKNINTFKQIHSLIIKTG--LNNTVFVQSKLIHFCAVSPSGDLSYAL 82

Query: 74  ----ENLSLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACW 128
               EN       V+++N +I+    +++PL ++ L+  ML  G+ PN++T P++ K+C 
Sbjct: 83  SLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCT 142

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH------------ 176
           ++++   G+Q+HA+++K AL  N +V  +++ +YA  G +     +F             
Sbjct: 143 KAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTA 202

Query: 177 -----------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
                            F + P   +D+VSW  +I  YV+     EAI+ F++M +AN+ 
Sbjct: 203 LITGYVSQGCLDDARRLFDEIPV--KDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVL 260

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+   +V+VLSAC       LG  I  ++ DN F    ++ + NALIDMY KCG    AR
Sbjct: 261 PNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGF--GSNLQLTNALIDMYCKCGETDIAR 318

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++FD +  K+V+SWN+MI G ++   ++EAL +F  M    +KP+D T + +L++CA +G
Sbjct: 319 ELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLG 378

Query: 340 WLELGKWVHTYLDKNHINT-DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
            L+LGKWVH Y+DKN  N+ +  +  +L+DMYAKCG I+ A  VFRSM  R++ S+ AM+
Sbjct: 379 ALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAML 438

Query: 399 VGLAIHGKAWKALDIFSEMSQVGI-EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
            G A+HG A +AL +FSEM   G+  PD++TFVGVLSAC+ AGLV+ G ++F  M + Y 
Sbjct: 439 SGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYG 498

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           + P+ +HYGCM+DL  RA    EA  L+K+M + PD  +WG+LL ACK H +VE  E V 
Sbjct: 499 ISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVA 558

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           E L + EPE  GA++L++NIY+   RW +  ++R ++ ++ +KK PGC+ +E+ G+ +EF
Sbjct: 559 ERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEF 618

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             GDK HP+   IYK+L+E+    + +G++
Sbjct: 619 LVGDKFHPECNNIYKMLNEVDKLLEENGFV 648


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/611 (37%), Positives = 352/611 (57%), Gaps = 49/611 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SLQNPQ 82
           LE+  S+ ++K+ HA +I TG       +   ++++    +E  NL        +  N  
Sbjct: 61  LEACTSMAKMKEIHAQMISTGLISDGFAL--SRLVAFCAISEWRNLDYCDKILNNAANLN 118

Query: 83  VYLYNFIIQC-LSNANPLEAIALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            + +N  I+  + + NP+ A+ LYR ML KG  +P+ YT P + K C          ++ 
Sbjct: 119 XFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEIL 178

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            + ++    S+++V N ++ +   CG + A  KLF         RDLVSW ++I  YV+ 
Sbjct: 179 GHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFD----ESCVRDLVSWNSIINGYVRC 234

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               EA   ++ M + N+ PD + ++ V+SA ++L +L+LG K+H+ I +   NL+  V 
Sbjct: 235 GLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLT--VP 292

Query: 261 IHNALIDMYLKCGNIPSAR-------------------------------KVFDEMPVKN 289
           + NAL+DMY+KC NI +A+                               ++F+EMP K+
Sbjct: 293 LANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKD 352

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           VV WN++I G     + KEAL +F  MQ   + PD  T+V  L++C+ +G L++G W+H 
Sbjct: 353 VVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHH 412

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           Y+DK+++  +  +G ALVDMYAKCG I +A  VF  M  R+  ++TA+I GLA+HG+   
Sbjct: 413 YVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHA 472

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           A+  FSEM  +G+ PDE+TF+GVLSAC H GLV++G  +F  M+  Y + P+ +HY C+V
Sbjct: 473 AISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLV 532

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL GRAG + EA +LI+SMP  PDA VWGAL    +IH  V + E     L+  +P   G
Sbjct: 533 DLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGG 592

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y+L+ N+Y   N W++A K+RK M+ER V+KTPGCS +E+ G  Y+F   DKSHP++ +
Sbjct: 593 IYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEK 652

Query: 590 IYKLLDEIMHQ 600
           IY+ L  +  Q
Sbjct: 653 IYECLTRLTRQ 663



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 212/423 (50%), Gaps = 49/423 (11%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ--H 180
           +L+AC    S+   +++HA  + T L+S+ +    L RL A C  I     L +  +  +
Sbjct: 60  LLEAC---TSMAKMKEIHAQMISTGLISDGF---ALSRLVAFCA-ISEWRNLDYCDKILN 112

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLS 239
             A  +  SW   I+ YV+ + P  A+L + +M  + +  PD     ++   C+      
Sbjct: 113 NAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSW 172

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
              +I  ++    F+   D+F+HNA+I + + CG + +ARK+FDE  V+++VSWNS+I G
Sbjct: 173 TANEILGHVIQLGFD--SDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIING 230

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G   EA D++ +M  L + PD+ T++ V+++ A +  L LG+ +H  +++  +N  
Sbjct: 231 YVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLT 290

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG-------------- 405
             + NAL+DMY KC  I+ A  +F +M  + V S+T M++G A  G              
Sbjct: 291 VPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPE 350

Query: 406 -----------------KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC-- 446
                            ++ +AL +F EM    + PD++T V  LSACS  G ++ G   
Sbjct: 351 KDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWM 410

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
            H++D    +NL         +VD++ + G I++A+ + + MP   ++  W A++    +
Sbjct: 411 HHYVDK---HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMP-GRNSLTWTAIICGLAL 466

Query: 507 HAK 509
           H +
Sbjct: 467 HGQ 469


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/560 (40%), Positives = 333/560 (59%), Gaps = 12/560 (2%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQH---QTQILYDKIISLSRGNEIENLSLQNPQ--VYL 85
           L    S+  L + HA ++  G  Q+    T+++          +    +  Q P+  V+L
Sbjct: 36  LNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFL 95

Query: 86  YNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I+  ++A P E A+ALY  M   GL P+ YT P+V+++C    +LR G++VH   +
Sbjct: 96  WNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIV 155

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K    S+V+V ++L+ +Y+  G    +  +F         R++VSWT +I  YV+  Y  
Sbjct: 156 KHGFDSDVFVQSSLVAMYSQSGETLGMELVFG----EMVVRNIVSWTAVIAGYVQNRYFK 211

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           E +  F +M  +  +P+ + LV VL AC+ L  L+LG  IH Y       + PDV + NA
Sbjct: 212 EGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIK--LGVDPDVSLTNA 269

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LI +Y KCGN+ +AR +FD M V+N+VSWN+MIA          A+ +FRRMQ   +  D
Sbjct: 270 LIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFD 329

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             T+V V+++CA++G L  G+W+H  + +  +  +  I NAL+DMYAKCG ID A  VF 
Sbjct: 330 YITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFE 389

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            + CR V S+T+MI   A HG    AL +FS M   G++P+  TF  V +AC H+GLVEE
Sbjct: 390 RLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEE 449

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G KHF  M R Y++ P  EH  CMVDL GRAG + EA + I  MP+ PD  VWGALLG+C
Sbjct: 450 GRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSC 509

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           +IH+ +ELAE+V E L   +P+    Y+LM+NIY+   RW++A +LRK M+ER++KK PG
Sbjct: 510 RIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPG 569

Query: 565 CSLVEVYGEFYEFRKGDKSH 584
            SLVEV   F+ F  G +S 
Sbjct: 570 HSLVEVNRRFHTFLSGSRSQ 589


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/589 (38%), Positives = 354/589 (60%), Gaps = 23/589 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKT----------GSPQHQTQILYDKI-ISLSRGNEIENLSLQ 79
           L+  K+   L+Q HA ++KT             +    +L D I  +LS  N I+     
Sbjct: 28  LQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDK---- 83

Query: 80  NPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
            P+   YN +I+ L+   +P  A+ L+++M  K +  + +T   VLKAC + ++LR G+Q
Sbjct: 84  -PESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQ 142

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           VHA  +K+   SN +V NTL+++YA CG I     +F        +R +V+W +++  Y 
Sbjct: 143 VHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFD----GMPERSIVAWNSMLSGYT 198

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           K     E +  F  + +  +  D + ++ VL AC +L +L +G  I  YI      L  +
Sbjct: 199 KNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSK--GLRRN 256

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             +  +LIDMY KCG + +ARK+FDEM  ++VV+W++MI+G     + KEAL++F  MQ 
Sbjct: 257 NTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQK 316

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
             + P++ T+V VL SCA +G  E GKWVH Y+ K  +     +G  L+D YAKCG ID+
Sbjct: 317 GNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDR 376

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           +  VF+ M  ++V+++TA+I GLA +G+   AL+ FS M +  ++P++VTF+GVLSACSH
Sbjct: 377 SVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSH 436

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           A LV++G   F  M R ++++P+ EHYGCMVD+ GRAG + EA   I +MP  P+A VW 
Sbjct: 437 ACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWR 496

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
            LL +C+ H  +E+AE  +E++ R EP   G YIL++N Y+   R ++A+++R  +KE++
Sbjct: 497 TLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKE 556

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +KK PGCSL+E+ G  +EF   D  H  + EI+  LD++M Q K  GY+
Sbjct: 557 IKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYV 605


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/649 (35%), Positives = 377/649 (58%), Gaps = 51/649 (7%)

Query: 2   ASPLTVASGSRYNDIN--TFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG--SPQHQT 57
           A PL++     +++ N  T       H    ++   S+ QLKQ HA +I+TG  S  +  
Sbjct: 7   AQPLSLPRHPNFSNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSA 66

Query: 58  QILYDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIK 111
             L+  I +LS    +E        +  P  + +N +I+   S  +P+ +I  + +M+  
Sbjct: 67  SKLF-AIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSS 125

Query: 112 --GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK 169
                PN YT P+++KA  +  SL +GQ +H  ++K+A+ S+V+V N+L+  Y  CG + 
Sbjct: 126 ESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLD 185

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
           +  K+F   +    ++D+VSW ++I  +V+   P +A+  F  M   +++   + +V VL
Sbjct: 186 SACKVFTTIK----EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 241

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM---- 285
           SAC+K+ DL  G ++  YI +N  N+  ++ + NA++DMY KCG+I  A+++FD M    
Sbjct: 242 SACAKIRDLEFGRRVCSYIEENRVNV--NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKD 299

Query: 286 ---------------------------PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ- 317
                                      P K++V+WN++I+     G+  EAL +F  +Q 
Sbjct: 300 NVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQL 359

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              +K +  TLV  L++CA +G LELG+W+H+Y+ KN I  + ++ +AL+ MY+KCG ++
Sbjct: 360 QKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLE 419

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
           +A  VF S++ RDV+ ++AMI GLA+HG   +A+D+F +M +  ++P+ VTF  V  ACS
Sbjct: 420 KAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACS 479

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           H GLV+E    F  M   Y + P+ +HY C+VD+ GR+G + +A+  I++MP+ P   VW
Sbjct: 480 HTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVW 539

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GALLGACKIHA + LAE+    L+  EP  DGA++L++NIY+   +W    +LRK M+  
Sbjct: 540 GALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVT 599

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            +KK PGCS +E+ G  +EF  GD +HP + ++Y  L E+M + K++GY
Sbjct: 600 GLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGY 648


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/613 (38%), Positives = 351/613 (57%), Gaps = 59/613 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYD-----KIISLSRGNEIENL--------S 77
           LE+ KS  QLKQ  A +I TG       ++ D     ++IS    +E  NL        +
Sbjct: 60  LENCKSFSQLKQIQAQMILTG-------LILDGFASSRLISFCAISESRNLDYCIKILNN 112

Query: 78  LQNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRV 135
           LQNP V+ +N +I+ C+ + NP + + LY+ ML + G  P+ YT  ++ K C       +
Sbjct: 113 LQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYM 172

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G ++    +K     ++Y++N ++ +    G     HK+F         RDLVSW +LI 
Sbjct: 173 GFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFD----EGCVRDLVSWNSLIN 228

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            YV+   P EA+  +  M   +++PD + ++ V+SAC++L  L LG +IHRYI ++  NL
Sbjct: 229 GYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNL 288

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFD-------------------------------E 284
              + + NAL+DMY+KCG++ + + +FD                               +
Sbjct: 289 K--ISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHD 346

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           MP KNVV+WN+MI          EAL++FR MQ   +KPD  T++  L++C+ +G L+ G
Sbjct: 347 MPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTG 406

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
            W H Y+ K++++ D  +G AL+DMYAKCG + +A  VF  M  R+  ++TA+I GLA++
Sbjct: 407 MWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALY 466

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G    A+  FS+M   G+ PDE+TF+GVL+AC H GLVEEG K+F  M   +NL PQ +H
Sbjct: 467 GNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKH 526

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           Y CMV+L GRAGL+ EA +LIK+MP+  DA VWGAL  AC IH  + + E     L+  +
Sbjct: 527 YSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLD 586

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           P   G Y+L+ N+Y    +W+EA  +RK M ER V+KTPG S +EV G   EF   DKSH
Sbjct: 587 PHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIVRDKSH 646

Query: 585 PKTLEIYKLLDEI 597
           P++ +IY+  + I
Sbjct: 647 PQSEQIYECFNLI 659


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/596 (37%), Positives = 356/596 (59%), Gaps = 20/596 (3%)

Query: 19  FQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQ------TQILYDKIISLSRGNE 72
           F +L LL+   R    K++  LKQ HA +I +G    +      ++     I  +    +
Sbjct: 3   FLKLRLLNSIHR---CKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFD 59

Query: 73  IENLSLQNPQVYLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
             N +  +     YN +I    S+  P  A  +Y  ++  G +P+ YT P VLKAC +  
Sbjct: 60  FLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFL 119

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
            ++ G+QVH  ++K   L ++YV N+L+  Y+VCG      ++F         RD+VSWT
Sbjct: 120 GVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFD----EMLVRDVVSWT 175

Query: 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
            LI  YV+     EAI  F  M   ++ P+    V VL AC ++G LS+G  +H  +   
Sbjct: 176 GLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKR 232

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
            F +   + + NAL+DMY+KC  +  ARK+FDE+P +++VSW S+I+GL    Q K++L+
Sbjct: 233 AFGIG--LVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLE 290

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           +F  MQ  G++PD   L  VL++CA++G L+ G+WV  Y+++  I  D  IG ALVDMYA
Sbjct: 291 LFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYA 350

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           KCG I+ A  +F  +  R+++++ A++ GLA+HG   +AL  F  M   GI P+EVTF+ 
Sbjct: 351 KCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLA 410

Query: 432 VLSACSHAGLVEEGCKHFLDM-SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
           +L+AC H+GLV EG  +F  M S+ +N  P+ EHYGCM+DL  RAGL+ EA   I++MPL
Sbjct: 411 ILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPL 470

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            PD  +WGALL ACK +  VEL++ ++ +L+  + +  G Y+L++NIY++  RW +  ++
Sbjct: 471 PPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRV 530

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           R+ MK++ ++K PG S++EV GE +EF  GD +H +  +I+ LL+ + +Q    G+
Sbjct: 531 RRLMKDKGIRKFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHILLNILANQVYLEGH 586


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/575 (37%), Positives = 358/575 (62%), Gaps = 18/575 (3%)

Query: 36  SVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIEN-----LSLQNPQVYLYN 87
           S+ + KQ HA +++T    +P   ++++    ++LS   ++         +QNP  ++ N
Sbjct: 23  SISKTKQAHALLLRTHLLHNPLFSSKLI--SFLALSHSGDLNYARKLFTQMQNPDPFICN 80

Query: 88  FIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
            +I+  + + NP EA++LY  M+ +G+  + YT P+VL AC +  ++++G++ H   +K 
Sbjct: 81  TMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKN 140

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
              S+++V N L++ Y  CG       +F         RD+V+W  +I A++      +A
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVFD----ESTVRDVVTWNIMINAHLNKGLSEKA 196

Query: 207 ILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
                +M +  NLRPD + +V ++ AC++LG+L  G  +H Y       L  ++ ++NA+
Sbjct: 197 FDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY--SKELGLDENLRVNNAI 254

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           +DMY KC +I SA++VF+ +  K+V+SW SM++GL   G F+EAL +F++MQ   ++ D+
Sbjct: 255 LDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDE 314

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
            TLV VL++CA  G L+ GK++H  +DK  IN D  +  ALVDMYAKCG ID A  VFR 
Sbjct: 315 ITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRR 374

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
           M+ R+V+++ A+I GLA+HG    A+ +F +M    + PD+VTF+ +L ACSHAGLV+EG
Sbjct: 375 MRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEG 434

Query: 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505
              F  M   + ++P+ EHYGC+VDL  RA  + +AL  I++MP+  ++ +W  LLGAC+
Sbjct: 435 LAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACR 494

Query: 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGC 565
                +LAE +   ++  EP+  G Y++++N+Y+  ++W  ALKLRK+MK + ++KTPGC
Sbjct: 495 SGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGC 554

Query: 566 SLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
           S +E+ G  ++F  GD+SH +T +IY +++E+  +
Sbjct: 555 SWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRR 589


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/552 (38%), Positives = 339/552 (61%), Gaps = 42/552 (7%)

Query: 77  SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           ++Q P + ++N + +  + +++P+ A+ LY  M+  GLLP++YT P++LK+C +S+  + 
Sbjct: 48  TIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKE 107

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH--------------- 180
           GQQ+H + +K     ++YV  +L+ +YA  G ++   K+F    H               
Sbjct: 108 GQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVS 167

Query: 181 ----PQAQR--------DLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVI 227
                 AQ+        D+VSW  +I  YV+     EA+  F +M    N+RPD   +V 
Sbjct: 168 RGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVT 227

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           V+SAC++   + LG  +H +I D+ F  + ++ I NALID+Y K G + +A ++FD +  
Sbjct: 228 VVSACAQSDSIELGRHVHSWINDHGF--ASNLKIVNALIDLYSKFGEVETACELFDGLWN 285

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K+V+SWN++I G TH   +KEAL +F+ M   G  P+D T++ +L +CA++G +++G+W+
Sbjct: 286 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 345

Query: 348 HTYLDKNHINTDGFIGN------ALVDMYAKCGRIDQAFGVF-RSMKCRDVYSYTAMIVG 400
           H Y++K      G + N      +L+DMYAKCG ID A  VF  SM  R + ++ AMI G
Sbjct: 346 HVYINKK---LKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISG 402

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
            A+HG+A  A DIFS M   GIEPD++TFVG+LSACSH+G+++ G   F  M+R Y + P
Sbjct: 403 FAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITP 462

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
           + EHYGCM+DL G +GL +EA ++I +MP+ PD  +W +LL ACKIH  +EL E   + L
Sbjct: 463 KLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKL 522

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV-KKTPGCSLVEVYGEFYEFRK 579
           ++ EP   G+Y+L++NIY++  RW E  K+R  + ++ + KK PGCS +E+    +EF  
Sbjct: 523 IKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFII 582

Query: 580 GDKSHPKTLEIY 591
           GDK HP+  EIY
Sbjct: 583 GDKLHPQNREIY 594


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/629 (36%), Positives = 355/629 (56%), Gaps = 64/629 (10%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-------------- 76
           LES KS  Q  Q HA  I  G        L+ +I S+SR     +L              
Sbjct: 16  LESCKSFKQGLQIHAQTIVNG--------LHHQIFSISRLISFFSLLGSKDGLDHSRLLF 67

Query: 77  -SLQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSL 133
             +  P ++++N +I+  S + NP EAI LY  M+ KG+ P N +T P++L +C +  SL
Sbjct: 68  SQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSL 127

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
             G +VH++ +K    S+++V N L+ LY+V G +     LF         RDLVS+ T+
Sbjct: 128 EPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFD----ESLVRDLVSYNTM 183

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I+ Y +++ P  A+  F +M  + + PD    V + S CS L + ++G +IH  +  N  
Sbjct: 184 IKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLR 243

Query: 254 NLSPDVFIHNALIDMYLKCG--------------------------------NIPSARKV 281
           ++  ++ + +A++DMY KCG                                 I  ARK+
Sbjct: 244 SIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKL 303

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           F+ M  ++V+SW +MI+G +  GQ  EAL++F+ M+ LG+KPD+ TLV VL++CA +G  
Sbjct: 304 FNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAF 363

Query: 342 ELGKWV-HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--KCRDVYSYTAMI 398
           +LGK + H Y++    N +  +  A++DMYAKCG ID A  +FR +    +  + + +MI
Sbjct: 364 DLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMI 423

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            GLA HG    A+ +F E+   G++PDEVTFVGVL AC H+GL+EEG K F  M   Y +
Sbjct: 424 AGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGI 483

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +PQ EHYGCMVDL GR G + EA DL++ MP   ++ +W ALL AC+ H  V++ EI  +
Sbjct: 484 KPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQ 543

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            L+  E +    Y+L++NI +  N+W+EA ++RK M++  ++K PG S +E+ G  + F 
Sbjct: 544 KLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFV 603

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             DKSHP+  EI  +L ++  + K+ GY+
Sbjct: 604 ASDKSHPQGKEIELMLKDMAMRLKSAGYV 632


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/543 (40%), Positives = 324/543 (59%), Gaps = 44/543 (8%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQ----SQSLRVGQQVHAYSMKTALLSNVYVF 155
           +A+A Y  ML +G  P+ YT P +LKA  +    S S    + VHA+ ++  +  N +V 
Sbjct: 2   DAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVA 61

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           ++L+  Y   G   A   L      P      V+W  LI  + +     E+  SF DM +
Sbjct: 62  SSLVAAYTAGGDGAAARALVGECDTP------VAWNALISGHNRGGRFGESCGSFVDMAR 115

Query: 216 ANLRPDGMILVIVLSACSK-LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           A   P  +  V VLSAC K   D+ LG+++H  +  +   + PD+ + NAL+DMY +C +
Sbjct: 116 AGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGS--GVLPDLRVENALVDMYAECAD 173

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ----------------------------- 305
           + SA KVFD M V++VVSW S+++GL   GQ                             
Sbjct: 174 MGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWA 233

Query: 306 --FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
             F+EAL++FR MQ   +  D+FT+V V+ +CA +G LE+G+WV  Y+ +  I  D F+G
Sbjct: 234 ARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVG 293

Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423
           NAL+DMY+KCG I++A  VF+ M  RD +++TA+I+GLA++G   +A+++F  M +V   
Sbjct: 294 NALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSET 353

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           PDEVTF+GVL+AC+HAGLV++G + FL M   YN+ P   HYGC++DL GRAG I EALD
Sbjct: 354 PDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALD 413

Query: 484 LIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543
            I  MP+ P++ +WG LL AC++H   E+ E+V E L+  +PE    YIL++NIY+  NR
Sbjct: 414 TIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNR 473

Query: 544 WKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603
           W++  +LR  + E+ +KK PGCSL+E+ G  +EF  GD+SHP + EIY  L+ I+    N
Sbjct: 474 WEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNN 533

Query: 604 HGY 606
            GY
Sbjct: 534 VGY 536


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/551 (37%), Positives = 335/551 (60%), Gaps = 32/551 (5%)

Query: 77  SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           ++Q P + ++N + +  + + +P+ A+ LY  M+  GLLPN+YT P++LK+C + ++ + 
Sbjct: 22  TIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASKE 81

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ----------- 184
           G Q+H + +K     ++YV  +L+ +Y     ++  HK+F    H               
Sbjct: 82  GLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYAS 141

Query: 185 ----------------RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV 228
                           +D+VSW  +I  YV+     EA+  F +M + N+RPD   +V V
Sbjct: 142 RGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTV 201

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           +SA ++ G + LG ++H +I D+ F    ++ I NALID Y KCG + +A  +F  +  K
Sbjct: 202 ISASARSGSIELGRQVHSWIADHGF--GSNLKIVNALIDFYSKCGEMETACGLFLGLSYK 259

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           +V+SWN +I G TH   +KEAL +F+ M   G  P+D T++ +L++CA++G +++G+W+H
Sbjct: 260 DVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIH 319

Query: 349 TYLDK--NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
            Y+DK    +     +  +L+DMY+KCG I+ A  VF SM  + + ++ AMI G A+HG+
Sbjct: 320 VYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGR 379

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
           A  A DIFS M +  I+PD++TFVG+LSACSHAG+++ G   F  M+  Y + P+ EHYG
Sbjct: 380 ANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYG 439

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CM+DL G +GL +EA ++I +M + PD  +W +LL ACK+H  VEL E   +NL + EP 
Sbjct: 440 CMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPN 499

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
             G+Y+L++NIY++  RW E  ++R  + ++ +KK PGCS +E+    +EF  GDK HP+
Sbjct: 500 NPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPR 559

Query: 587 TLEIYKLLDEI 597
             EIY +L+E+
Sbjct: 560 NREIYGMLEEM 570



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 112/260 (43%), Gaps = 33/260 (12%)

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +P A  VF+ +   N++ WN+M  G         AL ++  M  LGL P+ +T   +L S
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA +   + G  +H ++ K     D ++  +L+ MY +  R++ A  VF     RDV SY
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132

Query: 395 TAMIVGLAIHGK-----------------AW--------------KALDIFSEMSQVGIE 423
           TA++ G A  G                  +W              +AL++F EM +  + 
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           PDE T V V+SA + +G +E G +        +      +    ++D + + G +  A  
Sbjct: 193 PDESTMVTVISASARSGSIELG-RQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACG 251

Query: 484 LIKSMPLVPDAFVWGALLGA 503
           L   +    D   W  L+G 
Sbjct: 252 LFLGLS-YKDVISWNILIGG 270


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/549 (37%), Positives = 336/549 (61%), Gaps = 36/549 (6%)

Query: 77  SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           ++  P   ++N + +  + +++P+ A+ LY  M+  GLLPN +T P++LK+C +S++ + 
Sbjct: 34  TIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKE 93

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH--------------- 180
           GQQ+H + +K     ++YV  +L+ +YA  G ++   K+F    H               
Sbjct: 94  GQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYAS 153

Query: 181 ----PQAQR--------DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV 228
                 AQ+        D+VSW  +I  Y +     +A+  F +M + N++PD   +  V
Sbjct: 154 RGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATV 213

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           +SAC++ G + LG ++H +I D+ F    ++ I NALID+Y KCG + +A ++ + +  K
Sbjct: 214 VSACAQSGSIELGRQVHSWINDHGF--GSNLKIVNALIDLYSKCGEVETACELLEGLSNK 271

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           +V+SWN++I G TH   +KEAL +F+ M   G  P+D T++ +L +CA++G +++G+W+H
Sbjct: 272 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIH 331

Query: 349 TYLDKNH----INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-RDVYSYTAMIVGLAI 403
            Y+DK      +     +  +L+DMYAKCG ID A  V  S    R + ++ AMI G A+
Sbjct: 332 VYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAM 391

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           HG+A  A DIFS M + GIEPD++TFVG+LSACSH+G+++ G   F  M + YN+ P+ E
Sbjct: 392 HGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLE 451

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           HYGCM+DL G +GL +EA ++I +MP+ PD  +W +LL ACKIH  +EL E   + L++ 
Sbjct: 452 HYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKI 511

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV-KKTPGCSLVEVYGEFYEFRKGDK 582
           EPE  G+Y+L++NIY++  +W E  K+R  + ++ + KK PGCS +E+    +EF  GDK
Sbjct: 512 EPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDK 571

Query: 583 SHPKTLEIY 591
            HP+  EIY
Sbjct: 572 LHPQNREIY 580



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 33/260 (12%)

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +P A  VF+ +P  N + WN M  G         AL ++  M  LGL P+ FT   +L S
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA     + G+ +H ++ K   + D ++  +L+ MYA+ GR++ A  VF     RDV SY
Sbjct: 85  CAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSY 144

Query: 395 TAMIVGLAIHGK-----------------AW--------------KALDIFSEMSQVGIE 423
           TA+I G A  G                  +W              KAL++F EM +  ++
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           PDE T   V+SAC+ +G +E G +        +      +    ++DL+ + G +  A +
Sbjct: 205 PDESTMATVVSACAQSGSIELG-RQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACE 263

Query: 484 LIKSMPLVPDAFVWGALLGA 503
           L++ +    D   W  L+G 
Sbjct: 264 LLEGLS-NKDVISWNTLIGG 282


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/587 (38%), Positives = 338/587 (57%), Gaps = 59/587 (10%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQHQ----------TQILYDKIISLSRGNEIENLSLQNP 81
           + + S+  LKQ HA I++TG  Q              +  ++ +S      + +  ++ P
Sbjct: 42  QCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDF-VRKP 100

Query: 82  QVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V+L+N +I+ C+ N  P +AI LY EM++    PN YT P VLKAC  +  +  G QVH
Sbjct: 101 NVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVH 160

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           A+ +K  L  + ++ ++ +R+YA  G +    ++         + D V W  +I  Y++ 
Sbjct: 161 AHLVKHGLGGDGHILSSAIRMYASFGRLVEARRIL---DDKGGEVDAVCWNAMIDGYLRF 217

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               EA    F+                      + D S+                  + 
Sbjct: 218 G-EVEAARELFE---------------------GMPDRSM------------------IS 237

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
             NA+I  + +CG +  AR+ FDEM  ++ +SW++MI G    G F EAL+IF +MQ   
Sbjct: 238 TWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEK 297

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           ++P  F L  VL++CAN+G L+ G+W+HTY  +N I  DG +G +LVDMYAKCGRID A+
Sbjct: 298 IRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAW 357

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  M  ++V S+ AMI GLA+HG+A  A+D+FS+M    I P+E+TFVGVL+AC+H G
Sbjct: 358 EVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGG 414

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LV++G   F  M + Y ++PQ EHYGC+VDL GRAGL+ EA  ++ S+P  P   VWGAL
Sbjct: 415 LVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGAL 474

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           LGAC+ H  VEL E V + L+  EP+  G Y L++NIY+   RW+E  ++RK MKER +K
Sbjct: 475 LGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIK 534

Query: 561 KTPGCSLVEV-YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            TPG S++++  GE ++F  GD SHP+  +IY++LD++  + +  GY
Sbjct: 535 TTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGY 581


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/612 (38%), Positives = 351/612 (57%), Gaps = 25/612 (4%)

Query: 3   SPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYD 62
           S L   +   ++   T + LSL+ Q       KS   LKQ HA ++    P+     L  
Sbjct: 18  SNLNFQTQKEHHQTLTEKLLSLIKQC------KSKNLLKQIHAQMLINSIPK--PNFLLS 69

Query: 63  KIISL---SRGNEIENLSLQNPQVYLYNFIIQCLSNANPLE--AIALYREMLIKGLLPNT 117
           KII L   +  + + N  L  P +Y +N +++ L+         + LY ++   GL  N 
Sbjct: 70  KIIDLKDLAYASLVFN-QLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANN 128

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
           +T P++  AC   + L  G+  H    K  L  + YV ++L+ +YA CG +    K+F  
Sbjct: 129 FTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFD- 187

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
                  RDLVSW ++I  Y KM +  EAI  F +M +    PD M LV VL AC  LGD
Sbjct: 188 ---EMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGD 244

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L LG  +  ++ +    ++   ++ +ALIDMY KCG++ SAR+VFD MP K+VV+WN++I
Sbjct: 245 LGLGRWVEGFVLEKKMEVNS--YMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAII 302

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
            G    G   EA+ +F  M+  G  PD  T++ VL++C+ IG L+LGKWV T+  +  + 
Sbjct: 303 TGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQ 362

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            D ++ +AL+DMYAKCG +D A  VF SM  ++  S+ AMI  LA HG+A +AL +F  M
Sbjct: 363 HDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRM 422

Query: 418 SQVG--IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           S+    ++P+++TF+GVLSAC HAGLV+EG + F  M+  + L P+ EHY CMVDL  RA
Sbjct: 423 SKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARA 482

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
           GL+ EA DLIK MP  PD  V G+LLGAC+     ++ E V++  +  E    G Y++ +
Sbjct: 483 GLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISS 542

Query: 536 NIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
            IY++  RW ++ K+R  M++  V KTPGCS +++    +EF  GD  H  ++ IY+LL+
Sbjct: 543 KIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHEFHAGDSLHNHSMNIYQLLN 602

Query: 596 EIMHQSKNHGYI 607
           E M   K  GYI
Sbjct: 603 EEM---KREGYI 611


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/559 (39%), Positives = 324/559 (57%), Gaps = 55/559 (9%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQV 83
           E + S+ +L Q HA I+K+G   H T      I S+S  +  + +         + NP  
Sbjct: 15  EMATSISELHQAHAHILKSGLI-HSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNS 73

Query: 84  YLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           Y++N II+  +N+  P  A+ ++ +ML   +LP+ YT  + LK+C     +  G+Q+H +
Sbjct: 74  YMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGH 133

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +KT L  ++++ NTL+ LYA CG I+    L         +RD+VSW  L+ AY +   
Sbjct: 134 VLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLD----RMLERDVVSWNALLSAYAERGL 189

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
              A   F +M + N+                                            
Sbjct: 190 MELACHLFDEMTERNVES-----------------------------------------W 208

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           N +I  Y+  G +  AR+VF E PVKNVVSWN+MI G +H G+F E L +F  MQ  G+K
Sbjct: 209 NFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVK 268

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD+ TLV VL++CA++G L  G+WVH Y+DKN I+ DGF+  ALVDMY+KCG I++A  V
Sbjct: 269 PDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEV 328

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F S   +D+ ++ ++I GL+ HG    AL IFSEM   G +P+EVTFV VLSACS AGL+
Sbjct: 329 FNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLL 388

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           +EG + F  M  V+ +QP  EHYGCMVDL GR GL+ EA +L++ MP    + VW +LLG
Sbjct: 389 DEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLG 448

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           AC+ H  VELAE V + L+   P+   +++ ++N+Y+S  RWK+ +++R+KM+ + V+K 
Sbjct: 449 ACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKD 508

Query: 563 PGCSLVEVYGEFYEFRKGD 581
           PGCS++EV G  YEF  G+
Sbjct: 509 PGCSMIEVDGTVYEFLAGE 527


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/595 (38%), Positives = 347/595 (58%), Gaps = 20/595 (3%)

Query: 18  TFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS 77
           T + LSLL Q     S+KS   L+Q H  +I      H+   L  + I L   N    L 
Sbjct: 31  TDKLLSLLKQCT---STKS---LQQIHTQMIINAI--HKPNFLLHRFIDLKDFNNASLLF 82

Query: 78  LQ--NPQVYLYNFIIQCLSNA--NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133
            Q   P  Y +N +I+ L+         I  Y +M   G+ PN +T P+V  AC     L
Sbjct: 83  SQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVL 142

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
             GQ  H+  +K+ L ++ +V ++L+ +Y+ CG +    ++F       +++DLVSW ++
Sbjct: 143 NHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFD----EISEKDLVSWNSM 198

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I  Y +M Y  +A+  F +M  A   PD M LV +L AC  LGDL LG  I  ++ +N  
Sbjct: 199 ISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEM 258

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
           +L+   F+ +ALI MY KCG++ SAR+VFD M  K+VV+WN+MI G    G   EA+ +F
Sbjct: 259 DLNS--FVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILF 316

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             M+  G+ PD  TLV VL++CA+IG L+ GKW+ TY  +  +  D ++  AL+DMYAKC
Sbjct: 317 SGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKC 376

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG--IEPDEVTFVG 431
           G +D A  VF  M  ++  S+ AMI  LA HG+  ++L +F  MS+ G  + P++++F+G
Sbjct: 377 GSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIG 436

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           VLSAC HAGLV+EG + F  MS  + L P+ EH+ CMVDL  RAG + EA D I+ MP  
Sbjct: 437 VLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEK 496

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           PD  V GALLGAC+    V+++E VM  L+  EP   G YI+ + I+++  RW ++ ++R
Sbjct: 497 PDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMR 556

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             M++R V KTPGCS +E+  + +EF  GD  H  + ++ ++++ +  + K  GY
Sbjct: 557 VLMRQRGVTKTPGCSWIEIENQVHEFHAGDVLHFISQDMCQVINLLNEEMKVEGY 611


>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/511 (42%), Positives = 318/511 (62%), Gaps = 10/511 (1%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P  AI +YR  +  G +P+ YT P VLK+C +   +   +Q H+ S+KT L  ++YV NT
Sbjct: 90  PWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNT 149

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +Y++CG      K+F         RD+VSWT LI  YVK     EAI  F  M   N
Sbjct: 150 LVHVYSICGDNVGAGKVFE----DMLVRDVVSWTGLISGYVKTGLFNEAISLFLRM---N 202

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           + P+    V +L AC KLG L+LG  IH  +    +    ++ + NA++DMY+KC ++  
Sbjct: 203 VEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLY--GEELVVCNAVLDMYMKCDSVTD 260

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           ARK+FDEMP K+++SW SMI GL      +E+LD+F +MQ  G +PD   L  VL++CA+
Sbjct: 261 ARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACAS 320

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +G L+ G+WVH Y+D + I  D  IG  LVDMYAKCG ID A  +F  M  +++ ++ A 
Sbjct: 321 LGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAY 380

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM-SRVY 456
           I GLAI+G   +AL  F ++ + G  P+EVTF+ V +AC H GLV+EG K+F +M S +Y
Sbjct: 381 IGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNEMTSPLY 440

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
           NL P  EHYGCMVDL  RAGL+ EA++LIK+MP+ PD  + GALL +   +  V   + +
Sbjct: 441 NLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLSSRNTYGNVGFTQEM 500

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
           +++L   E +  G Y+L++N+Y++  +W E   +R+ MK++ + K PG S++ V G  +E
Sbjct: 501 LKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQKGISKAPGSSIIRVDGMSHE 560

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           F  GD SHP++ EIY LL+ + +Q    G+I
Sbjct: 561 FLVGDNSHPQSEEIYVLLNILANQIYLEGHI 591



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 189/397 (47%), Gaps = 15/397 (3%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
           +   LR  +Q+HA+ + +AL++N  V             I  VH   +F +         
Sbjct: 18  KCNDLRSFKQIHAHLLTSALVTNDLVVTKAANFLG--KHITDVHYPCNFLKQFDWSLSSF 75

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
               LI  Y     P  AIL +    +    PD      VL +C+K   +    + H   
Sbjct: 76  PCNLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVS 135

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
                 L  D+++ N L+ +Y  CG+   A KVF++M V++VVSW  +I+G    G F E
Sbjct: 136 VKT--GLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLFNE 193

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A+ +F RM    ++P+  T V +L +C  +G L LGK +H  + K     +  + NA++D
Sbjct: 194 AISLFLRMN---VEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCNAVLD 250

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           MY KC  +  A  +F  M  +D+ S+T+MI GL       ++LD+FS+M   G EPD V 
Sbjct: 251 MYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVI 310

Query: 429 FVGVLSACSHAGLVEEG--CKHFLDMSRV-YNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
              VLSAC+  GL++ G     ++D  R+ +++   T     +VD++ + G I  A  + 
Sbjct: 311 LTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTT----LVDMYAKCGCIDMAQRIF 366

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
             MP   +   W A +G   I+   + A    E+LV 
Sbjct: 367 NGMP-SKNIRTWNAYIGGLAINGYGKEALKQFEDLVE 402



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 7/199 (3%)

Query: 89  IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           ++QC S   P E++ L+ +M   G  P+   L  VL AC     L  G+ VH Y     +
Sbjct: 283 LVQCQS---PRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRI 339

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             +V++  TL+ +YA CG I    ++F    +    +++ +W   I       Y  EA+ 
Sbjct: 340 KWDVHIGTTLVDMYAKCGCIDMAQRIF----NGMPSKNIRTWNAYIGGLAINGYGKEALK 395

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F D+ ++  RP+ +  + V +AC   G +  G K    +T   +NLSP +  +  ++D+
Sbjct: 396 QFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNEMTSPLYNLSPCLEHYGCMVDL 455

Query: 269 YLKCGNIPSARKVFDEMPV 287
             + G +  A ++   MP+
Sbjct: 456 LCRAGLVGEAVELIKTMPM 474


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/590 (38%), Positives = 338/590 (57%), Gaps = 65/590 (11%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQHQ----------TQILYDKIISLSRGNEIENLSLQNP 81
           + + S+  LKQ HA I++TG  Q              +  ++ +S      + +  ++ P
Sbjct: 43  QCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDF-VRKP 101

Query: 82  QVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V+L+N +I+ C+ N  P +AI LY EM++    PN YT P VLKAC  S  +  G QVH
Sbjct: 102 NVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVH 161

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           A+ +K  L  + ++ ++ +R+YA  G +    ++         + D V W  +I  Y++ 
Sbjct: 162 AHLVKHGLGGDGHILSSAIRMYASFGRLVEARRIL---DDKGGEVDAVCWNAMIDGYLRF 218

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD-- 258
               EA    F+         GM                                 PD  
Sbjct: 219 G-EVEAARELFE---------GM---------------------------------PDRS 235

Query: 259 -VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
            +   NA+I  + +CG +  AR+ FDEM  ++ +SW++MI G    G F EAL+IF +MQ
Sbjct: 236 MISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQ 295

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              ++P  F L  VL++CAN+G L+ G+W+HTY  +N I  DG +G +LVDMYAKCGRID
Sbjct: 296 KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRID 355

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A+ VF  M  ++V S+ AMI GLA+HG+A  A+D+FS+M    I P+E+TFVGVL+AC+
Sbjct: 356 LAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACA 412

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           H GLV++G   F  M + Y ++PQ EHYGC+VDL GRAGL+ EA  ++ S+P  P   VW
Sbjct: 413 HGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVW 472

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GALLGAC+ H  VEL E V + L+  EP+  G Y L++NIY+   RW+E  ++RK MKER
Sbjct: 473 GALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKER 532

Query: 558 KVKKTPGCSLVEV-YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            +K TPG S++++  GE ++F  GD SHP+  +IY++LD++  + +  GY
Sbjct: 533 GIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGY 582


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/528 (38%), Positives = 332/528 (62%), Gaps = 9/528 (1%)

Query: 83  VYLYNFIIQCLSNAN-PLEAIALYREMLIKGL-LPNTYTLPYVLKACWQSQSLRVGQQVH 140
           V  +N +++   N+N P  A+  Y EML +   +P+ +T P +LK C      +VG+ +H
Sbjct: 43  VLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLH 102

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              +K  L S++Y+  TL+ +YA CG +K+   LF    H    R+ V WT++I  Y+K 
Sbjct: 103 GQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGH----RNKVVWTSMISGYMKN 158

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
             P EA+L +  M +    PD + +  ++SAC++L DL +G+K+H +I +   ++     
Sbjct: 159 HCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIRE--MDMKICAV 216

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG-L 319
           + +AL++MY KCG++ +AR+VFD++  K+V +W+++I G     +  EAL +FR + G  
Sbjct: 217 LGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGS 276

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            ++P++ T++ V+++CA +G LE G+WVH Y+ +        + N+L+DM++KCG ID A
Sbjct: 277 NMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAA 336

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             +F SM  +D+ S+ +M+ G A+HG   +AL  F  M    ++PDE+TF+GVL+ACSHA
Sbjct: 337 KRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHA 396

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLV+EG K F ++  +Y ++ ++EHYGCMVDL  RAGL+ EA + I+ MPL PD  +WG+
Sbjct: 397 GLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGS 456

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           +LGAC+++  +EL E     L++ EP  DG YIL++NIY+ +  W E  K+R+ M E+ +
Sbjct: 457 MLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGI 516

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +KTPGCS V +    + F  GD SHP+  EI  +L ++  + K  GY+
Sbjct: 517 QKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYV 564



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR-PDGMILVIVLSACSKLGDLSLGIKI 244
           D+++W ++++A+V  + P  A+ S+ +M + +   PD      +L  C+ L +  +G  +
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 245 HRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
           H  +    + L  D++I   L++MY  CG++ SAR +F+ M  +N V W SMI+G     
Sbjct: 102 HGQVVK--YMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNH 159

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
              EAL ++++M+  G  PD+ T+  ++++CA +  L +G  +H+++ +  +     +G+
Sbjct: 160 CPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGS 219

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS-QVGIE 423
           ALV+MYAKCG +  A  VF  +  +DVY+++A+I G   + ++ +AL +F E++    + 
Sbjct: 220 ALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMR 279

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY----GCMVDLFGRAGLIR 479
           P+EVT + V+SAC+  G +E G +   D    Y  + Q  H       ++D+F + G I 
Sbjct: 280 PNEVTILAVISACAQLGDLETG-RWVHD----YITRTQKGHSVSLNNSLIDMFSKCGDID 334

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIH--AKVELAEIVMENLVRFEPE 526
            A  +  SM    D   W +++    +H   +  LA+  +      +P+
Sbjct: 335 AAKRIFDSMS-YKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPD 382



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 16/253 (6%)

Query: 260 FIH-----NALIDMYLKCGN--IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           FIH     N LI   L  G+  +  A  VF      +V++WNSM+    +    + AL  
Sbjct: 6   FIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQS 65

Query: 313 FRRMQGLGLK-PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           +  M       PD FT   +L  CA +   ++GK +H  + K  +++D +I   L++MYA
Sbjct: 66  YTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYA 125

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
            CG +  A  +F  M  R+   +T+MI G   +    +AL ++ +M + G  PDEVT   
Sbjct: 126 ACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMAT 185

Query: 432 VLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
           ++SAC+    +  G K   H  +M    +++        +V+++ + G ++ A  +   +
Sbjct: 186 LVSACAELKDLGVGMKLHSHIREM----DMKICAVLGSALVNMYAKCGDLKTARQVFDKL 241

Query: 489 PLVPDAFVWGALL 501
               D + W AL+
Sbjct: 242 S-DKDVYAWSALI 253


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/528 (38%), Positives = 332/528 (62%), Gaps = 9/528 (1%)

Query: 83  VYLYNFIIQCLSNAN-PLEAIALYREMLIKGL-LPNTYTLPYVLKACWQSQSLRVGQQVH 140
           V  +N +++   N+N P  A+  Y EML +   +P+ +T P +LK C      +VG+ +H
Sbjct: 43  VLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLH 102

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              +K  L S++Y+  TL+ +YA CG +K+   LF    H    R+ V WT++I  Y+K 
Sbjct: 103 GQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGH----RNKVVWTSMISGYMKN 158

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
             P EA+L +  M +    PD + +  ++SAC++L DL +G+K+H +I +   ++     
Sbjct: 159 HCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIRE--MDMKICAV 216

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG-L 319
           + +AL++MY KCG++ +AR+VFD++  K+V +W+++I G     +  EAL +FR + G  
Sbjct: 217 LGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGS 276

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            ++P++ T++ V+++CA +G LE G+WVH Y+ +        + N+L+DM++KCG ID A
Sbjct: 277 NMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAA 336

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             +F SM  +D+ S+ +M+ GLA+HG   +AL  F  M    ++PDE+TF+GVL+ACSHA
Sbjct: 337 KRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHA 396

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLV+EG K F ++  +Y ++ ++EHYGCMVDL  RAGL+ EA + I+ MPL PD  +WG+
Sbjct: 397 GLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGS 456

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           +LGAC+++  +EL E     L+  EP  DG YIL++NIY+ +  W E  K+R+ M E+ +
Sbjct: 457 MLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGI 516

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +KTPGCS V +    + F  GD SHP+  EI  +L ++  + K  GY+
Sbjct: 517 QKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYV 564



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR-PDGMILVIVLSACSKLGDLSLGIKI 244
           D+++W ++++A+V  + P  A+ S+ +M + +   PD      +L  C+ L +  +G  +
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 245 HRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
           H  +    + L  D++I   L++MY  CG++ SAR +F+ M  +N V W SMI+G     
Sbjct: 102 HGQVVK--YMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNH 159

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
              EAL ++++M+  G  PD+ T+  ++++CA +  L +G  +H+++ +  +     +G+
Sbjct: 160 CPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGS 219

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS-QVGIE 423
           ALV+MYAKCG +  A  VF  +  +DVY+++A+I G   + ++ +AL +F E++    + 
Sbjct: 220 ALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMR 279

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY----GCMVDLFGRAGLIR 479
           P+EVT + V+SAC+  G +E G +   D    Y  + Q  H       ++D+F + G I 
Sbjct: 280 PNEVTILAVISACAQLGDLETG-RWVHD----YITRTQKGHSVSLNNSLIDMFSKCGDID 334

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIH--AKVELAEIVMENLVRFEPE 526
            A  +  SM    D   W +++    +H   +  LA+  +      +P+
Sbjct: 335 AAKRIFDSMS-YKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPD 382



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 16/253 (6%)

Query: 260 FIH-----NALIDMYLKCGN--IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           FIH     N LI   L  G+  +  A  VF    V +V++WNSM+    +    + AL  
Sbjct: 6   FIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQS 65

Query: 313 FRRMQGLGLK-PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           +  M       PD FT   +L  CA +   ++GK +H  + K  +++D +I   L++MYA
Sbjct: 66  YTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYA 125

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
            CG +  A  +F  M  R+   +T+MI G   +    +AL ++ +M + G  PDEVT   
Sbjct: 126 ACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMAT 185

Query: 432 VLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
           ++SAC+    +  G K   H  +M    +++        +V+++ + G ++ A  +   +
Sbjct: 186 LVSACAELKDLGVGMKLHSHIREM----DMKICAVLGSALVNMYAKCGDLKTARQVFDQL 241

Query: 489 PLVPDAFVWGALL 501
               D + W AL+
Sbjct: 242 S-DKDVYAWSALI 253


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/650 (34%), Positives = 380/650 (58%), Gaps = 55/650 (8%)

Query: 2   ASPLTVASGSRYNDINTFQQLSLLHQSPR----LESSKSVGQLKQFHAFIIKTGS---PQ 54
           A PL++    R+ + +   Q +  ++  R    +E   S+ QLKQ H  +I+TG+   P 
Sbjct: 7   AQPLSLP---RHPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPY 63

Query: 55  HQTQIL----YDKIISLSRGNEIENLSLQNPQVYLYNFIIQC-LSNANPLEAIALYREML 109
             +++          SL    ++ +  +  P  + +N +I+   S  +P+ +I  + +M+
Sbjct: 64  SASKLFAMAALSSFASLEYARKVFD-EIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMV 122

Query: 110 IKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI 168
            +    PN YT P+++KA  +  SL +GQ +H  ++K+A+ S+V+V N+L+  Y  CG +
Sbjct: 123 SESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDL 182

Query: 169 KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV 228
            +  K+F   +    ++D+VSW ++I  +V+   P +A+  F  M   +++   + +V V
Sbjct: 183 DSACKVFTTIK----EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGV 238

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD----- 283
           LSAC+K+ +L  G ++  YI +N  N+  ++ + NA++DMY KCG+I  A+++FD     
Sbjct: 239 LSACAKIRNLEFGRQVCSYIEENRVNV--NLTLANAMLDMYTKCGSIEDAKRLFDAMEEK 296

Query: 284 --------------------------EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
                                      MP K++V+WN++I+     G+  EAL +F  +Q
Sbjct: 297 DNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQ 356

Query: 318 -GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
               +K +  TLV  L++CA +G LELG+W+H+Y+ K+ I  +  + +AL+ MY+KCG +
Sbjct: 357 LQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDL 416

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           +++  VF S++ RDV+ ++AMI GLA+HG   +A+D+F +M +  ++P+ VTF  V  AC
Sbjct: 417 EKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCAC 476

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SH GLV+E    F  M   Y + P+ +HY C+VD+ GR+G + +A+  I++MP+ P   V
Sbjct: 477 SHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSV 536

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           WGALLGACKIHA + LAE+    L+  EP  DGA++L++NIY+   +W+   +LRK M+ 
Sbjct: 537 WGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRV 596

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             +KK PGCS +E+ G  +EF  GD +HP + ++Y  L E+M + K++GY
Sbjct: 597 TGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGY 646


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/528 (38%), Positives = 326/528 (61%), Gaps = 7/528 (1%)

Query: 80  NPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           N   +LYN +I+ + + +    A+ LY  M    ++P+++T  +VLKAC +     +G  
Sbjct: 66  NSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVM 125

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +H+   KT    +V+V   ++  Y+ CG ++   K+F         +++VSWT +I   +
Sbjct: 126 IHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFD----DMVVKNVVSWTGMICGCI 181

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +     EA+  F  + ++ LRPDG ++V VL AC++LGDL  G  I R + +    LS +
Sbjct: 182 EFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRE--CGLSRN 239

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           VF+  +L+DMY KCG++  AR VFD M  K++V W++MI G    G  +EA+++F  M+ 
Sbjct: 240 VFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRK 299

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
           + ++PD + +V  L+SCA++G LELG W    ++     ++  +G +L+D YAKCG +++
Sbjct: 300 VNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEE 359

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A GV++ MK +D   + A+I GLA++G+   A  +F +M + GI P+E TFVG+L  C+H
Sbjct: 360 ALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTH 419

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           AGLV++G  +F  MS  +++ P  EHYGCMVDL  RAG + EA +LIK MP+  +  VWG
Sbjct: 420 AGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWG 479

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           +LLG C++H + +LAE V++ L+  EP   G Y+L++NIYS+  RW EA K+R  + E+ 
Sbjct: 480 SLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKG 539

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           ++K PG S VEV G  +EF  GD SHP + +IY+ L+ +    K  GY
Sbjct: 540 MQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGY 587


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/536 (38%), Positives = 322/536 (60%), Gaps = 35/536 (6%)

Query: 104 LYREMLIKGLLPNTYTLPYVLKACWQS-QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLY 162
           +Y  ML +G  P+ YT P +LKA   + +   VG  VHA+ +K  +  N +V ++L+ +Y
Sbjct: 5   VYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVLMY 64

Query: 163 AVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
           A  G   AV +        +     V W  LI  + +      +  SF DM +  + P  
Sbjct: 65  AARG-DGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTP 123

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC---------- 272
           +  + VLSAC K   + LG+++H+ +  +   + PD+ + NALIDMY +C          
Sbjct: 124 VTYITVLSACGKDKYIWLGMQVHKCVVAS--GVLPDLKVGNALIDMYAECSEMDAAWELF 181

Query: 273 ---------------------GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
                                G +  AR +FD MP ++ VSW +MI G    GQF+EAL+
Sbjct: 182 EGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALE 241

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           +FR MQ   ++ D+FT+V V+ +CA +G LE G+W   Y+ ++ I  D F+GNALVDMY+
Sbjct: 242 MFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYS 301

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           KCG I QA GVF+ M  RD +++TA+I+GLA++G   +A+++F  M +V   PDEVTF+G
Sbjct: 302 KCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIG 361

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           VL+AC+HAGLV++G   FL M+  Y + P   H+GC++DL GRAG ++EAL+ I +MP+ 
Sbjct: 362 VLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMR 421

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P++ +WG LL AC++H   E+ ++  E+L+  + E    YIL++N+Y+  NRW++  +LR
Sbjct: 422 PNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLR 481

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + + E+ +KK PGCSL+E+ G  +EF  GD+SHP + EIY  LD+++   K+ GY+
Sbjct: 482 QVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKLDKVLTDLKDAGYV 537



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 6/200 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ ++REM    +  + +T+  V+ AC Q  +L  G+    Y  +  +  + +V N L+
Sbjct: 238 EALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALV 297

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ CG I+    +F         RD  +WT +I       +  EAI  F+ M +    
Sbjct: 298 DMYSKCGSIQQALGVF----KEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEA 353

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  + VL+AC+  G +  G      +T + + ++P+V     LID+  + G +  A 
Sbjct: 354 PDEVTFIGVLTACTHAGLVDKGRDFFLSMTGS-YGIAPNVMHFGCLIDLLGRAGKLKEAL 412

Query: 280 KVFDEMPVK-NVVSWNSMIA 298
           +    MP++ N   W +++A
Sbjct: 413 ETIGNMPMRPNSAIWGTLLA 432


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/651 (37%), Positives = 356/651 (54%), Gaps = 56/651 (8%)

Query: 4   PLTVAS-----GSRYNDIN--TFQQL-SLLHQSPR--LESSKSVGQLKQFHAFIIKTGSP 53
           P +V S     GS    IN   + QL S  HQ+    L+   S+ +LK  HA II  G  
Sbjct: 9   PASVGSRLFCVGSLQTQINKTIWHQLKSPTHQTLHHLLDQCSSMKRLKLVHAQIILHGLA 68

Query: 54  QHQTQILYDKIISLS------RGNEIENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYR 106
                +   K++SL       R   +    +  P  ++YN +I+  SN+N P++++ L+R
Sbjct: 69  AQVVTL--GKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFR 126

Query: 107 EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
           +M+  G +PN +T P+VLKAC           VHA ++K  +  +  V N ++  Y  C 
Sbjct: 127 QMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACR 186

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
           LI +  ++F       + R +VSW ++I  Y KM +  EAIL F +M Q  +  D   LV
Sbjct: 187 LILSARQVFD----DISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLV 242

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM- 285
            +LSA SK  +L LG  +H YI      +  D  + NALIDMY KCG++  A+ VFD+M 
Sbjct: 243 SLLSASSKHCNLDLGRFVHLYIVITGVEI--DSIVTNALIDMYAKCGHLQFAKHVFDQML 300

Query: 286 ------------------------------PVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
                                         PVKNVVSWNS+I  L   GQ+ EA+++F R
Sbjct: 301 DKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHR 360

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M   G+ PDD TLV +L+ C+N G L LGK  H Y+  N I     + N+L+DMYAKCG 
Sbjct: 361 MCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGA 420

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +  A  +F  M  ++V S+  +I  LA+HG   +A+++F  M   G+ PDE+TF G+LSA
Sbjct: 421 LQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSA 480

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           CSH+GLV+ G  +F  M   + + P  EHY CMVDL GR G + EA+ LI+ MP+ PD  
Sbjct: 481 CSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVV 540

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           VWGALLGAC+I+  +E+A+ +M+ L+       G Y+L++N+YS   RW +  K+RK M 
Sbjct: 541 VWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMD 600

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           +  +KK    S +E+ G  Y+F   DK H  +  IY +LD++M   K+ GY
Sbjct: 601 DSGIKKCRAISFIEIDGCCYQFMVDDKRHCASTGIYSILDQLMDHLKSVGY 651


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/531 (40%), Positives = 317/531 (59%), Gaps = 7/531 (1%)

Query: 78  LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           L N  +  +N +I  L+   N  EA  +Y +M  +G++PN  T   +L AC    +L  G
Sbjct: 406 LVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWG 465

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +++H+  +K   + ++ V N L+ +YA CG IK    LF+       ++D++SWT +I  
Sbjct: 466 REIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFN----KMVRKDIISWTAMIGG 521

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
             K     EA+  F DM QA L+P+ +    +L+ACS    L  G +IH+ + +    L+
Sbjct: 522 LAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIE--AGLA 579

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D  + N L++MY  CG++  AR+VFD M  +++V++N+MI G       KEAL +F R+
Sbjct: 580 TDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRL 639

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           Q  GLKPD  T + +LN+CAN G LE  K +H+ + K+   +D  +GNALV  YAKCG  
Sbjct: 640 QEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSF 699

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
             A  VF  M  R+V S+ A+I G A HG+    L +F  M   GI+PD VTFV +LSAC
Sbjct: 700 SDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSAC 759

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SHAGL+EEG ++F  MSR + + P  EHYGCMVDL GRAG + E   LIK+MP   +  +
Sbjct: 760 SHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRI 819

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           WGALLGAC+IH  V +AE   E+ ++ +P+    Y+ ++++Y++   W  A KLRK M++
Sbjct: 820 WGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQ 879

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R V K PG S +EV  + + F   D+SHP++ +IY  LD++ H  K  GY+
Sbjct: 880 RGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYV 930



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 147/494 (29%), Positives = 244/494 (49%), Gaps = 40/494 (8%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L REM   GL     T   +L +C    +L  G+++H  +MK  LL +V V N ++
Sbjct: 227 EALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCIL 286

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I    ++F         + +VSWT +I  Y    +   A   F  M Q  + 
Sbjct: 287 NMYAKCGSIHEAREVFD----KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVV 342

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  + VL+A S    L  G  +H +I +       D+ +  AL+ MY KCG+    R
Sbjct: 343 PNRITYINVLNAFSGPAALKWGKTVHSHILNAGH--ESDLAVGTALVKMYAKCGSYKDCR 400

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +VF+++  +++++WN+MI GL   G ++EA +I+ +MQ  G+ P+  T V +LN+C N  
Sbjct: 401 QVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPT 460

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L  G+ +H+ + K+    D  + NAL+ MYA+CG I  A  +F  M  +D+ S+TAMI 
Sbjct: 461 ALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIG 520

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGLVEEG--- 445
           GLA  G   +AL +F +M Q G++P+ VT+  +L+ACS           H  ++E G   
Sbjct: 521 GLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLAT 580

Query: 446 --------------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREAL---DLIK 486
                         C    D  +V++   Q +   Y  M+  +    L +EAL   D ++
Sbjct: 581 DAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ 640

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY-ILMTNIYSSKNRWK 545
              L PD   +  +L AC     +E A+ +   +++     D +    + + Y+    + 
Sbjct: 641 EEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFS 700

Query: 546 EALKLRKKMKERKV 559
           +AL +  KM +R V
Sbjct: 701 DALLVFDKMMKRNV 714



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 239/484 (49%), Gaps = 40/484 (8%)

Query: 111 KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170
           +G   N+     +LK C + + L  G++VH + ++   + + Y  N L+ +Y  CG I+ 
Sbjct: 135 QGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEE 194

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
             ++++   H   +R + SW  ++  YV+  Y  EA+    +M Q  L       + +LS
Sbjct: 195 ARQVWNKLNH--TERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLS 252

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           +C     L  G +IH  +      L  DV + N +++MY KCG+I  AR+VFD+M  K+V
Sbjct: 253 SCKSPSALECGREIH--VEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSV 310

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           VSW  +I G    G  + A +IF++MQ  G+ P+  T + VLN+ +    L+ GK VH++
Sbjct: 311 VSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSH 370

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           +      +D  +G ALV MYAKCG       VF  +  RD+ ++  MI GLA  G   +A
Sbjct: 371 ILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEA 430

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGLVEEG-------------- 445
            +I+ +M + G+ P+++T+V +L+AC            H+ +V++G              
Sbjct: 431 SEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISM 490

Query: 446 ---CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMP---LVPDAFVW 497
              C    D   ++N   + +   +  M+    ++GL  EAL + + M    L P+   +
Sbjct: 491 YARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTY 550

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT--NIYSSKNRWKEALKLRKKMK 555
            ++L AC   A ++    + + ++      D A++  T  N+YS     K+A ++  +M 
Sbjct: 551 TSILNACSSPAALDWGRRIHQQVIEAGLATD-AHVANTLVNMYSMCGSVKDARQVFDRMT 609

Query: 556 ERKV 559
           +R +
Sbjct: 610 QRDI 613



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A+D+ + +Q  G + +    + +L  C  +  L  G+ VH ++ ++    D +  NAL++
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 369 MYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           MY +CG I++A  V+  +    R V+S+ AM+VG   +G   +AL +  EM Q G+    
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
            T + +LS+C     +E G +  ++  +   L        C+++++ + G I EA ++  
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKA-RLLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
            M        W  ++G    +A    +EI  E   + + EG
Sbjct: 304 KME-TKSVVSWTIIIGG---YADCGHSEIAFEIFQKMQQEG 340


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/525 (39%), Positives = 323/525 (61%), Gaps = 40/525 (7%)

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           ++ P  +L+N +I+ L+ ++ P +AIA Y++    G++P+  T P++LKAC +  +L  G
Sbjct: 47  IEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEG 106

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+H +  K  LLS+++V N+L+ LYA CG +     +F         +D+VSW +LI  
Sbjct: 107 EQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFD----EMVVKDVVSWNSLICG 162

Query: 197 YVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           Y + +   + IL+ F + Q   ++ D + ++ V+SAC++LGD S+   + RYI D  + +
Sbjct: 163 YSQCNRFKD-ILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIED--YCI 219

Query: 256 SPDVFIHNALID-------------------------------MYLKCGNIPSARKVFDE 284
             DV++ N L+D                                Y K  +I SARK+FD+
Sbjct: 220 EVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQ 279

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           +P K+++SW+SMI+G +    F +AL+IFR+MQ   +KPD   +  V++SCA++G L+LG
Sbjct: 280 IPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG 339

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           KWVH Y+ +N+I  D  + N+L+DMY KCG   +A  VF+ MK +D  S+ ++I+GLA +
Sbjct: 340 KWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANN 399

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G   ++L++F  M   G  P+ VTF+GVL AC++A LVEEG  HF  M R+Y+L+PQ +H
Sbjct: 400 GFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKH 459

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           YGC+VDL GRAG + +AL  I  MP+ PD  VW  LLG+C  H  V +AEIV + L   E
Sbjct: 460 YGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELE 519

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           P   G Y L++N Y+S +RW EA+ +R+ M +  V+K+PGCS VE
Sbjct: 520 PSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 564



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 207/399 (51%), Gaps = 44/399 (11%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVC--GLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
           +++HAY + + L +  Y  + ++R YA+    L+ A HK+F   + P        W  LI
Sbjct: 5   KRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFA-HKVFDQIEAPTT----FLWNILI 59

Query: 195 QAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           +   + D P +AI +F+   Q   + PD +    +L AC+++  L+ G ++H +IT    
Sbjct: 60  RGLAQSDAPADAI-AFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHIT--KL 116

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            L  D+F+ N+LI +Y  CGN+  AR VFDEM VK+VVSWNS+I G +   +FK+ L +F
Sbjct: 117 GLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALF 176

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
           + MQ  G+K D  T++ V+++C  +G   +  ++  Y++   I  D ++GN LVD + + 
Sbjct: 177 KLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRR 236

Query: 374 GRIDQAFGVFRSMKCR-------------------------------DVYSYTAMIVGLA 402
           G++  A  VF +MK R                               D+ S+++MI G +
Sbjct: 237 GQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYS 296

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
                  AL+IF +M +  ++PD +    V+S+C+H G ++ G K   +  R  N++  T
Sbjct: 297 QANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG-KWVHEYVRRNNIKADT 355

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
                ++D++ + G  +EAL + K M    D   W +++
Sbjct: 356 IMENSLIDMYMKCGSAKEALQVFKEMK-EKDTLSWNSII 393



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 145/287 (50%), Gaps = 13/287 (4%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A KVFD++       WN +I GL       +A+  +++ QG G+ PD+ T   +L +CA 
Sbjct: 40  AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 99

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           I  L  G+ +H ++ K  + +D F+ N+L+ +YA CG +  A  VF  M  +DV S+ ++
Sbjct: 100 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 159

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG---LVEEGCKHFLDMSR 454
           I G +   +    L +F  M   G++ D+VT + V+SAC+  G   + +   ++  D   
Sbjct: 160 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIED--- 216

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y ++        +VD FGR G ++ A  +  +M  V +     A++ A      +  A 
Sbjct: 217 -YCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMK-VRNIVTMNAMIAAYAKGQDIVSAR 274

Query: 515 IVMENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
            + + +    P+ D  ++  M + YS  N + +AL++ ++M+  KVK
Sbjct: 275 KIFDQI----PKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVK 317


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/608 (38%), Positives = 350/608 (57%), Gaps = 21/608 (3%)

Query: 7   VASGSR-YNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG-SPQHQTQ----IL 60
           +  G+R Y+D+  F+   LL +  RL   +S+ Q ++ HA I+K+G  P    +     +
Sbjct: 88  ILQGTRVYSDV--FR--GLLQECARL---RSLEQGREVHAAILKSGIQPNRYLENTLLSM 140

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTYT 119
           Y K  SL+    + +  +++  +  +  +I+     N  LEA   Y  M + G  P+  T
Sbjct: 141 YAKCGSLTDARRVFD-GIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVT 199

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
              +L A    + L+VGQ+VH    K  L     V  +L+ +YA CG I     +F    
Sbjct: 200 FVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFD--- 256

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
               ++++V+WT LI  Y +      A+     M QA + P+ +    +L  C+    L 
Sbjct: 257 -KLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALE 315

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G K+HRYI  + +    ++++ NALI MY KCG +  ARK+F ++P ++VV+W +M+ G
Sbjct: 316 HGKKVHRYIIQSGYGR--EIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTG 373

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G   EA+D+FRRMQ  G+KPD  T    L SC++  +L+ GK +H  L     + D
Sbjct: 374 YAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLD 433

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            ++ +ALV MYAKCG +D A  VF  M  R+V ++TAMI G A HG+  +AL+ F +M +
Sbjct: 434 VYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKK 493

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            GI+PD+VTF  VLSAC+H GLVEEG KHF  M   Y ++P  EHY C VDL GRAG + 
Sbjct: 494 QGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLE 553

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA ++I +MP  P   VWGALL AC+IH+ VE  E   EN+++ +P+ DGAY+ ++NIY+
Sbjct: 554 EAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYA 613

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
           +  R+++A K+R+ M++R V K PG S +EV G+ + F   DKSHP+  EIY  L ++  
Sbjct: 614 AAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTE 673

Query: 600 QSKNHGYI 607
           Q K  GY+
Sbjct: 674 QIKEQGYV 681



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/423 (30%), Positives = 220/423 (52%), Gaps = 26/423 (6%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ +   M+++G    +     +L+ C + +SL  G++VHA  +K+ +  N Y+ NTL+
Sbjct: 79  EALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 138

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG +    ++F   +     R++VSWT +I+A+V  +   EA   +  M  A  +
Sbjct: 139 SMYAKCGSLTDARRVFDGIR----DRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCK 194

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  V +L+A +    L +G K+H  I      L P V    +L+ MY KCG+I  A+
Sbjct: 195 PDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRV--GTSLVGMYAKCGDISKAQ 252

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +FD++P KNVV+W  +IAG   +GQ   AL++  +MQ   + P+  T   +L  C    
Sbjct: 253 VIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPL 312

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            LE GK VH Y+ ++    + ++ NAL+ MY KCG + +A  +F  +  RDV ++TAM+ 
Sbjct: 313 ALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVT 372

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G A  G   +A+D+F  M Q GI+PD++TF   L++CS    ++EG           ++ 
Sbjct: 373 GYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEG----------KSIH 422

Query: 460 PQTEHYG---------CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            Q  H G          +V ++ + G + +A  +   M    +   W A++  C  H + 
Sbjct: 423 QQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMS-ERNVVAWTAMITGCAQHGRC 481

Query: 511 ELA 513
             A
Sbjct: 482 REA 484


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/589 (37%), Positives = 338/589 (57%), Gaps = 61/589 (10%)

Query: 30  RLESSKSVGQLK---QFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SL 78
           +L  SKS+  L+   Q HA ++++G    Q   +   ++         N         S+
Sbjct: 36  KLFDSKSITSLQYLTQLHALVLRSG--HFQDHYVSGALLKCYANPHFSNFDFALKVFSSI 93

Query: 79  QNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
            NP V+++N +I+ CL N    +AI  Y  M+I    PN +T P + KAC  +Q+++ G+
Sbjct: 94  PNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDAR-PNKFTYPTLFKACSVAQAVQEGR 152

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           Q+H + +K  + S+V++ +  +++YA  G ++   K+F+       + D+V W T+I  Y
Sbjct: 153 QIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFY-----SGESDVVCWNTMIDGY 207

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           +K      A   F  M   N+                                       
Sbjct: 208 LKCGVLEAAKGLFAQMPVKNIGS------------------------------------- 230

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
                N +I+   K GN+  ARK+FDEM  ++ +SW+SM+ G    G++KEAL+IF++MQ
Sbjct: 231 ----WNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQ 286

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
               +P  F L  VL +C+NIG ++ G+WVH YL +N I  D  +G AL+DMYAKCGR+D
Sbjct: 287 REETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLD 346

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
             + VF  MK R+++++ AMI GLAIHG+A  AL++FS++ +  ++P+ +T VGVL+AC+
Sbjct: 347 MGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACA 406

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAG V++G + F  M   Y + P+ EHYGCMVDL GR+GL  EA DLI SMP+ P+A VW
Sbjct: 407 HAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVW 466

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GALLGAC+IH   +LAE V + L+  EP+  G Y+L++NIY+   R+ +  K+RK MK R
Sbjct: 467 GALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNR 526

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            +K  PG S+V++ G  +EF+ GD SHP+  EIY+ L  I  + +  G+
Sbjct: 527 GIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGH 575


>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 581

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/480 (41%), Positives = 304/480 (63%), Gaps = 5/480 (1%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           + Y+L   + A  +  SL VG Q HA S+K +L S+ +V N L+ +Y+ C    +   + 
Sbjct: 92  DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 151

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
                P+   D+VSW T+I  Y++   P +A+ SF  M +  +R D + L+ VL AC++ 
Sbjct: 152 D--SAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACART 209

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
           G + +G   H  +  N F +  + +I ++L+ MY KCG +  AR+VF+ MP +NVV W S
Sbjct: 210 GAMKVGSLCHALVVLNGFEI--NCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTS 267

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           MIAG T  G+FKEA+D+FR MQ  G+K DD T+  V++SC  +G L+LG+++H Y D + 
Sbjct: 268 MIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHG 327

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           +  +  + N+L+DMY+KCG +++A+ +F  +  RDV+++T MI+G A++G   +ALD+F+
Sbjct: 328 LGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFA 387

Query: 416 EM-SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           +M  +  + P+EV F+GVL+ACSH GLVE+G  HF  MS+VYNL P+ EHYGCMVDL GR
Sbjct: 388 QMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGR 447

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           A L+ EA   IK MP+ PD  VW +LL AC+   +V LAE   E + + EP+  G ++L+
Sbjct: 448 AKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLL 507

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           +N+Y++  RW +   +R  M   +  K PGCS +EV G  +EF  GD+SH +T  I   L
Sbjct: 508 SNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGDESHFETEAICNTL 567



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 140/248 (56%), Gaps = 7/248 (2%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P +A+  + +M  + +  +  TL  VL AC ++ +++VG   HA  +      N Y+ ++
Sbjct: 177 PNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSS 236

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +YA CG+++   ++F+  + P  +R++V WT++I    +     EA+  F DM  A 
Sbjct: 237 LVSMYAKCGMVEEARRVFN--RMP--ERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAG 292

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++ D   +  V+S+C ++G L LG  +H Y  D H  L  ++ + N+LIDMY KCG++  
Sbjct: 293 VKADDATIATVVSSCGQMGALDLGRYLHAY-CDGH-GLGKELSVKNSLIDMYSKCGDVNK 350

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCA 336
           A ++F  +  ++V +W  MI G    G   EALD+F +M+G   + P++   + VL +C+
Sbjct: 351 AYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACS 410

Query: 337 NIGWLELG 344
           + G +E G
Sbjct: 411 HGGLVEQG 418



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 7/262 (2%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K   +     + N   +   V   + I  C  +    EA+ L+R+M I G+  +  T
Sbjct: 240 MYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDAT 299

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           +  V+ +C Q  +L +G+ +HAY     L   + V N+L+ +Y+ CG +   +++F    
Sbjct: 300 IATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIF---- 355

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDL 238
           H   +RD+ +WT +I  +       EA+  F  M  +  + P+ +I + VL+ACS  G +
Sbjct: 356 HGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLV 415

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMI 297
             G   H +     +NL P +  +  ++D+  +   +  A +   +MPV  +VV W S++
Sbjct: 416 EQGYH-HFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLL 474

Query: 298 AGLTHRGQFKEALDIFRRMQGL 319
                 GQ   A     R++ L
Sbjct: 475 FACRASGQVGLAEYAAERIEQL 496


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/608 (38%), Positives = 341/608 (56%), Gaps = 48/608 (7%)

Query: 40  LKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQVYLYNFIIQ 91
           LK  HA II  G       +   K+IS    ++  +L         +  P  ++YN +I+
Sbjct: 4   LKLLHAQIILHGLTNETLTL--GKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIR 61

Query: 92  CLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
             SN++ P++A+ L+R M+  GL PN +TLP+VLKAC    +      VH  ++K  + S
Sbjct: 62  GYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGS 121

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
            V+V N L+ +Y VCGLI    KLF         + LVSW ++I  Y  M    EA L F
Sbjct: 122 LVFVQNALIAVYVVCGLIHCARKLFD----DITDKTLVSWNSMIGGYAHMGNWKEAFLLF 177

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             M +  + PDG   V +LS CS+  DL LG  +H  I      +  D+ + NAL+DMY 
Sbjct: 178 RKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKI--DIIVRNALVDMYA 235

Query: 271 KCGNIPSA-------------------------------RKVFDEMPVKNVVSWNSMIAG 299
           KCGN+ SA                               R++FD+MP KNVVSWNSMI+ 
Sbjct: 236 KCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISC 295

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               GQ++EALD+F +M+   + PD+ TLV +L +C+ +G L +GK +H Y+  N     
Sbjct: 296 YLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYG 355

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             + N+L+DMYAKCG +  A  +F  M  +++ S+  +I  LA+HG   +A+ +F EM  
Sbjct: 356 VTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQA 415

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G  PDE+T  G+LSACSH+GLV+ G  +F  M  +Y +  + EHY CMVDL GR GL+ 
Sbjct: 416 DGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLG 475

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA++LI  MP+ PD  VWGALLGAC+IH  VE+ + +++ L+  EP   G Y+L++NIY 
Sbjct: 476 EAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYW 535

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
              RW++  K+RK M +R +KK    S +E+ G  YEF   DK H  +  IY +LD++  
Sbjct: 536 EAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTD 595

Query: 600 QSKNHGYI 607
             ++ GY+
Sbjct: 596 HLRSAGYL 603


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/612 (37%), Positives = 344/612 (56%), Gaps = 52/612 (8%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIENL--------SLQNPQVYLY 86
           S+ QLK  HA II  G     TQ+L   K++S S   ++ +L         +  P  +++
Sbjct: 48  SLKQLKHVHAQIILHGLA---TQVLTLGKLVSSSV--QLRDLRYAHKLFDQIPQPNKFMF 102

Query: 87  NFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           N +I+  SN+ +P++++ LYR M+  G+LPN +T+P+VLKAC       +G  VHA S K
Sbjct: 103 NHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFK 162

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
             + S+  V N ++ +Y  CGLI +  ++F       ++R LVSW ++I  Y KM    E
Sbjct: 163 LGMGSHACVQNAILNIYVACGLITSARRVFD----DISERTLVSWNSMINGYSKMGRSEE 218

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           A+L F +M +  L PD   LV +LS  +K G+  LG  +H ++      +  D  + NAL
Sbjct: 219 AVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEI--DSIVTNAL 276

Query: 266 IDMYLKCGNIPSARKVFDEM-------------------------------PVKNVVSWN 294
           +DMY KCGN+  A+ VFD+M                               P KNVVSWN
Sbjct: 277 MDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWN 336

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           S+I      G + EA+D+F RM   G+  +D TLV +L+SC+++G L LGK  H+Y+  N
Sbjct: 337 SIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDN 396

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
           +I     + NA++DMYAKCG +  A  VF  M  ++  S+  +I  LA+HG   +A+++F
Sbjct: 397 NITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMF 456

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            +M   G+ PDE+TF G+LSACSH+GLV+ G  +F  M+  + + P  EHY CMVDL GR
Sbjct: 457 EKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGR 516

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
            GL+ EA+ LIK MP+ PD  VW ALLGAC+ +  + + + +M+ L+       G Y+L+
Sbjct: 517 RGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLL 576

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           +N+YS   RW +   + K + +  +KK    S +E+ G  Y+F   DK H  +  IY +L
Sbjct: 577 SNMYSESQRWDDMKNIWKILDQNGIKKCRAISFIEIDGCCYQFMVDDKRHGASTSIYSML 636

Query: 595 DEIMHQSKNHGY 606
            ++M   K+ GY
Sbjct: 637 GQLMDHLKSAGY 648


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/589 (37%), Positives = 337/589 (57%), Gaps = 61/589 (10%)

Query: 30  RLESSKSVGQLK---QFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SL 78
           +L  SKS+  L+   Q H  ++++G    Q   +   ++         N         S+
Sbjct: 36  KLFDSKSITSLQYLTQLHGLVLRSG--HFQDHYVSGALLKCYANPHFSNFDFALKVFSSI 93

Query: 79  QNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
            NP V+++N +I+ CL N    +AI  Y  M+I    PN +T P + KAC  +Q+++ G+
Sbjct: 94  PNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDAR-PNKFTYPTLFKACSVAQAVQEGR 152

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           Q+H + +K  + S+V++ +  + +YA  G ++   K+F+       + D+V W T+I  Y
Sbjct: 153 QIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFY-----SGESDVVCWNTMIDGY 207

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           +K      A   F  M   N+                                       
Sbjct: 208 LKCGVLEAAKGLFAQMPVKNIGS------------------------------------- 230

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
                N +I+   K GN+  ARK+FDEM  ++ +SW+SM+ G    G++KEAL+IF++MQ
Sbjct: 231 ----WNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQ 286

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
               +P  F L  VL +C+NIG ++ G+WVH YL +N I  D  +G AL+DMYAKCGR+D
Sbjct: 287 REETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLD 346

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
             + VF  MK R+++++ AMI GLAIHG+A  AL++FS++ +  ++P+ +T VGVL+AC+
Sbjct: 347 MGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACA 406

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAG V++G + F  M   Y + P+ EHYGCMVDL GR+GL  EA DLI SMP+ P+A VW
Sbjct: 407 HAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVW 466

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GALLGAC+IH   +LAE V + L+  EP+  G Y+L++NIY+   R+ +  K+RK MK+R
Sbjct: 467 GALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDR 526

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            +K  PG S+V++ G  +EF+ GD SHP+  EIY+ L  I  + +  G+
Sbjct: 527 GIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGH 575


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/590 (37%), Positives = 342/590 (57%), Gaps = 53/590 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQN--------PQ 82
           L+S KS+ QLKQ  A I   G  Q +  +  +K+++ S  + + + +  N        P 
Sbjct: 15  LKSCKSMSQLKQIQAHIFCVGLQQDRDTL--NKLMAFSMDSSLGDFNYANRIFNYIHDPS 72

Query: 83  VYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           +++YN +I+    +     AI+L++++   G+ P+ YT PYVLK       +R G++VHA
Sbjct: 73  LFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHA 132

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           + +KT L  + YV N+ M +YA  GL++   ++F         RD VSW  +I  YV+  
Sbjct: 133 FVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFE----EMPDRDAVSWNIMISGYVRCK 188

Query: 202 YPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
              EA+  +  M  ++N +P+   +V  LSAC+ L +L LG +IH YI      L     
Sbjct: 189 RFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASE---LDLTTI 245

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR----- 315
           + NAL+DMY KCG++  AR++FD M VKNV  W SM+ G    GQ  +A ++F R     
Sbjct: 246 MGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRD 305

Query: 316 --------------------------MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
                                     MQ  G+KPD F +V +L  CA  G LE GKW+H 
Sbjct: 306 IVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHN 365

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           Y+D+N I  D  +G AL++MYAKCG I+++F +F  +K +D  S+T++I GLA++GK  +
Sbjct: 366 YIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSE 425

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           AL++F  M   G++PD++TFV VLSACSHAGLVEEG K F  MS +Y+++P  EHYGC +
Sbjct: 426 ALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFI 485

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFV---WGALLGACKIHAKVELAEIVMENLVRFEPE 526
           DL GRAGL++EA +L+K +P   +  +   +GALL AC+ +  +++ E +   L + +  
Sbjct: 486 DLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSS 545

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
               + L+ +IY+S +RW++  K+R KMK+  +KK PG S +EV G++ +
Sbjct: 546 DSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEVDGKWQQ 595


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/638 (35%), Positives = 361/638 (56%), Gaps = 54/638 (8%)

Query: 10  GSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIIS 66
           G + N++ +   L  + Q        +  QLKQ HA +++T     P   +++L    IS
Sbjct: 64  GEKGNEVESTNILEFIDQC------TNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAIS 117

Query: 67  ----LSRGNEIENLSLQNPQVYLYNFIIQCL-SNANPLEAIALYREMLIK-GLLPNTYTL 120
               L     + N  +  P +Y +N +I+   S+++P ++  ++  ML      PN +T 
Sbjct: 118 SCSCLIYAKNVFN-QIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTF 176

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
           P++ KA  + + L +G  +H   +K +L S++++ N+L+  Y   G     H++F     
Sbjct: 177 PFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFT---- 232

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
               +D+VSW  +I A+     P +A+L F +M   +++P+ + +V VLSAC+K  DL  
Sbjct: 233 NMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEF 292

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G  I  YI +N F  +  + ++NA++DMY+KCG I  A+ +F++M  K++VSW +M+ G 
Sbjct: 293 GRWICSYIENNGF--TEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGH 350

Query: 301 THRGQFKEA-------------------------------LDIFRRMQ-GLGLKPDDFTL 328
              G + EA                               L +F  MQ     KPD+ TL
Sbjct: 351 AKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTL 410

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
           +C L + A +G ++ G W+H Y+ K+ IN +  +  +L+DMYAKCG +++A  VF +++ 
Sbjct: 411 ICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVER 470

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           +DVY ++AMI  LA++G+   ALD+FS M +  I+P+ VTF  +L AC+HAGLV EG + 
Sbjct: 471 KDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQL 530

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M  +Y + PQ +HY C+VD+FGRAGL+ +A   I+ MP+ P A VWGALLGAC  H 
Sbjct: 531 FEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHG 590

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
            VELAE+  +NL+  EP   GA++L++NIY+    W++   LRK M++  VKK P CS +
Sbjct: 591 NVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSI 650

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           +V G  +EF  GD SHP + +IY  LDEI  + K  GY
Sbjct: 651 DVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGY 688



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 136/492 (27%), Positives = 228/492 (46%), Gaps = 41/492 (8%)

Query: 56  QTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLP 115
           Q Q+      SL  G      S  N  +   +     LS    L  IA+     +KG   
Sbjct: 8   QLQLQPSLSFSLDFGGRFSCSSTSNSTLLRVSVKCSALSTPLSLGQIAMNCTEAVKGEKG 67

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           N      +L+   Q  +    +Q+HA+ ++T+   + Y  + L+  YA+      ++   
Sbjct: 68  NEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKN 127

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR-PDGMILVIVLSACSK 234
            F Q PQ   +L  W TLI+ Y     PT++ L F  M  +    P+      +  A S+
Sbjct: 128 VFNQIPQP--NLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASR 185

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           L  L LG  +H  +     +LS D+FI N+LI+ Y   G    A +VF  MP K+VVSWN
Sbjct: 186 LKVLHLGSVLHGMVIKA--SLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWN 243

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           +MI      G   +AL +F+ M+   +KP+  T+V VL++CA    LE G+W+ +Y++ N
Sbjct: 244 AMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENN 303

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK-------- 406
                  + NA++DMY KCG I+ A  +F  M  +D+ S+T M+ G A  G         
Sbjct: 304 GFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIF 363

Query: 407 ---------AWK--------------ALDIFSEMS-QVGIEPDEVTFVGVLSACSHAGLV 442
                    AW               AL +F EM      +PDEVT +  L A +  G +
Sbjct: 364 DAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAI 423

Query: 443 EEGCKHFLDMS-RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           + G  H++ +  + +++         ++D++ + G + +A+++  ++    D +VW A++
Sbjct: 424 DFG--HWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVER-KDVYVWSAMI 480

Query: 502 GACKIHAKVELA 513
           GA  ++ + + A
Sbjct: 481 GALAMYGQGKAA 492


>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
          Length = 493

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/480 (41%), Positives = 304/480 (63%), Gaps = 5/480 (1%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           + Y+L   + A  +  SL VG Q HA S+K +L S+ +V N L+ +Y+ C    +   + 
Sbjct: 4   DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
                P+   D+VSW T+I  Y++   P +A+ SF  M +  +R D + L+ VL AC++ 
Sbjct: 64  D--SAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACART 121

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
           G + +G   H  +  N F +  + +I ++L+ MY KCG +  AR+VF+ MP +NVV W S
Sbjct: 122 GAMKVGSLCHALVVLNGFEI--NCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTS 179

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           MIAG T  G+FKEA+D+FR MQ  G+K DD T+  V++SC  +G L+LG+++H Y D + 
Sbjct: 180 MIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHG 239

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           +  +  + N+L+DMY+KCG +++A+ +F  +  RDV+++T MI+G A++G   +ALD+F+
Sbjct: 240 LGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFA 299

Query: 416 EM-SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           +M  +  + P+EV F+GVL+ACSH GLVE+G  HF  MS+VYNL P+ EHYGCMVDL GR
Sbjct: 300 QMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGR 359

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           A L+ EA   IK MP+ PD  VW +LL AC+   +V LAE   E + + EP+  G ++L+
Sbjct: 360 AKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLL 419

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           +N+Y++  RW +   +R  M   +  K PGCS +EV G  +EF  GD+SH +T  I   L
Sbjct: 420 SNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGDESHFETEAICNTL 479



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 140/248 (56%), Gaps = 7/248 (2%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P +A+  + +M  + +  +  TL  VL AC ++ +++VG   HA  +      N Y+ ++
Sbjct: 89  PNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSS 148

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +YA CG+++   ++F+  + P  +R++V WT++I    +     EA+  F DM  A 
Sbjct: 149 LVSMYAKCGMVEEARRVFN--RMP--ERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAG 204

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++ D   +  V+S+C ++G L LG  +H Y  D H  L  ++ + N+LIDMY KCG++  
Sbjct: 205 VKADDATIATVVSSCGQMGALDLGRYLHAY-CDGH-GLGKELSVKNSLIDMYSKCGDVNK 262

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCA 336
           A ++F  +  ++V +W  MI G    G   EALD+F +M+G   + P++   + VL +C+
Sbjct: 263 AYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACS 322

Query: 337 NIGWLELG 344
           + G +E G
Sbjct: 323 HGGLVEQG 330



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 7/262 (2%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K   +     + N   +   V   + I  C  +    EA+ L+R+M I G+  +  T
Sbjct: 152 MYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDAT 211

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           +  V+ +C Q  +L +G+ +HAY     L   + V N+L+ +Y+ CG +   +++F    
Sbjct: 212 IATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIF---- 267

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDL 238
           H   +RD+ +WT +I  +       EA+  F  M  +  + P+ +I + VL+ACS  G +
Sbjct: 268 HGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLV 327

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMI 297
             G   H +     +NL P +  +  ++D+  +   +  A +   +MPV  +VV W S++
Sbjct: 328 EQGYH-HFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLL 386

Query: 298 AGLTHRGQFKEALDIFRRMQGL 319
                 GQ   A     R++ L
Sbjct: 387 FACRASGQVGLAEYAAERIEQL 408


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/524 (39%), Positives = 320/524 (61%), Gaps = 38/524 (7%)

Query: 78   LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
            ++ P  +L+N +I+ L+ ++ P +AIA Y++    G++P+  T P++LKAC +  +L  G
Sbjct: 512  IEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEG 571

Query: 137  QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            +Q+H +  K  LLS+++V N+L+ LYA CG +     +F         +D+VSW +LI  
Sbjct: 572  EQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFD----EMVVKDVVSWNSLICG 627

Query: 197  YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            Y + +   + +  F  M    ++ D + ++ V+SAC++LGD S+   + RYI D  + + 
Sbjct: 628  YSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIED--YCIE 685

Query: 257  PDVFIHNALID-------------------------------MYLKCGNIPSARKVFDEM 285
             DV++ N L+D                                Y K  +I SARK+FD++
Sbjct: 686  VDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQI 745

Query: 286  PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
            P K+++SW+SMI+G +    F +AL+IFR+MQ   +KPD   +  V++SCA++G L+LGK
Sbjct: 746  PKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGK 805

Query: 346  WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            WVH Y+ +N+I  D  + N+L+DMY KCG   +A  VF+ MK +D  S+ ++I+GLA +G
Sbjct: 806  WVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNG 865

Query: 406  KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
               ++L++F  M   G  P+ VTF+GVL AC++A LVEEG  HF  M R+Y+L+PQ +HY
Sbjct: 866  FEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHY 925

Query: 466  GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
            GC+VDL GRAG + +AL  I  MP+ PD  VW  LLG+C  H  V +AEIV + L   EP
Sbjct: 926  GCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEP 985

Query: 526  EGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
               G Y L++N Y+S +RW EA+ +R+ M +  V+K+PGCS VE
Sbjct: 986  SNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 137/423 (32%), Positives = 230/423 (54%), Gaps = 43/423 (10%)

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
           H++F  R  P        W  L++AY    +P +A L  F   + +   D       L A
Sbjct: 48  HQVFDRRPTP--------WHALLKAYSHGPHPQDA-LQLFRHARWHAADDTYAFTFALKA 98

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           C+ LG     +++H  +    F      ++H AL+++Y+ CG +  +R  F+EMPVKN V
Sbjct: 99  CAGLGWPRCCMQLHGLVVRKGFEFQ--TYVHTALVNVYILCGCLADSRMAFEEMPVKNAV 156

Query: 292 SWNSMIAGLTHRGQFK-------------------------------EALDIFRRMQGLG 320
           SWN +I G    G+ +                               EA+ +FRRM   G
Sbjct: 157 SWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEG 216

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           + P + T++ V+ + +N+G + +G+ +H Y +K  +  D  +GN+L+D+YAK G I  + 
Sbjct: 217 ISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSL 276

Query: 381 GVFRSM-KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
            VF  M   R++ S+T++I G A+HG + KA+++F++M + GI P+ +TF+ VL ACSH 
Sbjct: 277 RVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHG 336

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLVE+G   F  M   YN+ P  +H+GC++D+ GRAG +REA  +I+  P+  +A VW  
Sbjct: 337 GLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRT 396

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           LLG C  + +VE+ E  M+ ++  E E  G +++++N+ +   R+ +A  +RK + +R  
Sbjct: 397 LLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNS 456

Query: 560 KKT 562
            K+
Sbjct: 457 VKS 459



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 207/399 (51%), Gaps = 44/399 (11%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVC--GLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
           +++HAY + + L +  Y  + ++R YA+    L+ A HK+F   + P        W  LI
Sbjct: 470 KRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFA-HKVFDQIEAPTT----FLWNILI 524

Query: 195 QAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           +   + D P +AI +F+   Q   + PD +    +L AC+++  L+ G ++H +IT    
Sbjct: 525 RGLAQSDAPADAI-AFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHIT--KL 581

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            L  D+F+ N+LI +Y  CGN+  AR VFDEM VK+VVSWNS+I G +   +FK+ L +F
Sbjct: 582 GLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALF 641

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
           + MQ  G+K D  T++ V+++C  +G   +  ++  Y++   I  D ++GN LVD + + 
Sbjct: 642 KLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRR 701

Query: 374 GRIDQAFGVFRSMKCR-------------------------------DVYSYTAMIVGLA 402
           G++  A  VF +MK R                               D+ S+++MI G +
Sbjct: 702 GQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYS 761

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
                  AL+IF +M +  ++PD +    V+S+C+H G ++ G K   +  R  N++  T
Sbjct: 762 QANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG-KWVHEYVRRNNIKADT 820

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
                ++D++ + G  +EAL + K M    D   W +++
Sbjct: 821 IMENSLIDMYMKCGSAKEALQVFKEMK-EKDTLSWNSII 858



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 151/319 (47%), Gaps = 36/319 (11%)

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           +P +A+ L+R         +TY   + LKAC      R   Q+H   ++       YV  
Sbjct: 70  HPQDALQLFRHARWHAA-DDTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHT 128

Query: 157 TLMRLYAVCGLIKAVHKLFH-----------------------------FRQHPQAQRDL 187
            L+ +Y +CG +      F                              F + P   R++
Sbjct: 129 ALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPC--RNV 186

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
           VSW+ +I  Y +   P EA+  F  M    + P  + ++ V+ A S +G + +G  +H Y
Sbjct: 187 VSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGY 246

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM-PVKNVVSWNSMIAGLTHRGQF 306
                  L  DV + N+LID+Y K G+I ++ +VFDEM   +N+VSW S+I+G    G  
Sbjct: 247 CEKE--GLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLS 304

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNA 365
            +A+++F  M+  G++P+  T + VL++C++ G +E G  +  + + + +IN D      
Sbjct: 305 VKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGC 364

Query: 366 LVDMYAKCGRIDQAFGVFR 384
           ++DM  + GR+ +A  + R
Sbjct: 365 IIDMLGRAGRLREAEQIIR 383



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 126/536 (23%), Positives = 233/536 (43%), Gaps = 53/536 (9%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTY 118
           LY KI S+     + +  L    +  +  II   + +   ++A+ L+ +M   G+ PN  
Sbjct: 265 LYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRI 324

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T   VL AC  S    V Q V  +       S +Y +N    +     +I  + +    R
Sbjct: 325 TFLSVLHAC--SHGGLVEQGVAFFK------SMIYEYNINPDVKHFGCIIDMLGRAGRLR 376

Query: 179 QHPQAQRDL------VSWTTLI---QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
           +  Q  RD         W TL+     Y +++     +     + +     D ++L  +L
Sbjct: 377 EAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILAL-EREFGGDFVVLSNML 435

Query: 230 SACSKLGDLSLGIKI--HRYITDNHFNLSP--------DVFIHNALIDMYLKCGNI---- 275
           +   +  D  +  K+   R    + FN+            +I + L + +     +    
Sbjct: 436 TELRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSY 495

Query: 276 ----PS---ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
               P    A KVFD++       WN +I GL       +A+  +++ QG G+ PD+ T 
Sbjct: 496 AILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTF 555

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             +L +CA I  L  G+ +H ++ K  + +D F+ N+L+ +YA CG +  A  VF  M  
Sbjct: 556 PFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVV 615

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG---LVEEG 445
           +DV S+ ++I G +   +    L +F  M   G++ D+VT + V+SAC+  G   + +  
Sbjct: 616 KDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYM 675

Query: 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505
            ++  D    Y ++        +VD FGR G ++ A  +  +M  V +     A++ A  
Sbjct: 676 VRYIED----YCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMK-VRNIVTMNAMIAAYA 730

Query: 506 IHAKVELAEIVMENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
               +  A  + + +    P+ D  ++  M + YS  N + +AL++ ++M+  KVK
Sbjct: 731 KGQDIVSARKIFDQI----PKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVK 782



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 117/492 (23%), Positives = 212/492 (43%), Gaps = 72/492 (14%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P+EA+AL+R M+ +G+ P+  T+  V+ A      + +G+ +H Y  K  L+ +V V N+
Sbjct: 202 PVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNS 261

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ LYA  G I+   ++F        +R+LVSWT++I  +       +A+  F DM +A 
Sbjct: 262 LIDLYAKIGSIQNSLRVF---DEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAG 318

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           +RP+ +  + VL ACS  G +  G+   + +    +N++PDV     +IDM  + G +  
Sbjct: 319 IRPNRITFLSVLHACSHGGLVEQGVAFFKSMI-YEYNINPDVKHFGCIIDMLGRAGRLRE 377

Query: 278 ARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK-PDDFTLVC----- 330
           A ++  + PV+ N   W +++   +  G+ +      +++  L  +   DF ++      
Sbjct: 378 AEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTE 437

Query: 331 ------------------VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
                              + S  NI  +E  K +H Y   + +    +  + ++  YA 
Sbjct: 438 LRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAI 497

Query: 373 CGRIDQAFG--VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
             + D  F   VF  ++    + +  +I GLA       A+  + +    G+ PD +TF 
Sbjct: 498 L-QPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFP 556

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
            +L AC+    + EG            +       G + D+F    LI            
Sbjct: 557 FILKACARINALNEG----------EQMHNHITKLGLLSDIFVSNSLIH----------- 595

Query: 491 VPDAFVWGALLGACK--IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548
                    L  AC    +A+    E+V++++V +     G        YS  NR+K+ L
Sbjct: 596 ---------LYAACGNLCYARSVFDEMVVKDVVSWNSLICG--------YSQCNRFKDIL 638

Query: 549 KLRKKMKERKVK 560
            L K M+   VK
Sbjct: 639 ALFKLMQNEGVK 650



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 43/265 (16%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A +VFD  P      W++++   +H    ++AL +FR  +      D +     L +CA 
Sbjct: 47  AHQVFDRRPT----PWHALLKAYSHGPHPQDALQLFRHARWHA-ADDTYAFTFALKACAG 101

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC------------------------ 373
           +GW      +H  + +       ++  ALV++Y  C                        
Sbjct: 102 LGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVV 161

Query: 374 -------GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
                  G ++ A  +F  M CR+V S++ MI G     +  +A+ +F  M   GI P E
Sbjct: 162 ITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSE 221

Query: 427 VTFVGVLSACSHAG--LVEEGCKHFLDMSR-VYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           +T + V+ A S+ G  L+ E    + +    V++++        ++DL+ + G I+ +L 
Sbjct: 222 ITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNS----LIDLYAKIGSIQNSLR 277

Query: 484 LIKSMPLVPDAFVWGALLGACKIHA 508
           +   M    +   W +++    +H 
Sbjct: 278 VFDEMLDRRNLVSWTSIISGFAMHG 302


>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
 gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
 gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 570

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/571 (40%), Positives = 341/571 (59%), Gaps = 56/571 (9%)

Query: 75  NLSL-QNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQS 132
           N+SL Q P + +YN +++ L++     + +AL+ E+  +GL P+ +TLP VLK+  + + 
Sbjct: 2   NMSLLQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRK 61

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           +  G++VH Y++K  L  + YV N+LM +YA  G I+  HK+F   + PQ  RD+VSW  
Sbjct: 62  VIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFD--EMPQ--RDVVSWNG 117

Query: 193 LIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
           LI +YV      +AI  F  M Q +NL+ D   +V  LSACS L +L +G +I+R++   
Sbjct: 118 LISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVV-T 176

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM-------------------------- 285
            F +S  V I NAL+DM+ KCG +  AR VFD M                          
Sbjct: 177 EFEMS--VRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARV 234

Query: 286 -----PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
                PVK+VV W +M+ G     +F EAL++FR MQ  G++PD+F LV +L  CA  G 
Sbjct: 235 LFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGA 294

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           LE GKW+H Y+++N +  D  +G ALVDMYAKCG I+ A  VF  +K RD  S+T++I G
Sbjct: 295 LEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYG 354

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
           LA++G + +ALD++ EM  VG+  D +TFV VL+AC+H G V EG K F  M+  +N+QP
Sbjct: 355 LAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQP 414

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSM------PLVPDAFVWGALLGACKIHAKVELAE 514
           ++EH  C++DL  RAGL+ EA +LI  M       LVP   V+ +LL A + +  V++AE
Sbjct: 415 KSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVP---VYCSLLSAARNYGNVKIAE 471

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
            V E L + E     A+ L+ ++Y+S NRW++   +R+KMK+  ++K PGCS +E+ G  
Sbjct: 472 RVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVG 531

Query: 575 YEFRKGDK--SHPKTLEIYKLLDEIMHQSKN 603
           +EF  GD   SHPK  EI  +L    HQ+ N
Sbjct: 532 HEFIVGDDLLSHPKMDEINSML----HQTTN 558


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/504 (41%), Positives = 314/504 (62%), Gaps = 10/504 (1%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P  A  +YR ++  G LP+ +T P VLK+C +   +  G+QVH   +K   + N+YV N+
Sbjct: 15  PKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIKMGFVCNIYVENS 74

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+  Y+VC       ++F         RD+VSWT +I  YV+     EA+  F  M   +
Sbjct: 75  LVHFYSVCKRFGDASRVFD----EMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRM---D 127

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           + P+    V VL AC + G LS+G  IH     + F +  +V   NAL+DMY+KCG +P 
Sbjct: 128 VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEV--SNALMDMYVKCGCLPG 185

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A++VFDE+  K++VSW S+I+GL      KEAL++F+ MQ  G++PD   L  VL++CA 
Sbjct: 186 AKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACAR 245

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +G L+ G+WVH ++D+  I  D  IG A+VDMYAKCG I+ +  +F  M  ++V ++ A+
Sbjct: 246 LGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNAL 305

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM-SRVY 456
           + GLA+HG A+K L++F EM +VG+ P+EVTF+ +L+AC H GLV EG ++F  M  + Y
Sbjct: 306 LNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQY 365

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
           NL P+ EHYGCMVDL  RA L+ EAL+L K+MP+ PD  + GALL ACK +   EL + +
Sbjct: 366 NLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEI 425

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
           ++  V  +    G Y+L++NI++   RW +  ++R+ MKE+ +KK PG +++E+ G+ +E
Sbjct: 426 LDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIELDGKAHE 485

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQ 600
           F  GD  HP+   I  LL  +  Q
Sbjct: 486 FIVGDTRHPQDKRIRLLLKILSDQ 509



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 167/336 (49%), Gaps = 13/336 (3%)

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           +  L+  Y   D P  A L +  + +    PD      VL +C+K   +  G ++H  I 
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
              F    ++++ N+L+  Y  C     A +VFDEM V++VVSW  +I+G    G F EA
Sbjct: 62  KMGFVC--NIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEA 119

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           + +F RM    ++P+  T V VL +C   G+L +GK +H    K+       + NAL+DM
Sbjct: 120 VGLFLRMD---VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDM 176

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           Y KCG +  A  VF  +  +D+ S+T++I GL       +AL++F +M   GIEPD +  
Sbjct: 177 YVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIIL 236

Query: 430 VGVLSACSHAGLVEEGC---KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
             VLSAC+  G ++ G    +H    +  +++Q  T     MVD++ + G I  ++ +  
Sbjct: 237 TSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTA----MVDMYAKCGCIEMSMQIFN 292

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
            MP   +   W ALL    +H        + E +VR
Sbjct: 293 GMPH-KNVLTWNALLNGLAMHGHAYKVLELFEEMVR 327



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 13/254 (5%)

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           +N++++G     + K A  ++RR+   G  PD FT   VL SCA    +  G+ VH  + 
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K     + ++ N+LV  Y+ C R   A  VF  M  RDV S+T +I G    G   +A+ 
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDL 471
           +F  M    +EP+  TFV VL AC   G +  G   H L     + +  +  +   ++D+
Sbjct: 122 LFLRMD---VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSN--ALMDM 176

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALL-GACKIHAKVELAEIVME-NLVRFEPEGDG 529
           + + G +  A  +   +    D   W +++ G  + +   E  E+  +      EP+G  
Sbjct: 177 YVKCGCLPGAKQVFDELA-EKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDG-- 233

Query: 530 AYILMTNIYSSKNR 543
             I++T++ S+  R
Sbjct: 234 --IILTSVLSACAR 245


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/508 (38%), Positives = 314/508 (61%), Gaps = 7/508 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA   + +M+  G+ PN  T   +L AC    +L+ GQQ+  + ++    S+  V   L+
Sbjct: 396 EAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALL 455

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG +K  H++F       +++++V+W  +I AYV+ +    A+ +F  + +  ++
Sbjct: 456 SMYAKCGSLKDAHRVFE----KISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+      +L+ C     L LG  +H  I      L  D+ + NAL+ M++ CG++ SA+
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESDLHVSNALVSMFVNCGDLMSAK 569

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +F++MP +++VSWN++IAG    G+ + A D F+ MQ  G+KPD  T   +LN+CA+  
Sbjct: 570 NLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPE 629

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L  G+ +H  + +   + D  +G  L+ MY KCG I+ A  VF  +  ++VYS+T+MI 
Sbjct: 630 ALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIA 689

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G A HG+  +AL++F +M Q G++PD +TFVG LSAC+HAGL+EEG  HF  M + +N++
Sbjct: 690 GYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIE 748

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P+ EHYGCMVDLFGRAGL+ EA++ I  M + PD+ VWGALLGAC++H  VELAE   + 
Sbjct: 749 PRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQK 808

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
            +  +P  +G +++++NIY++   WKE  K+RK M +R V K PG S +EV G+ + F  
Sbjct: 809 KLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYS 868

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            DK+HP+T EI+  L+ +  + +  GY+
Sbjct: 869 DDKTHPQTEEIHAELERLHMEMRQLGYV 896



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 231/407 (56%), Gaps = 14/407 (3%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T   +L+ C + ++L  G++++ +  K+ +  ++++ NTL+ +YA CG   +  ++F   
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFD-- 169

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                ++D+ SW  L+  YV+     EA      M Q +++PD    V +L+AC+   ++
Sbjct: 170 --DMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNV 227

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G +++  I    ++   D+F+  ALI+M++KCG+I  A KVFD +P +++V+W SMI 
Sbjct: 228 DKGRELYNLILKAGWD--TDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMIT 285

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           GL   G+FK+A ++F+RM+  G++PD    V +L +C +   LE GK VH  + +   +T
Sbjct: 286 GLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT 345

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           + ++G A++ MY KCG ++ A  VF  +K R+V S+TAMI G A HG+  +A   F++M 
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           + GIEP+ VTF+ +L ACS    ++ G +   H ++     + + +T     ++ ++ + 
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRT----ALLSMYAKC 461

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
           G +++A  + + +    +   W A++ A   H + + A    + L++
Sbjct: 462 GSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALATFQALLK 507



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 209/415 (50%), Gaps = 10/415 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA  L+ +M+   + P+  T   +L AC  ++++  G++++   +K    ++++V   L+
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            ++  CG I    K+F         RDLV+WT++I    +     +A   F  M +  ++
Sbjct: 254 NMHIKCGDIGDATKVFD----NLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  V +L AC+    L  G K+H  + +  ++   ++++  A++ MY KCG++  A 
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWD--TEIYVGTAILSMYTKCGSMEDAL 367

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +VFD +  +NVVSW +MIAG    G+  EA   F +M   G++P+  T + +L +C++  
Sbjct: 368 EVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPS 427

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ G+ +  ++ +    +D  +  AL+ MYAKCG +  A  VF  +  ++V ++ AMI 
Sbjct: 428 ALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMIT 487

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVYNL 458
               H +   AL  F  + + GI+P+  TF  +L+ C  +  +E G   HFL M     L
Sbjct: 488 AYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GL 545

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           +        +V +F   G +  A +L   MP   D   W  ++     H K ++A
Sbjct: 546 ESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 131/283 (46%), Gaps = 46/283 (16%)

Query: 273 GNIPSAR-KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           G  P  R  VF +  +K+    N+++  L+  GQF EA+ +  R+    ++    T   +
Sbjct: 59  GRCPKGRCVVFAD--IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSAL 116

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L  C     L  G+ ++ ++ K+ +  D F+ N L++MYAKCG    A  +F  M+ +DV
Sbjct: 117 LQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDV 176

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------ 445
           YS+  ++ G   HG   +A  +  +M Q  ++PD+ TFV +L+AC+ A  V++G      
Sbjct: 177 YSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNL 236

Query: 446 ----------------------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREA 481
                                 C    D ++V++  P  +   +  M+    R G  ++A
Sbjct: 237 ILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQA 296

Query: 482 LDLIKSMP---LVPDAFVWGALLGAC----------KIHAKVE 511
            +L + M    + PD   + +LL AC          K+HA+++
Sbjct: 297 CNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK 339


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/508 (38%), Positives = 314/508 (61%), Gaps = 7/508 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA   + +M+  G+ PN  T   +L AC    +L+ GQQ+  + ++    S+  V   L+
Sbjct: 396 EAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALL 455

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG +K  H++F       +++++V+W  +I AYV+ +    A+ +F  + +  ++
Sbjct: 456 SMYAKCGSLKDAHRVFE----KISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+      +L+ C     L LG  +H  I      L  D+ + NAL+ M++ CG++ SA+
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESDLHVSNALVSMFVNCGDLMSAK 569

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +F++MP +++VSWN++IAG    G+ + A D F+ MQ  G+KPD  T   +LN+CA+  
Sbjct: 570 NLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPE 629

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L  G+ +H  + +   + D  +G  L+ MY KCG I+ A  VF  +  ++VYS+T+MI 
Sbjct: 630 ALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIT 689

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G A HG+  +AL++F +M Q G++PD +TFVG LSAC+HAGL+EEG  HF  M + +N++
Sbjct: 690 GYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIE 748

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P+ EHYGCMVDLFGRAGL+ EA++ I  M + PD+ VWGALLGAC++H  VELAE   + 
Sbjct: 749 PRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQK 808

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
            +  +P  +G +++++NIY++   WKE  K+RK M +R V K PG S +EV G+ + F  
Sbjct: 809 KLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYS 868

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            DK+HP+T EI+  L+ +  + +  GY+
Sbjct: 869 DDKTHPQTEEIHAELERLHMEMRQLGYV 896



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 232/407 (57%), Gaps = 14/407 (3%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T   +L+ C + ++L  G++++ +  K+ +  +++++NTL+ +YA CG   +  ++F   
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFD-- 169

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                ++D+ SW  L+  YV+     EA      M Q +++PD    V +L+AC+   ++
Sbjct: 170 --DMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNV 227

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G +++  I    ++   D+F+  ALI+M++KCG+I  A KVFD +P +++V+W SMI 
Sbjct: 228 DKGRELYNLILKAGWD--TDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMIT 285

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           GL   G+FK+A ++F+RM+  G++PD    V +L +C +   LE GK VH  + +   +T
Sbjct: 286 GLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT 345

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           + ++G A++ MY KCG ++ A  VF  +K R+V S+TAMI G A HG+  +A   F++M 
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           + GIEP+ VTF+ +L ACS    ++ G +   H ++     + + +T     ++ ++ + 
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRT----ALLSMYAKC 461

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
           G +++A  + + +    +   W A++ A   H + + A    + L++
Sbjct: 462 GSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALATFQALLK 507



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 209/415 (50%), Gaps = 10/415 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA  L+ +M+   + P+  T   +L AC  ++++  G++++   +K    ++++V   L+
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            ++  CG I    K+F         RDLV+WT++I    +     +A   F  M +  ++
Sbjct: 254 NMHIKCGDIGDATKVFD----NLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  V +L AC+    L  G K+H  + +  ++   ++++  A++ MY KCG++  A 
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWD--TEIYVGTAILSMYTKCGSMEDAL 367

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +VFD +  +NVVSW +MIAG    G+  EA   F +M   G++P+  T + +L +C++  
Sbjct: 368 EVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPS 427

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ G+ +  ++ +    +D  +  AL+ MYAKCG +  A  VF  +  ++V ++ AMI 
Sbjct: 428 ALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMIT 487

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVYNL 458
               H +   AL  F  + + GI+P+  TF  +L+ C  +  +E G   HFL M     L
Sbjct: 488 AYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GL 545

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           +        +V +F   G +  A +L   MP   D   W  ++     H K ++A
Sbjct: 546 ESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 131/283 (46%), Gaps = 46/283 (16%)

Query: 273 GNIPSAR-KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           G  P  R  VF +  +K+    N+++  L+  GQF EA+ +  R+    ++    T   +
Sbjct: 59  GRCPKGRCVVFAD--IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSAL 116

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L  C     L  G+ ++ ++ K+ +  D F+ N L++MYAKCG    A  +F  M+ +DV
Sbjct: 117 LQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDV 176

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------ 445
           YS+  ++ G   HG   +A  +  +M Q  ++PD+ TFV +L+AC+ A  V++G      
Sbjct: 177 YSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNL 236

Query: 446 ----------------------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREA 481
                                 C    D ++V++  P  +   +  M+    R G  ++A
Sbjct: 237 ILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQA 296

Query: 482 LDLIKSMP---LVPDAFVWGALLGAC----------KIHAKVE 511
            +L + M    + PD   + +LL AC          K+HA+++
Sbjct: 297 CNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK 339


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/528 (40%), Positives = 313/528 (59%), Gaps = 8/528 (1%)

Query: 81  PQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           P V+L+N II+  S+ N   +AI +Y  M   G+ P+ +TLP VLKAC     L VG++V
Sbjct: 132 PSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRV 191

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H    +    S+V+V N L+ LYA CG ++    +F         R++VSWT++I  Y +
Sbjct: 192 HGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFE----GLDDRNIVSWTSMISGYGQ 247

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
              P EA+  F  M Q N++PD + LV VL A + + DL  G  IH  +        PD+
Sbjct: 248 NGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDL 307

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            I  +L  MY KCG +  AR  FD+M + NV+ WN+MI+G    G   EA+ +F+ M   
Sbjct: 308 LI--SLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISK 365

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            ++ D  T+   + +CA +G L+L KW+  Y++K     D F+  AL+DM+AKCG +D A
Sbjct: 366 NIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLA 425

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             VF     +DV  ++AMIVG  +HG+   A+D+F  M Q G+ P++VTFVG+L+AC+H+
Sbjct: 426 REVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHS 485

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLVEEG + F  M + Y ++ + +HY C+VDL GR+G + EA D I +MP+ P   VWGA
Sbjct: 486 GLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGA 544

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           LLGACKI+  V L E   E L   +P   G Y+ ++N+Y+S   W    K+R  M+E+ +
Sbjct: 545 LLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGL 604

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            K  G SL+E+ G+   FR GDKSHP+  EI++ L+ +  + K  G+I
Sbjct: 605 SKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFI 652


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/619 (35%), Positives = 337/619 (54%), Gaps = 92/619 (14%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           ++N   +++N +++    +N  E A+ LY+ M+   + P+ YT P V++AC        G
Sbjct: 101 IENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGG 160

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-------------------- 176
           +++H + +K    S+VYV NTL+ +YAVCG ++   KLF                     
Sbjct: 161 KEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKK 220

Query: 177 ---------FRQHPQA-----------------------------QRDLVSWTTLIQAYV 198
                    F Q PQ                              ++D+VSW+ LI  Y 
Sbjct: 221 GDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYE 280

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +     EA++ F +M    +R D +++V VLSAC+ L  +  G  IH  +      +   
Sbjct: 281 QNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVI--RMGIESY 338

Query: 259 VFIHNALIDMY-------------------------------LKCGNIPSARKVFDEMPV 287
           V + NALI MY                               +KCG++  AR +FD MP 
Sbjct: 339 VNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPE 398

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K++VSW+++I+G      F E L +F  MQ   ++PD+  LV V+++C ++  L+ GKWV
Sbjct: 399 KDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWV 458

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H Y+ KN +  +  +G  L+DMY KCG ++ A  VF  M+ + V S+ A+I+GLA++G  
Sbjct: 459 HAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLV 518

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            ++LD+FSEM   G+ P+E+TF+GVL AC H GLV+EG  HF  M   + ++P  +HYGC
Sbjct: 519 ERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGC 578

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           MVDL GRAGL+ EA  LI+SMP+ PD   WGALLGACK H   E+ E V   L+  +P+ 
Sbjct: 579 MVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDH 638

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
           DG ++L++NI++SK  W++ L++R  MK++ V KTPGCSL+E  G  +EF  GDK+HP  
Sbjct: 639 DGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWI 698

Query: 588 LEIYKLLDEIMHQSKNHGY 606
            ++  +L+E+  + K  GY
Sbjct: 699 NKVEGMLNEMAKRLKMEGY 717


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/497 (40%), Positives = 309/497 (62%), Gaps = 9/497 (1%)

Query: 113 LLPNT--YTLPYVLKACWQ-SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK 169
           LLPN    T P  LK+  +    LR G+Q+HA S+K    +N +V  +L+ LYA CGL+ 
Sbjct: 64  LLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLH 123

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
              ++F    HP      VSWT LI AY+      EA+    +     +RPD    V VL
Sbjct: 124 RAQRVFDEMPHPST----VSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL 179

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           +AC+++ DL+ G  + R        ++  VF+  A +D+Y+KCG +  AR+VFD+M  K+
Sbjct: 180 TACARVADLATGETVWRAAEQE--GIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKD 237

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
            V+W +M+ G    G  +EALD+F  MQ  G++PD + +   L++C  +G L+LG+    
Sbjct: 238 AVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIR 297

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
            +D +    +  +G AL+DMYAKCG   +A+ VF+ M+ +D+  + AMI+GL + G    
Sbjct: 298 MVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKT 357

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           A  +  +M + G++ ++ TF+G+L +C+H GL+++G ++F +M+++Y++ P+ EHYGC+V
Sbjct: 358 AFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIV 417

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL  RAGL++EA  LI  MP+  +A + GALLG CKIH   ELAE V+  L+R EP   G
Sbjct: 418 DLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSG 477

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y++++NIYS++ RW++A KLR  MKE+ V+K P CS VE  G+ +EFR GDKSHP + +
Sbjct: 478 NYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQ 537

Query: 590 IYKLLDEIMHQSKNHGY 606
           IYK LDE+  + K  GY
Sbjct: 538 IYKKLDELGLEMKTMGY 554



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 206/437 (47%), Gaps = 20/437 (4%)

Query: 25  LHQSPRLESSKSVGQLKQFHAFIIKTGS---PQHQTQIL--YDKIISLSRGNEIENLSLQ 79
           L  + RL      G+  Q HA  +K  S   P   T +L  Y +   L R   + +  + 
Sbjct: 77  LKSASRLPHPLRAGE--QLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFD-EMP 133

Query: 80  NPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +P    +  +I    +A  L EA+ + R     G+ P+++T   VL AC +   L  G+ 
Sbjct: 134 HPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGET 193

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           V   + +  +  +V+V    + LY  CG +    ++F   +     +D V+W  ++  Y 
Sbjct: 194 VWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMR----DKDAVAWGAMVGGYA 249

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
              +P EA+  F  M    +RPD   +   LSAC++LG L LG +  R +  + F  +P 
Sbjct: 250 SNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNP- 308

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             +  ALIDMY KCG+   A  VF +M  K+++ WN+MI GL   G  K A  +  +M+ 
Sbjct: 309 -VLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEK 367

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
            G+K +D T + +L SC + G ++ G ++ H      HI+        +VD+ ++ G + 
Sbjct: 368 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQ 427

Query: 378 QAFGVFRSMKC-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSA 435
           +A  +   M    +     A++ G  IH  A  A  + +++  + +EP +   +V + + 
Sbjct: 428 EAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQL--IRLEPWNSGNYVMLSNI 485

Query: 436 CSHAGLVEEGCKHFLDM 452
            S+ G  E+  K  LDM
Sbjct: 486 YSNRGRWEDAAKLRLDM 502


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/497 (40%), Positives = 309/497 (62%), Gaps = 9/497 (1%)

Query: 113 LLPNT--YTLPYVLKACWQ-SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK 169
           LLPN    T P  LK+  +    LR G+Q+HA S+K    +N +V  +L+ LYA CGL+ 
Sbjct: 111 LLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLH 170

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
              ++F    HP      VSWT LI AY+      EA+    +     +RPD    V VL
Sbjct: 171 RAQRVFDEMPHPST----VSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL 226

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           +AC+++ DL+ G  + R        ++  VF+  A +D+Y+KCG +  AR+VFD+M  K+
Sbjct: 227 TACARVADLATGETVWRAAEQE--GIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKD 284

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
            V+W +M+ G    G  +EALD+F  MQ  G++PD + +   L++C  +G L+LG+    
Sbjct: 285 AVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIR 344

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
            +D +    +  +G AL+DMYAKCG   +A+ VF+ M+ +D+  + AMI+GL + G    
Sbjct: 345 MVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKT 404

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           A  +  +M + G++ ++ TF+G+L +C+H GL+++G ++F +M+++Y++ P+ EHYGC+V
Sbjct: 405 AFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIV 464

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL  RAGL++EA  LI  MP+  +A + GALLG CKIH   ELAE V+  L+R EP   G
Sbjct: 465 DLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSG 524

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y++++NIYS++ RW++A KLR  MKE+ V+K P CS VE  G+ +EFR GDKSHP + +
Sbjct: 525 NYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQ 584

Query: 590 IYKLLDEIMHQSKNHGY 606
           IYK LDE+  + K  GY
Sbjct: 585 IYKKLDELGLEMKTMGY 601



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 206/437 (47%), Gaps = 20/437 (4%)

Query: 25  LHQSPRLESSKSVGQLKQFHAFIIKTGS---PQHQTQIL--YDKIISLSRGNEIENLSLQ 79
           L  + RL      G+  Q HA  +K  S   P   T +L  Y +   L R   + +  + 
Sbjct: 124 LKSASRLPHPLRAGE--QLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFD-EMP 180

Query: 80  NPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +P    +  +I    +A  L EA+ + R     G+ P+++T   VL AC +   L  G+ 
Sbjct: 181 HPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGET 240

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           V   + +  +  +V+V    + LY  CG +    ++F   +     +D V+W  ++  Y 
Sbjct: 241 VWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMR----DKDAVAWGAMVGGYA 296

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
              +P EA+  F  M    +RPD   +   LSAC++LG L LG +  R +  + F  +P 
Sbjct: 297 SNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNP- 355

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             +  ALIDMY KCG+   A  VF +M  K+++ WN+MI GL   G  K A  +  +M+ 
Sbjct: 356 -VLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEK 414

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
            G+K +D T + +L SC + G ++ G ++ H      HI+        +VD+ ++ G + 
Sbjct: 415 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQ 474

Query: 378 QAFGVFRSMKC-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSA 435
           +A  +   M    +     A++ G  IH  A  A  + +++  + +EP +   +V + + 
Sbjct: 475 EAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQL--IRLEPWNSGNYVMLSNI 532

Query: 436 CSHAGLVEEGCKHFLDM 452
            S+ G  E+  K  LDM
Sbjct: 533 YSNRGRWEDAAKLRLDM 549


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/576 (38%), Positives = 343/576 (59%), Gaps = 15/576 (2%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL---SLQNPQVYLYNFIIQCLS- 94
            LKQ  + +I +G   H T  L D + S ++      L    L  P ++L+N II+  S 
Sbjct: 23  HLKQTTSILITSGLAHH-TFFLSDILRSATKDLGYTLLLFDRLATPYIFLWNTIIRGFSA 81

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ--QVHAYSMKTALLSNV 152
           ++ P   +  Y  +   G++P+ +T P +LKA      LR     Q +A+ +K  L  + 
Sbjct: 82  SSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKA---FSKLRNENPFQFYAHIVKFGLDFDA 138

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           +V N+L+  +A CG +    +LF       A++D+VSWT LI   ++     EA+  F +
Sbjct: 139 FVQNSLVSAFAHCGYVDCSRRLFI----ETAKKDVVSWTALINGCLRNGRAVEALECFVE 194

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M  + +  D + +V VL A + L D+  G  +H +  ++   +  DV++ +AL+DMY KC
Sbjct: 195 MRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESG-RVIWDVYVGSALVDMYSKC 253

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G    A KVF+EMP +N+VSW ++IAG     ++KEAL +F+ M   G++P+  T+   L
Sbjct: 254 GYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSAL 313

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +CA +G L+ G+W+H Y+D++ +  +  +G ALVDMY+KCG +D+A  VF  +  +DVY
Sbjct: 314 TACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVY 373

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            +TAMI GLA+ G A  +L++FS+M +  ++P+ VTF+GVLSAC+H GLV+EG + F  M
Sbjct: 374 PWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLM 433

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              Y L+P  +HYGCMVDL GRAG + EA+  I+SMP+ P   VWGAL   C IH   EL
Sbjct: 434 ICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFEL 493

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            E +  +L++ +P   G YIL+ N+YS   +W+ A  +R+ MK + V K+PGCS +EV G
Sbjct: 494 GEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNG 553

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
             +EF   DKSH +++ +Y +L+ +  Q K   Y L
Sbjct: 554 VIHEFIAFDKSHTESINVYMMLESVSAQLKLATYAL 589


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/594 (37%), Positives = 346/594 (58%), Gaps = 48/594 (8%)

Query: 19  FQQLSLLHQSPRL-ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII---SLSRGN--- 71
           F   S+  +S R+ ++S S    K+ HA +I+T    H    L   +I   SLS  N   
Sbjct: 11  FTSSSMAPKSGRVSKNSISTDTSKELHAHLIRT--QLHTDPFLMSDVIRSYSLSSTNLHK 68

Query: 72  -EIENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQ 129
             +    ++ P + ++N +I+ LS ++ P+EAI +Y  M  +G+  N  TL ++ KAC +
Sbjct: 69  AHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACAR 128

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
              +  G+++H +++K    S ++V N L+ +YA+CG +    K+F         RDLVS
Sbjct: 129 VSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFD----GMLDRDLVS 184

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W TLI  Y + +   E +  F  M  AN++ D + +V ++ ACS LGD      + +YI 
Sbjct: 185 WNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIK 244

Query: 250 DNHFNLSPDVFIHNALIDMY-------------------------------LKCGNIPSA 278
           +N  NL  DV++ N LIDMY                                K GN+ +A
Sbjct: 245 EN--NLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAA 302

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           RK+FD MP ++V+SW SMI G +   QF +A+ +F+ M    +KPD  T+  VL++CA++
Sbjct: 303 RKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHL 362

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G L++G  VH Y+ ++ +  D ++GN+L+DMY KCG +++A  VF  MK +D  S+T++I
Sbjct: 363 GKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVI 422

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            GLA++G A  ALD+FS+M + G++P   TFVG+L AC+HAGLV +G ++F  M  V+ L
Sbjct: 423 SGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGL 482

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P  +HYGC+VDL  R+G I +A + IK MP+VPD  VW  LL ACK+H  V LAEI  +
Sbjct: 483 VPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATK 542

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            L+  +P   G Y+L++N Y+  +RW +A+K+R+ M++  V+K  G S +EV G
Sbjct: 543 RLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDG 596


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/613 (36%), Positives = 340/613 (55%), Gaps = 51/613 (8%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI-LYDKIISLSRGNEIENLSLQNPQVYLY 86
           SP      ++ Q KQ HA IIKT    H  QI L D    LS   +             +
Sbjct: 47  SPSQHDLSTLEQTKQIHAHIIKTHF-HHALQIPLNDFPSGLSPSAQ-------------W 92

Query: 87  NFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           NF+I   +  N P  A+ +Y ++       + +  P VLKAC Q    ++G+++H + +K
Sbjct: 93  NFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLK 152

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
             L  +V+V N LM +Y  C  ++    +F        +RD+VSW+T+I++  +      
Sbjct: 153 KGLDRDVFVGNALMLMYGECACVEYARLVFD----KMMERDVVSWSTMIRSLSRNKEFDM 208

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           A+    +M    +RP  + +V +++  +   ++ +G  +H Y+  N  N    V    AL
Sbjct: 209 ALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTAL 268

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA---------------- 309
           +DMY KCG++  AR++F+ +  K VVSW +MIAG     + +EA                
Sbjct: 269 LDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWT 328

Query: 310 ---------------LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
                           ++F +M+  G++P   T+V +L+ CA  G L+LGKWVH+Y+DK 
Sbjct: 329 AMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKE 388

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            +  D  +  ALVDMYAKCG I+ A  +F     RD+  + A+I G A+HG   +ALDIF
Sbjct: 389 RVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIF 448

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           +EM + G++P+++TF+G+L ACSHAGLV EG K F  M   + L PQ EHYGCMVDL GR
Sbjct: 449 AEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGR 508

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           AGL+ EA ++IKSMP+ P+  VWGAL+ AC++H   +L E+    L+  EPE  G  +LM
Sbjct: 509 AGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLM 568

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           +NIY++ NRW +A  +RK MK   +KK PG S++EV G  +EF  GD+SHP+   I ++L
Sbjct: 569 SNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEML 628

Query: 595 DEIMHQSKNHGYI 607
            E+  +    GY+
Sbjct: 629 AEMRRKLNEAGYV 641


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/534 (38%), Positives = 322/534 (60%), Gaps = 28/534 (5%)

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           ++P  A+  Y  M    +  +++ +P VLKAC Q    R+G+++H +S+K  L+S+V+V 
Sbjct: 88  SHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVV 147

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY--PTEAILS---- 209
           N LM++Y+ CG + +   LF       ++RD+VSW+T+I+AY+ + Y     +I+S    
Sbjct: 148 NALMQMYSECGSLVSARLLFD----KMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAM 203

Query: 210 ----------------FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
                           F  M + N+ P+ + ++ ++ +C  +G + LG ++H YI  N F
Sbjct: 204 IAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGF 263

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            +S  + +  AL+DMY KCG I SAR +FD M  K+V++W +MI+          A  +F
Sbjct: 264 GMS--LALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLF 321

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
            +M+  G++P++ T+V +L+ CA  G L++GKW H Y+DK  +  D  +  AL+DMYAKC
Sbjct: 322 VQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKC 381

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G I  A  +F     RD+ ++  M+ G  +HG   KAL +F+EM  +G++P+++TF+G L
Sbjct: 382 GDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGAL 441

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
            ACSHAGLV EG   F  M   + L P+ EHYGCMVDL GRAGL+ EA  +I+SMP+ P+
Sbjct: 442 HACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPN 501

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
             +WGA+L ACKIH    + E+    L+  EP+  G  +LM+NIY++ NRW +   +RK 
Sbjct: 502 IAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKA 561

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +K+  +KK PG S +EV G  ++F+ GD +HP   +I ++L E+  + K  GY+
Sbjct: 562 VKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYL 615


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/613 (36%), Positives = 353/613 (57%), Gaps = 39/613 (6%)

Query: 30  RLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQN-----PQVY 84
           +L   KS+  +KQ HA I++T         L++   S S  N    L+L +     P+  
Sbjct: 21  KLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALNLFSSISPLPESI 80

Query: 85  LYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           ++N +++ LS +  P   I  Y+ +   G   +  + P +LKA  +  +L  G ++H ++
Sbjct: 81  VFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFA 140

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
            K A LS+ +V   LM +YA CG I     +F       +QRD+V+W T+I+ Y +    
Sbjct: 141 FKIATLSDPFVETGLMDMYAACGRINYARNVFD----EMSQRDVVTWNTMIERYCRFGLL 196

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP------ 257
            EA   F +M  +N+ PD MIL  ++SAC + G++     I+ ++ +N   +        
Sbjct: 197 DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTAL 256

Query: 258 -----------------------DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
                                  ++F+  A++  Y K G +  AR +FD+  +K++V W 
Sbjct: 257 VTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWT 316

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           +MI+        +EAL +F  M   G+KPD  T++ V+++C N+G L+  KWVH Y   N
Sbjct: 317 TMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLN 376

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            + +   I NAL++MYAKCG +D A  VF  M  R+V S+++MI   A+HG+A  +L +F
Sbjct: 377 GLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLF 436

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           ++M Q  +EP+EVTFVGVL  CSH+GLVEEG K F  M+  YN+ P+ EHYGCMVDLFGR
Sbjct: 437 AQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGR 496

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           A L+REAL++I+SMP+ P+  +WG+L+ AC++H ++EL E+  + +++ EP+ DGA +LM
Sbjct: 497 ANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLM 556

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           +NIY+ + RW     +R  M+++KV K  G S +++ G+ +EF  GDK H ++ EIY  L
Sbjct: 557 SNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKL 616

Query: 595 DEIMHQSKNHGYI 607
            E++ + K  GY+
Sbjct: 617 YEVVSKLKLAGYV 629


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/559 (38%), Positives = 340/559 (60%), Gaps = 29/559 (5%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQ 82
           LE  K++ +LK+ H  +I T   Q    I   +++     ++  NL+        +  P 
Sbjct: 12  LEKCKTMAELKRLHGLMITTSVIQDV--IPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPS 69

Query: 83  VYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           +Y++N +I+  S + +P EA+ +YREM  KG  P+ +T P+VLKAC       +GQ VH 
Sbjct: 70  LYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHN 129

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             +KT    +VY    L+++YA CG ++A  K+F        + ++V+WT+LI   +  D
Sbjct: 130 CIVKTGFEVDVYAATALLQMYAACGDMEAALKVFD----DIPKWNVVAWTSLIAGCISND 185

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR---------YITDNH 252
            P+EA+  + DM   ++ P+ + +V VL AC++  DL+ G  +H          + ++++
Sbjct: 186 CPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSN 245

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           FN    V +  A++DMY KCG++ +AR +F++MP +N+V+WNSMI      GQ  EALD+
Sbjct: 246 FN----VILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDL 301

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F  M+  G  PD  T +CV+ +CA++G L  G+ +H Y+ K ++  D  IG ALVDMYAK
Sbjct: 302 FSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAK 361

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ-VGIEPDEVTFVG 431
            G  ++A  VF  ++ +DV ++T++I+GLA+HG   +AL  F +M +   + PDE+T++G
Sbjct: 362 SGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIG 421

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           VLSACSH G VE+G  HF+ M  V+ ++P T+HYGCMVDL  RAG + EA  L++ MP+ 
Sbjct: 422 VLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVE 481

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P+  +W ALL  CKI+  +++A+ V   +   E +G G Y+L++NIY+   RW+E    R
Sbjct: 482 PNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMAR 541

Query: 552 KKMKERKVKKTPGCSLVEV 570
           + MKERK++K+ G S VE+
Sbjct: 542 ELMKERKIQKSLGHSSVEM 560


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/596 (37%), Positives = 348/596 (58%), Gaps = 24/596 (4%)

Query: 27  QSPR-----LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS-------LSRGNEIE 74
           Q+P+     +E+  ++ QLKQ HA  I   S    TQ +  KII+       L    ++ 
Sbjct: 4   QTPKSVLALIETCTNIQQLKQIHAKSII--SSLSYTQFIITKIINSFLSHACLDYATQVF 61

Query: 75  NLSLQNPQVYLYNFIIQCLSNA-NPLEAIALYREM-LIKGLLPNTYTLPYVLKACWQSQS 132
           N + Q P  ++YN +I+  S++  P  AI++Y +M   + +L + YT P+V KAC    +
Sbjct: 62  NQT-QEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFA 120

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           +  G++VH   ++     + ++ ++L+  Y VCG I    ++F         +D+V W  
Sbjct: 121 VEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFD----EFDAKDVVFWNA 176

Query: 193 LIQAYVKMDYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
           LI  Y +     ++   F +M +   +RP+   ++ ++ AC +  +L LG  IH Y+  +
Sbjct: 177 LITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKD 236

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
              L   V +  ALI++Y+KCG +  ARK+FDE+P KN V WNS+I G    G   E ++
Sbjct: 237 MV-LREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIE 295

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           + R M    LKPD FT+  VL++CA +G   LG WVH + +K  I  D FIG AL+DMYA
Sbjct: 296 LLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYA 354

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           KCG I  A  VF  M  R+V ++ A++ G A HG+A  A+++FSEM + G  PD +TF+ 
Sbjct: 355 KCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLA 414

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           VL AC+H+GLVE G ++F  M + Y + P+ EHYGCMVDL GRAGL++EA +LIK M + 
Sbjct: 415 VLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVE 474

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P+  VWGALL AC IH  +E+ E    ++++      G+Y+++ N+Y+S  R+     +R
Sbjct: 475 PNVVVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVR 534

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + M E+ + K+ GCS++E+    +EF   DK HP++ EIY +LDE+  + K  GY+
Sbjct: 535 EMMVEKGICKSHGCSMIEIGDVVHEFVVADKMHPRSEEIYSVLDELSKKLKMAGYV 590


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/609 (37%), Positives = 357/609 (58%), Gaps = 22/609 (3%)

Query: 7   VASGSR-YNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG-SPQHQTQ----IL 60
           +  G+R Y+D+  F+   LL +  RL   +S+ Q ++ HA I+K+G  P    +     +
Sbjct: 39  ILQGTRVYSDV--FR--GLLQECARL---RSLEQGREVHAAILKSGIQPNRYLENTLLSM 91

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTYT 119
           Y K  SL+    + + S+++  +  +  +I+     N  LEA   Y  M + G  P+  T
Sbjct: 92  YAKCGSLTDARRVFD-SIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVT 150

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
              +L A    + L++GQ+VH   ++  L     V  +L+ +YA CG I     +F   +
Sbjct: 151 FVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFD--R 208

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
            P+  +++V+WT LI  Y +      A+     M QA + P+ +    +L  C+    L 
Sbjct: 209 LPE--KNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALE 266

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G K+HRYI  + +    ++++ N+LI MY KCG +  ARK+F ++P ++VV+W +M+ G
Sbjct: 267 HGKKVHRYIIQSGYG--RELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTG 324

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G   EA+++FRRMQ  G+KPD  T   VL SC++  +L+ GK +H  L     N D
Sbjct: 325 YAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLD 384

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL-AIHGKAWKALDIFSEMS 418
            ++ +ALV MYAKCG +D A  VF  M  R+V ++TA+I G  A HG+  +AL+ F +M 
Sbjct: 385 VYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMK 444

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
           + GI+PD+VTF  VLSAC+H GLVEEG KHF  M   Y ++P  EHY C VDL GRAG +
Sbjct: 445 KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHL 504

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            EA ++I SMP +P   VWGALL AC++H+ VE  E   EN+++ +P+ DGAY+ +++IY
Sbjct: 505 EEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIY 564

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           ++  R+++A K+R+ M++R V K PG S +EV G+ + F   DKSHP++ +IY  L ++ 
Sbjct: 565 AAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLT 624

Query: 599 HQSKNHGYI 607
            Q K  GY+
Sbjct: 625 EQIKEMGYV 633



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 134/416 (32%), Positives = 224/416 (53%), Gaps = 11/416 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ +   M+++G    +     +L+ C + +SL  G++VHA  +K+ +  N Y+ NTL+
Sbjct: 30  EALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 89

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG +    ++F   +     R++VSWT +I+A+V  +   EA   +  M  A  +
Sbjct: 90  SMYAKCGSLTDARRVFDSIR----DRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCK 145

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  V +L+A +    L LG K+H  I +    L P V    +L+ MY KCG+I  AR
Sbjct: 146 PDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRV--GTSLVGMYAKCGDISKAR 203

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +FD +P KNVV+W  +IAG   +GQ   AL++   MQ   + P+  T   +L  C    
Sbjct: 204 VIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPA 263

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            LE GK VH Y+ ++    + ++ N+L+ MY KCG +++A  +F  +  RDV ++TAM+ 
Sbjct: 264 ALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVT 323

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNL 458
           G A  G   +A+++F  M Q GI+PD++TF  VL++CS    ++EG + H   +   YNL
Sbjct: 324 GYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL 383

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL-GACKIHAKVELA 513
               +    +V ++ + G + +A  +   M    +   W A++ G C  H +   A
Sbjct: 384 DVYLQ--SALVSMYAKCGSMDDASLVFNQMS-ERNVVAWTAIITGCCAQHGRCREA 436


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/585 (36%), Positives = 341/585 (58%), Gaps = 48/585 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SLQNPQ 82
           LE  KS+ QLKQ H+  IK G       +  +++I+    +E  N+        ++ +P 
Sbjct: 14  LEKCKSMYQLKQIHSHTIKMGLSS--DPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPS 71

Query: 83  VYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           ++++N +I+  S  ++P   +++Y  ML   + P+ +T P+ LK   +  +L+ G+++  
Sbjct: 72  MFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLN 131

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           +++K    SN++V    + ++++CG++   HK+F          ++V+W  ++  Y ++ 
Sbjct: 132 HAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGD----ACEVVTWNIMLSGYNRVK 187

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
                            +   M+LV  LSACSKL DL  G  I +YI             
Sbjct: 188 ---------------QFKISKMLLV--LSACSKLKDLEWGKHIFKYINGG---------- 220

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
              +  M+  CG +  A+ VFD M  ++VVSW +MI G      F  AL +FR MQ   +
Sbjct: 221 --IVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNV 278

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           KPD+FT+V +L +CA +G LELG+WV T +DKN    D F+GNALVDMY KCG + +A  
Sbjct: 279 KPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKK 338

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF+ M  +D +++T MIVGLAI+G   +AL +FS M +  + PDE+T++GVL AC    +
Sbjct: 339 VFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----M 394

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           V++G   F +M+  + ++P   HYGCMVDL G  G + EAL++I +MP+ P++ VWG+ L
Sbjct: 395 VDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPL 454

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
           GAC++H  V+LA++  + ++  EPE    Y+L+ NIY++  +W+   ++RK M ER +KK
Sbjct: 455 GACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKK 514

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           TPGCSL+E+ G  YEF  GD+SHP++ EIY  L+ +M      GY
Sbjct: 515 TPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGY 559


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/639 (36%), Positives = 365/639 (57%), Gaps = 56/639 (8%)

Query: 16  INTFQQLSLLHQSPRL---ESSKSVGQLKQFHAFIIKTGSPQH---QTQILYDKIISLSR 69
           IN     S + ++P L   E  KS+ QLKQ  A ++ TG  ++    ++++     +LS 
Sbjct: 46  INWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLV--AFCALSE 103

Query: 70  GNEIENLS-----LQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLL-PNTYTLPY 122
             E++  +     ++   V+ +N  I+    +  +E    LY+ ML+ G L P+ +T P 
Sbjct: 104 SKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPL 163

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK C    S  +G  V  + +K     +++V N  + +   CG +   + +F+  +   
Sbjct: 164 LLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSR--- 220

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
             RDLV+W ++I   VK     EAI  + +M    +RP+ + ++ ++S+CS++ DL+LG 
Sbjct: 221 -VRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGK 279

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM----------------- 285
           + H YI ++    +  + + NAL+DMY+KCG + +AR +FD M                 
Sbjct: 280 EFHCYIKEHGLEFT--IPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYAR 337

Query: 286 --------------PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
                         P K+VV WN++I+G     Q KEAL +F  MQ   ++PD  T+V  
Sbjct: 338 FGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNC 397

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L++C+ +G L++G W+H Y++++ ++ D  +G ALVDMYAKCG I +A  VF  +  R+ 
Sbjct: 398 LSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNC 457

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            ++TA+I GLA+HG A  AL  FS+M  +GI PDE+TF+GVLSAC H GLVEEG K+F +
Sbjct: 458 LTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSE 517

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           MS  +N+ P+ +HY CMVDL GRAG + EA +L+K+MP+  DA V GAL  AC+++  V+
Sbjct: 518 MSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQ 577

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           + E     L+  +P+  G Y+L+ ++YS    WKEA   RK M ++ V+KTPGCSLVE+ 
Sbjct: 578 IGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEIN 637

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQ----SKNHGY 606
           G  +EF   D SHP++  IY+ L  +  Q     + HGY
Sbjct: 638 GIVHEFVVRDVSHPQSEWIYECLVTLTKQLDVIVRKHGY 676


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/609 (36%), Positives = 339/609 (55%), Gaps = 48/609 (7%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQT--QILYDKIISLSRGNEIENLS--------LQN 80
           L   +S+  L Q HA ++  G     +    L     +LS G+    L         +  
Sbjct: 17  LRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPE 76

Query: 81  PQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           P  ++YN +++  SN++ P EA+ L+R +L +G+LPN +TLP+VLKAC   +++      
Sbjct: 77  PDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAA 136

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H   +K   +  ++V N L+  +A  G ++   + F       A R++VSW T+I  Y +
Sbjct: 137 HGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFG----EMADRNVVSWNTMIGGYAQ 192

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
               +EA   F +M    L  D   LV +L ACS  G+L +G  +H ++  +   +  D 
Sbjct: 193 AGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRV--DR 250

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVV---------------------------- 291
            + NAL+DMY KCG++  A + FD MP+KNVV                            
Sbjct: 251 ILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPER 310

Query: 292 ---SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
              SWN+MI+     G+  E LD++ RM+ LG+ PD+FTL  VL++C   G L  GK +H
Sbjct: 311 NIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIH 370

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
            Y+  N  +    + N+L+DMYA+CG++D A G+F  M  ++V S+  +I  LA+HG+A 
Sbjct: 371 CYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQ 430

Query: 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCM 468
           + +  F  M      PDE+TFVG+LSACSH GL+E G  +F  M+RVYN++P+ EHYGCM
Sbjct: 431 ETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCM 490

Query: 469 VDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
           VDL GR G + +A++LIK M + PD  VWGALLGAC+IH  VE+ ++V++ L+  E    
Sbjct: 491 VDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITG 550

Query: 529 GAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTL 588
           G ++L+ N++   N+W++  KLRK MKE+  KK  G S +EV    +EF   D  H  T 
Sbjct: 551 GLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIHEFGVEDLRHESTN 610

Query: 589 EIYKLLDEI 597
           EIY  +D++
Sbjct: 611 EIYAAVDQL 619


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 324/523 (61%), Gaps = 19/523 (3%)

Query: 78  LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           LQNP   LYN +I+ LS++  PLEA+ LY  ML  GL P+  T P+V+KAC +S     G
Sbjct: 155 LQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFG 214

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
             VH + +K+    + Y+ ++L+ LYA    + A  +LF+      + RD+VSW  +I  
Sbjct: 215 LLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNL----CSARDVVSWNAMIDG 270

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           YVK            +M  A +  D M+   V+S  + +   ++  KI        F+  
Sbjct: 271 YVK----------HVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDE--AKRLFDEM 318

Query: 257 PD--VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           P+  +   N+++  ++KCGN+  A  +F EMP ++VVSWNSM+A     G+  EAL +F 
Sbjct: 319 PERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFD 378

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           +M+ +G+KP + T+V +L++CA++G L+ G  +HTY++ N I  +  +G ALVDMYAKCG
Sbjct: 379 QMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCG 438

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           +I  A  VF +M+ +DV ++  +I G+AIHG   +A  +F EM + G+EP+++TFV +LS
Sbjct: 439 KISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILS 498

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           ACSHAG+V+EG K    MS  Y ++P+ EHYGC++DL  RAG + EA++LI +MP+ P+ 
Sbjct: 499 ACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNP 558

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
              GALLG C+IH   EL E+V + L+  +P   G YIL++NIY++  +W +A K+R  M
Sbjct: 559 SALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLM 618

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           K   + K PG S++E+ G  + F  GD SHP++ +IY+ L+EI
Sbjct: 619 KVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEI 661


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/548 (37%), Positives = 323/548 (58%), Gaps = 7/548 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K  S+    E+ NL      V     I     +    EA   + +M+  G+ PN  T
Sbjct: 350 MYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVT 409

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
              +L AC +  +L+ G+Q+H   +K   +++  V   L+ +YA CG +     +F    
Sbjct: 410 FMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFE--- 466

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
              +++++V+W  +I AYV+ +    A+ +F  + +  ++PD      +L+ C     L 
Sbjct: 467 -RISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALE 525

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           LG  +   I    F    D+ I NAL+ M++ CG++ SA  +F++MP +++VSWN++IAG
Sbjct: 526 LGKWVQSLIIRAGF--ESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAG 583

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G+ + A D F+ MQ  G+KPD  T   +LN+CA+   L  G+ +H  + +  ++ D
Sbjct: 584 FVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCD 643

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             +G  L+ MY KCG ID A  VF ++  ++VYS+T+MI G A HG+  +AL++F +M Q
Sbjct: 644 VVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQ 703

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G++PD +TFVG LSAC+HAGL++EG  HF  M + +N++P+ EHYGCMVDLFGRAGL+ 
Sbjct: 704 EGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLH 762

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA++ I  M + PD+ +WGALLGAC++H  VELAE V +  +  +P  DG Y++++NIY+
Sbjct: 763 EAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYA 822

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
           +   WKE  K+RK M +R V K PG S +EV G  + F   DK+HP+  EI+  L  +  
Sbjct: 823 AAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHM 882

Query: 600 QSKNHGYI 607
           + K  GY+
Sbjct: 883 EMKKLGYV 890



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 265/496 (53%), Gaps = 23/496 (4%)

Query: 66  SLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVL 124
           S S+G   E + ++N Q    N  +  LS A  L EA+ +   +    +  +  T   +L
Sbjct: 54  SYSKGQGNEFVDIKNTQ--RANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLL 111

Query: 125 KACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ 184
           + C + ++L  G+++H +   + +  +++++N L+ +YA CG   +  ++F         
Sbjct: 112 QLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIF----DEMPD 167

Query: 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI 244
           +D+ SW  L+  YV+     EA      M Q  ++PD    V +L+AC+   ++  G ++
Sbjct: 168 KDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGEL 227

Query: 245 HRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
              I +  ++   D+F+  ALI+M++KCG +  A KVF+ +P +++++W SMI GL    
Sbjct: 228 FSLILNAGWD--TDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHR 285

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
           QFK+A ++F+ M+  G++PD    V +L +C +   LE GK VH  + +  ++T+ ++G 
Sbjct: 286 QFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGT 345

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
           AL+ MY KCG ++ A  VF  +K R+V S+TAMI G A HG+  +A   F++M + GIEP
Sbjct: 346 ALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEP 405

Query: 425 DEVTFVGVLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           + VTF+ +L ACS    +++G +     +    + + + +T     ++ ++ + G + +A
Sbjct: 406 NRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRT----ALLSMYAKCGSLMDA 461

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA-YILMTNIYSS 540
            ++ + +    +   W A++ A   H K + A    + L++   + D + +  + N+  S
Sbjct: 462 RNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKS 520

Query: 541 KN-----RWKEALKLR 551
            +     +W ++L +R
Sbjct: 521 PDALELGKWVQSLIIR 536



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 207/414 (50%), Gaps = 8/414 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA  L+ +M+  G+ P+ YT  Y+L AC  ++++  G ++ +  +     ++++V   L+
Sbjct: 188 EAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALI 247

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            ++  CG +    K+F+       +RDL++WT++I    +     +A   F  M +  ++
Sbjct: 248 NMHIKCGGVDDALKVFN----NLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQ 303

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  V +L AC+    L  G ++H  + +    L  ++++  AL+ MY KCG++  A 
Sbjct: 304 PDKVAFVSLLKACNHPEALEQGKRVHARMKE--VGLDTEIYVGTALLSMYTKCGSMEDAL 361

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +VF+ +  +NVVSW +MIAG    G+ +EA   F +M   G++P+  T + +L +C+   
Sbjct: 362 EVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPS 421

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ G+ +H  + K    TD  +  AL+ MYAKCG +  A  VF  +  ++V ++ AMI 
Sbjct: 422 ALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMIT 481

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
               H K   A+  F  + + GI+PD  TF  +L+ C     +E G K    +      +
Sbjct: 482 AYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFE 540

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
                   +V +F   G +  A++L   MP   D   W  ++     H + + A
Sbjct: 541 SDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHGENQFA 593



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 198/362 (54%), Gaps = 17/362 (4%)

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
           +EA+L    +   +++        +L  C K  +L  G +IH +I  +   + PD+F+ N
Sbjct: 86  SEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFS--KIQPDIFMWN 143

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
            LI MY KCGN  SA+++FDEMP K+V SWN ++ G     +++EA  +  +M   G+KP
Sbjct: 144 MLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKP 203

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D +T V +LN+CA+   ++ G  + + +     +TD F+G AL++M+ KCG +D A  VF
Sbjct: 204 DKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVF 263

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
            ++  RD+ ++T+MI GLA H +  +A ++F  M + G++PD+V FV +L AC+H   +E
Sbjct: 264 NNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALE 323

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD---LIKSMPLVPDAFVWGAL 500
           +G +    M  V  L  +      ++ ++ + G + +AL+   L+K   +V     W A+
Sbjct: 324 QGKRVHARMKEV-GLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVS----WTAM 378

Query: 501 LGACKIHAKVELAEIVMENLVR--FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           +     H ++E A +    ++    EP      +   +I  + +R   ALK  +++ +R 
Sbjct: 379 IAGFAQHGRMEEAFLFFNKMIESGIEPN----RVTFMSILGACSR-PSALKQGRQIHDRI 433

Query: 559 VK 560
           +K
Sbjct: 434 IK 435


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/499 (41%), Positives = 304/499 (60%), Gaps = 4/499 (0%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           L+A++LY +ML  G  PN +T P+ LK+C       +G Q H    K   +   +V   L
Sbjct: 31  LQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGL 90

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y    L+    K+F    H  +++  V +  L+  YV     +EA+L F  M +  +
Sbjct: 91  ISMYCKGSLVDNARKVFEENFH--SRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGV 148

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
             + + L+ ++ AC    +L LG  +H   +   +    DV + N  I MY+KCG++  A
Sbjct: 149 PVNSVTLLGLIPACVSPINLELGSSLH--CSTLKYGFDSDVSVVNCFITMYMKCGSVNYA 206

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           +K+FDEMPVK ++SWN+M++G    G     L+++R M   G+ PD  TLV VL+SCAN+
Sbjct: 207 QKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANL 266

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G   +G  V   +  +   ++ F+ NAL++MYA+CG + +A  VF  M  R + S+TA+I
Sbjct: 267 GAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAII 326

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G  +HG    A+ +F EM + GIEPD   FV VLSACSHAGL ++G ++F  M R Y L
Sbjct: 327 GGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQL 386

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +P  EHY CMVDL GRAG ++EA  LI+SMP+ PD  VWGALLGACKIH  VELAE+  E
Sbjct: 387 EPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFE 446

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            ++  EPE  G Y+L++NIYS+ N  K  L++R  MKE+K+KK PGCS VE+ G  + F 
Sbjct: 447 RVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFI 506

Query: 579 KGDKSHPKTLEIYKLLDEI 597
            GD++H ++ EIY++L+E+
Sbjct: 507 VGDRNHLQSDEIYRVLEEL 525



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 202/402 (50%), Gaps = 17/402 (4%)

Query: 42  QFHAFIIKTG---SPQHQTQI--LYDK--IISLSRGNEIENLSLQNPQVYLYNFIIQCLS 94
           QFH  I K G    P  QT +  +Y K  ++  +R    EN   +   V     +   +S
Sbjct: 70  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVS 129

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N+   EA+ L+R+M  +G+  N+ TL  ++ AC    +L +G  +H  ++K    S+V V
Sbjct: 130 NSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSV 189

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N  + +Y  CG +    KLF         + L+SW  ++  Y +    T  +  + +M 
Sbjct: 190 VNCFITMYMKCGSVNYAQKLF----DEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMD 245

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              + PD + LV VLS+C+ LG  S+G ++   I  + F  +P  F++NALI+MY +CGN
Sbjct: 246 MNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNP--FLNNALINMYARCGN 303

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A+ VFD MP + +VSW ++I G    G  + A+ +F+ M   G++PD    VCVL++
Sbjct: 304 LTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSA 363

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSMKCR-DVY 392
           C++ G  + G      + +N+    G    + +VD+  + GR+ +A  +  SM  + D  
Sbjct: 364 CSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGA 423

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            + A++    IH     A   F  +  + +EP+ + +  +LS
Sbjct: 424 VWGALLGACKIHKNVELAELAFERV--IELEPENIGYYVLLS 463



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 182/379 (48%), Gaps = 10/379 (2%)

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W T ++   K     +A+  +  M +   RP+       L +C+ L    LG + H  IT
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE--MPVKNVVSWNSMIAGLTHRGQFK 307
                  P  F+   LI MY K   + +ARKVF+E     K  V +N++++G     +  
Sbjct: 77  KVGCVFEP--FVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCS 134

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           EA+ +FR+M   G+  +  TL+ ++ +C +   LELG  +H    K   ++D  + N  +
Sbjct: 135 EAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFI 194

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
            MY KCG ++ A  +F  M  + + S+ AM+ G A +G A   L+++  M   G+ PD V
Sbjct: 195 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 254

Query: 428 TFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           T VGVLS+C++ G    G +  F   +  +   P   +   +++++ R G + +A  +  
Sbjct: 255 TLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFD 312

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG-AYILMTNIYSSKNRWK 545
            MP       W A++G   +H   E+A  + + ++R   E DG A++ + +  S      
Sbjct: 313 GMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTD 371

Query: 546 EALKLRKKMKERKVKKTPG 564
           + L+  K MK R  +  PG
Sbjct: 372 QGLEYFKMMK-RNYQLEPG 389


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/614 (35%), Positives = 350/614 (57%), Gaps = 41/614 (6%)

Query: 30  RLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL-----QNPQVY 84
           +L   KS+  +KQ HA I++T         L++  +S S  N    L++       P+  
Sbjct: 18  KLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPESI 77

Query: 85  LYNFIIQCLSNANPLEAIALYREML--IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           ++N  ++ LS ++   A  L+ + +  + G L     LP +LKA  +  +L  G ++H  
Sbjct: 78  VFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLP-ILKAVSKVSALFEGMELHGV 136

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
           + K A L + +V    M +YA CG I     +F    H    RD+V+W T+I+ Y +   
Sbjct: 137 AFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSH----RDVVTWNTMIERYCRFGL 192

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP----- 257
             EA   F +M  +N+ PD MIL  ++SAC + G++     I+ ++ +N   +       
Sbjct: 193 VDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTA 252

Query: 258 ------------------------DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
                                   ++F+  A++  Y KCG +  A+ +FD+   K++V W
Sbjct: 253 LVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCW 312

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
            +MI+        +EAL +F  M   G+KPD  ++  V+++CAN+G L+  KWVH+ +  
Sbjct: 313 TTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHV 372

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
           N + ++  I NAL++MYAKCG +D    VF  M  R+V S+++MI  L++HG+A  AL +
Sbjct: 373 NGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSL 432

Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473
           F+ M Q  +EP+EVTFVGVL  CSH+GLVEEG K F  M+  YN+ P+ EHYGCMVDLFG
Sbjct: 433 FARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFG 492

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
           RA L+REAL++I+SMP+  +  +WG+L+ AC+IH ++EL +   + ++  EP+ DGA +L
Sbjct: 493 RANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVL 552

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
           M+NIY+ + RW++   +R+ M+E+ V K  G S ++  G+ +EF  GDK H ++ EIY  
Sbjct: 553 MSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAK 612

Query: 594 LDEIMHQSKNHGYI 607
           LDE++ + K  GY+
Sbjct: 613 LDEVVSKLKLAGYV 626


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/499 (41%), Positives = 304/499 (60%), Gaps = 4/499 (0%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           L+A++LY +ML  G  PN +T P+ LK+C       +G Q H    K   +   +V   L
Sbjct: 22  LQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGL 81

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y    L+    K+F    H  +++  V +  L+  YV     ++A+L F  M +  +
Sbjct: 82  ISMYCKGSLVDNARKVFEENFH--SRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGV 139

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
             + + L+ ++ AC    +L LG  +H   +   +    DV + N  I MY+KCG++  A
Sbjct: 140 PVNSVTLLGLIPACVSPINLELGSSLH--CSTLKYGFDSDVSVVNCFITMYMKCGSVNYA 197

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           +K+FDEMPVK ++SWN+M++G    G     L+++R M   G+ PD  TLV VL+SCAN+
Sbjct: 198 QKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANL 257

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G   +G  V   +  +   ++ F+ NAL++MYA+CG + +A  VF  M  R + S+TA+I
Sbjct: 258 GAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAII 317

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G  +HG    A+ +F EM + GIEPD   FV VLSACSHAGL ++G ++F  M R Y L
Sbjct: 318 GGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQL 377

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +P  EHY CMVDL GRAG ++EA  LI+SMP+ PD  VWGALLGACKIH  VELAE+  E
Sbjct: 378 EPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFE 437

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            ++  EPE  G Y+L++NIYS+ N  K  L++R  MKE+K+KK PGCS VE+ G  + F 
Sbjct: 438 RVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFI 497

Query: 579 KGDKSHPKTLEIYKLLDEI 597
            GD++H ++ EIY++L+E+
Sbjct: 498 VGDRNHLQSDEIYRVLEEL 516



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 202/402 (50%), Gaps = 17/402 (4%)

Query: 42  QFHAFIIKTG---SPQHQTQI--LYDK--IISLSRGNEIENLSLQNPQVYLYNFIIQCLS 94
           QFH  I K G    P  QT +  +Y K  ++  +R    EN   +   V     +   +S
Sbjct: 61  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVS 120

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N+   +A+ L+R+M  +G+  N+ TL  ++ AC    +L +G  +H  ++K    S+V V
Sbjct: 121 NSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSV 180

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N  + +Y  CG +    KLF         + L+SW  ++  Y +    T  +  + +M 
Sbjct: 181 VNCFITMYMKCGSVNYAQKLF----DEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMD 236

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              + PD + LV VLS+C+ LG  S+G ++   +  + F  +P  F++NALI+MY +CGN
Sbjct: 237 MNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNP--FLNNALINMYARCGN 294

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A+ VFD MP + +VSW ++I G    G  + A+ +F+ M   G++PD    VCVL++
Sbjct: 295 LTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSA 354

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSMKCR-DVY 392
           C++ G  + G      + +N+    G    + +VD+  + GR+ +A  +  SM  + D  
Sbjct: 355 CSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGA 414

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            + A++    IH     A   F  +  + +EP+ + +  +LS
Sbjct: 415 VWGALLGACKIHKNVELAELAFERV--IELEPENIGYYVLLS 454



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 182/379 (48%), Gaps = 10/379 (2%)

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W T ++   K     +A+  +  M +   RP+       L +C+ L    LG + H  IT
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE--MPVKNVVSWNSMIAGLTHRGQFK 307
                  P  F+   LI MY K   + +ARKVF+E     K  V +N++++G     +  
Sbjct: 68  KVGCVFEP--FVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCS 125

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           +A+ +FR+M   G+  +  TL+ ++ +C +   LELG  +H    K   ++D  + N  +
Sbjct: 126 DAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFI 185

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
            MY KCG ++ A  +F  M  + + S+ AM+ G A +G A   L+++  M   G+ PD V
Sbjct: 186 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 245

Query: 428 TFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           T VGVLS+C++ G    G +  F   +  +   P   +   +++++ R G + +A  +  
Sbjct: 246 TLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFD 303

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG-AYILMTNIYSSKNRWK 545
            MP       W A++G   +H   E+A  + + ++R   E DG A++ + +  S      
Sbjct: 304 GMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTD 362

Query: 546 EALKLRKKMKERKVKKTPG 564
           + L+  K MK R  +  PG
Sbjct: 363 QGLEYFKMMK-RNYQLEPG 380


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/571 (36%), Positives = 343/571 (60%), Gaps = 51/571 (8%)

Query: 40  LKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SLQNPQVYLYNFIIQ 91
           +K+ HA ++ +G   H  Q    K+I  S   +  +L         +++P  +L+N +++
Sbjct: 327 VKKLHAHLVVSG--LHNCQYAMSKVIR-SYALQQSDLVFAHKVFEQIESPTTFLWNTLLR 383

Query: 92  CLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
            L+ ++ P +AI  Y++   KG+ P+  T P+VLKAC ++ + + G+Q+H++ +K   L 
Sbjct: 384 GLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLL 443

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           +++V N+L+ LYA CG +     +F         +D+VSW +LI  Y + +   E +L+ 
Sbjct: 444 DIFVSNSLIHLYAACGDLVCARSIFD----EMLVKDVVSWNSLIGGYSQRNRFKE-VLAL 498

Query: 211 FDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID-- 267
           F++ QA  ++ D + +V V+SAC+ LGD S+   + RYI  NH  +  DV++ N LID  
Sbjct: 499 FELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEV--DVYLGNTLIDYY 556

Query: 268 -----------------------------MYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
                                         Y K GN+ SA+K+FD++P K+++SW+SMI 
Sbjct: 557 CRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMIC 616

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
             +    F ++L++FR+MQ   +KPD   +  VL++CA++G L+LGKW+H Y+ +N+I T
Sbjct: 617 AYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKT 676

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           D  + N+L+DM+AKCG + +A  VF  M+ +D  S+ ++I+GLA +G   +AL+IF  M 
Sbjct: 677 DTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSML 736

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             G  P+EVTF+GVL AC++  LV+EG  HF  M  V+NL+PQ +HYGC+V +  RAG +
Sbjct: 737 TEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQL 796

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            +A + I  MPL PD  VW  LLGACK H  V +AE+  + L   +P   G Y+L++NIY
Sbjct: 797 EKAKNFINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIY 856

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           +S +RW +AL +R+ M +  V+K+P CS+V+
Sbjct: 857 ASADRWSDALNVRQWMADTAVRKSPACSVVD 887



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 116/312 (37%), Positives = 195/312 (62%), Gaps = 1/312 (0%)

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           +V   N +I  +   G I  AR +FD+MP +NVVSW  +I G T    + EA+ +FR M 
Sbjct: 5   NVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMM 64

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             G+ P + T++ V+ + +N+G + +G+ +H Y  K  I +D  +GN+L+D+YAK G + 
Sbjct: 65  AGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQ 124

Query: 378 QAFGVFRSM-KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
            +  VF  M   R++ S+T++I G A+HG + +AL++F+EM + GI P+ +TF+ V++AC
Sbjct: 125 NSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINAC 184

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SH GLVE+G   F  M   YN+ P+ +H+GC++D+ GRAG + EA  +I+ +P+  +  V
Sbjct: 185 SHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIV 244

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W  LLG C  + +VE+ +  ++ +   E E  G + +++N+ +   R+ +A + RK + E
Sbjct: 245 WRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDE 304

Query: 557 RKVKKTPGCSLV 568
           RK+ K PG +LV
Sbjct: 305 RKIVKVPGLALV 316



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 110/498 (22%), Positives = 216/498 (43%), Gaps = 81/498 (16%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+AL+R M+  G+ P+  T+  V+ A      + +G+ +H Y +K  ++S+  V N+L+
Sbjct: 55  EAVALFRHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLI 114

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LYA  G ++   K+F        +R+LVSWT++I  +       EA+  F +M +A +R
Sbjct: 115 DLYAKIGSVQNSLKVF---DEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIR 171

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  + V++ACS  G +  G+   + +    +N+ P++     +IDM  + G +  A 
Sbjct: 172 PNRITFLSVINACSHGGLVEQGLAFFKSMV-YEYNIDPEIKHFGCIIDMLGRAGRLCEAE 230

Query: 280 KVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP-DDFTLVC-VLNSCA 336
           ++ + +PV+ NV+ W  ++   +  G+ +      + +  L  +   DF ++  VLN   
Sbjct: 231 QIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELG 290

Query: 337 NIG-----------------------------WLELGKWVHTYLDKNHINTDGFIGNALV 367
                                            +E  K +H +L  + ++   +  + ++
Sbjct: 291 RFSDAEQARKLLDERKIVKVPGLALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVI 350

Query: 368 DMYAKCGRIDQAFG--VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
             YA   + D  F   VF  ++    + +  ++ GLA       A+  + +  + G++PD
Sbjct: 351 RSYA-LQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPD 409

Query: 426 EVTFVGVLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
            +TF  VL AC+     +EG +   H + +  + ++         ++ L+   G +  A 
Sbjct: 410 NMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNS----LIHLYAACGDLVCAR 465

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
            +   M LV D   W +L+G                                   YS +N
Sbjct: 466 SIFDEM-LVKDVVSWNSLIGG----------------------------------YSQRN 490

Query: 543 RWKEALKLRKKMKERKVK 560
           R+KE L L + M+  +V+
Sbjct: 491 RFKEVLALFELMQAEEVQ 508



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 127/233 (54%), Gaps = 8/233 (3%)

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
           + NV  +N ++  +A  G I+    LF   Q P   R++VSWT LI  Y +     EA+ 
Sbjct: 3   MKNVVSWNVVITGFAGWGEIEYARLLFD--QMPC--RNVVSWTGLIDGYTRACLYAEAVA 58

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F  M    + P  + ++ V+ A S LG + +G  +H Y       +  D  + N+LID+
Sbjct: 59  LFRHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKK--GIMSDARVGNSLIDL 116

Query: 269 YLKCGNIPSARKVFDEM-PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           Y K G++ ++ KVFDEM   +N+VSW S+I+G    G   EAL++F  M+  G++P+  T
Sbjct: 117 YAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRIT 176

Query: 328 LVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            + V+N+C++ G +E G  +  + + + +I+ +      ++DM  + GR+ +A
Sbjct: 177 FLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEA 229


>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 554

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/540 (40%), Positives = 321/540 (59%), Gaps = 50/540 (9%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           + +AL+ E+  +GL P+ +TLP VLK+  + + +  G++VH Y++KT L S+ YV N+LM
Sbjct: 13  KVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTGLESDSYVCNSLM 72

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANL 218
            +YA  G ++  HK+F        +RD+VSW  LI +YV      +AI  F  M  ++NL
Sbjct: 73  GMYAALGKMEITHKVFD----EMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNL 128

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           + D   +V  LSACS L +L +G +I+RY+    F +S  V   NAL+DM+ KCG +  A
Sbjct: 129 KADEGTIVSTLSACSVLKNLEIGERIYRYVV-TEFEMS--VRTGNALVDMFCKCGCLDKA 185

Query: 279 RKVFDEM-------------------------------PVKNVVSWNSMIAGLTHRGQFK 307
           R +FD M                               PVK+VV W +M+ G     +F 
Sbjct: 186 RAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFD 245

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           EAL++FR MQ   ++PD+F LV +L  CA  G LE GKW+H Y+ +N +  D  +G ALV
Sbjct: 246 EALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALV 305

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           DMYAKCG I+ A GVF  MK RD  S+T++I GLA +G + +ALD++ EM  VG+  D++
Sbjct: 306 DMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDI 365

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           TFV VL+ACSH G V EG + F  M+  + +QP++EHY C++DL  RAGL+ EA +LI  
Sbjct: 366 TFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEAEELIDK 425

Query: 488 M------PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
           M       LVP   V+ +LL A + +  V++AE V E L + E     A+ L+ ++Y+S 
Sbjct: 426 MHGERDKTLVP---VYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASA 482

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD--KSHPKTLEIYKLLDEIMH 599
           NRW++   +R+KMK+  ++K PGCS +EV G  +EF  G+   SHPK  EI  +L +  H
Sbjct: 483 NRWEDVTNVRRKMKDLGIRKFPGCSSIEVDGVSHEFIVGNDPSSHPKMDEINSMLHQTTH 542



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 160/330 (48%), Gaps = 37/330 (11%)

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
           T+ +  F ++    L PD   L +VL +  +L  +  G K+H Y       L  D ++ N
Sbjct: 12  TKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKT--GLESDSYVCN 69

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLK 322
           +L+ MY   G +    KVFDEMP ++VVSWN +I+     G+F++A+ +F+RM +   LK
Sbjct: 70  SLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLK 129

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            D+ T+V  L++C+ +  LE+G+ ++ Y+           GNALVDM+ KCG +D+A  +
Sbjct: 130 ADEGTIVSTLSACSVLKNLEIGERIYRYV-VTEFEMSVRTGNALVDMFCKCGCLDKARAI 188

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKA-----------------W--------------KAL 411
           F SM+ ++V  +T+M+ G   +G+                  W              +AL
Sbjct: 189 FDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEAL 248

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
           ++F  M    I PD    V +L+ C+  G +E+G K      R   +         +VD+
Sbjct: 249 ELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQG-KWIHGYIRENRVTVDKVVGTALVDM 307

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           + + G I  AL +   M    D   W +L+
Sbjct: 308 YAKCGCIETALGVFYEMK-ERDTASWTSLI 336



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 132/267 (49%), Gaps = 9/267 (3%)

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           M+  L     F + L +F  ++G GL PD+FTL  VL S   +  +  G+ VH Y  K  
Sbjct: 1   MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           + +D ++ N+L+ MYA  G+++    VF  M  RDV S+  +I     HG+   A+ +F 
Sbjct: 61  LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120

Query: 416 EMS-QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            MS +  ++ DE T V  LSACS    +E G + +  +   + +  +T +   +VD+F +
Sbjct: 121 RMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVVTEFEMSVRTGN--ALVDMFCK 178

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA-YIL 533
            G + +A  +  SM    +   W +++     + + + A  + E      P  D   +  
Sbjct: 179 CGCLDKARAIFDSMR-DKNVKCWTSMVSGYVSNGRTDEARELFER----SPVKDVVLWTA 233

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVK 560
           M N Y   NR+ EAL+L + M+  +++
Sbjct: 234 MMNGYVQFNRFDEALELFRCMQTARIR 260


>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 670

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/523 (39%), Positives = 321/523 (61%), Gaps = 11/523 (2%)

Query: 87  NFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           N II      N P  AI +YR ++  G +P+ YT+P VLK+C +   +   +Q+H  ++K
Sbjct: 153 NLIISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVK 212

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
           T L  +++V N+ + +Y++CG      K+F F       RD+VSWT LI  Y+K     +
Sbjct: 213 TDLWCDMFVQNSFVHVYSICGDTVGASKVFDF----MPVRDVVSWTGLISGYMKAGLFND 268

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           A+  F  M   ++ P+    V +L AC KLG L+LG  IH  ++   +    ++ + N L
Sbjct: 269 AVALFLRM---DVAPNAATFVSILGACGKLGCLNLGKGIHGLVSK--YPHGKELVVSNTL 323

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           +DMY+KC ++  A+++FDE+P K++VSW SMI+GL      +E+LD+F  M G G +PD 
Sbjct: 324 MDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDG 383

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
             L  VL++CA++G L+ G+WVH Y+D + I  D  IG +L+DMYAKCG I+ A  +F  
Sbjct: 384 VILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNL 443

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
           +  +++ ++ A I GLAI+G   +AL  F  + + G  P+E+TF+ V SAC H+GLV+EG
Sbjct: 444 LPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEG 503

Query: 446 CKHFLDM-SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
             +F  M S  YNL P  EHYGCMVDL  RA L+ EA++LI  MP+ PD  + GALL A 
Sbjct: 504 RSYFKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAMELINKMPMPPDVQIIGALLSAS 563

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
             +  VEL   +++ +  FE +  G Y+L++N Y++  +W E   +R+ MKE+ + K PG
Sbjct: 564 STYGNVELTPEMLKTVRNFECQESGVYVLLSNWYANNKKWAEVRSVRRLMKEKGISKAPG 623

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            SL+ V G+ ++F  GD +HP++ +I+ LL+ + +Q+   G+I
Sbjct: 624 SSLIRVDGKSHKFVVGDNNHPQSEDIHVLLNILANQTYLEGHI 666


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/576 (37%), Positives = 340/576 (59%), Gaps = 15/576 (2%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL---SLQNPQVYLYNFIIQCLS- 94
            L Q  + +I +G   H T  L D + S ++      L    L  P ++L+N I++  S 
Sbjct: 23  HLNQTTSILITSGLAHH-TFFLSDLLRSATKDLGYTLLLFDRLATPYIFLWNTIVRSFSA 81

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ--QVHAYSMKTALLSNV 152
           ++ P   +  Y  +   G++P+ +T P +LKA      LR     Q +A+ +K  L  + 
Sbjct: 82  SSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKA---FSKLRNENPFQFYAHIVKFGLDFDA 138

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           +V N+L+  +A CG +    +LF       A++D+VSWT LI   ++     EA+  F +
Sbjct: 139 FVQNSLVSAFAHCGYVDCSRRLFI----ETAKKDVVSWTALINGCLRNGRAVEALECFVE 194

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M  + +  D + +V VL A + L D+  G  +H +  ++   +  DV++ +AL+DMY KC
Sbjct: 195 MRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESG-RVIWDVYVGSALVDMYSKC 253

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G    A KVF+EMP +N+VSW ++IAG     ++KEAL +F+ M   G++P+  T+   L
Sbjct: 254 GYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSAL 313

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +CA +G L+ G+W+H Y+D++ +  +  +G ALVDMY+KCG +D+A  VF  +  +DVY
Sbjct: 314 TACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVY 373

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            +TAMI GLA+ G A  +L++FS+M +  ++P+ VTF+GVLSAC+H GLV+EG + F  M
Sbjct: 374 PWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLM 433

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              Y L+P  +HYGCMVDL GRAG + EA+  I+SMP+ P   VWGAL   C IH   EL
Sbjct: 434 ICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFEL 493

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            E +  +L++ +P   G YIL+ N+YS   +W+ A  +R+ MK + V K+P CS +EV G
Sbjct: 494 GEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNG 553

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
             +EF   DKSH +++ +Y +L  +  Q K   Y L
Sbjct: 554 VIHEFIAFDKSHIESINVYMMLGSVTAQLKLATYAL 589


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/611 (36%), Positives = 357/611 (58%), Gaps = 39/611 (6%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQV--YLYNF 88
           L ++ S+ Q+ Q HA  +  G P  QT ++  K+I L   +    +  Q P    + +N 
Sbjct: 6   LRTATSLTQIHQIHAQTLIHGLPL-QTHLI-PKLIDLHSIDYARFVLDQTPSPTDFSWNS 63

Query: 89  IIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           +I+  + + +P  ++ LY +ML     P+ +T P+VLKAC    S+  G+Q+H + ++  
Sbjct: 64  LIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLG 123

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFH-----------------------------FR 178
             S+++V N+L+ +Y  C  + +    +                              F 
Sbjct: 124 FGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFE 183

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA--NLRPDGMILVIVLSACSKLG 236
           + P  +R++V WT +I  Y K     E +  F  M  +   ++P+   +V +LSACS L 
Sbjct: 184 EMPM-RRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLC 242

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           +  +G  +  +I  N   L  +  +  ALIDMY KCG++  A ++FD +  KN+ SWN++
Sbjct: 243 NYEVGRFLSVFIDVNKIPL--NTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAI 300

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           I G    G  +EA+D++R M+   +KP++ TLV VL++CA +G LELG+ VH YL +N +
Sbjct: 301 ITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGL 360

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
           + +  +  ALVDMYAKCG+ID A  +F     +DV  + AMI+GLA HG    +L +FS+
Sbjct: 361 DLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQ 420

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M + G++P++VTF+GVLSAC+H+GLVEEG   F  M+  + L P+ EHY CMVDL GRAG
Sbjct: 421 MVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAG 480

Query: 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536
            ++EA +L+++M + PD+ +WGALL AC+IH  +ELA+ + E ++  +    G  IL++N
Sbjct: 481 HLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILLSN 540

Query: 537 IYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDE 596
           IY+S  RWK+  ++R+++KE+++KK  GCS VEV G  + F   D +H K+ EIY   + 
Sbjct: 541 IYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEIYGAYEI 600

Query: 597 IMHQSKNHGYI 607
           +++  K  GY+
Sbjct: 601 LVNHLKAEGYV 611


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/497 (40%), Positives = 308/497 (61%), Gaps = 9/497 (1%)

Query: 113 LLPNT--YTLPYVLKACWQ-SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK 169
           LLPN    T+P  LK+  +    LR G+Q+HA S+K    +N +V  +L+ LYA CGL+ 
Sbjct: 64  LLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLH 123

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
              ++F    HP      V WT LI AY+      EA+    +     +RPD    V VL
Sbjct: 124 RAQRVFDEMPHPST----VPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL 179

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           +AC+++ DL+ G  + R        ++  VF+  A +D+Y+KCG +  AR+VFD+M  K+
Sbjct: 180 TACARIADLATGETVWRAAEQE--GVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKD 237

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
            V+W +M+ G    G  +EALD+F  MQ  G+KPD + +   L++C  +G L+LG+    
Sbjct: 238 AVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIR 297

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
            +D +    +  +G AL+DMYAKCG   +A+ VF+ M+ +D+  + AMI+GL + G    
Sbjct: 298 MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 357

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           A  +  +M + G++ ++ TF+G+L +C+H GL+++G ++F +M+++Y++ P+ EHYGCMV
Sbjct: 358 AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMV 417

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL  RAGL++EA  L+  MP+  +A + GALLG CKIH   ELAE V++ L+  EP   G
Sbjct: 418 DLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSG 477

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y++++NIYS++ RW++A KLR  MK + V+K P CS VE  G+ +EFR GDKSHP + +
Sbjct: 478 NYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQ 537

Query: 590 IYKLLDEIMHQSKNHGY 606
           IYK LDE+  + K  GY
Sbjct: 538 IYKKLDELGLEMKTMGY 554



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 205/437 (46%), Gaps = 20/437 (4%)

Query: 25  LHQSPRLESSKSVGQLKQFHAFIIKTGS---PQHQTQIL--YDKIISLSRGNEIENLSLQ 79
           L  + RL      G+  Q HA  +K  S   P   T +L  Y K   L R   + +  + 
Sbjct: 77  LKSASRLPHPLRAGE--QLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFD-EMP 133

Query: 80  NPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +P    +  +I    +A  L EA+ + R     G+ P+++T   VL AC +   L  G+ 
Sbjct: 134 HPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGET 193

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           V   + +  +  +V+V    + LY  CG +    ++F   +H    +D V+W  ++  Y 
Sbjct: 194 VWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRH----KDAVAWGAMVGGYA 249

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
              +P EA+  F  M    ++PD   +   LSAC++LG L LG +  R +  + F  +P 
Sbjct: 250 SNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNP- 308

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             +  ALIDMY KCG+   A  VF +M  K+++ WN+MI GL   G  K A  +  +M+ 
Sbjct: 309 -VLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEK 367

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
            G+K +D T + +L SC + G ++ G ++ H      HI+        +VD+ ++ G + 
Sbjct: 368 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQ 427

Query: 378 QAFGVFRSMKC-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSA 435
           +A  +   M    +     A++ G  IH     A  +  ++  + +EP +   +V + + 
Sbjct: 428 EAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQL--ILLEPWNSGNYVMLSNI 485

Query: 436 CSHAGLVEEGCKHFLDM 452
            S+ G  E+  K  LDM
Sbjct: 486 YSNRGRWEDAAKLRLDM 502


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/551 (36%), Positives = 323/551 (58%), Gaps = 38/551 (6%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ-----VHAYSMKTA 147
           +S     EA+A Y  ML  G  P+ YT P +LKA   ++   V        +HA+ +K  
Sbjct: 27  VSGHGAEEAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFG 86

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
           + SN +  ++L+ +YA  G   A   +             V W  LI  + +      + 
Sbjct: 87  MESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSC 146

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
            SF DM +A+     +  V VLSAC K  DL LG+++H+ + ++   + PD  + NAL+D
Sbjct: 147 CSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLES--GVLPDQRVENALVD 204

Query: 268 MYLKCGNIPSA-------------------------------RKVFDEMPVKNVVSWNSM 296
           MY +CG++ +A                               R +FD MP ++ ++W +M
Sbjct: 205 MYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAM 264

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           I G    G+F++AL+ FR MQ   ++ D+FT+V V+ +CA +G LE G+W   Y+ +  I
Sbjct: 265 IDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGI 324

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
             D F+GNAL+DMY+KCG I++A  VF+ M  RD +++TA+I+GLA++G+  +A+D+F  
Sbjct: 325 KMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYR 384

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M +    PDEVTFVGVL+AC+HAGLV++G + FL M+  YN+ P   HYGC++D+ GRAG
Sbjct: 385 MLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAG 444

Query: 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536
            ++EALD I  MP+ P++ +WG LL +C+++   E+ E+  E L+  +P+   AYIL++N
Sbjct: 445 KLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSN 504

Query: 537 IYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDE 596
           +Y+  NRWK+  ++R+ + E+ +KK PGCS++E+ G  +EF   D+SHP   EIY  L+ 
Sbjct: 505 MYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKEIYSKLEN 564

Query: 597 IMHQSKNHGYI 607
           ++   +N GY+
Sbjct: 565 VLTDLRNAGYV 575



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 158/331 (47%), Gaps = 31/331 (9%)

Query: 85  LYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           ++N +I   + +   E +   + +M+    +    T   VL AC + + L +G QVH   
Sbjct: 128 MWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRV 187

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ--------------------- 182
           +++ +L +  V N L+ +YA CG + A   LF   Q                        
Sbjct: 188 LESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRAR 247

Query: 183 ------AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
                  +RD ++WT +I  YV++    +A+ +F  M    +R D   +V V++AC++LG
Sbjct: 248 DLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLG 307

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
            L  G     Y+      +  DVF+ NALIDMY KCG+I  A  VF +M  ++  +W ++
Sbjct: 308 ALETGEWARIYM--GRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAI 365

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK-WVHTYLDKNH 355
           I GL   G+ +EA+D+F RM      PD+ T V VL +C + G ++ G+ +  +  +  +
Sbjct: 366 ILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYN 425

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           I+        L+D+  + G++ +A      M
Sbjct: 426 ISPTVVHYGCLIDVLGRAGKLKEALDTIDKM 456


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/497 (40%), Positives = 308/497 (61%), Gaps = 9/497 (1%)

Query: 113  LLPNT--YTLPYVLKACWQ-SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK 169
            LLPN    T+P  LK+  +    LR G+Q+HA S+K    +N +V  +L+ LYA CGL+ 
Sbjct: 519  LLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLH 578

Query: 170  AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
               ++F    HP      V WT LI AY+      EA+    +     +RPD    V VL
Sbjct: 579  RAQRVFDEMPHPST----VPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL 634

Query: 230  SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
            +AC+++ DL+ G  + R        ++  VF+  A +D+Y+KCG +  AR+VFD+M  K+
Sbjct: 635  TACARIADLATGETVWRAAEQE--GVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKD 692

Query: 290  VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
             V+W +M+ G    G  +EALD+F  MQ  G+KPD + +   L++C  +G L+LG+    
Sbjct: 693  AVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIR 752

Query: 350  YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
             +D +    +  +G AL+DMYAKCG   +A+ VF+ M+ +D+  + AMI+GL + G    
Sbjct: 753  MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 812

Query: 410  ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
            A  +  +M + G++ ++ TF+G+L +C+H GL+++G ++F +M+++Y++ P+ EHYGCMV
Sbjct: 813  AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMV 872

Query: 470  DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
            DL  RAGL++EA  L+  MP+  +A + GALLG CKIH   ELAE V++ L+  EP   G
Sbjct: 873  DLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSG 932

Query: 530  AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
             Y++++NIYS++ RW++A KLR  MK + V+K P CS VE  G+ +EFR GDKSHP + +
Sbjct: 933  NYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQ 992

Query: 590  IYKLLDEIMHQSKNHGY 606
            IYK LDE+  + K  GY
Sbjct: 993  IYKKLDELGLEMKTMGY 1009



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 205/437 (46%), Gaps = 20/437 (4%)

Query: 25  LHQSPRLESSKSVGQLKQFHAFIIKTGS---PQHQTQIL--YDKIISLSRGNEIENLSLQ 79
           L  + RL      G+  Q HA  +K  S   P   T +L  Y K   L R   + +  + 
Sbjct: 532 LKSASRLPHPLRAGE--QLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFD-EMP 588

Query: 80  NPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +P    +  +I    +A  L EA+ + R     G+ P+++T   VL AC +   L  G+ 
Sbjct: 589 HPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGET 648

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           V   + +  +  +V+V    + LY  CG +    ++F   +H    +D V+W  ++  Y 
Sbjct: 649 VWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRH----KDAVAWGAMVGGYA 704

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
              +P EA+  F  M    ++PD   +   LSAC++LG L LG +  R +  + F  +P 
Sbjct: 705 SNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNP- 763

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             +  ALIDMY KCG+   A  VF +M  K+++ WN+MI GL   G  K A  +  +M+ 
Sbjct: 764 -VLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEK 822

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
            G+K +D T + +L SC + G ++ G ++ H      HI+        +VD+ ++ G + 
Sbjct: 823 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQ 882

Query: 378 QAFGVFRSMKC-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSA 435
           +A  +   M    +     A++ G  IH     A  +  ++  + +EP +   +V + + 
Sbjct: 883 EAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQL--ILLEPWNSGNYVMLSNI 940

Query: 436 CSHAGLVEEGCKHFLDM 452
            S+ G  E+  K  LDM
Sbjct: 941 YSNRGRWEDAAKLRLDM 957


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/497 (40%), Positives = 308/497 (61%), Gaps = 9/497 (1%)

Query: 113  LLPNT--YTLPYVLKACWQ-SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK 169
            LLPN    T+P  LK+  +    LR G+Q+HA S+K    +N +V  +L+ LYA CGL+ 
Sbjct: 543  LLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLH 602

Query: 170  AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
               ++F    HP      V WT LI AY+      EA+    +     +RPD    V VL
Sbjct: 603  RAQRVFDEMPHPST----VPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL 658

Query: 230  SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
            +AC+++ DL+ G  + R        ++  VF+  A +D+Y+KCG +  AR+VFD+M  K+
Sbjct: 659  TACARIADLATGETVWRAAEQE--GVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKD 716

Query: 290  VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
             V+W +M+ G    G  +EALD+F  MQ  G+KPD + +   L++C  +G L+LG+    
Sbjct: 717  AVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIR 776

Query: 350  YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
             +D +    +  +G AL+DMYAKCG   +A+ VF+ M+ +D+  + AMI+GL + G    
Sbjct: 777  MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 836

Query: 410  ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
            A  +  +M + G++ ++ TF+G+L +C+H GL+++G ++F +M+++Y++ P+ EHYGCMV
Sbjct: 837  AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMV 896

Query: 470  DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
            DL  RAGL++EA  L+  MP+  +A + GALLG CKIH   ELAE V++ L+  EP   G
Sbjct: 897  DLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSG 956

Query: 530  AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
             Y++++NIYS++ RW++A KLR  MK + V+K P CS VE  G+ +EFR GDKSHP + +
Sbjct: 957  NYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQ 1016

Query: 590  IYKLLDEIMHQSKNHGY 606
            IYK LDE+  + K  GY
Sbjct: 1017 IYKKLDELGLEMKTMGY 1033



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 205/437 (46%), Gaps = 20/437 (4%)

Query: 25  LHQSPRLESSKSVGQLKQFHAFIIKTGS---PQHQTQIL--YDKIISLSRGNEIENLSLQ 79
           L  + RL      G+  Q HA  +K  S   P   T +L  Y K   L R   + +  + 
Sbjct: 556 LKSASRLPHPLRAGE--QLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFD-EMP 612

Query: 80  NPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +P    +  +I    +A  L EA+ + R     G+ P+++T   VL AC +   L  G+ 
Sbjct: 613 HPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGET 672

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           V   + +  +  +V+V    + LY  CG +    ++F   +H    +D V+W  ++  Y 
Sbjct: 673 VWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRH----KDAVAWGAMVGGYA 728

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
              +P EA+  F  M    ++PD   +   LSAC++LG L LG +  R +  + F  +P 
Sbjct: 729 SNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNP- 787

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             +  ALIDMY KCG+   A  VF +M  K+++ WN+MI GL   G  K A  +  +M+ 
Sbjct: 788 -VLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEK 846

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
            G+K +D T + +L SC + G ++ G ++ H      HI+        +VD+ ++ G + 
Sbjct: 847 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQ 906

Query: 378 QAFGVFRSMKC-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSA 435
           +A  +   M    +     A++ G  IH     A  +  ++  + +EP +   +V + + 
Sbjct: 907 EAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQL--ILLEPWNSGNYVMLSNI 964

Query: 436 CSHAGLVEEGCKHFLDM 452
            S+ G  E+  K  LDM
Sbjct: 965 YSNRGRWEDAAKLRLDM 981


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/531 (39%), Positives = 314/531 (59%), Gaps = 7/531 (1%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           L N  +  +N +I  L+     E A  +Y +M  +G++PN  T   +L AC  S +L  G
Sbjct: 288 LVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWG 347

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +++H+   K    S++ V N L+ +Y+ CG IK    +F        ++D++SWT +I  
Sbjct: 348 KEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFD----KMVRKDVISWTAMIGG 403

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
             K  +  EA+  + +M QA + P+ +    +L+ACS    L  G +IH+ + +    L+
Sbjct: 404 LAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEA--GLA 461

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D  + N L++MY  CG++  AR+VFD M  +++V++N+MI G       KEAL +F R+
Sbjct: 462 TDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRL 521

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           Q  GLKPD  T + +LN+CAN G LE  + +HT + K    +D  +GNALV  YAKCG  
Sbjct: 522 QEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSF 581

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
             A  VF  M  R+V S+ A+I G A HG+   AL +F  M   G++PD VTFV +LSAC
Sbjct: 582 SDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSAC 641

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SHAGL+EEG ++F  MS+ + + P  EHYGCMVDL GRAG + EA  LIK+MP   +  +
Sbjct: 642 SHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRI 701

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           WGALLGAC+IH  V +AE   E+ ++ + +    Y+ ++++Y++   W  A KLRK M++
Sbjct: 702 WGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQ 761

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R V K PG S ++V  + + F   D+SHP++ +IY  LD + H  K  GY+
Sbjct: 762 RGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYV 812



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 165/564 (29%), Positives = 271/564 (48%), Gaps = 55/564 (9%)

Query: 41  KQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLS 94
           +Q H  II+  +   Q  +     +Y +  S+    ++ + LS     V+ +N ++    
Sbjct: 43  RQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYI 102

Query: 95  NANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
               +E A+ L R+M   GL P+  T+   L +C    +L  G+++H  +M+  LL +V 
Sbjct: 103 QYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVK 162

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V N ++ +YA CG I+   ++F        ++ +VSWT  I  Y        A   F  M
Sbjct: 163 VANCILNMYAKCGSIEEAREVFD----KMEKKSVVSWTITIGGYADCGRSETAFEIFQKM 218

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKC 272
            Q  + P+ +  + VL+A S    L  G  +H R +   H     D  +  AL+ MY KC
Sbjct: 219 EQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGH---ESDTAVGTALVKMYAKC 275

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G+    R+VF+++  +++++WN+MI GL   G ++EA +++ +MQ  G+ P+  T V +L
Sbjct: 276 GSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILL 335

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           N+C N   L  GK +H+ + K    +D  + NAL+ MY++CG I  A  VF  M  +DV 
Sbjct: 336 NACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVI 395

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGL 441
           S+TAMI GLA  G   +AL ++ EM Q G+EP+ VT+  +L+ACS           H  +
Sbjct: 396 SWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQV 455

Query: 442 VEEG-----------------CKHFLDMSRVYN--LQPQTEHYGCMVDLFGRAGLIREAL 482
           VE G                 C    D  +V++  +Q     Y  M+  +    L +EAL
Sbjct: 456 VEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEAL 515

Query: 483 ---DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR----FEPEGDGAYILMT 535
              D ++   L PD   +  +L AC     +E A  +   LVR    F     G  ++ T
Sbjct: 516 KLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREI-HTLVRKGGFFSDTSVGNALVST 574

Query: 536 NIYSSKNRWKEALKLRKKMKERKV 559
             Y+    + +A  + +KM +R V
Sbjct: 575 --YAKCGSFSDASIVFEKMTKRNV 596



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/484 (27%), Positives = 237/484 (48%), Gaps = 40/484 (8%)

Query: 111 KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170
           +G   N+     +LK C + + L  G+QVH + ++   + + Y  N L+ +Y  CG I+ 
Sbjct: 17  QGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEE 76

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
             ++  +++    +R + SW  ++  Y++  Y  +A+     M Q  L PD   ++  LS
Sbjct: 77  ARQV--WKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLS 134

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           +C   G L  G +IH         L  DV + N +++MY KCG+I  AR+VFD+M  K+V
Sbjct: 135 SCKSPGALEWGREIH--FQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSV 192

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           VSW   I G    G+ + A +IF++M+  G+ P+  T + VLN+ ++   L+ GK VH+ 
Sbjct: 193 VSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSR 252

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           +      +D  +G ALV MYAKCG       VF  +  RD+ ++  MI GLA  G   +A
Sbjct: 253 ILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEA 312

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------------------------- 445
            +++++M + G+ P+++T+V +L+AC ++  +  G                         
Sbjct: 313 SEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISM 372

Query: 446 ---CKHFLDMSRVYN--LQPQTEHYGCMVDLFGRAGLIREALDLIKSMP---LVPDAFVW 497
              C    D   V++  ++     +  M+    ++G   EAL + + M    + P+   +
Sbjct: 373 YSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTY 432

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI--LMTNIYSSKNRWKEALKLRKKMK 555
            ++L AC   A +E    + + +V      D A++   + N+YS     K+A ++  +M 
Sbjct: 433 TSILNACSSPAALEWGRRIHQQVVEAGLATD-AHVGNTLVNMYSMCGSVKDARQVFDRMI 491

Query: 556 ERKV 559
           +R +
Sbjct: 492 QRDI 495



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 133/279 (47%), Gaps = 15/279 (5%)

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A+D+ + +Q  G + +    + +L  C  +  L  G+ VH ++ ++    D +  NAL++
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 369 MYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           MY +CG I++A  V++ +    R V+S+ AM+VG   +G   KAL +  +M Q G+ PD 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 427 VTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
            T +  LS+C   G +E G + HF  M     L    +   C+++++ + G I EA ++ 
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQA--GLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG----DGAYILMTNIYSSK 541
             M        W   +G    +A    +E   E   + E EG       YI + N +SS 
Sbjct: 185 DKMEK-KSVVSWTITIGG---YADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSP 240

Query: 542 N--RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
              +W +A+  R      +     G +LV++Y +   ++
Sbjct: 241 AALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYK 279


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/605 (36%), Positives = 341/605 (56%), Gaps = 51/605 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS---------LSRGNEIENLSLQNP 81
           +ES  ++ QLKQ  A +  TG   H   +   ++I+         L   + I N  ++ P
Sbjct: 164 MESCSTMRQLKQIQARMTLTGIITHAFPV--SRVIAFCALAHSGDLHYAHTIFN-RVEQP 220

Query: 82  QVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
             +++N +I+   NA  P+ A + +  M    +  ++ +  + LKAC Q +++  G+ V+
Sbjct: 221 NTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVY 280

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
               K      + V N L+  YA  GL+K   ++F       + +D+V+WTT+I  Y   
Sbjct: 281 CVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFD----ESSDKDVVTWTTMIDGYAAH 336

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           D   EA+  F  M  +++ P+ + L+ V+SACS +G+L +G ++H  + +   N+   + 
Sbjct: 337 DCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEK--NMRCSLS 394

Query: 261 IHNALIDMYLKC-------------------------------GNIPSARKVFDEMPVKN 289
           +HNAL+DMY+KC                               G++ SAR+ FD+ P KN
Sbjct: 395 LHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKN 454

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
            V W++MIAG +   + KE+L +F  M   G+ P + TLV VL++C  +  L LG W+H 
Sbjct: 455 AVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQ 514

Query: 350 YLDKNHI-NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
           Y     I      + NA+VDMYAKCG ID A  VF +M  R++ S+  MI G A +G+A 
Sbjct: 515 YFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAK 574

Query: 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCM 468
           +A+++F +M  +G EP+ +TFV +L+ACSH GL+ EG ++F +M R Y ++P+  HY CM
Sbjct: 575 QAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACM 634

Query: 469 VDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
           VDL GR GL+ EA  LI +MP+ P    WGALL AC++H  VELA +   NL+R +PE  
Sbjct: 635 VDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDS 694

Query: 529 GAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTL 588
           G Y+L+ N  ++  +W +  ++R  MK++ VKK PG SL+E+ G F EF   D+SHP++ 
Sbjct: 695 GIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADESHPQSE 754

Query: 589 EIYKL 593
           EIYKL
Sbjct: 755 EIYKL 759


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/593 (36%), Positives = 340/593 (57%), Gaps = 71/593 (11%)

Query: 81  PQVYLYNFIIQCLSNA--NPLEAIALYREMLIKGLLPNTYTLPYVLKACW---QSQSLRV 135
           P  +L++  ++  S A  +P     L+R M   G+ P+ +T  ++ K      +  SL +
Sbjct: 65  PSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLL 124

Query: 136 GQQVHAYSMKTALLSNV-YVFNTLMRLYAVCGLIKAVHKLFH------------------ 176
              +HA  ++T L S   +V N+L+ +Y   GL     + F                   
Sbjct: 125 CTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLA 184

Query: 177 -----------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
                        Q P   RD++SWT+LI AY + +   EA+  F  M    + PD + +
Sbjct: 185 KMGMLCDTQLLLSQAPV--RDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTV 242

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN----------- 274
           + VLSAC+KL DL LG  +H  + +     S ++ +  ALIDMY KCG+           
Sbjct: 243 IAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVV--ALIDMYAKCGDFGHAQQVFDAL 300

Query: 275 ---------------------IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
                                +  AR +FDEM V++++++NSM+ G  H GQ +EAL +F
Sbjct: 301 GRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLF 360

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             M+   L+ D+FT+V +L +CA++G L+ G+ +H  +++  +  D ++G AL+DMY KC
Sbjct: 361 MSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKC 420

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           GR+D+A  VF+ M  RDV+++TAMI GLA +G    AL+ F +M   G +P+ V+++ VL
Sbjct: 421 GRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVL 480

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           +ACSH+ L+ EG  +F +M  +YN+ PQ EHYGCM+DL GR+GL+ EA+DL+K+MP+ P+
Sbjct: 481 TACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPN 540

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
           A +W ++L AC++H  ++LA+   E+L++ EP+ DG Y+ + NIY    +W+ A K+R  
Sbjct: 541 AVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRML 600

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           M+ER+VKKT G S + V G+ ++F   DKSHP+ LEI  +L+EI H+ K+ GY
Sbjct: 601 MEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGY 653



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 143/358 (39%), Gaps = 52/358 (14%)

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCG-----NIPSARKVFDEMPVKNVVSWNSMIAGL 300
           R  T  H  L P    H  L++  + C      ++  A  +FD MP    +   ++ A  
Sbjct: 21  RLTTSGHLLLHPPSARH--LLNSLVNCLEPHPLHLRYALHLFDRMPPSTFLFDTALRACS 78

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFT---LVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
                      +FRRM+  G++PD FT   L    +S +    L L   +H    +  + 
Sbjct: 79  RAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLP 138

Query: 358 TDG-FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG----------- 405
           +   F+ N+L+ MY + G    A   F  +  +D  ++T +I GLA  G           
Sbjct: 139 SAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQ 198

Query: 406 --------------------KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
                               +A +A+  F  M   GI PDEVT + VLSAC+    +E G
Sbjct: 199 APVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELG 258

Query: 446 CK-HFLDMSRVYNLQPQTEHY-GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL-G 502
              H L   +     P +E+    ++D++ + G    A  +  ++   P    W A++ G
Sbjct: 259 RSLHLLVEEKG---MPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDG 315

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
            CK H  V++A  + + +   E      +  M   Y    + +EAL L   M+   ++
Sbjct: 316 YCK-HGHVDVARSLFDEM---EVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLR 369


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/593 (36%), Positives = 340/593 (57%), Gaps = 71/593 (11%)

Query: 81  PQVYLYNFIIQCLSNA--NPLEAIALYREMLIKGLLPNTYTLPYVLKACW---QSQSLRV 135
           P  +L++  ++  S A  +P     L+R M   G+ P+ +T  ++ K      +  SL +
Sbjct: 65  PSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLL 124

Query: 136 GQQVHAYSMKTALLSNV-YVFNTLMRLYAVCGLIKAVHKLFH------------------ 176
              +HA  ++T L S   +V N+L+ +Y   GL     + F                   
Sbjct: 125 CTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLA 184

Query: 177 -----------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
                        Q P   RD++SWT+LI AY + +   EA+  F  M    + PD + +
Sbjct: 185 KMGMLCDTQLLLSQAPV--RDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTV 242

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN----------- 274
           + VLSAC+KL DL LG  +H  + +     S ++ +  ALIDMY KCG+           
Sbjct: 243 IAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVV--ALIDMYAKCGDFGHAQQVFDAL 300

Query: 275 ---------------------IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
                                +  AR +FDEM V++++++NSM+ G  H GQ +EAL +F
Sbjct: 301 GRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLF 360

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             M+   L+ D+FT+V +L +CA++G L+ G+ +H  +++  +  D ++G AL+DMY KC
Sbjct: 361 MSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKC 420

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           GR+D+A  VF+ M  RDV+++TAMI GLA +G    AL+ F +M   G +P+ V+++ VL
Sbjct: 421 GRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVL 480

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           +ACSH+ L+ EG  +F +M  +YN+ PQ EHYGCM+DL GR+GL+ EA+DL+K+MP+ P+
Sbjct: 481 TACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPN 540

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
           A +W ++L AC++H  ++LA+   E+L++ EP+ DG Y+ + NIY    +W+ A K+R  
Sbjct: 541 AVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRML 600

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           M+ER+VKKT G S + V G+ ++F   DKSHP+ LEI  +L+EI H+ K+ GY
Sbjct: 601 MEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGY 653



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 143/359 (39%), Gaps = 54/359 (15%)

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCG-----NIPSARKVFDEMPVKNVVSWNSMIAGL 300
           R  T  H  L P    H  L++  + C      ++  A  +FD MP    +   ++ A  
Sbjct: 21  RLTTSGHLLLHPPSARH--LLNSLVNCLEPHPLHLRYALHLFDRMPPSTFLFDTALRACS 78

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW----LELGKWVHTYLDKNHI 356
                      +FRRM+  G++PD FT    L  C++       L L   +H    +  +
Sbjct: 79  RAGSDPHRPFLLFRRMRRAGVRPDGFTFH-FLFKCSSSSSRPHSLLLCTMLHAACLRTML 137

Query: 357 NTDG-FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG---------- 405
            +   F+ N+L+ MY + G    A   F  +  +D  ++T +I GLA  G          
Sbjct: 138 PSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLS 197

Query: 406 ---------------------KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
                                +A +A+  F  M   GI PDEVT + VLSAC+    +E 
Sbjct: 198 QAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLEL 257

Query: 445 GCK-HFLDMSRVYNLQPQTEH-YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL- 501
           G   H L   +     P +E+    ++D++ + G    A  +  ++   P    W A++ 
Sbjct: 258 GRSLHLLVEEKG---MPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIID 314

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           G CK H  V++A  + + +   E      +  M   Y    + +EAL L   M+   ++
Sbjct: 315 GYCK-HGHVDVARSLFDEM---EVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLR 369


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/523 (37%), Positives = 312/523 (59%), Gaps = 7/523 (1%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N II   S N    +A+ L   M  +G  P++ TL  VL A      L VG+ +H Y++
Sbjct: 216 WNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAI 275

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           +      V +   L  +Y+ CG ++    +F        Q+ +VSW +++  YV+   P 
Sbjct: 276 RAGFAKLVNISTALADMYSKCGSVETARLIFD----GMDQKTVVSWNSMMDGYVQNGEPE 331

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           +AI  F  M +  + P G+ ++  L AC+ LGDL  G  +H+++  +  NL  D+ + N+
Sbjct: 332 KAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFV--DQLNLGSDISVMNS 389

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LI MY KC  +  A  +F+ +  +  VSWN+MI G    G+  EAL+ F  M+ LG+KPD
Sbjct: 390 LISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPD 449

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
            FT+V V+ + A +      KW+H  + ++ ++ + F+  ALVDMY+KCG I  A  +F 
Sbjct: 450 SFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD 509

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            +  R V ++ AMI G   HG    ALD+F +M +  +EP+++T++ V+SACSH+GLV+E
Sbjct: 510 MISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDE 569

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G +HF  M + Y L+P  +HYG MVDL GRAG I+EA D I++MP+ P   V+GA+LGAC
Sbjct: 570 GLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGAC 629

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           KIH  +E+ E   + L    P+  G ++L+ NIY+S ++W +  ++RK M+++ +KKTPG
Sbjct: 630 KIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPG 689

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           CS+VE+  E + F  G  +HP++  IY  L+E++++ K  GY+
Sbjct: 690 CSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYV 732



 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 174/585 (29%), Positives = 288/585 (49%), Gaps = 60/585 (10%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENLS-----LQNPQVY 84
           LE   S+ +L Q    +IK G   +   +   K++SL S+   I   +     + +    
Sbjct: 56  LELCTSMKELHQIIPLVIKNG--LYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDA 113

Query: 85  LYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           LY+ +++  +  + LE A+A    M    + P  Y   Y+LK C  +  L+ G+++H   
Sbjct: 114 LYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQL 173

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +  +  +NV+    ++ +YA C  I   +K+F        +RDLVSW T+I  + +  + 
Sbjct: 174 ITNSFAANVFAMTGVVNMYAKCRQIDDAYKMF----DRMPERDLVSWNTIIAGFSQNGFA 229

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            +A+     M     RPD + LV VL A + +G L +G  IH Y     F  +  V I  
Sbjct: 230 KKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGF--AKLVNIST 287

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL DMY KCG++ +AR +FD M  K VVSWNSM+ G    G+ ++A+ +F +M   G+ P
Sbjct: 288 ALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDP 347

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
              T++  L++CA++G LE GK+VH ++D+ ++ +D  + N+L+ MY+KC R+D A  +F
Sbjct: 348 TGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIF 407

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV------LSACS 437
            ++  R   S+ AMI+G A +G+  +AL+ FSEM  +G++PD  T V V      LS   
Sbjct: 408 NNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTR 467

Query: 438 HA----GLVEEGC--------KHFLDM----------SRVYNLQPQTE--HYGCMVDLFG 473
           HA    GL+   C           +DM           +++++        +  M+D +G
Sbjct: 468 HAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYG 527

Query: 474 RAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVR---FEPEG 527
             GL R ALDL   M    + P+   + +++ AC     V+      +++ +    EP  
Sbjct: 528 THGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSM 587

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           D  Y  M ++     R KEA    + M       +PG   + VYG
Sbjct: 588 D-HYGAMVDLLGRAGRIKEAWDFIENM-----PISPG---ITVYG 623


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/524 (38%), Positives = 314/524 (59%), Gaps = 37/524 (7%)

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           Y + L  GL PN +T  Y+LKA    Q ++ G++VHA  ++T    + +V   L+  Y  
Sbjct: 79  YMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVA 138

Query: 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI 224
           CGL+    ++F   + P     LV WT +I+AYV + +P +A+  F  M +  L PD + 
Sbjct: 139 CGLVGKGRQVFDEMRQP----GLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVA 194

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           +  V+SAC  LGDL +   +H +I  +   +  D F+ + LI  Y +CG++  A + F E
Sbjct: 195 ISTVVSACGLLGDLGVAKAMHCFIEKS--GIEVDAFVSSTLISTYGECGSLDYAYRFFQE 252

Query: 285 MPVKN-------------------------------VVSWNSMIAGLTHRGQFKEALDIF 313
            P+KN                               VVSWNSMI G    GQ++EAL  F
Sbjct: 253 TPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWF 312

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             M+  G+ P+  TL+  L++CA+ G L+ G W+H Y+DKN +N DG + ++L+DMY+KC
Sbjct: 313 HEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKC 372

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G ID+A  +F     RD++++T+++ GLA+HG+  KAL  FS+M +  ++PD+VT VGVL
Sbjct: 373 GDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVL 432

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SAC+HAGL+++G  +F  M +V+ L P+ EHYGCMVDL GR G ++EA DLI  MP+  +
Sbjct: 433 SACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEAN 492

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
             +WGA L AC++H  VEL E+    L+  +P    A ++++N+Y+ + +W  ++ LRK+
Sbjct: 493 EIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDPWARVMLSNMYAEEAKWDRSMGLRKE 552

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           +K++ +KK+PGCS +EV G  + F  GD SHP   EI  ++++I
Sbjct: 553 IKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYTEINSMVEKI 596



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 193/396 (48%), Gaps = 49/396 (12%)

Query: 31  LESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIIS---LSRGNEIENLSLQNPQVYL 85
           L S + V + ++ HA +++TG    +  +  L    ++   + +G ++ +  ++ P + L
Sbjct: 101 LVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFD-EMRQPGLVL 159

Query: 86  YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +  II+       P +A+ L+R M   GL P+   +  V+ AC     L V + +H +  
Sbjct: 160 WTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIE 219

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH---------------------------- 176
           K+ +  + +V +TL+  Y  CG +   ++ F                             
Sbjct: 220 KSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQ 279

Query: 177 -FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
            F+  P   RD+VSW ++I  + ++    EA+  F +M  + + P+ + L+  LSAC+  
Sbjct: 280 LFQSMP--DRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASH 337

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
           G L  G  IH Y+  N  N   D  + ++LIDMY KCG+I  A ++F+E   +++ +W S
Sbjct: 338 GALDTGAWIHAYVDKNDMN--RDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTS 395

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           ++ GL   G+ ++AL  F +M+   ++PDD T+V VL++CA+ G L+ G W    ++K  
Sbjct: 396 IVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEK-- 453

Query: 356 INTDGFIG-----NALVDMYAKCGRIDQAFGVFRSM 386
               G +        +VD+  + G + +A+ +   M
Sbjct: 454 --VFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGM 487



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 170/362 (46%), Gaps = 47/362 (12%)

Query: 190 WTTLIQAYVKMDYPTE--AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
           W T+I+  V+    T    +L +    +A LRP+G   + +L A     ++  G ++H  
Sbjct: 57  WNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHAS 116

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
           +    F  S   F+  AL+  Y+ CG +   R+VFDEM    +V W  +I         +
Sbjct: 117 VVRTGFACSE--FVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPE 174

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           +AL++FR M+ +GL PD   +  V+++C  +G L + K +H +++K+ I  D F+ + L+
Sbjct: 175 KALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLI 234

Query: 368 DMYAKCGRIDQAF-------------------------------GVFRSMKCRDVYSYTA 396
             Y +CG +D A+                                +F+SM  RDV S+ +
Sbjct: 235 STYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNS 294

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL-----D 451
           MI G A  G+  +AL  F EM   G+ P+ +T +  LSAC+  G ++ G          D
Sbjct: 295 MIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKND 354

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           M+R  +L         ++D++ + G I +A+ + +      D F W +++    +H + E
Sbjct: 355 MNRDGSLDSS------LIDMYSKCGDIDKAVQIFEE-STRRDLFTWTSIVCGLAMHGRGE 407

Query: 512 LA 513
            A
Sbjct: 408 KA 409



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 8/227 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+  + EM   G+ PN  TL   L AC    +L  G  +HAY  K  +  +  + ++L+
Sbjct: 307 EALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLI 366

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ CG I    ++F        +RDL +WT+++          +A+  F  M +A ++
Sbjct: 367 DMYSKCGDIDKAVQIF----EESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQ 422

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + +V VLSAC+  G L  G    + + +  F L P V  +  ++D+  + G +  A 
Sbjct: 423 PDDVTMVGVLSACAHAGLLDQGWWYFQSM-EKVFGLVPKVEHYGCMVDLLGRMGCLKEAY 481

Query: 280 KVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
            +   MP++ N + W + ++        +      RR+  LGL P D
Sbjct: 482 DLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRL--LGLDPRD 526



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 16/285 (5%)

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL--GLKPDDFTLVCVLN 333
           PSA    D     NV  WN+MI      G       +   MQGL  GL+P+  T + +L 
Sbjct: 43  PSAASRLD---CANVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLK 99

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +  +   ++ G+ VH  + +       F+  AL+  Y  CG + +   VF  M+   +  
Sbjct: 100 ALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVL 159

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG--LVEEGCKHFLD 451
           +T +I          KAL++F  M +VG+ PD V    V+SAC   G   V +    F++
Sbjct: 160 WTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIE 219

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
            S    ++        ++  +G  G +  A    +  P+  +  VW  ++     H  +E
Sbjct: 220 KS---GIEVDAFVSSTLISTYGECGSLDYAYRFFQETPM-KNIVVWNTMIHQSVEHNNLE 275

Query: 512 LAEIVMENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRKKMK 555
           L + + +++    P+ D  ++  M   ++   +++EAL    +M+
Sbjct: 276 LGKQLFQSM----PDRDVVSWNSMIGGFARIGQYQEALTWFHEME 316


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/539 (38%), Positives = 323/539 (59%), Gaps = 37/539 (6%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA++L+ +M   G+ PN  T+  V+ AC + + L +G++V +Y  +  +  +  + N L+
Sbjct: 214 EAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALV 273

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y  CG I A  ++F       A ++LV + T++  YV  ++ ++ ++   +M Q   R
Sbjct: 274 DMYMKCGDICAARQIFD----ECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPR 329

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + ++  ++AC++LGDLS+G   H Y+  N      +  I NA+IDMY+KCG   +A 
Sbjct: 330 PDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDN--ISNAIIDMYMKCGKREAAC 387

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQ-------------------------------FKE 308
           KVF+ MP K VV+WNS+IAGL   G                                F+E
Sbjct: 388 KVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEE 447

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A+++FR MQ  G+  D  T+V + ++C  +G L+L KWV TY++KN I+ D  +G ALVD
Sbjct: 448 AIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVD 507

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           M+++CG    A  VF+ M+ RDV ++TA I  +A+ G    A+++F+EM +  ++PD+V 
Sbjct: 508 MFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVV 567

Query: 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
           FV +L+ACSH G V++G + F  M + + ++P   HYGCMVDL GRAGL+ EA+DLI+SM
Sbjct: 568 FVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSM 627

Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548
           P+ P+  VWG+LL AC+ H  VELA    E L +  PE  G ++L++NIY+S  +W +  
Sbjct: 628 PIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVA 687

Query: 549 KLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           ++R +MKE+ V+K PG S +EV G  +EF  GD+SH +   I  +L+EI  +    GY+
Sbjct: 688 RVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYV 746



 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 171/533 (32%), Positives = 272/533 (51%), Gaps = 57/533 (10%)

Query: 27  QSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLS-RGNEIENLSLQN----- 80
            S  L + K++ +LKQ H  ++K G   H+     +K+I+ S +   +E+L         
Sbjct: 28  SSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGD 87

Query: 81  -----PQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
                  +++YN +I+  ++A    +AI LY +ML+ G++P+ YT P++L AC +  +L 
Sbjct: 88  DDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALS 147

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
            G QVH   +K  L  +++V N+L+  YA CG +    KLF        +R++VSWT+LI
Sbjct: 148 EGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLF----DGMLERNVVSWTSLI 203

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
             Y   D   EA+  FF M +A + P+ + +V V+SAC+KL DL LG K+  YI++    
Sbjct: 204 NGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGME 263

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           LS    + NAL+DMY+KCG+I +AR++FDE   KN+V +N++++   H     + L I  
Sbjct: 264 LS--TIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILD 321

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            M   G +PD  T++  + +CA +G L +GK  H Y+ +N +     I NA++DMY KCG
Sbjct: 322 EMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCG 381

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK---AWK---------------------- 409
           + + A  VF  M  + V ++ ++I GL   G    AW+                      
Sbjct: 382 KREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQ 441

Query: 410 ------ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG---CKHFLDMSRVYNLQP 460
                 A+++F EM   GI  D VT VG+ SAC + G ++     C +        +LQ 
Sbjct: 442 VSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQL 501

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
            T     +VD+F R G    A+ + K M    D   W A +G   +    E A
Sbjct: 502 GT----ALVDMFSRCGDPSSAMHVFKRME-KRDVSAWTAAIGVMAMEGNTEGA 549



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 214/442 (48%), Gaps = 23/442 (5%)

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH----FRQHPQAQRD 186
           ++L+  +Q+H   MK  LL +    N L +L A    I  +  L +    F         
Sbjct: 36  KTLKELKQLHCDMMKKGLLCHKPASN-LNKLIASSVQIGTLESLDYARNAFGDDDGNMAS 94

Query: 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
           L  +  LI+ Y       +AIL +  M    + PD      +LSACSK+  LS G+++H 
Sbjct: 95  LFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHG 154

Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
            +      L  D+F+ N+LI  Y +CG +   RK+FD M  +NVVSW S+I G + R   
Sbjct: 155 AVL--KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLS 212

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
           KEA+ +F +M   G++P+  T+VCV+++CA +  LELGK V +Y+ +  +     + NAL
Sbjct: 213 KEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNAL 272

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           VDMY KCG I  A  +F     +++  Y  ++     H  A   L I  EM Q G  PD+
Sbjct: 273 VDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDK 332

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY----GCMVDLFGRAGLIREAL 482
           VT +  ++AC+  G +  G       S  Y L+   E +      ++D++ + G    A 
Sbjct: 333 VTMLSTIAACAQLGDLSVG-----KSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAAC 387

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
            + + MP       W +L+        +ELA  + + ++  +     ++  M       +
Sbjct: 388 KVFEHMP-NKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLV---SWNTMIGALVQVS 443

Query: 543 RWKEALKLRKKMKERKVKKTPG 564
            ++EA++L ++M+ + +   PG
Sbjct: 444 MFEEAIELFREMQNQGI---PG 462


>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
 gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
          Length = 581

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/480 (41%), Positives = 303/480 (63%), Gaps = 5/480 (1%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           + Y+L     A  +  S+ VG Q+H+ S+K  L+S+ +V N+L+ +Y+ C       ++ 
Sbjct: 92  DNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVL 151

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
                PQ   D VSW T+I  Y++   P +A+ +F  M +  +  D + L+  L A +K 
Sbjct: 152 D--SAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKA 209

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
           G + +G   H  +  N   +  + ++ ++LI MY KCG +  ARKVF  M  +NVV W S
Sbjct: 210 GKVKVGRLCHSLVVVNGAGI--NCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTS 267

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           MI+G T  G+FKEA+++FR MQ  G+K DD T+  V++SCA +G L+LG++VH Y D + 
Sbjct: 268 MISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHG 327

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           +  +  + N+L+DMY+KCG I++A  +F  +  RDV+S+TAMI+G  ++G   +ALD+F+
Sbjct: 328 LGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFA 387

Query: 416 EMSQVG-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           +M   G + P+EVTF+GVL++CSH GLVE+G  +F  MS VY L P+ EHYGCMVDL GR
Sbjct: 388 QMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHYGCMVDLLGR 447

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           A L+ EA   IK+MP+ PD  VW +LL AC+   +V LAE V E ++  EP+    ++L+
Sbjct: 448 AKLLTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPKKCAGHVLL 507

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           +N+Y++ +RW +  +LR  M   ++ K PGCS +EV G  +EF  GD+SH +T  IY +L
Sbjct: 508 SNVYATTSRWVDVNELRTSMDNSRMSKQPGCSFIEVDGCVHEFFAGDESHLETEAIYNIL 567



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 148/261 (56%), Gaps = 8/261 (3%)

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N II   L    P +A+  + +M+ + +  +  TL   L A  ++  ++VG+  H+  +
Sbjct: 164 WNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVV 223

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
                 N Y+ ++L+ +YA CGL++   K+FH       +R++V WT++I  Y ++    
Sbjct: 224 VNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMH----ERNVVCWTSMISGYTQLGKFK 279

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EA+  F DM    ++ D   +  V+S+C+++G L LG  +H Y  D H  L  ++ + N+
Sbjct: 280 EAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAY-CDVH-GLGKELSVKNS 337

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKP 323
           LIDMY KCG+I  A ++F  +  ++V SW +MI G T  G   EALD+F +M+G G + P
Sbjct: 338 LIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMP 397

Query: 324 DDFTLVCVLNSCANIGWLELG 344
           ++ T + VL SC++ G +E G
Sbjct: 398 NEVTFLGVLTSCSHGGLVEQG 418



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+R+M I G+  +  T+  V+ +C Q  +L +G+ VHAY     L   + V N+L+
Sbjct: 280 EAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLI 339

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANL 218
            +Y+ CG I   H++F        +RD+ SWT +I  +      +EA+  F  M  +  +
Sbjct: 340 DMYSKCGDINKAHEIF----CGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKV 395

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            P+ +  + VL++CS  G +  G    + ++   + L+P +  +  ++D+  +   +  A
Sbjct: 396 MPNEVTFLGVLTSCSHGGLVEQGFHYFQRMS-MVYKLAPRIEHYGCMVDLLGRAKLLTEA 454

Query: 279 RKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
            +    MP+  +VV W S++      G+   A  +  R+  L L+P
Sbjct: 455 EQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERI--LELEP 498


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/536 (38%), Positives = 324/536 (60%), Gaps = 27/536 (5%)

Query: 78  LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLL---PNTYTLPYVLKACWQSQSL 133
           ++NP  + +N  I+  S + NP +A+  Y++ML +G     P+ +T P + K C   +  
Sbjct: 38  IENPNAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLN 97

Query: 134 RVGQQV--HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
            +G  +  H + ++  L+S+V+  N  + ++A CG ++   K+F   + P   RDLVSW 
Sbjct: 98  SLGHMILGHVFKLRLELVSHVH--NASIHMFASCGEMENARKVFD--ESPV--RDLVSWN 151

Query: 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
            LI  Y K+    +AI  +  M    ++PD + ++ ++S+C+ LGDL+ G + + Y+  N
Sbjct: 152 CLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKAN 211

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSAR-------------KVFDEMPVKNVVSWNSMIA 298
              ++  + + NAL+DM+ KCG+I  AR             K+FD+M  K+VV WN+MI 
Sbjct: 212 GLRMT--IPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIG 269

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G     + ++AL +F+ MQ     PD+ T++  L++C+ +G L++G W+H Y++K+ ++ 
Sbjct: 270 GSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSL 329

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           +  +G +LVDMYAKCG I +A  VF  ++ R+  +YTA+I GLA+HG A  A+  F+EM 
Sbjct: 330 NVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMI 389

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             GI PDE+TF+G+LSAC H G+++ G  +F  M   +NL PQ +HY  MVDL GRAGL+
Sbjct: 390 DAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLL 449

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            EA  L++SMP+  DA VWGALL  C++H  V+L E   + L+  +P   G Y+L+  +Y
Sbjct: 450 EEADKLMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMY 509

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
              N W++A + R+ M ER V+K PGCS +EV G   EF   DKS P++ +IY  L
Sbjct: 510 GEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVSEFIVRDKSRPESEKIYDCL 565



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 17/245 (6%)

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL---KPDDFTLVCVLNSCA 336
           K+   +   N  SWN  I G +     K+A+  +++M   G    +PD FT   +   CA
Sbjct: 33  KILKGIENPNAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCA 92

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           ++    LG  +  ++ K  +     + NA + M+A CG ++ A  VF     RD+ S+  
Sbjct: 93  DLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNC 152

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I G    G+  KA++++  M   G++PD+VT +G++S+C+  G +  G K F +  +  
Sbjct: 153 LINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRG-KEFYEYVKAN 211

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREA---LDLIKSMPLVP---------DAFVWGALLGAC 504
            L+        ++D+F + G I EA    D ++   +V          D  +W A++G  
Sbjct: 212 GLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGG- 270

Query: 505 KIHAK 509
            + AK
Sbjct: 271 SVQAK 275


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/584 (38%), Positives = 325/584 (55%), Gaps = 13/584 (2%)

Query: 30  RLESSKSVGQLKQFHAFIIKTGSPQ--HQTQILYDKIISLSRGNEIENL--SLQNPQVYL 85
           R    K +   KQ H  IIK+   Q  H    L    I   R  E   +  +L       
Sbjct: 37  RCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGAS 96

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I   + + +  +A+ L+REM  +G+ PN  T   +LKAC    +L+ G++VHA   
Sbjct: 97  WNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIR 156

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLF-HFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
              L S+V V   L+R+Y  CG I    ++F +   H     D++SWT +I AY +    
Sbjct: 157 HGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNH-----DIISWTVMIGAYAQSGNG 211

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EA      M Q   +P+ +  V +L+AC+  G L    ++HR+  D    L  DV +  
Sbjct: 212 KEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLEL--DVRVGT 269

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL+ MY K G+I  AR VFD M V++VVSWN MI      G+  EA D+F +MQ  G KP
Sbjct: 270 ALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKP 329

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D    + +LN+CA+ G LE  K +H +   + +  D  +G ALV MY+K G ID A  VF
Sbjct: 330 DAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVF 389

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             MK R+V S+ AMI GLA HG    AL++F  M+  G++PD VTFV VLSACSHAGLV+
Sbjct: 390 DRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVD 449

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG   +L M++VY ++P   H  CMVDL GRAG + EA   I +M + PD   WGALLG+
Sbjct: 450 EGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGS 509

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C+ +  VEL E+V +  ++ +P+    Y+L++NIY+   +W     +R  M+ER ++K P
Sbjct: 510 CRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEP 569

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           G S +EV  + ++F   D SHP+  EI +  D+++ + K  GYI
Sbjct: 570 GRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYI 613



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/439 (32%), Positives = 225/439 (51%), Gaps = 18/439 (4%)

Query: 93  LSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
           +  AN L EAI +    L +GL+ +++    VLK C + + L   +QVH   +K+ +  N
Sbjct: 3   VQTANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQN 62

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
            +V N L+ +Y  CG ++    +F        ++   SW  +I  YV+  +  +A+  F 
Sbjct: 63  AHVMNNLLHVYIECGRLQEARCVF----DALVKKSGASWNAMIAGYVEHKHAEDAMRLFR 118

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
           +MC   ++P+    +I+L AC+ L  L  G ++H  I   H  L  DV +  AL+ MY K
Sbjct: 119 EMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACI--RHGGLESDVRVGTALLRMYGK 176

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           CG+I  AR++FD +   +++SW  MI      G  KEA  +  +M+  G KP+  T V +
Sbjct: 177 CGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSI 236

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           LN+CA+ G L+  K VH +     +  D  +G ALV MYAK G ID A  VF  MK RDV
Sbjct: 237 LNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDV 296

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE---EGCKH 448
            S+  MI   A HG+  +A D+F +M   G +PD + F+ +L+AC+ AG +E   +  +H
Sbjct: 297 VSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRH 356

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
            LD     +++  T     +V ++ ++G I +A  +   M  V +   W A++     H 
Sbjct: 357 ALDSGLEVDVRVGT----ALVHMYSKSGSIDDARVVFDRMK-VRNVVSWNAMISGLAQHG 411

Query: 509 KVELAEIVMENLVRFEPEG 527
              L +  +E   R    G
Sbjct: 412 ---LGQDALEVFRRMTAHG 427


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 344/587 (58%), Gaps = 21/587 (3%)

Query: 35  KSVGQL------KQFHAFIIKTGSPQ-----HQTQILYDKIISLSRGNEIENLSLQNPQV 83
           K+ GQ+      K+ H F++K G  +     +   ++Y +   +     + +  ++   V
Sbjct: 102 KACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER-DV 160

Query: 84  YLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
             ++ +I+ LS     + A+ L REM    + P+   +  ++     + ++R+G+ +HAY
Sbjct: 161 VSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAY 220

Query: 143 SMKTALLSNVYVFNT--LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            ++ +   ++ V  T  L+ +YA CG +    +LF+       Q+ +VSWT +I   ++ 
Sbjct: 221 VIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFN----GLTQKTVVSWTAMIAGCIRS 276

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           +   E    F  M + N+ P+ + ++ ++  C   G L LG ++H YI  N F++S  + 
Sbjct: 277 NRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVS--LA 334

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           +  AL+DMY KC +I +AR +FD    ++V+ W +M++         +A ++F +M+  G
Sbjct: 335 LATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG 394

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           ++P   T+V +L+ CA  G L+LGKWVH+Y+DK  +  D  +  ALVDMYAKCG I+ A 
Sbjct: 395 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAG 454

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            +F     RD+  + A+I G A+HG   +ALDIF+EM + G++P+++TF+G+L ACSHAG
Sbjct: 455 RLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAG 514

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LV EG K F  M   + L PQ EHYGCMVDL GRAGL+ EA ++IKSMP+ P+  VWGAL
Sbjct: 515 LVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGAL 574

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           + AC++H   +L E+    L+  EPE  G  +LM+NIY++ NRW +A  +RK MK   +K
Sbjct: 575 VAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMK 634

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K PG S++EV G  +EF  GD+SHP+   I ++L E+  +    GY+
Sbjct: 635 KEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYV 681


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/577 (36%), Positives = 335/577 (58%), Gaps = 69/577 (11%)

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR--VGQQVHAYSMKTALLSN 151
           S+ +P     L+R M    + P+ +T  ++ K C  S   R  +   +HA  ++T L S 
Sbjct: 83  SSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFK-CSSSSRPRALLCTMLHAACLRTMLPSA 141

Query: 152 V-YVFNTLMRLYAVCGLIKAVHKLFH-----------------------------FRQHP 181
             +V N+L+ +Y   GL   V + F                                Q P
Sbjct: 142 APFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAP 201

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
              RD++SWT+LI AY + D   EA+  F +M    + PD + ++ VLSACS+L DL LG
Sbjct: 202 V--RDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELG 259

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD------------------ 283
             +H  + +   ++S ++ +  ALIDMY KCG+   AR+VFD                  
Sbjct: 260 CSLHSLVKEKGMSMSENLVV--ALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGY 317

Query: 284 --------------EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
                         +M V++++++NSMI G  H GQ +EAL +F  M+   L+ D+FT+V
Sbjct: 318 CKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVV 377

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            +L++CA++G L  G+ +H  ++   + TD +IG AL+DMY KCGR+++A  VF+ M  R
Sbjct: 378 SLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKR 437

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           DV+++TAMI GLA +G     L+ F +M   G +P+ V+++ VL+ACSH+ L+ EG  +F
Sbjct: 438 DVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYF 497

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
            +M  +YN+ PQ EHYGCM+DL GR+GL+ EA+DL+K+MP+ P++ +W ++L AC++H +
Sbjct: 498 DEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKR 557

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           ++LA+   E+L++ EP+ D  Y+ + NI     +W++A K+R  M+ER+VKKT G S V 
Sbjct: 558 IDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVT 617

Query: 570 VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           V G+ ++F   DKSHP+ LEI  +L+EI H+ K+ GY
Sbjct: 618 VAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSAGY 654



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 244/506 (48%), Gaps = 21/506 (4%)

Query: 74   ENLSLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQS-Q 131
              L LQN    + N +++ L N    E  I  + +M  + L  N  +  Y +K C+Q+ +
Sbjct: 852  RELPLQN--TAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGE 909

Query: 132  SLRVGQQVHAYSMKTALL-SNVYVFNTLMRLYAVCG----LIKAVHKLFHFRQHPQAQRD 186
             L  G+Q+H   +K   + SN+++ N+L+ LY+  G     +KA++ +           D
Sbjct: 910  WLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDIL--------SED 961

Query: 187  LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
            ++SW +++  Y    +  EA+     M      P     V +L+   K GD  LG++IH 
Sbjct: 962  VISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHG 1021

Query: 247  YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
             +    F+ S  V +   LIDMY KC     +  +F+E+P   +   NS+I        F
Sbjct: 1022 IVHKLGFSCS-SVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCNMF 1080

Query: 307  KEALDIFRRMQGLGLKPDDFTLVCVLN--SCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
              AL+I   M   G+ PDD T    +   S +    L   + +H+ L K     D  + +
Sbjct: 1081 DAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCS 1140

Query: 365  ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
            +L+  YA  G++  +  +F  +   +V  +TA+I   A +G   +A+++F +M   G++P
Sbjct: 1141 SLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKP 1200

Query: 425  DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
            D VTF+  ++ C  AG+ EEG      M     L P   H+ CMV+L  R G ++EA+++
Sbjct: 1201 DNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEM 1260

Query: 485  IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
            ++  PL      W +LL +CK H +  L +     L+    +     + ++N ++     
Sbjct: 1261 MEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDR 1320

Query: 545  KEALKLRKKMKERKVKKTPGCSLVEV 570
            + AL++++    ++VKK+ G SL+EV
Sbjct: 1321 ETALRIKEMTNVKEVKKS-GHSLIEV 1345



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 52/325 (16%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGL---THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN- 333
           A  +FD MP    +   ++ A     T  G       +FRRM+   ++PD FT   +   
Sbjct: 56  ALHLFDRMPASTFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKC 115

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDG-FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           S ++     L   +H    +  + +   F+ N+L+ MY + G        F  +  +D  
Sbjct: 116 SSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAV 175

Query: 393 SYTAMIVGLAIHG-------------------------------KAWKALDIFSEMSQVG 421
           S+T +I GLA  G                               +A +A+D F  M   G
Sbjct: 176 SWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEG 235

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCK-HFL----DMSRVYNLQPQTEHYGCMVDLFGRAG 476
           I PD+VT +GVLSACS    +E GC  H L     MS   NL         ++D++ + G
Sbjct: 236 IAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENL------VVALIDMYAKCG 289

Query: 477 LIREALDLIKSMPLVPDAFVWGALL-GACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
               A ++  ++        W A++ G CK H  V++A  + + +   E      +  M 
Sbjct: 290 DFGHAREVFDAVGRGRRPQSWNAIIDGYCK-HGHVDVARSLFDQM---EVRDIITFNSMI 345

Query: 536 NIYSSKNRWKEALKLRKKMKERKVK 560
             Y    + +EAL L   M+   ++
Sbjct: 346 TGYIHSGQLREALLLFMNMRRHDLR 370



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 134/316 (42%), Gaps = 18/316 (5%)

Query: 183  AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            A RD+ S   +I  +++      A   +  M  + +R        +L  CS    L L  
Sbjct: 758  AVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQLHG 817

Query: 243  KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            ++          L  + F+ +AL++ Y+   +  ++  +F E+P++N    N ++ GL +
Sbjct: 818  RVLA------LGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGN 871

Query: 303  RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG-WLELGKWVH-TYLDKNHINTDG 360
                +E +  F  M+   L+ +  +    +  C   G WLE G+ +H   L    I ++ 
Sbjct: 872  LKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNI 931

Query: 361  FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            F+ N+LVD+Y+  G           +   DV S+ +++   A  G   +A+    +M   
Sbjct: 932  FLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWH 991

Query: 421  GIEPDEVTFVGVLSACSHAGLVEEGCK-----HFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
            G  P   +FV +L+     G  + G +     H L  S   ++  QT     ++D++G+ 
Sbjct: 992  GKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFS-CSSVHVQTT----LIDMYGKC 1046

Query: 476  GLIREALDLIKSMPLV 491
                 +L +   +P +
Sbjct: 1047 CCFDHSLAIFNEIPSI 1062


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 310/523 (59%), Gaps = 7/523 (1%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N II   S N    +A+ L   M  +G  P++ TL  VL A      L VG+ +H Y++
Sbjct: 216 WNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAI 275

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           +      V +   L  +Y+ CG ++    +F        Q+ +VSW +++  YV+   P 
Sbjct: 276 RAGFAKLVNISTALADMYSKCGSVETARLIFD----GMDQKTVVSWNSMMDGYVQNGEPE 331

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           +AI  F  M +  + P G+ ++  L AC+ LGDL  G  +H+++  +  NL  D+ + N+
Sbjct: 332 KAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFV--DQLNLGSDISVMNS 389

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LI MY KC  +  A  +F+ +  +  VSWN+MI G    G+  EAL+ F  M+ LG+KPD
Sbjct: 390 LISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPD 449

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
            FT+V V+ + A +      KW+H  + ++ ++ + F+  ALVDMY+KCG I  A  +F 
Sbjct: 450 SFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD 509

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            +  R V ++ AMI G   HG    ALD+F +M +  +EP+++T++ V+SACSH+GLV+E
Sbjct: 510 MISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDE 569

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G +HF  M + Y L+P  +HYG MVDL GRAG I+EA D I++MP+ P   V+GA  GAC
Sbjct: 570 GLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGAC 629

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           KIH  +E+ E   + L    P+  G ++L+ NIY+S ++W +  ++RK M+++ +KKTPG
Sbjct: 630 KIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPG 689

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           CS+VE+  E + F  G  +HP++  IY  L+E++++ K  GY+
Sbjct: 690 CSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYV 732



 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 174/585 (29%), Positives = 288/585 (49%), Gaps = 60/585 (10%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENLS-----LQNPQVY 84
           LE   S+ +L Q    +IK G   +   +   K++SL S+   I   +     + +    
Sbjct: 56  LELCTSMKELHQIIPLVIKNG--LYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDA 113

Query: 85  LYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           LY+ +++  +  + LE A+A    M    + P  Y   Y+LK C  +  L+ G+++H   
Sbjct: 114 LYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQL 173

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +  +  +NV+    ++ +YA C  I   +K+F        +RDLVSW T+I  + +  + 
Sbjct: 174 ITNSFAANVFAMTGVVNMYAKCRQIDDAYKMF----DRMPERDLVSWNTIIAGFSQNGFA 229

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            +A+     M     RPD + LV VL A + +G L +G  IH Y     F  +  V I  
Sbjct: 230 KKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGF--AKLVNIST 287

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL DMY KCG++ +AR +FD M  K VVSWNSM+ G    G+ ++A+ +F +M   G+ P
Sbjct: 288 ALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDP 347

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
              T++  L++CA++G LE GK+VH ++D+ ++ +D  + N+L+ MY+KC R+D A  +F
Sbjct: 348 TGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIF 407

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV------LSACS 437
            ++  R   S+ AMI+G A +G+  +AL+ FSEM  +G++PD  T V V      LS   
Sbjct: 408 NNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTR 467

Query: 438 HA----GLVEEGC--------KHFLDM----------SRVYNLQPQTE--HYGCMVDLFG 473
           HA    GL+   C           +DM           +++++        +  M+D +G
Sbjct: 468 HAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYG 527

Query: 474 RAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVR---FEPEG 527
             GL R ALDL   M    + P+   + +++ AC     V+      +++ +    EP  
Sbjct: 528 THGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSM 587

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           D  Y  M ++     R KEA    + M       +PG   + VYG
Sbjct: 588 D-HYGAMVDLLGRAGRIKEAWDFIENM-----PISPG---ITVYG 623


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/577 (36%), Positives = 335/577 (58%), Gaps = 69/577 (11%)

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR--VGQQVHAYSMKTALLSN 151
           S+ +P     L+R M    + P+ +T  ++ K C  S   R  +   +HA  ++T L S 
Sbjct: 21  SSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFK-CSSSSRPRALLCTMLHAACLRTMLPSA 79

Query: 152 V-YVFNTLMRLYAVCGLIKAVHKLFH-----------------------------FRQHP 181
             +V N+L+ +Y   GL   V + F                                Q P
Sbjct: 80  APFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAP 139

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
              RD++SWT+LI AY + D   EA+  F +M    + PD + ++ VLSACS+L DL LG
Sbjct: 140 V--RDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELG 197

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD------------------ 283
             +H  + +   ++S ++ +  ALIDMY KCG+   AR+VFD                  
Sbjct: 198 CSLHLLVKEKGMSMSENLVV--ALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGY 255

Query: 284 --------------EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
                         +M V++++++NSMI G  H GQ +EAL +F  M+   L+ D+FT+V
Sbjct: 256 CKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVV 315

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            +L++CA++G L  G+ +H  ++   + TD +IG AL+DMY KCGR+++A  VF+ M  R
Sbjct: 316 SLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKR 375

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           DV+++TAMI GLA +G     L+ F +M   G +P+ V+++ VL+ACSH+ L+ EG  +F
Sbjct: 376 DVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYF 435

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
            +M  +YN+ PQ EHYGCM+DL GR+GL+ EA+DL+K+MP+ P++ +W ++L AC++H +
Sbjct: 436 DEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKR 495

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           ++LA+   E+L++ EP+ D  Y+ + NI     +W++A K+R  M+ER+VKKT G S V 
Sbjct: 496 IDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVT 555

Query: 570 VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           V G+ ++F   DKSHP+ LEI  +L+EI H+ K+ GY
Sbjct: 556 VAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSAGY 592



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 244/506 (48%), Gaps = 21/506 (4%)

Query: 74   ENLSLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQS-Q 131
              L LQN    + N +++ L N    E  I  + +M  + L  N  +  Y +K C+Q+ +
Sbjct: 790  RELPLQN--TAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGE 847

Query: 132  SLRVGQQVHAYSMKTALL-SNVYVFNTLMRLYAVCG----LIKAVHKLFHFRQHPQAQRD 186
             L  G+Q+H   +K   + SN+++ N+L+ LY+  G     +KA++ +           D
Sbjct: 848  WLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDIL--------SED 899

Query: 187  LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
            ++SW +++  Y    +  EA+     M      P     V +L+   K GD  LG++IH 
Sbjct: 900  VISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHG 959

Query: 247  YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
             +    F+ S  V +   LIDMY KC     +  +F+E+P   +   NS+I        F
Sbjct: 960  IVHKLGFSCS-SVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLGCNMF 1018

Query: 307  KEALDIFRRMQGLGLKPDDFTLVCVLN--SCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
              AL+I   M   G+ PDD T    +   S +    L   + +H+ L K     D  + +
Sbjct: 1019 DAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCS 1078

Query: 365  ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
            +L+  YA  G++  +  +F  +   +V  +TA+I   A +G   +A+++F +M   G++P
Sbjct: 1079 SLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKP 1138

Query: 425  DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
            D VTF+  ++ C  AG+ EEG      M     L P   H+ CMV+L  R G ++EA+++
Sbjct: 1139 DNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEM 1198

Query: 485  IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
            ++  PL      W +LL +CK H +  L +     L+    +     + ++N ++     
Sbjct: 1199 MEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDR 1258

Query: 545  KEALKLRKKMKERKVKKTPGCSLVEV 570
            + AL++++    ++VKK+ G SL+EV
Sbjct: 1259 ETALRIKEMTNVKEVKKS-GHSLIEV 1283



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 134/316 (42%), Gaps = 18/316 (5%)

Query: 183  AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            A RD+ S   +I  +++      A   +  M  + +R        +L  CS    L L  
Sbjct: 696  AVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQLHG 755

Query: 243  KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            ++          L  + F+ +AL++ Y+   +  +A  +F E+P++N    N ++ GL +
Sbjct: 756  RVLA------LGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGN 809

Query: 303  RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG-WLELGKWVH-TYLDKNHINTDG 360
                +E +  F  M+   L+ +  +    +  C   G WLE G+ +H   L    I ++ 
Sbjct: 810  LKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNI 869

Query: 361  FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            F+ N+LVD+Y+  G           +   DV S+ +++   A  G   +A+    +M   
Sbjct: 870  FLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWH 929

Query: 421  GIEPDEVTFVGVLSACSHAGLVEEGCK-----HFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
            G  P   +FV +L+     G  + G +     H L  S   ++  QT     ++D++G+ 
Sbjct: 930  GKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFS-CSSVHVQTT----LIDMYGKC 984

Query: 476  GLIREALDLIKSMPLV 491
                 +L +   +P +
Sbjct: 985  CCFDHSLAIFNEIPSI 1000


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/605 (36%), Positives = 342/605 (56%), Gaps = 47/605 (7%)

Query: 31  LESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSR--GNEIENL-SLQNPQVY 84
           LE  K +  LKQ  A +I  G    P   ++++    +S SR     ++ L  ++NP ++
Sbjct: 60  LEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIF 119

Query: 85  LYNFIIQCLSNA-NPLEAIALYREMLIKGLL---PNTYTLPYVLKACWQSQSLRVGQQVH 140
            +N  I+  S + NP E+  LY++ML  G     P+ +T P + K C   +   +G  + 
Sbjct: 120 SWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMIL 179

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            + +K  L    +V N  + ++A CG ++   K+F         RDLVSW  LI  Y K+
Sbjct: 180 GHVLKLRLELVSHVHNASIHMFASCGDMENARKVFD----ESPVRDLVSWNCLINGYKKI 235

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               +AI  +  M    ++PD + ++ ++S+CS LGDL+ G + + Y+ +N   ++  + 
Sbjct: 236 GEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMT--IP 293

Query: 261 IHNALIDMYLKCGNIPSAR-------------------------------KVFDEMPVKN 289
           + NAL+DM+ KCG+I  AR                               K+FD+M  K+
Sbjct: 294 LVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKD 353

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           VV WN+MI G     + ++AL +F+ MQ    KPD+ T++  L++C+ +G L++G W+H 
Sbjct: 354 VVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHR 413

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           Y++K  ++ +  +G +LVDMYAKCG I +A  VF  ++ R+  +YTA+I GLA+HG A  
Sbjct: 414 YIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDAST 473

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           A+  F+EM   GI PDE+TF+G+LSAC H G+++ G  +F  M   +NL PQ +HY  MV
Sbjct: 474 AISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMV 533

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL GRAGL+ EA  L++SMP+  DA VWGALL  C++H  VEL E   + L+  +P   G
Sbjct: 534 DLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSG 593

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y+L+  +Y   N W++A + R+ M ER V+K PGCS +EV G   EF   DKS P++ +
Sbjct: 594 IYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEK 653

Query: 590 IYKLL 594
           IY  L
Sbjct: 654 IYDRL 658


>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 581

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/485 (40%), Positives = 299/485 (61%), Gaps = 6/485 (1%)

Query: 112 GLLP-NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170
           G +P + Y+L   L    +  S+ VG Q+HA S+K  L S+ +V NTL+ +Y+ C     
Sbjct: 87  GYMPIDNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPST 146

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
              +      P+   D VSW T+I  Y+    P +A+ +F  M +  +  D + L+  L 
Sbjct: 147 ARSVLD--SAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALV 204

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           AC++   + +G   H  +  N F +  + ++ ++LI MY KCG +  AR++FD MP +N 
Sbjct: 205 ACARTCMMKVGKLCHALLVTNGFEI--NCYMGSSLISMYAKCGQVEDARRIFDGMPDRNA 262

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           V W SMI+G T  GQ KEA+ +FR MQ  G+K DD T+  V++SC  +G L+LG++VH Y
Sbjct: 263 VCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAY 322

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
            D + +  D  + N+L+DMY+KCG I +A+ +F  M  RD +S+T +I+G A +G + +A
Sbjct: 323 CDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEA 382

Query: 411 LDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           LD+F++M + G + P+E+TF+GVL++CSH GLVE+G +HF  MS +Y + P+ EHYGCMV
Sbjct: 383 LDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMV 442

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL GRA L+ EA   IK MP+ PDA +W +LL AC+   +V LAE V E +   EP   G
Sbjct: 443 DLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCG 502

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
             +L++ +Y++ +RW +A K+R  +   +  K PGCS +EV G  +EF  GD+SH +T  
Sbjct: 503 GDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDGCVHEFFAGDESHFETEA 562

Query: 590 IYKLL 594
           IY  L
Sbjct: 563 IYSTL 567


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/607 (36%), Positives = 334/607 (55%), Gaps = 47/607 (7%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNE-----IENL--SLQNPQV 83
           L   +S+ +L Q HA ++  GS    + +L     +L++           L   +  P  
Sbjct: 18  LRQCRSIQRLNQLHAHLLVHGSLSAASDLLLASYCALAKAGHGVLCHARRLFDGIPGPDR 77

Query: 84  YLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
            +YN II+   N++ P EA+ L+R ML +G+LPN +TLP+V+KAC  +Q+      VH  
Sbjct: 78  VMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAVHGV 137

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
           +++  L+  V+V N L+  YA  G +    + F         R++VSW ++I  Y +   
Sbjct: 138 ALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFD----EMVDRNVVSWNSMIGGYAQAGD 193

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFI 261
             E    F +M +     D   LV +L ACS+ G+L +G  +H R +         D+ +
Sbjct: 194 TREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGS---RVDLIL 250

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVK-------------------------------NV 290
            +AL+DMY KCG++  AR+ F+ MP+K                               N+
Sbjct: 251 ESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNI 310

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           VSWN+MI+    RGQ  EALD++ +MQ  GL PD+ TLV VL++   IG L +GK VH Y
Sbjct: 311 VSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLY 370

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           +  N  N D  + N+L+DMYAKCG++D A  +F  M  R+V S+  +I GLA+HG+A   
Sbjct: 371 IRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDT 430

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           +  F  M      PD +TFV +LSACSH GL+E G  +F  M  VYN++ + EHY CMVD
Sbjct: 431 ITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVD 490

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           L GR G + +A+ LIK MP+ PD  VWGALLGAC+IH  V++   V++ L+  E    G 
Sbjct: 491 LLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGGL 550

Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
           ++L++N+    ++W++  +LRK MKE   +K  G S +E+    +EF   D  H ++ EI
Sbjct: 551 FVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEINNSIHEFGVEDIRHERSSEI 610

Query: 591 YKLLDEI 597
           Y ++D++
Sbjct: 611 YAVVDQL 617


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/496 (39%), Positives = 300/496 (60%), Gaps = 4/496 (0%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           ML  G  PN +T P+ +K+C        G+Q+H +  KT  L   +V  +L+ +Y  C L
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           I    KLF   ++PQ+++  V + +L+  Y       + ++ F +M +  +  +G+ ++ 
Sbjct: 61  IDNARKLFD--ENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLG 118

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           ++  C   G+L LG+ +H +     F L  D  + N L+ MY+K G I   RK+FDEMP 
Sbjct: 119 LVQPCGIPGNLGLGMCVHGFCVK--FGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPR 176

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K +++WN+MI G    G     L++++ M+  G  PD  TLV VL+SCA++G L +GK V
Sbjct: 177 KGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEV 236

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
              ++    +++ F+ NALV+MYA+CG + +A  +F  M  + V S+TA+I G  +HG+ 
Sbjct: 237 ERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQG 296

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
             A+ +F EM + GI+PD   FV VLSACSHAGL  +G  +F  M R Y L+P  EHY C
Sbjct: 297 EVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSC 356

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           MVDL GRAG + EA +LI+SM +  D  +WGALLGACKIH  VELAE+  E ++  EP  
Sbjct: 357 MVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTN 416

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
            G Y+L++N+Y+     +  L++R  M++RK+KK PGCS VE  G  + F  GD++HP+T
Sbjct: 417 TGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQT 476

Query: 588 LEIYKLLDEIMHQSKN 603
            EIYK L+E+ +  K+
Sbjct: 477 NEIYKKLNELENLVKD 492



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 201/406 (49%), Gaps = 23/406 (5%)

Query: 41  KQFHAFIIKTG---SPQHQTQI--LYDKIISLSRGNEIENLSLQNPQ----VYLYNFIIQ 91
           KQ H  + KTG    P  QT +  +Y K   +    ++ +   +NPQ       YN ++ 
Sbjct: 30  KQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFD---ENPQSRKLTVCYNSLLS 86

Query: 92  CLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
             + N+   + + L+ EM   G+  N  T+  +++ C    +L +G  VH + +K  L  
Sbjct: 87  GYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDM 146

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           +  V N L+ +Y   G I    KLF        ++ L++W  +I  Y +       +  +
Sbjct: 147 DSSVGNCLLTMYVKSGEIDCGRKLF----DEMPRKGLITWNAMINGYAQNGLANNVLELY 202

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
            +M      PD + LV VLS+C+ LG LS+G ++ R +    F  S + F++NAL++MY 
Sbjct: 203 KEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEG--FGFSSNPFLNNALVNMYA 260

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           +CGN+  AR +FD MPVK+VVSW ++I G    GQ + A+ +F  M   G+KPD    V 
Sbjct: 261 RCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVS 320

Query: 331 VLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
           VL++C++ G    G      +++ + +       + +VD+  + GR+++A  +  SM+ R
Sbjct: 321 VLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVR 380

Query: 390 -DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            D   + A++    IH     A   F ++  + +EP    +  +LS
Sbjct: 381 ADGALWGALLGACKIHRNVELAELAFEQV--IELEPTNTGYYVLLS 424


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/526 (38%), Positives = 319/526 (60%), Gaps = 14/526 (2%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLE---AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
           +Q P + L++ ++   S    L    +   YR+M   G++P+ +T P +LKA ++   LR
Sbjct: 62  IQTPSIQLWDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKAVFK---LR 118

Query: 135 VGQ--QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
                Q HA+ +K    S+++V N+L+  Y+ CGL +   ++F   +     +D+VSWT 
Sbjct: 119 DANPFQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTE----DKDVVSWTA 174

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           +I  +V+ D   EA+  F +M ++ +  + M +V VL A  K  D+  G  IH +  +  
Sbjct: 175 MIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAG 234

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
             +  DVFI ++L+DMY KCG    A+KVFDEMP +NVV+W ++IAG      F++ + +
Sbjct: 235 -RVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFV 293

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F  M    + P++ TL  VL++CA++G L  G+ VH Y+ KN I  +  +G  L+D YAK
Sbjct: 294 FEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAK 353

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           CG +++A  VF  ++ ++VY++TAMI G A HG A  A+D+F  M    + P+EVTF+ V
Sbjct: 354 CGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVV 413

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           LSAC+H GLVEEG + FL M   +NL+P+ +HY CMVDLFGR GL+ EA  LI+ MP+ P
Sbjct: 414 LSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEP 473

Query: 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552
              VWGAL G+C IH   EL +     +++ +P   G Y L+ N+YS    W +  ++RK
Sbjct: 474 TNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVARVRK 533

Query: 553 KMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP-KTLEIYKLLDEI 597
           +MK+++V K+PGCS +EV G+ +EF   D   P ++ ++YK LD +
Sbjct: 534 QMKDQQVVKSPGCSWIEVKGKLHEFIAFDDKKPLESDDLYKTLDNV 579


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/584 (35%), Positives = 337/584 (57%), Gaps = 14/584 (2%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQ------NPQVY 84
           ++SS    QL+Q HA ++  G     +  L  K+I  S        + Q       PQV+
Sbjct: 28  IDSSTHKAQLRQIHARLLVLG--LQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVF 85

Query: 85  LYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            +N II+  S  N  + A+ +Y +M +  + P+++T P++LKAC     L++G+ VHA  
Sbjct: 86  PWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQV 145

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
            +    ++V+V N L+ LYA C  +     +F     P  +R +VSWT ++ AY +   P
Sbjct: 146 FRLGFEADVFVQNGLIALYAKCRRLGCARTVFE--GLPLPERTIVSWTAIVSAYAQNGEP 203

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EA+  F  M + +++PD + LV VL+A + L DL  G  IH  +        PD+ I  
Sbjct: 204 VEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLI-- 261

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           +L  MY KCG + +A+ +FD+M   N++ WN+MI+G    G  K+A+D+F  M    ++P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRP 321

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  ++   +++CA +G LE  +W+  Y+ ++    D FI +AL+DM+AKCG ++ A  VF
Sbjct: 322 DTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVF 381

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
                RDV  ++AMIVG  +HG+A +A+ ++  M + G+ P++VTF+G+L AC+H+G+V 
Sbjct: 382 DRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVR 441

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG   F  M+  + + PQ +HY C++DL GRAG + +A ++IK MP+ P   VWGALL A
Sbjct: 442 EGWWFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           CK H  VEL +   + L   +P   G Y+ ++N+Y++   W    ++R +MKE+ + K  
Sbjct: 501 CKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDV 560

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GCS VEV G    FR GDKSHP+  EI + ++ I  + K  G++
Sbjct: 561 GCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFV 604


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/524 (38%), Positives = 312/524 (59%), Gaps = 37/524 (7%)

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           Y + L  GL PN +T  Y+LKA    Q ++ G++VHA  ++T    + +V   L+  Y  
Sbjct: 79  YMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVA 138

Query: 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI 224
           CGL+    ++F   + P     LV WT +I+AYV + +P +A+  F  M +  L PD + 
Sbjct: 139 CGLVGKGRQVFDEMRQP----GLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVA 194

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           +  V+SAC  LGDL +   +H +I  +   +  D F+ + LI  Y +CG++  A + F E
Sbjct: 195 VSTVVSACGLLGDLGVAKAMHCFIEKS--GIEVDAFVSSTLISTYGECGSLDYAYRFFQE 252

Query: 285 MPVKN-------------------------------VVSWNSMIAGLTHRGQFKEALDIF 313
            P+KN                               VVSWNSMI G    GQ++EAL  F
Sbjct: 253 TPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWF 312

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             M+  G+ P+  TL+  L++CA+ G L+ G W+H Y+DKN +N DG + ++L+DMY+KC
Sbjct: 313 HEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKC 372

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G ID+A  +F     RD++++T+++ GLA+HG+  KAL  FS+M +  ++PD+VT VGVL
Sbjct: 373 GDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVL 432

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SAC+HAGL+++G  +F  M +V+ L P+ EHYG MVDL GR G ++EA DLI  MP+  +
Sbjct: 433 SACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEAN 492

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
             +WGA L AC++H  VEL E+    L+   P    A ++++N+Y+ + +W  ++ LRK+
Sbjct: 493 EIIWGAFLSACRVHNNVELGEVAARRLLGLXPRDPWARVMLSNMYAEEAKWDRSMGLRKE 552

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           +K++ +KK+PGCS +EV G  + F  GD SHP   EI  ++++I
Sbjct: 553 IKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYTEINSMVEKI 596



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 193/396 (48%), Gaps = 49/396 (12%)

Query: 31  LESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIIS---LSRGNEIENLSLQNPQVYL 85
           L S + V + ++ HA +++TG    +  +  L    ++   + +G ++ +  ++ P + L
Sbjct: 101 LVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFD-EMRQPGLVL 159

Query: 86  YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +  II+       P +A+ L+R M   GL P+   +  V+ AC     L V + +H +  
Sbjct: 160 WTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIE 219

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH---------------------------- 176
           K+ +  + +V +TL+  Y  CG +   ++ F                             
Sbjct: 220 KSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQ 279

Query: 177 -FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
            F+  P   RD+VSW ++I  + ++    EA+  F +M  + + P+ + L+  LSAC+  
Sbjct: 280 LFQSMP--DRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASH 337

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
           G L  G  IH Y+  N  N   D  + ++LIDMY KCG+I  A ++F+E   +++ +W S
Sbjct: 338 GALDTGAWIHAYVDKNDMN--RDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTS 395

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           ++ GL   G+ ++AL  F +M+   ++PDD T+V VL++CA+ G L+ G W    ++K  
Sbjct: 396 IVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEK-- 453

Query: 356 INTDGFIG-----NALVDMYAKCGRIDQAFGVFRSM 386
               G +        +VD+  + G + +A+ +   M
Sbjct: 454 --VFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGM 487



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 170/362 (46%), Gaps = 47/362 (12%)

Query: 190 WTTLIQAYVKMDYPTE--AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
           W T+I+  V+    T    +L +    +A LRP+G   + +L A     ++  G ++H  
Sbjct: 57  WNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHAS 116

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
           +    F  S   F+  AL+  Y+ CG +   R+VFDEM    +V W  +I         +
Sbjct: 117 VVRTGFACSE--FVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPE 174

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           +AL++FR M+ +GL PD   +  V+++C  +G L + K +H +++K+ I  D F+ + L+
Sbjct: 175 KALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLI 234

Query: 368 DMYAKCGRIDQAF-------------------------------GVFRSMKCRDVYSYTA 396
             Y +CG +D A+                                +F+SM  RDV S+ +
Sbjct: 235 STYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNS 294

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL-----D 451
           MI G A  G+  +AL  F EM   G+ P+ +T +  LSAC+  G ++ G          D
Sbjct: 295 MIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKND 354

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           M+R  +L         ++D++ + G I +A+ + +      D F W +++    +H + E
Sbjct: 355 MNRDGSLDSS------LIDMYSKCGDIDKAVQIFEE-STRRDLFTWTSIVCGLAMHGRGE 407

Query: 512 LA 513
            A
Sbjct: 408 KA 409



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 8/227 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+  + EM   G+ PN  TL   L AC    +L  G  +HAY  K  +  +  + ++L+
Sbjct: 307 EALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLI 366

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ CG I    ++F        +RDL +WT+++          +A+  F  M +A ++
Sbjct: 367 DMYSKCGDIDKAVQIF----EESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQ 422

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + +V VLSAC+  G L  G    + + +  F L P V  +  ++D+  + G +  A 
Sbjct: 423 PDDVTMVGVLSACAHAGLLDQGWWYFQSM-EKVFGLVPKVEHYGXMVDLLGRMGCLKEAY 481

Query: 280 KVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
            +   MP++ N + W + ++        +      RR+  LGL P D
Sbjct: 482 DLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRL--LGLXPRD 526



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 16/285 (5%)

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL--GLKPDDFTLVCVLN 333
           PSA    D     NV  WN+MI      G       +   MQGL  GL+P+  T + +L 
Sbjct: 43  PSAASRLD---CANVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLK 99

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +  +   ++ G+ VH  + +       F+  AL+  Y  CG + +   VF  M+   +  
Sbjct: 100 ALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVL 159

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG--LVEEGCKHFLD 451
           +T +I          KAL++F  M +VG+ PD V    V+SAC   G   V +    F++
Sbjct: 160 WTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIE 219

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
            S    ++        ++  +G  G +  A    +  P+  +  VW  ++     H  +E
Sbjct: 220 KS---GIEVDAFVSSTLISTYGECGSLDYAYRFFQETPM-KNIVVWNTMIHQSVEHNNLE 275

Query: 512 LAEIVMENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRKKMK 555
           L + + +++    P+ D  ++  M   ++   +++EAL    +M+
Sbjct: 276 LGKQLFQSM----PDRDVVSWNSMIGGFARIGQYQEALTWFHEME 316


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/593 (36%), Positives = 334/593 (56%), Gaps = 23/593 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIEN-------------LS 77
           L+   S+  LK  H+ +   G   H    L   II  S+  ++ +               
Sbjct: 32  LQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHGH 91

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
            Q P  +L N +++  +NA    EAI LY  M   G+  N +T P+VLK C        G
Sbjct: 92  TQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFG 151

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           + VH   ++T   S+++V   L+ +YA CG I   H++F         RD+V WT +I  
Sbjct: 152 EVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFD----RMLIRDVVCWTAMITL 207

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y + + P +A++ F  M +     D +  + V SA  +LGD  + I +H Y   N F   
Sbjct: 208 YEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGF--I 265

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            DV + N+++ MY KCGN+  AR VFD M  +N +SWNSM++G T  G+  +AL +F +M
Sbjct: 266 GDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQM 325

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           Q     P+  T + ++++C+ +G   LG+ +H ++  + ++ D  + NA++DMY KCG +
Sbjct: 326 QASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDL 385

Query: 377 DQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           D A  +F + +   RDV S+  +I G  +HG   +AL++FS M   G+EP+++TF  +LS
Sbjct: 386 DTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILS 445

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           ACSHAGL++EG K F DM+++ +++P+ +HY CMVD+ GRAG + EA  LIK +P  P  
Sbjct: 446 ACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSD 504

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            VWGALL AC+IH   EL EI   NL + EPE  G Y+LM+NIY++ N+WKE   +R+ M
Sbjct: 505 EVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNM 564

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K R +KK    S++E   E + F   D+S P   E+Y+ ++ +  + K  GY+
Sbjct: 565 KSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYV 617


>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
 gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
          Length = 597

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/494 (40%), Positives = 307/494 (62%), Gaps = 8/494 (1%)

Query: 115 PNTYTLPYVLKACWQ-SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
           P+  T P+ +K+  +    L  G Q+HA S+K    SN +V  +L+ LYA CG +    K
Sbjct: 72  PSHLTFPFAIKSASRLPDPLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQK 131

Query: 174 LF-HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
            F   RQ P      VSWT LI AY+      EAI        + +RPD    V VL+AC
Sbjct: 132 AFDEMRQPPST----VSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTAC 187

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           +++ DL  G ++  +       ++ +VF+  A +D+Y+KCG +  AR VFD+M  K+VV+
Sbjct: 188 ARVADLVTGEEV--WTAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVA 245

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W +M+ G    G  +EAL++F  MQ  G++PD +T+   L++C  +G L+LG+ V   L 
Sbjct: 246 WGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQ 305

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
            + +  +  +G AL+DMYAKCG   +A+ VF+ M+ RD+  + AMI+GL + G    A  
Sbjct: 306 WDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFA 365

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           +  +M + G+  ++ TF+G+L +C+H GLV++G ++F +M+++Y+++P+ EHYG MVDL 
Sbjct: 366 LVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLYHIRPRIEHYGIMVDLL 425

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
            RAGL++EA  LI+ MP+  +A VWGALLG CKIH   +LAE V++ L++ EP   G Y+
Sbjct: 426 SRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIHRNADLAEHVLKQLIQLEPWNSGNYV 485

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           +++NIYS+  RW++A KLR +MK + V+K P  S VE+ G+ +EF  GDKSHP + +IY 
Sbjct: 486 VLSNIYSNSGRWEDAAKLRLEMKAKGVEKVPASSWVELDGKVHEFHVGDKSHPLSDQIYA 545

Query: 593 LLDEIMHQSKNHGY 606
            LDE+  + K  GY
Sbjct: 546 KLDELGMEMKAMGY 559


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/532 (38%), Positives = 314/532 (59%), Gaps = 8/532 (1%)

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           LQ   +  ++ II  L     P EA++L++EM  + + PN  TL  +L AC     L++G
Sbjct: 390 LQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG 449

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           + +H +++K  + S++     L+ +YA CG   A    F+      + RD+V+W +LI  
Sbjct: 450 KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFN----RMSSRDIVTWNSLING 505

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y ++  P  AI  F+ +  + + PD   +V V+ AC+ L DL  G  IH  I    F   
Sbjct: 506 YAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFE-- 563

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
            D  + NALIDMY KCG++PSA  +F++    K+ V+WN +IA     G  KEA+  F +
Sbjct: 564 SDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQ 623

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+     P+  T V VL + A +     G   H  + +    ++  +GN+L+DMYAKCG+
Sbjct: 624 MRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQ 683

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +D +  +F  M  +D  S+ AM+ G A+HG   +A+ +FS M +  ++ D V+FV VLSA
Sbjct: 684 LDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSA 743

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           C HAGLVEEG K F  MS  Y+++P  EHY CMVDL GRAGL  E L  IK MP+ PDA 
Sbjct: 744 CRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAG 803

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           VWGALLG+C++H+ V+L E+ +++LV+ EP     ++++++IY+   RW +A K R KM 
Sbjct: 804 VWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMN 863

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +  +KKTPGCS VE+  + + FR GDKSHP+   ++ L + ++ + +  GY+
Sbjct: 864 DLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYV 915



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 139/501 (27%), Positives = 244/501 (48%), Gaps = 14/501 (2%)

Query: 7   VASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS 66
             + S +  +++    + LH    L S K +  L Q HA II +G   H +      + S
Sbjct: 15  ATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYS 74

Query: 67  LSRGNEIENL---SLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPY 122
           L    ++      S  NP   L+N +I+  + +    EA+ +Y  M+ KGL P+ YT  +
Sbjct: 75  LFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTF 134

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           VLKAC  + +L+ G   H    +  L  +V++   L+ +Y+  G +K   ++F       
Sbjct: 135 VLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVF----DKM 190

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            +RD+V+W  +I    + + P EA+  F  M    + P  + L+ +     KL ++ L  
Sbjct: 191 PKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCR 250

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            IH Y+    F+ +    + N LID+Y KCG++  AR+VFD+M  ++ VSW +M+AG  H
Sbjct: 251 SIHGYVFRRDFSSA----VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAH 306

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
            G F E L++F +M+   ++ +  + V    + A    LE GK +H    +  I++D  +
Sbjct: 307 NGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV 366

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
              L+ MYAKCG  ++A  +F  ++ RD+ +++A+I  L   G   +AL +F EM    +
Sbjct: 367 ATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKM 426

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
           +P+ VT + +L AC+   L++ G K     +   ++         +V ++ + G    AL
Sbjct: 427 KPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAAL 485

Query: 483 DLIKSMPLVPDAFVWGALLGA 503
                M    D   W +L+  
Sbjct: 486 TTFNRMS-SRDIVTWNSLING 505



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 229/470 (48%), Gaps = 15/470 (3%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTY 118
           +Y K+  L R  E+ +  +    V  +N +I  LS + +P EA+  +R M + G+ P++ 
Sbjct: 173 MYSKMGDLKRAREVFD-KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSV 231

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           +L  +     +  ++ + + +H Y  +    S V   N L+ LY+ CG +    ++F   
Sbjct: 232 SLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVS--NGLIDLYSKCGDVDVARRVFD-- 287

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                 +D VSW T++  Y       E +  F  M   N+R + +  V    A ++  DL
Sbjct: 288 --QMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDL 345

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G +IH        +   D+ +   L+ MY KCG    A+++F  +  +++V+W+++IA
Sbjct: 346 EKGKEIHGCALQQRID--SDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIA 403

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
            L   G  +EAL +F+ MQ   +KP+  TL+ +L +CA++  L+LGK +H +  K  +++
Sbjct: 404 ALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDS 463

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           D   G ALV MYAKCG    A   F  M  RD+ ++ ++I G A  G  + A+D+F ++ 
Sbjct: 464 DLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLR 523

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
              I PD  T VGV+ AC+    +++G C H L +   +      ++   ++D++ + G 
Sbjct: 524 LSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN--ALIDMYAKCGS 581

Query: 478 IREALDLIKSMPLVPDAFVWGALLGAC--KIHAKVELAEIVMENLVRFEP 525
           +  A  L        D   W  ++ A     HAK  ++      L  F P
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHP 631


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/584 (35%), Positives = 338/584 (57%), Gaps = 14/584 (2%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQ------NPQVY 84
           ++S+    QLKQ HA ++  G     +  L  K+I  S        + Q       PQ++
Sbjct: 28  IDSATHKAQLKQIHARLLVLG--LQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIF 85

Query: 85  LYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            +N II+  S  N  + A+ +Y  M +  + P+++T P++LKAC     L++G+ VHA  
Sbjct: 86  PWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQV 145

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
            +    ++V+V N L+ LYA C  + +   +F     P  +R +VSWT ++ AY +   P
Sbjct: 146 FRLGFDADVFVQNGLIALYAKCRRLGSARTVFE--GLPLPERTIVSWTAIVSAYAQNGEP 203

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EA+  F  M + +++PD + LV VL+A + L DL  G  IH  +      + PD+ I  
Sbjct: 204 MEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI-- 261

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           +L  MY KCG + +A+ +FD+M   N++ WN+MI+G    G  +EA+D+F  M    ++P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  ++   +++CA +G LE  + ++ Y+ ++    D FI +AL+DM+AKCG ++ A  VF
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVF 381

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
                RDV  ++AMIVG  +HG+A +A+ ++  M + G+ P++VTF+G+L AC+H+G+V 
Sbjct: 382 DRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVR 441

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG   F  M+  + + PQ +HY C++DL GRAG + +A ++IK MP+ P   VWGALL A
Sbjct: 442 EGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           CK H  VEL E   + L   +P   G Y+ ++N+Y++   W    ++R +MKE+ + K  
Sbjct: 501 CKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDV 560

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GCS VEV G    FR GDKSHP+  EI + ++ I  + K  G++
Sbjct: 561 GCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFV 604


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/576 (36%), Positives = 331/576 (57%), Gaps = 14/576 (2%)

Query: 37   VGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQ 91
            VG+ K+ H  + K G   + T ++   I +  +  E+++       L +  V  +N +I 
Sbjct: 569  VGECKRIHGCVYKLGFGSYNT-VVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMIS 627

Query: 92   -CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
             C+ N     A+  + +MLI  +  +  TL   + AC    SL +G+ +H   +K     
Sbjct: 628  GCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSR 687

Query: 151  NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
             V   NTL+ +Y+ CG +    + F        Q+ +VSWT+LI AYV+     +AI  F
Sbjct: 688  EVMFNNTLLDMYSKCGNLNDAIQAFE----KMGQKTVVSWTSLIAAYVREGLYDDAIRLF 743

Query: 211  FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
            ++M    + PD   +  VL AC+    L  G  +H YI  N  N++  + + NAL+DMY 
Sbjct: 744  YEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKN--NMALCLPVSNALMDMYA 801

Query: 271  KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
            KCG++  A  VF ++PVK++VSWN+MI G +      EAL +F  MQ    +PD  T+ C
Sbjct: 802  KCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMAC 860

Query: 331  VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
            +L +C ++  LE+G+ +H  + +N  +++  + NAL+DMY KCG +  A  +F  +  +D
Sbjct: 861  LLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKD 920

Query: 391  VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
            + ++T MI G  +HG   +A+  F +M   GI+PDE+TF  +L ACSH+GL+ EG   F 
Sbjct: 921  LITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFN 980

Query: 451  DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
             M    N++P+ EHY CMVDL  R G + +A +LI++MP+ PDA +WGALL  C+IH  V
Sbjct: 981  SMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDV 1040

Query: 511  ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
            ELAE V E++   EP+  G Y+L+ NIY+   +W+E  KLR+++ +R +KK+PGCS +EV
Sbjct: 1041 ELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEV 1100

Query: 571  YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             G+F  F   D +HP+   I+ LL+ +  + KN G+
Sbjct: 1101 QGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGH 1136



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 145/483 (30%), Positives = 243/483 (50%), Gaps = 21/483 (4%)

Query: 35  KSVGQLKQFHAFIIKTGSPQH-----QTQILYDKIISLSRGNEIENLSLQNPQVYLYNFI 89
           K + + K  H+ I   G P       +   +Y    +L  G  I +  L + +V+L+N +
Sbjct: 465 KCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLM 524

Query: 90  IQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ--QVHAYSMKT 146
           +   +   +  E+I L+++M   G+  N+YT   +LK C+ +   RVG+  ++H    K 
Sbjct: 525 MSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILK-CFATLG-RVGECKRIHGCVYKL 582

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
              S   V N+L+  Y   G + + HKLF         RD+VSW ++I   V   +   A
Sbjct: 583 GFGSYNTVVNSLIATYFKSGEVDSAHKLF----DELGDRDVVSWNSMISGCVMNGFSHSA 638

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F  M    +  D   LV  ++AC+ +G LSLG  +H       F  S +V  +N L+
Sbjct: 639 LEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACF--SREVMFNNTLL 696

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           DMY KCGN+  A + F++M  K VVSW S+IA     G + +A+ +F  M+  G+ PD +
Sbjct: 697 DMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVY 756

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           ++  VL++CA    L+ G+ VH Y+ KN++     + NAL+DMYAKCG +++A+ VF  +
Sbjct: 757 SMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQI 816

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             +D+ S+  MI G + +    +AL +F+EM Q    PD +T   +L AC     +E G 
Sbjct: 817 PVKDIVSWNTMIGGYSKNSLPNEALKLFAEM-QKESRPDGITMACLLPACGSLAALEIGR 875

Query: 447 K-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505
             H   +   Y+ +    +   ++D++ + G +  A  L   +P   D   W  ++  C 
Sbjct: 876 GIHGCILRNGYSSELHVAN--ALIDMYVKCGSLVHARLLFDMIP-EKDLITWTVMISGCG 932

Query: 506 IHA 508
           +H 
Sbjct: 933 MHG 935



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 165/356 (46%), Gaps = 41/356 (11%)

Query: 175 FHFRQHPQAQRDLVSW------TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI- 227
           F F Q P  +  L S+      +T + A+ K+D  T+ I  F ++   +LR    +L + 
Sbjct: 388 FIFFQQPSRKYFLSSYLDVPRSSTRVGAFAKLDENTK-ICKFCEV--GDLRNAVELLRMS 444

Query: 228 ------------VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
                       +L  C++   L  G  +H  I+ N   +  +  +   L+ MY+ CG +
Sbjct: 445 QKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSN--GIPIEGVLGAKLVFMYVSCGAL 502

Query: 276 PSARKVFDEMPVKN-VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
              R++FD +   N V  WN M++     G ++E++ +F++MQ LG+  + +T  C+L  
Sbjct: 503 REGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKC 562

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
            A +G +   K +H  + K    +   + N+L+  Y K G +D A  +F  +  RDV S+
Sbjct: 563 FATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSW 622

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG-------LVEEGCK 447
            +MI G  ++G +  AL+ F +M  + +  D  T V  ++AC++ G       L  +G K
Sbjct: 623 NSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVK 682

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
                  ++N          ++D++ + G + +A+   + M        W +L+ A
Sbjct: 683 ACFSREVMFN--------NTLLDMYSKCGNLNDAIQAFEKMGQ-KTVVSWTSLIAA 729


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 349/606 (57%), Gaps = 52/606 (8%)

Query: 16  INTFQQLSLLHQSPRL---ESSKSVGQLKQFHAFIIKTGSPQH---QTQILYDKIISLSR 69
           IN     S + ++P L   E  KS+ QLKQ  A ++ TG  ++    ++++     +LS 
Sbjct: 46  INWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLV--AFCALSE 103

Query: 70  GNEIENLS-----LQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLL-PNTYTLPY 122
             E++  +     ++   V+ +N  I+    +  +E    LY+ ML+ G L P+ +T P 
Sbjct: 104 SKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPL 163

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK C    S  +G  V  + +K     +++V N  + +   CG +   + +F+  +   
Sbjct: 164 LLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSR--- 220

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
             RDLV+W ++I   VK     EAI  + +M    +RP+ + ++ ++S+CS++ DL+LG 
Sbjct: 221 -VRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGK 279

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM----------------- 285
           + H YI ++    +  + + NAL+DMY+KCG + +AR +FD M                 
Sbjct: 280 EFHCYIKEHGLEFT--IPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYAR 337

Query: 286 --------------PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
                         P K+VV WN++I+G     Q KEAL +F  MQ   ++PD  T+V  
Sbjct: 338 FGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNC 397

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L++C+ +G L++G W+H Y++++ ++ D  +G ALVDMYAKCG I +A  VF  +  R+ 
Sbjct: 398 LSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNC 457

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            ++TA+I GLA+HG A  AL  FS+M  +GI PDE+TF+GVLSAC H GLVEEG K+F +
Sbjct: 458 LTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSE 517

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           MS  +N+ P+ +HY CMVDL GRAG + EA +L+K+MP+  DA V GAL  AC+++  V+
Sbjct: 518 MSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQ 577

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           + E     L+  +P+  G Y+L+ ++YS    WKEA   RK M ++ V+KTPGCSLVE+ 
Sbjct: 578 IGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEIN 637

Query: 572 GEFYEF 577
           G  +EF
Sbjct: 638 GIVHEF 643


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/530 (37%), Positives = 316/530 (59%), Gaps = 7/530 (1%)

Query: 79  QNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           Q P ++LYN +I    N +   E + L+  +   GL  + +T P VLKAC ++ S ++G 
Sbjct: 72  QFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGI 131

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            +H+  +K     +V    +L+ +Y+  G +   HKLF         R +V+WT L   Y
Sbjct: 132 DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFD----EIPDRSVVTWTALFSGY 187

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
                  EAI  F  M +  ++PD   +V VLSAC  +GDL  G  I +Y+ +    +  
Sbjct: 188 TTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEE--MEMQK 245

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           + F+   L+++Y KCG +  AR VFD M  K++V+W++MI G       KE +++F +M 
Sbjct: 246 NSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQML 305

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              LKPD F++V  L+SCA++G L+LG+W  + +D++   T+ F+ NAL+DMYAKCG + 
Sbjct: 306 QENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMA 365

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
           + F VF+ MK +D+    A I GLA +G    +  +F +  ++GI PD  TF+G+L  C 
Sbjct: 366 RGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCV 425

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAGL+++G + F  +S VY L+   EHYGCMVDL+GRAG++ +A  LI  MP+ P+A VW
Sbjct: 426 HAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVW 485

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GALL  C++    +LAE V++ L+  EP   G Y+ ++NIYS   RW EA ++R  M ++
Sbjct: 486 GALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKK 545

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +KK PG S +E+ G+ +EF   DKSHP + +IY  L+++ ++ +  G++
Sbjct: 546 GMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFV 595



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 20/292 (6%)

Query: 223 MILVIVLSACSKLGDLSLGI----------KIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +V V SA SK+  +   I          +IH  + ++H  L  D F+ N L+   L  
Sbjct: 1   MSIVTVPSATSKVQQIKTLISVACTVNHLKQIHVSLINHH--LHHDTFLVNLLLKRTLFF 58

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
                +  +F      N+  +NS+I G  +   F E LD+F  ++  GL    FT   VL
Sbjct: 59  RQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVL 118

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +C      +LG  +H+ + K   N D     +L+ +Y+  GR++ A  +F  +  R V 
Sbjct: 119 KACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVV 178

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG---CKHF 449
           ++TA+  G    G+  +A+D+F +M ++G++PD    V VLSAC H G ++ G    K+ 
Sbjct: 179 TWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYM 238

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
            +M    N   +T     +V+L+ + G + +A  +  SM +  D   W  ++
Sbjct: 239 EEMEMQKNSFVRTT----LVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMI 285



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 111/241 (46%), Gaps = 6/241 (2%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           LY K   + +   + +  ++   V     I    SN+ P E I L+ +ML + L P+ ++
Sbjct: 256 LYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           +   L +C    +L +G+   +   +   L+N+++ N L+ +YA CG +    ++F    
Sbjct: 316 IVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVF---- 371

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
               ++D+V     I    K  +   +   F    +  + PDG   + +L  C   G + 
Sbjct: 372 KEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQ 431

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIA 298
            G++    I+   + L   V  +  ++D++ + G +  A ++  +MP++ N + W ++++
Sbjct: 432 DGLRFFNAIS-CVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS 490

Query: 299 G 299
           G
Sbjct: 491 G 491


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/551 (38%), Positives = 318/551 (57%), Gaps = 41/551 (7%)

Query: 80  NPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +P   +YN I +   N++ P EA+ L+R ML +G+LPN +TLP+V+KAC ++Q+      
Sbjct: 7   DPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAWDNALA 66

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           VH  ++K   +  V+V N L+  YA  G +    + F       A R++VSW ++I  Y 
Sbjct: 67  VHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFD----EMAGRNVVSWNSMIGGYA 122

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP- 257
           +     EA   F +M +     D   L  +L ACS+ G+L  G  +H  +     + SP 
Sbjct: 123 QAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLML---VSGSPV 179

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVK----------------------------- 288
           D+ +  AL+DMY KCG++  AR+ F+ MP+K                             
Sbjct: 180 DLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMP 239

Query: 289 --NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
             N VSWN+MI+    RGQ+ EALD++++MQ  G  PD+ TLV VL++C  IG L +GK 
Sbjct: 240 ERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKM 299

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           VH Y+  N  N D  + N+L+DMYAKCG++D A  +FR M  R+V S+  +I GLA+HG+
Sbjct: 300 VHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGR 359

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
           A  A+  F  M +    PD +TFV +LS+CSH GL+E G  +F  M  VYN++ + EHY 
Sbjct: 360 ALDAITFFRSMVR-NTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYA 418

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CMVDL GR G + +A+ LIK MP+ PD  VWGALLGAC+IH  V++ + V++ L+  E  
Sbjct: 419 CMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGI 478

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
             G ++L++N+    N+W++  +LRK MKER  +K  G S +E+    +EF   D  H  
Sbjct: 479 SGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINNSIHEFGVEDIRHES 538

Query: 587 TLEIYKLLDEI 597
           + EIY ++D++
Sbjct: 539 SSEIYAVVDQL 549



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 15/280 (5%)

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           +FD +   + V +N++     +    +EAL + R M   G+ P++FTL  V+ +C     
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
            +    VH    K       F+ NAL+  YA  G +  +   F  M  R+V S+ +MI G
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG----CKHFLDMSRVY 456
            A  G   +A  +F EM + G   DE T   +L ACS  G +E G    C   +  S V 
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVD 180

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            +       G +VD++ + G +  A    + MP +     W ++L A   H  V+ A   
Sbjct: 181 LILG-----GALVDMYSKCGDLCMARRCFEMMP-IKSVVSWTSMLCAQTKHGSVDAARCW 234

Query: 517 MENLVRFEPEGDG-AYILMTNIYSSKNRWKEALKLRKKMK 555
            +++    PE +  ++  M + Y  + ++ EAL L K+M+
Sbjct: 235 FDHM----PERNTVSWNTMISCYVQRGQYHEALDLYKQMQ 270


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/617 (36%), Positives = 343/617 (55%), Gaps = 27/617 (4%)

Query: 8   ASGSRYNDINTFQQLSLLHQSPRLESSKS----------VGQLKQFHAFIIKTGSPQHQT 57
            SG+    IN F+Q+  L   P   +  S          V + +Q H  I K G   + T
Sbjct: 228 GSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNT 287

Query: 58  QILYDKIISLS-RGNEIENL-----SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLI 110
            +  + +IS    G ++         L +  V  +N +I   + N      I ++ +ML+
Sbjct: 288 VV--NSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLV 345

Query: 111 KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN-TLMRLYAVCGLIK 169
            G+  +  T+  V  AC    +L +G+ +H+YS+K A L     FN TL+ +Y+ CG + 
Sbjct: 346 FGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLN 405

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
           +  ++F        ++ +VSWT++I  YV+      AI  F +M    + PD   +  +L
Sbjct: 406 SAIRVFE----RMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSIL 461

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           +AC+  G+L  G  +H YI +N  NL  + F+ NAL DMY KCG++  A  VF  M  K+
Sbjct: 462 NACAINGNLKSGKIVHDYIREN--NLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKD 519

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           V+SWN+MI G T      EAL +F  MQ    KPD  T+ C+L +CA++  L+ G+ +H 
Sbjct: 520 VISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHG 578

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           Y  +N  + D ++ NA+VDMY KCG +  A  +F  +  +D+ S+T MI G  +HG   +
Sbjct: 579 YALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSE 638

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           A++ F++M   GIEPDEV+F+ +L ACSH+GL++EG K F  M +   ++P  EHY CMV
Sbjct: 639 AINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMV 698

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL  R G + +A   IK+MP+ PDA +WGALL  C+IH  V+LAE V E +   EPE  G
Sbjct: 699 DLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTG 758

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y+L+ NIY+   +W+E  KLRKK+ +R +KK PGCS +E+ G+   F  GD S P+  +
Sbjct: 759 YYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKK 818

Query: 590 IYKLLDEIMHQSKNHGY 606
           I  LL  +  + K  GY
Sbjct: 819 IELLLKRLRSKMKEEGY 835



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 189/382 (49%), Gaps = 9/382 (2%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+ C + +S+R G++V +    + ++ +  +   L+ +Y  CG +K    +F       
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVF----DKL 211

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
           ++  +  W  +I  Y       E+I  F  M +  ++P+      +L   + +  +  G 
Sbjct: 212 SESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGR 271

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           ++H  I    FN    V   N+LI  Y     +  A+K+FDE+  ++V+SWNSMI+G   
Sbjct: 272 QVHGLICKLGFNSYNTVV--NSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVK 329

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY-LDKNHINTDGF 361
            G     ++IF +M   G+  D  T+V V  +CANIG L LGK +H+Y +    ++ +  
Sbjct: 330 NGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVR 389

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
             N L+DMY+KCG ++ A  VF  M  + V S+T+MI G    G +  A+ +F EM   G
Sbjct: 390 FNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRG 449

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           + PD      +L+AC+  G ++ G K   D  R  NL+  +     + D++ + G +++A
Sbjct: 450 VVPDVYAVTSILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDA 508

Query: 482 LDLIKSMPLVPDAFVWGALLGA 503
            D+   M    D   W  ++G 
Sbjct: 509 HDVFSHMK-KKDVISWNTMIGG 529


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/522 (38%), Positives = 305/522 (58%), Gaps = 60/522 (11%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVC----GLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           +Q+H+ ++KT ++ N  + N ++     C    G +    +LF     P     + SW  
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKILSF--CCSREFGDMCYARQLFDTIPEPS----VFSWNI 84

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           + + Y ++  P   +  + +M + N++PD      +    ++   L LG ++H ++    
Sbjct: 85  MFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVK-- 142

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFD----------------------------- 283
           + L  +VF HNALI+MY  CG I  AR +FD                             
Sbjct: 143 YGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTA 202

Query: 284 -------------------EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
                              +MP ++ VSW +MI G      +KEAL +FR MQ   +KPD
Sbjct: 203 IVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPD 262

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
           +FT+V VL +CA +G LELG+W+ TY+DKN +  D F+GNAL+DMY KCG ++ A  +F 
Sbjct: 263 EFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFN 322

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
           ++  RD +++TAM+VGLAI+G   +AL++FS+M +  + PDEVT+VGVLSAC+H G+V+E
Sbjct: 323 TLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDE 382

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G K F  M+  + ++P   HYGCMVDL G+AG ++EA ++IK+MP+ P++ VWGALLGAC
Sbjct: 383 GKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGAC 442

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           +IH   E+AE  +E ++  EP     Y+L  NIY++ N+W +  +LR+ M +R +KKTPG
Sbjct: 443 RIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPG 502

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           CSL+E+ G  +EF  GD+SHP+T EIY  L+++    K  GY
Sbjct: 503 CSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGY 544



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 229/465 (49%), Gaps = 76/465 (16%)

Query: 20  QQLSLLHQSPRL---ESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEI 73
            Q S + ++P L   E+ KS+  LKQ H+  IKTG   +P     I+ +KI+S     E 
Sbjct: 7   SQSSPVTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNP-----IIQNKILSFCCSREF 61

Query: 74  ENL--------SLQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVL 124
            ++        ++  P V+ +N + +  S  A P   ++LY EML + + P+ YT P++ 
Sbjct: 62  GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLF 121

Query: 125 KACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ----- 179
           K   +S +L++G+++H + +K  L SNV+  N L+ +Y++CGLI     +F         
Sbjct: 122 KGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVV 181

Query: 180 ---------------------------------------HPQAQRDLVSWTTLIQAYVKM 200
                                                  H   +RD VSWT +I  Y+++
Sbjct: 182 TWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRL 241

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           +   EA++ F +M  + ++PD   +V VL+AC++LG L LG  I  YI  N   +  D F
Sbjct: 242 NCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKN--KVKNDTF 299

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           + NALIDMY KCGN+  A  +F+ +P ++  +W +M+ GL   G  +EAL++F +M    
Sbjct: 300 VGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKAS 359

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQA 379
           + PD+ T V VL++C + G ++ GK     +   H I  +      +VD+  K G + +A
Sbjct: 360 VTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEA 419

Query: 380 FGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423
             + ++M  + +   + A++    IH  A        EM++  IE
Sbjct: 420 HEIIKNMPMKPNSIVWGALLGACRIHKDA--------EMAERAIE 456


>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/485 (40%), Positives = 299/485 (61%), Gaps = 7/485 (1%)

Query: 112 GLLP-NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170
           G +P + Y+L   L    +  S+ VG Q+HA S+K  L S+ +V NTL+ +Y+ C     
Sbjct: 87  GYMPIDNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPST 146

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
              +      P+   D VSW T+I  Y+    P +A+ +F  M +  +  D + L+  L 
Sbjct: 147 ARSVLD--SAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALV 204

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           AC++   + +G   H  +  N F +  + ++ ++LI MY KCG +  AR++FD MP +N 
Sbjct: 205 ACARTCMMKVGKLCHALLVTNGFEI--NCYMGSSLISMYAKCGQVEDARRIFDGMPDRNA 262

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           V W SMI+G T  GQ KEA+ +FR MQ  G+K DD T+  V++SC  +G L+LG++VH Y
Sbjct: 263 VCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAY 322

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
            D + +  D  + N+L+DMY+KCG I +A+ +F  M  RD +S+T +I+G A +G + +A
Sbjct: 323 CDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWT-VIMGFAANGLSGEA 381

Query: 411 LDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           LD+F++M + G + P+E+TF+GVL++CSH GLVE+G +HF  MS +Y + P+ EHYGCMV
Sbjct: 382 LDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMV 441

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL GRA L+ EA   IK MP+ PDA +W +LL AC+   +V LAE V E +   EP   G
Sbjct: 442 DLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCG 501

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
             +L++ +Y++ +RW +A K+R  +   +  K PGCS +EV G  +EF  GD+SH +T  
Sbjct: 502 GDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDGCVHEFFAGDESHFETEA 561

Query: 590 IYKLL 594
           IY  L
Sbjct: 562 IYSTL 566


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/592 (38%), Positives = 343/592 (57%), Gaps = 30/592 (5%)

Query: 20  QQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS---LSRGNEIENL 76
           Q+LS LH+   L       Q+KQ HA I+K  S  H    +  K+IS   L R   +   
Sbjct: 22  QKLSDLHKCTNLN------QVKQLHAQILK--SNLHVDLFVVPKLISAFSLCRQMLLATN 73

Query: 77  S---LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQS 132
           +   +Q P V+LYN +I+  S N+ P +A A +  M   G   + +T P++LK C  +  
Sbjct: 74  AFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVW 133

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL--IKAVHKLFHFRQHPQAQRDLVSW 190
           L V + VHA   K   +S+V+V N+L+  Y+ CG   I A  KLF       A+RD+VSW
Sbjct: 134 LPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLF---VSMGARRDVVSW 190

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
            ++I    K     EA   F +M +     DG+    +L    K+G +    K+   + +
Sbjct: 191 NSMISGLAKGGLYEEARKVFDEMPE----KDGISWNTMLDGYVKVGKMDDAFKLFDEMPE 246

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
                  +V   + ++  Y K G++  AR +FD+MPVKN+VSW  +++G   +G  +EA+
Sbjct: 247 R------NVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAI 300

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
            +F +M+   LK D+ T++ +L +CA  G L LG+ +H  +  N+      I NALVDMY
Sbjct: 301 SLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMY 360

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           AKCGR++ A+ VF  +K +DV S+ AM+ GLA+HG   KAL++F  M + G  P++VT +
Sbjct: 361 AKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMI 420

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
           GVL AC+HAGL+++G ++F  M R Y L P+ EHYGCMVDL GR G + EA+ LI++MP+
Sbjct: 421 GVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPM 480

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            P+A +WG LLGAC++H  VELA  V+++LV  EP   G + +++NIY++   W      
Sbjct: 481 APNAIIWGTLLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANT 540

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           R +M+    KK  G S +EV  E +EF   D+SHPK+  IY++++ + H+ K
Sbjct: 541 RLRMRSIGTKKPSGASSIEVNNEVHEFTVFDRSHPKSDNIYQVINGLRHELK 592


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/539 (38%), Positives = 307/539 (56%), Gaps = 37/539 (6%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA++L+ EM+  G+ PN+ T+  V+ AC + Q L++G+QV     +  L  N  + N L+
Sbjct: 223 EAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALV 282

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y  CG I    K+F         ++LV + T++  YV+     E +    +M +   R
Sbjct: 283 DMYMKCGAIDKARKIFD----ECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPR 338

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG------ 273
           PD + ++  +SACS+L D+S G   H Y+  N      +V   NA+I+MY+KCG      
Sbjct: 339 PDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVC--NAIINMYMKCGKQEMAC 396

Query: 274 -------------------------NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
                                    ++ SA K+F  MP  ++VSWN+MI  L     FKE
Sbjct: 397 RVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKE 456

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A+++FR MQ  G+  D  T+V V ++C  +G L+L KW+H Y+ K  I+ D  +G ALVD
Sbjct: 457 AIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVD 516

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           M+A+CG    A  VF  M  RDV ++TA I  +A+ G    A+++F EM Q GI+PD V 
Sbjct: 517 MFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVV 576

Query: 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
           FV +L+A SH GLVE+G   F  M  +Y + PQ  HYGCMVDL GRAGL+ EAL LI SM
Sbjct: 577 FVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSM 636

Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548
            + P+  +WG+LL AC++H  V++A    E +   +PE  G ++L++NIY+S  RW +  
Sbjct: 637 QMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVA 696

Query: 549 KLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K+R  +KE+   K PG S +E+ G+ +EF  GD+SHP+   I  +L EI  + ++ GY+
Sbjct: 697 KVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYV 755



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 163/556 (29%), Positives = 278/556 (50%), Gaps = 74/556 (13%)

Query: 2   ASPLTVASGSRYNDINTFQQLSLLHQSP--RLESSKSVGQLKQFHAFIIKTGSPQHQTQI 59
           A+P +VA  ++    N  + L+    SP    +  K++ +LKQ H+ I K G   H    
Sbjct: 13  ATPTSVALPNQ----NELKILTKHRSSPTGSFKKCKTMTELKQLHSQITKNGLNHHPLS- 67

Query: 60  LYDKIISLSRGNEIENLSLQNPQV-------------YLYNFIIQCLSNAN-PLEAIALY 105
           L + I S +     E+L      +             Y+++ +I+  S      +AI ++
Sbjct: 68  LTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVF 127

Query: 106 REMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC 165
           R+++  G +P+ +T P+VL AC +S +L  G QVH   +K     +++V N+L+  Y  C
Sbjct: 128 RQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGEC 187

Query: 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
           G I  + ++F       ++R++VSWT+LI  Y K     EA+  FF+M +  +RP+ + +
Sbjct: 188 GEIDCMRRVFD----KMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTM 243

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
           V V+SAC+KL DL LG ++   I +    L  +  + NAL+DMY+KCG I  ARK+FDE 
Sbjct: 244 VGVISACAKLQDLQLGEQVCTCIGE--LELEVNALMVNALVDMYMKCGAIDKARKIFDEC 301

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             KN+V +N++++    +G  +E L +   M   G +PD  T++  +++C+ +  +  GK
Sbjct: 302 VDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGK 361

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
           W H Y+ +N +     + NA+++MY KCG+ + A  VF  M  +   S+ ++I G   +G
Sbjct: 362 WCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNG 421

Query: 406 ---KAWK----------------------------ALDIFSEMSQVGIEPDEVTFVGVLS 434
               AWK                            A+++F  M   GI  D+VT VGV S
Sbjct: 422 DMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVAS 481

Query: 435 ACSHAGLVEEGCKHFLDMSRVYN--LQPQTEHYG-----CMVDLFGRAGLIREALDLIKS 487
           AC + G         LD+++  +  ++ +  H+       +VD+F R G  + A+ +   
Sbjct: 482 ACGYLGA--------LDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNK 533

Query: 488 MPLVPDAFVWGALLGA 503
           M +  D   W A +GA
Sbjct: 534 M-VKRDVSAWTAAIGA 548


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 338/584 (57%), Gaps = 14/584 (2%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQ------NPQVY 84
           ++S+    QLKQ HA ++  G     +  L  K+I  S        + Q       PQ++
Sbjct: 28  IDSATHKAQLKQIHARLLVLG--LQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIF 85

Query: 85  LYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            +N II+  S  N  + A+ +Y  M +  + P+++T P++LKAC     L++G+ VHA  
Sbjct: 86  PWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQV 145

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
            +    ++V+V N L+ LYA C  + +   +F     P  +R +VSWT ++ AY +   P
Sbjct: 146 FRLGFDADVFVQNGLIALYAKCRRLGSARTVF--EGLPLPERTIVSWTAIVSAYAQNGEP 203

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EA+  F  M + +++PD + LV VL+A + L DL  G  IH  +      + PD+ I  
Sbjct: 204 MEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI-- 261

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           +L  MY KCG + +A+ +FD+M   N++ WN+MI+G    G  +EA+D+F  M    ++P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  ++   +++CA +G LE  + ++ Y+ ++    D FI +AL+DM+AKCG ++ A  VF
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVF 381

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
                RDV  ++AMIVG  +HG+A +A+ ++  M + G+ P++VTF+G+L AC+H+G+V 
Sbjct: 382 DRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVR 441

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG   F ++   + + PQ +HY C++DL GRAG + +A ++IK MP+ P   VWGALL A
Sbjct: 442 EGW-WFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           CK H  VEL E   + L   +P   G Y+ ++N+Y++   W    ++R +MKE+ + K  
Sbjct: 501 CKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDV 560

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GCS VEV G    FR GDKSHP+  EI + ++ I  + K  G++
Sbjct: 561 GCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFV 604


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/522 (39%), Positives = 310/522 (59%), Gaps = 16/522 (3%)

Query: 86  YNFIIQCLSNA-NPLEAIALYREMLIK-----GLLPNTYTLPYVLKACWQ-SQSLRVGQQ 138
           +N +I  L++A +P  A   +  +L+      G  P+ YTLP  LKAC +    LR G Q
Sbjct: 80  FNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQ 139

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
            HA + K   L  V V N L+  Y  CG      K+F       A+RD+VSWT L+ A+ 
Sbjct: 140 AHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFD----EMAERDVVSWTALLSAFT 195

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +     EA+    +M   ++ P+ + L  VL AC  LG    G  +H +       L  +
Sbjct: 196 RGGMFMEALGVLAEM---DVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKEL--N 250

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           + + NAL+DMY+KC  +  AR+VFD +  +++VSW  MI+GL    +  EAL++F  MQ 
Sbjct: 251 LIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQI 310

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G+KPD   L  VL++CA++G LE G+WVH Y+++  I  D  +G ++VDMY KCG +D 
Sbjct: 311 SGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDT 370

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  +F+ M  ++V S+ A+I G A+HG+  +ALD F  M   G+ P+EVTF+ VL AC H
Sbjct: 371 AVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCH 430

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           +GLV+EG + F  M++ Y L P  +HYGCMVDL GRAGLI+EA D+IK+MP+ P  F W 
Sbjct: 431 SGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWV 490

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
            LL AC+ H +++ ++ ++ ++   E  G+G Y+L++N+Y+  +RW +  K R  M E+ 
Sbjct: 491 TLLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAVSDRWADVGKARGFMNEKG 550

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
           ++K PG S++EV G+  EF  G ++H    ++  +L  +M Q
Sbjct: 551 MQKEPGSSVIEVNGKTCEFLVGQQNHLYMDDVRAMLSILMKQ 592


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 353/611 (57%), Gaps = 55/611 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL----SRGN----EIENLSLQNPQ 82
           L+S +S+  L Q HA I + G   +   +   KI+      SRG+    E     +Q+P 
Sbjct: 23  LQSCESMAHLTQIHAKIFRVGLQDNMDTLT--KIVLFCTDPSRGSIRYAERVLGFVQSPC 80

Query: 83  VYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           + +YN +I+ ++ + N  + + L+ E+  +GL P+ +TLP V KA      +  G++VH 
Sbjct: 81  LVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHG 140

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           Y +K+    +  V N++M +Y   G ++   K+F   + P+  RD+VSW  LI +YV   
Sbjct: 141 YVVKSGF--DACVCNSVMGMYGALGKMEVAKKVFD--EIPE--RDVVSWNVLISSYVGHR 194

Query: 202 YPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
              +AI  F  M  ++NL+ D   +V  LSACS L +  +G +IHRY+ D    ++    
Sbjct: 195 KFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYV-DAELEMTTK-- 251

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ--------------- 305
           I NAL+DMY KCG +  AR +FDEM  KNV+ W SM++G    G                
Sbjct: 252 IGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRD 311

Query: 306 ----------------FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
                           F EAL +FR+MQ   L+PD+F LV +L  CA  G LE GKW+H 
Sbjct: 312 IVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHG 371

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           Y+ +N I  D  +G ALVD+YAKCG +++A  VF  MK RD  S+T++I GLA++G   K
Sbjct: 372 YIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSK 431

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           ALD FS+M + G  PD++TF+GVL+AC+H GLVEEG ++F  M++ Y +QP++EHY C++
Sbjct: 432 ALDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLI 491

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFV---WGALLGACKIHAKVELAEIVMENLVRFEPE 526
           DL  RAGL+ EA  L++ +P+     V   + +LL AC+ +  ++++E V   L R E +
Sbjct: 492 DLLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVK 551

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
               + L+ ++Y+S NRW++   +R+KMKE  ++K PGCS +EV G  +EF  G  SH +
Sbjct: 552 DSSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSIEVNGVLHEFMVGGPSHME 611

Query: 587 TLEIYKLLDEI 597
             +I+ +L ++
Sbjct: 612 MDDIHSVLGQV 622


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/530 (37%), Positives = 316/530 (59%), Gaps = 7/530 (1%)

Query: 79  QNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           Q P ++LYN +I    N +   E + L+  +   GL  + +T P VLKAC ++ + ++G 
Sbjct: 72  QFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGI 131

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            +H+  +K     +V    +L+ +Y+  G +   HK+F   + P+  R +V+WT L   Y
Sbjct: 132 DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVF--EEIPE--RSVVTWTALFSGY 187

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
                  EAI  F  M +  +RPD   +V VLSAC  +GDL  G  I +++ +    +  
Sbjct: 188 TTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEE--MEMQK 245

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           + F+   L+++Y KCG +  AR VFD M  K++V+W++MI G       KE ++ F +M 
Sbjct: 246 NSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQML 305

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              LKPD F++V  L+SCA++G L+LG+W  + +D++   T+ F+ NAL+DMYAKCG + 
Sbjct: 306 QENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMA 365

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
           + F VF+ MK +D+    A I GLA +G    +  +F +  ++GI PD  TF+G+L  C 
Sbjct: 366 RGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCV 425

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAGL+++G + F  +S VY L+   EHYGCMVDL+GRAG++ +A  LI  MP+ P+A VW
Sbjct: 426 HAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVW 485

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GALL  C++    +LAE V++ L+  EP   G Y+ ++NIYS   RW EA ++R  M  +
Sbjct: 486 GALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRK 545

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +KK PG S +E+ G  +EF   DKSHP + +IY  L+++ ++ +  G++
Sbjct: 546 GMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFV 595



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 16/290 (5%)

Query: 223 MILVIVLSACSKLGDLSLGIKI--------HRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           M +V V S+ SK+  +   I +          +++  H +L  D F+ N L+   L    
Sbjct: 1   MSIVTVPSSTSKVQQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQ 60

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
              +  +F      N+  +N++I G  +   F E LD+F  ++  GL    FT   VL +
Sbjct: 61  THYSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKA 120

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           C      +LG  +H+ + K   N D     +L+ +Y+  GR++ A  VF  +  R V ++
Sbjct: 121 CTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTW 180

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG---CKHFLD 451
           TA+  G    GK  +A+D+F +M ++G+ PD    V VLSAC H G ++ G    KH  +
Sbjct: 181 TALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEE 240

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           M    N   +T     +V+L+ + G + +A  +  SM    D   W  ++
Sbjct: 241 MEMQKNSFVRT----TLVNLYAKCGKMEKARSVFDSMG-EKDIVTWSTMI 285


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/580 (35%), Positives = 329/580 (56%), Gaps = 16/580 (2%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEI--ENL----SLQNPQVYLYNF 88
           KS  Q KQ HA  I+T S  H +  +   +IS+    ++  E L    +L++P V  +  
Sbjct: 19  KSKSQAKQLHAQFIRTQSLSHTSASI---VISIYTNLKLLHEALLVFKTLESPPVLAWKS 75

Query: 89  IIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           +I+C ++ +    A+A + EM   G  P+    P VLK+C     LR G+ VH + ++  
Sbjct: 76  VIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLG 135

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
           +  ++Y  N LM +Y+    I +V K+F        ++D+VS+ T+I  Y +     +A+
Sbjct: 136 MDCDLYTGNALMNMYSKLLGIDSVRKVFEL----MPRKDVVSYNTVIAGYAQSGMYEDAL 191

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
               +M  ++L+PD   L  VL   S+  D+  G +IH Y+      +  DV+I ++L+D
Sbjct: 192 RMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRK--GIDSDVYIGSSLVD 249

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY K   I  + +VF  +  ++ +SWNS++AG    G++ EAL +FR+M    ++P    
Sbjct: 250 MYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVA 309

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
              V+ +CA++  L LGK +H Y+ +     + FI +ALVDMY+KCG I  A  +F  M 
Sbjct: 310 FSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMN 369

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
             D  S+TA+I+G A+HG   +A+ +F EM + G++P++V FV VL+ACSH GLV+E   
Sbjct: 370 LHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWG 429

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           +F  M++VY L  + EHY  + DL GRAG + EA D I  M + P   VW  LL +C +H
Sbjct: 430 YFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVH 489

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
             +ELAE V E +   + E  GAY+LM N+Y+S  RWKE  KLR +++++ ++K P CS 
Sbjct: 490 KNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSW 549

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +E+  + + F  GD+SHP    I + L  +M Q +  GY+
Sbjct: 550 IEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYV 589


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/541 (38%), Positives = 313/541 (57%), Gaps = 38/541 (7%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P EA++L+ EM+  G+ P++ T+  V+ AC + + L +G++V AY  +  L  N  + N 
Sbjct: 213 PKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNA 272

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +Y  CG I A  +LF         R+LV + T++  Y +     EA+    +M Q  
Sbjct: 273 LVDMYMKCGAIDAAKRLFD----ECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQG 328

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG---- 273
            RPD + ++  +SA ++L DL  G   H Y+  N   L     I N +IDMY+KCG    
Sbjct: 329 PRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRN--GLEGWDSIGNVIIDMYMKCGKPEM 386

Query: 274 ---------------------------NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
                                      ++ SA +VF+++P +N V WN+MI+GL  +  F
Sbjct: 387 ACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLF 446

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
           ++A+++FR MQG G+K D  T++ + ++C  +G  EL KWVHTY++KN I  D  +  AL
Sbjct: 447 EDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTAL 506

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           VDM+A+CG    A  VF  M  RDV ++TA I  +A+ G    A  +F++M   G++PD 
Sbjct: 507 VDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDV 566

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           V FV VL+ACSH G VE+G  H   +   + + PQ EHYGCMVDL GRAGL+REA DLIK
Sbjct: 567 VLFVQVLTACSHGGQVEQGL-HIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIK 625

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546
           SMP+ P+  VWG+LL AC++H  VE+A    E +    P+  G ++L++NIY+S  +W +
Sbjct: 626 SMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTD 685

Query: 547 ALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             ++R  ++E+ V+K PG S V+V G  +EF  GD+SHP+   I  +L E+  +  + G+
Sbjct: 686 VARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGH 745

Query: 607 I 607
           I
Sbjct: 746 I 746



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 169/539 (31%), Positives = 268/539 (49%), Gaps = 62/539 (11%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEI---ENLSL- 78
           S L++S  L   K++ QLKQ H  I K G  Q  + +   K+++   G EI   E+L   
Sbjct: 26  SCLNES--LRCCKTLNQLKQLHCQITKNGLDQIPSTL--TKLVNA--GAEIASPESLDYA 79

Query: 79  ------------QNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLK 125
                        +  +++ N +I+  S+A    EAI LY  ML+ G+ PN YT P+VL 
Sbjct: 80  RKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLS 139

Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
            C +  +   G QVH   +K  L  +V++ N L+  YA CG +   HK+F       ++R
Sbjct: 140 GCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVF----EGMSER 195

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           ++VSWT+LI  Y + D P EA+  FF+M +A +RP  + +V V+SAC+KL DL +G ++ 
Sbjct: 196 NVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVC 255

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
            YI +    L  +  + NAL+DMY+KCG I +A+++FDE   +N+V +N++++    +G 
Sbjct: 256 AYIGE--LGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGL 313

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
            +EAL I   M   G +PD  T++  +++ A +  L  GK  H Y+ +N +     IGN 
Sbjct: 314 AREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNV 373

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG---KAWK------------- 409
           ++DMY KCG+ + A  VF  M  + V S+ ++  G   +G    AW+             
Sbjct: 374 IIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFW 433

Query: 410 ---------------ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
                          A+++F EM   GI+ D VT +G+ SAC + G   E  K       
Sbjct: 434 NTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG-APELAKWVHTYIE 492

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
              +         +VD+F R G  + A+ +   M    D   W A +G   +    E A
Sbjct: 493 KNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT-ERDVSAWTAAIGTMAMEGNGEGA 550


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/592 (35%), Positives = 348/592 (58%), Gaps = 52/592 (8%)

Query: 12   RYNDINTFQQLSLLHQSPRLESSKSVGQ-LKQFHAFIIKTGSPQHQTQILYDKIISLSRG 70
            R++D    Q   LL Q   ++  ++V + +K+ HA ++ +G   H  Q    K+I L   
Sbjct: 830  RFSDAE--QARKLLDQRKIVKLQEAVMEAVKKLHAHLVVSG--LHNCQYAMSKVIRLYAL 885

Query: 71   NEIENLS-------LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPY 122
            ++ + +S       +++P  +L+N +++ L+ ++ P +AI  Y++   KG+ P+  T P+
Sbjct: 886  HQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPF 945

Query: 123  VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
            VLKAC ++ + + G+Q+H + +K   L +++V N+L+ LYA CG +     +F+      
Sbjct: 946  VLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFN----EM 1001

Query: 183  AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLG 241
              +D+VSW +LI  Y + +   E +L+ F + QA  ++ D + +V V+SAC+ LGD S+ 
Sbjct: 1002 LVKDVVSWNSLIGGYSQHNRLKE-VLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMA 1060

Query: 242  IKIHRYITDNHFNLSPDVFIHNALID-------------------------------MYL 270
              + RYI  NH  +  DV++ N LID                                Y 
Sbjct: 1061 DCMVRYIEHNHIEV--DVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYA 1118

Query: 271  KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
            K GN+ SA+K+FD++P K+++SW+SMI   +    F ++L++FR+MQ   +KPD   +  
Sbjct: 1119 KGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIAS 1178

Query: 331  VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
            VL++CA++G L+LGKW+H Y+ +N+I  D  + N+L+DM+AKCG + +A  VF  M+ +D
Sbjct: 1179 VLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKD 1238

Query: 391  VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
              S+ ++I+GLA +G   +ALDIF  M   G  P+EVTF+GVL AC++  LVEEG  HF 
Sbjct: 1239 TLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFE 1298

Query: 451  DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
             M  V+NL+PQ +HYGC+VD+  RAG + +A+  I  MPL PD  VW  LLGAC+ H  V
Sbjct: 1299 RMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRILLGACRTHGNV 1358

Query: 511  ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
             +AE+  + L   +P      +L++NIY+S +RW +A+ +R+   +  V ++
Sbjct: 1359 AVAEMATKKLSELDPGNSADSMLLSNIYASADRWSDAMNVRRWTADNAVGES 1410



 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 136/404 (33%), Positives = 226/404 (55%), Gaps = 35/404 (8%)

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W   ++AY    +P EA L  F   + +L  D  +   VL AC+ LG    G ++H  + 
Sbjct: 448 WRAFLKAYSHGPFPLEA-LHLFKHARQHLADDTFVFTFVLKACAGLGWHRAGAQLHALVV 506

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ---- 305
              F      ++H ALI++Y+    +  ARKVFDEMPVKNVVSWN MI G    G+    
Sbjct: 507 QKGFEFH--AYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYA 564

Query: 306 ---------------------------FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
                                      + EAL + R M   G+ P + T++ V+ + +N+
Sbjct: 565 RLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNL 624

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM-KCRDVYSYTAM 397
           G + +G+ ++ Y +K  I +D  +GN+L+D+YAK G +  +  VF  M   R++ S+T++
Sbjct: 625 GGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSI 684

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I G A+HG + +AL++F+EM + GI+P+ +TF+ V++ACSH GLVE+G   F  M   YN
Sbjct: 685 ISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYN 744

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           + P+ +H+GC++D+ GRAG + EA  +I+ +P+  +  VW  LLG C  + +V + E  +
Sbjct: 745 IDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAI 804

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
           + +   E E  G + +++N+ +   R+ +A + RK + +RK+ K
Sbjct: 805 KMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVK 848



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 152/313 (48%), Gaps = 36/313 (11%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           PLEA+ L++    + L  +T+   +VLKAC      R G Q+HA  ++     + YV   
Sbjct: 461 PLEALHLFKHAR-QHLADDTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTA 519

Query: 158 LMRLYAVCGLIKAVHKLFH-----------------------------FRQHPQAQRDLV 188
           L+ +Y +   +    K+F                              F Q P   R++V
Sbjct: 520 LINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPC--RNVV 577

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
           SWT LI  Y +     EA+     M    + P  + ++ V+ A S LG + +G  ++ Y 
Sbjct: 578 SWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYC 637

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM-PVKNVVSWNSMIAGLTHRGQFK 307
                 +  D  + N+LID+Y K G++ ++ KVFDEM   +N+VSW S+I+G    G   
Sbjct: 638 EKK--GIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSV 695

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNAL 366
           EAL++F  M+  G+KP+  T + V+N+C++ G +E G  +  + + + +I+ +      +
Sbjct: 696 EALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCI 755

Query: 367 VDMYAKCGRIDQA 379
           +DM  + GR+ +A
Sbjct: 756 IDMLGRAGRLCEA 768



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/439 (22%), Positives = 201/439 (45%), Gaps = 36/439 (8%)

Query: 100  EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
            EA+ L R M+  G+ P+  T+  V+ A      + +G+ ++ Y  K  ++S+  V N+L+
Sbjct: 594  EALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLI 653

Query: 160  RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
             LYA  G ++   K+F        +R+LVSWT++I  +       EA+  F +M +A ++
Sbjct: 654  DLYAKIGSVQNSLKVF---DEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIK 710

Query: 220  PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            P+ +  + V++ACS  G +  G+   + +    +N+ P++     +IDM  + G +  A 
Sbjct: 711  PNRITFLSVINACSHGGLVEQGLAFFKSMV-YEYNIDPEIKHFGCIIDMLGRAGRLCEAE 769

Query: 280  KVFDEMPVK-NVVSWNSMIAGLTHRGQ-------FKEALDIFRRMQG-----------LG 320
            ++ + +P++ NV  W  ++   +  G+        K   D+ R   G           LG
Sbjct: 770  QIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELG 829

Query: 321  LKPDDFTLVCVLNSCANI----GWLELGKWVHTYLDKNHINTDGFIGNALVDMYA-KCGR 375
               D      +L+    +      +E  K +H +L  + ++   +  + ++ +YA     
Sbjct: 830  RFSDAEQARKLLDQRKIVKLQEAVMEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSD 889

Query: 376  IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
            +  A  VF+ ++    + +  ++ GLA       A+  + +  + G++PD +TF  VL A
Sbjct: 890  LVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKA 949

Query: 436  CSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
            C+     +EG +   H + +  + ++         ++ L+   G +  A  +   M LV 
Sbjct: 950  CAKTCAPKEGEQMHNHVIKLGFLLDIFVSNS----LIYLYAACGALACARSVFNEM-LVK 1004

Query: 493  DAFVWGALLGACKIHAKVE 511
            D   W +L+G    H +++
Sbjct: 1005 DVVSWNSLIGGYSQHNRLK 1023


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/515 (40%), Positives = 294/515 (57%), Gaps = 44/515 (8%)

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
            SL+  + VHA  ++  L  + Y+ N ++R     G     H++FH  + P    ++  +
Sbjct: 21  NSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEP----NIFLF 76

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
            T+I   V  D   E+I  +  M +  L PD      +L AC++L D  LGIK+H  +  
Sbjct: 77  NTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVK 136

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV-------------------- 290
                  D F++ +L+ +Y KCG I +A KVFD++P KNV                    
Sbjct: 137 A--GCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAI 194

Query: 291 ------------------VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
                             VSW+SMI G    G  KEALD+F +M   G +PD + +V VL
Sbjct: 195 DMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVL 254

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +CA +G LELG W    +D+N    +  +G AL+DMYAKCGR+D A+ VFR M+ +D+ 
Sbjct: 255 CACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIV 314

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            + A I GLA+ G    A  +F +M + GIEPD  TFVG+L AC+HAGLV+EG ++F  M
Sbjct: 315 VWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSM 374

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
            RV+ L P+ EHYGCMVDL GRAG + EA  L+KSMP+  +A VWGALLG C++H   +L
Sbjct: 375 ERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQL 434

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            E V++ L+  EP   G Y+L++NIYS+ ++W++A K+R  M ER +KK PG S +EV G
Sbjct: 435 VEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDG 494

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             +EF  GD SHP + +IY  L E++   K  GY+
Sbjct: 495 VVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYV 529



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/412 (29%), Positives = 199/412 (48%), Gaps = 47/412 (11%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS------LQNPQVYLYNFI 89
           S+  LK  HA +++ G    +   L +K++  S      N S       + P ++L+N +
Sbjct: 22  SLKHLKHVHAALLRLG--LDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTM 79

Query: 90  IQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I  L  N +  E+I +Y  M  +GL P+++T P++LKAC +    ++G ++H   +K   
Sbjct: 80  IHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGC 139

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFH-----------------------------FRQ 179
            S+ +V  +L+ LY  CG I    K+F                              FR+
Sbjct: 140 ESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRR 199

Query: 180 HPQA-----QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
                    ++D+VSW+++IQ Y     P EA+  FF M     RPD   +V VL AC++
Sbjct: 200 ACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACAR 259

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           LG L LG      +  N F  +P   +  ALIDMY KCG + SA +VF  M  K++V WN
Sbjct: 260 LGALELGNWASNLMDRNEFLGNP--VLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWN 317

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           + I+GL   G  K A  +F +M+  G++PD  T V +L +C + G ++ G+     +++ 
Sbjct: 318 AAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERV 377

Query: 355 HINTDGFIG-NALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIH 404
              T        +VD+  + G +D+A  + +SM    +   + A++ G  +H
Sbjct: 378 FTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLH 429


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/546 (37%), Positives = 314/546 (57%), Gaps = 44/546 (8%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+  + +M   G L N Y+    L AC   Q L++G Q+H+   ++  LS+VY+ + L+
Sbjct: 134 EALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALV 193

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ CG ++    +F         R  VSW +LI  Y +     EA+  F +M +  + 
Sbjct: 194 DMYSKCGRVEYAQSVFD----EMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVE 249

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           PD + L  V+SAC+ +  +  G +IH R +  + F    D+ + NAL+DMY KC  I  A
Sbjct: 250 PDEVTLASVVSACATISAIKEGQQIHARVVKCDEFR--NDLILGNALLDMYAKCNRINEA 307

Query: 279 RKVFDEMP-------------------------------VKNVVSWNSMIAGLTHRGQFK 307
           R +FD MP                               VK+V++WN++IAG T  G+ +
Sbjct: 308 RIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENE 367

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI------NTDGF 361
           EAL +FR ++   + P  +T   +LN+CAN+  L+LG+  H+++ K+        ++D F
Sbjct: 368 EALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVF 427

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           +GN+L+DMY KCG ++    VF+ M  +D  S+ AMIVG A +G   KAL++F +M + G
Sbjct: 428 VGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESG 487

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
             PD VT +GVL ACSHAGL++EG  +F  M+  + L P  +HY CMVDL GRAG + EA
Sbjct: 488 EAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEA 547

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
            +LI+ M + PDA VWG+LL ACK+H  ++L E V++ L+  +PE  G Y+L++N+Y+  
Sbjct: 548 KNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAEN 607

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQS 601
             WK  +++RK M++R V K PGCS +E+ GE   F   DK H +  EIY +L  I+ Q 
Sbjct: 608 RDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQQM 667

Query: 602 KNHGYI 607
           K  GY+
Sbjct: 668 KQAGYV 673



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 183/365 (50%), Gaps = 42/365 (11%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L  ++     +L  C +S+S R   +VHA  +K+   S  ++ N L+ +Y  CG +    
Sbjct: 15  LFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVAR 74

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF-----FDMCQANLRPDGM---- 223
           KLF        +R++ SW ++I A+ K  +  +A+  F      D C  N    G     
Sbjct: 75  KLF----DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHG 130

Query: 224 ----------------ILV------IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
                            LV        LSAC+ L DL LG +IH  +  +  N   DV++
Sbjct: 131 RFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRS--NYLSDVYM 188

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            +AL+DMY KCG +  A+ VFDEM V++ VSWNS+I      G   EAL IF  M   G+
Sbjct: 189 GSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGV 248

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAF 380
           +PD+ TL  V+++CA I  ++ G+ +H  + K +    D  +GNAL+DMYAKC RI++A 
Sbjct: 249 EPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEAR 308

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            +F  M  R V S T+M+ G A   K   A  +FS M    +  D +T+  +++ C+  G
Sbjct: 309 IIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNM----MVKDVITWNALIAGCTQNG 364

Query: 441 LVEEG 445
             EE 
Sbjct: 365 ENEEA 369



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 170/357 (47%), Gaps = 65/357 (18%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +L+ C++        ++H  I  + F  + + FI N LID+Y KCG +  ARK+FD M  
Sbjct: 25  LLNQCARSRSARDTSRVHACIIKSPF--ASETFIQNRLIDVYGKCGCVDVARKLFDRMLE 82

Query: 288 KNV-------------------------------VSWNSMIAGLTHRGQFKEALDIFRRM 316
           +N+                                SWNSMI+G    G+F EAL  F +M
Sbjct: 83  RNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQM 142

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
            G G   ++++    L++CA +  L+LG  +H+ + +++  +D ++G+ALVDMY+KCGR+
Sbjct: 143 HGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRV 202

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           + A  VF  M  R   S+ ++I     +G   +AL IF EM + G+EPDEVT   V+SAC
Sbjct: 203 EYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSAC 262

Query: 437 SHAGLVEEG---------CKHF----------LDMSR----------VYNLQP--QTEHY 465
           +    ++EG         C  F          LDM            ++++ P       
Sbjct: 263 ATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSE 322

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
             MV  + +A  ++ A  +  +M +V D   W AL+  C  + + E A I+   L R
Sbjct: 323 TSMVSGYAKASKVKVARYMFSNM-MVKDVITWNALIAGCTQNGENEEALILFRLLKR 378



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 13/224 (5%)

Query: 88  FIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
            I  C  N    EA+ L+R +  + + P  YT   +L AC     L++G+Q H++ +K  
Sbjct: 356 LIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHG 415

Query: 148 LL------SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
                   S+V+V N+L+ +Y  CG ++   ++F   QH   ++D VSW  +I  Y +  
Sbjct: 416 FRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVF---QH-MLEKDCVSWNAMIVGYAQNG 471

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           +  +A+  F  M ++   PD + ++ VL ACS  G L  G    R +T  H  L P    
Sbjct: 472 FGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQH-GLMPLKDH 530

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGL-THR 303
           +  ++D+  + G +  A+ + +EM ++ + + W S++A    HR
Sbjct: 531 YTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHR 574


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/646 (34%), Positives = 336/646 (52%), Gaps = 75/646 (11%)

Query: 33  SSKSVGQLKQFHAFIIKTG---SPQHQTQIL--YDKIISLSRGNEIENLSLQNPQVYLYN 87
           ++ S+ Q +Q HA I+KTG        T++L  Y   +  +    + +L +  P V+ ++
Sbjct: 25  TTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDL-VPEPNVFSFS 83

Query: 88  FIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
            +I   S  +    A++ + +ML +GL+P+   LP  +KAC    +L+  +QVH  +  +
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVS 143

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA----------------------- 183
              S+ +V ++L+ +Y  C  I+  H++F     P                         
Sbjct: 144 GFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLF 203

Query: 184 --------QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
                   Q +L+SW  +I  +      +EA+L F DM      PDG  +  VL A   L
Sbjct: 204 SEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDL 263

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK------- 288
            DL +GI IH Y+      L  D  + +ALIDMY KC       +VFD+M          
Sbjct: 264 EDLVMGILIHGYVIKQ--GLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNA 321

Query: 289 ----------------------------NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
                                       NVVSW SMIA  +  G+  EAL++FR MQ  G
Sbjct: 322 FIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAG 381

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           +KP+  T+ C+L +C NI  L  GK  H +  +  I+TD ++G+AL+DMYAKCGRI  + 
Sbjct: 382 VKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASR 441

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
             F  +  +++  + A+I G A+HGKA +A++IF  M + G +PD ++F  VLSACS +G
Sbjct: 442 ICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSG 501

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           L EEG  +F  MS  Y ++ + EHY CMV L  RAG + +A  +I+ MP+ PDA VWGAL
Sbjct: 502 LTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGAL 561

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           L +C++H  V L E+  E L   EP   G YIL++NIY+SK  W E  ++R  MK + ++
Sbjct: 562 LSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLR 621

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           K PGCS +EV  + +    GDKSHP+  +I + LD++  + K  GY
Sbjct: 622 KNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMKKLGY 667



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           S    LS   + H +I      L  D  +   L+  Y        A  V D +P  NV S
Sbjct: 24  STTASLSQTRQAHAHILKT--GLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFS 81

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           ++++I   +   QF  AL  F +M   GL PD+  L   + +CA +  L+  + VH    
Sbjct: 82  FSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIAS 141

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
            +  ++D F+ ++LV MY KC +I  A  VF  M   DV S++A++   A  G   +A  
Sbjct: 142 VSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKR 201

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           +FSEM   G++P+ +++ G+++  +H+GL  E    FLDM
Sbjct: 202 LFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/532 (38%), Positives = 312/532 (58%), Gaps = 8/532 (1%)

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           LQ   +  ++ II  L     P EA++L++EM  + + PN  TL  +L AC     L++G
Sbjct: 390 LQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG 449

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           + +H +++K  + S++     L+ +YA CG   A    F+      + RD+V+W +LI  
Sbjct: 450 KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFN----RMSSRDIVTWNSLING 505

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y ++  P  AI  F+ +  + + PD   +V V+ AC+ L DL  G  IH  I    F   
Sbjct: 506 YAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFE-- 563

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
            D  + NALIDMY KCG++PSA  +F++    K+ V+WN +IA     G  KEA+  F +
Sbjct: 564 SDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQ 623

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+     P+  T V VL + A +     G   H  + +    ++  +GN+L+DMYAKCG+
Sbjct: 624 MRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQ 683

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +  +  +F  M  +D  S+ AM+ G A+HG   +A+ +FS M +  ++ D V+FV VLSA
Sbjct: 684 LXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSA 743

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           C H GLVEEG K F  MS  Y+++P  EHY CMVDL GRAGL  E L  IK MP+ PDA 
Sbjct: 744 CRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAG 803

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           VWGALLG+C++H+ V+L E+ +++LV+ EP     ++++++IY+   RW +A K R KM 
Sbjct: 804 VWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMN 863

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +  +KKTPGCS VE+  + + FR GDKSHP+   ++ L + ++ + +  GY+
Sbjct: 864 DLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYV 915



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 243/498 (48%), Gaps = 14/498 (2%)

Query: 10  GSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSR 69
            S +  +++    + LH    L S K +  L Q HA II +G   H +      + SL  
Sbjct: 18  ASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFH 77

Query: 70  GNEIENL---SLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLK 125
             ++      S  NP   L+N +I+  + +    EA+ +Y  M+ KGL P+ YT  +VLK
Sbjct: 78  KCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLK 137

Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
           AC  + +L+ G   H    +  L  +V++   L+ +Y+  G +K   ++F        +R
Sbjct: 138 ACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVF----DKMPKR 193

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           D+V+W  +I    + + P EA+  F  M    + P  + L+ +     KL ++ L   IH
Sbjct: 194 DVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIH 253

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
            Y+    F+ +    + N LID+Y KCG++  AR+VFD+M  ++ VSW +M+AG  H G 
Sbjct: 254 GYVFRRDFSSA----VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGC 309

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
           F E L++F +M+   ++ +  + V    + A    LE GK +H    +  I++D  +   
Sbjct: 310 FVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATP 369

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           L+ MYAKCG  ++A  +F  ++ RD+ +++A+I  L   G   +AL +F EM    ++P+
Sbjct: 370 LMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPN 429

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
            VT + +L AC+   L++ G K     +   ++         +V ++ + G    AL   
Sbjct: 430 RVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTF 488

Query: 486 KSMPLVPDAFVWGALLGA 503
             M    D   W +L+  
Sbjct: 489 NRMS-SRDIVTWNSLING 505



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 229/470 (48%), Gaps = 15/470 (3%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTY 118
           +Y K+  L R  E+ +  +    V  +N +I  LS + +P EA+  +R M + G+ P++ 
Sbjct: 173 MYSKMGDLKRAREVFD-KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSV 231

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           +L  +     +  ++ + + +H Y  +    S V   N L+ LY+ CG +    ++F   
Sbjct: 232 SLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVS--NGLIDLYSKCGDVDVARRVFD-- 287

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                 +D VSW T++  Y       E +  F  M   N+R + +  V    A ++  DL
Sbjct: 288 --QMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDL 345

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G +IH        +   D+ +   L+ MY KCG    A+++F  +  +++V+W+++IA
Sbjct: 346 EKGKEIHGCALQQRID--SDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIA 403

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
            L   G  +EAL +F+ MQ   +KP+  TL+ +L +CA++  L+LGK +H +  K  +++
Sbjct: 404 ALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDS 463

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           D   G ALV MYAKCG    A   F  M  RD+ ++ ++I G A  G  + A+D+F ++ 
Sbjct: 464 DLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLR 523

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
              I PD  T VGV+ AC+    +++G C H L +   +      ++   ++D++ + G 
Sbjct: 524 LSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN--ALIDMYAKCGS 581

Query: 478 IREALDLIKSMPLVPDAFVWGALLGAC--KIHAKVELAEIVMENLVRFEP 525
           +  A  L        D   W  ++ A     HAK  ++      L  F P
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHP 631


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/585 (37%), Positives = 338/585 (57%), Gaps = 31/585 (5%)

Query: 20  QQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII---SLSRGNEIE-N 75
           Q++S LH+        S+ Q+KQ HA ++K     H+   +  K+I   SL R   +  N
Sbjct: 19  QKISDLHRC------SSLNQVKQIHAQVLKAN--LHRESFVGQKLIAAFSLCRQMTLAVN 70

Query: 76  L--SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQS 132
           +   +Q+P V LYN +I+  + N+ PL A +++ EM   G+  + +T P++LKAC     
Sbjct: 71  VFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVW 130

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL--IKAVHKLFHFRQHPQAQRDLVSW 190
           +RV + +HA   K     +++V N+L+  Y  CGL  + A  K+F       A+RD VSW
Sbjct: 131 VRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEV----MAERDTVSW 186

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
            ++I   VK+    EA   F +M +     D +    +L    K G+++   ++   +  
Sbjct: 187 NSMIGGLVKVGELGEARRLFDEMPER----DTVSWNTILDGYVKAGEMNAAFELFEKMP- 241

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
                + +V   + ++  Y K G++  AR +FD+MPVKN+V W  MI+G   +G  K+A+
Sbjct: 242 -----ARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAI 296

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           +++ +M+  GLK DD T++ +L++CA  G L LGK VH  +++        + NAL+DMY
Sbjct: 297 NLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMY 356

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           AKCG ++ A  +F  M  +DV S+ A+I GLA+HG   KAL +FS M   G  PD+VTFV
Sbjct: 357 AKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFV 416

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
           GVL AC+HAG V+EG  +F  M R Y + P+ EHYGCMVDL GR G ++EA  L+ SMPL
Sbjct: 417 GVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPL 476

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            P+A +WG LLGAC++H+   LAE V + LV+ E    G   +++NIY++   W     +
Sbjct: 477 EPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANI 536

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           R +MK   ++K  G S +EV  E +EF   D+SHPK+  IYK +D
Sbjct: 537 RLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTID 581


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/533 (37%), Positives = 320/533 (60%), Gaps = 18/533 (3%)

Query: 78  LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +  P   ++N + +  S N +  + I L+R+M    ++PN +T P +LK+C +  +L+ G
Sbjct: 11  IPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINALKEG 70

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           ++VH + +K+   +N +V  TL+ +YA  G I A +++F        +R++++WT +I  
Sbjct: 71  EEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFG----EMIERNVIAWTAMING 126

Query: 197 YVKM-DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           Y+   D  T   L  FD+       D ++   ++S   +  D+       R + D   N 
Sbjct: 127 YITCCDLVTARRL--FDLAPER---DIVLWNTMISGYIEAKDVIRA----RELFDKMPN- 176

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             DV   N +++ Y   G++ +  ++F+EMP +NV SWN++I G T  G F E L  F+R
Sbjct: 177 -KDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKR 235

Query: 316 MQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           M   G + P+D TLV VL++CA +G L+LGKWVH Y + +    + ++ NAL+DMYAKCG
Sbjct: 236 MLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCG 295

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            ++ A  VF+SM  +D+ S+  +I GLA+HG    AL++FS M   G  PD +TF+G+L 
Sbjct: 296 VVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILC 355

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           AC+H GLVE+G  +F  M+  Y++ P+ EHYGC+VDL GRAGL+  A+D I+ MP+  DA
Sbjct: 356 ACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADA 415

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            +W ALLGAC+++  VELAE+ +E L+ FEP+    Y++++NIY    RWK+  +L+  M
Sbjct: 416 VIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAM 475

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           ++   KK PGCSL+EV     EF   D+ HP+  +IY  L  +    ++ GY+
Sbjct: 476 RDTGFKKLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTLTKLLRSSGYV 528



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 14/231 (6%)

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           + +A KVFD++P  N   WN+M  G +     K+ + +FR+M+GL + P+ FT   +L S
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           C  I  L+ G+ VH ++ K+    + F+   L+DMYA  G I  A+ VF  M  R+V ++
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           TAMI G         A  +F     +  E D V +  ++S     G +E   K  +    
Sbjct: 121 TAMINGYITCCDLVTARRLF----DLAPERDIVLWNTMIS-----GYIE--AKDVIRARE 169

Query: 455 VYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           +++  P  +   +  +++ +   G +     L + MP   + F W AL+G 
Sbjct: 170 LFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMP-ERNVFSWNALIGG 219


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/583 (34%), Positives = 332/583 (56%), Gaps = 20/583 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQ--TQILYDKIISLSRGNEIENL--SLQNPQVYLY 86
           L+S K+  Q+ Q  A II  G   ++  T  L     +L R      L   + +P + L+
Sbjct: 45  LQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALW 104

Query: 87  NFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           N + +  + +    E + L+ +M    + PN +T P VLK+C +  +L  G+QVH + +K
Sbjct: 105 NSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIK 164

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
                N +V  TL+ +Y+  G +   +K+F        +R++V+WT++I  Y+ +     
Sbjct: 165 CGFRGNPFVGTTLIDMYSAGGTVGDAYKIFC----EMFERNVVAWTSMINGYI-LSADLV 219

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           +    FD+       D ++  I++S   + GD+    K+   + +       DV   N +
Sbjct: 220 SARRLFDLAPER---DVVLWNIMVSGYIEGGDMVEARKLFHEMPNR------DVMFWNTV 270

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPD 324
           +  Y   GN+ +   +F+EMP +N+ SWN++I G  H G F E L  F+RM     + P+
Sbjct: 271 LKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPN 330

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
           D TLV VL++CA +G L+LGKWVH Y + + +  + ++GNAL+DMYAKCG I+ A  VFR
Sbjct: 331 DATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFR 390

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            M  +D+ S+  +I GLA+H +   AL++F +M   G +PD +TF+G+L AC+H GLVE+
Sbjct: 391 GMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVED 450

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G  +F  M+  Y + PQ EHYGCMVD+  RAG + +A+  ++ MP+  D  +W  LLGAC
Sbjct: 451 GFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGAC 510

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           +I+  VELAE+ ++ L+  EP+    Y++++NIY    RW++  +L+  M++   KK PG
Sbjct: 511 RIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPG 570

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           CSL+EV     EF   D+ HP+  EIY +L  ++   ++ GY+
Sbjct: 571 CSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYV 613


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/646 (34%), Positives = 336/646 (52%), Gaps = 75/646 (11%)

Query: 33  SSKSVGQLKQFHAFIIKTG---SPQHQTQIL--YDKIISLSRGNEIENLSLQNPQVYLYN 87
           ++ S+ Q +Q HA I+KTG        T++L  Y   +  +    + +L +  P V+ ++
Sbjct: 25  TTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDL-VPEPNVFSFS 83

Query: 88  FIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
            +I   S  +    A++ + +ML +GL+P+   LP  +KAC    +L+  +QVH  +  +
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVS 143

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA----------------------- 183
              S+ +V ++L+ +Y  C  I+  H++F     P                         
Sbjct: 144 GFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLF 203

Query: 184 --------QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
                   Q +L+SW  +I  +      +EA+L F DM      PDG  +  VL A   L
Sbjct: 204 SEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDL 263

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK------- 288
            DL +GI IH Y+      L  D  + +ALIDMY KC       +VFD+M          
Sbjct: 264 EDLVMGILIHGYVIKQ--GLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNA 321

Query: 289 ----------------------------NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
                                       NVVSW SMIA  +  G+  EAL++FR MQ  G
Sbjct: 322 FIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAG 381

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           +KP+  T+ C+L +C NI  L  GK  H +  +  I+TD ++G+AL+DMYAKCGRI  + 
Sbjct: 382 VKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASR 441

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
             F  +  +++  + A+I G A+HGKA +A++IF  M + G +PD ++F  VLSACS +G
Sbjct: 442 ICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSG 501

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           L EEG  +F  MS  Y ++ + EHY CMV L  RAG + +A  +I+ MP+ PDA VWGAL
Sbjct: 502 LTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGAL 561

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           L +C++H  V L E+  E L   EP   G YIL++NIY+SK  W E  ++R  MK + ++
Sbjct: 562 LSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLR 621

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           K PGCS +EV  + +    GDKSHP+  +I + LD++  + K  GY
Sbjct: 622 KNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGY 667



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           S    LS   + H +I      L  D  +   L+  Y        A  V D +P  NV S
Sbjct: 24  STTASLSQTRQAHAHILKT--GLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFS 81

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           ++++I   +   QF  AL  F +M   GL PD+  L   + +CA +  L+  + VH    
Sbjct: 82  FSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIAS 141

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
            +  ++D F+ ++LV MY KC +I  A  VF  M   DV S++A++   A  G   +A  
Sbjct: 142 VSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKR 201

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           +FSEM   G++P+ +++ G+++  +H+GL  E    FLDM
Sbjct: 202 LFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/616 (36%), Positives = 343/616 (55%), Gaps = 59/616 (9%)

Query: 2   ASPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILY 61
           +SPL V + +  +D N  + + LL    R  +  S+ QL +  A II +  P     I+ 
Sbjct: 5   SSPLLVITLAVLHDYNHRKTIHLL---LRCATQLSMRQLFEIQAQIIASPIPSIDPNIIA 61

Query: 62  DKII--SLSRGNE-----IENLSLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGL 113
            K I  S S GN      I N  L  P ++ YN +++  S  N     I+ +   L+   
Sbjct: 62  VKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPN 121

Query: 114 LPN--TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
            PN   YT   VLKAC     +  GQ+VH +  K    SN++V N+L+ LY   G     
Sbjct: 122 APNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIA 181

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
            KLF         RD+VSW TLI  Y       +A + F          DGM        
Sbjct: 182 QKLFD----EMVVRDVVSWNTLISGYCFSGMVDKARMVF----------DGM-------- 219

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
                                  +  ++   + +I  Y + GN+  AR++F+ MP++NVV
Sbjct: 220 -----------------------MEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVV 256

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           SWN+MIAG     ++ +A+++FR+MQ  G L P+D TLV VL++CA++G L+LGKW+H +
Sbjct: 257 SWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRF 316

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           + +N I    F+GNAL DMYAKCG + +A GVF  M  RDV S++ +I+GLA++G A +A
Sbjct: 317 IRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEA 376

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
            + F+EM + G+EP++++F+G+L+AC+HAGLV++G ++F  M +VY + P+ EHYGC+VD
Sbjct: 377 FNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVD 436

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           L  RAG + +A  LI SMP+ P+  VWGALLG C+I+   E  E V+  ++  +    G+
Sbjct: 437 LLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGS 496

Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
            + + N+Y+S  R  +A   R +M++ K  KTPGCS +E+    YEF  GD SHP++L I
Sbjct: 497 LVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRI 556

Query: 591 YKLLDEIMHQSKNHGY 606
           Y ++ E+  + K  GY
Sbjct: 557 YSMIRELKWKMKVAGY 572


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/574 (34%), Positives = 326/574 (56%), Gaps = 15/574 (2%)

Query: 41  KQFHAFIIKTGSPQ-----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           ++ H F++K G        +   ++Y ++ SL+    + +  ++N  V  ++ +I+    
Sbjct: 144 QEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFD-KIENKDVVSWSTMIRSYDR 202

Query: 96  ANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL--SNV 152
           +  L EA+ L R+M +  + P+   +  +     +   L++G+ +HAY M+      S V
Sbjct: 203 SGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGV 262

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            +   L+ +Y  C  +    ++F       ++  ++SWT +I AY+  +   E +  F  
Sbjct: 263 PLCTALIDMYVKCENLAYARRVFD----GLSKASIISWTAMIAAYIHCNNLNEGVRLFVK 318

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M    + P+ + ++ ++  C   G L LG  +H +   N F LS  + +  A IDMY KC
Sbjct: 319 MLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLS--LVLATAFIDMYGKC 376

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G++ SAR VFD    K+++ W++MI+         EA DIF  M G G++P++ T+V +L
Sbjct: 377 GDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLL 436

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
             CA  G LE+GKW+H+Y+DK  I  D  +  + VDMYA CG ID A  +F     RD+ 
Sbjct: 437 MICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDIS 496

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            + AMI G A+HG    AL++F EM  +G+ P+++TF+G L ACSH+GL++EG + F  M
Sbjct: 497 MWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKM 556

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              +   P+ EHYGCMVDL GRAGL+ EA +LIKSMP+ P+  V+G+ L ACK+H  ++L
Sbjct: 557 VHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKL 616

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            E   +  +  EP   G  +LM+NIY+S NRW +   +R+ MK+  + K PG S +EV G
Sbjct: 617 GEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNG 676

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             +EF  GD+ HP   ++Y+++DE+  + ++ GY
Sbjct: 677 LLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGY 710



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 151/537 (28%), Positives = 252/537 (46%), Gaps = 48/537 (8%)

Query: 3   SPLTVASGSRYNDINTFQQLSLLHQSPRLESSKS----------------VGQLKQFHAF 46
           SPL ++       I++FQ  +  H SP L+ ++S                + + +Q H  
Sbjct: 14  SPLPIS-------IHSFQNTNQYH-SPTLKFTQSQPKPNVPHIQQELHINLNETQQLHGH 65

Query: 47  IIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQC-LSNANPLEAIALY 105
            IKT S             + S    +  L   +    +++F+I   + N  P +A  +Y
Sbjct: 66  FIKTSS-------------NCSYRVPLAALESYSSNAAIHSFLITSYIKNNCPADAAKIY 112

Query: 106 REMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC 165
             M       + + +P VLKAC    S  +GQ+VH + +K     +V+V N L+ +Y+  
Sbjct: 113 AYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEV 172

Query: 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
           G +     LF   +     +D+VSW+T+I++Y +     EA+    DM    ++P  + +
Sbjct: 173 GSLALARLLFDKIE----NKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGM 228

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
           + +    ++L DL LG  +H Y+  N       V +  ALIDMY+KC N+  AR+VFD +
Sbjct: 229 ISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGL 288

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
              +++SW +MIA   H     E + +F +M G G+ P++ T++ ++  C   G LELGK
Sbjct: 289 SKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGK 348

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            +H +  +N       +  A +DMY KCG +  A  VF S K +D+  ++AMI   A + 
Sbjct: 349 LLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNN 408

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG--CKHFLDMSRVYNLQPQTE 463
              +A DIF  M+  GI P+E T V +L  C+ AG +E G     ++D   +        
Sbjct: 409 CIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKT 468

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
            +   VD++   G I  A  L        D  +W A++    +H   E A  + E +
Sbjct: 469 SF---VDMYANCGDIDTAHRLFAE-ATDRDISMWNAMISGFAMHGHGEAALELFEEM 521


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/583 (36%), Positives = 326/583 (55%), Gaps = 21/583 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS------LQNPQVY 84
           L        +K+ HA IIK     H    +  K+IS        NL+      +Q+P V+
Sbjct: 30  LHKCTDFNHIKEVHAQIIKRN--LHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVH 87

Query: 85  LYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           LYN +I+  + N+  L+A A + +M   GL  + +T P++LKAC     L   Q +H + 
Sbjct: 88  LYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHV 147

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
            K     +++V N+L+  Y+ CGL+   + +  F +    ++DLVSW ++I   VK    
Sbjct: 148 EKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFME--MGEKDLVSWNSMIGGLVKAGDL 205

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
             A   F +M +     D +    +L    K G++S    +   + +       +V   +
Sbjct: 206 GRARKLFDEMAER----DAVSWNTILDGYVKAGEMSQAFNLFEKMPER------NVVSWS 255

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
            ++  Y K G++  AR +FD+MP KN+V+W  +I+G   +G  KEA  ++ +M+  GLKP
Sbjct: 256 TMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKP 315

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           DD TL+ +L +CA  G L LGK VH  + K  I     + NALVDMYAKCGR+D+A  +F
Sbjct: 316 DDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIF 375

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             M  RD+ S+  M+ GLA+HG   KA+ +FS+M Q G +PD+VT + +L AC+HAG V+
Sbjct: 376 NEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVD 435

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           +G  +F  M R + + P  EHYGCM+DL GR G + EA  L++SMP+ P+  +WG LLGA
Sbjct: 436 QGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGA 495

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C++H  V LAE V++ L+  E    G Y +++NI+++   W     +R +MK   V+K  
Sbjct: 496 CRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPS 555

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           G S +E+  E +EF   DKSHP+T +IY++L ++    K   Y
Sbjct: 556 GASSIELDDEVHEFTVFDKSHPETDKIYQILVKLGQDLKQVAY 598


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/507 (39%), Positives = 295/507 (58%), Gaps = 6/507 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ LY +ML  G  PN +T P+  K+C        G Q+H + +KT      +V  +L+
Sbjct: 39  EALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLI 98

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDL-VSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
            +Y  C  I +  K+F    H    R+L V +  LI  Y      ++A+L F  M +  +
Sbjct: 99  SMYCKCSTIASARKVFDENHH---SRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGV 155

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
             + + ++ ++  C+  G + LG     +     F L  D+ + N L+ MY++CG++  A
Sbjct: 156 SVNAVTMLGLIPVCA--GPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFA 213

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           RK+FD MP K +++WN+MI+G    G     LD++R+M+  G+ PD  TLV VL+SCA++
Sbjct: 214 RKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHL 273

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G    G+ V   ++ +    + F+ NAL++MYA+CG + +A  +F  M  ++V S+TA+I
Sbjct: 274 GAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAII 333

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G  +HG+   A+ +F EM      PD   FV VLSACSHAGL E+G  +F  M R Y L
Sbjct: 334 AGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGL 393

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           QP  EHY C+VDL GRAG + EA  LI SM + PD  VWGALLGACKIH  VELAE+  E
Sbjct: 394 QPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFE 453

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            ++ FEP   G Y+L++NI+S     +  L++R  M+ERK+KK PGCS VE  G  + F 
Sbjct: 454 KVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFL 513

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHG 605
            GD++HP+  EIY +LD +    K  G
Sbjct: 514 AGDRTHPQAQEIYHMLDGLEDIIKRRG 540



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 207/414 (50%), Gaps = 20/414 (4%)

Query: 41  KQFHAFIIKTG---SPQHQTQI--LYDKIISLSRGNEI--ENLSLQNPQVYLYNFIIQCL 93
            Q H  +IKTG    P  QT +  +Y K  +++   ++  EN   +N  V  YN +I   
Sbjct: 76  SQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAV-CYNALIAGY 134

Query: 94  S-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           S N+   +A+ L+R+M  +G+  N  T+  ++  C     L  G  +HA S++  L  ++
Sbjct: 135 SLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDL 194

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V N L+ +Y  CG +    KLF        ++ L++W  +I  Y +       +  +  
Sbjct: 195 SVGNCLLTMYVRCGSVDFARKLF----DGMPEKGLITWNAMISGYAQNGLAGHVLDLYRK 250

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M    + PD + LV VLS+C+ LG  + G ++ + I  + F  +P  F+ NALI+MY +C
Sbjct: 251 MEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNP--FLKNALINMYARC 308

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           GN+  AR +FD M  KNV+SW ++IAG    GQ + A+ +F  M      PD    V VL
Sbjct: 309 GNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVL 368

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSMKCR-D 390
           ++C++ G  E G +  T +++++    G    + +VD+  + GR+++A  +  SM    D
Sbjct: 369 SACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPD 428

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC-SHAGLVE 443
              + A++    IH     A   F ++  +  EP  + +  +LS   S AG +E
Sbjct: 429 GAVWGALLGACKIHRNVELAELAFEKV--IEFEPTNIGYYVLLSNIFSEAGNME 480



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 177/351 (50%), Gaps = 10/351 (2%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           Q    SW   ++   +  +  EA+  +  M  +   P+         +C+ L     G +
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE-MPVKNV-VSWNSMIAGLT 301
           +H ++        P+ F+  +LI MY KC  I SARKVFDE    +N+ V +N++IAG +
Sbjct: 78  LHGHVIKT--GCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYS 135

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
              +F +A+ +FR+M+  G+  +  T++ ++  CA    L  G  +H    +  ++ D  
Sbjct: 136 LNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLS 195

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           +GN L+ MY +CG +D A  +F  M  + + ++ AMI G A +G A   LD++ +M   G
Sbjct: 196 VGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTG 255

Query: 422 IEPDEVTFVGVLSACSHAGLVEEG--CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
           I PD VT VGVLS+C+H G    G   +  +++S  +   P  ++   +++++ R G + 
Sbjct: 256 IVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSG-FGFNPFLKN--ALINMYARCGNLV 312

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           +A  +   M    +   W A++    +H + ELA  + + ++  +   DGA
Sbjct: 313 KARAIFDGMT-EKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGA 362



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 8/230 (3%)

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
            P A K  D        SWN+ +  L  +  F+EAL+++ +M   G  P+ FT      S
Sbjct: 8   FPYANKWLDLQ--NTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKS 65

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF-RSMKCRDV-Y 392
           CA++     G  +H ++ K     + F+  +L+ MY KC  I  A  VF  +   R++  
Sbjct: 66  CASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAV 125

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            Y A+I G +++ +   A+ +F +M + G+  + VT +G++  C  AG +  G    L  
Sbjct: 126 CYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVC--AGPIHLGFGTSLHA 183

Query: 453 SRV-YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
             V + L        C++ ++ R G +  A  L   MP       W A++
Sbjct: 184 CSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMP-EKGLITWNAMI 232


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/533 (38%), Positives = 311/533 (58%), Gaps = 11/533 (2%)

Query: 80  NPQVYLYNFIIQCLSNA--NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           +P  Y +N +I+ L+    N   A++L+  M+   L P+ +T P+   +C    SL    
Sbjct: 83  HPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHAC 142

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
             H+   K AL S+ +  ++L+  YA CGL+ +  K+F    H    RD VSW ++I  Y
Sbjct: 143 AAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPH----RDSVSWNSMIAGY 198

Query: 198 VKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            K     EA+  F +M + +   PD M LV +L AC +LGDL LG  +  ++ +    L+
Sbjct: 199 AKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLN 258

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
              +I +ALI MY KCG + SAR++FD M  ++V++WN++I+G    G   EA+ +F  M
Sbjct: 259 S--YIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGM 316

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +   +  +  TL  VL++CA IG L+LGK +  Y  +     D F+  AL+DMYAK G +
Sbjct: 317 KEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSL 376

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG--IEPDEVTFVGVLS 434
           D A  VF+ M  ++  S+ AMI  LA HGKA +AL +F  MS  G    P+++TFVG+LS
Sbjct: 377 DNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLS 436

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           AC HAGLV+EG + F  MS ++ L P+ EHY CMVDL  RAG + EA DLI+ MP  PD 
Sbjct: 437 ACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDK 496

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
              GALLGAC+    V++ E VM  ++  +P   G YI+ + IY++ N W+++ ++R  M
Sbjct: 497 VTLGALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLM 556

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +++ + KTPGCS +EV    +EF  GD     ++++  ++D +  + K  GY+
Sbjct: 557 RQKGITKTPGCSWIEVENHLHEFHAGDGLCLDSIDLSNIIDLLYEELKREGYV 609


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/555 (36%), Positives = 317/555 (57%), Gaps = 42/555 (7%)

Query: 80  NPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKAC-WQSQSLRVGQQ 138
           NP +++YN +I   S+   +E+  LY  +L  G  P+  TL Y+L+A  + SQ     +Q
Sbjct: 29  NPNLFIYNTLISAFSSLKKIESFYLYNVLLSSGECPDKQTLLYLLQAVNFISQV----KQ 84

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +H  ++ T L S  Y+ NTL+++Y   GL++  H++F     P    D+VS+  +I  Y 
Sbjct: 85  IHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSP----DIVSFNVMIVGYA 140

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           K  +  EA+  F +M    L PD   ++ +L +C +LG++  G  +H ++      +S +
Sbjct: 141 KKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSN 200

Query: 259 VFIHNALIDMYLKC-------------------------------GNIPSARKVFDEMPV 287
           + + NAL+DMY+KC                               G +  AR  F +MP 
Sbjct: 201 LILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPC 260

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           +++VSWNS++ G   RG F    ++   M    + PD  T++ ++++    G L+ G+W 
Sbjct: 261 RDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWA 320

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H ++ +  I  D F+G+AL+DMY KCG I++A  VF+ +  +DV  +T MI GLA HG  
Sbjct: 321 HGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYG 380

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            KAL++FSEM Q  + PD+VTFV VLSACSH+GLV++G K F  M+  Y ++P  EHYGC
Sbjct: 381 SKALELFSEM-QEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTD-YGIEPGVEHYGC 438

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           +VDL  R+G + EA D+I  MP+ P   +WGA+L AC+    VELAEI    L+  +PE 
Sbjct: 439 LVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNLDPEE 498

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
           +G Y L++NIY++  RW  + K+R+ M+ R VKKT GCS V V G  + F   DK HP  
Sbjct: 499 EGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVDGVVHNFISADKCHPGW 558

Query: 588 LEIYKLLDEIMHQSK 602
           ++I  +L+ + ++ K
Sbjct: 559 VDISSILNCLKNEMK 573



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 213/459 (46%), Gaps = 62/459 (13%)

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
           A+    HF  +P    +L  + TLI A+  +    E+   +  +  +   PD   L+ +L
Sbjct: 19  AITLFNHFTPNP----NLFIYNTLISAFSSLK-KIESFYLYNVLLSSGECPDKQTLLYLL 73

Query: 230 SACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
            A + +  +    +IH + I    F+     ++ N LI +YL+ G +  A +VF++MP  
Sbjct: 74  QAVNFISQVK---QIHCQAIVTGLFSFG---YLQNTLIKVYLENGLVRLAHQVFEKMPSP 127

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           ++VS+N MI G   +G   EA+ +F  M GLGL+PD+FT++ +L SC  +G ++ GK VH
Sbjct: 128 DIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVH 187

Query: 349 TYLD--KNHINTDGFIGNALVDMYAKC-------------------------------GR 375
            +++  K  I+++  +GNAL+DMY KC                               G 
Sbjct: 188 GWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGE 247

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           ++QA   F  M CRD+ S+ +++ G A  G      ++  +M    + PD VT + ++SA
Sbjct: 248 LEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSA 307

Query: 436 CSHAGLVEEG-CKHFLDMSRVYNLQPQTEHY--GCMVDLFGRAGLIREALDLIKSMPLVP 492
            + +G +++G   H      V  +Q + + +    ++D++ + G I  A  + K +    
Sbjct: 308 ATESGALDQGRWAH----GWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEIN-KK 362

Query: 493 DAFVWGALLGACKIHAKVELA-EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           D  VW  ++     H     A E+  E      P+ D  ++ + +  S      + +K+ 
Sbjct: 363 DVTVWTTMITGLAFHGYGSKALELFSEMQEDVSPD-DVTFVSVLSACSHSGLVDQGIKVF 421

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEF--RKGDKSHPKTL 588
             M +  ++  PG   VE YG   +   R G  S  K +
Sbjct: 422 SSMTDYGIE--PG---VEHYGCLVDLLARSGRLSEAKDI 455



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 40/219 (18%)

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
           I  SA S   +L L I +      NHF  +P++FI+N LI  +       S +K+     
Sbjct: 5   IYFSAVSHPDNLDLAITLF-----NHFTPNPNLFIYNTLISAF------SSLKKI----- 48

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
                                E+  ++  +   G  PD  TL+ +L +   + ++   K 
Sbjct: 49  ---------------------ESFYLYNVLLSSGECPDKQTLLYLLQA---VNFISQVKQ 84

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           +H       + + G++ N L+ +Y + G +  A  VF  M   D+ S+  MIVG A  G 
Sbjct: 85  IHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGF 144

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
             +A+ +F EM  +G+EPDE T +G+L +C   G V+ G
Sbjct: 145 GLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFG 183


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/623 (34%), Positives = 330/623 (52%), Gaps = 100/623 (16%)

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           ++N   +++N +I+     N P  A  LY+ ML   L  + YT P +++AC   +S    
Sbjct: 38  IENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEA 97

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-------------------- 176
           +QVH + +K    S+VYV NTL+  ++VC  +    ++F+                    
Sbjct: 98  KQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEI 157

Query: 177 ---------FRQHPQA-----------------------------QRDLVSWTTLIQAYV 198
                    + Q P+                              ++D+V+W+ LI  + 
Sbjct: 158 GNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQ 217

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH----RYITDNHFN 254
           + +   EAI +F  M +  +  D ++ V  LSAC+ L  +++G  IH    +  T+++ N
Sbjct: 218 QNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYIN 277

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDE------------------------------ 284
           L       NALI MY KCG+I  ARK+FDE                              
Sbjct: 278 L------QNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFD 331

Query: 285 -MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLEL 343
            MP K+VVSW+SMI+G      F E L +F+ MQ  G KPD+ TLV V+++CA +  LE 
Sbjct: 332 SMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQ 391

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           GKWVH Y+ +N +  +  +G  L+DMY KCG ++ A  VF  M  + + ++ A+I+GLA+
Sbjct: 392 GKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAM 451

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           +G    +LD+FS M +  + P+E+TF+GVL AC H GLV+EG  HF  M   + +QP  +
Sbjct: 452 NGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVK 511

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           HYGCMVDL GRAG ++EA +L+  MP+ PD   WGALLGACK H   E+   V   L+  
Sbjct: 512 HYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIEL 571

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           +P+ DG ++L++NIY+SK +W + L++R  M + +V K PGCS++E  G  +EF  GDK+
Sbjct: 572 QPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKT 631

Query: 584 HPKTLEIYKLLDEIMHQSKNHGY 606
           HP    I  +L E+  + K  GY
Sbjct: 632 HPDMDAIEDMLVEMAMKLKLEGY 654



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 91/424 (21%), Positives = 180/424 (42%), Gaps = 62/424 (14%)

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           I    ++F+F ++     +   W  +I+AY++ + P  A   +  M    L  D     +
Sbjct: 28  IDYTRRIFNFIENT----NCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPL 83

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           ++ ACS         ++H ++    F+   DV++ N LI+ +  C N+  A +VF+E  V
Sbjct: 84  LIQACSIRRSEWEAKQVHNHVLKLGFD--SDVYVRNTLINCFSVCSNMTDACRVFNESSV 141

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
            + VSWNS++AG    G  +EA  I+ +M      P+   +                   
Sbjct: 142 LDSVSWNSILAGYIEIGNVEEAKHIYHQM------PERSIIA------------------ 177

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
                           N+++ ++   G + +A  +F  M  +D+ +++A+I     +   
Sbjct: 178 ---------------SNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMY 222

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY-- 465
            +A+  F  M ++G+  DEV  V  LSAC++  +V  G      +    +L+  TE Y  
Sbjct: 223 EEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG-----KLIHSLSLKIGTESYIN 277

Query: 466 --GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
               ++ ++ + G I  A  L     L+ D   W +++        V+ A+ + +++   
Sbjct: 278 LQNALIYMYSKCGDIMVARKLFDEAYLL-DLISWNSMISGYLKCNLVDNAKAIFDSM--- 333

Query: 524 EPEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKVK--KTPGCSLVEVYGEFYEFRKG 580
            PE D  ++  M + Y+  + + E L L ++M+    K  +T   S++          +G
Sbjct: 334 -PEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG 392

Query: 581 DKSH 584
              H
Sbjct: 393 KWVH 396



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 12/234 (5%)

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
           +I   R++F+ +   N   WN MI           A  +++ M    L  D++T   ++ 
Sbjct: 27  HIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQ 86

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +C+        K VH ++ K   ++D ++ N L++ ++ C  +  A  VF      D  S
Sbjct: 87  ACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVS 146

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           + +++ G    G   +A  I+ +M +  I       V         GLV E CK F +M 
Sbjct: 147 WNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIV----LFGMRGLVVEACKLFDEM- 201

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGAC 504
               L+     +  ++  F +  +  EA+     M    ++ D  V  + L AC
Sbjct: 202 ----LEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSAC 251


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/626 (36%), Positives = 344/626 (54%), Gaps = 39/626 (6%)

Query: 16  INTFQQL-SLLHQSPRLESSKSVGQLKQFHAFIIKTG--SPQHQTQIL--YDKIISLSRG 70
           +NT Q L   L Q+P   S KS  Q KQ HA I++T   SP   + IL  Y  +  L   
Sbjct: 1   MNTTQNLCKTLLQNP--SSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHDS 58

Query: 71  NEIENLSLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ 129
             I N     P    +  II+C  S+   L +++ + +ML  G  P+    P VLK+C  
Sbjct: 59  LLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTL 118

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH---KLFH---------- 176
            + LR G+ VH   ++  +  ++Y  N LM +Y+    ++ V+   K+F           
Sbjct: 119 MKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSK 178

Query: 177 --------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
                         F   P+  RD+VSW T+I    +     +A++   +M  A+LRPD 
Sbjct: 179 KEKESYYLGSLRKVFEMMPK--RDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDS 236

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
             L  VL   ++  +L  G +IH Y   N ++   DVFI ++LIDMY KC  +  + +VF
Sbjct: 237 FTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYD--ADVFIGSSLIDMYAKCTRVDDSCRVF 294

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
             +P  + +SWNS+IAG    G F E L  F++M    +KP+  +   ++ +CA++  L 
Sbjct: 295 YMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLH 354

Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
           LGK +H Y+ ++  + + FI +ALVDMYAKCG I  A  +F  M+  D+ S+TAMI+G A
Sbjct: 355 LGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYA 414

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
           +HG A+ A+ +F  M   G++P+ V F+ VL+ACSHAGLV+E  K+F  M++ Y + P  
Sbjct: 415 LHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGL 474

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
           EHY  + DL GR G + EA + I  M + P   VW  LL AC++H  +ELAE V + L  
Sbjct: 475 EHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFT 534

Query: 523 FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDK 582
            +P+  GAY+L++NIYS+  RWK+A KLR  M+++ +KK P CS +E+  + + F  GDK
Sbjct: 535 VDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDK 594

Query: 583 SHPKTLEIYKLLDEIMHQSKNHGYIL 608
           SHP    I + L  ++ Q +  GY+L
Sbjct: 595 SHPYYDRINEALKVLLEQMEREGYVL 620


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/484 (40%), Positives = 291/484 (60%), Gaps = 7/484 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+AC     + +G+ VH   +K  +       NTL+ +YA CG++     +F       
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDL----M 59

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
           + R +V+WT+LI AY +     EAI  F +M +  + PD   +  VL AC+  G L  G 
Sbjct: 60  SVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGK 119

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            +H YI +N  ++  ++F+ NAL+DMY KCG++  A  VF EMPVK+++SWN+MI G + 
Sbjct: 120 DVHNYIREN--DMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSK 177

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
                EAL +F  M  L +KPD  TL C+L +CA++  L+ GK VH ++ +N   +D  +
Sbjct: 178 NSLPNEALSLFGDMV-LEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQV 236

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
            NALVDMY KCG    A  +F  +  +D+ ++T MI G  +HG    A+  F+EM Q GI
Sbjct: 237 ANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGI 296

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
           EPDEV+F+ +L ACSH+GL++EG + F  M    N++P+ EHY C+VDL  R+G +  A 
Sbjct: 297 EPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAY 356

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
             IKSMP+ PDA +WGALL  C+IH  V+LAE V E++   EPE  G Y+L+ N Y+   
Sbjct: 357 KFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAE 416

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           +W+E  KLR+K+  R +KK PGCS +EV  + + F  G+ SHP+  +I  LL  +  + K
Sbjct: 417 KWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMK 476

Query: 603 NHGY 606
             GY
Sbjct: 477 EEGY 480



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 171/307 (55%), Gaps = 9/307 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EAI L+ EM  +G+ P+ +T+  VL AC  + SL  G+ VH Y  +  + SN++V N LM
Sbjct: 82  EAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALM 141

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG ++  + +  F + P   +D++SW T+I  Y K   P EA+  F DM    ++
Sbjct: 142 DMYAKCGSMEDANSV--FLEMP--VKDIISWNTMIGGYSKNSLPNEALSLFGDMV-LEMK 196

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PDG  L  +L AC+ L  L  G ++H +I  N F    D  + NAL+DMY+KCG    AR
Sbjct: 197 PDGTTLACILPACASLASLDRGKEVHGHILRNGF--FSDQQVANALVDMYVKCGVPVLAR 254

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +FD +P K++++W  MIAG    G    A+  F  M+  G++PD+ + + +L +C++ G
Sbjct: 255 LLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSG 314

Query: 340 WLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAM 397
            L+ G ++ +   D+ ++         +VD+ A+ G++  A+   +SM    D   + A+
Sbjct: 315 LLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGAL 374

Query: 398 IVGLAIH 404
           + G  IH
Sbjct: 375 LSGCRIH 381



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 150/289 (51%), Gaps = 15/289 (5%)

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDN--HFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
           +V +L AC+  GD+SLG  +H        H+  +      N L+DMY KCG +  A  VF
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTT----FCNTLLDMYAKCGVLDGAILVF 56

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
           D M V+ VV+W S+IA     G   EA+ +F  M   G+ PD FT+  VL++CA  G LE
Sbjct: 57  DLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLE 116

Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
            GK VH Y+ +N + ++ F+ NAL+DMYAKCG ++ A  VF  M  +D+ S+  MI G +
Sbjct: 117 NGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYS 176

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK---HFLDMSRVYNLQ 459
            +    +AL +F +M  + ++PD  T   +L AC+    ++ G +   H L      + Q
Sbjct: 177 KNSLPNEALSLFGDMV-LEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQ 235

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
                   +VD++ + G+   A  L   +P   D   W  ++    +H 
Sbjct: 236 VANA----LVDMYVKCGVPVLARLLFDMIP-TKDLITWTVMIAGYGMHG 279


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/522 (40%), Positives = 303/522 (58%), Gaps = 43/522 (8%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV--YVFNTLMRLYAVCGLIKAVHK 173
           NT T  ++L+ C   + L+   Q+H  ++   LL +   ++   L+  Y   G      K
Sbjct: 253 NTQTFYFLLQKCGSLEKLK---QIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQK 309

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
           +F+  Q+P    D+VSWT LI  Y+    P +A   F  +  + LRPD   +V  +SAC 
Sbjct: 310 VFNHIQNP----DIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACG 365

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY------------------------ 269
              DLS G  +H  +    F L  D  + NALIDMY                        
Sbjct: 366 HRKDLSNGRIVHGMVF--RFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSW 423

Query: 270 -------LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
                  +KC +I +AR++FDEMP++N VSW +MI G          L++F+ M+  G  
Sbjct: 424 TSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKD 483

Query: 323 -PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
            P   T+V VL+ CA+IG  +LG  VH Y++K +++ D  + NAL+DMYAK G +  A  
Sbjct: 484 WPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALK 543

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           +F+ M  RDV+S+T MI GLA+HGK   AL+ FS+MS+ G  P+EVT + VLSACSHAGL
Sbjct: 544 IFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGL 603

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           V EG   F  M + + ++P+ +HYGCMVDL GRAGL+REA +LI+ MP+ PD+ +W +LL
Sbjct: 604 VVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLL 663

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
            AC +H  + LAE+  + ++  EP+ DG YIL+ NIY S +RW++ALK RK M++R+VKK
Sbjct: 664 SACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKK 723

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603
            PGCS VEV G  +EF   D  H    ++Y +L+ I  Q K+
Sbjct: 724 KPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVLEAITEQMKD 765



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 200/439 (45%), Gaps = 53/439 (12%)

Query: 31  LESSKSVGQLKQFHAFIIKTG----SPQHQTQILYDKIISLSRGNEIENL--SLQNPQVY 84
           L+   S+ +LKQ H   +  G      QH    L +    L    + + +   +QNP + 
Sbjct: 261 LQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIV 320

Query: 85  LYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            +  +I   L  + P +A +++  +   GL P+++ +   + AC   + L  G+ VH   
Sbjct: 321 SWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMV 380

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------------------------- 176
            +  L S+  V N L+ +Y+  G I+    +F                            
Sbjct: 381 FRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAAR 440

Query: 177 --FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACS 233
             F + P   R+ VSWT +I  YV+ + P   +  F +M  +    P  + +V VLS C+
Sbjct: 441 RIFDEMP--MRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCA 498

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
            +G   LG  +H Y+  N  NL  DV ++NAL+DMY K G +  A K+F EMP ++V SW
Sbjct: 499 DIGAFDLGSSVHGYV--NKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSW 556

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-----KWVH 348
            +MI+GL   G+   AL+ F  M   G  P++ TL+ VL++C++ G +  G     K V 
Sbjct: 557 TTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQ 616

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKA 407
            +  K  I   G     +VD+  + G + +A  +   M  + D   + +++    +HG  
Sbjct: 617 CHGIKPKIQHYG----CMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNL 672

Query: 408 WKALDIFSEMSQVGIEPDE 426
             AL   +    + +EPD+
Sbjct: 673 --ALAEMAGKMIIELEPDD 689


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 333/581 (57%), Gaps = 17/581 (2%)

Query: 22  LSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQIL--YDKIISLSRGNEI-EN 75
           LSL H++  L S  + G+L   H + +KTG   S    + +L  Y K   +  G  +   
Sbjct: 119 LSLAHKACGLNSDVNYGEL--LHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHE 176

Query: 76  LSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
           + ++N  V  +  II  L  A    EA+  + EM    +  ++YT    LKAC  S +L 
Sbjct: 177 MPMRN--VVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALN 234

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
            G+++HA +MK     + +V NTL  +Y  CG ++    LF       + RD+VSWTT+I
Sbjct: 235 YGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFE----KMSMRDVVSWTTII 290

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
              V+M     A+ +F  M ++++ P+      V+S C+ L  +  G ++H  I   H  
Sbjct: 291 TTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALIL--HLG 348

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           L+  + + N+++ MY KCG + S+  +F EM  +++VSW+++IAG +  G   EA ++  
Sbjct: 349 LAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLS 408

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            M+  G KP +F L  VL++C N+  LE GK +H Y+    +     + +AL++MY KCG
Sbjct: 409 WMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCG 468

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            I++A  +F + +  D+ S+TAMI G A HG + + +D+F ++ +VG+ PD VTF+GVLS
Sbjct: 469 SIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLS 528

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           ACSHAGLV+ G ++F  MS+ Y + P  EHYGCM+DL  RAG + +A  +I++MP   D 
Sbjct: 529 ACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDD 588

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            VW  LL AC++H  VE      E +++ EP   G +I + NIY+SK +W+EA  +RK M
Sbjct: 589 VVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLM 648

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           K + V K PG S ++V    + F  GD+SHP+  +IY +LD
Sbjct: 649 KSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLD 689



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 150/537 (27%), Positives = 265/537 (49%), Gaps = 64/537 (11%)

Query: 12  RYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGN 71
           R ND N  Q +  + Q+   ES+K   QLK+    ++KTG   +  + ++DK   +S+ +
Sbjct: 32  RSND-NLSQNIHFISQTDLPESNK---QLKE----LVKTGHLGNARR-MFDK---MSQKD 79

Query: 72  EIENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIK-GLLPNTYTLPYVLKACWQ 129
           EI            +  +I    NAN   EA+ L++ M ++ GL  + + L    KAC  
Sbjct: 80  EIS-----------WTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGL 128

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
           +  +  G+ +H Y++KT L+++V+V + L+ +Y   G I    ++FH  + P   R++VS
Sbjct: 129 NSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFH--EMP--MRNVVS 184

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           WT +I   V+  Y  EA++ F +M ++ +  D     I L AC+  G L+ G +IH    
Sbjct: 185 WTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAM 244

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
              F++S   F+ N L  MY KCG +     +F++M +++VVSW ++I  L   GQ + A
Sbjct: 245 KKGFDVSS--FVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECA 302

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           +  F RM+   + P+++T   V++ CAN+  +E G+ +H  +    +     + N+++ M
Sbjct: 303 VQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTM 362

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           YAKCG++  +  +F  M  RD+ S++ +I G +  G   +A ++ S M   G +P E   
Sbjct: 363 YAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFAL 422

Query: 430 VGVLSACSHAGLVEEG----------------------------CKHFLDMSRVYNLQPQ 461
             VLSAC +  ++E G                            C    + SR+++    
Sbjct: 423 ASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEN 482

Query: 462 TE--HYGCMVDLFGRAGLIREALDLIKSMPLV---PDAFVWGALLGACKIHAKVELA 513
            +   +  M++ +   G  RE +DL + +P V   PD+  +  +L AC     V+L 
Sbjct: 483 DDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLG 539


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/541 (38%), Positives = 314/541 (58%), Gaps = 40/541 (7%)

Query: 102 IALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           + LYR +L  G   P+  T P++LKAC + +    G    A+ ++  L S+V+V N    
Sbjct: 109 LPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATH 168

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC--QANL 218
             ++ G ++   +LF   + P   RDLVSW TLI  YV+   P EA+  F+ M    A +
Sbjct: 169 FLSIRGPMEDARRLFD--RSPV--RDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVV 224

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP-- 276
           RPD + ++  +S C ++ DL LG ++H ++  +   +S  V + NAL+DMY+KCG++   
Sbjct: 225 RPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSD--GVSCTVRLMNALMDMYIKCGSLEMA 282

Query: 277 -----------------------------SARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
                                         ARKVFDEMP ++V  WN+++ G     Q K
Sbjct: 283 KSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCK 342

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           EAL +F  MQ   + PD+ T+V +L +C+ +G LE+G WVH Y++K+ +     +G +L+
Sbjct: 343 EALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLI 402

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           DMYAKCG I++A  +F+ +  ++  ++TAMI GLA HG A +A++ F  M ++G +PDE+
Sbjct: 403 DMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEI 462

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           TF+GVLSAC HAGLV+EG + F  M   Y+L+ + +HY CM+DL GRAG + EA  L+ +
Sbjct: 463 TFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNT 522

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
           MP+ PDA VWGA+  AC++   + L E     LV  +P   G Y+L+ N+Y+  N  K+A
Sbjct: 523 MPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKA 582

Query: 548 LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            K+R  M+   V+K PGCS +E+ G  +EF   DKSH  +  IY  L EI  Q K+   +
Sbjct: 583 DKVRAMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHMDSHAIYDCLHEITLQIKHTADL 642

Query: 608 L 608
           L
Sbjct: 643 L 643



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 110/209 (52%), Gaps = 8/209 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA++L+ EM    ++P+  T+  +L AC Q  +L +G  VH Y  K  L+ +V +  +L+
Sbjct: 343 EALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLI 402

Query: 160 RLYAVCGLI-KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
            +YA CG I KA+H    F++ P  +++ ++WT +I       +  EAI  F  M +   
Sbjct: 403 DMYAKCGNIEKAIHI---FKEIP--EKNALTWTAMICGLANHGHANEAIEHFRTMIELGQ 457

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           +PD +  + VLSAC   G +  G +    + +  ++L   +  ++ +ID+  + G++  A
Sbjct: 458 KPDEITFIGVLSACCHAGLVKEGREFFS-LMETKYHLERKMKHYSCMIDLLGRAGHLDEA 516

Query: 279 RKVFDEMPVK-NVVSWNSMIAGLTHRGQF 306
            ++ + MP++ + V W ++      +G  
Sbjct: 517 EQLVNTMPMEPDAVVWGAIFFACRMQGNI 545


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/522 (40%), Positives = 304/522 (58%), Gaps = 43/522 (8%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV--YVFNTLMRLYAVCGLIKAVHK 173
           NT T  ++L+ C   + L+   Q+H  ++   LL +   ++   L+  Y   G      K
Sbjct: 2   NTQTFYFLLQKCGSLEKLK---QIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQK 58

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
           +F+  Q+P    D+VSWT LI  Y+    P +A   F  +  + LRPD   +V  +SAC 
Sbjct: 59  VFNHIQNP----DIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACG 114

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY------------------------ 269
              DLS G  +H  +    F L  D  + NALIDMY                        
Sbjct: 115 HRKDLSNGRIVHGMVF--RFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSW 172

Query: 270 -------LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
                  +KC +I +AR++FDEMP++N VSW +MI G          L++F+ M+  G  
Sbjct: 173 TSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKD 232

Query: 323 -PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
            P   T+V VL+ CA+IG  +LG  VH Y++K +++ D  + NAL+DMYAK G +  A  
Sbjct: 233 WPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALK 292

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           +F+ M  RDV+S+T MI GLA+HGK   AL+ FS+MS+ G+ P+EVT + VLSACSHAGL
Sbjct: 293 IFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGL 352

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           V EG   F  M + + ++P+ +HYGCMVDL GRAGL+REA +LI+ MP+ PD+ +W +LL
Sbjct: 353 VVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLL 412

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
            AC +H  + LAE+  + ++  EP+ DG YIL+ NIY S +RW++ALK RK M++R+VKK
Sbjct: 413 SACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKK 472

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603
            PGCS VEV G  +EF   D  H    ++Y +L+ I  Q K+
Sbjct: 473 KPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVLEAITEQMKD 514



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 201/439 (45%), Gaps = 53/439 (12%)

Query: 31  LESSKSVGQLKQFHAFIIKTG----SPQHQTQILYDKIISLSRGNEIENL--SLQNPQVY 84
           L+   S+ +LKQ H   +  G      QH    L +    L    + + +   +QNP + 
Sbjct: 10  LQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIV 69

Query: 85  LYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            +  +I   L  + P +A +++  +   GL P+++ +   + AC   + L  G+ VH   
Sbjct: 70  SWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMV 129

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------------------------- 176
            +  L S+  V N L+ +Y+  G I+    +F                            
Sbjct: 130 FRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAAR 189

Query: 177 --FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACS 233
             F + P   R+ VSWT +I  YV+ + P   +  F +M  +    P  + +V VLS C+
Sbjct: 190 RIFDEMP--MRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCA 247

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
            +G   LG  +H Y+  N  NL  DV ++NAL+DMY K G +  A K+F EMP ++V SW
Sbjct: 248 DIGAFDLGSSVHGYV--NKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSW 305

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-----KWVH 348
            +MI+GL   G+   AL+ F  M   G+ P++ TL+ VL++C++ G +  G     K V 
Sbjct: 306 TTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQ 365

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKA 407
            +  K  I   G     +VD+  + G + +A  +   M  + D   + +++    +HG  
Sbjct: 366 CHGIKPKIQHYG----CMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNL 421

Query: 408 WKALDIFSEMSQVGIEPDE 426
             AL   +    + +EPD+
Sbjct: 422 --ALAEMAGKMIIELEPDD 438


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/570 (37%), Positives = 318/570 (55%), Gaps = 46/570 (8%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           S+  P    +N ++   +  +  E ++  + +M  +  L N Y+    L AC     L +
Sbjct: 106 SMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNM 165

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G QVHA   K+   ++VY+ + L+ +Y+ CG +    ++F        +R+LV+W +LI 
Sbjct: 166 GTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFS----GMIERNLVTWNSLIT 221

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFN 254
            Y +    +EA+  F  M  + L PD + L  V+SAC+ L  L  G++IH R +  N F 
Sbjct: 222 CYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFR 281

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS---------------------- 292
              D+ + NAL+DMY KC  +  AR+VFD M ++NVVS                      
Sbjct: 282 --DDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFS 339

Query: 293 ---------WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLEL 343
                    WN++IAG T  G+ +EAL +FR ++   + P  +T   +L++CAN+  L L
Sbjct: 340 KMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLL 399

Query: 344 GKWVHTYLDKNHIN------TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           G+  HT++ K          +D F+GN+L+DMY KCG I+    VF  MK RD  S+ A+
Sbjct: 400 GRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAI 459

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           IVG A +G   +AL IF +M   G +PD VT +GVL ACSHAGLVEEG  +F  M   + 
Sbjct: 460 IVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HG 518

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           L P  +HY CMVDL GRAG + EA +LI++MP+ PDA VWG+LL ACK+H  +E+ +   
Sbjct: 519 LIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAA 578

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           E L+  +P   G Y+L++N+Y+   RW + +++RK M+++ V K PGCS +EV    + F
Sbjct: 579 EKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVF 638

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              DKSHP   +IY +L  +  Q K  GYI
Sbjct: 639 LVKDKSHPHRKQIYSVLKMLTEQMKRVGYI 668



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 194/377 (51%), Gaps = 39/377 (10%)

Query: 109 LIKGL-LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           L++ L LPN+     +L +C +S+S R  + VHA  + T     +++ N L+ +Y  C  
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65

Query: 168 IKAVHKLFHFRQHPQ-----------------------------AQRDLVSWTTLIQAYV 198
           +    KLF   + PQ                              + D  SW +++  + 
Sbjct: 66  LDDARKLFD--RMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFA 123

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           + D   E++  F  M + +   +       LSAC+ L DL++G ++H  ++ + +  S D
Sbjct: 124 QHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRY--STD 181

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           V++ +ALIDMY KCG++  A +VF  M  +N+V+WNS+I      G   EAL++F RM  
Sbjct: 182 VYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMD 241

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRID 377
            GL+PD+ TL  V+++CA++  L+ G  +H  + K N    D  +GNALVDMYAKC +++
Sbjct: 242 SGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVN 301

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
           +A  VF  M  R+V S T+M+ G A       A  +FS+M+Q  +    V++  +++  +
Sbjct: 302 EARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGYT 357

Query: 438 HAGLVEEGCKHFLDMSR 454
             G  EE  + F  + R
Sbjct: 358 QNGENEEALRLFRLLKR 374



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 192/406 (47%), Gaps = 46/406 (11%)

Query: 42  QFHAFIIKTGSPQHQTQI--------LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCL 93
           Q HA + K+   ++ T +        +Y K  S++   E+ +  ++   V  +N +I C 
Sbjct: 168 QVHALVSKS---RYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLV-TWNSLITCY 223

Query: 94  SNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
               P  EA+ ++  M+  GL P+  TL  V+ AC    +L+ G Q+HA  +KT    + 
Sbjct: 224 EQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDD 283

Query: 153 YVF-NTLMRLYAVCGLIKAVHKLF---------------------------HFRQHPQAQ 184
            V  N L+ +YA C  +    ++F                            F      Q
Sbjct: 284 LVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQ 343

Query: 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI 244
           R++VSW  LI  Y +     EA+  F  + + ++ P       +LSAC+ L DL LG + 
Sbjct: 344 RNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQA 403

Query: 245 HRYITDNHFNL----SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           H ++    F        D+F+ N+LIDMY+KCG+I    +VF++M  ++ VSWN++I G 
Sbjct: 404 HTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGY 463

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
              G   EAL IFR+M   G KPD  T++ VL +C++ G +E G+     ++++ +    
Sbjct: 464 AQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLK 523

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
                +VD+  + G +++A  +  +M    D   + +++    +HG
Sbjct: 524 DHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHG 569



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 166/354 (46%), Gaps = 45/354 (12%)

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV------------- 290
           +H  I    F++  ++FI N LID+Y KC  +  ARK+FD MP +N              
Sbjct: 37  VHARILMTQFSM--EIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKS 94

Query: 291 ------------------VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
                              SWNSM++G     +F+E+L+ F +M       ++++    L
Sbjct: 95  GFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSAL 154

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           ++CA +  L +G  VH  + K+  +TD ++G+AL+DMY+KCG +  A  VF  M  R++ 
Sbjct: 155 SACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLV 214

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           ++ ++I     +G A +AL++F  M   G+EPDEVT   V+SAC+    ++EG +    +
Sbjct: 215 TWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARV 274

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL----VPDAFVWGALLGACKIHA 508
            +    +        +VD++ +   + EA  +   M +       + V G    A    A
Sbjct: 275 VKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAA 334

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           +   +++   N+V +     G        Y+     +EAL+L + +K   +  T
Sbjct: 335 RFMFSKMTQRNVVSWNALIAG--------YTQNGENEEALRLFRLLKRESIWPT 380


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/583 (34%), Positives = 330/583 (56%), Gaps = 20/583 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQ--TQILYDKIISLSRGNEIENL--SLQNPQVYLY 86
           + S K+  Q+ Q  A II  G   ++  T  L     +L R      L   + +P + L+
Sbjct: 108 MRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALW 167

Query: 87  NFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           N + +  + +    E + L+ +M    + PN +T P VLK+C +  +L  G+QVH + +K
Sbjct: 168 NSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIK 227

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
                N +V  TL+ +Y+  G +   +K+F        +R++V+WT++I  Y+ +     
Sbjct: 228 CGFRGNPFVGTTLIDMYSAGGTVGDAYKIFC----EMFERNVVAWTSMINGYI-LSADLV 282

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           +    FD+       D ++  I++S   + GD+    K+   + +       DV   N +
Sbjct: 283 SARRLFDLAPER---DVVLWNIMVSGYIEGGDMVEARKLFXEMPNR------DVMFWNTV 333

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPD 324
           +  Y   GN+ +   +F+EMP +N+ SWN++I G  H G F E L  F+RM     + P+
Sbjct: 334 LKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPN 393

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
           D TLV VL++CA +G L+LGKWVH Y + + +  + ++GNAL+DMYAKCG I+ A  VFR
Sbjct: 394 DATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFR 453

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            M  +D+ S+  +I GLA+H +   AL++F +M   G +PD +TF+G+L AC+H GLVE+
Sbjct: 454 GMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVED 513

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G  +F  M+  Y + PQ EHYGCMVD+  RAG + +A   ++ MP+  D  +W  LLGAC
Sbjct: 514 GFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGAC 573

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           +I+  VELAE+ ++ L+  EP+    Y++++NIY    RW++  +L+  M++   KK PG
Sbjct: 574 RIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPG 633

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           CSL+EV     EF   D+ HP+  EIY +L  ++   ++ GY+
Sbjct: 634 CSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYV 676


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/493 (40%), Positives = 304/493 (61%), Gaps = 13/493 (2%)

Query: 122 YVLKACWQ-----SQSLRVGQQVHAYSMKTAL-LSNVYVFNTLM-RLYAVCGLIKAVHKL 174
           Y+LK C       + S    +Q+HA+S++  + L+N  +   L+  L + C  +   H++
Sbjct: 37  YILKKCIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQI 96

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F   Q+P    ++ +W T+I+ Y + + P  A+  +  M  + + PD      +L A +K
Sbjct: 97  FSQIQNP----NIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           L D+  G K+H     N F     VF+ N L+ MY  CG+  SA K+F+ M  +N+V+WN
Sbjct: 153 LMDVREGEKVHSIAIRNGFE--SLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWN 210

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           S+I G    G+  EAL +FR M   G++PD FT+V +L++CA +G L LG+  H Y+ K 
Sbjct: 211 SVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKV 270

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            ++ +   GNAL+D+YAKCG I QA  VF  M+ + V S+T++IVGLA++G   +AL++F
Sbjct: 271 GLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELF 330

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            E+ + G+ P E+TFVGVL ACSH G+V+EG  +F  M   Y + P+ EHYGCMVDL GR
Sbjct: 331 KELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGR 390

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           AGL+++A + I++MP+ P+A VW  LLGAC IH  + L E+    L++ EP+  G Y+L+
Sbjct: 391 AGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLL 450

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           +N+Y+S+ RW +  K+R+ M    VKKTPG SLVE+    +EF  GD+SHP+T EIY  L
Sbjct: 451 SNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKL 510

Query: 595 DEIMHQSKNHGYI 607
            EI    K  GY+
Sbjct: 511 AEITKLLKLEGYV 523



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 231/449 (51%), Gaps = 63/449 (14%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-------SRGNEIENLSLQNPQV 83
           L  + S  + +Q HAF I+ G P     +    I +L       S  ++I +  +QNP +
Sbjct: 47  LSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFS-QIQNPNI 105

Query: 84  YLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           + +N +I+  + + NP+ A+ LYR+M +  + P+T+T P++LKA  +   +R G++VH+ 
Sbjct: 106 FTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSI 165

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
           +++    S V+V NTL+ +YA CG  ++ HKLF       A+R+LV+W ++I  Y     
Sbjct: 166 AIRNGFESLVFVQNTLVHMYAACGHAESAHKLFEL----MAERNLVTWNSVINGYALNGR 221

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
           P EA+  F +M    + PDG  +V +LSAC++LG L+LG + H Y+      L  ++   
Sbjct: 222 PNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVK--VGLDGNLHAG 279

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           NAL+D+Y KCG+I  A KVFDEM  K+VVSW S+I GL   G  KEAL++F+ ++  GL 
Sbjct: 280 NALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLM 339

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P + T V VL +C++                                   CG +D+ F  
Sbjct: 340 PSEITFVGVLYACSH-----------------------------------CGMVDEGFDY 364

Query: 383 FRSMK-----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
           F+ MK        +  Y  M+  L   G   +A +    M    ++P+ V +  +L AC+
Sbjct: 365 FKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMP---MQPNAVVWRTLLGACT 421

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
             G +  G     +++R   LQ + +H G
Sbjct: 422 IHGHLALG-----EVARAQLLQLEPKHSG 445


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/562 (36%), Positives = 315/562 (56%), Gaps = 39/562 (6%)

Query: 78  LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + NP     N +++  S    P   ++LY  +   G   + ++ P +LKA  +  +L +G
Sbjct: 75  IPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLG 134

Query: 137 QQVHAYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            ++H  + K     ++ ++ + L+ +YA CG I     LF    H    RD+V+W  +I 
Sbjct: 135 LEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSH----RDVVTWNIMID 190

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            Y +  +    +  + +M  +   PD +IL  VLSAC+  G+LS G  IH++I DN F +
Sbjct: 191 GYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRV 250

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK--------------------------- 288
                I  +L++MY  CG +  AR+V+D++P K                           
Sbjct: 251 GSH--IQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDR 308

Query: 289 ----NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
               ++V W++MI+G     Q  EAL +F  MQ   + PD  T++ V+++CAN+G L   
Sbjct: 309 MVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQA 368

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           KW+HTY DKN       I NAL+DMYAKCG + +A  VF +M  ++V S+++MI   A+H
Sbjct: 369 KWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMH 428

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G A  A+ +F  M +  IEP+ VTF+GVL ACSHAGLVEEG K F  M   + + PQ EH
Sbjct: 429 GDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREH 488

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           YGCMVDL+ RA  +R+A++LI++MP  P+  +WG+L+ AC+ H ++EL E     L+  E
Sbjct: 489 YGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELE 548

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           P+ DGA ++++NIY+ + RW +   +RK MK + V K   CS +EV  E + F   D+ H
Sbjct: 549 PDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYH 608

Query: 585 PKTLEIYKLLDEIMHQSKNHGY 606
            ++ EIYK LD ++ Q K  GY
Sbjct: 609 KQSDEIYKKLDAVVSQLKLVGY 630


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/623 (36%), Positives = 347/623 (55%), Gaps = 37/623 (5%)

Query: 4   PLTVASGSRYNDINTF-QQLSLLHQSPR----------LESSKSVGQLKQFHAFIIKTGS 52
           P T+   S +   NTF    +L  + PR          L S K+V  L++  A II  G 
Sbjct: 36  PPTLTFYSEWARNNTFFIDDTLTQKHPRWVLEEHFISLLRSCKTVALLQKVQAQIITHGF 95

Query: 53  PQHQTQILYDKIISLSRGNEIENLS-----LQNPQVYLYNFIIQC-LSNANPLEAIALYR 106
            Q+   +  + + S     ++ +         +P+V L+N I +    NA   E + L+ 
Sbjct: 96  -QYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFG 154

Query: 107 EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
           +M    + PN +T P VLK+C +  +   G+++H   +K  L  N +V  TL+ +Y+   
Sbjct: 155 KMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGR 214

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
            I + +KLF        +R++V+WT++I  Y+  +    A    FD+       D ++  
Sbjct: 215 AIGSAYKLFV----GMLERNIVAWTSMISGYILCNRVALA-RRLFDLAPER---DVVLWN 266

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSP--DVFIHNALIDMYLKCGNIPSARKVFDE 284
           I++S   ++GD+    K+        F+  P  D    N +++ Y   G++ +  ++F+E
Sbjct: 267 IMVSGYIEIGDMKAARKL--------FDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEE 318

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK-PDDFTLVCVLNSCANIGWLEL 343
           MP +NV SWN +I G  H G F E L  F+RM   GL  P+D TLV VL++CA +G L+L
Sbjct: 319 MPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDL 378

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           GKWVH Y          ++GNAL+DMY+KCG I+ A  VF SM  +D+ ++ +MI GLA 
Sbjct: 379 GKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLAT 438

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           HG    AL +F +M   G +PD +TF+GVL +C+H GLVEEG  +F  M   Y++ PQ E
Sbjct: 439 HGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIE 498

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           HYGCMVDLFGRAGL+  A++ +K MP+  DA +W ALLGAC+I+  ++LAE+ ++ L+  
Sbjct: 499 HYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVL 558

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           EP+    Y+L++NIY    RWK+  +L+  M++   KK PGCSL+EV     EF   D+ 
Sbjct: 559 EPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDER 618

Query: 584 HPKTLEIYKLLDEIMHQSKNHGY 606
           H ++ EIY +L  +M   ++ GY
Sbjct: 619 HSQSKEIYGVLKGLMKLLRSFGY 641


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/561 (37%), Positives = 321/561 (57%), Gaps = 58/561 (10%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGN-EIENLS--------LQNPQ 82
           E +KS+ +++Q HAF++KTG   H T     K+++ +  N E + +S        +++P 
Sbjct: 17  ERAKSLLEIQQAHAFMLKTG-LFHDT-FSASKLVAFAATNPEPKTVSYAHSILNRIESPN 74

Query: 83  VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
            + +N +I+  +N++ P  A+ ++REML+  + P+ Y+  +VLKAC        G+Q+H 
Sbjct: 75  GFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHG 134

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             MK+ L+++V+V NTL+ +Y   G  +   K+    + P   RD VSW +L+ AY+   
Sbjct: 135 LFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLD--RMPV--RDAVSWNSLLSAYLDKG 190

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
              EA   F +M + N+                                           
Sbjct: 191 LVEEARALFDEMEERNVES----------------------------------------- 209

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLG 320
            N +I  Y   G +  AR+VFD MPVK+VVSWN+M+    H G + E L++F  M     
Sbjct: 210 WNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSA 269

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
            +PD FTLV VL++CA++G L  G+WVH Y+DK+ I  +GF+  ALVDMY+KCG+ID+A 
Sbjct: 270 ERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKAL 329

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VFR    RDV ++ ++I GL++HG    AL+IFSEM   G +P+ +TF+GVLSAC+H G
Sbjct: 330 EVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVG 389

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           L+++  K F  M+ VY ++P  EHYGCMVDL GR G   EA +L+  +P    + +  +L
Sbjct: 390 LLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLESL 449

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           LGACK   K+E AE +   L+   P     Y+ M+N+Y+S  RW EA+++R KM+  +VK
Sbjct: 450 LGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKMRAERVK 509

Query: 561 KTPGCSLVEVYGEFYEFRKGD 581
           K PGCS++EV G  +EF  G+
Sbjct: 510 KNPGCSMIEVDGVVHEFLAGE 530


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/536 (37%), Positives = 310/536 (57%), Gaps = 40/536 (7%)

Query: 102 IALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           + LYR +L  G   P+  T P+++KAC + Q    G  V  +  K    ++V+V N  M 
Sbjct: 105 LPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMH 164

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN--L 218
            ++V G +    +LF         RD+VSW TLI  YV+   P EA+  F+ + +    +
Sbjct: 165 FWSVRGPMAFARRLFD----ESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAV 220

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP-- 276
           RPD + ++  +S C+++GDL LG ++H ++ +     +  V + NA++DMY+KCG++   
Sbjct: 221 RPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCT--VRLMNAVMDMYVKCGSLELA 278

Query: 277 -----------------------------SARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
                                         AR +FDEMP ++V  WN+++AG     Q K
Sbjct: 279 NSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGK 338

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           EA+ +F  MQ   + P++ T+V +L++C+ +G LE+G WVH Y+D++ ++    +G +LV
Sbjct: 339 EAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLV 398

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           DMYAKCG I +A  VF  +  ++  ++T+MI GLA HG A +A++ F  M  +G++PDE+
Sbjct: 399 DMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEI 458

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           TF+GVLSAC HAGLVE G + F  M   Y+L+ + +HY CM+DL GRAG + EA  L+ +
Sbjct: 459 TFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNA 518

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
           MP+ PDA VWGAL  AC++H  + L E     LV  +P   G Y+L+ N+Y+  N  K+A
Sbjct: 519 MPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKA 578

Query: 548 LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603
            K+R  M+   V+K PGCS +E+ G  +EF   DKSH  T  IY  L EI  Q ++
Sbjct: 579 DKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTNAIYDCLHEITLQMRH 634



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 134/297 (45%), Gaps = 35/297 (11%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N    EAIAL+ EM    + PN  T+  +L AC Q  +L +G  VH Y  +  L  +V
Sbjct: 332 VQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSV 391

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            +  +L+ +YA CG IK    +  F + P   ++ ++WT++I       +  EAI  F  
Sbjct: 392 ALGTSLVDMYAKCGNIKKA--ICVFNEIP--VQNALTWTSMICGLANHGHADEAIEYFQR 447

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M    L+PD +  + VLSAC   G +  G +    +    ++L   +  ++ +ID+  + 
Sbjct: 448 MIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAK-YHLERKMKHYSCMIDLLGRA 506

Query: 273 GNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD---FTL 328
           G++  A ++ + MP+  + V W ++       G     L     M+ + L P D   + L
Sbjct: 507 GHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNI--TLGEKAAMKLVELDPSDSGIYVL 564

Query: 329 VCVLNSCANI----------------------GWLELGKWVHTYL--DKNHINTDGF 361
           +  + + AN+                        +EL   VH ++  DK+H++T+  
Sbjct: 565 LANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTNAI 621


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/539 (37%), Positives = 313/539 (58%), Gaps = 37/539 (6%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+ EM+  G+ PN  T+   + AC + + L +G++V     +  + SN  V N L+
Sbjct: 206 EAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALL 265

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y  CG + AV ++F       + ++LV + T++  YV+     E ++   +M Q   R
Sbjct: 266 DMYMKCGDMYAVREIFD----EFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQR 321

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + ++  ++AC++LGDLS+G   H Y+  N      +  I NA+IDMY+KCG   +A 
Sbjct: 322 PDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDN--ISNAIIDMYMKCGKREAAC 379

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQ-------------------------------FKE 308
           KVFD M  K VV+WNS+IAGL   G+                               F+E
Sbjct: 380 KVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEE 439

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A+D+ R MQ  G+K D  T+V + ++C  +G L+L KW++TY++KN I+ D  +G ALVD
Sbjct: 440 AIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVD 499

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           M+++CG    A  VF +M+ RDV ++TA I   A+ G A  A+++F EM +  ++ D+  
Sbjct: 500 MFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFV 559

Query: 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
           FV +L+A SH G V++G + F  M +++ + PQ  HYGCMVDL GRAGL+ EA DL+KSM
Sbjct: 560 FVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSM 619

Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548
           P+ P+  +WG+ L AC+ H  VE A    E + +  PE  G ++L++NIY+S  +W +  
Sbjct: 620 PIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVA 679

Query: 549 KLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           ++R +MKE+  +K  G S +EV+G   EF  GD+SH +  +I  +L EI  +    GY+
Sbjct: 680 RVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYV 738



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 152/547 (27%), Positives = 269/547 (49%), Gaps = 57/547 (10%)

Query: 27  QSPR---LESSKSVGQLKQFHAFIIKTG----------SPQHQTQILYDKIISLSRGNEI 73
           Q P+   L++ K++ +LKQ H  ++K G            Q  T    +  ++  + +E 
Sbjct: 22  QKPKNSSLQTCKTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEG 81

Query: 74  ENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLI-KGLLPNTYTLPYVLKACWQSQS 132
              SL      +  +    L      EAI +Y  M+I  G++P+ +T P++L AC +  +
Sbjct: 82  TKCSLYTCNTLIRGYAASGLCK----EAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMA 137

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
              G QVH   +K  L+ +++V N+L+  YA CG +    K+F        +R++VSWT+
Sbjct: 138 FSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVF----DEMLERNVVSWTS 193

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           LI  Y  ++   EA+  FF+M +  + P+ + +V  +SAC+KL DL LG K+   +T+  
Sbjct: 194 LINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTE-- 251

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
             +  +  + NAL+DMY+KCG++ + R++FDE   KN+V +N++++     G   E L +
Sbjct: 252 LGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVV 311

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
              M   G +PD  T++  + +CA +G L +GK  H Y+ +N +     I NA++DMY K
Sbjct: 312 LDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMK 371

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK-----------------AW------- 408
           CG+ + A  VF SM  + V ++ ++I GL   G+                 +W       
Sbjct: 372 CGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAM 431

Query: 409 -------KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
                  +A+D+  EM   GI+ D VT VG+ SAC + G ++   K         ++   
Sbjct: 432 VQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLA-KWIYTYIEKNDIHID 490

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
            +    +VD+F R G    A+ + ++M    D   W A +    +    + A  + + ++
Sbjct: 491 MQLGTALVDMFSRCGDPLNAMRVFENME-KRDVSAWTAAIRVKAVEGNAKGAIELFDEML 549

Query: 522 RFEPEGD 528
           + + + D
Sbjct: 550 KQDVKAD 556



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 219/464 (47%), Gaps = 42/464 (9%)

Query: 113 LLPNTYTLP--YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC---GL 167
           LLP T   P    L+ C   ++L   +Q+H   +K        VFN + +L A C   G 
Sbjct: 16  LLPTTTQKPKNSSLQTC---KTLIELKQLHCNMLKKG------VFN-INKLIAACVQMGT 65

Query: 168 IKAV-HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA-NLRPDGMIL 225
            +++ + L  F++    +  L +  TLI+ Y       EAI  +  M     + PD    
Sbjct: 66  HESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTF 125

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
             +LSACSK+   S G+++H  +      L  D+F+ N+LI  Y  CG +   RKVFDEM
Sbjct: 126 PFLLSACSKIMAFSEGVQVHGVVV--KMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEM 183

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             +NVVSW S+I G +     KEA+ +F  M  +G++P+  T+VC +++CA +  LELGK
Sbjct: 184 LERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGK 243

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            V   + +  + ++  + NAL+DMY KCG +     +F     +++  Y  ++     HG
Sbjct: 244 KVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHG 303

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
            A + L +  EM Q G  PD+VT +  ++AC+  G +  G       S  Y  +   E  
Sbjct: 304 LAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVG-----KSSHAYVFRNGLERL 358

Query: 466 ----GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA-----EIV 516
                 ++D++ + G    A  +  SM        W +L+       ++ELA     E+ 
Sbjct: 359 DNISNAIIDMYMKCGKREAACKVFDSMS-NKTVVTWNSLIAGLVRDGELELALRIFGEMP 417

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
             NLV +          M       + ++EA+ L ++M+ + +K
Sbjct: 418 ESNLVSWNT--------MIGAMVQASMFEEAIDLLREMQNQGIK 453


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/543 (37%), Positives = 324/543 (59%), Gaps = 16/543 (2%)

Query: 75  NLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133
           N  +    V+ +N +I  L+ + + +EA+  +  M    L PN  T P  +K+C     L
Sbjct: 109 NKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDL 168

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
             G+Q H  ++      +++V + L+ +Y+ CG ++    LF    H    R++VSWT++
Sbjct: 169 HSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISH----RNIVSWTSM 224

Query: 194 IQAYVKMDYPTEAILSF--FDMCQANLRPDGMI------LVIVLSACSKLGDLSLGIKIH 245
           I  YV+ D    A+L F  F + ++    DG +      +V VLSACS++ + S+   +H
Sbjct: 225 ITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVH 284

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
            ++    F    D+ + N L+D Y KCG +  +R+VFD M  ++V+SWNS+IA     G 
Sbjct: 285 GFLIKRGFE--GDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGM 342

Query: 306 FKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
             E+++IF RM   G +  +  TL  VL +CA+ G   LGK +H  + K  + ++ F+G 
Sbjct: 343 STESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGT 402

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
           +++DMY KCG+++ A   F  M+ ++V S++AM+ G  +HG A +AL++F EM+  G++P
Sbjct: 403 SIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKP 462

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           + +TFV VL+ACSHAGL+EEG   F  MS  ++++P  EHYGCMVDL GRAG ++EA DL
Sbjct: 463 NYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDL 522

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
           IK M L PD  VWGALLGAC++H  V+L EI    L   +P+  G Y+L++NIY+   RW
Sbjct: 523 IKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRW 582

Query: 545 KEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
           ++  ++R  MK   + K PG SLV++ G  + F  GD+ HP+  +IY+ L+++  + +  
Sbjct: 583 EDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEV 642

Query: 605 GYI 607
           GY+
Sbjct: 643 GYV 645


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/533 (36%), Positives = 302/533 (56%), Gaps = 42/533 (7%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+  +  M  +G + N Y+   VL AC     +  G QVH+   K+  LS+VY+ + L+
Sbjct: 135 EALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALV 194

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ CG +    ++F         R++VSW +LI  + +     EA+  F  M ++ + 
Sbjct: 195 DMYSKCGNVNDAQRVF----DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVE 250

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + L  V+SAC+ L  + +G ++H  +  N   L  D+ + NA +DMY KC  I  AR
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHGRVVKND-KLRNDIILSNAFVDMYAKCSRIKEAR 309

Query: 280 KVFDEMPV-------------------------------KNVVSWNSMIAGLTHRGQFKE 308
            +FD MP+                               +NVVSWN++IAG T  G+ +E
Sbjct: 310 FIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEE 369

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI------NTDGFI 362
           AL +F  ++   + P  ++   +L +CA++  L LG   H ++ K+          D F+
Sbjct: 370 ALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFV 429

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           GN+L+DMY KCG +++ + VFR M  RD  S+ AMI+G A +G   +AL++F EM + G 
Sbjct: 430 GNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGE 489

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
           +PD +T +GVLSAC HAG VEEG  +F  M+R + + P  +HY CMVDL GRAG + EA 
Sbjct: 490 KPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAK 549

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
            +I+ MP+ PD+ +WG+LL ACK+H  + L + V E L+  EP   G Y+L++N+Y+   
Sbjct: 550 SMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELG 609

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           +W++ + +RK M++  V K PGCS +++ G  + F   DKSHP+  +I+ LLD
Sbjct: 610 KWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLD 662



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 220/454 (48%), Gaps = 74/454 (16%)

Query: 117 TYTLPY--VLKACWQSQ-SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
           T + P+  +L +C +S+ S    + VHA  +K+   + +++ N L+  Y+ CG ++   +
Sbjct: 17  TDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQ 76

Query: 174 LFH-----------------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           +F                              FR  P  +RD  +W +++  + + D   
Sbjct: 77  VFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMP--ERDQCTWNSMVSGFAQHDRCE 134

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EA+  F  M +     +      VLSACS L D++ G+++H  I  + F LS DV+I +A
Sbjct: 135 EALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPF-LS-DVYIGSA 192

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L+DMY KCGN+  A++VFDEM  +NVVSWNS+I      G   EALD+F+ M    ++PD
Sbjct: 193 LVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPD 252

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           + TL  V+++CA++  +++G+ VH  + KN  +  D  + NA VDMYAKC RI +A  +F
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIF 312

Query: 384 RSMKCRDVYSYTAMIVGLAI-------------------------------HGKAWKALD 412
            SM  R+V + T+MI G A+                               +G+  +AL 
Sbjct: 313 DSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALS 372

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHY----GC 467
           +F  + +  + P   +F  +L AC+    +  G + H   +   +  Q   E        
Sbjct: 373 LFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNS 432

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           ++D++ + G + E   + + M +  D   W A++
Sbjct: 433 LIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMI 465



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 211/471 (44%), Gaps = 91/471 (19%)

Query: 2   ASPLTVASGSRYNDINTFQQL-SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL 60
           AS L+  SG   ND+N   Q+ SL+ +SP L        L   ++   K G+  +  Q +
Sbjct: 156 ASVLSACSG--LNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYS---KCGNV-NDAQRV 209

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTYT 119
           +D+              + +  V  +N +I C     P +EA+ +++ ML   + P+  T
Sbjct: 210 FDE--------------MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSN-VYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           L  V+ AC    +++VGQ+VH   +K   L N + + N  + +YA C  IK     F F 
Sbjct: 256 LASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEAR--FIFD 313

Query: 179 QHP-----------------------------QAQRDLVSWTTLIQAYVKMDYPTEAILS 209
             P                              A+R++VSW  LI  Y +     EA+  
Sbjct: 314 SMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSL 373

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP----DVFIHNAL 265
           F  + + ++ P       +L AC+ L +L LG++ H ++  + F        D+F+ N+L
Sbjct: 374 FCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSL 433

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           IDMY+KCG +     VF +M  ++ VSWN+MI G    G   EAL++FR M   G KPD 
Sbjct: 434 IDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDH 493

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
            T++ VL++C + G++E G+   + + ++                         FGV   
Sbjct: 494 ITMIGVLSACGHAGFVEEGRHYFSSMTRD-------------------------FGV--- 525

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
              RD   YT M+  L   G   +A  +  EM    ++PD V +  +L+AC
Sbjct: 526 APLRD--HYTCMVDLLGRAGFLEEAKSMIEEMP---MQPDSVIWGSLLAAC 571



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 181/383 (47%), Gaps = 47/383 (12%)

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303
           +H  +  + F  S ++FI N LID Y KCG++   R+VFD+MP +N+ +WNS++ GLT  
Sbjct: 42  VHASVIKSGF--SNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 304 GQFKEALDIFRRM-------------------------------QGLGLKPDDFTLVCVL 332
           G   EA  +FR M                                  G   ++++   VL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           ++C+ +  +  G  VH+ + K+   +D +IG+ALVDMY+KCG ++ A  VF  M  R+V 
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+ ++I     +G A +ALD+F  M +  +EPDEVT   V+SAC+    ++ G +    +
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP----LVPDAFVWGALLGACKIHA 508
            +   L+         VD++ +   I+EA  +  SMP    +   + + G  + A    A
Sbjct: 280 VKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAA 339

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT--PGCS 566
           ++   ++   N+V +     G        Y+     +EAL L   +K   V  T     +
Sbjct: 340 RLMFTKMAERNVVSWNALIAG--------YTQNGENEEALSLFCLLKRESVCPTHYSFAN 391

Query: 567 LVEVYGEFYEFRKGDKSHPKTLE 589
           +++   +  E   G ++H   L+
Sbjct: 392 ILKACADLAELHLGMQAHVHVLK 414



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 128/260 (49%), Gaps = 20/260 (7%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK------TAL 148
           N    EA++L+  +  + + P  Y+   +LKAC     L +G Q H + +K      +  
Sbjct: 364 NGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGE 423

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             +++V N+L+ +Y  CG ++  + +F        +RD VSW  +I  + +  Y  EA+ 
Sbjct: 424 EDDIFVGNSLIDMYVKCGCVEEGYLVF----RKMMERDCVSWNAMIIGFAQNGYGNEALE 479

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F +M ++  +PD + ++ VLSAC   G +  G      +T + F ++P    +  ++D+
Sbjct: 480 LFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRD-FGVAPLRDHYTCMVDL 538

Query: 269 YLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGL-THRGQFKEALDIFRRMQGLGLKPDDF 326
             + G +  A+ + +EMP++ + V W S++A    HR      L  +   + L ++P + 
Sbjct: 539 LGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNI---TLGKYVAEKLLEVEPSNS 595

Query: 327 TLVCVLNSCANIGWLELGKW 346
               +L++     + ELGKW
Sbjct: 596 GPYVLLSNM----YAELGKW 611



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 117/283 (41%), Gaps = 70/283 (24%)

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGR----------------------------- 375
           ++VH  + K+  + + FI N L+D Y+KCG                              
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 376 --IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
             +D+A  +FRSM  RD  ++ +M+ G A H +  +AL  F+ M + G   +E +F  VL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 434 SACSHAGLVEEG----------------------------CKHFLDMSRVYNLQPQTE-- 463
           SACS    + +G                            C +  D  RV++        
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219

Query: 464 HYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
            +  ++  F + G   EALD+ + M    + PD     +++ AC   + +++ + V   +
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279

Query: 521 VRFEPEGDGAYILMTN----IYSSKNRWKEALKLRKKMKERKV 559
           V+ +   +   I+++N    +Y+  +R KEA  +   M  R V
Sbjct: 280 VKNDKLRND--IILSNAFVDMYAKCSRIKEARFIFDSMPIRNV 320


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/503 (39%), Positives = 290/503 (57%), Gaps = 41/503 (8%)

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV-- 171
           + +++  P +L     + S+    Q HA+ +K+ L+ + +  + L+   +     +A+  
Sbjct: 1   MSSSFPPPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPY 60

Query: 172 -HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
            H +F    +P +      W T+I+AY     P  A+  F  M  A++ PD       L 
Sbjct: 61  AHSIFSRIPNPNSYM----WNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALK 116

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR----------- 279
           +C     +  G +IH ++      L  D+FI N LI +Y  CG I  AR           
Sbjct: 117 SCGSFSGVEEGRQIHGHVLKT--GLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDV 174

Query: 280 ---------------------KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
                                +VF E PVKNVVSWN+MI G +H G+F E L +F  MQ 
Sbjct: 175 VSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQH 234

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G+KPD+ TLV VL++CA++G L  G+WVH Y+DKN I+ DGF+  ALVDMY+KCG I++
Sbjct: 235 AGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEK 294

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  VF S   +D+ ++ ++I GL+ HG    AL IFSEM   G +P+EVTFV VLSACS 
Sbjct: 295 ALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSR 354

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           AGL++EG + F  M  V+ +QP  EHYGCMVDL GR GL+ EA +L++ MP    + VW 
Sbjct: 355 AGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWE 414

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           +LLGAC+ H  VELAE V + L+   P+   +++ ++N+Y+S  RWK+ +++R+KM+ + 
Sbjct: 415 SLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQG 474

Query: 559 VKKTPGCSLVEVYGEFYEFRKGD 581
           V+K PGCS++EV G  YEF  G+
Sbjct: 475 VRKDPGCSMIEVDGTVYEFLAGE 497



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/406 (31%), Positives = 207/406 (50%), Gaps = 57/406 (14%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQV 83
           E + S+ +L Q HA I+K+G   H T      I S+S  +  + +         + NP  
Sbjct: 15  EMATSISELHQAHAHILKSGLI-HSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNS 73

Query: 84  YLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           Y++N II+  +N+  P  A+ ++ +ML   +LP+ YT  + LK+C     +  G+Q+H +
Sbjct: 74  YMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGH 133

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM-- 200
            +KT L  ++++ NTL+ LYA CG I+    L         +RD+VSW  L+ AY +   
Sbjct: 134 VLKTGLGDDLFIQNTLIHLYASCGCIEDARHLL----DRMLERDVVSWNALLSAYAERGL 189

Query: 201 ----------DYPTEAILS--------------------FFDMCQANLRPDGMILVIVLS 230
                     + P + ++S                    F DM  A ++PD   LV VLS
Sbjct: 190 MELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLS 249

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           AC+ +G LS G  +H YI  N   +S D F+  AL+DMY KCG+I  A +VF+    K++
Sbjct: 250 ACAHVGALSQGEWVHAYIDKN--GISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDI 307

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK----- 345
            +WNS+I+GL+  G  + AL IF  M   G KP++ T VCVL++C+  G L+ G+     
Sbjct: 308 STWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNL 367

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
            VH +  +  I   G     +VD+  + G +++A  + + M  ++ 
Sbjct: 368 MVHVHGIQPTIEHYG----CMVDLLGRVGLLEEAEELVQKMPQKEA 409



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 127/266 (47%), Gaps = 13/266 (4%)

Query: 83  VYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           V  +N +I   S+A    E + L+ +M   G+ P+  TL  VL AC    +L  G+ VHA
Sbjct: 206 VVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHA 265

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           Y  K  +  + +V   L+ +Y+ CG I+   ++F    +   ++D+ +W ++I       
Sbjct: 266 YIDKNGISIDGFVATALVDMYSKCGSIEKALEVF----NSCLRKDISTWNSIISGLSTHG 321

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
               A+  F +M     +P+ +  V VLSACS+ G L  G ++   +   H  + P +  
Sbjct: 322 SGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVH-GIQPTIEH 380

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNV-VSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           +  ++D+  + G +  A ++  +MP K   V W S++    + G  + A  + +++  L 
Sbjct: 381 YGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKL--LE 438

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKW 346
           L P + +    L++     +  +G+W
Sbjct: 439 LSPQESSSFVQLSNM----YASMGRW 460


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/585 (36%), Positives = 334/585 (57%), Gaps = 26/585 (4%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS-----LQNPQVYL 85
           L S K+V  L++  A II  G  Q+   +  + + S     ++ +         +P+V L
Sbjct: 32  LRSCKTVALLQKVQAQIITHGF-QYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVEL 90

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N I +    NA   E + L+ +M    + PN +T P VLK+C +  +   G+++H   +
Sbjct: 91  WNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVI 150

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K  L  N +V  TL+ +Y+    I + +KLF        +R++V+WT++I  Y+  +   
Sbjct: 151 KGGLEGNQFVATTLIDVYSGGRAIGSAYKLFV----GMLERNIVAWTSMISGYILCNRVA 206

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP--DVFIH 262
            A    FD+       D ++  I++S   ++GD+    K+        F+  P  D    
Sbjct: 207 LA-RRLFDLAPER---DVVLWNIMVSGYIEIGDMKAARKL--------FDTMPYRDTMSW 254

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           N +++ Y   G++ +  ++F+EMP +NV SWN +I G  H G F E L  F+RM   GL 
Sbjct: 255 NTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLV 314

Query: 323 -PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
            P+D TLV VL++CA +G L+LGKWVH Y          ++GNAL+DMY+KCG I+ A  
Sbjct: 315 VPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAME 374

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF SM  +D+ ++ +MI GLA HG    AL +F +M   G +PD +TF+GVL +C+H GL
Sbjct: 375 VFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGL 434

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           VEEG  +F  M   Y++ PQ EHYGCMVDLFGRAGL+  A++ +K MP+  DA +W ALL
Sbjct: 435 VEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALL 494

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
           GAC+I+  ++LAE+ ++ L+  EP+    Y+L++NIY    RWK+  +L+  M++   KK
Sbjct: 495 GACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKK 554

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            PGCSL+EV     EF   D+ H ++ EIY +L  +M   ++ GY
Sbjct: 555 LPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSFGY 599


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/615 (35%), Positives = 326/615 (53%), Gaps = 44/615 (7%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS----- 77
           S  H    L    SV +L Q HA ++  G     +QIL     +L  G  +         
Sbjct: 11  SARHVRELLRRCGSVHRLNQLHAHLVVHGVDDVTSQILA-SYCALPAGGGVWYARQLFDR 69

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + +P  ++YN +I+   N++ P EA+ L R M+ +G+LPN +TLP++LKAC + Q+    
Sbjct: 70  IPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHV 129

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
              H   +K   +  V+V N L+  YA  G +    + F         R++VSW ++I  
Sbjct: 130 MVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFD----EMVDRNVVSWNSMING 185

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y +     EA   F  M +  L  D   LV +L ACS  G+L  G  +H ++      + 
Sbjct: 186 YAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRI- 244

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR------------- 303
            D+ + NAL+DMY KCG++  A   FD MP KN VSW SM+  L  R             
Sbjct: 245 -DLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQI 303

Query: 304 ------------------GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
                             G+F EALD++ RM+ LGL PD+FTL  VL++C  +G L  GK
Sbjct: 304 PEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGK 363

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            +H  +  N  N    + N+L+DMYA+CG++D A  +F  M  ++V S+ A+I  LA+HG
Sbjct: 364 MIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHG 423

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
           +A  AL  F  M      PDE+TFV +LSAC+H GL+E G  +F  M  VYN++P  EHY
Sbjct: 424 RAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHY 483

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
            CMVDL GR G + +A+DLIK MP+ PD  VWGALLGAC+IH  +++ + V++ L+  E 
Sbjct: 484 ACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEG 543

Query: 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585
              G ++L++N+    ++W++  +LRK M+E  +KK  G S +E     +E       H 
Sbjct: 544 MSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGAEGIGHE 603

Query: 586 KTLEIYKLLDEIMHQ 600
            + ++Y   D + H 
Sbjct: 604 SSDDMYVGDDRLPHH 618


>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
          Length = 642

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/447 (41%), Positives = 286/447 (63%), Gaps = 5/447 (1%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           + Y+L   + A  +  SL VG Q HA S+K +L S+ +V N L+ +Y+ C    +   + 
Sbjct: 4   DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
                P+   D+VSW T+I  Y++   P +A+ SF  M +  +R D + L+ VL AC++ 
Sbjct: 64  D--SAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACART 121

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
           G + +G   H  +  N F +  + +I ++L+ MY KCG +  AR+VF+ MP +NVV W S
Sbjct: 122 GAMKVGSLCHALVVLNGFEI--NCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTS 179

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           MIAG T  G+FKEA+D+FR MQ  G+K DD T+  V++SC  +G L+LG+++H Y D + 
Sbjct: 180 MIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHG 239

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           +  +  + N+L+DMY+KCG +++A+ +FR +  RDV+++T MI+G A++G   +ALD+F+
Sbjct: 240 LGKELSVKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFA 299

Query: 416 EM-SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           +M  +  + P+EV F+GVL+ACSH GLVE+G  HF  MS+VYNL P+ EHYGCMVDL GR
Sbjct: 300 QMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGR 359

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           A L+ EA   IK MP+ PD  VW +LL AC+   +V LAE   E + + EP+  G ++L+
Sbjct: 360 AKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLL 419

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKK 561
           +N+Y++ +RW +   +R  M   +  +
Sbjct: 420 SNVYATTSRWVDVNNVRTGMGNSRTSQ 446



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 140/248 (56%), Gaps = 7/248 (2%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P +A+  + +M  + +  +  TL  VL AC ++ +++VG   HA  +      N Y+ ++
Sbjct: 89  PNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSS 148

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +YA CG+++   ++F+  + P  +R++V WT++I    +     EA+  F DM  A 
Sbjct: 149 LVSMYAKCGMVEEARRVFN--RMP--ERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAG 204

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++ D   +  V+S+C ++G L LG  +H Y  D H  L  ++ + N+LIDMY KCG++  
Sbjct: 205 VKADDATIATVVSSCGQMGALDLGRYLHAY-CDGH-GLGKELSVKNSLIDMYSKCGDVNK 262

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCA 336
           A ++F  +  ++V +W  MI G    G   EALD+F +M+G   + P++   + VL +C+
Sbjct: 263 AYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACS 322

Query: 337 NIGWLELG 344
           + G +E G
Sbjct: 323 HGGLVEQG 330



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 123/265 (46%), Gaps = 7/265 (2%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K   +     + N   +   V   + I  C  +    EA+ L+R+M I G+  +  T
Sbjct: 152 MYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDAT 211

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           +  V+ +C Q  +L +G+ +HAY     L   + V N+L+ +Y+ CG +   +++F    
Sbjct: 212 IATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIF---- 267

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDL 238
               +RD+ +WT +I  +       EA+  F  M  +  + P+ +I + VL+ACS  G +
Sbjct: 268 RGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLV 327

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMI 297
             G   H +     +NL P +  +  ++D+  +   +  A +   +MPV  +VV W S++
Sbjct: 328 EQGYH-HFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLL 386

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLK 322
                 GQ   A     R++ L  K
Sbjct: 387 FACRASGQVGLAEYAAERIEQLEPK 411


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/499 (39%), Positives = 303/499 (60%), Gaps = 6/499 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV-GQQVHAYSMKTALLSNVYVFNTL 158
           E+I+LYR ML  G  P+ ++ P++LK+C  S SL V GQQ+H + ++    +  +V   L
Sbjct: 33  ESISLYRSMLRSGSSPDAFSFPFILKSC-ASLSLPVSGQQLHCHVIRGGCEAEPFVLTAL 91

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y  CGL++   K+F   ++P + +  V +  LI  Y      ++A   F  M +  +
Sbjct: 92  ISMYCKCGLVEDARKVFE--ENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGV 149

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
             D + ++ ++  C+    L LG  +H            +V + N+ I MY+KCG++ S 
Sbjct: 150 SVDSVTILGLVPLCTVPEYLWLGRSLHGECVKG--GTYSEVAVLNSFITMYMKCGSVESG 207

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           R++FDEMPVK +++WN++I+G +  G   + L++F +M+  G+ PD FTLV VL+SCA++
Sbjct: 208 RRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHL 267

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G  ++G+ V   ++ N    + F+ NAL+ MYA+CG + +A  VF  M  + + S+TAMI
Sbjct: 268 GAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMI 327

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
               +HG     L +F +M + GI PD   FV VLSACSH+GL ++G + F  M R Y L
Sbjct: 328 GCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKL 387

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +P  EHY C+VDL GRAG + EA++ I SMP+ PD  VWGALLGACKIH  V++AE+   
Sbjct: 388 EPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFA 447

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            ++ FEP   G Y+LM+NIYS     +   ++R  M+ER  +K PG S VE  G+ + F 
Sbjct: 448 KVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFL 507

Query: 579 KGDKSHPKTLEIYKLLDEI 597
            GD+SH +T E++++LDE+
Sbjct: 508 AGDRSHEQTEEVHRMLDEL 526



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 185/380 (48%), Gaps = 8/380 (2%)

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
            SW   ++        TE+I  +  M ++   PD      +L +C+ L     G ++H +
Sbjct: 16  TSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCH 75

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV--VSWNSMIAGLTHRGQ 305
           +        P  F+  ALI MY KCG +  ARKVF+E P  +   V +N++I+G T   +
Sbjct: 76  VIRGGCEAEP--FVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSK 133

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
             +A  +FRRM+  G+  D  T++ ++  C    +L LG+ +H    K    ++  + N+
Sbjct: 134 VSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNS 193

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
            + MY KCG ++    +F  M  + + ++ A+I G + +G A+  L++F +M   G+ PD
Sbjct: 194 FITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPD 253

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
             T V VLS+C+H G  + G +   ++       P       ++ ++ R G + +A  + 
Sbjct: 254 PFTLVSVLSSCAHLGAKKIG-QEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVF 312

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA-YILMTNIYSSKNRW 544
             MP V     W A++G   +H   E    + +++++     DGA ++++ +  S     
Sbjct: 313 DIMP-VKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLT 371

Query: 545 KEALKLRKKMKERKVKKTPG 564
            + L+L + MK R+ K  PG
Sbjct: 372 DKGLELFRAMK-REYKLEPG 390



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 163/322 (50%), Gaps = 9/322 (2%)

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           YN +I    +N+   +A  ++R M   G+  ++ T+  ++  C   + L +G+ +H   +
Sbjct: 121 YNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECV 180

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K    S V V N+ + +Y  CG +++  +LF         + L++W  +I  Y +     
Sbjct: 181 KGGTYSEVAVLNSFITMYMKCGSVESGRRLF----DEMPVKGLITWNAVISGYSQNGLAY 236

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           + +  F  M  + + PD   LV VLS+C+ LG   +G ++   +  N F  +P+VF+ NA
Sbjct: 237 DVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGF--APNVFLSNA 294

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LI MY +CGN+  AR VFD MPVK++VSW +MI      G  +  L +F  M   G++PD
Sbjct: 295 LISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPD 354

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVF 383
               V VL++C++ G  + G  +   + + +    G    + LVD+  + GR+D+A    
Sbjct: 355 GAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFI 414

Query: 384 RSMKCR-DVYSYTAMIVGLAIH 404
            SM    D   + A++    IH
Sbjct: 415 DSMPVEPDGAVWGALLGACKIH 436


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 301/499 (60%), Gaps = 6/499 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV-GQQVHAYSMKTALLSNVYVFNTL 158
           E+I+LYR ML  G  P+ ++ P++LK+C  S SL V GQQ+H +  K    +  +V   L
Sbjct: 36  ESISLYRSMLRSGSSPDAFSFPFILKSC-ASLSLPVSGQQLHCHVTKGGCETEPFVLTAL 94

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y  CGL+    K+F   ++PQ+ +  V +  LI  Y      T+A   F  M +  +
Sbjct: 95  ISMYCKCGLVADARKVFE--ENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGV 152

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
             D + ++ ++  C+    L LG  +H         L  +V + N+ I MY+KCG++ + 
Sbjct: 153 SVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG--GLDSEVAVLNSFITMYMKCGSVEAG 210

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           R++FDEMPVK +++WN++I+G +  G   + L+++ +M+  G+ PD FTLV VL+SCA++
Sbjct: 211 RRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHL 270

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G  ++G  V   ++ N    + F+ NA + MYA+CG + +A  VF  M  + + S+TAMI
Sbjct: 271 GAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMI 330

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
               +HG     L +F +M + GI PD   FV VLSACSH+GL ++G + F  M R Y L
Sbjct: 331 GCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKL 390

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +P  EHY C+VDL GRAG + EA++ I+SMP+ PD  VWGALLGACKIH  V++AE+   
Sbjct: 391 EPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFA 450

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            ++ FEP   G Y+LM+NIYS     +   ++R  M+ER  +K PG S VE  G  + F 
Sbjct: 451 KVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFL 510

Query: 579 KGDKSHPKTLEIYKLLDEI 597
            GD+SH +T E++++LDE+
Sbjct: 511 AGDRSHEQTEEVHRMLDEL 529



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 187/378 (49%), Gaps = 8/378 (2%)

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W   ++        +E+I  +  M ++   PD      +L +C+ L     G ++H ++T
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS--WNSMIAGLTHRGQFK 307
                  P  F+  ALI MY KCG +  ARKVF+E P  + +S  +N++I+G T   +  
Sbjct: 81  KGGCETEP--FVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVT 138

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           +A  +FRRM+  G+  D  T++ ++  C    +L LG+ +H    K  ++++  + N+ +
Sbjct: 139 DAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
            MY KCG ++    +F  M  + + ++ A+I G + +G A+  L+++ +M   G+ PD  
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           T V VLS+C+H G  + G      +       P        + ++ R G + +A  +   
Sbjct: 259 TLVSVLSSCAHLGAKKIG-HEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDI 317

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA-YILMTNIYSSKNRWKE 546
           MP V     W A++G   +H   E+  ++ +++++     DGA ++++ +  S      +
Sbjct: 318 MP-VKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDK 376

Query: 547 ALKLRKKMKERKVKKTPG 564
            L+L + MK R+ K  PG
Sbjct: 377 GLELFRAMK-REYKLEPG 393



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 181/363 (49%), Gaps = 15/363 (4%)

Query: 79  QNPQV----YLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133
           +NPQ       YN +I    +N+   +A  ++R M   G+  ++ T+  ++  C   + L
Sbjct: 113 ENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYL 172

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
            +G+ +H   +K  L S V V N+ + +Y  CG ++A  +LF         + L++W  +
Sbjct: 173 WLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLF----DEMPVKGLITWNAV 228

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I  Y +     + +  +  M  + + PD   LV VLS+C+ LG   +G ++ + +  N F
Sbjct: 229 ISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGF 288

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
              P+VF+ NA I MY +CGN+  AR VFD MPVK++VSW +MI      G  +  L +F
Sbjct: 289 --VPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLF 346

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAK 372
             M   G++PD    V VL++C++ G  + G  +   + + +    G    + LVD+  +
Sbjct: 347 DDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGR 406

Query: 373 CGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
            GR+D+A     SM    D   + A++    IH     A   F+++  +  EP+ + +  
Sbjct: 407 AGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKV--IEFEPNNIGYYV 464

Query: 432 VLS 434
           ++S
Sbjct: 465 LMS 467


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 331/581 (56%), Gaps = 17/581 (2%)

Query: 22  LSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQIL--YDKIISLSRGNEI-EN 75
           LSL H++  L S  + G+L   H + +KTG   S    + +L  Y K   +  G  +   
Sbjct: 119 LSLAHKACGLNSDVNYGEL--LHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHE 176

Query: 76  LSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
           + ++N  V  +  II  L  A    EA+  + EM    +  ++YT    LKAC  S +L 
Sbjct: 177 MPMRN--VVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALN 234

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
            G+++HA +MK     + +V NTL  +Y  CG ++    LF       + RD+VSWTT+I
Sbjct: 235 YGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFE----KMSMRDVVSWTTII 290

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
              V+M     A+ +F  M ++++ P+      V+S C+ L  +  G ++H  I   H  
Sbjct: 291 TTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALIL--HLG 348

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           L+  + + N+++ MY KCG + S+  +F EM  +++VSW+++IAG    G   EA ++  
Sbjct: 349 LAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLS 408

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            M+  G KP +F L  VL++C N+  LE GK +H Y+    +     + +AL++MY KCG
Sbjct: 409 WMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCG 468

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            I++A  +F + +  D+ S+TAMI G A HG + + +D+F ++ +VG+ PD VTF+GVLS
Sbjct: 469 SIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLS 528

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           ACSHAGLV+ G  +F  MS+ Y + P  EHYGCM+DL  RAG + +A  +I++MP   D 
Sbjct: 529 ACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDD 588

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            VW  LL AC++H  VE      E +++ EP   G +I + NIY+SK +W+EA  +RK M
Sbjct: 589 VVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLM 648

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           K + V K PG S ++V    + F  GD+SHP+  +IY +LD
Sbjct: 649 KSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLD 689



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 149/537 (27%), Positives = 262/537 (48%), Gaps = 64/537 (11%)

Query: 12  RYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGN 71
           R ND N  Q +  + Q+   ES+K   QLK+    ++KTG   +  + ++DK   +S+ +
Sbjct: 32  RSND-NLSQNIHFISQTDLPESNK---QLKE----LVKTGHLGNARR-MFDK---MSQKD 79

Query: 72  EIENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIK-GLLPNTYTLPYVLKACWQ 129
           EI            +  +I    NAN   EA+ L++ M ++ GL  + + L    KAC  
Sbjct: 80  EIS-----------WTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGL 128

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
           +  +  G+ +H Y++KT L+++V+V + L+ +Y   G I    ++F    H    R++VS
Sbjct: 129 NSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVF----HEMPMRNVVS 184

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           WT +I   V+  Y  EA++ F +M ++ +  D     I L AC+  G L+ G +IH    
Sbjct: 185 WTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAM 244

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
              F++S   F+ N L  MY KCG +     +F++M +++VVSW ++I  L   GQ + A
Sbjct: 245 KKGFDVSS--FVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECA 302

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           +  F RM+   + P+++T   V++ CAN+  +E G+ +H  +    +     + N+++ M
Sbjct: 303 VQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTM 362

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           YAKCG++  +  +F  M  RD+ S++ +I G    G   +A ++ S M   G +P E   
Sbjct: 363 YAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFAL 422

Query: 430 VGVLSACSHAGLVEEG----------------------------CKHFLDMSRVYNLQPQ 461
             VLSAC +  ++E G                            C    + SR+++    
Sbjct: 423 ASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEN 482

Query: 462 TE--HYGCMVDLFGRAGLIREALDLIKSMPLV---PDAFVWGALLGACKIHAKVELA 513
            +   +  M++ +   G  RE +DL + +P V   PD+  +  +L AC     V+L 
Sbjct: 483 DDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLG 539


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/576 (35%), Positives = 328/576 (56%), Gaps = 14/576 (2%)

Query: 37  VGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQ 91
           V + K+ H +++K G   + T ++   I +  +   +E+       L  P V  +N +I 
Sbjct: 211 VKECKRVHGYVLKLGFGSN-TAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 269

Query: 92  -CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
            C+ N      + ++ +MLI G+  +  TL  VL AC    +L +G+ +H + +K     
Sbjct: 270 GCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSE 329

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
            V   NTL+ +Y+ CG +    ++F           +VSWT++I AYV+    ++AI  F
Sbjct: 330 EVVFSNTLLDMYSKCGNLNGATEVFV----KMGDTTIVSWTSIIAAYVREGLYSDAIGLF 385

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
            +M    +RPD   +  ++ AC+    L  G  +H Y+  N   +  ++ + NALI+MY 
Sbjct: 386 DEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN--GMGSNLPVTNALINMYA 443

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG++  AR VF ++PVK++VSWN+MI G +      EAL++F  MQ    KPDD T+ C
Sbjct: 444 KCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQK-QFKPDDITMAC 502

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           VL +CA +  L+ G+ +H ++ +    +D  +  ALVDMYAKCG +  A  +F  +  +D
Sbjct: 503 VLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKD 562

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           + S+T MI G  +HG   +A+  F+EM   GIEPDE +F  +L+ACSH+GL+ EG K F 
Sbjct: 563 LISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFN 622

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M     ++P+ EHY C+VDL  R G + +A   I+SMP+ PD  +WG LL  C+IH  V
Sbjct: 623 SMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDV 682

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           +LAE V E++   EP+    Y+++ N+Y+   +W+E  KLRK+M++R  K+ PGCS +EV
Sbjct: 683 KLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEV 742

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            G+F  F  G+  HP+  +I  LL ++  Q +N  Y
Sbjct: 743 GGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDY 778



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 147/484 (30%), Positives = 251/484 (51%), Gaps = 24/484 (4%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQT-----QILYDKIISLSRGNEIENLSLQNPQVYLYNFI 89
           KS+   K+ H+ II  G    +        +Y     L +G +I +  + N +V+L+N +
Sbjct: 108 KSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFD-KIMNDKVFLWNLL 166

Query: 90  IQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           +   +   N  E+++L+++M   G++ N YT   VLK       ++  ++VH Y +K   
Sbjct: 167 MSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGF 226

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            SN  V N+L+  Y   G +++ H LF     P    D+VSW ++I   V   +    + 
Sbjct: 227 GSNTAVVNSLIAAYFKFGGVESAHNLFDELSEP----DVVSWNSMINGCVVNGFSGNGLE 282

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F  M    +  D   LV VL AC+ +G+LSLG  +H +     F  S +V   N L+DM
Sbjct: 283 IFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACF--SEEVVFSNTLLDM 340

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KCGN+  A +VF +M    +VSW S+IA     G + +A+ +F  MQ  G++PD +T+
Sbjct: 341 YSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTV 400

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             ++++CA    L+ G+ VH+Y+ KN + ++  + NAL++MYAKCG +++A  VF  +  
Sbjct: 401 TSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV 460

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK- 447
           +D+ S+  MI G + +    +AL++F +M Q   +PD++T   VL AC+    +++G + 
Sbjct: 461 KDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREI 519

Query: 448 --HFLDMSRVYNLQPQTEHYGC-MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
             H L      +L     H  C +VD++ + GL+  A  L   +P   D   W  ++   
Sbjct: 520 HGHILRRGYFSDL-----HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGY 573

Query: 505 KIHA 508
            +H 
Sbjct: 574 GMHG 577



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 188/383 (49%), Gaps = 12/383 (3%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           VL+ C + +SL  G++VH+  +   +  +  +   L+ +Y  CG +    K+F    + +
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 159

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
               +  W  L+  Y K+    E++  F  M +  +  +      VL   + LG +    
Sbjct: 160 ----VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 215

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           ++H Y+    F  +  V   N+LI  Y K G + SA  +FDE+   +VVSWNSMI G   
Sbjct: 216 RVHGYVLKLGFGSNTAVV--NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 273

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
            G     L+IF +M  LG++ D  TLV VL +CANIG L LG+ +H +  K   + +   
Sbjct: 274 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVF 333

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
            N L+DMY+KCG ++ A  VF  M    + S+T++I      G    A+ +F EM   G+
Sbjct: 334 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGV 393

Query: 423 EPDEVTFVGVLSACSHAGLVEEG--CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
            PD  T   ++ AC+ +  +++G     ++  + + +  P T     +++++ + G + E
Sbjct: 394 RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTN---ALINMYAKCGSVEE 450

Query: 481 ALDLIKSMPLVPDAFVWGALLGA 503
           A  +   +P V D   W  ++G 
Sbjct: 451 ARLVFSKIP-VKDIVSWNTMIGG 472



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 166/342 (48%), Gaps = 38/342 (11%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL  C++   L  G ++H  I  N   +S D  +   L+ MY+ CG++   RK+FD++  
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISN--GISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMN 157

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
             V  WN +++     G F+E++ +F++MQ LG+  + +T  CVL   A +G ++  K V
Sbjct: 158 DKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 217

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H Y+ K    ++  + N+L+  Y K G ++ A  +F  +   DV S+ +MI G  ++G +
Sbjct: 218 HGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 277

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------------------CKHF 449
              L+IF +M  +G+E D  T V VL AC++ G +  G                      
Sbjct: 278 GNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTL 337

Query: 450 LDM-SRVYNLQPQTEHYGCMVDL-----------FGRAGLIREAL---DLIKSMPLVPDA 494
           LDM S+  NL   TE +  M D            + R GL  +A+   D ++S  + PD 
Sbjct: 338 LDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDI 397

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536
           +   +++ AC   + ++    V   +++    G G+ + +TN
Sbjct: 398 YTVTSIVHACACSSSLDKGRDVHSYVIK---NGMGSNLPVTN 436


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/597 (36%), Positives = 334/597 (55%), Gaps = 17/597 (2%)

Query: 18  TFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI------LYDKIISLSRGN 71
           T  Q   L QS    ++KS  Q +Q HA +I     ++ T +       Y     +S+  
Sbjct: 58  TSLQCGALLQS--FTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAE 115

Query: 72  EI-ENLSLQNPQVYLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ 129
            I + + L+N   +L+NF+I+   SN  P++++ LYREML  G   + +T P+VLKAC  
Sbjct: 116 VIFDGIVLKNS--FLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGD 173

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
              + +G++VH+  +   L S++YV N+L+ +YA  G +     +F       A+RDL S
Sbjct: 174 LLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFD----RMAERDLTS 229

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W T+I  Y K      A L F  M +A L  D   L+ +LSAC+ L  +  G  IH Y  
Sbjct: 230 WNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAV 289

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
            N    + + F  N+LI+MY  C  +  AR++F+ +  K+ VSWNSMI G    G   E+
Sbjct: 290 RNSIG-NYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFES 348

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           L +FRRM   G  PD  T + VL +C  I  L  G  +H+YL K   + +  +G ALVDM
Sbjct: 349 LRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDM 408

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           Y+KCG +  +  VF  M  + + S++AM+ G  +HG+  +A+ I   M    + PD   F
Sbjct: 409 YSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVF 468

Query: 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
             +LSACSHAGLV EG + F  M + YN++P   HY CMVDL GRAG + EA  +I++M 
Sbjct: 469 TSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTME 528

Query: 490 LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549
           + P + +W ALL A ++H  ++LAEI  + +    P+   +YI ++NIY+++ RW +  +
Sbjct: 529 IKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVER 588

Query: 550 LRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           +R  ++ + +KK+PGCS +E+    + F  GDKSH +T +IY  L+E+  Q K  GY
Sbjct: 589 VRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGY 645


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/524 (38%), Positives = 298/524 (56%), Gaps = 38/524 (7%)

Query: 109 LIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI 168
           L++   P+  T P++LKAC + Q    G  V    +     ++V+V N  M   AVC  +
Sbjct: 112 LLRSARPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSM 171

Query: 169 KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVI 227
               KLF         RDLVSW TLI  YV+   P EA+  F+ M     + PD + ++ 
Sbjct: 172 AEARKLFDGSH----VRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIG 227

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP----------- 276
           V+S  ++L DL LG ++H Y+  +    +  V + N ++DMY+KCG++            
Sbjct: 228 VVSGSAQLRDLELGRRLHGYVESHGVRCT--VRLMNVVMDMYIKCGDLERAKSVFEGIDK 285

Query: 277 --------------------SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
                                ARKVFDEMP ++V  WN+++ G     + KEAL +F  M
Sbjct: 286 KTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDM 345

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           Q   ++PDD T+V +L++C+ +G LE+G WVH Y+D+  ++    +G  LVDMY+KCG I
Sbjct: 346 QEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNI 405

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           ++A  VF+ +  ++  ++TAMI GLA HG A  A+  F  M ++G++PDE+TF+GVLSAC
Sbjct: 406 EKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSAC 465

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
            HAGLV+EG + F  M   Y+L+ + +HY CMVDL GRAG + EA  L+ +MP+ PDA V
Sbjct: 466 CHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVV 525

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           WGAL  AC++H  + L E     LV  +P   G Y+L+ N+Y+  N  K+A K+R  M+ 
Sbjct: 526 WGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRH 585

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
             V+K PGCS +E+ G  +EF   DKSH     IY  L EI  Q
Sbjct: 586 LGVEKVPGCSCIELNGVVHEFIVKDKSHTDIAAIYDCLHEITLQ 629



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 101/198 (51%), Gaps = 6/198 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+ +M    + P+  T+  +L AC Q  +L +G  VH Y  +  +  +V +   L+
Sbjct: 337 EALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLV 396

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ CG I+   ++  F++ P  +++ ++WT +I       +   AI  F  M +  L+
Sbjct: 397 DMYSKCGNIEKAIRV--FKEIP--EKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQ 452

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  + VLSAC   G +  G +    +  + ++L   +  ++ ++D+  + G +  A 
Sbjct: 453 PDEITFIGVLSACCHAGLVKEGQEFFSLMV-SKYHLERKMKHYSCMVDLLGRAGYLDEAE 511

Query: 280 KVFDEMPVK-NVVSWNSM 296
            + + MP++ + V W ++
Sbjct: 512 HLVNTMPMEPDAVVWGAL 529


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/549 (37%), Positives = 312/549 (56%), Gaps = 8/549 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTY 118
           +Y K  +LS   ++ N SL N  +  YN II   + ++  +EA+ ++R +   GL  +  
Sbjct: 319 MYMKCNNLSDAQKLFN-SLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEV 377

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           +L    +AC   +    G QVH  SMK+   SN+ V N ++ +Y  CG +     +F   
Sbjct: 378 SLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFE-- 435

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                 RD VSW  +I A+ +     + +  F  M Q+ + PD      VL AC+    L
Sbjct: 436 --EMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQAL 493

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
           + G++IH  I  +   L  D F+  ALIDMY KCG +  A K+ D +  + VVSWN++I+
Sbjct: 494 NCGMEIHNRIIKSRLGL--DSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIIS 551

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G + + Q +EA   F +M  +G+ PD+FT   +L++CAN+  +ELGK +H  + K  + +
Sbjct: 552 GFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQS 611

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           D +I + LVDMY+KCG +     +F     RD  ++ AM+ G A HG   +AL IF  M 
Sbjct: 612 DAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQ 671

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
              ++P+  TF+ VL AC H GLVE+G  +F  M   Y L PQ EHY C+VD+ GR+G +
Sbjct: 672 LENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQV 731

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            +AL+LI+ MP   DA +W  LL  CKIH  VE+AE    ++++ EPE   AY+L++NIY
Sbjct: 732 SKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIY 791

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           ++   W E  KLRK M+   +KK PGCS +E+  E + F  GDK+HP++ EIY+ LD + 
Sbjct: 792 ANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLT 851

Query: 599 HQSKNHGYI 607
            + K  GY+
Sbjct: 852 DEMKWVGYM 860



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 223/433 (51%), Gaps = 14/433 (3%)

Query: 89  IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I  C+ N +    + L++EM   G+  +  T   V ++C    +LR+G Q+H +++KT  
Sbjct: 247 IAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDF 306

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            ++V +    + +Y  C  +    KLF    +     +L S+  +I  Y + D   EA+ 
Sbjct: 307 GTDVVIGTATLDMYMKCNNLSDAQKLF----NSLPNHNLQSYNAIIVGYARSDKGIEALG 362

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKL-GDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
            F  + ++ L  D + L     AC+ + GDL  G+++H     +      ++ + NA++D
Sbjct: 363 MFRLLQKSGLGLDEVSLSGAFRACAVIKGDLE-GLQVHGLSMKSL--CQSNICVANAILD 419

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY KCG +  A  VF+EM  ++ VSWN++IA     G  ++ L +F  M   G++PD+FT
Sbjct: 420 MYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFT 479

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
              VL +CA    L  G  +H  + K+ +  D F+G AL+DMY+KCG +++A  +   + 
Sbjct: 480 YGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLA 539

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            + V S+ A+I G ++  ++ +A   FS+M ++G++PD  T+  +L  C++   VE G +
Sbjct: 540 EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQ 599

Query: 448 HFLDMSRVYNLQPQTEHY--GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505
                +++   + Q++ Y    +VD++ + G +++   + +  P   D   W A++    
Sbjct: 600 IH---AQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP-NRDFVTWNAMVCGYA 655

Query: 506 IHAKVELAEIVME 518
            H   E A  + E
Sbjct: 656 QHGLGEEALKIFE 668



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 203/453 (44%), Gaps = 42/453 (9%)

Query: 81  PQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           P  + +NF  +      P+   + Y+    K       T  ++ + C   ++L  G+Q H
Sbjct: 11  PIRFFFNFQSKSPFKTLPISPFSSYQATPTK-----KKTFSHIFQECSDRKALCPGKQAH 65

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH------------------------ 176
           A  + T     V+V N L+++Y  C  ++   K+F                         
Sbjct: 66  ARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIG 125

Query: 177 -----FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
                F   P+  RD+VSW +LI  Y+      + I  F  M +     D     +VL +
Sbjct: 126 VAQKLFDAMPE--RDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKS 183

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           CS L D   GI+IH       F+   DV   +AL+DMY KC  +  + + F  MP KN V
Sbjct: 184 CSSLEDHGGGIQIHGLAVKMGFDC--DVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWV 241

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           SW+++IAG       +  L++F+ MQ  G+     T   V  SCA +  L LG  +H + 
Sbjct: 242 SWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHA 301

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            K    TD  IG A +DMY KC  +  A  +F S+   ++ SY A+IVG A   K  +AL
Sbjct: 302 LKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEAL 361

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVD 470
            +F  + + G+  DEV+  G   AC+      EG + H L M  +   Q        ++D
Sbjct: 362 GMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSL--CQSNICVANAILD 419

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           ++G+ G + EA  + + M +  DA  W A++ A
Sbjct: 420 MYGKCGALVEACLVFEEM-VSRDAVSWNAIIAA 451



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 222/485 (45%), Gaps = 48/485 (9%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           L N +  + I ++ +M   G + +  T   VLK+C   +    G Q+H  ++K     +V
Sbjct: 150 LHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDV 209

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
              + L+ +YA C  +    + F    H   +++ VSW+ +I   V+ D     +  F +
Sbjct: 210 VTGSALLDMYAKCKKLDCSIQFF----HSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKE 265

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +A +         V  +C+ L  L LG ++H +     F    DV I  A +DMY+KC
Sbjct: 266 MQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFG--TDVVIGTATLDMYMKC 323

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
            N+  A+K+F+ +P  N+ S+N++I G     +  EAL +FR +Q  GL  D+ +L    
Sbjct: 324 NNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAF 383

Query: 333 NSCANI-GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
            +CA I G LE G  VH    K+   ++  + NA++DMY KCG + +A  VF  M  RD 
Sbjct: 384 RACAVIKGDLE-GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDA 442

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            S+ A+I     +G   K L +F  M Q G+EPDE T+  VL AC  AG     C   + 
Sbjct: 443 VSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKAC--AGWQALNCGMEIH 500

Query: 452 MSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDL-------------------------- 484
              + +        G  ++D++ + G++ +A  L                          
Sbjct: 501 NRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSE 560

Query: 485 --------IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT- 535
                   +  M + PD F +  +L  C     VEL + +   +++ E + D AYI  T 
Sbjct: 561 EAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD-AYISSTL 619

Query: 536 -NIYS 539
            ++YS
Sbjct: 620 VDMYS 624



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 41/213 (19%)

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T   +   C++   L  GK  H  +         F+ N L+ MY KC  ++ AF VF  M
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 387 KCRDVYSYTAMIVGLAIHGK-----------------AW--------------KALDIFS 415
             RD  S+ AM+ G A  G                  +W              K +D+F 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 416 EMSQVGIEPDEVTFVGVLSACS----HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
           +M ++G   D  TF  VL +CS    H G ++    H L +   ++    T     ++D+
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQ---IHGLAVKMGFDCDVVTG--SALLDM 218

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           + +   +  ++    SMP   +   W A++  C
Sbjct: 219 YAKCKKLDCSIQFFHSMP-EKNWVSWSAIIAGC 250


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/615 (35%), Positives = 326/615 (53%), Gaps = 44/615 (7%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS----- 77
           S  H    L    SV +L Q HA ++  G     +QIL     +L  G  +         
Sbjct: 11  SARHVRELLRRCGSVHRLNQLHAHLVVHGVDDVTSQILA-SYCALPAGGGVWYARQLFDR 69

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + +P  ++YN +I+   N++ P EA+ L R M+ +G+LPN +TLP++LKAC + Q+    
Sbjct: 70  IPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHV 129

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
              H   +K   +  V+V N L+  YA  G +    + F         R++VSW ++I  
Sbjct: 130 MVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFD----EMVDRNVVSWNSMING 185

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y +     EA   F  M +  L  D   LV +L ACS  G+L  G  +H ++      + 
Sbjct: 186 YAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRI- 244

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR------------- 303
            D+ + NAL+DMY KCG++  A   FD MP KN VSW SM+  L  R             
Sbjct: 245 -DLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQI 303

Query: 304 ------------------GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
                             G+F EALD++ RM+ LGL PD+FTL  VL++C  +G L  GK
Sbjct: 304 PEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGK 363

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            +H  +  N  N    + N+L+DMYA+CG++D A  +F  M  ++V S+ A+I  LA+HG
Sbjct: 364 MIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHG 423

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
           +A  AL  F  M      PDE+TFV +LSAC+H GL+E G  +F  M  VYN++P  EHY
Sbjct: 424 RAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHY 483

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
            CMVDL GR G + +A+DLIK MP+ PD  VWGALLGAC+IH  +++ + V++ L+  E 
Sbjct: 484 ACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEG 543

Query: 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585
              G ++L++N+    ++W++  +LRK M+E  +KK  G S +E     +E       H 
Sbjct: 544 MSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGAEGIGHE 603

Query: 586 KTLEIYKLLDEIMHQ 600
            + ++Y   D + H 
Sbjct: 604 SSDDMYVGDDRLPHH 618


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/536 (37%), Positives = 309/536 (57%), Gaps = 40/536 (7%)

Query: 102 IALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           + LYR +L      P+  T P++LKAC + Q    G  V  +  K    ++V+V N  + 
Sbjct: 105 LPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVH 164

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN--L 218
            ++V G +    +LF         RD+VSW TLI  YV+   P EA+  F+ + +    +
Sbjct: 165 FWSVSGSMVLARRLFD----ESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAV 220

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP-- 276
           RPD + ++  +S C+++GDL LG ++H ++       +  V + NA++DMY+KCG++   
Sbjct: 221 RPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCT--VRLMNAVMDMYVKCGSLELA 278

Query: 277 -----------------------------SARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
                                         AR +FDEMP ++V  WN+++AG     Q K
Sbjct: 279 KSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGK 338

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           EA+ +F  MQ   + P++ T+V +L++C+ +G LE+G WVH Y+D++ +     +G +LV
Sbjct: 339 EAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLV 398

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           DMYAKCG I +A  +F+ +  ++  ++TAMI GLA HG A +A++ F  M  +G++PDE+
Sbjct: 399 DMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEI 458

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           TF+GVLSAC HAGLV+EG + F  M   Y+L+ + +HY CM+DL GRAG + EA  L+ +
Sbjct: 459 TFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNT 518

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
           MP+ PDA VWGAL  AC++H  + L E     LV  +P   G Y+L+ N+Y+  N  K+A
Sbjct: 519 MPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKA 578

Query: 548 LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603
            K+R  M+   V+K PGCS +E+ G  +EF   DKSH  T+ IY  L  I  Q K+
Sbjct: 579 DKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTIAIYDCLHGITLQMKH 634



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N    EAIAL+ EM    + PN  T+  +L AC Q  +L +G  VH Y  +  L  +V
Sbjct: 332 VQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSV 391

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            +  +L+ +YA CG IK    +  F++ P   ++ ++WT +I       +  EAI  F  
Sbjct: 392 ALGTSLVDMYAKCGNIKKA--ICIFKEIP--DKNALTWTAMICGLANHGHADEAIEYFQR 447

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M    L+PD +  + VLSAC   G +  G +    + +  ++L   +  ++ +ID+  + 
Sbjct: 448 MIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEK-YHLERKMKHYSCMIDLLGRA 506

Query: 273 GNIPSARKVFDEMPVK-NVVSWNSM 296
           G++  A ++ + MP+  + V W ++
Sbjct: 507 GHLDEAEQLVNTMPMDPDAVVWGAL 531


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/566 (36%), Positives = 320/566 (56%), Gaps = 16/566 (2%)

Query: 37  VGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQ 91
           VG  K  H  +IK+G       ++   +   ++ N  E+       +    V  +N +I 
Sbjct: 314 VGYGKMVHTHVIKSGFAM-DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVIS 372

Query: 92  CL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
           C   +  P +A+ L+ EM + G  P++ TL  V+ +C +   L  G+++H   +++    
Sbjct: 373 CYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL 432

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR-DLVSWTTLIQAYVKMDYPTEAILS 209
           + +V + L+ +Y  CG ++   ++F      Q QR ++VSW ++I  Y         I  
Sbjct: 433 DGFVSSALVDMYGKCGCLEMAKEVFE-----QIQRKNVVSWNSMIAGYSLKGDSKSCIEL 487

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F  M +  +RP    L  +L ACS+  +L LG  IH YI  N   +  D+F++++LID+Y
Sbjct: 488 FRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNR--VEADIFVNSSLIDLY 545

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            KCGNI SA  VF  MP  NVVSWN MI+G    G + EAL IF  M+  G+KPD  T  
Sbjct: 546 FKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFT 605

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            VL +C+ +  LE GK +H ++ ++ +  +  +  AL+DMYAKCG +D+A  +F  +  R
Sbjct: 606 SVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER 665

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           D  S+T+MI     HG+A++AL +F +M Q   +PD+VTF+ +LSACSHAGLV+EGC +F
Sbjct: 666 DFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYF 725

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP-LVPDAFVWGALLGACKIHA 508
             M   Y  +P  EHY C++DL GR G +REA ++++  P +  D  +   L  AC +H 
Sbjct: 726 NQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHK 785

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
           K++L E +   L+  +P+    YI+++N+Y+S  +W E  K+R K+KE  +KK PGCS +
Sbjct: 786 KLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWI 845

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLL 594
           EV    + F   DKSHP+   IY+ +
Sbjct: 846 EVGKRIHPFVVEDKSHPQADMIYECM 871



 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/460 (32%), Positives = 255/460 (55%), Gaps = 11/460 (2%)

Query: 77  SLQNP-QVYLYN-FIIQCLSNANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSL 133
           +++NP  + L+N  +  C  N   +E + ++  +L    L P+ +T P VLKAC     +
Sbjct: 255 TIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRV 314

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
             G+ VH + +K+    +V V ++ + +YA C + +   KLF        +RD+ SW  +
Sbjct: 315 GYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLF----DEMPERDVASWNNV 370

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I  Y +   P +A+  F +M  +  +PD + L  V+S+C++L DL  G +IH  +  + F
Sbjct: 371 ISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGF 430

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            L  D F+ +AL+DMY KCG +  A++VF+++  KNVVSWNSMIAG + +G  K  +++F
Sbjct: 431 AL--DGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELF 488

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
           RRM   G++P   TL  +L +C+    L+LGK++H Y+ +N +  D F+ ++L+D+Y KC
Sbjct: 489 RRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKC 548

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G I  A  VF++M   +V S+  MI G    G   +AL IF++M + G++PD +TF  VL
Sbjct: 549 GNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVL 608

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
            ACS   ++E+G K   +      L+      G ++D++ + G + EAL +   +P   D
Sbjct: 609 PACSQLAVLEKG-KEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERD 666

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
              W +++ A   H +   A  + E + + + + D    L
Sbjct: 667 FVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFL 706



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 140/492 (28%), Positives = 230/492 (46%), Gaps = 71/492 (14%)

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
           +G+ +H   +   L +N+ +  +L+ LY  C L ++   +F   ++P    D+  W  L+
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENP---LDITLWNGLM 269

Query: 195 QAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
            A  K     E +  F  +     L+PD      VL ACS LG +  G  +H ++  + F
Sbjct: 270 AACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGF 329

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            +  DV + ++ + MY KC     A K+FDEMP ++V SWN++I+     GQ ++AL++F
Sbjct: 330 AM--DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELF 387

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             M+  G KPD  TL  V++SCA +  LE GK +H  L ++    DGF+ +ALVDMY KC
Sbjct: 388 EEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKC 447

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G ++ A  VF  ++ ++V S+ +MI G ++ G +   +++F  M + GI P   T   +L
Sbjct: 448 GCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSIL 507

Query: 434 SACSHAGLVEEG----------------------------CKHFLDMSRVYNLQPQTE-- 463
            ACS +  ++ G                            C +      V+   P+T   
Sbjct: 508 MACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVV 567

Query: 464 HYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACK--------------- 505
            +  M+  + + G   EAL +   M    + PDA  + ++L AC                
Sbjct: 568 SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFI 627

Query: 506 IHAKVELAEIVMENLVRFE----------------PEGD-GAYILMTNIYSSKNRWKEAL 548
           I +K+E+ E+VM  L+                   PE D  ++  M   Y S  +  EAL
Sbjct: 628 IESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEAL 687

Query: 549 KLRKKMKERKVK 560
           KL +KM++   K
Sbjct: 688 KLFEKMQQSDAK 699



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 139/264 (52%), Gaps = 10/264 (3%)

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD--EMP 286
           ++A S L +L LG  IH+ I      L  ++ +  +LI++Y  C    SA+ VF   E P
Sbjct: 203 VTAGSALEEL-LGKLIHQKIVS--LGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENP 259

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGK 345
           + ++  WN ++A  T    F E L++F R+     LKPD FT   VL +C+ +G +  GK
Sbjct: 260 L-DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGK 318

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            VHT++ K+    D  + ++ V MYAKC   + A  +F  M  RDV S+  +I      G
Sbjct: 319 MVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 378

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV-YNLQPQTEH 464
           +  KAL++F EM   G +PD VT   V+S+C+    +E G +  +++ R  + L      
Sbjct: 379 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS- 437

Query: 465 YGCMVDLFGRAGLIREALDLIKSM 488
              +VD++G+ G +  A ++ + +
Sbjct: 438 -SALVDMYGKCGCLEMAKEVFEQI 460


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/612 (36%), Positives = 344/612 (56%), Gaps = 58/612 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQH---QTQILYDKIISLSRGNEIENLSL-----QNPQ 82
           L+S  S+ QLKQ  A I  TG        +++L     +LS   +I    L     + P 
Sbjct: 59  LQSCSSMFQLKQIQAHITCTGLMNQIFPASRLL--AFCALSDSGDIHYAHLIFDQTELPN 116

Query: 83  VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
            + +N +I+    AN P    + +R+M+      ++ +  + LKAC Q     VG  VH+
Sbjct: 117 CFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHS 176

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
              K    S+++V N L++ Y   G +    ++F       + +D+V+WTT+I  Y + +
Sbjct: 177 VIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFD----ESSVKDVVTWTTMINGYARNN 232

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           +  EAI  F  M  ++++P+ + ++ +LSACS+ GD  +G  +H +I       S ++  
Sbjct: 233 WLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLL- 291

Query: 262 HNALIDMYLKCG-------------------------------NIPSARKVFDEMPVKNV 290
            NA++DMY+KCG                               ++ SARK+FDEMP +N+
Sbjct: 292 -NAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNI 350

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           VSWN+MIAG +   Q  EAL++F  M   +GL P + TLVCVL++   +G LE+G+ +H 
Sbjct: 351 VSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHC 410

Query: 350 YLDKNHINTDGF-----IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
               NH+N  G      + NA++DMYAKCG ID A  +F SM  +++ S+ +MI   A +
Sbjct: 411 ----NHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASY 466

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G A KAL +F +M   G++PD +TF+GVLSACS+ G V EG  HF  M   + ++P+ EH
Sbjct: 467 GHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREH 526

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           Y CMVDL  R GL++EA +LI  MP+      WGALL AC+ H  VE+A++  E L+  +
Sbjct: 527 YACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELD 586

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           PE  G Y L+ NI +   +WK+   +R+ M+ER VKK PG SL+E+ G+F+EF   D SH
Sbjct: 587 PEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKFHEFLVADTSH 646

Query: 585 PKTLEIYKLLDE 596
            ++ EIY++++E
Sbjct: 647 TRSSEIYRVVNE 658



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 225/506 (44%), Gaps = 87/506 (17%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL-----IKAVHKLFHF 177
           +L++C    S+   +Q+ A+   T L++ ++      RL A C L     I   H +F  
Sbjct: 58  ILQSC---SSMFQLKQIQAHITCTGLMNQIF---PASRLLAFCALSDSGDIHYAHLIFDQ 111

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
            + P    +   W T+I+ Y K ++P+     F  M +     D    V  L AC +  +
Sbjct: 112 TELP----NCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAE 167

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
             +G+ +H  I    F+   D+F+ N LI  Y++ G +  AR++FDE  VK+VV+W +MI
Sbjct: 168 KIVGMAVHSVIWKRGFD--SDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMI 225

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
            G        EA+ +F  M    +KP++ T++ +L++C+  G  E+GK +H ++ +  I 
Sbjct: 226 NGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDIT 285

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
               + NA++DMY KCG +  A  +F +M+ RDV+S+T+++ G A +G    A  +F EM
Sbjct: 286 CSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEM 345

Query: 418 SQ--------------------------------VGIEPDEVTFVGVLSACSHAGLVEEG 445
            +                                VG+ P E T V VLSA    G +E G
Sbjct: 346 PERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMG 405

Query: 446 ----CKH---------------FLDM----------SRVYNLQPQTE--HYGCMVDLFGR 474
               C H                +DM          +++++  P+     +  M+  +  
Sbjct: 406 QEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYAS 465

Query: 475 AGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEI---VMENLVRFEPEGD 528
            G  ++AL L   M    L PD   +  +L AC     V   +     MEN    EP+ +
Sbjct: 466 YGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKRE 525

Query: 529 GAYILMTNIYSSKNRWKEALKLRKKM 554
             Y  M ++ S     KEA +L  +M
Sbjct: 526 -HYACMVDLLSRVGLLKEAYELISRM 550


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/587 (34%), Positives = 335/587 (57%), Gaps = 16/587 (2%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS------LQNP 81
           S    S +SV   +Q H FI+K+G  +  +  + + +++    N+  + +      +   
Sbjct: 51  SKSFSSLRSVHGGEQLHGFILKSGFGERNS--VGNSLVAFYLKNQRVDSARKVFDEMTER 108

Query: 82  QVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V  +N II   +SN    + ++++ +ML+ G+  +  T+  V   C  S+ + +G+ VH
Sbjct: 109 DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 168

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           +  +K          NTL+ +Y+ CG + +   +F       + R +VS+T++I  Y + 
Sbjct: 169 SIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR----EMSDRSVVSYTSMIAGYARE 224

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               EA+  F +M +  + PD   +  VL+ C++   L  G ++H +I +N  +L  D+F
Sbjct: 225 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN--DLGFDIF 282

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGL 319
           + NAL+DMY KCG++  A  VF EM VK+++SWN++I G +      EAL +F  + +  
Sbjct: 283 VSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK 342

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
              PD+ T+ CVL +CA++   + G+ +H Y+ +N   +D  + N+LVDMYAKCG +  A
Sbjct: 343 RFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 402

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             +F  +  +D+ S+T MI G  +HG   +A+ +F++M Q GIE DE++FV +L ACSH+
Sbjct: 403 HMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHS 462

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLV+EG + F  M     ++P  EHY C+VD+  R G + +A   I++MP+ PDA +WGA
Sbjct: 463 GLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGA 522

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           LL  C+IH  V+LAE V E +   EPE  G Y+LM NIY+   +W++  +LRK++ +R +
Sbjct: 523 LLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGL 582

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           +K PGCS +E+ G    F  GD S+P+T  I   L ++  +    GY
Sbjct: 583 RKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGY 629



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/434 (29%), Positives = 219/434 (50%), Gaps = 18/434 (4%)

Query: 81  PQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
            +   +N ++  L+ +     +I L+++M+  G+  ++YT   V K+    +S+  G+Q+
Sbjct: 7   EKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQL 66

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H + +K+       V N+L+  Y     + +  K+F        +RD++SW ++I  YV 
Sbjct: 67  HGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVF----DEMTERDVISWNSIINGYVS 122

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
                + +  F  M  + +  D   +V V + C+    +SLG  +H       F+   D 
Sbjct: 123 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFS-REDR 181

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
           F  N L+DMY KCG++ SA+ VF EM  ++VVS+ SMIAG    G   EA+ +F  M+  
Sbjct: 182 FC-NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G+ PD +T+  VLN CA    L+ GK VH ++ +N +  D F+ NAL+DMYAKCG + +A
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 300

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS-EMSQVGIEPDEVTFVGVLSACSH 438
             VF  M+ +D+ S+  +I G + +  A +AL +F+  + +    PDE T   VL AC+ 
Sbjct: 301 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 360

Query: 439 AGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA---LDLIKSMPLVPDA 494
               ++G + H   M   Y       +   +VD++ + G +  A    D I S  LV   
Sbjct: 361 LSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIASKDLVS-- 416

Query: 495 FVWGALLGACKIHA 508
             W  ++    +H 
Sbjct: 417 --WTVMIAGYGMHG 428



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 118/256 (46%), Gaps = 33/256 (12%)

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           FDE+ ++  + WN ++  L   G F  ++ +F++M   G++ D +T  CV  S +++  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
             G+ +H ++ K+       +GN+LV  Y K  R+D A  VF  M  RDV S+ ++I G 
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG---------------- 445
             +G A K L +F +M   GIE D  T V V + C+ + L+  G                
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 446 --CKHFLDM-SRVYNLQPQTE-----------HYGCMVDLFGRAGLIREALDLIKSMP-- 489
             C   LDM S+  +L                 Y  M+  + R GL  EA+ L + M   
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 490 -LVPDAFVWGALLGAC 504
            + PD +   A+L  C
Sbjct: 241 GISPDVYTVTAVLNCC 256


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/587 (34%), Positives = 335/587 (57%), Gaps = 16/587 (2%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS------LQNP 81
           S    S +SV   +Q H FI+K+G  +  +  + + +++    N+  + +      +   
Sbjct: 202 SKSFSSLRSVHGGEQLHGFILKSGFGERNS--VGNSLVAFYLKNQRVDSARKVFDEMTER 259

Query: 82  QVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V  +N II   +SN    + ++++ +ML+ G+  +  T+  V   C  S+ + +G+ VH
Sbjct: 260 DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 319

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           +  +K          NTL+ +Y+ CG + +   +F       + R +VS+T++I  Y + 
Sbjct: 320 SIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR----EMSDRSVVSYTSMIAGYARE 375

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               EA+  F +M +  + PD   +  VL+ C++   L  G ++H +I +N  +L  D+F
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN--DLGFDIF 433

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGL 319
           + NAL+DMY KCG++  A  VF EM VK+++SWN++I G +      EAL +F  + +  
Sbjct: 434 VSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK 493

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
              PD+ T+ CVL +CA++   + G+ +H Y+ +N   +D  + N+LVDMYAKCG +  A
Sbjct: 494 RFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 553

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             +F  +  +D+ S+T MI G  +HG   +A+ +F++M Q GIE DE++FV +L ACSH+
Sbjct: 554 HMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHS 613

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLV+EG + F  M     ++P  EHY C+VD+  R G + +A   I++MP+ PDA +WGA
Sbjct: 614 GLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGA 673

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           LL  C+IH  V+LAE V E +   EPE  G Y+LM NIY+   +W++  +LRK++ +R +
Sbjct: 674 LLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGL 733

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           +K PGCS +E+ G    F  GD S+P+T  I   L ++  +    GY
Sbjct: 734 RKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGY 780



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 243/493 (49%), Gaps = 20/493 (4%)

Query: 22  LSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNP 81
           L L   S  L+  K V    + + F+I + +   +  ++Y     L   + + +  ++  
Sbjct: 101 LQLCADSKSLKDGKEVDNFIRGNGFVIDS-NLGSKLSLMYTNCGDLKEASRVFD-EVKIE 158

Query: 82  QVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           +   +N ++  L+ +     +I L+++M+  G+  ++YT   V K+    +S+  G+Q+H
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLH 218

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            + +K+       V N+L+  Y     + +  K+F        +RD++SW ++I  YV  
Sbjct: 219 GFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVF----DEMTERDVISWNSIINGYVSN 274

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               + +  F  M  + +  D   +V V + C+    +SLG  +H       F+   D F
Sbjct: 275 GLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFS-REDRF 333

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
             N L+DMY KCG++ SA+ VF EM  ++VVS+ SMIAG    G   EA+ +F  M+  G
Sbjct: 334 C-NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           + PD +T+  VLN CA    L+ GK VH ++ +N +  D F+ NAL+DMYAKCG + +A 
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS-EMSQVGIEPDEVTFVGVLSACSHA 439
            VF  M+ +D+ S+  +I G + +  A +AL +F+  + +    PDE T   VL AC+  
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 512

Query: 440 GLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA---LDLIKSMPLVPDAF 495
              ++G + H   M   Y       +   +VD++ + G +  A    D I S  LV    
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIASKDLVS--- 567

Query: 496 VWGALLGACKIHA 508
            W  ++    +H 
Sbjct: 568 -WTVMIAGYGMHG 579



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 146/317 (46%), Gaps = 35/317 (11%)

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D   L  VL  C+    L  G ++  +I  N F +  D  + + L  MY  CG++  A +
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVI--DSNLGSKLSLMYTNCGDLKEASR 150

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VFDE+ ++  + WN ++  L   G F  ++ +F++M   G++ D +T  CV  S +++  
Sbjct: 151 VFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 210

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           +  G+ +H ++ K+       +GN+LV  Y K  R+D A  VF  M  RDV S+ ++I G
Sbjct: 211 VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 270

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG--------------- 445
              +G A K L +F +M   GIE D  T V V + C+ + L+  G               
Sbjct: 271 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 330

Query: 446 ---CKHFLDM-SRVYNLQPQTE-----------HYGCMVDLFGRAGLIREALDLIKSMP- 489
              C   LDM S+  +L                 Y  M+  + R GL  EA+ L + M  
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390

Query: 490 --LVPDAFVWGALLGAC 504
             + PD +   A+L  C
Sbjct: 391 EGISPDVYTVTAVLNCC 407


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 324/572 (56%), Gaps = 13/572 (2%)

Query: 41  KQFHAFIIKTGSPQHQ---TQIL--YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           +Q HA  IK      +   T I+  Y K  SL+         L N  V   N ++  L  
Sbjct: 312 RQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARR-AFFGLPNHTVETSNAMMVGLVR 370

Query: 96  AN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           A   +EA+ L++ M+   +  +  +L  V  AC +++    GQQVH  ++K+    ++ V
Sbjct: 371 AGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICV 430

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N ++ LY  C  +   + +F   +    Q+D VSW  +I A  +  +  + IL F +M 
Sbjct: 431 NNAVLDLYGKCKALMEAYLIFQGMK----QKDSVSWNAIIAALEQNGHYDDTILHFNEML 486

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  ++PD      VL AC+ L  L  G+ +H  +  +   L  D F+ + ++DMY KCG 
Sbjct: 487 RFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS--GLGSDAFVASTVVDMYCKCGI 544

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I  A+K+ D +  + VVSWN++++G +   + +EA   F  M  +GLKPD FT   VL++
Sbjct: 545 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 604

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CAN+  +ELGK +H  + K  +  D +I + LVDMYAKCG +  +  VF  ++ RD  S+
Sbjct: 605 CANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 664

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            AMI G A+HG   +AL +F  M +  + P+  TFV VL ACSH GL ++GC++F  M+ 
Sbjct: 665 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 724

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y L+PQ EH+ CMVD+ GR+   +EA+  I SMP   DA +W  LL  CKI   VE+AE
Sbjct: 725 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAE 784

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
           +   N++  +P+    YIL++N+Y+   +W +  + R+ +K+ ++KK PGCS +EV  E 
Sbjct: 785 LAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEM 844

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           + F  GDK+HP++ E+Y++L++++ + K  GY
Sbjct: 845 HGFLVGDKAHPRSGELYEMLNDLIGEMKLSGY 876



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 180/375 (48%), Gaps = 10/375 (2%)

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
           +NT++  Y+  G I     LF     P    D+VSW  L+  Y +     E++  F +M 
Sbjct: 128 WNTMLTAYSHAGDISTAVALFDGMPDP----DVVSWNALVSGYCQRGMFQESVDLFVEMA 183

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  + PD     ++L +CS L +LSLG+++H         L  DV   +AL+DMY KC +
Sbjct: 184 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKT--GLEIDVRTGSALVDMYGKCRS 241

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A   F  MP +N VSW + IAG     Q+   L++F  MQ LGL     +      S
Sbjct: 242 LDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRS 301

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA +  L  G+ +H +  KN  ++D  +G A+VD+YAK   +  A   F  +    V + 
Sbjct: 302 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 361

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA-GLVEEGCKHFLDMS 453
            AM+VGL   G   +A+ +F  M +  I  D V+  GV SAC+   G  +    H L + 
Sbjct: 362 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 421

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
             +++     +   ++DL+G+   + EA  + + M    D+  W A++ A + +   +  
Sbjct: 422 SGFDVDICVNN--AVLDLYGKCKALMEAYLIFQGMKQ-KDSVSWNAIIAALEQNGHYDDT 478

Query: 514 EIVMENLVRFEPEGD 528
            +    ++RF  + D
Sbjct: 479 ILHFNEMLRFGMKPD 493



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/519 (25%), Positives = 239/519 (46%), Gaps = 49/519 (9%)

Query: 78  LQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + +P V  +N ++          E++ L+ EM  +G+ P+  T   +LK+C   + L +G
Sbjct: 151 MPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLG 210

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            QVHA ++KT L  +V   + L+ +Y  C  +     L  F   P+  R+ VSW   I  
Sbjct: 211 VQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD--DALCFFYGMPE--RNWVSWGAAIAG 266

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            V+ +     +  F +M +  L            +C+ +  L+ G ++H +   N F  S
Sbjct: 267 CVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKF--S 324

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D  +  A++D+Y K  ++  AR+ F  +P   V + N+M+ GL   G   EA+ +F+ M
Sbjct: 325 SDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFM 384

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
               ++ D  +L  V ++CA       G+ VH    K+  + D  + NA++D+Y KC  +
Sbjct: 385 IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKAL 444

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
            +A+ +F+ MK +D  S+ A+I  L  +G     +  F+EM + G++PD+ T+  VL AC
Sbjct: 445 MEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKAC 504

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHY--GCMVDLFGRAGLIREALDL---------- 484
           +    +E G    +   +V      ++ +    +VD++ + G+I EA  L          
Sbjct: 505 AALRSLEYG---LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVV 561

Query: 485 ------------------------IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
                                   +  M L PD F +  +L  C   A +EL + +   +
Sbjct: 562 SWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQI 621

Query: 521 VRFEPEGDGAYILMT--NIYSSKNRWKEALKLRKKMKER 557
           ++ E   D  YI  T  ++Y+      ++L + +K+++R
Sbjct: 622 IKQEML-DDEYISSTLVDMYAKCGDMPDSLLVFEKVEKR 659



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 156/317 (49%), Gaps = 13/317 (4%)

Query: 34  SKSVGQLKQFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           +K   Q +Q H   IK+G        +    LY K  +L     I     Q   V  +N 
Sbjct: 406 TKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVS-WNA 464

Query: 89  IIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           II  L  N +  + I  + EML  G+ P+ +T   VLKAC   +SL  G  VH   +K+ 
Sbjct: 465 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 524

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
           L S+ +V +T++ +Y  CG+I    KL H R   Q    +VSW  ++  +       EA 
Sbjct: 525 LGSDAFVASTVVDMYCKCGIIDEAQKL-HDRIGGQ---QVVSWNAILSGFSLNKESEEAQ 580

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F +M    L+PD      VL  C+ L  + LG +IH  I      +  D +I + L+D
Sbjct: 581 KFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQE--MLDDEYISSTLVD 638

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY KCG++P +  VF+++  ++ VSWN+MI G    G   EAL +F RMQ   + P+  T
Sbjct: 639 MYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHAT 698

Query: 328 LVCVLNSCANIGWLELG 344
            V VL +C+++G  + G
Sbjct: 699 FVAVLRACSHVGLFDDG 715



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 2/195 (1%)

Query: 253 FNLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
           F+  P  D    N ++  Y   G+I +A  +FD MP  +VVSWN++++G   RG F+E++
Sbjct: 117 FDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESV 176

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           D+F  M   G+ PD  T   +L SC+ +  L LG  VH    K  +  D   G+ALVDMY
Sbjct: 177 DLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMY 236

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
            KC  +D A   F  M  R+  S+ A I G   + +  + L++F EM ++G+   + ++ 
Sbjct: 237 GKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYA 296

Query: 431 GVLSACSHAGLVEEG 445
               +C+    +  G
Sbjct: 297 SAFRSCAAMSCLNTG 311



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 157/360 (43%), Gaps = 41/360 (11%)

Query: 82  QVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           QV  +N I+   S N    EA   + EML  GL P+ +T   VL  C    ++ +G+Q+H
Sbjct: 559 QVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIH 618

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              +K  +L + Y+ +TL+ +YA CG +     +F   +    +RD VSW  +I  Y   
Sbjct: 619 GQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVE----KRDFVSWNAMICGYALH 674

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               EA+  F  M + N+ P+    V VL ACS +G    G +    +T  H+ L P + 
Sbjct: 675 GLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMT-THYKLEPQLE 733

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
               ++D+  +      A K  + MP + + V W ++++    R   + A         L
Sbjct: 734 HFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAE--LAASNVL 791

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            L PDD ++  +L++     + E GKW      +  +               K GR+ + 
Sbjct: 792 LLDPDDSSVYILLSNV----YAESGKWADVSRTRRLL---------------KQGRLKKE 832

Query: 380 FGVFRSMKCRDVYSYTAM---IVGLAIH---GKAWKAL-DIFSEMSQVGIEPDEVTFVGV 432
            G      C  +   + M   +VG   H   G+ ++ L D+  EM   G EPD  +FV V
Sbjct: 833 PG------CSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMKLSGYEPDSASFVEV 886



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 35/177 (19%)

Query: 360 GFIGNALVDM-------------------------------YAKCGRIDQAFGVFRSMKC 388
            F+ N L+ M                               Y+  G I  A  +F  M  
Sbjct: 94  AFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPD 153

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK- 447
            DV S+ A++ G    G   +++D+F EM++ G+ PD  TF  +L +CS    +  G + 
Sbjct: 154 PDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV 213

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           H L +     +  +T     +VD++G+   + +AL     MP   +   WGA +  C
Sbjct: 214 HALAVKTGLEIDVRTG--SALVDMYGKCRSLDDALCFFYGMP-ERNWVSWGAAIAGC 267


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/536 (38%), Positives = 319/536 (59%), Gaps = 16/536 (2%)

Query: 82   QVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
             V+ +N +I  L+   + +EA+  +  +   GL+P   + P  +K+C     L  G+  H
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 1165

Query: 141  AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              +      ++++V + L+ +Y+ CG +K    LF   + P   R++VSWT++I  YV+ 
Sbjct: 1166 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFD--EIPL--RNVVSWTSMITGYVQN 1221

Query: 201  DYPTEAILSFFDMCQA--------NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
            +    A+L F D  +         N+  D +++V VLSACS++    +   +H ++    
Sbjct: 1222 EQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKG 1281

Query: 253  FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
            F+ S  + + N L+D Y KCG    ++KVFD M  K+ +SWNSMIA     G   EAL++
Sbjct: 1282 FDGS--IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEV 1339

Query: 313  FRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
            F  M + +G++ +  TL  VL +CA+ G L  GK +H  + K  +  +  +G +++DMY 
Sbjct: 1340 FHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYC 1399

Query: 372  KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
            KCGR++ A   F  MK ++V S+TAM+ G  +HG+A +ALDIF +M + G++P+ +TFV 
Sbjct: 1400 KCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVS 1459

Query: 432  VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
            VL+ACSHAGLVEEG   F  M   Y+++P  EHYGCMVDLFGRAG + EA +LIK M + 
Sbjct: 1460 VLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMK 1519

Query: 492  PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
            PD  VWG+LLGAC+IH  V+L EI  + L   +P+  G Y+L++N+Y+   RW +  ++R
Sbjct: 1520 PDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMR 1579

Query: 552  KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              MK R++ K PG SLVE+ G  + F  GDK HP    IYK L+++  + +  GY+
Sbjct: 1580 MLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYV 1635



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 131/398 (32%), Positives = 212/398 (53%), Gaps = 40/398 (10%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           ++L+ C   + LR   Q+HA  +++ L ++  +   L+ LY+  G I     LF+  Q+P
Sbjct: 32  FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
                  +W  +I+A        +A++ + +M    +  D      V+ AC+    + LG
Sbjct: 89  CT----FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG 144

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCG---------------------------- 273
             +H  +    +  S DVF+ N LID Y KCG                            
Sbjct: 145 KVVHGSLIK--YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLI 202

Query: 274 ---NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
              ++  AR++FDE+P KNVVSW +MI G     Q +EAL++F+RMQ   + P+++T+V 
Sbjct: 203 SCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVS 262

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           ++ +C  +G L LG+ +H Y  KN I    ++G AL+DMY+KCG I  A  VF +M  + 
Sbjct: 263 LIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKS 322

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           + ++ +MI  L +HG   +AL++FSEM +V ++PD +TF+GVL AC H   V+EGC +F 
Sbjct: 323 LPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFT 382

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
            M++ Y + P  EHY CM +L+ R+  + EA    K +
Sbjct: 383 RMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 120/387 (31%), Positives = 198/387 (51%), Gaps = 43/387 (11%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENLSL-----QNPQVY 84
           L++ K+   L+Q HA II++G      Q+L  K+I L S    I    L     QNP  +
Sbjct: 34  LQNCKNFKHLRQIHAKIIRSG--LSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTF 91

Query: 85  LYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            +N II+  + N    +A+ LY+ M+ +G+  + +T P+V+KAC    S+ +G+ VH   
Sbjct: 92  TWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL 151

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------------------------- 176
           +K     +V+V N L+  Y  CG  +   K+F                            
Sbjct: 152 IKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEAR 211

Query: 177 --FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
             F + P   +++VSWT +I  Y++   P EA+  F  M   N+ P+   +V ++ AC++
Sbjct: 212 RIFDEIP--SKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           +G L+LG  IH Y   N   +   V++  ALIDMY KCG+I  A +VF+ MP K++ +WN
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIG--VYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWN 327

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           SMI  L   G  +EAL++F  M+ + +KPD  T + VL +C +I  ++ G    T + ++
Sbjct: 328 SMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 387

Query: 355 H-INTDGFIGNALVDMYAKCGRIDQAF 380
           + I         + ++YA+   +D+AF
Sbjct: 388 YGIAPIPEHYECMTELYARSNNLDEAF 414



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 149/370 (40%), Gaps = 74/370 (20%)

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           LS D  +   LI +Y   G I  A  +F ++      +WN +I   T  G  ++AL +++
Sbjct: 55  LSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYK 114

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            M   G+  D FT   V+ +C N   ++LGK VH  L K   + D F+ N L+D Y KCG
Sbjct: 115 NMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCG 174

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK-----------------AW--------- 408
               A  VF  M+ R+V S+T +I GL   G                  +W         
Sbjct: 175 HTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIR 234

Query: 409 -----KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------------------ 445
                +AL++F  M    I P+E T V ++ AC+  G++  G                  
Sbjct: 235 NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYL 294

Query: 446 ----------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMPLV-- 491
                     C    D   V+   P+     +  M+   G  GL +EAL+L   M  V  
Sbjct: 295 GTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNV 354

Query: 492 -PDAFVWGALLGACKIHAK------VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
            PDA  +  +L AC +H K           +     +   PE    Y  MT +Y+  N  
Sbjct: 355 KPDAITFIGVLCAC-VHIKNVKEGCAYFTRMTQHYGIAPIPE---HYECMTELYARSNNL 410

Query: 545 KEALKLRKKM 554
            EA K  K++
Sbjct: 411 DEAFKSTKEV 420



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 99/193 (51%), Gaps = 5/193 (2%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N  P EA+ L++ M  + + PN YT+  ++KAC +   L +G+ +H Y++K  +   V
Sbjct: 233 IRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGV 292

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           Y+   L+ +Y+ CG IK   ++F        ++ L +W ++I +        EA+  F +
Sbjct: 293 YLGTALIDMYSKCGSIKDAIEVF----ETMPRKSLPTWNSMITSLGVHGLGQEALNLFSE 348

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M + N++PD +  + VL AC  + ++  G      +T  H+ ++P    +  + ++Y + 
Sbjct: 349 MERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMT-QHYGIAPIPEHYECMTELYARS 407

Query: 273 GNIPSARKVFDEM 285
            N+  A K   E+
Sbjct: 408 NNLDEAFKSTKEV 420


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/564 (36%), Positives = 320/564 (56%), Gaps = 43/564 (7%)

Query: 79  QNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           + P  Y+   +++  L    P  A+AL+R +L   L  +  T+ + +KA   S S    +
Sbjct: 93  EGPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSSS--PAE 150

Query: 138 QVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            +H  + K   +  +V V N L+ +YA    +    KLF       A RD+VSWTTL+  
Sbjct: 151 AIHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFD----EMADRDVVSWTTLVDG 206

Query: 197 YVKMDYPTEAILSFFDMCQANLR-PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           Y +   P EA   F  M  A    P+ + LV   SA  ++G L LG  +H+ + ++   +
Sbjct: 207 YARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRM 266

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF--------- 306
           S  V + NAL+DM+ KCG + SA+++FD MP+K+V SW SM++     G           
Sbjct: 267 S--VNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKE 324

Query: 307 ----------------------KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
                                 +EA+ IF  M   G++P D TLV VL++CA +G L++G
Sbjct: 325 IPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVG 384

Query: 345 KWVH-TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           + ++  Y+  + +     + NA +DM+AKCG +  A  +FR+M+ ++V S+  MIV  A+
Sbjct: 385 RCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHAL 444

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           HG++ +AL +F +   +GI PDE+T++GVLSACSH+GLV EG  HF +M  VY ++P+ E
Sbjct: 445 HGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAE 504

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           HY CM+DL G+ GL+ EA ++ +SMP+  D   WGALL AC++H  VE+ +   + LV  
Sbjct: 505 HYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGL 564

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           +P   G Y+LM+ IY+SK++W +   +R  M++R VKK PGCS +EV G+F+EF   D S
Sbjct: 565 DPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDGKFHEFLAADVS 624

Query: 584 HPKTLEIYKLLDEIMHQSKNHGYI 607
           H  + +IY  L+ I   SK  GYI
Sbjct: 625 HAHSEDIYAALENIYLHSKLEGYI 648


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/514 (37%), Positives = 306/514 (59%), Gaps = 7/514 (1%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           +SN    + + L+ +ML+ G+  +  T+  V+  C  +  L +G+ +H Y++K +    +
Sbjct: 227 VSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKEL 286

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            + N L+ +Y+  G + +  ++F        +R +VSWT++I  Y +      ++  F +
Sbjct: 287 TLNNCLLDMYSKSGNLNSAIQVFE----TMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 342

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +  + PD   +  +L AC+  G L  G  +H YI +N   +  D+F+ NAL+DMY KC
Sbjct: 343 MEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKEN--KMQSDLFVSNALMDMYAKC 400

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G++  A  VF EM VK++VSWN+MI G +      EAL++F  MQ    KP+  T+ C+L
Sbjct: 401 GSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQ-YNSKPNSITMACIL 459

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +CA++  LE G+ +H ++ +N  + D  + NALVDMY KCG +  A  +F  +  +D+ 
Sbjct: 460 PACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLV 519

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+T MI G  +HG   +A+  F+EM   GIEPDEV+F+ +L ACSH+GL++EG   F  M
Sbjct: 520 SWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMM 579

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
                ++P++EHY C+VDL  RAG + +A   IK MP+ PDA +WGALL  C+I+  V+L
Sbjct: 580 RNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKL 639

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           AE V E++   EPE  G Y+L+ NIY+   +W+E  KLR+++  R ++K PGCS +E+ G
Sbjct: 640 AEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKG 699

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           + + F  GD SHP   +I  LL +   + K  G+
Sbjct: 700 KVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGH 733



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/437 (29%), Positives = 214/437 (48%), Gaps = 36/437 (8%)

Query: 90  IQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           ++ + +   + +I    ++ + G+L +     YV         LR G+++          
Sbjct: 114 LKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYV-----TCGDLREGRRI----FDKVAN 164

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFH------FRQHPQAQ--------RDLVSWTTLIQ 195
             V+++N LM  YA  G  +    LF        R+   A+        RD++SW ++I 
Sbjct: 165 EKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMIS 224

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            YV      + +  F  M    +  D   +V V++ CS  G L LG  +H Y     F  
Sbjct: 225 GYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASF-- 282

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             ++ ++N L+DMY K GN+ SA +VF+ M  ++VVSW SMIAG    G    ++ +F  
Sbjct: 283 GKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 342

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+  G+ PD FT+  +L++CA  G LE GK VH Y+ +N + +D F+ NAL+DMYAKCG 
Sbjct: 343 MEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGS 402

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +  A  VF  M+ +D+ S+  MI G + +    +AL++F EM Q   +P+ +T   +L A
Sbjct: 403 MGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPA 461

Query: 436 CSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLF---GRAGLIREALDLIKSMPLV 491
           C+    +E G + H   +   ++L     +   +VD++   G  GL R   D+I    LV
Sbjct: 462 CASLAALERGQEIHGHILRNGFSLDRHVAN--ALVDMYLKCGALGLARLLFDMIPEKDLV 519

Query: 492 PDAFVWGALLGACKIHA 508
                W  ++    +H 
Sbjct: 520 S----WTVMIAGYGMHG 532



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 149/325 (45%), Gaps = 53/325 (16%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL  C+ L  +  G +IH  I  N  ++  D  + + L+ MY+ CG++   R++FD++  
Sbjct: 107 VLQLCADLKSIQDGRRIHSIIQSN--DVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVAN 164

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK------------------------- 322
           + V  WN ++ G    G F+E+L +F+RM+ LG++                         
Sbjct: 165 EKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMIS 224

Query: 323 ------------------------PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
                                    D  T+V V+  C+N G L LG+ +H Y  K     
Sbjct: 225 GYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGK 284

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           +  + N L+DMY+K G ++ A  VF +M  R V S+T+MI G A  G +  ++ +F EM 
Sbjct: 285 ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEME 344

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
           + GI PD  T   +L AC+  GL+E G K   +  +   +Q        ++D++ + G +
Sbjct: 345 KEGISPDIFTITTILHACACTGLLENG-KDVHNYIKENKMQSDLFVSNALMDMYAKCGSM 403

Query: 479 REALDLIKSMPLVPDAFVWGALLGA 503
            +A  +   M  V D   W  ++G 
Sbjct: 404 GDAHSVFSEMQ-VKDIVSWNTMIGG 427



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 130/312 (41%), Gaps = 61/312 (19%)

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD-D 325
           ++Y  C  I ++    + +  K +  +N  I      G  + A+++  +      KPD +
Sbjct: 46  NLYHSCATIGTSVLPSETIDCK-ITDYNIEICRFCELGNLRRAMELINQSP----KPDLE 100

Query: 326 FTLVC-VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG---------- 374
               C VL  CA++  ++ G+ +H+ +  N +  DG +G+ LV MY  CG          
Sbjct: 101 LRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFD 160

Query: 375 ---------------------------------------RIDQAFGVFRSMKCRDVYSYT 395
                                                  R++ A  +F  +  RDV S+ 
Sbjct: 161 KVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWN 220

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI G   +G + K LD+F +M  +GI  D  T V V++ CS+ G++  G +     +  
Sbjct: 221 SMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLG-RALHGYAIK 279

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
            +   +     C++D++ ++G +  A+ + ++M        W +++     +A+  L+++
Sbjct: 280 ASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAG---YAREGLSDM 335

Query: 516 VMENLVRFEPEG 527
            +      E EG
Sbjct: 336 SVRLFHEMEKEG 347


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 324/572 (56%), Gaps = 13/572 (2%)

Query: 41  KQFHAFIIKTGSPQHQ---TQIL--YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           +Q HA  IK      +   T I+  Y K  SL+         L N  V   N ++  L  
Sbjct: 270 RQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARR-AFFGLPNHTVETSNAMMVGLVR 328

Query: 96  AN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           A   +EA+ L++ M+   +  +  +L  V  AC +++    GQQVH  ++K+    ++ V
Sbjct: 329 AGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICV 388

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N ++ LY  C  +   + +F   +    Q+D VSW  +I A  +  +  + IL F +M 
Sbjct: 389 NNAVLDLYGKCKALMEAYLIFQGMK----QKDSVSWNAIIAALEQNGHYDDTILHFNEML 444

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  ++PD      VL AC+ L  L  G+ +H  +  +   L  D F+ + ++DMY KCG 
Sbjct: 445 RFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS--GLGSDAFVASTVVDMYCKCGI 502

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I  A+K+ D +  + VVSWN++++G +   + +EA   F  M  +GLKPD FT   VL++
Sbjct: 503 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 562

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CAN+  +ELGK +H  + K  +  D +I + LVDMYAKCG +  +  VF  ++ RD  S+
Sbjct: 563 CANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 622

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            AMI G A+HG   +AL +F  M +  + P+  TFV VL ACSH GL ++GC++F  M+ 
Sbjct: 623 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 682

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y L+PQ EH+ CMVD+ GR+   +EA+  I SMP   DA +W  LL  CKI   VE+AE
Sbjct: 683 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAE 742

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
           +   N++  +P+    YIL++N+Y+   +W +  + R+ +K+ ++KK PGCS +EV  E 
Sbjct: 743 LAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEM 802

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           + F  GDK+HP++ E+Y++L++++ + K  GY
Sbjct: 803 HGFLVGDKAHPRSGELYEMLNDLIGEMKLSGY 834



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 196/417 (47%), Gaps = 14/417 (3%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           M++ G +PN +    +L+   +       ++V     +   +S    +NT++  Y+  G 
Sbjct: 43  MVVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVS----WNTMLTAYSHAGD 98

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           I     LF     P    D+VSW  L+  Y +     E++  F +M +  + PD     +
Sbjct: 99  ISTAVALFDGMPDP----DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAV 154

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +L +CS L +LSLG+++H         L  DV   +AL+DMY KC ++  A   F  MP 
Sbjct: 155 LLKSCSALEELSLGVQVHALAVKT--GLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 212

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           +N VSW + IAG     Q+   L++F  MQ LGL     +      SCA +  L  G+ +
Sbjct: 213 RNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQL 272

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H +  KN  ++D  +G A+VD+YAK   +  A   F  +    V +  AM+VGL   G  
Sbjct: 273 HAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLG 332

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHA-GLVEEGCKHFLDMSRVYNLQPQTEHYG 466
            +A+ +F  M +  I  D V+  GV SAC+   G  +    H L +   +++     +  
Sbjct: 333 IEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNN-- 390

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
            ++DL+G+   + EA  + + M    D+  W A++ A + +   +   +    ++RF
Sbjct: 391 AVLDLYGKCKALMEAYLIFQGMKQ-KDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 446



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/519 (25%), Positives = 239/519 (46%), Gaps = 49/519 (9%)

Query: 78  LQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + +P V  +N ++          E++ L+ EM  +G+ P+  T   +LK+C   + L +G
Sbjct: 109 MPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLG 168

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            QVHA ++KT L  +V   + L+ +Y  C  +     L  F   P+  R+ VSW   I  
Sbjct: 169 VQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD--DALCFFYGMPE--RNWVSWGAAIAG 224

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            V+ +     +  F +M +  L            +C+ +  L+ G ++H +   N F  S
Sbjct: 225 CVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKF--S 282

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D  +  A++D+Y K  ++  AR+ F  +P   V + N+M+ GL   G   EA+ +F+ M
Sbjct: 283 SDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFM 342

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
               ++ D  +L  V ++CA       G+ VH    K+  + D  + NA++D+Y KC  +
Sbjct: 343 IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKAL 402

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
            +A+ +F+ MK +D  S+ A+I  L  +G     +  F+EM + G++PD+ T+  VL AC
Sbjct: 403 MEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKAC 462

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHY--GCMVDLFGRAGLIREALDL---------- 484
           +    +E G    +   +V      ++ +    +VD++ + G+I EA  L          
Sbjct: 463 AALRSLEYG---LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVV 519

Query: 485 ------------------------IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
                                   +  M L PD F +  +L  C   A +EL + +   +
Sbjct: 520 SWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQI 579

Query: 521 VRFEPEGDGAYILMT--NIYSSKNRWKEALKLRKKMKER 557
           ++ E   D  YI  T  ++Y+      ++L + +K+++R
Sbjct: 580 IKQEML-DDEYISSTLVDMYAKCGDMPDSLLVFEKVEKR 617



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 156/317 (49%), Gaps = 13/317 (4%)

Query: 34  SKSVGQLKQFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           +K   Q +Q H   IK+G        +    LY K  +L     I     Q   V  +N 
Sbjct: 364 TKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVS-WNA 422

Query: 89  IIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           II  L  N +  + I  + EML  G+ P+ +T   VLKAC   +SL  G  VH   +K+ 
Sbjct: 423 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 482

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
           L S+ +V +T++ +Y  CG+I    KL H R   Q    +VSW  ++  +       EA 
Sbjct: 483 LGSDAFVASTVVDMYCKCGIIDEAQKL-HDRIGGQ---QVVSWNAILSGFSLNKESEEAQ 538

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F +M    L+PD      VL  C+ L  + LG +IH  I      +  D +I + L+D
Sbjct: 539 KFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQE--MLDDEYISSTLVD 596

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY KCG++P +  VF+++  ++ VSWN+MI G    G   EAL +F RMQ   + P+  T
Sbjct: 597 MYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHAT 656

Query: 328 LVCVLNSCANIGWLELG 344
            V VL +C+++G  + G
Sbjct: 657 FVAVLRACSHVGLFDDG 673



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 157/360 (43%), Gaps = 41/360 (11%)

Query: 82  QVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           QV  +N I+   S N    EA   + EML  GL P+ +T   VL  C    ++ +G+Q+H
Sbjct: 517 QVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIH 576

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              +K  +L + Y+ +TL+ +YA CG +     +F   +    +RD VSW  +I  Y   
Sbjct: 577 GQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVE----KRDFVSWNAMICGYALH 632

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               EA+  F  M + N+ P+    V VL ACS +G    G +    +T  H+ L P + 
Sbjct: 633 GLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMT-THYKLEPQLE 691

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
               ++D+  +      A K  + MP + + V W ++++    R   + A         L
Sbjct: 692 HFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAE--LAASNVL 749

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            L PDD ++  +L++     + E GKW      +  +               K GR+ + 
Sbjct: 750 LLDPDDSSVYILLSNV----YAESGKWADVSRTRRLL---------------KQGRLKKE 790

Query: 380 FGVFRSMKCRDVYSYTAM---IVGLAIH---GKAWKAL-DIFSEMSQVGIEPDEVTFVGV 432
            G      C  +   + M   +VG   H   G+ ++ L D+  EM   G EPD  +FV V
Sbjct: 791 PG------CSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMKLSGYEPDSASFVEV 844


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/438 (42%), Positives = 281/438 (64%), Gaps = 6/438 (1%)

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
           +   +H +++K    S ++V N L+ +YA+CG +    K+F         RDLVSW TLI
Sbjct: 42  ISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFD----GMLDRDLVSWNTLI 97

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
             Y + +   E +  F  M  AN++ D + +V ++ ACS LGD      + +YI +N  N
Sbjct: 98  CGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKEN--N 155

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           L  DV++ N LIDMY + GN+ +ARK+FD MP ++V+SW SMI G +   QF +A+ +F+
Sbjct: 156 LEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQ 215

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            M    +KPD  T+  VL++CA++G L++G  VH Y+ ++ +  D ++GN+L+DMY KCG
Sbjct: 216 EMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCG 275

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            +++A  VF  MK +D  S+T++I GLA++G A  ALD+FS+M + G++P   TFVG+L 
Sbjct: 276 MVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILL 335

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           AC+HAGLV +G ++F  M  V+ L P  +HYGC+VDL  R+G I +A + IK MP+VPD 
Sbjct: 336 ACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDV 395

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            VW  LL ACK+H  V LAEI  + L+  +P   G Y+L++N Y+  +RW +A+K+R+ M
Sbjct: 396 VVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELM 455

Query: 555 KERKVKKTPGCSLVEVYG 572
           ++  V+K  G S +EV G
Sbjct: 456 EDSDVQKPSGSSSIEVDG 473



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 157/312 (50%), Gaps = 16/312 (5%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E + L+  M    +  +  T+  ++ AC           +  Y  +  L  +VY+ NTL+
Sbjct: 108 EVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLI 167

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y   G + A  KLF        +RD++SWT++I  Y +    ++A+  F +M  A ++
Sbjct: 168 DMYGRLGNLTAARKLF----DNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVK 223

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + +  VLSAC+ LG L +G  +H YI      +  D+++ N+LIDMY KCG +  A 
Sbjct: 224 PDKVTVASVLSACAHLGKLDVGWAVHHYI--RRHGVQADIYVGNSLIDMYCKCGMVEKAL 281

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +VF  M  K+ VSW S+I+GL   G    ALD+F +M   G++P   T V +L +CA+ G
Sbjct: 282 EVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAG 341

Query: 340 WLELGKWVHTYLDKNHINTDGFIG-----NALVDMYAKCGRIDQAFGVFRSMK-CRDVYS 393
            +  G      ++  H    G +        +VD+ ++ G ID+A+   + M    DV  
Sbjct: 342 LVNKGLEYFESMESVH----GLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVV 397

Query: 394 YTAMIVGLAIHG 405
           +  ++    +HG
Sbjct: 398 WRILLSACKLHG 409



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 113/227 (49%), Gaps = 8/227 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ L++EM+   + P+  T+  VL AC     L VG  VH Y  +  + +++YV N+L+
Sbjct: 209 DAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLI 268

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y  CG+++   ++FH  +     +D VSWT++I       +   A+  F  M +  ++
Sbjct: 269 DMYCKCGMVEKALEVFHRMK----DKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQ 324

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P     V +L AC+  G ++ G++    +   H  L P +  +  ++D+  + GNI  A 
Sbjct: 325 PTHGTFVGILLACAHAGLVNKGLEYFESMESVH-GLVPAMKHYGCVVDLLSRSGNIDKAY 383

Query: 280 KVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           +   +MP V +VV W  +++     G    A    +R+  L L P D
Sbjct: 384 EFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRL--LELDPCD 428



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 10/169 (5%)

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           NI    +   +H +  K    +  F+ NAL+ MYA CG++  A  +F  M  RD+ S+  
Sbjct: 36  NINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNT 95

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I G + + K  + L +F  M+   I+ D VT V ++ ACSH G  E     F D    Y
Sbjct: 96  LICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWE-----FADSMVKY 150

Query: 457 ----NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
               NL+        ++D++GR G +  A  L  +MP   D   W +++
Sbjct: 151 IKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMP-KRDVISWTSMI 198


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 324/572 (56%), Gaps = 13/572 (2%)

Query: 41  KQFHAFIIKTGSPQHQ---TQIL--YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           +Q HA  IK      +   T I+  Y K  SL+         L N  V   N ++  L  
Sbjct: 270 RQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARR-AFFGLPNHTVETSNAMMVGLVR 328

Query: 96  AN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           A   +EA+ L++ M+   +  +  +L  V  AC +++    GQQVH  ++K+    ++ V
Sbjct: 329 AGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICV 388

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N ++ LY  C  +   + +F   +    Q+D VSW  +I A  +  +  + IL F +M 
Sbjct: 389 NNAVLDLYGKCKALMEAYLIFQGMK----QKDSVSWNAIIAALEQNGHYDDTILHFNEML 444

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  ++PD      VL AC+ L  L  G+ +H  +  +   L  D F+ + ++DMY KCG 
Sbjct: 445 RFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS--GLGSDAFVASTVVDMYCKCGI 502

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I  A+K+ D +  + VVSWN++++G +   + +EA   F  M  +GLKPD FT   VL++
Sbjct: 503 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 562

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CAN+  +ELGK +H  + K  +  D +I + LVDMYAKCG +  +  VF  ++ RD  S+
Sbjct: 563 CANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 622

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            AMI G A+HG   +AL +F  M +  + P+  TFV VL ACSH GL ++GC++F  M+ 
Sbjct: 623 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 682

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y L+PQ EH+ CMVD+ GR+   +EA+  I SMP   DA +W  LL  CKI   VE+AE
Sbjct: 683 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAE 742

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
           +   N++  +P+    YIL++N+Y+   +W +  + R+ +K+ ++KK PGCS +EV  E 
Sbjct: 743 LAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEM 802

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           + F  GDK+HP++ E+Y++L++++ + K  GY
Sbjct: 803 HGFLVGDKAHPRSGELYEMLNDLIGEMKLSGY 834



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 178/370 (48%), Gaps = 10/370 (2%)

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
           +NT++  Y+  G I     LF     P    D+VSW  L+  Y +     E++  F +M 
Sbjct: 86  WNTMLTAYSHAGDISTAVALFDGMPDP----DVVSWNALVSGYCQRGMFQESVDLFVEMA 141

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  + PD     ++L +CS L +LSLG+++H         L  DV   +AL+DMY KC +
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKT--GLEIDVRTGSALVDMYGKCRS 199

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A   F  MP +N VSW + IAG     Q+   L++F  MQ LGL     +      S
Sbjct: 200 LDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRS 259

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA +  L  G+ +H +  KN  ++D  +G A+VD+YAK   +  A   F  +    V + 
Sbjct: 260 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 319

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA-GLVEEGCKHFLDMS 453
            AM+VGL   G   +A+ +F  M +  I  D V+  GV SAC+   G  +    H L + 
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIK 379

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
             +++     +   ++DL+G+   + EA  + + M    D+  W A++ A + +   +  
Sbjct: 380 SGFDVDICVNN--AVLDLYGKCKALMEAYLIFQGMKQ-KDSVSWNAIIAALEQNGHYDDT 436

Query: 514 EIVMENLVRF 523
            +    ++RF
Sbjct: 437 ILHFNEMLRF 446



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/519 (25%), Positives = 239/519 (46%), Gaps = 49/519 (9%)

Query: 78  LQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + +P V  +N ++          E++ L+ EM  +G+ P+  T   +LK+C   + L +G
Sbjct: 109 MPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLG 168

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            QVHA ++KT L  +V   + L+ +Y  C  +     L  F   P+  R+ VSW   I  
Sbjct: 169 VQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD--DALCFFYGMPE--RNWVSWGAAIAG 224

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            V+ +     +  F +M +  L            +C+ +  L+ G ++H +   N F  S
Sbjct: 225 CVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKF--S 282

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D  +  A++D+Y K  ++  AR+ F  +P   V + N+M+ GL   G   EA+ +F+ M
Sbjct: 283 SDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFM 342

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
               ++ D  +L  V ++CA       G+ VH    K+  + D  + NA++D+Y KC  +
Sbjct: 343 IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKAL 402

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
            +A+ +F+ MK +D  S+ A+I  L  +G     +  F+EM + G++PD+ T+  VL AC
Sbjct: 403 MEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKAC 462

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHY--GCMVDLFGRAGLIREALDL---------- 484
           +    +E G    +   +V      ++ +    +VD++ + G+I EA  L          
Sbjct: 463 AALRSLEYG---LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVV 519

Query: 485 ------------------------IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
                                   +  M L PD F +  +L  C   A +EL + +   +
Sbjct: 520 SWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQI 579

Query: 521 VRFEPEGDGAYILMT--NIYSSKNRWKEALKLRKKMKER 557
           ++ E   D  YI  T  ++Y+      ++L + +K+++R
Sbjct: 580 IKQEML-DDEYISSTLVDMYAKCGDMPDSLLVFEKVEKR 617



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 156/317 (49%), Gaps = 13/317 (4%)

Query: 34  SKSVGQLKQFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           +K   Q +Q H   IK+G        +    LY K  +L     I     Q   V  +N 
Sbjct: 364 TKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVS-WNA 422

Query: 89  IIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           II  L  N +  + I  + EML  G+ P+ +T   VLKAC   +SL  G  VH   +K+ 
Sbjct: 423 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 482

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
           L S+ +V +T++ +Y  CG+I    KL H R   Q    +VSW  ++  +       EA 
Sbjct: 483 LGSDAFVASTVVDMYCKCGIIDEAQKL-HDRIGGQ---QVVSWNAILSGFSLNKESEEAQ 538

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F +M    L+PD      VL  C+ L  + LG +IH  I      +  D +I + L+D
Sbjct: 539 KFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQE--MLDDEYISSTLVD 596

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY KCG++P +  VF+++  ++ VSWN+MI G    G   EAL +F RMQ   + P+  T
Sbjct: 597 MYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHAT 656

Query: 328 LVCVLNSCANIGWLELG 344
            V VL +C+++G  + G
Sbjct: 657 FVAVLRACSHVGLFDDG 673



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 2/195 (1%)

Query: 253 FNLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
           F+  P  D    N ++  Y   G+I +A  +FD MP  +VVSWN++++G   RG F+E++
Sbjct: 75  FDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESV 134

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           D+F  M   G+ PD  T   +L SC+ +  L LG  VH    K  +  D   G+ALVDMY
Sbjct: 135 DLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMY 194

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
            KC  +D A   F  M  R+  S+ A I G   + +  + L++F EM ++G+   + ++ 
Sbjct: 195 GKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYA 254

Query: 431 GVLSACSHAGLVEEG 445
               +C+    +  G
Sbjct: 255 SAFRSCAAMSCLNTG 269



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 157/360 (43%), Gaps = 41/360 (11%)

Query: 82  QVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           QV  +N I+   S N    EA   + EML  GL P+ +T   VL  C    ++ +G+Q+H
Sbjct: 517 QVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIH 576

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              +K  +L + Y+ +TL+ +YA CG +     +F   +    +RD VSW  +I  Y   
Sbjct: 577 GQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVE----KRDFVSWNAMICGYALH 632

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               EA+  F  M + N+ P+    V VL ACS +G    G +    +T  H+ L P + 
Sbjct: 633 GLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMT-THYKLEPQLE 691

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
               ++D+  +      A K  + MP + + V W ++++    R   + A         L
Sbjct: 692 HFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAE--LAASNVL 749

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            L PDD ++  +L++     + E GKW      +  +               K GR+ + 
Sbjct: 750 LLDPDDSSVYILLSNV----YAESGKWADVSRTRRLL---------------KQGRLKKE 790

Query: 380 FGVFRSMKCRDVYSYTAM---IVGLAIH---GKAWKAL-DIFSEMSQVGIEPDEVTFVGV 432
            G      C  +   + M   +VG   H   G+ ++ L D+  EM   G EPD  +FV V
Sbjct: 791 PG------CSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMKLSGYEPDSASFVEV 844



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 35/177 (19%)

Query: 360 GFIGNALVDM-------------------------------YAKCGRIDQAFGVFRSMKC 388
            F+ N L+ M                               Y+  G I  A  +F  M  
Sbjct: 52  AFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPD 111

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK- 447
            DV S+ A++ G    G   +++D+F EM++ G+ PD  TF  +L +CS    +  G + 
Sbjct: 112 PDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV 171

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           H L +     +  +T     +VD++G+   + +AL     MP   +   WGA +  C
Sbjct: 172 HALAVKTGLEIDVRTG--SALVDMYGKCRSLDDALCFFYGMP-ERNWVSWGAAIAGC 225


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/566 (36%), Positives = 320/566 (56%), Gaps = 16/566 (2%)

Query: 37  VGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQ 91
           VG  K  H  +IK+G       ++   +   ++ N  E+       +    V  +N +I 
Sbjct: 122 VGYGKMVHTHVIKSGFAM-DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVIS 180

Query: 92  CL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
           C   +  P +A+ L+ EM + G  P++ TL  V+ +C +   L  G+++H   +++    
Sbjct: 181 CYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL 240

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR-DLVSWTTLIQAYVKMDYPTEAILS 209
           + +V + L+ +Y  CG ++   ++F      Q QR ++VSW ++I  Y         I  
Sbjct: 241 DGFVSSALVDMYGKCGCLEMAKEVFE-----QIQRKNVVSWNSMIAGYSLKGDSKSCIEL 295

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F  M +  +RP    L  +L ACS+  +L LG  IH YI  N   +  D+F++++LID+Y
Sbjct: 296 FRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNR--VEADIFVNSSLIDLY 353

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            KCGNI SA  VF  MP  NVVSWN MI+G    G + EAL IF  M+  G+KPD  T  
Sbjct: 354 FKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFT 413

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            VL +C+ +  LE GK +H ++ ++ +  +  +  AL+DMYAKCG +D+A  +F  +  R
Sbjct: 414 SVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER 473

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           D  S+T+MI     HG+A++AL +F +M Q   +PD+VTF+ +LSACSHAGLV+EGC +F
Sbjct: 474 DFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYF 533

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV-PDAFVWGALLGACKIHA 508
             M   Y  +P  EHY C++DL GR G +REA ++++  P +  D  +   L  AC +H 
Sbjct: 534 NQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHK 593

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
           K++L E +   L+  +P+    YI+++N+Y+S  +W E  K+R K+KE  +KK PGCS +
Sbjct: 594 KLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWI 653

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLL 594
           EV    + F   DKSHP+   IY+ +
Sbjct: 654 EVGKRIHPFVVEDKSHPQADMIYECM 679



 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 159/502 (31%), Positives = 269/502 (53%), Gaps = 32/502 (6%)

Query: 56  QTQILYDKIISLSRGNEIE------NL---------------SLQNP-QVYLYN-FIIQC 92
           Q ++++ KI+SL   N I       NL               +++NP  + L+N  +  C
Sbjct: 21  QGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 80

Query: 93  LSNANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
             N   +E + ++  +L    L P+ +T P VLKAC     +  G+ VH + +K+    +
Sbjct: 81  TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 140

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
           V V ++ + +YA C + +   KLF        +RD+ SW  +I  Y +   P +A+  F 
Sbjct: 141 VVVMSSAVGMYAKCNVFEDAIKLF----DEMPERDVASWNNVISCYYQDGQPEKALELFE 196

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
           +M  +  +PD + L  V+S+C++L DL  G +IH  +  + F L  D F+ +AL+DMY K
Sbjct: 197 EMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL--DGFVSSALVDMYGK 254

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           CG +  A++VF+++  KNVVSWNSMIAG + +G  K  +++FRRM   G++P   TL  +
Sbjct: 255 CGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSI 314

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L +C+    L+LGK++H Y+ +N +  D F+ ++L+D+Y KCG I  A  VF++M   +V
Sbjct: 315 LMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNV 374

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            S+  MI G    G   +AL IF++M + G++PD +TF  VL ACS   ++E+G K   +
Sbjct: 375 VSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG-KEIHN 433

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
                 L+      G ++D++ + G + EAL +   +P   D   W +++ A   H +  
Sbjct: 434 FIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQAF 492

Query: 512 LAEIVMENLVRFEPEGDGAYIL 533
            A  + E + + + + D    L
Sbjct: 493 EALKLFEKMQQSDAKPDKVTFL 514



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 147/511 (28%), Positives = 240/511 (46%), Gaps = 71/511 (13%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           +T  L  +LK C  S+ L+ G+ +H   +   L +N+ +  +L+ LY  C L ++   +F
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSK 234
              ++P    D+  W  L+ A  K     E +  F  +     L+PD      VL ACS 
Sbjct: 62  QTIENP---LDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSG 118

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           LG +  G  +H ++  + F +  DV + ++ + MY KC     A K+FDEMP ++V SWN
Sbjct: 119 LGRVGYGKMVHTHVIKSGFAM--DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWN 176

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           ++I+     GQ ++AL++F  M+  G KPD  TL  V++SCA +  LE GK +H  L ++
Sbjct: 177 NVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRS 236

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
               DGF+ +ALVDMY KCG ++ A  VF  ++ ++V S+ +MI G ++ G +   +++F
Sbjct: 237 GFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELF 296

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEG----------------------------C 446
             M + GI P   T   +L ACS +  ++ G                            C
Sbjct: 297 RRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKC 356

Query: 447 KHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALL 501
            +      V+   P+T    +  M+  + + G   EAL +   M    + PDA  + ++L
Sbjct: 357 GNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVL 416

Query: 502 GACK---------------IHAKVELAEIVMENLVRFE----------------PEGD-G 529
            AC                I +K+E+ E+VM  L+                   PE D  
Sbjct: 417 PACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFV 476

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           ++  M   Y S  +  EALKL +KM++   K
Sbjct: 477 SWTSMIAAYGSHGQAFEALKLFEKMQQSDAK 507


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/603 (35%), Positives = 320/603 (53%), Gaps = 99/603 (16%)

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           +P  A  LY+ ML   L  + YT P +++AC   +S    +QVH + +K    S+VYV N
Sbjct: 193 SPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRN 252

Query: 157 TLMRLYAVCGLIKAVHKLFH-----------------------------FRQHPQA---- 183
           TL+  ++VC  +    ++F+                             + Q P+     
Sbjct: 253 TLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIA 312

Query: 184 -------------------------QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
                                    ++D+V+W+ LI  + + +   EAI +F  M +  +
Sbjct: 313 SNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGV 372

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIH----RYITDNHFNLSPDVFIHNALIDMYLKCGN 274
             D ++ V  LSAC+ L  +++G  IH    +  T+++ NL       NALI MY KCG+
Sbjct: 373 MVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINL------QNALIYMYSKCGD 426

Query: 275 IPSARKVFDE-------------------------------MPVKNVVSWNSMIAGLTHR 303
           I  ARK+FDE                               MP K+VVSW+SMI+G    
Sbjct: 427 IMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQN 486

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
             F E L +F+ MQ  G KPD+ TLV V+++CA +  LE GKWVH Y+ +N +  +  +G
Sbjct: 487 DLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILG 546

Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423
             L+DMY KCG ++ A  VF  M  + + ++ A+I+GLA++G    +LD+FS M +  + 
Sbjct: 547 TTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVT 606

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           P+E+TF+GVL AC H GLV+EG  HF  M   + +QP  +HYGCMVDL GRAG ++EA +
Sbjct: 607 PNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEE 666

Query: 484 LIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543
           L+  MP+ PD   WGALLGACK H   E+   V   L+  +P+ DG ++L++NIY+SK +
Sbjct: 667 LLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGK 726

Query: 544 WKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603
           W + L++R  M + +V K PGCS++E  G  +EF  GDK+HP    I  +L E+  + K 
Sbjct: 727 WDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKL 786

Query: 604 HGY 606
            GY
Sbjct: 787 EGY 789



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 185/435 (42%), Gaps = 59/435 (13%)

Query: 158 LMRLYAVCGLIKAVHKLFHF-RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
           L++L A     ++V+K F    ++PQA    +      +AY++ + P  A   +  M   
Sbjct: 148 LLKLMAPSRKSRSVNKGFLLLMRYPQANTWKMPAKASRRAYIQTNSPHFAFTLYKSMLSN 207

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            L  D     +++ ACS         ++H ++    F+   DV++ N LI+ +  C N+ 
Sbjct: 208 YLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD--SDVYVRNTLINCFSVCSNMT 265

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A +VF+E  V + VSWNS++AG    G  +EA  I+ +M      P+   +        
Sbjct: 266 DACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM------PERSIIA------- 312

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
                                      N+++ ++   G + +A  +F  M  +D+ +++A
Sbjct: 313 --------------------------SNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSA 346

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I     +    +A+  F  M ++G+  DEV  V  LSAC++  +V  G      +    
Sbjct: 347 LIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG-----KLIHSL 401

Query: 457 NLQPQTEHY----GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
           +L+  TE Y      ++ ++ + G I  A  L     L+ D   W +++        V+ 
Sbjct: 402 SLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLL-DLISWNSMISGYLKCNLVDN 460

Query: 513 AEIVMENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKVK--KTPGCSLVE 569
           A+ + +++    PE D  ++  M + Y+  + + E L L ++M+    K  +T   S++ 
Sbjct: 461 AKAIFDSM----PEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVIS 516

Query: 570 VYGEFYEFRKGDKSH 584
                    +G   H
Sbjct: 517 ACARLAALEQGKWVH 531


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/536 (38%), Positives = 319/536 (59%), Gaps = 16/536 (2%)

Query: 82   QVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
             V+ +N +I  L+   + +EA+  +  +   GL+P   + P  +K+C     L  G+  H
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 2038

Query: 141  AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              +      ++++V + L+ +Y+ CG +K    LF   + P   R++VSWT++I  YV+ 
Sbjct: 2039 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFD--EIPL--RNVVSWTSMITGYVQN 2094

Query: 201  DYPTEAILSFFDMCQA--------NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
            +    A+L F D  +         N+  D +++V VLSACS++    +   +H ++    
Sbjct: 2095 EQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKG 2154

Query: 253  FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
            F+ S  + + N L+D Y KCG    ++KVFD M  K+ +SWNSMIA     G   EAL++
Sbjct: 2155 FDGS--IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEV 2212

Query: 313  FRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
            F  M + +G++ +  TL  VL +CA+ G L  GK +H  + K  +  +  +G +++DMY 
Sbjct: 2213 FHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYC 2272

Query: 372  KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
            KCGR++ A   F  MK ++V S+TAM+ G  +HG+A +ALDIF +M + G++P+ +TFV 
Sbjct: 2273 KCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVS 2332

Query: 432  VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
            VL+ACSHAGLVEEG   F  M   Y+++P  EHYGCMVDLFGRAG + EA +LIK M + 
Sbjct: 2333 VLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMK 2392

Query: 492  PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
            PD  VWG+LLGAC+IH  V+L EI  + L   +P+  G Y+L++N+Y+   RW +  ++R
Sbjct: 2393 PDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMR 2452

Query: 552  KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              MK R++ K PG SLVE+ G  + F  GDK HP    IYK L+++  + +  GY+
Sbjct: 2453 MLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYV 2508



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 131/398 (32%), Positives = 212/398 (53%), Gaps = 40/398 (10%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           ++L+ C   + LR   Q+HA  +++ L ++  +   L+ LY+  G I     LF+  Q+P
Sbjct: 32  FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
                  +W  +I+A        +A++ + +M    +  D      V+ AC+    + LG
Sbjct: 89  CT----FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG 144

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCG---------------------------- 273
             +H  +    +  S DVF+ N LID Y KCG                            
Sbjct: 145 KVVHGSLI--KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLI 202

Query: 274 ---NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
              ++  AR++FDE+P KNVVSW +MI G     Q +EAL++F+RMQ   + P+++T+V 
Sbjct: 203 SCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVS 262

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           ++ +C  +G L LG+ +H Y  KN I    ++G AL+DMY+KCG I  A  VF +M  + 
Sbjct: 263 LIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKS 322

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           + ++ +MI  L +HG   +AL++FSEM +V ++PD +TF+GVL AC H   V+EGC +F 
Sbjct: 323 LPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFT 382

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
            M++ Y + P  EHY CM +L+ R+  + EA    K +
Sbjct: 383 RMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 198/387 (51%), Gaps = 43/387 (11%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIEN-----LSLQNPQVY 84
           L++ K+   L+Q HA II++G      Q+L  K+I L S    I         +QNP  +
Sbjct: 34  LQNCKNFKHLRQIHAKIIRSG--LSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTF 91

Query: 85  LYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            +N II+  + N    +A+ LY+ M+ +G+  + +T P+V+KAC    S+ +G+ VH   
Sbjct: 92  TWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL 151

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------------------------- 176
           +K     +V+V N L+  Y  CG  +   K+F                            
Sbjct: 152 IKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEAR 211

Query: 177 --FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
             F + P   +++VSWT +I  Y++   P EA+  F  M   N+ P+   +V ++ AC++
Sbjct: 212 RIFDEIP--SKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           +G L+LG  IH Y   N   +   V++  ALIDMY KCG+I  A +VF+ MP K++ +WN
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIG--VYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWN 327

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           SMI  L   G  +EAL++F  M+ + +KPD  T + VL +C +I  ++ G    T + ++
Sbjct: 328 SMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 387

Query: 355 H-INTDGFIGNALVDMYAKCGRIDQAF 380
           + I         + ++YA+   +D+AF
Sbjct: 388 YGIAPIPEHYECMTELYARSNNLDEAF 414



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 149/370 (40%), Gaps = 74/370 (20%)

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           LS D  +   LI +Y   G I  A  +F ++      +WN +I   T  G  ++AL +++
Sbjct: 55  LSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYK 114

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            M   G+  D FT   V+ +C N   ++LGK VH  L K   + D F+ N L+D Y KCG
Sbjct: 115 NMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCG 174

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK-----------------AW--------- 408
               A  VF  M+ R+V S+T +I GL   G                  +W         
Sbjct: 175 HTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIR 234

Query: 409 -----KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------------------ 445
                +AL++F  M    I P+E T V ++ AC+  G++  G                  
Sbjct: 235 NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYL 294

Query: 446 ----------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMPLV-- 491
                     C    D   V+   P+     +  M+   G  GL +EAL+L   M  V  
Sbjct: 295 GTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNV 354

Query: 492 -PDAFVWGALLGACKIHAK------VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
            PDA  +  +L AC +H K           +     +   PE    Y  MT +Y+  N  
Sbjct: 355 KPDAITFIGVLCAC-VHIKNVKEGCAYFTRMTQHYGIAPIPE---HYECMTELYARSNNL 410

Query: 545 KEALKLRKKM 554
            EA K  K++
Sbjct: 411 DEAFKSTKEV 420



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 99/193 (51%), Gaps = 5/193 (2%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N  P EA+ L++ M  + + PN YT+  ++KAC +   L +G+ +H Y++K  +   V
Sbjct: 233 IRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGV 292

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           Y+   L+ +Y+ CG IK   ++F        ++ L +W ++I +        EA+  F +
Sbjct: 293 YLGTALIDMYSKCGSIKDAIEVF----ETMPRKSLPTWNSMITSLGVHGLGQEALNLFSE 348

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M + N++PD +  + VL AC  + ++  G      +T  H+ ++P    +  + ++Y + 
Sbjct: 349 MERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMT-QHYGIAPIPEHYECMTELYARS 407

Query: 273 GNIPSARKVFDEM 285
            N+  A K   E+
Sbjct: 408 NNLDEAFKSTKEV 420


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/527 (37%), Positives = 315/527 (59%), Gaps = 43/527 (8%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKIISLS-RGNEIENL--------SLQNPQVYLYNFI 89
            L+  HA +IKTG   H T     K+I         + L        ++Q P + ++N +
Sbjct: 2   SLRMIHAQMIKTG--LHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTM 59

Query: 90  IQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
            +  + +++P+ A+ LY  M+  GLLPN YT P++LK+C +S++ R GQQ+H + +K   
Sbjct: 60  FRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY 119

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH-------------------PQAQR---- 185
             ++YV  +L+ +Y   G ++   K+F    H                     AQ+    
Sbjct: 120 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDE 179

Query: 186 ----DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
               D+VSW  +I  Y +     EA+  F DM + N+RPD   +V V+SAC++ G + LG
Sbjct: 180 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 239

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            ++H +I D+ F    ++ I NALID+Y KCG + +A  +F+ +  K+V+SWN++I G T
Sbjct: 240 RQVHLWIDDHGFG--SNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYT 297

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK--NHINTD 359
           H   +KEAL +F+ M   G  P+D T++ +L +CA++G +++G+W+H Y++K    +   
Sbjct: 298 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNA 357

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             +  +L+DMYAKCG I+ A  VF SM  R + S+ AMI G A+HGKA  A D+FS+M +
Sbjct: 358 SSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRK 417

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            GI+PD++TFVG+LSACSH+G+++ G   F  MS+ Y + P+ EHYGCM+DL G  GL +
Sbjct: 418 NGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFK 477

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           EA ++I++MP+ PD  +W +LL ACK+H  VEL E   +NL++ EPE
Sbjct: 478 EAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPE 524


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/612 (35%), Positives = 338/612 (55%), Gaps = 28/612 (4%)

Query: 6   TVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHA-FIIKTGSPQHQTQILYDKI 64
           T+ + + ++ I  F  LSLL Q P      S   L+Q H  F I +    H+   L  + 
Sbjct: 11  TINTNTNHSPI--FLLLSLLKQCP------STKTLQQIHTQFTIHS---IHKPNHLLSQS 59

Query: 65  ISL---SRGNEIENLSLQNPQVYLYNFIIQCLSNA---NPLEAIALYREMLIKGLLPNTY 118
           ISL   +    I +    +P  Y +N +++  +      PL  + LY +M    + PN +
Sbjct: 60  ISLKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPL-TLHLYHQMKTLNISPNNF 118

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T P+V  AC   + +R+ +  H    K  L ++ +  N+++ +Y  CG      K+F   
Sbjct: 119 TFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFD-- 176

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGD 237
                ++DLVSW +L+  Y K+ +  EA+  F  + + +   PD M LV VL AC +LGD
Sbjct: 177 --EITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGD 234

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L LG  +  ++ +    +  + +I +ALI MY KCG + S+R++FD MP ++ ++WN+ I
Sbjct: 235 LELGRWVEGFVVER--GMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAI 292

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
           +     G   EA+ +F  M+  G+ P+  TL  VL++CA+IG L+LGK +  Y     + 
Sbjct: 293 SAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQ 352

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            D F+  AL+DMYAKCG ++ A  VF  M  ++  S+ AMI  LA HGKA +AL +F  M
Sbjct: 353 HDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERM 412

Query: 418 SQVG--IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           S  G    P+++TFV +LSAC HAGLV+EG + F  MS ++ L P+ EHY CMVDL  RA
Sbjct: 413 SDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRA 472

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
           G + EA D+I+ MP  PD    GAL  AC+    V++ E V++ L+  +P   G YI+ +
Sbjct: 473 GHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISS 532

Query: 536 NIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
            IY + N W +A ++R  M+E  V KTPGCS +EV  +  EF  GD     ++++  ++D
Sbjct: 533 KIYENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIID 592

Query: 596 EIMHQSKNHGYI 607
            +  + K  GY+
Sbjct: 593 LLYEELKKEGYV 604


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/586 (34%), Positives = 331/586 (56%), Gaps = 14/586 (2%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTGSPQHQTQ-----ILYDKIISLSRGNEIENLSLQNPQ 82
           S    S +SV   +Q H +I+K+G  +  +        Y K   +    ++ +  +    
Sbjct: 202 SKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFD-EMTERD 260

Query: 83  VYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           V  +N II   +SN    + ++++ +ML  G+  +  T+  V   C  S+ + +G+ VH 
Sbjct: 261 VISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHC 320

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           + +K          NTL+ +Y+ CG + +   +F       + R +VS+T++I  Y +  
Sbjct: 321 FGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFR----EMSGRSVVSYTSMIAGYAREG 376

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
              EA+  F +M +  + PD   +  VL+ C++   L  G ++H +I +N  ++  D+F+
Sbjct: 377 LAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKEN--DMGFDIFV 434

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLG 320
            NAL+DMY KCG++  A  VF EM VK+++SWN++I G +      EAL +F  +     
Sbjct: 435 SNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKR 494

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
             PD+ T+ CVL +CA++   + G+ +H Y+ +N   +D  + N+LVDMYAKCG +  A 
Sbjct: 495 FSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAR 554

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            +F  +  +D+ S+T MI G  +HG   +A+ +F++M Q GIEPDE++FV +L ACSH+G
Sbjct: 555 LLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSG 614

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LV+EG + F  M     ++P  EHY C+VD+  R G + +A   I++MP+ PDA +WGAL
Sbjct: 615 LVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGAL 674

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           L  C+IH  V+LAE V E +   EPE  G Y+LM NIY+   +W+E  +LRK++ +R ++
Sbjct: 675 LCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLR 734

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           K PGCS +E+ G    F  GD S+P+T +I   L  +  +    GY
Sbjct: 735 KNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGY 780



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 141/493 (28%), Positives = 244/493 (49%), Gaps = 20/493 (4%)

Query: 22  LSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNP 81
           L L   S  L+  K V    + + F++ + +   +  ++Y     L   + + +  ++  
Sbjct: 101 LQLCADSKSLKDGKEVDNFIRGNGFVLDS-NLGSKLALMYTNCGDLKEASRVFD-QVKIE 158

Query: 82  QVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           +   +N ++  L+ +     +I L+++M+  G+  ++YT   V K+    +S+  G+Q+H
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLH 218

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            Y +K+       V N+L+  Y     + +  K+F        +RD++SW ++I  YV  
Sbjct: 219 GYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVF----DEMTERDVISWNSIINGYVSN 274

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               + +  F  M  + +  D   +V V + C+    +SLG  +H +     F+   D F
Sbjct: 275 GLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFS-REDRF 333

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
             N L+DMY KCG++ SA+ VF EM  ++VVS+ SMIAG    G   EA+ +F  M+  G
Sbjct: 334 C-NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           + PD +T+  VLN CA    L+ GK VH ++ +N +  D F+ NAL+DMYAKCG + +A 
Sbjct: 393 ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAE 452

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS-EMSQVGIEPDEVTFVGVLSACSHA 439
            VF  M+ +D+ S+  +I G + +  A +AL +F+  + +    PDE T   VL AC+  
Sbjct: 453 LVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASL 512

Query: 440 GLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAG---LIREALDLIKSMPLVPDAF 495
              ++G + H   M   Y       +   +VD++ + G   L R   D I S  LV    
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLARLLFDDITSKDLVS--- 567

Query: 496 VWGALLGACKIHA 508
            W  ++    +H 
Sbjct: 568 -WTVMIAGYGMHG 579



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 146/317 (46%), Gaps = 35/317 (11%)

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D   L  VL  C+    L  G ++  +I  N F L  ++    AL  MY  CG++  A +
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLAL--MYTNCGDLKEASR 150

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VFD++ ++  + WN ++  L   G F  ++ +F++M   G++ D +T  CV  S +++  
Sbjct: 151 VFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 210

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           +  G+ +H Y+ K+       +GN+LV  Y K  R+D A  VF  M  RDV S+ ++I G
Sbjct: 211 VNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIING 270

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG--------------- 445
              +G A K L +F +M   GIE D  T V V + C+ + L+  G               
Sbjct: 271 YVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRE 330

Query: 446 ---CKHFLDM-SRVYNLQP-----------QTEHYGCMVDLFGRAGLIREALDLIKSMP- 489
              C   LDM S+  +L                 Y  M+  + R GL  EA+ L + M  
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390

Query: 490 --LVPDAFVWGALLGAC 504
             + PD +   A+L  C
Sbjct: 391 EGISPDVYTVTAVLNCC 407


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/578 (37%), Positives = 322/578 (55%), Gaps = 15/578 (2%)

Query: 37  VGQLKQFHAFIIKTGSPQH-----QTQILYDKIISLSR-GNEIENLSLQNPQVYLYNFII 90
           VG L Q H   +KT           T  +Y K  +LS   N++ N SL N  +  YN II
Sbjct: 228 VGAL-QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFN-SLPNHNLQSYNAII 285

Query: 91  QCLSNANP-LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
              + ++  +EA+ ++R +   GL  +  +L    +AC   +    G QVH  SMK+   
Sbjct: 286 VGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQ 345

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
           SN+ V N ++ +Y  CG +     +F         RD VSW  +I A+ +     + +  
Sbjct: 346 SNICVANAILDMYGKCGALVEACLVFE----EMVSRDAVSWNAIIAAHEQNGNEEKTLSL 401

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F  M Q+ + PD      VL AC+    L+ G++IH  I  +   L  D F+  ALIDMY
Sbjct: 402 FVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGL--DSFVGIALIDMY 459

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            KCG +  A K+ D +  + VVSWN++I+G + + Q +EA   F +M  +G+ PD+FT  
Sbjct: 460 SKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYA 519

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            +L++CAN+  +ELGK +H  + K  + +D +I + LVDMY+KCG +     +F     R
Sbjct: 520 TILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNR 579

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           D  ++ AM+ G A HG   +AL IF  M    ++P+  TF+ VL AC H GLVE+G  +F
Sbjct: 580 DFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYF 639

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
             M   Y L PQ EHY C+VD+ GR+G + +AL+LI+ MP   DA +W  LL  CKIH  
Sbjct: 640 HSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGN 699

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           VE+AE    ++++ EPE   AY+L++NIY++   W E  KLRK M+   +KK PGCS +E
Sbjct: 700 VEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIE 759

Query: 570 VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +  E + F  GDK+HP++ EIY+ LD +  + K  GY+
Sbjct: 760 IKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYM 797



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 143/346 (41%), Gaps = 75/346 (21%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +   CS    L  G + H  +    F   P VF+ N LI MY+KC ++  A KVFD MP 
Sbjct: 48  IFQECSDRKALCPGKQAHARMILTEFK--PTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQ 105

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQG---------------LGLKPDDFTLVCVL 332
           ++ VSWN+M+ G   RG    A  +F  M G               +G   D  T   VL
Sbjct: 106 RDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVL 165

Query: 333 NSCANI-------------------------------------------GWLELGK---- 345
            SC+++                                           G LEL K    
Sbjct: 166 KSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQK 225

Query: 346 ------WVHTYLDKNHINTDGFIGNALVDMYAKCGRI-DQAFGVFRSMKCRDVYSYTAMI 398
                  +H +  K    TD  IG A +DMY KC  + D +  +F S+   ++ SY A+I
Sbjct: 226 AGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAII 285

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYN 457
           VG A   K  +AL +F  + + G+  DEV+  G   AC+      EG + H L M  +  
Sbjct: 286 VGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSL-- 343

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
            Q        ++D++G+ G + EA  + + M +  DA  W A++ A
Sbjct: 344 CQSNICVANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAA 388


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/613 (33%), Positives = 334/613 (54%), Gaps = 49/613 (7%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL----SRGNEIENL-------SLQ 79
           L+  +S+  L Q HA ++  G P     ++   + S      R  ++           + 
Sbjct: 10  LQQCRSIRHLDQLHAHLLAHG-PSAVASVVPQLVASYCALSGRAGDVALCHARRMFDRVP 68

Query: 80  NPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +P  + YN +I+  SN+  P EA+ L+R++L +G+LPN +TLP+VLKAC ++++      
Sbjct: 69  DPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHALA 128

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
            H  ++K   +  V+V N L+   A  G ++   +LF         R++VSW T+I    
Sbjct: 129 THGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLF---AEMAPHRNVVSWNTMIGGCA 185

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +    +EA   F +M +  +  D    V +L  CSK G+L +G  +H ++  +   +  D
Sbjct: 186 QAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRV--D 243

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG-------------- 304
           + + NAL+DMY KCG++  A + FD MP+KNVVSW SM+  L   G              
Sbjct: 244 LILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPE 303

Query: 305 -----------------QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
                            +F E L ++ RM+ LGL PD+ TL  VL+     G L  G+ +
Sbjct: 304 RNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMI 363

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H Y+  +  +    + N+L+DMYA+CG++D +  +F  M  ++  S+  +I  LA+HG+A
Sbjct: 364 HCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRA 423

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            +A+  F  M      PDE+TFVG+LSACSH GL+E+G  +F  M  +YN++P+ EHY C
Sbjct: 424 QEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYAC 483

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           MVDL GR G + +A+DLIK MP+ PD  VWGAL+GAC+IH  VE+ ++ ++ L+  E   
Sbjct: 484 MVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELEGIN 543

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
            G ++L++N+     +W++  +LRK M++R  KK  G S +E+    +EF   D  H  +
Sbjct: 544 GGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINNSIHEFGVEDIRHESS 603

Query: 588 LEIYKLLDEIMHQ 600
            +IY  +D++ + 
Sbjct: 604 SQIYAAVDQLAYH 616


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/533 (39%), Positives = 298/533 (55%), Gaps = 68/533 (12%)

Query: 138 QVHAYSMKTALLSNVYVFNTLMR-LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           Q+HA  +KT+L  N +V   L+R L+A       ++    F + P    D   W T+I+A
Sbjct: 21  QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSP--DTFIWNTMIRA 78

Query: 197 YVKMDYPTEAILSFFDMCQANLRP-DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           Y+    P E++  FF M      P D   L +V+ AC +L D   G K+H  +      L
Sbjct: 79  YLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVL--KIGL 136

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKV-------------------------------FDE 284
             D+F+  ALI+MY K G+I  AR +                               FD 
Sbjct: 137 GSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDR 196

Query: 285 MPVKNVVSWNSMIAGLTHRG-------------------------------QFKEALDIF 313
           MP +++VSWN+MI G    G                               Q  EAL +F
Sbjct: 197 MPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLF 256

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             MQ   + PD  T+V VL++C ++G L +GK +H  +++N I  D  +G +LVDMYAKC
Sbjct: 257 HEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKC 316

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G ID +  VF  M  RDV++++AMI+GLA HG    ALD FS+M    I+P++VTF+GVL
Sbjct: 317 GDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVL 376

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SACSH GLV+EG  +F  MS+VY++ P+ EHYGC+VD+ GRAG ++EA++LIKSMP  PD
Sbjct: 377 SACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPD 436

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
           A VW ALLGAC+I+  VE+AE    NL+  EP  DG Y+L++NIYS    W + + +R+ 
Sbjct: 437 AIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRM 496

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           MK   ++K PG S +EV    +EF  GD+SHP++ +I ++L EI  + K +GY
Sbjct: 497 MKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGY 549



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 208/424 (49%), Gaps = 70/424 (16%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQI--LYDKIISLSRGNEIENL-----SLQNPQV 83
           L+++  + Q+ Q HA IIKT    +   +  L  ++ + S  N++         + +P  
Sbjct: 10  LQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDT 69

Query: 84  YLYNFIIQC-LSNANPLEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQQVHA 141
           +++N +I+  L++ NP E+++L+ +M  +  +P ++Y+L  V++AC + +    GQ++H 
Sbjct: 70  FIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHT 129

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ------------------- 182
             +K  L S+++V   L+ +YA  G I+    +     HP                    
Sbjct: 130 QVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINL 189

Query: 183 --------AQRDLVSWTTLIQ-------------------------------AYVKMDYP 203
                    +RDLVSW T+I                                AY K    
Sbjct: 190 AHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQS 249

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EA+  F +M  AN+ PD + +V VLSAC  +G L +G  IH  I  N   +  D+ +  
Sbjct: 250 NEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEI--DLKLGT 307

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           +L+DMY KCG+I ++ +VF+ M  ++V +W++MI GL + G  + ALD F +M    +KP
Sbjct: 308 SLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKP 367

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGV 382
           +D T + VL++C++IG ++ G    T + K + ++        +VD+  + GR+ +A  +
Sbjct: 368 NDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMEL 427

Query: 383 FRSM 386
            +SM
Sbjct: 428 IKSM 431


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/529 (36%), Positives = 312/529 (58%), Gaps = 8/529 (1%)

Query: 80  NPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +P V+L+N I++C S       AI +Y  M +  + P+ ++ P VLKAC    +L +G++
Sbjct: 135 DPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRR 194

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           VH    +    S+V+V N L+ LYA CG I   + +F         R +VSWT++I  Y 
Sbjct: 195 VHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFG----RLVDRTIVSWTSIISGYA 250

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +   P EA+  F +M + N+RPD + LV VL A + + DL  G  IH  +         D
Sbjct: 251 QNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFD 310

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           + I  +L  +Y KCG++  AR  F+++   +++ WN+MI+G    G  +EA+++FR M+ 
Sbjct: 311 LLI--SLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKS 368

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
             ++PD  T+   + +CA IG LEL +W+  Y+  +    D  +  +L+D YAKCG +D 
Sbjct: 369 KNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDM 428

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  VF  +  +DV  ++AM+VG  +HG+  +++ +F  M Q G+ P++VTFVG+L+AC +
Sbjct: 429 ARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKN 488

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           +GLVEEG   F  M R Y ++P+ +HY C+VDL GRAG +  A + + +MP+ P   VWG
Sbjct: 489 SGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWG 547

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           ALL ACKIH  V L E   E L   +P   G Y+ ++N+Y+S   W    K+R  M+E+ 
Sbjct: 548 ALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKG 607

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + K  G S++E+ G+   F+ GDK+HP++ EI++ ++++  + K  G++
Sbjct: 608 LTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFV 656



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 169/346 (48%), Gaps = 7/346 (2%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           LY K   + R N +    +    V   + I     N  P+EA+ ++ EM    + P+   
Sbjct: 217 LYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIA 276

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           L  VL+A    + L  G+ +H   +K  L     +  +L  LYA CG +      F+  +
Sbjct: 277 LVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVE 336

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
           +P     L+ W  +I  YVK  Y  EAI  F  M   N+RPD + +   ++AC+++G L 
Sbjct: 337 NPS----LIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLE 392

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           L   +  YI+ + F    DV ++ +LID Y KCG++  AR VFD +P K+VV W++M+ G
Sbjct: 393 LARWMDEYISMSEFR--NDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVG 450

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               GQ +E++ +F  M+  G+ P+D T V +L +C N G +E G  +   +    I   
Sbjct: 451 YGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPR 510

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIH 404
                 +VD+  + G +D+A+    +M     V  + A++    IH
Sbjct: 511 HQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIH 556



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 33/302 (10%)

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
           F+   L++     G +  ARK+FD+ P  +V  WN+++   +  G F  A++++ RMQ  
Sbjct: 108 FLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVA 167

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            + PD F+  CVL +C+ +  LE+G+ VH  + ++   +D F+ N LV +YAKCG I +A
Sbjct: 168 CVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRA 227

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             VF  +  R + S+T++I G A +G+  +AL IFSEM +  + PD +  V VL A +  
Sbjct: 228 NAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDV 287

Query: 440 GLVEEG----------------------------CKHFLDMSRVYNL--QPQTEHYGCMV 469
             +E G                            C H +     +N    P    +  M+
Sbjct: 288 EDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMI 347

Query: 470 DLFGRAGLIREALD---LIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
             + + G   EA++   L+KS  + PD+    + + AC     +ELA  + E +   E  
Sbjct: 348 SGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFR 407

Query: 527 GD 528
            D
Sbjct: 408 ND 409



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
           GF+   LV+  +  G +  A  +F      DV+ + A++   + HG    A+++++ M  
Sbjct: 107 GFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQV 166

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             + PD  +F  VL ACS    +E G        RV+    Q   +G   D+F + GL+
Sbjct: 167 ACVSPDGFSFPCVLKACSALPALEMG-------RRVHG---QIFRHGFESDVFVQNGLV 215


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/612 (35%), Positives = 338/612 (55%), Gaps = 28/612 (4%)

Query: 6   TVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHA-FIIKTGSPQHQTQILYDKI 64
           T+ + + ++ I  F  LSLL Q P      S   L+Q H  F I +    H+   L  + 
Sbjct: 11  TINTNTNHSPI--FLLLSLLKQCP------STKTLQQIHTQFTIHS---IHKPNHLLSQS 59

Query: 65  ISL---SRGNEIENLSLQNPQVYLYNFIIQCLSNA---NPLEAIALYREMLIKGLLPNTY 118
           ISL   +    I +    +P  Y +N +++  +      PL  + LY +M    + PN +
Sbjct: 60  ISLKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPL-TLHLYHQMKTLNISPNNF 118

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T P+V  AC   + +R+ +  H    K  L ++ +  N+++ +Y  CG      K+F   
Sbjct: 119 TFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFD-- 176

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGD 237
                ++DLVSW +L+  Y K+ +  EA+  F  + + +   PD M LV VL AC +LGD
Sbjct: 177 --EITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGD 234

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L LG  +  ++ +    +  + +I +ALI MY KCG + S+R++FD MP ++ ++WN+ I
Sbjct: 235 LELGRWVEGFVVER--GMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAI 292

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
           +     G   EA+ +F  M+  G+ P+  TL  VL++CA+IG L+LGK +  Y     + 
Sbjct: 293 SAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQ 352

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            D F+  AL+DMYAKCG ++ A  VF  M  ++  S+ AMI  LA HGKA +AL +F  M
Sbjct: 353 HDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERM 412

Query: 418 SQVG--IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           S  G    P+++TFV +LSAC HAGLV+EG + F  MS ++ L P+ EHY CMVDL  RA
Sbjct: 413 SDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRA 472

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
           G + EA D+I+ MP  PD    GAL  AC+    V++ E V++ L+  +P   G YI+ +
Sbjct: 473 GHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISS 532

Query: 536 NIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
            IY + N W +A ++R  M+E  V KTPGCS +EV  +  EF  GD     ++++  ++D
Sbjct: 533 KIYENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIID 592

Query: 596 EIMHQSKNHGYI 607
            +  + K  GY+
Sbjct: 593 LLYEELKKEGYL 604


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/546 (36%), Positives = 306/546 (56%), Gaps = 44/546 (8%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+  +  M     + N Y+    L AC + + L++G Q+H    K+    +V++ + L+
Sbjct: 139 EALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLI 198

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
             Y+ CGL+    ++F   +    ++++VSW  LI  Y +     EA+ +F  M +   +
Sbjct: 199 DFYSKCGLVGCARRVFDGME----EKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFK 254

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           PD + L  V+SAC+ L     G++IH R +  + F    D+ + NAL+DMY KCG +  A
Sbjct: 255 PDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFR--NDLILGNALVDMYAKCGRVNEA 312

Query: 279 RKVFDEMPVKN-------------------------------VVSWNSMIAGLTHRGQFK 307
           R VFD MPV+N                               +VSWN++IAG T  G+ +
Sbjct: 313 RCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENE 372

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI------NTDGF 361
           EAL +FR ++   + P  +T   +LN+ AN+  LELG+  H+++ K+          D F
Sbjct: 373 EALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIF 432

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           +GN+L+DMY KCG +++   VF +M  +D  S+  MI+G A +G   +AL++F +M + G
Sbjct: 433 VGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESG 492

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
            +PD VT +G L ACSHAGLVEEG ++F  M++ + L P  +HY CMVDL GRAG + EA
Sbjct: 493 EKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEA 552

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
            DLI+SMP  PDA VW +LL ACK+H  + L + V E +   +P   G Y+L+ N+YS  
Sbjct: 553 KDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSEL 612

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQS 601
            RW +A+ +RK M+ R V K PGCS +++    + F   DK HP+  EIY +L  +    
Sbjct: 613 GRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSILKLLTKHM 672

Query: 602 KNHGYI 607
           +  GY+
Sbjct: 673 RQAGYV 678



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 144/487 (29%), Positives = 222/487 (45%), Gaps = 51/487 (10%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
              ++     +L  C + +S R  + VH   ++T     V++ N L+ +Y  CG +    
Sbjct: 20  FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79

Query: 173 KLFH-----------------------------FRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           K+F                              F   P+  +D  SW ++I  + + D  
Sbjct: 80  KVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPE--KDQCSWNSMIAGFAQHDRF 137

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EA+  F  M + +   +       LSACS+L DL LG +IH  I+ + ++L  DVF+ +
Sbjct: 138 EEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSL--DVFMGS 195

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
            LID Y KCG +  AR+VFD M  KNVVSWN +I      G   EAL+ F RM  LG KP
Sbjct: 196 GLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKP 255

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           D+ TL  V+++CA +   + G  +H  + K +    D  +GNALVDMYAKCGR+++A  V
Sbjct: 256 DEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCV 315

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F  M  R+  S T M+ G A       A  +F+ + Q     D V++  +++  +  G  
Sbjct: 316 FDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQ----KDIVSWNALIAGYTQNGEN 371

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG---LIREALDLIKSMPL------VPD 493
           EE    F  + R  ++ P    +G +++         L R+A   +            PD
Sbjct: 372 EEALGLFRMLKR-ESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPD 430

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
            FV  +L+        VE    V EN+V    +   ++  M   Y+      EAL+L +K
Sbjct: 431 IFVGNSLIDMYMKCGSVEEGLRVFENMVE---KDHVSWNTMIIGYAQNGYGMEALELFQK 487

Query: 554 MKERKVK 560
           M E   K
Sbjct: 488 MLESGEK 494



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 171/366 (46%), Gaps = 43/366 (11%)

Query: 78  LQNPQVYLYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           ++   V  +N +I C     P +EA+  +  M   G  P+  TL  V+ AC    + + G
Sbjct: 217 MEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEG 276

Query: 137 QQVHAYSMKTALLSNVYVF-NTLMRLYAVCGLIKAVHKLFHFRQHPQA------------ 183
            Q+HA  +K+    N  +  N L+ +YA CG +     +F       A            
Sbjct: 277 VQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAK 336

Query: 184 ---------------QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV 228
                          Q+D+VSW  LI  Y +     EA+  F  + + ++ P       +
Sbjct: 337 SASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNL 396

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNL----SPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           L+A + L DL LG + H ++  + F       PD+F+ N+LIDMY+KCG++    +VF+ 
Sbjct: 397 LNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFEN 456

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           M  K+ VSWN+MI G    G   EAL++F++M   G KPD  T++  L +C++ G +E G
Sbjct: 457 MVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEG 516

Query: 345 KWVHTYLDKNHINTDGFIG-----NALVDMYAKCGRIDQAFGVFRSM-KCRDVYSYTAMI 398
           +     + K H    G +        +VD+  + G +++A  +  SM K  D   +++++
Sbjct: 517 RRYFFSMTKEH----GLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLL 572

Query: 399 VGLAIH 404
               +H
Sbjct: 573 SACKVH 578



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 173/373 (46%), Gaps = 48/373 (12%)

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNL--SP---DVFIHNALIDMYLKCGNIPSARKVFDE 284
           S  +KL DL + ++  R     H  L  +P   +VFI N LID+Y KCG +  ARKVFD 
Sbjct: 25  SPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDR 84

Query: 285 M-------------------------------PVKNVVSWNSMIAGLTHRGQFKEALDIF 313
           M                               P K+  SWNSMIAG     +F+EALD F
Sbjct: 85  MSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWF 144

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
            RM       +D++    L++C+ +  L+LG  +H  + K+  + D F+G+ L+D Y+KC
Sbjct: 145 VRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKC 204

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G +  A  VF  M+ ++V S+  +I     +G A +AL+ F  M+++G +PDEVT   V+
Sbjct: 205 GLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVV 264

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP---- 489
           SAC+     +EG +    + +    +        +VD++ + G + EA  +   MP    
Sbjct: 265 SACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNA 324

Query: 490 LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549
           +     V G    A    A+   A I  +++V +     G        Y+     +EAL 
Sbjct: 325 VSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAG--------YTQNGENEEALG 376

Query: 550 LRKKMKERKVKKT 562
           L + +K   V  T
Sbjct: 377 LFRMLKRESVCPT 389



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 115/236 (48%), Gaps = 14/236 (5%)

Query: 77  SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           +++   +  +N +I   + N    EA+ L+R +  + + P  YT   +L A      L +
Sbjct: 349 TIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLEL 408

Query: 136 GQQVHAYSMKTALL------SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
           G+Q H++ +K           +++V N+L+ +Y  CG ++   ++F        ++D VS
Sbjct: 409 GRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVF----ENMVEKDHVS 464

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W T+I  Y +  Y  EA+  F  M ++  +PD + ++  L ACS  G +  G +    +T
Sbjct: 465 WNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMT 524

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGL-THR 303
             H  L P    +  ++D+  + G +  A+ + + MP + + V W+S+++    HR
Sbjct: 525 KEH-GLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHR 579


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/580 (34%), Positives = 338/580 (58%), Gaps = 44/580 (7%)

Query: 31  LESSKSVGQLKQFHAFIIKT---GSPQHQTQILYDKIISLSRGNEIENLSLQ--NPQVYL 85
           ++S  S+  +K+ HA +I+T    +P+  + ++    +S S  N+     +Q   P + +
Sbjct: 64  IKSGFSIKSIKEQHAHLIRTHHHKNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLI 123

Query: 86  YNFIIQCLSNA-NPLEAIALYREMLI-KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           +N++I+ LS + NP EAI +Y +++  +G+L +  T  Y+ KAC + + +  GQ  H   
Sbjct: 124 FNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQV 183

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K    S +++ N+L+R+Y   G +    K+F         RDLVSW +LI  Y + +  
Sbjct: 184 LKLGFGSYLFIENSLIRMYGYFGELGYAQKVFD----KMDDRDLVSWNSLICGYSQCNRF 239

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            E +  F  M +AN+  D + +V V+ ACS L +  +   + +YI D H ++  DV++ N
Sbjct: 240 KEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDI--DVYLGN 297

Query: 264 ALIDMYLK-------------------------------CGNIPSARKVFDEMPVKNVVS 292
           +LIDMY +                                G++ +A+K+F+EMP++NV+S
Sbjct: 298 SLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVIS 357

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W  MI+G     Q  +AL +F+ M    +KPD+ T+  VL++C+++G L+ G+ VH Y+ 
Sbjct: 358 WTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMC 417

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           ++ I +D ++GNAL+DMY KCG +D+A  VF  MK +D  S+T+MI+GLA++G      +
Sbjct: 418 RHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFE 477

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           +FS+M + G++P   +F+G+L AC+HAGLV++G ++F  M  VY L+P+ +HYGC+VDL 
Sbjct: 478 LFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLL 537

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
            R+G +  A + IK MP+VPD  +W  LL ACK+H  + LAEI    L+  +P   G Y+
Sbjct: 538 SRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNSGNYV 597

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           L++N Y+  +RW +A ++R  M    V+K    S +EV G
Sbjct: 598 LLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWSSIEVIG 637



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 217/443 (48%), Gaps = 47/443 (10%)

Query: 107 EMLIKGLLPNTYTLPYVLKACWQ----SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLY 162
           +M ++  +   +T     + C Q      S++  ++ HA+ ++T    N    + +++ Y
Sbjct: 40  QMKLRRPISRLFTSSSTTRKCQQIIKSGFSIKSIKEQHAHLIRTHHHKNPKSMSNVIKSY 99

Query: 163 AVCG--LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD-MCQANLR 219
           A+    L KA    F F Q    Q  L+ +  LI+   + + P EAI+ + D M    + 
Sbjct: 100 ALSRSHLNKAN---FAFIQ--IGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGIL 154

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            D +  + +  ACS++ D+  G   H  +    F     +FI N+LI MY   G +  A+
Sbjct: 155 GDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFG--SYLFIENSLIRMYGYFGELGYAQ 212

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVFD+M  +++VSWNS+I G +   +FKE LD+F  M+   +  D  T+V V+ +C+ + 
Sbjct: 213 KVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLC 272

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
              +   +  Y++  H++ D ++GN+L+DMY + G +D A  VF  M+ +++ S+ AM+ 
Sbjct: 273 EDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLT 332

Query: 400 GLAIHGK-----------------AW--------------KALDIFSEMSQVGIEPDEVT 428
           G A  G                  +W               AL +F EM    ++PDE+T
Sbjct: 333 GYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEIT 392

Query: 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
              VLSACSH GL++ G      M R ++++        ++D++ + G++ +AL++   M
Sbjct: 393 VSSVLSACSHLGLLDTGQTVHEYMCR-HDIKSDVYVGNALIDMYCKCGVVDKALEVFHDM 451

Query: 489 PLVPDAFVWGALLGACKIHAKVE 511
               D+  W +++    ++  V+
Sbjct: 452 K-KKDSVSWTSMILGLAVNGFVD 473


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/598 (34%), Positives = 332/598 (55%), Gaps = 38/598 (6%)

Query: 31  LESSKSVGQLKQFHAFIIKTG-------SPQHQTQILYDKIISLSRGNEIENLSLQNPQV 83
           L +  +  +L Q  A I+  G       +P   T     ++  + R   + + + Q P  
Sbjct: 29  LRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACA--RLGGIRRARRVFDKTAQ-PNG 85

Query: 84  YLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
             +N + +  + AN  L+ + L+  M   G  PN +T P V+K+C  + + + G++VH  
Sbjct: 86  ATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCV 145

Query: 143 SMKTALLSNVYVFNTLMRLYAVCG--LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
             K    SN +V   L+ +Y++ G   +   +K+F         +++ +WT ++ A+V  
Sbjct: 146 VAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFA----EMRDKNVFAWTAIVAAHVAC 201

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
                A    FD+     + D ++  +V+S   +LGD+    ++   + D       DV 
Sbjct: 202 RDMVSA-RRLFDLAP---QRDVVLWNVVVSGYIELGDMVAARELFDRMPDR------DVM 251

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM---- 316
             N ++  Y   G + S  K+F+EMPV+NV SWN +I G    G FKEAL+ F+RM    
Sbjct: 252 SWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLV 311

Query: 317 QGLG-------LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           +G G       + P+D+T+V VL +C+ +G LE+GKWVH Y +      + F+GNAL+DM
Sbjct: 312 EGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDM 371

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           YAKCG I++A  VF  +  +D+ ++  +I GLA+HG    AL +F  M + G  PD VTF
Sbjct: 372 YAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTF 431

Query: 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
           VG+LSAC+H GLV  G  HF  M   Y++ PQ EHYGCMVDL GRAGLI +A+D+++ MP
Sbjct: 432 VGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMP 491

Query: 490 LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549
           + PDA +W ALLGAC+++  VE+AE+ ++ L+  EP   G +++++NIY    R ++  +
Sbjct: 492 MEPDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVAR 551

Query: 550 LRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           L+  M++   +K PGCS++       EF   D+ HP+T  IY+ L  +    ++HGY+
Sbjct: 552 LKVAMRDTGFRKVPGCSVIGCNDSMVEFYSLDERHPETDSIYRALQGLTILLRSHGYV 609


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/611 (33%), Positives = 329/611 (53%), Gaps = 49/611 (8%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL----------SLQNPQVYLYNF 88
            LKQ HA I+ + +    T  L  K+          +            + NP  +  N 
Sbjct: 31  HLKQIHAQILHSNTTPENTNTLLSKLALSICTLSSSSSSLHYALSVFSQIPNPHTHFSNQ 90

Query: 89  IIQCLSNAN-PLEAIALYREM-LIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           +++ LS ++ P + I LY  +  I     + ++ P +LKA  +  +   G ++H  + K 
Sbjct: 91  LLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLASKL 150

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
             + + ++   L+ +YA C  I     LF    HP    D V+W  +I  Y +  +  +A
Sbjct: 151 GFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHP----DAVAWNMIIDGYCQNGHYDDA 206

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F DM  ++++PD +IL  VLSAC   G+LS G  IH ++ DN + +  D  +  ALI
Sbjct: 207 LRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAI--DSHLQTALI 264

Query: 267 DMYLKCGNIPSARKV-------------------------------FDEMPVKNVVSWNS 295
           +MY  CG +  ARK+                               FD+M  +++V W++
Sbjct: 265 NMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSA 324

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           MI+G     Q +EAL +F  M      PD  T++ V+++C+++G L    W+HTY+D++ 
Sbjct: 325 MISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSG 384

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
                 + NAL+DMYAKCG + +A  VF +M  ++V S+++MI   A+HG A  A+ +F 
Sbjct: 385 FGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFR 444

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
            M +V IEP+ VTF+GVL AC HAGLVEEG K F  M   + + P  EHYGCMVDL+ RA
Sbjct: 445 RMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRA 504

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
             +R+A++LI++MP  P+  +WG+L+ AC++H + EL E   + L+  EP+ DGA ++++
Sbjct: 505 NFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLS 564

Query: 536 NIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           NIY+ + RW +   +RK M  + + K    S +E+  + + F   D+ H ++ EIY+ LD
Sbjct: 565 NIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLD 624

Query: 596 EIMHQSKNHGY 606
           E++ + K  GY
Sbjct: 625 EVVSKLKLVGY 635


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/507 (37%), Positives = 294/507 (57%), Gaps = 6/507 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L++ M   G+  +  +L  V  AC + +    G QVH  ++K+    +V V N ++
Sbjct: 321 EALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAIL 380

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY  C  +   + +F        QRD VSW  +I A  + +   + I    +M +  + 
Sbjct: 381 DLYGKCKALVEAYLVFQ----EMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGME 436

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD      VL AC+ L  L  G  +H     +   L  D F+ + ++DMY KCG I  A+
Sbjct: 437 PDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGL--DAFVSSTVVDMYCKCGMITEAQ 494

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           K+ D +  + +VSWNS+I+G +   Q +EA   F  M  +G+KPD FT   VL++CAN+ 
Sbjct: 495 KLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLA 554

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            +ELGK +H  + K  +  D +I + LVDMYAKCG +  +  +F   +  D  S+ AMI 
Sbjct: 555 TIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMIC 614

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G A+HG+ ++AL++F  M Q  + P+  TFV VL ACSH GL+++GC++F  M+  Y L+
Sbjct: 615 GYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLE 674

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           PQ EH+ CMVD+ GR+   +EAL  I+SMPL  DA +W  LL  CKI   VE+AE    N
Sbjct: 675 PQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASN 734

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           ++R +P+    YIL++N+Y+   +W +  + R+ M++ ++KK PGCS +EV  E + F  
Sbjct: 735 VLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLA 794

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           GDK HP++ E+Y++L+ ++ + K  GY
Sbjct: 795 GDKVHPRSREVYEMLNNLIVEMKLSGY 821



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 201/428 (46%), Gaps = 16/428 (3%)

Query: 103 ALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL-SNVYVFNTLMRL 161
           A +  ML+ G +P T+     +  C      R G   HA  +   +   +   +NT++  
Sbjct: 25  AAHARMLVSGFMPTTF-----VSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTA 79

Query: 162 YAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221
           YA  G   A   LF     P    D+VSW  L+  Y +     +++    +M +  + PD
Sbjct: 80  YAHAGDTGAAASLFGAMPDP----DVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPD 135

Query: 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
              L ++L AC  L DL+LG++IH         L  DV   +AL+DMY KC ++  A + 
Sbjct: 136 RTTLAVLLKACGGLEDLALGVQIHAVAVKT--GLEMDVRAGSALVDMYGKCRSLEDALRF 193

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           F  M  +N VSW + IAG     Q+   L++F +MQ LGL         V  SCA I  L
Sbjct: 194 FHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCL 253

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
              + +H +  KN  + D  +G A+VD+YAK   +  A   F S+    V +  AM+VGL
Sbjct: 254 STARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGL 313

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQP 460
              G   +AL +F  M++ GI  D V+  GV SAC+      +G + H L +   +++  
Sbjct: 314 VRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDV 373

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
              +   ++DL+G+   + EA  + + M    D+  W A++ A + +   E     +  +
Sbjct: 374 CVRN--AILDLYGKCKALVEAYLVFQEMEQ-RDSVSWNAIIAALEQNECYEDTIAYLNEM 430

Query: 521 VRFEPEGD 528
           +R+  E D
Sbjct: 431 LRYGMEPD 438



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 137/519 (26%), Positives = 239/519 (46%), Gaps = 49/519 (9%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           ++ +P V  +N ++          +++ L  EM  +G+ P+  TL  +LKAC   + L +
Sbjct: 95  AMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLAL 154

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G Q+HA ++KT L  +V   + L+ +Y  C  ++   + F    H   +R+ VSW   I 
Sbjct: 155 GVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFF----HGMGERNSVSWGAAIA 210

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
             V+ +  T  +  F  M +  L         V  +C+ +  LS   ++H +   N F  
Sbjct: 211 GCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKF-- 268

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
           S D  +  A++D+Y K  ++  AR+ F  +P   V + N+M+ GL   G   EAL +F+ 
Sbjct: 269 SADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQF 328

Query: 316 MQGLGLKPDDFTLVCVLNSCANI-GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           M   G+  D  +L  V ++CA + G+L+ G  VH    K+  + D  + NA++D+Y KC 
Sbjct: 329 MTRSGIGFDVVSLSGVFSACAEVKGYLQ-GLQVHCLAIKSGFDVDVCVRNAILDLYGKCK 387

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            + +A+ VF+ M+ RD  S+ A+I  L  +      +   +EM + G+EPD+ T+  VL 
Sbjct: 388 ALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLK 447

Query: 435 ACSHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL---DLIKSMPL 490
           AC+    +E G   H   +     L         +VD++ + G+I EA    D I    L
Sbjct: 448 ACAGLQSLEYGSVVHGKAIKSGLGLDAFVS--STVVDMYCKCGMITEAQKLHDRIGGQEL 505

Query: 491 V-------------------------------PDAFVWGALLGACKIHAKVELAEIVMEN 519
           V                               PD F +  +L  C   A +EL + +   
Sbjct: 506 VSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQ 565

Query: 520 LVRFEPEGDGAYILMT--NIYSSKNRWKEALKLRKKMKE 556
           +++ E  GD  YI  T  ++Y+      ++L + +K ++
Sbjct: 566 IIKQEMLGD-EYISSTLVDMYAKCGNMPDSLLMFEKAQK 603



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 128/265 (48%), Gaps = 15/265 (5%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N II   S N    EA   + EML  G+ P+ +T   VL  C    ++ +G+Q+H   +
Sbjct: 508 WNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQII 567

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR-DLVSWTTLIQAYVKMDYP 203
           K  +L + Y+ +TL+ +YA CG +     +F      +AQ+ D VSW  +I  Y      
Sbjct: 568 KQEMLGDEYISSTLVDMYAKCGNMPDSLLMFE-----KAQKLDFVSWNAMICGYALHGQG 622

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EA+  F  M QAN+ P+    V VL ACS +G L  G + + Y+  + + L P +    
Sbjct: 623 FEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCR-YFYLMTSRYKLEPQLEHFA 681

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
            ++D+  +      A K    MP++ + V W ++++    R   + A      +  L L 
Sbjct: 682 CMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNV--LRLD 739

Query: 323 PDDFTLVCVLNSCANIGWLELGKWV 347
           PDD ++  +L++     + E GKWV
Sbjct: 740 PDDSSVYILLSNV----YAESGKWV 760



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 76/204 (37%), Gaps = 37/204 (18%)

Query: 335 CANIG--WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           CA  G   L  G+  H  +  +      F+ N L+ MYA+CG    A GVF  M  RD  
Sbjct: 12  CAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTV 71

Query: 393 SYTAMIVGLAIHGKAWKALDIFS-------------------------------EMSQVG 421
           S+  M+   A  G    A  +F                                EM++ G
Sbjct: 72  SWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRG 131

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
           + PD  T   +L AC     +  G + H + +     L+        +VD++G+   + +
Sbjct: 132 VAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKT--GLEMDVRAGSALVDMYGKCRSLED 189

Query: 481 ALDLIKSMPLVPDAFVWGALLGAC 504
           AL     M    ++  WGA +  C
Sbjct: 190 ALRFFHGMG-ERNSVSWGAAIAGC 212


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/601 (36%), Positives = 331/601 (55%), Gaps = 54/601 (8%)

Query: 53  PQHQTQILYDKIISL----SRGNEIENL--SLQNPQVYLYNFIIQCLSNANPLE-AIALY 105
           PQ  T   Y+ ++S+     + +E  N+  S+  P    +N ++   +  +  E A+  +
Sbjct: 81  PQRNT-FSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFF 139

Query: 106 REMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC 165
            +M  +  + N Y+    L AC     L +G Q+HA   K+  L +VY+ + L+ +Y+ C
Sbjct: 140 VDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKC 199

Query: 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
           G++    + F       A R++VSW +LI  Y +     +A+  F  M    + PD + L
Sbjct: 200 GVVACAQRAFD----GMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITL 255

Query: 226 VIVLSACSKLGDLSLGIKIHRYIT--DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
             V+SAC+    +  G++IH  +   D + N   D+ + NAL+DMY KC  +  AR VFD
Sbjct: 256 ASVVSACASWSAIREGLQIHARVVKRDKYRN---DLVLGNALVDMYAKCRRVNEARLVFD 312

Query: 284 EMPV-------------------------------KNVVSWNSMIAGLTHRGQFKEALDI 312
            MP+                               KNVVSWN++IAG T  G+ +EA+ +
Sbjct: 313 RMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRL 372

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI------NTDGFIGNAL 366
           F  ++   + P  +T   +LN+CAN+  L+LG+  HT + K+         +D F+GN+L
Sbjct: 373 FLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSL 432

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           +DMY KCG ++    VF  M  RDV S+ AMIVG A +G    AL+IF +M   G +PD 
Sbjct: 433 IDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDH 492

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           VT +GVLSACSHAGLVEEG ++F  M     L P  +H+ CMVDL GRAG + EA DLI+
Sbjct: 493 VTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQ 552

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546
           +MP+ PD  VWG+LL ACK+H  +EL + V E L+  +P   G Y+L++N+Y+   RWK+
Sbjct: 553 TMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKD 612

Query: 547 ALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            +++RK+M++R V K PGCS +E+    + F   DK HP   +I+ +L  +  Q K  GY
Sbjct: 613 VVRVRKQMRQRGVIKQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVLKFLTEQMKWAGY 672

Query: 607 I 607
           +
Sbjct: 673 V 673



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 186/362 (51%), Gaps = 38/362 (10%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH------ 176
           +L +C +S+S    +++HA  +KT   S +++ N L+  Y  CG  +   K+F       
Sbjct: 25  LLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRN 84

Query: 177 -----------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
                                  F+  P+   D  SW  ++  + + D   EA+  F DM
Sbjct: 85  TFSYNAVLSVLTKFGKLDEAFNVFKSMPEP--DQCSWNAMVSGFAQHDRFEEALRFFVDM 142

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
              +   +       LSAC+ L DL++GI+IH  I+ + + L  DV++ +AL+DMY KCG
Sbjct: 143 HSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLL--DVYMGSALVDMYSKCG 200

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
            +  A++ FD M V+N+VSWNS+I      G   +AL++F  M   G++PD+ TL  V++
Sbjct: 201 VVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVS 260

Query: 334 SCANIGWLELGKWVHT-YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           +CA+   +  G  +H   + ++    D  +GNALVDMYAKC R+++A  VF  M  R+V 
Sbjct: 261 ACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVV 320

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S T+M+ G A       A  +FS M    +E + V++  +++  +  G  EE  + FL +
Sbjct: 321 SETSMVCGYARAASVKAARLMFSNM----MEKNVVSWNALIAGYTQNGENEEAVRLFLLL 376

Query: 453 SR 454
            R
Sbjct: 377 KR 378


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/579 (36%), Positives = 315/579 (54%), Gaps = 11/579 (1%)

Query: 33  SSKSVGQLKQFHAFIIKTGSP---QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYN-F 88
           S+  VG     HA     GS       T  +Y K  SL+    I N SL    +  YN  
Sbjct: 291 SALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFN-SLPKHSLQCYNAI 349

Query: 89  IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I+ C+ N    EA+  ++ +L  GL  N  +L     AC   +    G+Q+H+ S+K+ L
Sbjct: 350 IVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTL 409

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            SN+ V N+++ +Y  C  +     +F        +RD VSW  +I A+ +     E + 
Sbjct: 410 RSNICVANSILDMYGKCEALSEACCMFD----EMERRDAVSWNAVIAAHEQNGNEEETLN 465

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F  M +  + PD      VL ACS    L+ G++IH  I  +   L  D F+  ALIDM
Sbjct: 466 LFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGL--DSFVGGALIDM 523

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KCG I  A+K+ D +  + +VSWN++IAG T     ++A   F  M  + +KPD+FT 
Sbjct: 524 YCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTY 583

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             VL++CAN+  + LGK +H  + K  +++D +I + LVDMY+KCG +  +  VF     
Sbjct: 584 AIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPN 643

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           +D  ++ AMI G A HG   +AL  F  M    + P+  TFV +L AC+H G +++G  +
Sbjct: 644 KDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHY 703

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M   Y L+PQ EHY CM+D+ GR+G I EAL LI+ MP   DA +W  LL  CKIH 
Sbjct: 704 FNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHG 763

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
            +E+AE     +++ EPE   A IL++NIY+    W +  ++RK M+  K+KK PGCS +
Sbjct: 764 NIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWI 823

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           EV  E + F  G+K+HP+  EIYK+L  ++ + K  GYI
Sbjct: 824 EVKDEVHAFLVGNKTHPRYEEIYKILSVLLDEMKWIGYI 862



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 209/442 (47%), Gaps = 40/442 (9%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T  ++++ C    SL+ G+Q HA  + +  + +VY+ N LM++Y  C  +   +K+F   
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFE-- 102

Query: 179 QHPQAQRDLVSWTTLIQAYVKM-----------DYPTEAILS------------------ 209
               +QRD++S+ T+I  Y              D P   ++S                  
Sbjct: 103 --KMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSI 160

Query: 210 --FFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
             F DM ++  +  D     +VL ACS L D  LGI++H  I    F    DV   +AL+
Sbjct: 161 DVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGF--YKDVVTGSALL 218

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           DMY KC  +  + K+F E+PVKN V W+++IAG     +    L++F+ MQ +G+     
Sbjct: 219 DMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQS 278

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
               V  SCA +  L++G  +H +  K    +D  +G A +DMYAKCG +  A  +F S+
Sbjct: 279 IYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSL 338

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
               +  Y A+IVG   + K ++AL  F  + + G+  +E++  G  SAC+      +G 
Sbjct: 339 PKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDG- 397

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           +    +S    L+        ++D++G+   + EA  +   M    DA  W A++ A + 
Sbjct: 398 RQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMER-RDAVSWNAVIAAHEQ 456

Query: 507 HAKVELAEIVMENLVRFEPEGD 528
           +   E    +  +++R   E D
Sbjct: 457 NGNEEETLNLFASMLRLRMEPD 478


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/507 (38%), Positives = 297/507 (58%), Gaps = 6/507 (1%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+ +   M  + L P+  T+  VL A    + +R+G+++H Y+M+    S V +   L+ 
Sbjct: 220 ALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVD 279

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +YA CG +K    LF        +R++VSW ++I AYV+ + P EA++ F  M    ++P
Sbjct: 280 MYAKCGSLKTARLLFD----GMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKP 335

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
             + ++  L AC+ LGDL  G  IH+   +    L  +V + N+LI MY KC  + +A  
Sbjct: 336 TDVSVMGALHACADLGDLERGRFIHKLSVE--LELDRNVSVVNSLISMYCKCKEVDTAAS 393

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           +F ++  + +VSWN+MI G    G+  EAL+ F +MQ   +KPD FT V V+ + A +  
Sbjct: 394 MFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSI 453

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
               KW+H  + +N ++ + F+  ALVDMYAKCG I  A  +F  M  R V ++ AMI G
Sbjct: 454 THHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDG 513

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
              HG    AL++F EM +  I P+ VTF+ V+SACSH+GLVE G K F  M   Y+++P
Sbjct: 514 YGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEP 573

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
             +HYG MVDL GRAG + EA D I  MP+ P   V+GA+LGAC+IH  V  AE V E L
Sbjct: 574 SMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERL 633

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
               PE  G ++L+ NIY + + W++  ++R  M  + ++KTPGCS+VE+  E + F  G
Sbjct: 634 FELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSG 693

Query: 581 DKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             +HP + +IY  L++++ Q K  GY+
Sbjct: 694 STAHPSSKKIYAFLEKLICQIKEAGYV 720



 Score =  224 bits (572), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 165/586 (28%), Positives = 283/586 (48%), Gaps = 62/586 (10%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENLS-----LQNPQVY 84
           LE   S+ +L+     I K G   +Q  +   K++SL  R   ++  +     +      
Sbjct: 44  LERCSSLKELRHILPLIFKNG--LYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNV 101

Query: 85  LYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           LY  +++  +  + L+ A+  +  M    + P  Y   Y+LK C     LRVG+++H   
Sbjct: 102 LYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K+    +++    L  +YA C  +    K+F        +RDLVSW T++  Y +    
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVHEARKVF----DRMPERDLVSWNTIVAGYSQNGMA 217

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
             A+     MC+ NL+P  + +V VL A S L  + +G +IH Y     F+    V I  
Sbjct: 218 RMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFD--SLVNIAT 275

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL+DMY KCG++ +AR +FD M  +NVVSWNSMI         KEA+ IF++M   G+KP
Sbjct: 276 ALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKP 335

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
            D +++  L++CA++G LE G+++H    +  ++ +  + N+L+ MY KC  +D A  +F
Sbjct: 336 TDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMF 395

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS------ 437
             ++ R + S+ AMI+G A +G+  +AL+ FS+M    ++PD  T+V V++A +      
Sbjct: 396 GKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITH 455

Query: 438 HA----GLVEEGC--------KHFLDM----------SRVYNLQPQ--TEHYGCMVDLFG 473
           HA    G+V   C           +DM            ++++  +     +  M+D +G
Sbjct: 456 HAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYG 515

Query: 474 RAGLIREALDLIKSM---PLVPDAFVWGALLGACK----IHAKVELAEIVMENLVRFEPE 526
             G+ + AL+L + M    + P+   + +++ AC     + A ++   ++ EN    EP 
Sbjct: 516 THGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENY-SIEPS 574

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            D  Y  M ++     R  EA     +M        P    V VYG
Sbjct: 575 MD-HYGAMVDLLGRAGRLNEAWDFIMQM--------PVKPAVNVYG 611



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 129/279 (46%), Gaps = 11/279 (3%)

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHF--NLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           ++L  CS L +L       R+I    F   L  +      L+ ++ + G++  A +VF+ 
Sbjct: 42  LLLERCSSLKEL-------RHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEP 94

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           +  K  V + +M+ G        +AL  F RM+   ++P  +    +L  C +   L +G
Sbjct: 95  IDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVG 154

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           K +H  L K+  + D F    L +MYAKC ++ +A  VF  M  RD+ S+  ++ G + +
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQN 214

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G A  AL++ + M +  ++P  +T V VL A S   L+  G K     +           
Sbjct: 215 GMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIG-KEIHGYAMRAGFDSLVNI 273

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
              +VD++ + G ++ A  L   M L  +   W +++ A
Sbjct: 274 ATALVDMYAKCGSLKTARLLFDGM-LERNVVSWNSMIDA 311


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/509 (39%), Positives = 294/509 (57%), Gaps = 8/509 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E++  Y  ML +G+ P+  T   VL AC    +L  G+Q+HA  +++   S+V V   L 
Sbjct: 229 ESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALT 288

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
           ++Y  CG +K   ++F    +    RD+++W T+I   V      EA   F  M +  + 
Sbjct: 289 KMYIKCGAVKDAREVFECLPN----RDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVA 344

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           PD +  + +LSAC++ G L+ G +IH R + D    L  DV   NALI+MY K G++  A
Sbjct: 345 PDRVTYLAILSACARPGGLACGKEIHARAVKDG---LVSDVRFGNALINMYSKAGSMKDA 401

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           R+VFD MP ++VVSW +++ G    GQ  E+   F++M   G++ +  T +CVL +C+N 
Sbjct: 402 RQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNP 461

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             L+ GK +H  + K  I  D  + NAL+ MY KCG ++ A  V   M  RDV ++  +I
Sbjct: 462 VALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLI 521

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            GLA +G+  +AL  F  M    + P+  TFV V+SAC    LVEEG + F  M + Y +
Sbjct: 522 GGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGI 581

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P  +HY CMVD+  RAG + EA D+I +MP  P A +WGALL AC+ H  VE+ E   E
Sbjct: 582 VPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAE 641

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
             ++ EP+  G Y+ ++ IY++   W++  KLRK MKER VKK PG S +EV GE + F 
Sbjct: 642 QCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFV 701

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            GD+SHP+T EIY  L+ +  Q K+ GY+
Sbjct: 702 AGDQSHPRTEEIYSELEALTKQIKSLGYV 730



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 159/506 (31%), Positives = 258/506 (50%), Gaps = 38/506 (7%)

Query: 14  NDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG-SPQ-HQTQILYDKIISLSRGN 71
           + ++++  + LL    +   +K +   KQ H  I++ G  P  +    L    +     N
Sbjct: 40  SQVDSYDYVKLLQSCVK---AKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVN 96

Query: 72  EIENL--SLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACW 128
           E   L     N  V  +N +I   ++     EA  L+  M  +GL P+ +T   +L AC 
Sbjct: 97  EARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACS 156

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
              +L  G++VH   M+  L +N  V N L+ +YA CG ++   ++F       A RD V
Sbjct: 157 SPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVF----DAMASRDEV 212

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
           SWTTL  AY +  Y  E++ ++  M Q  +RP  +  + VLSAC  L  L  G +IH  I
Sbjct: 213 SWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQI 272

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
            ++  +   DV +  AL  MY+KCG +  AR+VF+ +P ++V++WN+MI GL   GQ +E
Sbjct: 273 VESEHH--SDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEE 330

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A  +F RM    + PD  T + +L++CA  G L  GK +H    K+ + +D   GNAL++
Sbjct: 331 AHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALIN 390

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           MY+K G +  A  VF  M  RDV S+TA++ G A  G+  ++   F +M Q G+E +++T
Sbjct: 391 MYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKIT 450

Query: 429 FVGVLSACS-----------HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
           ++ VL ACS           HA +V+ G   F D++ V N          ++ ++ + G 
Sbjct: 451 YMCVLKACSNPVALKWGKEIHAEVVKAGI--FADLA-VAN---------ALMSMYFKCGS 498

Query: 478 IREALDLIKSMPLVPDAFVWGALLGA 503
           + +A+ + + M    D   W  L+G 
Sbjct: 499 VEDAIRVSEGMS-TRDVVTWNTLIGG 523



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/394 (31%), Positives = 206/394 (52%), Gaps = 10/394 (2%)

Query: 111 KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170
           KG   ++Y    +L++C +++ L VG+QVH + ++  +  NVY+ NTL++LY  CG +  
Sbjct: 38  KGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNE 97

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
             +LF       + + +VSW  +I  Y       EA   F  M Q  L PD    V +LS
Sbjct: 98  ARRLFD----KFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILS 153

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           ACS    L+ G ++H  + +    L+ +  + NALI MY KCG++  AR+VFD M  ++ 
Sbjct: 154 ACSSPAALNWGREVHVRVMEA--GLANNATVGNALISMYAKCGSVRDARRVFDAMASRDE 211

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           VSW ++       G  +E+L  +  M   G++P   T + VL++C ++  LE GK +H  
Sbjct: 212 VSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQ 271

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           + ++  ++D  +  AL  MY KCG +  A  VF  +  RDV ++  MI GL   G+  +A
Sbjct: 272 IVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEA 331

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG-CMV 469
             +F  M +  + PD VT++ +LSAC+  G +   C   +    V +       +G  ++
Sbjct: 332 HGMFHRMLKECVAPDRVTYLAILSACARPGGL--ACGKEIHARAVKDGLVSDVRFGNALI 389

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           +++ +AG +++A  +   MP   D   W AL+G 
Sbjct: 390 NMYSKAGSMKDARQVFDRMPK-RDVVSWTALVGG 422



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 173/314 (55%), Gaps = 16/314 (5%)

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           Q   + D    V +L +C K  DL++G ++H +I    F + P+V+I N L+ +Y+ CG+
Sbjct: 37  QKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHIL--RFGMKPNVYIINTLLKLYVHCGS 94

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  AR++FD+   K+VVSWN MI+G  HRG  +EA ++F  MQ  GL+PD FT V +L++
Sbjct: 95  VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSA 154

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           C++   L  G+ VH  + +  +  +  +GNAL+ MYAKCG +  A  VF +M  RD  S+
Sbjct: 155 CSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 214

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           T +    A  G A ++L  +  M Q G+ P  +T++ VLSAC     +E+G        +
Sbjct: 215 TTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKG-------KQ 267

Query: 455 VYNLQPQTEHYG------CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           ++    ++EH+        +  ++ + G +++A ++ + +P   D   W  ++G      
Sbjct: 268 IHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP-NRDVIAWNTMIGGLVDSG 326

Query: 509 KVELAEIVMENLVR 522
           ++E A  +   +++
Sbjct: 327 QLEEAHGMFHRMLK 340



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 2/193 (1%)

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           D+ + +   G + D +  V +L SC     L +GK VH ++ +  +  + +I N L+ +Y
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
             CG +++A  +F     + V S+  MI G A  G   +A ++F+ M Q G+EPD+ TFV
Sbjct: 90  VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFV 149

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
            +LSACS    +  G +  + +     L         ++ ++ + G +R+A  +  +M  
Sbjct: 150 SILSACSSPAALNWGREVHVRVMEA-GLANNATVGNALISMYAKCGSVRDARRVFDAMA- 207

Query: 491 VPDAFVWGALLGA 503
             D   W  L GA
Sbjct: 208 SRDEVSWTTLTGA 220


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/585 (33%), Positives = 333/585 (56%), Gaps = 16/585 (2%)

Query: 31  LESSKSVGQL---KQFHAFIIKTG-SPQHQTQ----ILYDKIISLSRGNEIENLSLQNPQ 82
           L +  SVG L   KQ H++++K G S  + T+     LY K   +   ++I NL      
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG-DRTN 310

Query: 83  VYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           V L+N ++      + L ++  ++ +M   G+ PN +T P +L+ C  +  + +G+Q+H+
Sbjct: 311 VVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHS 370

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
            S+K    S++YV   L+ +Y+  G +    K+    +    +RD+VSWT++I  YV+ D
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLE----KRDVVSWTSMIAGYVQHD 426

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           +  EA+ +F +M    + PD + L    SAC+ +  +  G++IH  +  + +  + D+ I
Sbjct: 427 FCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY--AADISI 484

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            N L+++Y +CG    A  +F E+  K+ ++WN +I+G      +K+AL +F +M   G 
Sbjct: 485 WNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGA 544

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           K + FT +  +++ AN+  ++ GK VH    K    ++  + NAL+ +Y KCG I+ A  
Sbjct: 545 KYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKM 604

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           +F  M  R+  S+  +I   + HG+  +ALD+F +M Q G++P++VTF+GVL+ACSH GL
Sbjct: 605 IFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGL 664

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           VEEG  +F  MS VY L P  +HY C+VD+ GRAG +  A   +  MP+  +A +W  LL
Sbjct: 665 VEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLL 724

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
            ACK+H  +E+ E+  ++L+  EP    +Y+L++N Y+   +W    ++RK MK+R ++K
Sbjct: 725 SACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRK 784

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            PG S +EV    + F  GD+ HP + +IYK L E+  +    GY
Sbjct: 785 EPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGY 829



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 125/404 (30%), Positives = 202/404 (50%), Gaps = 12/404 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA  LY +M    ++P  Y L  VL AC + +    G+ +HA   K A  S  +V N L+
Sbjct: 127 EAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALI 186

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY   G  K   ++F          D V++ TLI  + +  +   A+  F +M  + LR
Sbjct: 187 ALYLGFGSFKLAERVF----CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + +  +L+AC+ +GDL  G ++H Y+      +S D     +L+D+Y+KCG+I +A 
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKA--GMSFDYITEGSLLDLYVKCGDIETAH 300

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +F+     NVV WN M+          ++ +IF +MQ  G+ P+ FT  C+L +C   G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTG 360

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            +ELG+ +H+   KN   +D ++   L+DMY+K G +D+A  +   ++ RDV S+T+MI 
Sbjct: 361 QIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIA 420

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY--N 457
           G   H    +AL  F EM   G+ PD +      SAC+    + +G +     +RVY   
Sbjct: 421 GYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIH---ARVYVSG 477

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
                  +  +V+L+ R G   EA  L + +    D   W  L+
Sbjct: 478 YAADISIWNTLVNLYARCGRSEEAFSLFREIEH-KDEITWNGLI 520



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 206/409 (50%), Gaps = 8/409 (1%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+ ++ EM + GL P+  T+  +L AC     L+ G+Q+H+Y +K  +  +     +L+ 
Sbjct: 229 ALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLD 288

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           LY  CG I+  H +F+       + ++V W  ++ AY ++    ++   F  M    + P
Sbjct: 289 LYVKCGDIETAHDIFNLGD----RTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHP 344

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           +      +L  C+  G + LG +IH     N F    D+++   LIDMY K G +  ARK
Sbjct: 345 NQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFE--SDMYVSGVLIDMYSKYGCLDKARK 402

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           + + +  ++VVSW SMIAG       +EAL  F+ MQ  G+ PD+  L    ++CA I  
Sbjct: 403 ILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKA 462

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           +  G  +H  +  +    D  I N LV++YA+CGR ++AF +FR ++ +D  ++  +I G
Sbjct: 463 MRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISG 522

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
                   +AL +F +M Q G + +  TF+  +SA ++   +++G K     +       
Sbjct: 523 FGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQG-KQVHGRAVKTGHTS 581

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           +TE    ++ L+G+ G I +A  +   M L  +   W  ++ +C  H +
Sbjct: 582 ETEVANALISLYGKCGSIEDAKMIFSEMSL-RNEVSWNTIITSCSQHGR 629



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 183/366 (50%), Gaps = 8/366 (2%)

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           ++HA S+   L ++  + N L+ LYA  GL+    ++F       + RD VSW  ++  Y
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFK----ELSSRDHVSWVAMLSGY 119

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            +     EA   +  M    + P   +L  VLSAC+K    + G  IH  +    F    
Sbjct: 120 AQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAF--CS 177

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           + F+ NALI +YL  G+   A +VF +M   + V++N++I+G    G  + AL IF  MQ
Sbjct: 178 ETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQ 237

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             GL+PD  T+  +L +CA++G L+ GK +H+YL K  ++ D     +L+D+Y KCG I+
Sbjct: 238 LSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIE 297

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A  +F      +V  +  M+V         K+ +IF +M   GI P++ T+  +L  C+
Sbjct: 298 TAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCT 357

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
             G +E G +    +S     +      G ++D++ + G + +A  +++ M    D   W
Sbjct: 358 CTGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILE-MLEKRDVVSW 415

Query: 498 GALLGA 503
            +++  
Sbjct: 416 TSMIAG 421


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/553 (35%), Positives = 320/553 (57%), Gaps = 31/553 (5%)

Query: 58  QILYDKIISLSRGNEIENL--SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLL 114
           +I+ +K I   R      L   L +  V  +N +I   +SN      + +Y++M+  G+ 
Sbjct: 51  KIMVEKGIEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 110

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
            +  T+  VL  C +S +L +G+ VH+ ++K++    +   NTL+ +Y+ CG +    ++
Sbjct: 111 VDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 170

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F        +R++VSWT++I  Y +  +   AI+    M +  ++ D + +  +L AC++
Sbjct: 171 FE----KMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACAR 226

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
            G L  G  +H YI  N  N++ ++F+ NAL+DMY KCG++  A  VF  M VK+++SWN
Sbjct: 227 SGSLDNGKDVHDYIKAN--NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWN 284

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           +M+  L                     KPD  T+ C+L +CA++  LE GK +H Y+ +N
Sbjct: 285 TMVGEL---------------------KPDSRTMACILPACASLSALERGKEIHGYILRN 323

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
             ++D  + NALVD+Y KCG +  A  +F  +  +D+ S+T MI G  +HG   +A+  F
Sbjct: 324 GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATF 383

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           +EM   GIEPDEV+F+ +L ACSH+GL+E+G + F  M   +N++P+ EHY CMVDL  R
Sbjct: 384 NEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSR 443

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
            G + +A   I+++P+ PDA +WGALL  C+I+  +ELAE V E +   EPE  G Y+L+
Sbjct: 444 TGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLL 503

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDK-SHPKTLEIYKL 593
            NIY+   +W+E  ++R+K+ ++ ++K PGCS +E+ G    F  G+  SHP + +I  L
Sbjct: 504 ANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESL 563

Query: 594 LDEIMHQSKNHGY 606
           L ++  + K  GY
Sbjct: 564 LKKMRRKMKEEGY 576



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 129/297 (43%), Gaps = 53/297 (17%)

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA--------------- 309
           L+  Y  CG++   R+VFD M  KNV  WN M++     G FKE+               
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 310 ------------------------------------LDIFRRMQGLGLKPDDFTLVCVLN 333
                                               L I+++M  LG+  D  T++ VL 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
            CA  G L LGK VH+   K+         N L+DMY+KCG +D A  VF  M  R+V S
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           +T+MI G    G +  A+ +  +M + G++ D V    +L AC+ +G ++ G K   D  
Sbjct: 182 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNG-KDVHDYI 240

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
           +  N+         ++D++ + G +  A  +  +M +V D   W  ++G  K  ++ 
Sbjct: 241 KANNMASNLFVCNALMDMYAKCGSMEGANSVFSTM-VVKDIISWNTMVGELKPDSRT 296


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/580 (35%), Positives = 327/580 (56%), Gaps = 14/580 (2%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYN 87
           +S  V + K+ H +++K G   +   ++   I +  +  E+E+       L +  V  +N
Sbjct: 170 ASAKVRECKRVHGYVLKLGFGSYNA-VVNSLIAAYFKCGEVESARILFDELSDRDVVSWN 228

Query: 88  FIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
            +I  C  N      +  + +ML  G+  ++ TL  VL AC    +L +G+ +HAY +K 
Sbjct: 229 SMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKA 288

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
                V   NTL+ +Y+ CG +   +++F        +  +VSWT++I A+V+     EA
Sbjct: 289 GFSGGVMFNNTLLDMYSKCGNLNGANEVFV----KMGETTIVSWTSIIAAHVREGLHYEA 344

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           I  F +M    LRPD   +  V+ AC+    L  G ++H +I  N  N+  ++ + NAL+
Sbjct: 345 IGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKN--NMGSNLPVSNALM 402

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           +MY KCG++  A  +F ++PVKN+VSWN+MI G +      EAL +F  MQ   LKPDD 
Sbjct: 403 NMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQK-QLKPDDV 461

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T+ CVL +CA +  LE G+ +H ++ +    +D  +  ALVDMY KCG +  A  +F  +
Sbjct: 462 TMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMI 521

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             +D+  +T MI G  +HG   +A+  F +M   GIEP+E +F  +L AC+H+GL++EG 
Sbjct: 522 PKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGW 581

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           K F  M    N++P+ EHY CMVDL  R+G +  A   I++MP+ PDA +WGALL  C+I
Sbjct: 582 KLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRI 641

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H  VELAE V E++   EPE    Y+L+ N+Y+   +W+E  K+++++ +  +K   GCS
Sbjct: 642 HHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCS 701

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            +EV G+F  F  GD SHP+   I  LL ++  +    GY
Sbjct: 702 WIEVQGKFNIFFAGDTSHPQAKMIDSLLRKLTMKMNRGGY 741



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 155/533 (29%), Positives = 264/533 (49%), Gaps = 27/533 (5%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQT-----QILYDKIISLSRGNEIENLSLQNPQVYLYNFI 89
           KS+   K+ H+ I   G    +        +Y     L +G  I +  + N +++L+N +
Sbjct: 71  KSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFD-GILNDKIFLWNLL 129

Query: 90  IQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           +   +   N  E++ L+ +M   G+  ++YT   VLK    S  +R  ++VH Y +K   
Sbjct: 130 MSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGF 189

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            S   V N+L+  Y  CG +++   LF       + RD+VSW ++I       +    + 
Sbjct: 190 GSYNAVVNSLIAAYFKCGEVESARILF----DELSDRDVVSWNSMISGCTMNGFSRNGLE 245

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F  M    +  D   LV VL AC+ +G+L+LG  +H Y     F  S  V  +N L+DM
Sbjct: 246 FFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGF--SGGVMFNNTLLDM 303

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KCGN+  A +VF +M    +VSW S+IA     G   EA+ +F  MQ  GL+PD + +
Sbjct: 304 YSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAV 363

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             V+++CA    L+ G+ VH ++ KN++ ++  + NAL++MYAKCG +++A  +F  +  
Sbjct: 364 TSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPV 423

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK- 447
           +++ S+  MI G + +    +AL +F +M Q  ++PD+VT   VL AC+    +E+G + 
Sbjct: 424 KNIVSWNTMIGGYSQNSLPNEALQLFLDM-QKQLKPDDVTMACVLPACAGLAALEKGREI 482

Query: 448 --HFLDMSRVYNLQPQTEHYGC-MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
             H L      +L     H  C +VD++ + GL+  A  L   +P   D  +W  ++   
Sbjct: 483 HGHILRKGYFSDL-----HVACALVDMYVKCGLLVLAQQLFDMIP-KKDMILWTVMIAGY 536

Query: 505 KIH--AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
            +H   K  ++      +   EPE + ++  +    +     KE  KL   MK
Sbjct: 537 GMHGFGKEAISTFEKMRVAGIEPE-ESSFTSILYACTHSGLLKEGWKLFDSMK 588



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 191/388 (49%), Gaps = 10/388 (2%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           NTY    VL+ C + +SL  G++VH+      +  +  +   L+ +Y  CG +    ++F
Sbjct: 58  NTYC--SVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIF 115

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
               + +    +  W  L+  Y K+    E++  F  M +  +R D      VL   +  
Sbjct: 116 DGILNDK----IFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAAS 171

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
             +    ++H Y+    F     V   N+LI  Y KCG + SAR +FDE+  ++VVSWNS
Sbjct: 172 AKVRECKRVHGYVLKLGFGSYNAVV--NSLIAAYFKCGEVESARILFDELSDRDVVSWNS 229

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           MI+G T  G  +  L+ F +M  LG+  D  TLV VL +CAN+G L LG+ +H Y  K  
Sbjct: 230 MISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAG 289

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
            +      N L+DMY+KCG ++ A  VF  M    + S+T++I      G  ++A+ +F 
Sbjct: 290 FSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFD 349

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           EM   G+ PD      V+ AC+ +  +++G +   +  +  N+         +++++ + 
Sbjct: 350 EMQSKGLRPDIYAVTSVVHACACSNSLDKG-REVHNHIKKNNMGSNLPVSNALMNMYAKC 408

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGA 503
           G + EA +LI S   V +   W  ++G 
Sbjct: 409 GSMEEA-NLIFSQLPVKNIVSWNTMIGG 435



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 5/242 (2%)

Query: 268 MYLKCGNIPSARKVFDEMPVKNV-VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           M L CG+         E    NV V  N+ I      G  + A+ +  R Q   L+ +  
Sbjct: 1   MDLSCGSSVGVSATLSETTHNNVTVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELN-- 58

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T   VL  CA +  LE GK VH+ +  N +  D  +G  LV MY  CG + +   +F  +
Sbjct: 59  TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
               ++ +  ++   A  G   +++ +F +M ++GI  D  TF  VL   + +  V E C
Sbjct: 119 LNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRE-C 177

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           K                    ++  + + G +  A  L   +    D   W +++  C +
Sbjct: 178 KRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELS-DRDVVSWNSMISGCTM 236

Query: 507 HA 508
           + 
Sbjct: 237 NG 238


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/531 (37%), Positives = 311/531 (58%), Gaps = 8/531 (1%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +  P + L+N II+  +  N ++A I +Y +M I  + PN +T  YVLKAC  +    +G
Sbjct: 45  VSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIG 104

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+H  + K    SNV+V N+L+ +YA  G I     +F  + H    R +VSWT++I  
Sbjct: 105 KQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFD-KLH---DRTVVSWTSIISG 160

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           YV+   P EA+  F +M Q N++PD + LV V++A + + DL  G  IH  +T       
Sbjct: 161 YVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFE 220

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           PD+ I  +L  MY K G +  AR  F+ M   N++ WN+MI+G  + G  +EA+ +FR M
Sbjct: 221 PDIVI--SLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREM 278

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
               ++ D  T+   + + A +G LEL +W+  Y+ K+    D F+   L+DMYAKCG I
Sbjct: 279 ITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSI 338

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
             A  VF  +  +DV  ++ MI+G  +HG   +A+ +++EM Q G+ P++ TF+G+L+AC
Sbjct: 339 YLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTAC 398

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
            ++GLV+EG + F  M   + ++P  +HY C+VDL GRAG + +A D I SMP+ P   V
Sbjct: 399 KNSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSV 457

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           WGALL ACKIH KV L EI  E L   +P   G Y+ ++N+Y+S + W     +R  M +
Sbjct: 458 WGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQ 517

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + + K  G S +E+ G    F+ GD+SHPK+ EI++ LD +  + K  GY+
Sbjct: 518 KGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYV 568



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 121/244 (49%), Gaps = 2/244 (0%)

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
           F+    I+  L  G++  A K F E+   +++ WN++I G T +      + ++  MQ  
Sbjct: 20  FLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQIS 79

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            + P+ FT + VL +C       +GK +H    K    ++ F+ N+LV MYAK G+I  A
Sbjct: 80  QVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYA 139

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             VF  +  R V S+T++I G   +G   +AL++F EM Q  ++PD +  V V++A ++ 
Sbjct: 140 RIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 199

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
             + +G K    +     L+ + +    +  ++ + GL+  A      M   P+  +W A
Sbjct: 200 EDLGQG-KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNA 257

Query: 500 LLGA 503
           ++  
Sbjct: 258 MISG 261


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/531 (37%), Positives = 311/531 (58%), Gaps = 8/531 (1%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +  P + L+N II+  +  N ++A I +Y +M I  + PN +T  YVLKAC  +    +G
Sbjct: 60  VSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIG 119

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+H  + K    SNV+V N+L+ +YA  G I     +F  + H    R +VSWT++I  
Sbjct: 120 KQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFD-KLH---DRTVVSWTSIISG 175

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           YV+   P EA+  F +M Q N++PD + LV V++A + + DL  G  IH  +T       
Sbjct: 176 YVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFE 235

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           PD+ I  +L  MY K G +  AR  F+ M   N++ WN+MI+G  + G  +EA+ +FR M
Sbjct: 236 PDIVI--SLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREM 293

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
               ++ D  T+   + + A +G LEL +W+  Y+ K+    D F+   L+DMYAKCG I
Sbjct: 294 ITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSI 353

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
             A  VF  +  +DV  ++ MI+G  +HG   +A+ +++EM Q G+ P++ TF+G+L+AC
Sbjct: 354 YLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTAC 413

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
            ++GLV+EG + F  M   + ++P  +HY C+VDL GRAG + +A D I SMP+ P   V
Sbjct: 414 KNSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSV 472

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           WGALL ACKIH KV L EI  E L   +P   G Y+ ++N+Y+S + W     +R  M +
Sbjct: 473 WGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQ 532

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + + K  G S +E+ G    F+ GD+SHPK+ EI++ LD +  + K  GY+
Sbjct: 533 KGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYV 583



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 121/244 (49%), Gaps = 2/244 (0%)

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
           F+    I+  L  G++  A K F E+   +++ WN++I G T +      + ++  MQ  
Sbjct: 35  FLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQIS 94

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            + P+ FT + VL +C       +GK +H    K    ++ F+ N+LV MYAK G+I  A
Sbjct: 95  QVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYA 154

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             VF  +  R V S+T++I G   +G   +AL++F EM Q  ++PD +  V V++A ++ 
Sbjct: 155 RIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 214

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
             + +G K    +     L+ + +    +  ++ + GL+  A      M   P+  +W A
Sbjct: 215 EDLGQG-KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNA 272

Query: 500 LLGA 503
           ++  
Sbjct: 273 MISG 276


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/609 (33%), Positives = 329/609 (54%), Gaps = 38/609 (6%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL---SLQNPQVYLYNFIIQ 91
           KS  Q KQ HA  I+T S  H +  +   I +  +      L   +L++P V  +  +I+
Sbjct: 19  KSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIR 78

Query: 92  CLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
           C ++ +   +A+A + EM   G  P+    P VLK+C     LR G+ VH + ++  +  
Sbjct: 79  CFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDC 138

Query: 151 NVYVFNTLMRLYA-VCGLIKAVHKLFHFRQHPQ--------------------------- 182
           ++Y  N LM +YA + G+   +     F + PQ                           
Sbjct: 139 DLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRV 198

Query: 183 ----AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                ++D+VS+ T+I  Y +     +A+    +M   +L+PD   L  VL   S+  D+
Sbjct: 199 FEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDV 258

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G +IH Y+      +  DV+I ++L+DMY K   I  + +VF  +  ++ +SWNS++A
Sbjct: 259 IKGKEIHGYVIRK--GIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVA 316

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G    G++ EAL +FR+M    +KP       V+ +CA++  L LGK +H Y+ +    +
Sbjct: 317 GYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGS 376

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           + FI +ALVDMY+KCG I  A  +F  M   D  S+TA+I+G A+HG   +A+ +F EM 
Sbjct: 377 NIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMK 436

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
           + G++P++V FV VL+ACSH GLV+E   +F  M++VY L  + EHY  + DL GRAG +
Sbjct: 437 RQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKL 496

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            EA + I  M + P   VW  LL +C +H  +ELAE V E +   + E  GAY+LM N+Y
Sbjct: 497 EEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMY 556

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           +S  RWKE  KLR +M+++ ++K P CS +E+  + + F  GD+SHP   +I + L  +M
Sbjct: 557 ASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVM 616

Query: 599 HQSKNHGYI 607
            Q +  GY+
Sbjct: 617 EQMEKEGYV 625


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/503 (38%), Positives = 305/503 (60%), Gaps = 37/503 (7%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR-DLVSWTTLIQ 195
           +QVHA  +KT    ++     L R+  VC    + H      +  + Q+ +   W + ++
Sbjct: 45  RQVHAQIIKTNAPLSIL---PLTRVGLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLK 101

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           A  + D P +AI+ F+ + Q ++ PD      VL AC  L DLS G  +H  +    F  
Sbjct: 102 ALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFR- 160

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN--------------------- 294
             ++++ N ++ +Y  CG +  AR +F++MP ++VV+WN                     
Sbjct: 161 -SNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSR 219

Query: 295 ----------SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
                     SMIAG    G+ KEA+ +F +M+  G+K ++ T+V VL +CA++G L+LG
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLG 279

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
             +H Y +++    +  I N L+DMY KCG +++A  VF  M+ R V S++AMI GLA+H
Sbjct: 280 MRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMH 339

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G+A +AL +FS+MSQVGIEP+ VTF+G+L ACSH GL+ EG + F  M+R Y + PQ EH
Sbjct: 340 GRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEH 399

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           YGCMVDL  RAGL+ EA + I +MP+ P+  VWGALLGAC++H  VE+AE  +++L+  +
Sbjct: 400 YGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELD 459

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           P  DG Y++++NIY+   RW++  ++RK MK+R+VKKTPG S + V G  +EF  G++SH
Sbjct: 460 PLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESH 519

Query: 585 PKTLEIYKLLDEIMHQSKNHGYI 607
           P T +I++  +E++ + +  GY+
Sbjct: 520 PDTEQIFQRWEELLEEMRLKGYV 542



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 199/390 (51%), Gaps = 49/390 (12%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII-----SLSRGNEI-ENLSLQNPQVY 84
           L +  S  +L+Q HA IIKT +P     +    ++     S     +I E +  Q P+ +
Sbjct: 35  LRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQKPETF 94

Query: 85  LYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           ++N  ++ L+  + P++AI L+  +    + P+T+T   VL+AC     L  G+ +H   
Sbjct: 95  VWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVV 154

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------------------------- 176
            K    SN+Y+ N ++ LYA CG +     LF                            
Sbjct: 155 EKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAY 214

Query: 177 --FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
             F + P  +R++ SWT++I  YV+     EAI  F  M +A ++ + + +V VL+AC+ 
Sbjct: 215 DLFSRMP--ERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACAD 272

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           LG L LG++IH Y   N      +V I N LIDMY+KCG +  A KVF+EM  + VVSW+
Sbjct: 273 LGALDLGMRIHEY--SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWS 330

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           +MI GL   G+ +EAL +F  M  +G++P+  T + +L++C+++G +  G+     + ++
Sbjct: 331 AMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD 390

Query: 355 HINTDGFIGN-----ALVDMYAKCGRIDQA 379
           +    G I        +VD+ ++ G + +A
Sbjct: 391 Y----GIIPQIEHYGCMVDLLSRAGLLHEA 416



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 124/261 (47%), Gaps = 15/261 (5%)

Query: 90  IQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           +QC       EAI L+ +M   G+  N  T+  VL AC    +L +G ++H YS +    
Sbjct: 236 VQC---GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFK 292

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
            NV + NTL+ +Y  CG ++   K+F        +R +VSW+ +I          EA+  
Sbjct: 293 RNVRISNTLIDMYVKCGCLEEACKVF----EEMEERTVVSWSAMIGGLAMHGRAEEALRL 348

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F DM Q  + P+G+  + +L ACS +G +S G +    +T + + + P +  +  ++D+ 
Sbjct: 349 FSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD-YGIIPQIEHYGCMVDLL 407

Query: 270 LKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
            + G +  A +    MP+K N V W +++         + A +  + +  L    D + +
Sbjct: 408 SRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYV 467

Query: 329 VCVLNSCANIGWLELGKWVHT 349
           V      +NI + E G+W  T
Sbjct: 468 V-----LSNI-YAEAGRWEDT 482


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/576 (35%), Positives = 325/576 (56%), Gaps = 14/576 (2%)

Query: 37   VGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQ 91
            V + K+ H +++K G   + T ++   I +  +   +E+       L  P V  +N +I 
Sbjct: 486  VKECKRVHGYVLKLGFGSN-TAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 544

Query: 92   -CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
             C+ N      + ++ +MLI G+  +  TL  VL A     +L +G+ +H + +K     
Sbjct: 545  GCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSE 604

Query: 151  NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
             V   NTL+ +Y+ CG +    ++F           +VSWT+ I AYV+    ++AI  F
Sbjct: 605  EVVFSNTLLDMYSKCGNLNGATEVFV----KMGDTTIVSWTSTIAAYVREGLYSDAIGLF 660

Query: 211  FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             +M    +RPD   +  ++ AC+    L  G  +H Y+  N   +  ++ + NALI+MY 
Sbjct: 661  DEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN--GMGSNLPVTNALINMYA 718

Query: 271  KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
            KCG++  AR VF ++PVK++VSWN+MI G +      EAL++F  MQ    KPDD T+ C
Sbjct: 719  KCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQK-QFKPDDITMAC 777

Query: 331  VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
            VL +CA +  L+ G+ +H ++ +    +D  +  ALVDMYAKCG +  A  +F  +  +D
Sbjct: 778  VLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKD 837

Query: 391  VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
            + S+T MI G  +HG   +A+  F+EM   GIEPDE +F  +L+ACSH+GL+ EG K F 
Sbjct: 838  LISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFN 897

Query: 451  DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
             M     ++P+ EHY C+VDL  R G + +A   I+SMP+ PD  +WG LL  C+IH  V
Sbjct: 898  SMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDV 957

Query: 511  ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
            +LAE V E++   EP+    Y+++ N+Y+   +W+E  KLRK+M++R  K+ PGCS +EV
Sbjct: 958  KLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEV 1017

Query: 571  YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             G+F  F  G+  HP+   I  LL ++  Q +N  Y
Sbjct: 1018 GGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDY 1053



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/484 (30%), Positives = 249/484 (51%), Gaps = 24/484 (4%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQT-----QILYDKIISLSRGNEIENLSLQNPQVYLYNFI 89
           KS+   K+ H+ II  G    +        +Y     L +G +I +  + N +V+L+N +
Sbjct: 383 KSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFD-KIMNDKVFLWNLL 441

Query: 90  IQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           +   +   N  E+++L+++M   G++ N YT   VLK       ++  ++VH Y +K   
Sbjct: 442 MSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGF 501

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            SN  V N+L+  Y   G +++ H LF     P    D+VSW ++I   V   +    + 
Sbjct: 502 GSNTAVVNSLIAAYFKFGGVESAHNLFDELSEP----DVVSWNSMINGCVVNGFSGNGLE 557

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F  M    +  D   LV VL A + +G+LSLG  +H +     F  S +V   N L+DM
Sbjct: 558 IFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACF--SEEVVFSNTLLDM 615

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KCGN+  A +VF +M    +VSW S IA     G + +A+ +F  MQ  G++PD +T+
Sbjct: 616 YSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTV 675

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             ++++CA    L+ G+ VH+Y+ KN + ++  + NAL++MYAKCG +++A  VF  +  
Sbjct: 676 TSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV 735

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK- 447
           +D+ S+  MI G + +    +AL++F +M Q   +PD++T   VL AC+    +++G + 
Sbjct: 736 KDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREI 794

Query: 448 --HFLDMSRVYNLQPQTEHYGC-MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
             H L      +L     H  C +VD++ + GL+  A  L   +P   D   W  ++   
Sbjct: 795 HGHILRRGYFSDL-----HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGY 848

Query: 505 KIHA 508
            +H 
Sbjct: 849 GMHG 852



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 198/408 (48%), Gaps = 15/408 (3%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           VL+ C + +SL  G++VH+  +   +  +  +   L+ +Y  CG +    K+F      +
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFD-----K 429

Query: 183 AQRDLVS-WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
              D V  W  L+  Y K+    E++  F  M +  +  +      VL   + LG +   
Sbjct: 430 IMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKEC 489

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            ++H Y+    F  +  V   N+LI  Y K G + SA  +FDE+   +VVSWNSMI G  
Sbjct: 490 KRVHGYVLKLGFGSNTAVV--NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV 547

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
             G     L+IF +M  LG++ D  TLV VL + ANIG L LG+ +H +  K   + +  
Sbjct: 548 VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVV 607

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
             N L+DMY+KCG ++ A  VF  M    + S+T+ I      G    A+ +F EM   G
Sbjct: 608 FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKG 667

Query: 422 IEPDEVTFVGVLSACSHAGLVEEG--CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
           + PD  T   ++ AC+ +  +++G     ++  + + +  P T     +++++ + G + 
Sbjct: 668 VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTN---ALINMYAKCGSVE 724

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHA-KVELAEIVMENLVRFEPE 526
           EA  +   +P V D   W  ++G    ++   E  E+ ++   +F+P+
Sbjct: 725 EARLVFSKIP-VKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPD 771



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 165/342 (48%), Gaps = 38/342 (11%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL  C++   L  G ++H  I  N   +S D  +   L+ MY+ CG++   RK+FD++  
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISN--GISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMN 432

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
             V  WN +++     G F+E++ +F++MQ LG+  + +T  CVL   A +G ++  K V
Sbjct: 433 DKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 492

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H Y+ K    ++  + N+L+  Y K G ++ A  +F  +   DV S+ +MI G  ++G +
Sbjct: 493 HGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 552

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------------------CKHF 449
              L+IF +M  +G+E D  T V VL A ++ G +  G                      
Sbjct: 553 GNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTL 612

Query: 450 LDM-SRVYNLQPQTEHYGCMVDL-----------FGRAGLIREAL---DLIKSMPLVPDA 494
           LDM S+  NL   TE +  M D            + R GL  +A+   D ++S  + PD 
Sbjct: 613 LDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDI 672

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536
           +   +++ AC   + ++    V   +++    G G+ + +TN
Sbjct: 673 YTVTSIVHACACSSSLDKGRDVHSYVIK---NGMGSNLPVTN 711


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/589 (33%), Positives = 335/589 (56%), Gaps = 18/589 (3%)

Query: 28  SPRLESSKSVGQLK---QFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENL-----SL 78
           S  L +  S+G L+   Q H+++ K G       I+   ++ L  +  ++E       S 
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISS--DYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 79  QNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
               V L+N ++      N L ++  L+ +M   G+ PN +T P +L+ C  ++ + +G+
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           Q+H+ S+KT   S++YV   L+ +Y+  G ++   ++    +    ++D+VSWT++I  Y
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK----EKDVVSWTSMIAGY 421

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           V+ +   +A+ +F +M +  + PD + L   +S C+ +  +  G++IH  I  + +  S 
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGY--SG 479

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           DV I NAL+++Y +CG I  A   F+E+  K+ ++WN +++G    G  +EAL +F RM 
Sbjct: 480 DVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMD 539

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             G+K + FT V  L++ AN+  ++ GK +H  + K   + +  +GNAL+ +Y KCG  +
Sbjct: 540 QSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFE 599

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F  M  R+  S+  +I   + HG+  +ALD+F +M + GI+P++VTF+GVL+ACS
Sbjct: 600 DAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           H GLVEEG  +F  MS  Y ++P+ +HY C++D+FGRAG +  A   I+ MP+  DA VW
Sbjct: 660 HVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVW 719

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
             LL ACK+H  +E+ E   ++L+  EP    +Y+L++N Y+   +W    ++RK M++R
Sbjct: 720 RTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDR 779

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            V+K PG S +EV    + F  GD+ HP   +IY  L  I  +    GY
Sbjct: 780 GVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGY 828



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 213/414 (51%), Gaps = 13/414 (3%)

Query: 93  LSNANPLEAIALYREMLIK--GLLPNTYTLPYVLKAC-WQSQSLRVGQQVHAYSMKTALL 149
           L++ +P + ++L+ +   +  GL P  +     L+AC    +  +V  ++HA ++   L 
Sbjct: 17  LAHEDPAKVLSLFADKARQHGGLGPLDFAC--ALRACRGNGRRWQVVPEIHAKAVTRGLG 74

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
               V N L+ LY+  GL+    ++F       + RD VSW  ++  Y +     EA+  
Sbjct: 75  KYRIVGNLLIDLYSKNGLVLPARRVFE----ELSARDNVSWVAMLSGYAQNGLGEEALGL 130

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           +  M +A + P   +L  VLS+C+K    + G  IH     + F    ++F+ NA+I +Y
Sbjct: 131 YRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGF--CSEIFVGNAVITLY 188

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
           L+CG+   A +VF +MP ++ V++N++I+G    G  + AL+IF  MQ  GL PD  T+ 
Sbjct: 189 LRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTIS 248

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            +L +CA++G L+ G  +H+YL K  I++D  +  +L+D+Y KCG ++ A  +F S    
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT 308

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           +V  +  M+V         K+ ++F +M   GI P++ T+  +L  C+    ++ G +  
Sbjct: 309 NVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG-EQI 367

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
             +S     +      G ++D++ + G + +A  +++ M    D   W +++  
Sbjct: 368 HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAG 420


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/508 (38%), Positives = 295/508 (58%), Gaps = 6/508 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E++  Y  ML + + P+  T   VL AC    +L  G+Q+HA+ +++   S+V V   L 
Sbjct: 213 ESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALT 272

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
           ++Y  CG  K   ++F    +    RD+++W T+I+ +V      EA  +F  M +  + 
Sbjct: 273 KMYMKCGAFKDAREVFECLSY----RDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVA 328

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD      VLSAC++ G L+ G +IH     +   L  DV   NALI+MY K G++  AR
Sbjct: 329 PDRATYTTVLSACARPGGLARGKEIHARAAKD--GLVSDVRFGNALINMYSKAGSMKDAR 386

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +VFD MP ++VVSW +++       Q  E+   F++M   G+K +  T +CVL +C+N  
Sbjct: 387 QVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPV 446

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ GK +H  + K  +  D  + NAL+ MY KCG ++ A  VF  M  RDV ++  +I 
Sbjct: 447 ALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIG 506

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           GL  +G+  +AL  +  M   G+ P+  TFV VLSAC    LVEEG + F  MS+ Y + 
Sbjct: 507 GLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIV 566

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  +HY CMVD+  RAG +REA D+I ++PL P A +WGALL AC+IH  VE+ E   E+
Sbjct: 567 PTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEH 626

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
            ++ EP+  G Y+ ++ IY++   W++  KLRK MKER VKK PG S +E+ GE + F  
Sbjct: 627 CLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVA 686

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            D+SHP+T EIY  L+ +  Q K+ GY+
Sbjct: 687 RDQSHPRTQEIYAELETLKKQMKSLGYV 714



 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 160/534 (29%), Positives = 259/534 (48%), Gaps = 47/534 (8%)

Query: 16  INTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG-SPQ-HQTQILYDKIISLSRGNEI 73
           ++++  + LL    +   +K +   KQ H  I++ G  P  + T  L          NE 
Sbjct: 26  VDSYDYVKLLQSCVK---AKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEA 82

Query: 74  ENL--SLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQS 130
             L     N  V  +N +I   ++     EA  L+  M  + L P+ +T   +L AC   
Sbjct: 83  RQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSP 142

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
             L  G+++H   M+  L ++  V N L+ +YA CG ++   ++F       A RD VSW
Sbjct: 143 AVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVF----DAMASRDEVSW 198

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
           TTL  AY +  Y  E++ ++  M Q  +RP  +  + VLSAC  L  L  G +IH +I +
Sbjct: 199 TTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVE 258

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
           + ++   DV +  AL  MY+KCG    AR+VF+ +  ++V++WN+MI G    GQ +EA 
Sbjct: 259 SEYH--SDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAH 316

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
             F RM   G+ PD  T   VL++CA  G L  GK +H    K+ + +D   GNAL++MY
Sbjct: 317 GTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMY 376

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           +K G +  A  VF  M  RDV S+T ++   A   +  ++   F +M Q G++ +++T++
Sbjct: 377 SKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYM 436

Query: 431 GVLSACS-----------HAGLVEEG-----------------CKHFLDMSRVYNLQPQT 462
            VL ACS           HA +V+ G                 C    D  RV+      
Sbjct: 437 CVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMR 496

Query: 463 E--HYGCMVDLFGRAGLIREAL---DLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           +   +  ++   G+ G   EAL   +++KS  + P+A  +  +L AC++   VE
Sbjct: 497 DVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVE 550



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 125/392 (31%), Positives = 200/392 (51%), Gaps = 8/392 (2%)

Query: 111 KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170
           KG   ++Y    +L++C +++ L VG+QVH + ++  +  NVY+ NTL++LYA CG +  
Sbjct: 22  KGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNE 81

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
             +LF       + + +VSW  +I  Y       EA   F  M Q  L PD    V +LS
Sbjct: 82  ARQLFD----KFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILS 137

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           ACS    L+ G +IH  + +    L+ D  + NALI MY KCG++  AR+VFD M  ++ 
Sbjct: 138 ACSSPAVLNWGREIHVRVMEA--GLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDE 195

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           VSW ++       G  +E+L  +  M    ++P   T + VL++C ++  LE GK +H +
Sbjct: 196 VSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAH 255

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           + ++  ++D  +  AL  MY KCG    A  VF  +  RDV ++  MI G    G+  +A
Sbjct: 256 IVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEA 315

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
              F  M + G+ PD  T+  VLSAC+  G +  G K     +    L         +++
Sbjct: 316 HGTFHRMLEEGVAPDRATYTTVLSACARPGGLARG-KEIHARAAKDGLVSDVRFGNALIN 374

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           ++ +AG +++A  +   MP   D   W  LLG
Sbjct: 375 MYSKAGSMKDARQVFDRMPK-RDVVSWTTLLG 405



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 2/193 (1%)

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           D+ + +   G + D +  V +L SC     L +GK VH ++ +  +  + +I N L+ +Y
Sbjct: 14  DVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLY 73

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           A CG +++A  +F     + V S+  MI G A  G A +A ++F+ M Q  +EPD+ TFV
Sbjct: 74  AHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFV 133

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
            +LSACS   ++  G +  + +     L   T     ++ ++ + G +R+A  +  +M  
Sbjct: 134 SILSACSSPAVLNWGREIHVRVMEA-GLANDTTVGNALISMYAKCGSVRDARRVFDAMA- 191

Query: 491 VPDAFVWGALLGA 503
             D   W  L GA
Sbjct: 192 SRDEVSWTTLTGA 204



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 104/202 (51%), Gaps = 6/202 (2%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           +E+   +++ML +G+  N  T   VLKAC    +L+ G+++HA  +K  LL+++ V N L
Sbjct: 414 VESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNAL 473

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           M +Y  CG ++   ++F       + RD+V+W TLI    +     EA+  +  M    +
Sbjct: 474 MSMYFKCGSVEDAIRVF----EGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGM 529

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           RP+    V VLSAC     +  G +   +++ + + + P    +  ++D+  + G++  A
Sbjct: 530 RPNAATFVNVLSACRVCNLVEEGRRQFAFMSKD-YGIVPTEKHYACMVDILARAGHLREA 588

Query: 279 RKVFDEMPVK-NVVSWNSMIAG 299
             V   +P+K +   W +++A 
Sbjct: 589 EDVILTIPLKPSAAMWGALLAA 610


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/503 (38%), Positives = 305/503 (60%), Gaps = 37/503 (7%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR-DLVSWTTLIQ 195
           +QVHA  +KT    ++     L R+  VC    + H      +  + Q+ +   W + ++
Sbjct: 45  RQVHAQIIKTNAPLSIL---PLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLK 101

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           A  + D P +AI+ F+ + Q ++ PD      VL AC  L DLS G  +H  +    F  
Sbjct: 102 ALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFR- 160

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN--------------------- 294
             ++++ N ++ +Y  CG +  AR +F++MP ++VV+WN                     
Sbjct: 161 -SNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSR 219

Query: 295 ----------SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
                     SMIAG    G+ KEA+ +F +M+  G+K ++ T+V VL +CA++G L+LG
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLG 279

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
             +H Y +++    +  I N L+DMY KCG +++A  VF  M+ R V S++AMI GLA+H
Sbjct: 280 MRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMH 339

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G+A +AL +FS+MSQVGIEP+ VTF+G+L ACSH GL+ EG + F  M+R Y + PQ EH
Sbjct: 340 GRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEH 399

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           YGCMVDL  RAGL+ EA + I +MP+ P+  VWGALLGAC++H  VE+AE  +++L+  +
Sbjct: 400 YGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELD 459

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           P  DG Y++++NIY+   RW++  ++RK MK+R+VKKTPG S + V G  +EF  G++SH
Sbjct: 460 PLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESH 519

Query: 585 PKTLEIYKLLDEIMHQSKNHGYI 607
           P T +I++  +E++ + +  GY+
Sbjct: 520 PDTEQIFQRWEELLEEMRLKGYV 542



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 199/390 (51%), Gaps = 49/390 (12%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII-----SLSRGNEI-ENLSLQNPQVY 84
           L +  S  +L+Q HA IIKT +P     +    ++     S     +I + +  Q P+ +
Sbjct: 35  LRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETF 94

Query: 85  LYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           ++N  ++ L+  + P++AI L+  +    + P+T+T   VL+AC     L  G+ +H   
Sbjct: 95  VWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVV 154

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------------------------- 176
            K    SN+Y+ N ++ LYA CG +     LF                            
Sbjct: 155 EKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAY 214

Query: 177 --FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
             F + P  +R++ SWT++I  YV+     EAI  F  M +A ++ + + +V VL+AC+ 
Sbjct: 215 DLFSRMP--ERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACAD 272

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           LG L LG++IH Y   N      +V I N LIDMY+KCG +  A KVF+EM  + VVSW+
Sbjct: 273 LGALDLGMRIHEY--SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWS 330

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           +MI GL   G+ +EAL +F  M  +G++P+  T + +L++C+++G +  G+     + ++
Sbjct: 331 AMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD 390

Query: 355 HINTDGFIGN-----ALVDMYAKCGRIDQA 379
           +    G I        +VD+ ++ G + +A
Sbjct: 391 Y----GIIPQIEHYGCMVDLLSRAGLLHEA 416



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 124/261 (47%), Gaps = 15/261 (5%)

Query: 90  IQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           +QC       EAI L+ +M   G+  N  T+  VL AC    +L +G ++H YS +    
Sbjct: 236 VQC---GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFK 292

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
            NV + NTL+ +Y  CG ++   K+F        +R +VSW+ +I          EA+  
Sbjct: 293 RNVRISNTLIDMYVKCGCLEEACKVF----EEMEERTVVSWSAMIGGLAMHGRAEEALRL 348

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F DM Q  + P+G+  + +L ACS +G +S G +    +T + + + P +  +  ++D+ 
Sbjct: 349 FSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD-YGIIPQIEHYGCMVDLL 407

Query: 270 LKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
            + G +  A +    MP+K N V W +++         + A +  + +  L    D + +
Sbjct: 408 SRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYV 467

Query: 329 VCVLNSCANIGWLELGKWVHT 349
           V      +NI + E G+W  T
Sbjct: 468 V-----LSNI-YAEAGRWEDT 482


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/536 (36%), Positives = 305/536 (56%), Gaps = 41/536 (7%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L P+  TL  +L AC    +L+ G+QVH +S++  L+ +V+V N L+ +YA C  +   +
Sbjct: 230 LRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEAN 289

Query: 173 K-------------------------------LFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           K                               LF   Q    + D+++W+ +I  Y +  
Sbjct: 290 KVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKG 349

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS----- 256
           +  EA+  F  M    L P+ + L  +LS C+ +G L  G + H Y+  N  NL+     
Sbjct: 350 HGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKE 409

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFD--EMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
            D+ + N LIDMY KC +   AR +FD  E   KNVV+W  MI G    G+  +AL +F 
Sbjct: 410 DDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFA 469

Query: 315 RM--QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG-FIGNALVDMYA 371
           ++  Q   LKP+ FTL C L +CA +G L LG+ +H Y  +N   ++  ++GN L+DMY+
Sbjct: 470 QIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYS 529

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           K G ID A  VF +MK R+V S+T+++ G  +HG+  +AL +F +M ++G   D +TF+ 
Sbjct: 530 KSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLV 589

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           VL ACSH+G+V++G  +F DM + + + P  EHY CMVDL GRAG + EA++LIK+M + 
Sbjct: 590 VLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSME 649

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P A VW ALL A +IHA +EL E     L     E DG+Y L++N+Y++  RWK+  ++R
Sbjct: 650 PTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIR 709

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             MK   ++K PGCS ++       F  GD+SHP++ +IY LL +++ + K+ GY+
Sbjct: 710 SLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYV 765



 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 153/489 (31%), Positives = 241/489 (49%), Gaps = 63/489 (12%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           + +  Y +M   G LP+ YT P+VLKAC +  SLR G  VHA      L SNV++ N+++
Sbjct: 110 DTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIV 169

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ---A 216
            +Y  CG +   H++F      + + D+VSW +++ AYV+      A+   F M      
Sbjct: 170 AMYGRCGALDDAHQMFDEVLERKIE-DIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSL 228

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            LRPD + LV +L AC+ +  L  G ++H +   N   L  DVF+ NAL+ MY KC  + 
Sbjct: 229 KLRPDAITLVNILPACASVFALQHGKQVHGFSVRN--GLVDDVFVGNALVSMYAKCSKMN 286

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFK----------------------------- 307
            A KVF+ +  K+VVSWN+M+ G +  G F                              
Sbjct: 287 EANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYA 346

Query: 308 ------EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN---- 357
                 EALD+FR+MQ  GL+P+  TL  +L+ CA++G L  GK  H Y+ KN +N    
Sbjct: 347 QKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWN 406

Query: 358 ---TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD--VYSYTAMIVGLAIHGKAWKALD 412
               D  + N L+DMYAKC     A  +F S++ +D  V ++T MI G A HG+A  AL 
Sbjct: 407 DKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALK 466

Query: 413 IFSEM--SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY----- 465
           +F+++   +  ++P+  T    L AC+  G +  G          Y L+ + E       
Sbjct: 467 LFAQIFKQKTSLKPNAFTLSCALMACARLGELRLG-----RQLHAYALRNENESEVLYVG 521

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
            C++D++ ++G I  A  +  +M L  +   W +L+    +H + E A  + + + +   
Sbjct: 522 NCLIDMYSKSGDIDAARAVFDNMKL-RNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGF 580

Query: 526 EGDGAYILM 534
             DG   L+
Sbjct: 581 AVDGITFLV 589



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 193/377 (51%), Gaps = 18/377 (4%)

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYT 119
           +D  +SL +  + E++ L    V  ++ +I   +   +  EA+ ++R+M + GL PN  T
Sbjct: 316 FDSALSLFKMMQEEDIKLD---VITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVT 372

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSN-------VYVFNTLMRLYAVCGLIKAVH 172
           L  +L  C    +L  G+Q HAY +K  L  N       + V N L+ +YA C   +   
Sbjct: 373 LASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVAR 432

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC--QANLRPDGMILVIVLS 230
            +F   +     +++V+WT +I  Y +     +A+  F  +   + +L+P+   L   L 
Sbjct: 433 SIFDSIEGK--DKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALM 490

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           AC++LG+L LG ++H Y   N  N S  +++ N LIDMY K G+I +AR VFD M ++NV
Sbjct: 491 ACARLGELRLGRQLHAYALRNE-NESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNV 549

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK-WVHT 349
           VSW S++ G    G+ +EAL +F +MQ LG   D  T + VL +C++ G ++ G  + H 
Sbjct: 550 VSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHD 609

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAW 408
            +    I         +VD+  + GR+++A  + ++M        + A++    IH    
Sbjct: 610 MVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIE 669

Query: 409 KALDIFSEMSQVGIEPD 425
                 S+++++G E D
Sbjct: 670 LGEYAASKLTELGAEND 686



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 207/470 (44%), Gaps = 91/470 (19%)

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W  LI+  VK+    + +  +  M +    PD      VL AC ++  L  G  +H  + 
Sbjct: 95  WNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVC 154

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM---PVKNVVSWNSMIAGLTHRGQF 306
            N   L  +VFI N+++ MY +CG +  A ++FDE+    ++++VSWNS++A     GQ 
Sbjct: 155 AN--GLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQS 212

Query: 307 KEALDIFRRMQ---GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
           + AL I  RM     L L+PD  TLV +L +CA++  L+ GK VH +  +N +  D F+G
Sbjct: 213 RTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVG 272

Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM-------------------------- 397
           NALV MYAKC ++++A  VF  +K +DV S+ AM                          
Sbjct: 273 NALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIK 332

Query: 398 ---------IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG--- 445
                    I G A  G  ++ALD+F +M   G+EP+ VT   +LS C+  G +  G   
Sbjct: 333 LDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQT 392

Query: 446 --------------------------------CKHFLDMSRVYN-LQPQTEH---YGCMV 469
                                           CK +     +++ ++ + ++   +  M+
Sbjct: 393 HAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMI 452

Query: 470 DLFGRAGLIREALDLI-----KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
             + + G   +AL L      +   L P+AF     L AC    ++ L   +    +R E
Sbjct: 453 GGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNE 512

Query: 525 PEGDGAYI--LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            E +  Y+   + ++YS       A  +   MK R V      SL+  YG
Sbjct: 513 NESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNV--VSWTSLMTGYG 560


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/600 (34%), Positives = 335/600 (55%), Gaps = 41/600 (6%)

Query: 19  FQQLSLLHQSPR-------LESSKSVGQL---KQFHAFIIKTGSPQHQTQILYDKIISLS 68
           F++++L  Q P        L +  SVG L   KQFH++ IK G       +  D ++  S
Sbjct: 340 FKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAG-------MTSDIVVEGS 392

Query: 69  RGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKAC 127
               + +L ++   +   +    C    + L ++  ++ +M I+G++PN +T P +LK C
Sbjct: 393 ----LLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTC 448

Query: 128 WQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDL 187
               +  +G+Q+H   +KT    NVYV + L+ +YA  G  K  H L  FR+    + D+
Sbjct: 449 TTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHG--KLDHALKIFRR--LKENDV 504

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
           VSWT +I  Y + D  TEA+  F +M    ++ D +     +SAC+ +  L  G +IH  
Sbjct: 505 VSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQ 564

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
              + +  S D+ I NAL+ +Y +CG +  A   FD++  K+ VSWNS+++G    G F+
Sbjct: 565 SCLSGY--SDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFE 622

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           EAL+IF +M   GL+ + FT    +++ ANI  + +GK +H  + K   +++  + NAL+
Sbjct: 623 EALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALI 682

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
            +YAKCG ID               S+ +MI G + HG  ++AL +F +M Q+ + P+ V
Sbjct: 683 TLYAKCGTIDDI-------------SWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHV 729

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           TFVGVLSACSH GLV+EG  +F  MS  +NL P+ EHY C+VDL GR+GL+  A   ++ 
Sbjct: 730 TFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEE 789

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
           MP+ PDA VW  LL AC +H  +++ E    +L+  EP+    Y+L++N+Y+   +W   
Sbjct: 790 MPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCR 849

Query: 548 LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            + R+ MK+R VKK PG S VEV    + F  GD++HP+   IY+ L  +  ++  +GY+
Sbjct: 850 DRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYV 909



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 237/491 (48%), Gaps = 50/491 (10%)

Query: 41  KQFHAFIIKTGSPQ-----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           KQ H  ++K G        +    LY +  +LS   +I +   Q  +V  YN +I  L+ 
Sbjct: 271 KQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS-YNSLISGLAQ 329

Query: 96  ANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
              +  A+AL+++M +    P+  T+  +L AC    +L  G+Q H+Y++K  + S++ V
Sbjct: 330 QGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVV 389

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
             +L+ LY  C  IK  H+ F                     Y ++D   ++   F  M 
Sbjct: 390 EGSLLDLYVKCSDIKTAHEFF-------------------LCYGQLDNLNKSFQIFTQMQ 430

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              + P+      +L  C+ LG   LG +IH  +    F    +V++ + LIDMY K G 
Sbjct: 431 IEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQF--NVYVSSVLIDMYAKHGK 488

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A K+F  +   +VVSW +MIAG T   +F EAL++F+ MQ  G+K D+      +++
Sbjct: 489 LDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISA 548

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA I  L+ G+ +H     +  + D  IGNALV +YA+CG++ +A+  F  +  +D  S+
Sbjct: 549 CAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSW 608

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            +++ G A  G   +AL+IF++M++ G+E +  TF   +SA ++   V  G K    M R
Sbjct: 609 NSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIG-KQIHGMIR 667

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIR------------------EALDL---IKSMPLVPD 493
                 +TE    ++ L+ + G I                   EAL L   +K + ++P+
Sbjct: 668 KTGYDSETEVSNALITLYAKCGTIDDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPN 727

Query: 494 AFVWGALLGAC 504
              +  +L AC
Sbjct: 728 HVTFVGVLSAC 738



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 195/412 (47%), Gaps = 38/412 (9%)

Query: 103 ALYREMLIKGLLPNTYTLPYVLKAC-WQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRL 161
            L+R ML K +  +      VL+ C   + S R  +Q+HA ++ +   S+ ++ N L+ L
Sbjct: 149 GLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDL 208

Query: 162 YAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221
           Y   G + +  K+F   +     RD VSW  +I    +  Y  EA+L F   CQ      
Sbjct: 209 YFKNGFLSSAKKVFENLK----ARDSVSWVAMISGLSQNGYEEEAMLLF---CQ------ 255

Query: 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
                IVLSAC+K+     G ++H  +    F  S + ++ NAL+ +Y + GN+ SA ++
Sbjct: 256 -----IVLSACTKVEFFEFGKQLHGLVLKQGF--SSETYVCNALVTLYSRSGNLSSAEQI 308

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           F  M  ++ VS+NS+I+GL  +G    AL +F++M     KPD  T+  +L++CA++G L
Sbjct: 309 FHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGAL 368

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
             GK  H+Y  K  + +D  +  +L+D+Y KC  I  A   F      D  +        
Sbjct: 369 PNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLN-------- 420

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
                  K+  IF++M   GI P++ T+  +L  C+  G  + G +    + +    Q  
Sbjct: 421 -------KSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKT-GFQFN 472

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
                 ++D++ + G +  AL + + +    D   W A++     H K   A
Sbjct: 473 VYVSSVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAGYTQHDKFTEA 523



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 113/274 (41%), Gaps = 48/274 (17%)

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LID YL  G++  A  VFDEMP++++  WN +               +FRRM    ++ D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 325 DFTLVCVLNSCA-NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           +     VL  C+ N       + +H     +   +  FI N L+D+Y K G +  A  VF
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
            ++K RD  S+ AMI GL+ +G   +A+ +F ++              VLSAC+     E
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFE 268

Query: 444 EG------------------CKHFLDM-SRVYNLQPQTEHYGCM-----------VDLFG 473
            G                  C   + + SR  NL    + + CM           +    
Sbjct: 269 FGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLA 328

Query: 474 RAGLIREALDLIKSMPL---VPDAFVWGALLGAC 504
           + G I  AL L K M L    PD     +LL AC
Sbjct: 329 QQGYINRALALFKKMNLDCQKPDCVTVASLLSAC 362


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/589 (33%), Positives = 335/589 (56%), Gaps = 18/589 (3%)

Query: 28  SPRLESSKSVGQLK---QFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENL-----SL 78
           S  L +  S+G L+   Q H+++ K G       I+   ++ L  +  ++E       S 
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISS--DYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 79  QNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
               V L+N ++      N L ++  L+ +M   G+ PN +T P +L+ C  ++ + +G+
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           Q+H+ S+KT   S++YV   L+ +Y+  G ++   ++    +    ++D+VSWT++I  Y
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK----EKDVVSWTSMIAGY 421

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           V+ +   +A+ +F +M +  + PD + L   +S C+ +  +  G++IH  I  + +  S 
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGY--SG 479

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           DV I NAL+++Y +CG I  A   F+E+  K+ ++WN +++G    G  +EAL +F RM 
Sbjct: 480 DVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMD 539

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             G+K + FT V  L++ AN+  ++ GK +H  + K   + +  +GNAL+ +Y KCG  +
Sbjct: 540 QSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFE 599

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F  M  R+  S+  +I   + HG+  +ALD+F +M + GI+P++VTF+GVL+ACS
Sbjct: 600 DAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           H GLVEEG  +F  MS  Y ++P+ +HY C++D+FGRAG +  A   I+ MP+  DA VW
Sbjct: 660 HVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVW 719

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
             LL ACK+H  +E+ E   ++L+  EP    +Y+L++N Y+   +W    ++RK M++R
Sbjct: 720 RTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDR 779

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            V+K PG S +EV    + F  GD+ HP   +IY  L  I  +    GY
Sbjct: 780 GVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGY 828



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 213/414 (51%), Gaps = 13/414 (3%)

Query: 93  LSNANPLEAIALYREMLIK--GLLPNTYTLPYVLKAC-WQSQSLRVGQQVHAYSMKTALL 149
           L++ +P + ++L+ +   +  GL P  +     L+AC    +  +V  ++HA ++   L 
Sbjct: 17  LAHEDPAKVLSLFADKARQHGGLGPLDFAC--ALRACRGNGRRWQVVPEIHAKAVTRGLG 74

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
               V N L+ LY+  GL+    ++F       + RD VSW  ++  Y +     EA+  
Sbjct: 75  KYRIVGNLLIDLYSKNGLVLPARRVFE----ELSARDNVSWVAMLSGYAQNGLGEEALGL 130

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           +  M +A + P   +L  VLS+C+K    + G  IH     + F    ++F+ NA+I +Y
Sbjct: 131 YRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGF--CSEIFVGNAVITLY 188

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
           L+CG+   A +VF +MP ++ V++N++I+G    G  + AL+IF  MQ  GL PD  T+ 
Sbjct: 189 LRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTIS 248

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            +L +CA++G L+ G  +H+YL K  I++D  +  +L+D+Y KCG ++ A  +F S    
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT 308

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           +V  +  M+V         K+ ++F +M   GI P++ T+  +L  C+    ++ G +  
Sbjct: 309 NVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG-EQI 367

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
             +S     +      G ++D++ + G + +A  +++ M    D   W +++  
Sbjct: 368 HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAG 420


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/630 (34%), Positives = 343/630 (54%), Gaps = 55/630 (8%)

Query: 17  NTFQQLSLLHQS-PRLESSKSVGQLKQFHAFIIKTGSPQHQ---TQILYDKIISLSRGNE 72
           NT + L + H     LES  S  +L Q HA +  TG   H+   +++L    +S      
Sbjct: 27  NTNRNLVVTHPLLSLLESCASFRRLLQLHALLTVTGLAAHRFPASRLLAFCALSTPPRLA 86

Query: 73  IENLSLQ----NPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKA- 126
                L      P  Y+   +++    A  P  A+ L+R ++   L  +  T  + +KA 
Sbjct: 87  HAAAILARASPGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAA 146

Query: 127 -----CWQSQSLRVGQQVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
                     +   G+ +H  ++K   +  +V V N L+  YA    +    K+F   + 
Sbjct: 147 AAAAESEHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFD--EM 204

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLS 239
           P+  RD+VSWTTL+  Y +     EA   F  M     +RP+ + LV  +SA  ++G L+
Sbjct: 205 PE--RDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLA 262

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD---------------- 283
            GI +H+Y+T+    ++  V + NAL+DM+ KCG +  AR+VFD                
Sbjct: 263 FGIMLHKYVTEG--GVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNA 320

Query: 284 ---------------EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
                          +MP +NVVSW+ MIA  +   Q +EA+ +FR M   G+ P D TL
Sbjct: 321 YAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATL 380

Query: 329 VCVLNSCANIGWLELGKWVH-TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           V VL++CA +G L+LG+W++  Y+  N I     +GNAL+DM+AKCG + +A  +F  M 
Sbjct: 381 VSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMA 440

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            R+V S+  MI+  A+HG++ +A+ +F ++    I PD++TF+G+L++CSH+GLV EG +
Sbjct: 441 ERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRR 500

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           +F +M   Y ++P+ EHY CM+DL G+ GL+ EA ++ + MP+  D   WGALL AC++H
Sbjct: 501 YFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMH 560

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
             VE+   V + LV  +P   G Y+LM+ IY+SKN+W +   LR  M++R VKK PGCS 
Sbjct: 561 GNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSS 620

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           +EV G+F++F   D SH  + EIY  L  I
Sbjct: 621 IEVEGKFHDFLVADVSHACSEEIYSALKNI 650


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/573 (35%), Positives = 333/573 (58%), Gaps = 57/573 (9%)

Query: 44  HAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL-----QNPQVYLYNFIIQCLSNA-N 97
           +A ++KT + Q    ++   I +LS  N ++   L     + P V++YN +I+    +  
Sbjct: 2   YAVMVKTNTNQ-DCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P++A+ LY +ML   + P +YT P ++KAC     LR  + VH +  +    S+V+V  +
Sbjct: 61  PVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTS 120

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+  Y+  G I+   ++F   + P+  RD+ +WTT++   V+                  
Sbjct: 121 LVDFYSSMGRIEESVRVFD--EMPE--RDVFAWTTMVSGLVR------------------ 158

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD--VFIHNALIDMYLKCGNI 275
                            +GD+S   ++        F++ PD  +   N LID Y +   +
Sbjct: 159 -----------------VGDMSSAGRL--------FDMMPDRNLATWNTLIDGYARLREV 193

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A  +F++MP ++++SW +MI   +   +F+EAL +F  M   G+ PD+ T+  V+++C
Sbjct: 194 DVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISAC 253

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A++G L+LGK +H Y+ ++  N D +IG+AL+DMYAKCG +D++  +F  ++ ++++ + 
Sbjct: 254 AHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWN 313

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           ++I GLA+HG A +AL +F +M +  I+P+ VTFV VLSAC+HAGL+EEG K F  M+R 
Sbjct: 314 SVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRD 373

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           +++ P  EHYGCMVDL  +AGL+ EAL LI++M L P+A +WGALL  CK+H  +E+A++
Sbjct: 374 HSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQV 433

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV-KKTPGCSLVEVYGEF 574
               L+  EP   G Y L+ N+ +  NRW EA K+R  MKE+ V K+ PG S +E+  + 
Sbjct: 434 AANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQV 493

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           ++F   DKSH  + EIY LL E+  Q K  GY+
Sbjct: 494 HQFAASDKSHAASDEIYSLLAELDGQMKLAGYV 526



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 42/247 (17%)

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           ++  + K + N D ++ N  +   +   R+D A   +  M+  +V+ Y AMI G     +
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSAC---SHAGLVEEGCKHFLDMSRVYNLQPQTE 463
             +AL+++ +M +  + P   TF  ++ AC   S     E    H        ++  QT 
Sbjct: 61  PVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTS 120

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMP----------------------------LVPDA- 494
               +VD +   G I E++ +   MP                            ++PD  
Sbjct: 121 ----LVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRN 176

Query: 495 -FVWGALLGACKIHAKVELAEIVMENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRK 552
              W  L+       +V++AE++   +    P  D  ++  M N YS   R++EAL +  
Sbjct: 177 LATWNTLIDGYARLREVDVAELLFNQM----PARDIISWTTMINCYSQNKRFREALGVFN 232

Query: 553 KMKERKV 559
           +M +  +
Sbjct: 233 EMAKHGI 239


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/463 (42%), Positives = 275/463 (59%), Gaps = 39/463 (8%)

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
           F Q P       +  ++I+ Y   + P +AIL +  M    L PD      +  +C   G
Sbjct: 35  FNQIPNPTT--FTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---G 89

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW--- 293
            L  G ++H + T   F  + D +I N L++MY  CG + SARKVFD+M  K+VVSW   
Sbjct: 90  VLCEGKQLHCHSTKLGF--ASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATM 147

Query: 294 -----------------------------NSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
                                        N MI G      ++EAL +F  MQ  G+K D
Sbjct: 148 IGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGD 207

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             T+  +L +C ++G LELGKW+H Y++K  I  D  +G ALVDMYAKCG I+ A  VF+
Sbjct: 208 KVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQ 267

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            M  +DV ++TA+IVGLA+ G+  KAL++F EM    ++PD +TFVGVL+ACSHAGLV E
Sbjct: 268 EMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNE 327

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G  +F  M   Y +QP  EHYGCMVD+ GRAG I EA DLI++MP+ PD FV   LL AC
Sbjct: 328 GIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSAC 387

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           +IH  + +AE   + L+  +P+  G Y+L++NIYSS   W+ A K+R+ M ER +KK PG
Sbjct: 388 RIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPG 447

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           CS +EV G  +EF KGD SHP++ EIY+ LD++M + K+ GY+
Sbjct: 448 CSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYV 490



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 186/363 (51%), Gaps = 44/363 (12%)

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + NP  +  N II+  +N N P +AI  Y+ M+++GL P+ +T P + K+C     L  G
Sbjct: 38  IPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEG 94

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+H +S K    S+ Y+ NTLM +Y+ CG + +  K+F         + +VSW T+I A
Sbjct: 95  KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFD----KMVNKSVVSWATMIGA 150

Query: 197 YVKMDYPTEAI-------------------------------LSFFDMCQ-ANLRPDGMI 224
           Y + D P EAI                               LS F+  Q + ++ D + 
Sbjct: 151 YAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVT 210

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           +  +L AC+ LG L LG  +H YI      +  DV +  AL+DMY KCG+I SA +VF E
Sbjct: 211 MASLLIACTHLGALELGKWLHVYIEKEKIEV--DVALGTALVDMYAKCGSIESAMRVFQE 268

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           MP K+V++W ++I GL   GQ  +AL++F  MQ   +KPD  T V VL +C++ G +  G
Sbjct: 269 MPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEG 328

Query: 345 -KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-CRDVYSYTAMIVGLA 402
             + ++  +K  I         +VDM  + GRI +A  + ++M    D +    ++    
Sbjct: 329 IAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACR 388

Query: 403 IHG 405
           IHG
Sbjct: 389 IHG 391



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 37/261 (14%)

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G++P AR VF+++P     + NS+I G T++   ++A+  ++ M   GL PD FT   + 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            SC   G L  GK +H +  K    +D +I N L++MY+ CG +  A  VF  M  + V 
Sbjct: 86  KSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 142

Query: 393 SYTAMIVGLA---------------------------IHGKA-----WKALDIFSEMSQV 420
           S+  MI   A                           I+G        +AL +F+EM   
Sbjct: 143 SWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 202

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
           G++ D+VT   +L AC+H G +E G K          ++        +VD++ + G I  
Sbjct: 203 GVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIES 261

Query: 481 ALDLIKSMPLVPDAFVWGALL 501
           A+ + + MP   D   W AL+
Sbjct: 262 AMRVFQEMP-EKDVMTWTALI 281


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/607 (36%), Positives = 332/607 (54%), Gaps = 76/607 (12%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEI---ENLSL- 78
           S L++S  L   K++ QLKQ H  I K G  Q  + +   K+++   G EI   E+L   
Sbjct: 26  SCLNES--LRCCKTLNQLKQLHCQITKNGLDQIPSTL--TKLVNA--GAEIASPESLDYA 79

Query: 79  ------------QNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLK 125
                        +  +++ N +I+  S+A    EAI LY  ML+ G+ PN YT P+VL 
Sbjct: 80  RKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLS 139

Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
            C +  +   G QVH   +K  L  +V++ N L+  YA CG +   HK+F       ++R
Sbjct: 140 GCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFE----GMSER 195

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           ++VSWT+LI  Y + D P EA+  FF+M            V+V                 
Sbjct: 196 NVVSWTSLICGYARGDRPKEAVSLFFEMLNK---------VMV----------------- 229

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
                            NAL+DMY+KCG I +A+++FDE   +N+V +N++++    +G 
Sbjct: 230 -----------------NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGL 272

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK-----WVHTYLDKNHINTDG 360
            +EAL I   M   G +PD  T++  +++ A +  L  GK     WVHTY++KN I  D 
Sbjct: 273 AREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDM 332

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            +  ALVDM+A+CG    A  VF  M  RDV ++TA I  +A+ G    A  +F++M   
Sbjct: 333 RLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQ 392

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
           G++PD V FV VL+ACSH G VE+G  H   +   + + PQ EHYGCMVDL GRAGL+RE
Sbjct: 393 GVKPDVVLFVQVLTACSHGGQVEQGL-HIFSLMEDHGISPQIEHYGCMVDLLGRAGLLRE 451

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540
           A DLIKSMP+ P+  VWG+LL AC++H  VE+A    E +    P+  G ++L++NIY+S
Sbjct: 452 AFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYAS 511

Query: 541 KNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
             +W +  ++R  ++E+ V+K PG S V+V G  +EF  GD+SHP+   I  +L E+  +
Sbjct: 512 AGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCR 571

Query: 601 SKNHGYI 607
             + G+I
Sbjct: 572 FSDAGHI 578


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/526 (38%), Positives = 308/526 (58%), Gaps = 14/526 (2%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLE---AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
           LQ   + L++ +I   S    L    +   YR M   G++P+ +T P +LKA ++   LR
Sbjct: 62  LQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFK---LR 118

Query: 135 VGQ--QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
                Q HA+ +K  L S+ +V N+L+  Y+  GL     +LF   +     +D+V+WT 
Sbjct: 119 DSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAE----DKDVVTWTA 174

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           +I  +V+    +EA++ F +M +  +  + M +V VL A  K+ D+  G  +H    +  
Sbjct: 175 MIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETG 234

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
             +  DVFI ++L+DMY KC     A+KVFDEMP +NVV+W ++IAG      F + + +
Sbjct: 235 -RVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLV 293

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F  M    + P++ TL  VL++CA++G L  G+ VH Y+ KN I  +   G  L+D+Y K
Sbjct: 294 FEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVK 353

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           CG +++A  VF  +  ++VY++TAMI G A HG A  A D+F  M    + P+EVTF+ V
Sbjct: 354 CGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAV 413

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           LSAC+H GLVEEG + FL M   +N++P+ +HY CMVDLFGR GL+ EA  LI+ MP+ P
Sbjct: 414 LSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEP 473

Query: 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552
              VWGAL G+C +H   EL +     +++ +P   G Y L+ N+YS    W E  ++RK
Sbjct: 474 TNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRK 533

Query: 553 KMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP-KTLEIYKLLDEI 597
           +MK+++V K+PG S +EV G+  EF   D   P ++ ++YK LD +
Sbjct: 534 QMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTV 579


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/565 (37%), Positives = 325/565 (57%), Gaps = 24/565 (4%)

Query: 24  LLHQS---PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--- 77
           ++HQ+     L   KS+ +LK+ H  I+ T  P  ++ I   K+I     +E  +++   
Sbjct: 1   MIHQNTILSLLAKCKSMRELKKLHGLIVTT--PTIKSIIPLSKLIDFCVDSEFGDINYAD 58

Query: 78  -----LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
                + NP VY++N +I+   N+ NP  ++ LYR+M+  G  P+ +T P+VLKAC    
Sbjct: 59  LVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIA 118

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
               G+ +H+  +K+   ++ Y    L+ +Y  C  +K+  K+F        + ++V+WT
Sbjct: 119 DQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFD----NIPKWNVVAWT 174

Query: 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
            LI  YVK + P EA+  F DM   N+ P+ + +V  L AC+   D+  G  +H+ I   
Sbjct: 175 CLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKA 234

Query: 252 HFN-----LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
            ++      + ++ +  A+++MY KCG +  AR +F++MP +N+VSWNSMI       + 
Sbjct: 235 GYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERH 294

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
           +EALD+F  M   G+ PD  T + VL+ CA+   L LG+ VH YL K  I TD  +  AL
Sbjct: 295 QEALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATAL 354

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ-VGIEPD 425
           +DMYAK G +  A  +F S++ +DV  +T+MI GLA+HG   +AL +F  M +   + PD
Sbjct: 355 LDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPD 414

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
            +T++GVL ACSH GLVEE  KHF  M+ +Y + P  EHYGCMVDL  RAG  REA  L+
Sbjct: 415 HITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLM 474

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
           ++M + P+  +WGALL  C+IH  V +A  V   L   EP   G +IL++NIY+   RW+
Sbjct: 475 ETMTVQPNIAIWGALLNGCQIHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKAGRWE 534

Query: 546 EALKLRKKMKERKVKKTPGCSLVEV 570
           E    RK MK +++ KT G S VE+
Sbjct: 535 EVNVTRKVMKHKRITKTIGHSSVEM 559


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/578 (35%), Positives = 325/578 (56%), Gaps = 54/578 (9%)

Query: 64  IISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYV 123
           +I  SR     NLS  +   +L N   +   N  P   +   R++L        + L  +
Sbjct: 1   MIGFSR-----NLSTVSKLSHLQNLQTRGSPNFIPFPQLQHQRKLL-------EWRLMSI 48

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           L  C     ++   QVHA+ ++  L    YV   L+R+     +    + L  F Q    
Sbjct: 49  LHDCTLFSQIK---QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYP 105

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
              L  WT +I+ Y      +E+   +  M +  + P       +  AC    ++ LG +
Sbjct: 106 NPFL--WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQ 163

Query: 244 IH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM----------------- 285
           +H + I    F  + D+++ N++ID+Y+KCG +  ARKVFDEM                 
Sbjct: 164 VHAQTILIGGF--ASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAK 221

Query: 286 --------------PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
                         P+K++V+W +M+ G    G+ KEAL+ F++MQ +G++ D+ TL  V
Sbjct: 222 YGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDG--FIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
           +++CA +G ++   W+    +++     G   +G+AL+DMY+KCG  D+A+ VF  MK R
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           +V+SY++MI+G A+HG+A  AL +F +M +  I P++VTF+G+LSACSHAGLVE+G + F
Sbjct: 342 NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLF 401

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
             M + + + P  +HY CMVDL GRAG + EALDL+K+MP+ P+  VWGALLGAC+IH  
Sbjct: 402 AKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGN 461

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
            ++A+I    L + EP G G YIL++NIY+S  RW+E  KLRK ++E+  KK PGCS  E
Sbjct: 462 PDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFE 521

Query: 570 -VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
              GE ++F  GD +HP++ EI + L +++ + ++HGY
Sbjct: 522 GKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGY 559



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 194/417 (46%), Gaps = 63/417 (15%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQVYLYNFII 90
           Q+KQ HA II+ G    Q   +  K+I +    ++   S        +  P  +L+  +I
Sbjct: 57  QIKQVHAHIIRNG--LSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMI 114

Query: 91  QCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS-MKTAL 148
           +  +    L E+   Y  M   G+ P ++T   + KAC  + ++ +G+QVHA + +    
Sbjct: 115 RGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGF 174

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM-------- 200
            S++YV N+++ LY  CG +    K+F       ++RD+VSWT LI AY K         
Sbjct: 175 ASDLYVGNSMIDLYVKCGFLGCARKVF----DEMSERDVVSWTELIVAYAKYGDMESASG 230

Query: 201 -----------------------DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
                                    P EA+  F  M    +  D + L  V+SAC++LG 
Sbjct: 231 LFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGA 290

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           +     I      + F  S +V + +ALIDMY KCG+   A KVF+ M  +NV S++SMI
Sbjct: 291 VKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMI 350

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
            G    G+   AL +F  M    ++P+  T + +L++C++ G +E G+ +   ++K    
Sbjct: 351 LGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEK---- 406

Query: 358 TDGFIGNA--------LVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
              F G A        +VD+  + G +++A  + ++M    +   + A++    IHG
Sbjct: 407 ---FFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHG 460


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/538 (35%), Positives = 296/538 (55%), Gaps = 62/538 (11%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+ EML+ G+LP+  T+  ++  C + + L +G+++H Y +   L     + N L+
Sbjct: 217 EALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLV 276

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQA-----------------------------QRDLVSW 190
            +Y+ CG +   H L       +                              +R LVSW
Sbjct: 277 DMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSW 336

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
           TT++  YV+  Y  E++  F  M   N+ PD + LV VLSAC  L D  LG  +H +I  
Sbjct: 337 TTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVT 396

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ----- 305
             + +  D F+ NAL+D+Y KCG +  A + F+++P K+  SWNSM+ G    G      
Sbjct: 397 --YGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKAR 454

Query: 306 --------------------------FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
                                     F E+ +IF +MQ   +KPD  TL+ +L+SCA +G
Sbjct: 455 DFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVG 514

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L  G WV+ Y++KN I  D  +G AL+DMY KCG ++ A+ +F  +  ++V+ +TAM+ 
Sbjct: 515 ALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMA 574

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
             A+ G+A +A+D++ EM + G++PD VTF+ +L+ACSH GLV+EG K+F  +   YN+ 
Sbjct: 575 AYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNII 634

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P   HYGCMVDL GR G + E +  I+ MP+ PD  +W +L+ AC+ H  VELAE   + 
Sbjct: 635 PTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQ 694

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           L+  +P  +GA++L++NIY+   RW +  K+R K+ E  V K PG +++E  G  +EF
Sbjct: 695 LIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEF 752



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/550 (26%), Positives = 266/550 (48%), Gaps = 93/550 (16%)

Query: 31  LESSKSVGQLKQFHAFIIKTG---SPQHQTQIL--YDKIISLSRGNEIENLSLQNPQVYL 85
           L+S  ++ +    HA +I       P+  +Q+L     + +L   ++I + S   P+  +
Sbjct: 42  LKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYS-HEPESII 100

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +++  L    P E +  Y  M+ +G+L +  T  +++ AC ++  +++G +VH   +
Sbjct: 101 WNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRIL 160

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K     N  + N LM LY+ CG +K V +LF    H    RD++SW T+I  YV      
Sbjct: 161 KCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTH----RDVISWNTMISCYVLKGMYR 216

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EA+  F +M  + + PD + +V ++S C+KL DL +G ++H YI DN   +   +   N 
Sbjct: 217 EALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLL--NC 274

Query: 265 LIDMYLKCGN---------------------------------IPSARKVFDEMPVKNVV 291
           L+DMY KCG                                  I  AR++FD+M  +++V
Sbjct: 275 LVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLV 334

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           SW +M++G    G + E+L++F++M+   + PD+  LV VL++C ++   +LG+ VH ++
Sbjct: 335 SWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFI 394

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
               +  DGF+GNAL+D+YAKCG++D+A   F  + C+   S+ +M+ G    G   KA 
Sbjct: 395 VTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKAR 454

Query: 412 D-------------------------------IFSEMSQVGIEPDEVTFVGVLSACSHAG 440
           D                               IF +M    ++PD+ T + +LS+C+  G
Sbjct: 455 DFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVG 514

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYG-------CMVDLFGRAGLIREALDLIKSMPLVPD 493
            +  G           N+  +    G        ++D++G+ G +  A ++   + +  +
Sbjct: 515 ALNHGI--------WVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQI-IEKN 565

Query: 494 AFVWGALLGA 503
            FVW A++ A
Sbjct: 566 VFVWTAMMAA 575



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 224/473 (47%), Gaps = 51/473 (10%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK+C    ++R    +HA+ +   L+ +  + + ++        +   H++  +   P+
Sbjct: 41  LLKSC---SNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPE 97

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
           +    + W TL++  +K   P E +  ++ M    +  D      ++ AC K  D+ LG 
Sbjct: 98  S----IIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGS 153

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           ++H  I    F  +    ++N L+ +Y KCG +    ++F++M  ++V+SWN+MI+    
Sbjct: 154 EVHGRILKCGFGRNKS--LNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVL 211

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
           +G ++EALD+F  M   G+ PD+ T+V ++++CA +  LE+GK +H Y+  N +   G +
Sbjct: 212 KGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSL 271

Query: 363 GNALVDMYAKCGRIDQAFG---------------------------------VFRSMKCR 389
            N LVDMY+KCG++D+A G                                 +F  M  R
Sbjct: 272 LNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNER 331

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
            + S+T M+ G    G   ++L++F +M    + PDEV  V VLSAC H    + G +  
Sbjct: 332 SLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLG-RSV 390

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL-GACKIHA 508
                 Y +         ++DL+ + G + EAL   + +P    A  W ++L G C+   
Sbjct: 391 HAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLP-CKSAASWNSMLDGFCR-SG 448

Query: 509 KVELAEIVMENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
            V+ A      +    PE D  ++  M N Y   + + E+ ++  KM+   VK
Sbjct: 449 GVDKARDFFNKI----PEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVK 497


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/638 (35%), Positives = 348/638 (54%), Gaps = 55/638 (8%)

Query: 17  NTFQQLSLLHQS-PRLESSKSVGQLKQFHAFIIKTGSPQHQ---TQILYDKIISLSRGNE 72
           NT + L + H     LES  S  +  Q HA +  +G   H+   +++L     +LS    
Sbjct: 29  NTNRNLVVTHPLLALLESCASFPRFLQLHALLTVSGLAAHRFPASRLL--AFCALSTPPR 86

Query: 73  IENLSLQN-----PQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKA 126
           +++ +        P  Y+   +++    A  P  A AL+R ++ + L  +  TL + +KA
Sbjct: 87  VDHAAAILARASAPNAYMLATMMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKA 146

Query: 127 CW---QSQSLRVGQQVHAYSMKTA-LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
                +  S   G+ VH  ++K   +  +V V N L+  YA    +     LF   + P 
Sbjct: 147 AASEHEHHSPSGGEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFD--EMPD 204

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLG 241
             RD+VSWTTL+  Y +     EA   F  M  A  L+P+ + LV V+SA  ++G L+ G
Sbjct: 205 --RDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFG 262

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDM-------------------------------YL 270
             ++RY+ D     S  V + NALIDM                               Y 
Sbjct: 263 RMVYRYVADGGVGRS--VNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYA 320

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG++ SA ++FD+MP +N VSW+ MIA  +   Q +EA+ +F+ M   G++P +  LV 
Sbjct: 321 KCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVS 380

Query: 331 VLNSCANIGWLELGKWVH-TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
           VL++CA +G L+LG+W++  Y+          +GNA +D+YAKCG  D A  +F  M  R
Sbjct: 381 VLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAER 440

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           +V S+ +MI+  A+HG++ + L +F ++    I PDE+TF+G+LSACSH+GLV EG ++F
Sbjct: 441 NVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYF 500

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
            +M  +Y ++P++EHY CM+DL G+ GL+ EA ++ K MP+  D   WGALL AC+++  
Sbjct: 501 KEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGN 560

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           VE+ E   + LV+  P   G Y+LM+ IY+SKN+W +   LR  M+ER VKK PGCS +E
Sbjct: 561 VEIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIE 620

Query: 570 VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           V G+F+EF   D SH  + +IY  L  I    K  GY+
Sbjct: 621 VDGKFHEFLVADVSHVHSEDIYAALKNIYFHLKWEGYV 658


>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Brachypodium distachyon]
          Length = 593

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/526 (38%), Positives = 302/526 (57%), Gaps = 20/526 (3%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGL----LPNTYTLPYVLKACWQSQSLRV----- 135
           +N +I  L+ +  P  A   +  +L  G      P+ YTLP  LKAC +  +        
Sbjct: 71  FNALISHLTLSGEPSSAFRTFAALLAAGRGEPRRPDGYTLPATLKACARLGAGGDDGGLR 130

Query: 136 -GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
            G+QVHA + K   L  + V N L+ LY VCG      ++F       A RD+VSWT L+
Sbjct: 131 EGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFD----EMASRDVVSWTALV 186

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
            A+V+     EA++    M   ++ P+   L  VL AC +LG    G  +H +      +
Sbjct: 187 SAFVRGGRFAEALVLVGQM---DVVPNEGTLACVLVACGRLGAARAGKAVHGWYLRRESD 243

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           L   + + NA++DMY+KC  +  AR+VFD + V++V+SW  MI+GL       +AL++F 
Sbjct: 244 L--KLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFN 301

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            MQ   +KPD   L  VL++C ++G LE G+WVH Y+++  I  D  +G +LVDMYAKCG
Sbjct: 302 EMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCG 361

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            ++ +  +FR M  +++ S+ A+I G A+HG   +AL+ F  M   G+ P+EV+F+ VL 
Sbjct: 362 CLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLG 421

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           AC H+GLV+EG + F  M   Y L P  EHYG +VDL GRAGLI EA  + K+MP+ P  
Sbjct: 422 ACCHSGLVQEGLQLFESMKNSYKLSPWEEHYGSVVDLLGRAGLIHEAYSVTKAMPMRPAV 481

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
           F WGALL AC+ H +V+ ++ ++ ++   E    G Y L++NIY+  +RW +  ++R  M
Sbjct: 482 FTWGALLSACQAHRQVDFSQQILRHVHELESSESGVYALLSNIYAVNHRWADVKRVRGLM 541

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
            E+ ++K PG S++EV G+  EF  G K+H    EI  +L  +M Q
Sbjct: 542 SEKGLQKEPGSSVIEVNGKTSEFVVGQKNHKNVDEICAMLSILMEQ 587


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/578 (35%), Positives = 324/578 (56%), Gaps = 54/578 (9%)

Query: 64  IISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYV 123
           +I  SR     NLS  +   +L N   +   N  P   +   R++L        + L  +
Sbjct: 1   MIGFSR-----NLSTVSKLSHLQNLQTRGSPNFIPFPQLQHQRKLL-------EWRLMSI 48

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           L  C     ++   QVHA+ ++  L    YV   L+R+     +    + L  F Q    
Sbjct: 49  LHDCTLFSQIK---QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYP 105

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
              L  WT +I+ Y      +E+   +  M +  + P       +  AC    ++ LG +
Sbjct: 106 NPFL--WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQ 163

Query: 244 IH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM----------------- 285
           +H + I    F  + D+++ N++ID+Y+KCG +  ARKVFDEM                 
Sbjct: 164 VHAQTILIGGF--ASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAK 221

Query: 286 --------------PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
                         P K++V+W +M+ G    G+ KEAL+ F++MQ +G++ D+ TL  V
Sbjct: 222 YGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDG--FIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
           +++CA +G ++   W+    +++     G   +G+AL+DMY+KCG  D+A+ VF  MK R
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           +V+SY++MI+G A+HG+A  AL +F +M +  I P++VTF+G+LSACSHAGLVE+G + F
Sbjct: 342 NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLF 401

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
             M + + + P  +HY CMVDL GRAG + EALDL+K+MP+ P+  VWGALLGAC+IH  
Sbjct: 402 AKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGN 461

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
            ++A+I    L + EP G G YIL++NIY+S  RW+E  KLRK ++E+  KK PGCS  E
Sbjct: 462 PDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFE 521

Query: 570 -VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
              GE ++F  GD +HP++ EI + L +++ + ++HGY
Sbjct: 522 GKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGY 559



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 194/417 (46%), Gaps = 63/417 (15%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQVYLYNFII 90
           Q+KQ HA II+ G    Q   +  K+I +    ++   S        +  P  +L+  +I
Sbjct: 57  QIKQVHAHIIRNG--LSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMI 114

Query: 91  QCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS-MKTAL 148
           +  +    L E+   Y  M   G+ P ++T   + KAC  + ++ +G+QVHA + +    
Sbjct: 115 RGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGF 174

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM-------- 200
            S++YV N+++ LY  CG +    K+F       ++RD+VSWT LI AY K         
Sbjct: 175 ASDLYVGNSMIDLYVKCGFLGCARKVF----DEMSERDVVSWTELIVAYAKYGDMESASG 230

Query: 201 -----------------------DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
                                    P EA+  F  M    +  D + L  V+SAC++LG 
Sbjct: 231 LFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGA 290

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           +     I      + F  S +V + +ALIDMY KCG+   A KVF+ M  +NV S++SMI
Sbjct: 291 VKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMI 350

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
            G    G+   AL +F  M    ++P+  T + +L++C++ G +E G+ +   ++K    
Sbjct: 351 LGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEK---- 406

Query: 358 TDGFIGNA--------LVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
              F G A        +VD+  + G +++A  + ++M    +   + A++    IHG
Sbjct: 407 ---FFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHG 460


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/597 (35%), Positives = 335/597 (56%), Gaps = 16/597 (2%)

Query: 17  NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQI--LYDKIISLSRGN 71
           N F   S+++    L  S S G++   H ++IK G    P     +  +Y K+  L+   
Sbjct: 257 NEFSLSSMVNACTGLRDS-SRGKI--IHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313

Query: 72  EIENLSLQNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQS 130
            +    ++ P +  +N +I  C+ + +  +A+ L  +M   G+ PN +TL   LKAC   
Sbjct: 314 SVFE-KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGM 372

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
               +G+Q+H+  MK  + S+++V   L+ +Y+ C L++     F+       ++DL++W
Sbjct: 373 GLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL----PEKDLIAW 428

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
             +I  Y +     EA+  F +M +  +  +   L  +L + + L  + +  ++H     
Sbjct: 429 NAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVK 488

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
           + F+   D+++ N+LID Y KC ++  A ++F+E  + ++VS+ SMI      GQ +EAL
Sbjct: 489 SGFH--SDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEAL 546

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
            +F  MQ + LKPD F    +LN+CAN+   E GK +H ++ K     D F GN+LV+MY
Sbjct: 547 KLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMY 606

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           AKCG ID A   F  +  R + S++AMI GLA HG   +AL +F++M + G+ P+ +T V
Sbjct: 607 AKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLV 666

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
            VL AC+HAGLV E   +F  M  ++  +P  EHY CM+DL GRAG I EA++L+  MP 
Sbjct: 667 SVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPF 726

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
             +A VWGALLGA +IH  VEL     E L   EPE  G ++L+ NIY+S  +W+   ++
Sbjct: 727 EANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEV 786

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R+ M++ KVKK PG S +EV  + Y F  GD+SH ++ EIY  LDE+       GY+
Sbjct: 787 RRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYV 843



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 152/510 (29%), Positives = 256/510 (50%), Gaps = 44/510 (8%)

Query: 33  SSKSVGQLKQFHAFIIKTG---SPQHQTQI--LYDKIISLSRGNEIENLSLQNPQVYLYN 87
           ++KS+    Q HA I K+G    P  +  +  LY K  +     ++ + S +   V    
Sbjct: 68  TTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSA 127

Query: 88  FIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
            I     N     A+  + EM + G+  N +T   VLKAC   + LR+G+QVH   + + 
Sbjct: 128 LISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSG 187

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
              +V+V NTL+ +YA C       +L  F + P  +R++VSW  L   YV++D+  EA+
Sbjct: 188 FEGDVFVANTLVVMYAKCDEFLDSKRL--FDEIP--ERNVVSWNALFSCYVQIDFCGEAV 243

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F++M  + ++P+   L  +++AC+ L D S G  IH Y+    ++  P  F  NAL+D
Sbjct: 244 GLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP--FSANALVD 301

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY K G++  A  VF+++   ++VSWN++IAG       ++AL++  +M+  G+ P+ FT
Sbjct: 302 MYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFT 361

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           L   L +CA +G  ELG+ +H+ L K  + +D F+   LVDMY+KC  ++ A   F  + 
Sbjct: 362 LSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLP 421

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS---------- 437
            +D+ ++ A+I G + + +  +AL +F EM + GI  ++ T   +L + +          
Sbjct: 422 EKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQ 481

Query: 438 -HAGLVEEG-----------------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGL 477
            H   V+ G                 C H  D  R++      +   +  M+  + + G 
Sbjct: 482 VHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQ 541

Query: 478 IREALDL---IKSMPLVPDAFVWGALLGAC 504
             EAL L   ++ M L PD FV  +LL AC
Sbjct: 542 GEEALKLFLEMQDMELKPDRFVCSSLLNAC 571



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 200/389 (51%), Gaps = 8/389 (2%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P + +   +L  C  ++SLR G Q+HA+  K+ L  +  + N L+ LY+ C       KL
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
                 P    DLVSW+ LI  Y +      A+++F +M    ++ +      VL ACS 
Sbjct: 114 VDESSEP----DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           + DL +G ++H  +  + F    DVF+ N L+ MY KC     ++++FDE+P +NVVSWN
Sbjct: 170 VKDLRIGKQVHGVVVVSGFE--GDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWN 227

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           ++ +         EA+ +F  M   G+KP++F+L  ++N+C  +     GK +H YL K 
Sbjct: 228 ALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKL 287

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
             + D F  NALVDMYAK G +  A  VF  +K  D+ S+ A+I G  +H    +AL++ 
Sbjct: 288 GYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELL 347

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            +M + GI P+  T    L AC+  GL E G +    + ++ +++        +VD++ +
Sbjct: 348 GQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKM-DMESDLFVSVGLVDMYSK 406

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGA 503
             L+ +A      +P   D   W A++  
Sbjct: 407 CDLLEDARMAFNLLP-EKDLIAWNAIISG 434



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 172/358 (48%), Gaps = 18/358 (5%)

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM--DYPTEAILSFFDMCQA 216
           M+L+      K +H+  H    P  +        LIQ   +   D  T AIL+  D  + 
Sbjct: 1   MKLWRHHSFQKPLHQRLHLPFKPAPK--------LIQTVPQFSQDPQTTAILNLID--KG 50

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
           N  P  +    +LS C     L  G++IH +IT +   LS D  I N LI++Y KC N  
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKS--GLSDDPSIRNHLINLYSKCRNFG 108

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            ARK+ DE    ++VSW+++I+G    G    AL  F  M  LG+K ++FT   VL +C+
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            +  L +GK VH  +  +    D F+ N LV MYAKC     +  +F  +  R+V S+ A
Sbjct: 169 IVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNA 228

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRV 455
           +           +A+ +F EM   GI+P+E +   +++AC+       G   H   +   
Sbjct: 229 LFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLG 288

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           Y+  P + +   +VD++ + G + +A+ + + +   PD   W A++  C +H   E A
Sbjct: 289 YDWDPFSAN--ALVDMYAKVGDLADAISVFEKIKQ-PDIVSWNAVIAGCVLHEHHEQA 343


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/510 (38%), Positives = 286/510 (56%), Gaps = 34/510 (6%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L PNT     +L+ C   + L    Q+H   +K   + N    +TL+  YA   L+   +
Sbjct: 6   LPPNTEQTQALLERCSNMKEL---MQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAY 62

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
               F     +  + V W T+++AY   + P  A+L +  M   ++  +      +L AC
Sbjct: 63  TRVVFDS--ISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKAC 120

Query: 233 SKLGDLSLGIKIHRYITDNHFNL-----------------------------SPDVFIHN 263
           S L       +IH +I    F L                             + D+   N
Sbjct: 121 SALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWN 180

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
            +ID Y+K GN+  A K+F  MP KNV+SW +MI G    G  KEAL + ++M   G+KP
Sbjct: 181 IMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKP 240

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  TL C L++CA +G LE GKW+HTY++KN I  D  +G  L DMY KCG +++A  VF
Sbjct: 241 DSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVF 300

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             ++ + V ++TA+I GLAIHGK  +ALD F++M + GI P+ +TF  +L+ACSHAGL E
Sbjct: 301 SKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTE 360

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG   F  MS VYN++P  EHYGCMVDL GRAGL++EA + I+SMP+ P+A +WGALL A
Sbjct: 361 EGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNA 420

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C++H   EL + + + L+  +P+  G YI + +IY++   W + +++R ++K R +   P
Sbjct: 421 CQLHKHFELGKEIGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHP 480

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
           GCS + + G  +EF  GD SHP   EIY +
Sbjct: 481 GCSSITLNGVVHEFFAGDGSHPHIQEIYGM 510



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 216/435 (49%), Gaps = 50/435 (11%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SLQNPQ 82
           LE   ++ +L Q H  ++K G+ ++Q  +    ++S +R  E+ NL        S+ +P 
Sbjct: 17  LERCSNMKELMQIHGQLLKKGTIRNQLTV-STLLVSYAR-IELVNLAYTRVVFDSISSPN 74

Query: 83  VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
             ++N +++  SN+N P  A+ LY +ML   +  N+YT P++LKAC    +    QQ+HA
Sbjct: 75  TVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHA 134

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH------------------------- 176
           + +K      VY  N+L+R+YA+ G I++ H LF+                         
Sbjct: 135 HIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDM 194

Query: 177 ----FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
               F+  P  +++++SWTT+I  +V++    EA+     M  A ++PD + L   LSAC
Sbjct: 195 AYKIFQAMP--EKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSAC 252

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           + LG L  G  IH YI  N   + P   +   L DMY+KCG +  A  VF ++  K V +
Sbjct: 253 AGLGALEQGKWIHTYIEKNEIKIDP--VLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCA 310

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W ++I GL   G+ +EALD F +MQ  G+ P+  T   +L +C++ G  E GK +   + 
Sbjct: 311 WTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMS 370

Query: 353 KNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKA 410
             + I         +VD+  + G + +A     SM  + +   + A++    +H    K 
Sbjct: 371 SVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLH----KH 426

Query: 411 LDIFSEMSQVGIEPD 425
            ++  E+ ++ IE D
Sbjct: 427 FELGKEIGKILIELD 441


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/612 (33%), Positives = 326/612 (53%), Gaps = 44/612 (7%)

Query: 33  SSKSVGQLKQFHAFIIK----TGSPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           S KS  Q +Q HA ++K    +         +Y  I  L     + N ++  P    +  
Sbjct: 18  SIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFN-TIHFPPALAWKS 76

Query: 89  IIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           +I+C  S+  P +++  +  ML  GL P+    P VLK+C     L +G+ +H Y ++  
Sbjct: 77  VIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVG 136

Query: 148 LLSNVYVFNTLMRLYAVCGLIK--------------------------------AVHKLF 175
           L  ++Y  N LM +Y+    ++                                +V K+F
Sbjct: 137 LDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIF 196

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
                   ++DLVSW T+I    +     E +    +M  ANL+PD   L  VL   ++ 
Sbjct: 197 EM----MPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAEN 252

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
            D+S G +IH         L  D+++ ++LIDMY KC  +  + +VF  +  ++ +SWNS
Sbjct: 253 VDISRGKEIHGCSIRQ--GLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNS 310

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           +IAG    G F E L  FR+M    +KP  ++   ++ +CA++  L LGK +H Y+ +N 
Sbjct: 311 IIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNG 370

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
            + + FI ++LVDMYAKCG I  A  +F  M+ RD+ S+TAMI+G A+HG+A  A+++F 
Sbjct: 371 FDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFE 430

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           +M   GI+P+ V F+ VL+ACSH GLV+E  K+F  M+R + + P  EHY  + DL GRA
Sbjct: 431 QMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRA 490

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
           G + EA D I  M + P   +W  LL AC++H  +++AE V   ++  +P   GAYIL+ 
Sbjct: 491 GRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLA 550

Query: 536 NIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           NIYS+  RWKEA K R  M+   ++KTP CS +EV  + Y F  GD+SHP   +I + ++
Sbjct: 551 NIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAME 610

Query: 596 EIMHQSKNHGYI 607
            ++   +  GY+
Sbjct: 611 VLVELMEKEGYV 622



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 212/453 (46%), Gaps = 54/453 (11%)

Query: 107 EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
           E L+K LL N    P  +K+  +SQ+    QQ+HA  +K    S   +   L  +Y+   
Sbjct: 6   EALVKALLRN----PLSIKS--RSQA----QQLHAQVLKFQASSLCNLSLLLS-IYSHIN 54

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
           L+    +LF+    P A    ++W ++I+ Y     P +++ SF  M  + L PD  +  
Sbjct: 55  LLHDSLRLFNTIHFPPA----LAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFP 110

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY-------------LKCG 273
            VL +C+ L DL+LG  +H YI      L  D++  NAL++MY             L  G
Sbjct: 111 SVLKSCALLMDLNLGESLHGYII--RVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 274 NI-------------------PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
            +                    S RK+F+ MP K++VSWN++IAG    G ++E L + R
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            M G  LKPD FTL  VL   A    +  GK +H    +  ++ D ++ ++L+DMYAKC 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           R+  +  VF  +  RD  S+ ++I G   +G   + L  F +M    I+P   +F  ++ 
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           AC+H   +  G +    ++R             +VD++ + G IR A  +   M L  D 
Sbjct: 349 ACAHLTTLHLGKQLHGYITR-NGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL-RDM 406

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
             W A++  C +H +   A   +E   + E EG
Sbjct: 407 VSWTAMIMGCALHGQ---APDAIELFEQMETEG 436


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/584 (35%), Positives = 329/584 (56%), Gaps = 22/584 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYL 85
           L S K+  +L Q  A I+  G  +H   +  + I + SR   I +       +  P    
Sbjct: 19  LRSCKNYERLHQIQAQIVTHGL-EHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTAT 77

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N + +  L N +  + + L+ E+     +PN +T P ++K+C + + +R G++VH  + 
Sbjct: 78  WNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCAT 137

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K    SN +V  +L+ +Y+  G ++  +K+F        +R++V WT +I  Y+      
Sbjct: 138 KHGFKSNSFVATSLIDMYSKKGCVEDAYKVFG----EMHERNVVVWTAIINGYILCGDVV 193

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
                 FD+       D ++  +++S   +  +++      R + D   N   D    NA
Sbjct: 194 SG-RRLFDLAPER---DVVMWSVLISGYIESKNMAAA----RELFDKMPN--RDTMSWNA 243

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKP 323
           +++ Y   G +    KVFDEMP +NV SWN +I G    G F E L+ F+RM   G + P
Sbjct: 244 MLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIP 303

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           +DFTLV VL++C+ +G L++GKWVH Y +      + F+GN L+DMYAKCG I+ A  VF
Sbjct: 304 NDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVF 363

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             +  +D+ S+  +I GLAIHG A  AL +F  M   G EPD VTFVG+LSAC+H GLV+
Sbjct: 364 NCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVK 423

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           +G  +F  M   Y++ PQ EHYGCMVDL GRAGL+ +AL+ I+ MP+ PDA +W ALLGA
Sbjct: 424 DGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGA 483

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C+++  VE+AE+ ++ L+  EP     +++++NIY    R ++  +L+  M++   +K P
Sbjct: 484 CRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLP 543

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GCS++E      EF   D+ H +T  IY++L  +    ++HGY+
Sbjct: 544 GCSVIECNDSVVEFYSLDERHSETESIYRVLKGLTMLLRSHGYV 587


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/589 (33%), Positives = 335/589 (56%), Gaps = 18/589 (3%)

Query: 28  SPRLESSKSVGQLK---QFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENL-----SL 78
           S  L +  S+G L+   Q H+++ K G       I+   ++ L  +  ++E       S 
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISS--DYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 79  QNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
               V L+N ++      N L ++  L+ +M   G+ PN +T P +L+ C  ++ + +G+
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           Q+H+ S+KT   S++YV   L+ +Y+  G ++   ++    +    ++D+VSWT++I  Y
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK----EKDVVSWTSMIAGY 421

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           V+ +   +A+ +F +M +  + PD + L   +S C+ +  +  G++IH  I  + +  S 
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGY--SG 479

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           DV I NAL+++Y +CG I  A   F+EM +K+ ++ N +++G    G  +EAL +F RM 
Sbjct: 480 DVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMD 539

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             G+K + FT V  L++ AN+  ++ GK +H  + K   + +  +GNAL+ +Y KCG  +
Sbjct: 540 QSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFE 599

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F  M  R+  S+  +I   + HG+  +ALD+F +M + GI+P++VTF+GVL+ACS
Sbjct: 600 DAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           H GLVEEG  +F  MS  Y ++P+ +HY C++D+FGRAG +  A   I+ MP+  DA VW
Sbjct: 660 HVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVW 719

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
             LL ACK+H  +E+ E   ++L+  EP    +Y+L++N Y+   +W    ++RK M++R
Sbjct: 720 RTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDR 779

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            V+K PG S +EV    + F  GD+ HP   +IY  L  I  +    GY
Sbjct: 780 GVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGY 828



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 213/414 (51%), Gaps = 13/414 (3%)

Query: 93  LSNANPLEAIALYREMLIK--GLLPNTYTLPYVLKAC-WQSQSLRVGQQVHAYSMKTALL 149
           L++ +P + ++L+ +   +  GL P  +     L+AC    +  +V  ++HA ++   L 
Sbjct: 17  LAHEDPAKVLSLFADKARQHGGLGPLDFAC--ALRACRGNGRRWQVVPEIHAKAVTRGLG 74

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
               V N L+ LY+  GL+    ++F       + RD VSW  ++  Y +     EA+  
Sbjct: 75  KYRIVGNLLIDLYSKNGLVLPARRVFE----ELSARDNVSWVAMLSGYAQNGLGEEALGL 130

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           +  M +A + P   +L  VLS+C+K    + G  IH     + F    ++F+ NA+I +Y
Sbjct: 131 YRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGF--CSEIFVGNAVITLY 188

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
           L+CG+   A +VF +MP ++ V++N++I+G    G  + AL+IF  MQ  GL PD  T+ 
Sbjct: 189 LRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTIS 248

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            +L +CA++G L+ G  +H+YL K  I++D  +  +L+D+Y KCG ++ A  +F S    
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT 308

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           +V  +  M+V         K+ ++F +M   GI P++ T+  +L  C+    ++ G +  
Sbjct: 309 NVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG-EQI 367

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
             +S     +      G ++D++ + G + +A  +++ M    D   W +++  
Sbjct: 368 HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAG 420


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/518 (36%), Positives = 309/518 (59%), Gaps = 40/518 (7%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC--GLIKAVHKLFHFRQH 180
           +L+     ++L+   Q+HA ++ T + S+ +V + ++   A+   G I     LF+  + 
Sbjct: 38  ILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRK 97

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR-PDGMILVIVLSACSKLGDLS 239
           P    D+    TLI+AY     P +A++ + +M ++++  PD     ++L ACS++  L 
Sbjct: 98  P----DIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLR 153

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMY------------------------------ 269
           LG  IH ++       S +V + N L+ MY                              
Sbjct: 154 LGEAIHSHVFK--LGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGG 211

Query: 270 -LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
            LKCG   SAR++F+ MP ++VVSW+ MI G     +FKE L +F+ M G  ++P++  L
Sbjct: 212 YLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVL 271

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
           V  L++CA++G +E G+W+  Y+++ ++     +G AL+DMY+KCG +++A  VF  MK 
Sbjct: 272 VNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKE 331

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           ++V +++AMI GLAI+G+   AL++FS+M   G++P+EVTF+G+L+ACSH+ LV+EGC  
Sbjct: 332 KNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSF 391

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M+ +Y L+P   H+ CMVDL+GRAG++ +A  +IKSMP  P++ +WGALL AC+IH 
Sbjct: 392 FHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHG 451

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
             EL E V + L+  +P   G Y+L++NIY++  RW    +LR+ M+ER+V KTPGCS +
Sbjct: 452 DTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFI 511

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           ++    +EF  GD SHP+   IY  L E+  + K  GY
Sbjct: 512 DLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGY 549



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 228/449 (50%), Gaps = 52/449 (11%)

Query: 3   SPLTVASGSRYNDINT--FQQLSLLHQSP---RLESSKSVGQLKQFHAFIIKTGSPQHQT 57
           SPL++ S S   + N        LL + P    L S K++  L Q HA  I TG      
Sbjct: 9   SPLSLPSQSNLQNQNPPWIPTPQLLCKYPILRHLSSCKTLKDLTQIHAQTITTGI--FSD 66

Query: 58  QILYDKIISLSRGNEIENLS--------LQNPQVYLYNFIIQCLS-NANPLEAIALYREM 108
             +  +I+S +  +   ++         ++ P +++ N +I+  + + NP++A+  Y EM
Sbjct: 67  NFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEM 126

Query: 109 LIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
               ++ P+ +T P +LKAC +  SLR+G+ +H++  K    S V V N L+++YA CGL
Sbjct: 127 TESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGL 186

Query: 168 IKAVHKLFH-----------------------------FRQHPQAQRDLVSWTTLIQAYV 198
           I++   +F                              F   P   RD+VSW+ +I  YV
Sbjct: 187 IESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPD--RDVVSWSVMINGYV 244

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +     E +  F DM    + P+  +LV  LSAC+ LG +  G  I RY+   +  L+  
Sbjct: 245 QESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLT-- 302

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           V +  ALIDMY KCG++  A +VF +M  KNV++W++MI GL   GQ K+AL++F +M+ 
Sbjct: 303 VRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEM 362

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
            G+KP++ T + +LN+C++   ++ G  + H+      +  +      +VD+Y + G +D
Sbjct: 363 QGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLD 422

Query: 378 QAFGVFRSMKCRDVYS-YTAMIVGLAIHG 405
           QA  V +SM  +   + + A++    IHG
Sbjct: 423 QAQTVIKSMPFKPNSAIWGALLNACRIHG 451


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/546 (35%), Positives = 303/546 (55%), Gaps = 45/546 (8%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+  +  M  +G + N YT    L AC     +  G Q+H+   K+  LS+VY+ + L+
Sbjct: 135 EALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALV 194

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ CG +    ++F         R++VSW +LI  Y +     EA+  F  M ++ + 
Sbjct: 195 DMYSKCGNVNDAQQVFD----EMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVE 250

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + L  V+SAC+ L  + +G ++H  +      L  D+ + NA +DMY KC  I  AR
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHARVVKMD-KLRNDIILSNAFVDMYAKCSRIKEAR 309

Query: 280 KVFDEMPVKNV-------------------------------VSWNSMIAGLTHRGQFKE 308
            +FD MP++NV                               VSWN++IAG T  G+ +E
Sbjct: 310 FIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEE 369

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI------NTDGFI 362
           AL +F  ++   + P  +T   +L +CA++  L LG   H ++ K+          D F+
Sbjct: 370 ALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFV 429

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           GN+L+DMY KCG +++ + VFR M  RD  S+ AMI+G A +G   +AL++F EM   G 
Sbjct: 430 GNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGE 489

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
           +PD +T +GVLSAC HAG VEEG  +F  M+R + + P  +HY CMVDL GRAG + EA 
Sbjct: 490 KPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAK 549

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
            +I+ MP+ PD+ +WG+LL ACK+H  + L + V E L   E    G Y+L++N+Y+   
Sbjct: 550 SIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELG 609

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI---MH 599
           +W +A+ +RK M++  V K PGCS +++ G  + F   DKSHP+  +I+ LLD +   M 
Sbjct: 610 KWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDKSHPRKKQIHSLLDILIAEMR 669

Query: 600 QSKNHG 605
           Q ++H 
Sbjct: 670 QKQDHA 675



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 203/432 (46%), Gaps = 77/432 (17%)

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH---------------------- 176
           VHA  +K+   + V++ N L+  YA CG ++   +LF                       
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 177 -------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
                  FR  P  +RD  +W +++  + + D   EA+  F  M +     +       L
Sbjct: 102 LDEADSLFRSMP--ERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGL 159

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSP---DVFIHNALIDMYLKCGNIPSARKVFDEMP 286
           SACS L D++ G++IH  I       SP   DV+I +AL+DMY KCGN+  A++VFDEM 
Sbjct: 160 SACSGLNDMNRGVQIHSLIAK-----SPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMG 214

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
            +NVVSWNS+I      G   EAL +F+ M    ++PD+ TL  V+++CA++  +++G+ 
Sbjct: 215 DRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQE 274

Query: 347 VHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI-- 403
           VH  + K + +  D  + NA VDMYAKC RI +A  +F SM  R+V + T+M+ G A+  
Sbjct: 275 VHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAA 334

Query: 404 -----------------------------HGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
                                        +G+  +AL +F  + +  + P   TF  +L 
Sbjct: 335 STKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILK 394

Query: 435 ACSHAGLVEEGCK-HFLDMSRVYNLQPQTEH----YGCMVDLFGRAGLIREALDLIKSMP 489
           AC+    +  G + H   +   +  Q   E        ++D++ + G + E   + + M 
Sbjct: 395 ACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM- 453

Query: 490 LVPDAFVWGALL 501
           +  D   W A++
Sbjct: 454 MERDCVSWNAMI 465



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 211/471 (44%), Gaps = 91/471 (19%)

Query: 2   ASPLTVASGSRYNDINTFQQL-SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL 60
           AS L+  SG   ND+N   Q+ SL+ +SP L        L   ++   K G+     Q+ 
Sbjct: 156 ASGLSACSG--LNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYS---KCGNVNDAQQV- 209

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTYT 119
           +D+              + +  V  +N +I C     P +EA+ +++ ML   + P+  T
Sbjct: 210 FDE--------------MGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVT 255

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSN-VYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           L  V+ AC    +++VGQ+VHA  +K   L N + + N  + +YA C  IK     F F 
Sbjct: 256 LASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEAR--FIFD 313

Query: 179 QHP-----------------------------QAQRDLVSWTTLIQAYVKMDYPTEAILS 209
             P                              A+R++VSW  LI  Y +     EA+  
Sbjct: 314 SMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSL 373

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP----DVFIHNAL 265
           F  + + ++ P       +L AC+ L DL LG++ H ++  + F        D+F+ N+L
Sbjct: 374 FCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSL 433

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           IDMY+KCG +     VF +M  ++ VSWN+MI G    G   EAL++FR M   G KPD 
Sbjct: 434 IDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDH 493

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
            T++ VL++C + G++E G+   + + ++                         FGV   
Sbjct: 494 ITMIGVLSACGHAGFVEEGRHYFSSMTRD-------------------------FGV--- 525

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
              RD   YT M+  L   G   +A  I  EM    ++PD V +  +L+AC
Sbjct: 526 APLRD--HYTCMVDLLGRAGFLEEAKSIIEEMP---VQPDSVIWGSLLAAC 571



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 178/371 (47%), Gaps = 46/371 (12%)

Query: 228 VLSACSKLGDLSLGIK-IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
           +L +C KL   ++ ++ +H  +  + F  S +VFI N LID Y KCG++   R++FD+MP
Sbjct: 25  LLDSCIKLKLSAIDVRCVHASVIKSGF--SNEVFIQNRLIDAYAKCGSLEDGRQLFDKMP 82

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRM------------------------------ 316
            +NV +WNS++ GLT  G   EA  +FR M                              
Sbjct: 83  QRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAM 142

Query: 317 -QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
               G   +++T    L++C+ +  +  G  +H+ + K+   +D +IG+ALVDMY+KCG 
Sbjct: 143 MHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGN 202

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           ++ A  VF  M  R+V S+ ++I     +G A +AL +F  M +  +EPDEVT   V+SA
Sbjct: 203 VNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISA 262

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP----LV 491
           C+    ++ G +    + ++  L+         VD++ +   I+EA  +  SMP    + 
Sbjct: 263 CASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIA 322

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
             + V G  + A    A++   ++   N+V +     G        Y+     +EAL L 
Sbjct: 323 ETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAG--------YTQNGENEEALSLF 374

Query: 552 KKMKERKVKKT 562
             +K   V  T
Sbjct: 375 CLLKRESVCPT 385



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 109/217 (50%), Gaps = 13/217 (5%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK------TAL 148
           N    EA++L+  +  + + P  YT   +LKAC     L +G Q H + +K      +  
Sbjct: 364 NGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGE 423

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             +++V N+L+ +Y  CG ++  + +F        +RD VSW  +I  + +  Y  EA+ 
Sbjct: 424 EDDIFVGNSLIDMYVKCGCVEEGYLVF----RKMMERDCVSWNAMIIGFAQNGYGNEALE 479

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F +M  +  +PD + ++ VLSAC   G +  G      +T + F ++P    +  ++D+
Sbjct: 480 LFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRD-FGVAPLRDHYTCMVDL 538

Query: 269 YLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGL-THR 303
             + G +  A+ + +EMPV+ + V W S++A    HR
Sbjct: 539 LGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHR 575


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/507 (36%), Positives = 295/507 (58%), Gaps = 6/507 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L++ M   G+  +  +L  V  AC + +    G QVH  ++K+    +V V N ++
Sbjct: 336 EAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAIL 395

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY  C  +   + +F        QRD VSW  +I A  + +   + I    +M ++ + 
Sbjct: 396 DLYGKCKALVEAYLVFQ----EMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGME 451

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD      VL AC+ L  L  G+ +H     +   L  D F+ + ++DMY KCG I  A+
Sbjct: 452 PDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGL--DAFVSSTVVDMYCKCGAITEAQ 509

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           K+ D +  + +VSWNS+I+G +   Q +EA   F  M  +G+KPD FT   VL++CAN+ 
Sbjct: 510 KLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLA 569

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            +ELGK +H  + K  +  D +I + LVDMYAKCG +  +  +F   +  D  S+ AMI 
Sbjct: 570 TIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMIC 629

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G A+HG+  +AL++F  M +  + P+  TFV VL ACSH GL+++GC++F  M+  Y L 
Sbjct: 630 GYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLV 689

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           PQ EH+ CMVD+ GR+   +EAL+ I+SMP+  DA VW  LL  CKI   VE+AE    N
Sbjct: 690 PQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETAASN 749

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           ++R +P+    YIL++N+Y+   +W +  + R+ M++ +++K PGCS +EV  E + F  
Sbjct: 750 VLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIEVQSEMHGFLV 809

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           GDK HP++ E+Y++L+ ++ + K  GY
Sbjct: 810 GDKVHPRSKEVYEMLNSLIGEMKLSGY 836



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 193/420 (45%), Gaps = 43/420 (10%)

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
           T++  Y L A     +L  GQ  HA  + +  +   +V N L+++YA CG     H +F 
Sbjct: 19  TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFD 78

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF------------------------- 211
              H    RD VSW T++ AYV     T+   S F                         
Sbjct: 79  TMPH----RDTVSWNTMLTAYVHAG-DTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFR 133

Query: 212 -------DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
                  +M +  +  D   L ++L +C  L DL+LG++IH         L  DV   +A
Sbjct: 134 NSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKT--GLETDVRAGSA 191

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L+DMY KC ++  A + F  M  +N VSW + IAG     Q+   +++F +MQ LGL   
Sbjct: 192 LVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVS 251

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
                    SCA +  L   + +H +  KN  ++D  +G A+VD+YAK G +  A   F 
Sbjct: 252 QPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFI 311

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            +   +V +  AM+VGL   G   +A+ +F  M++ G+  D ++  GV SAC+      +
Sbjct: 312 GLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQ 371

Query: 445 GCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           G + H L +   +++     +   ++DL+G+   + EA  + + M    D+  W A++ A
Sbjct: 372 GLQVHCLAVKSGFDVDVCVRN--AILDLYGKCKALVEAYLVFQEMEQ-RDSVSWNAIIAA 428



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 133/518 (25%), Positives = 232/518 (44%), Gaps = 47/518 (9%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           ++ +P V  +N +I           ++ L  EM  +G+  +  TL  +LK+C     L +
Sbjct: 110 TMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLAL 169

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G Q+HA ++KT L ++V   + L+ +Y  C  +    + FH       +R+ VSW   I 
Sbjct: 170 GVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFH----GMGERNSVSWGAAIA 225

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
             V+ +  T  +  F  M +  L            +C+ +  LS   ++H +   N F  
Sbjct: 226 GCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVF-- 283

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
           S D  +  A++D+Y K GN+  AR+ F  +P  NV + N+M+ GL   G   EA+ +F+ 
Sbjct: 284 SSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQF 343

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M   G+  D  +L  V ++CA +     G  VH    K+  + D  + NA++D+Y KC  
Sbjct: 344 MTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKA 403

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           + +A+ VF+ M+ RD  S+ A+I  L  +      +   +EM + G+EPD+ T+  VL A
Sbjct: 404 LVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKA 463

Query: 436 CSHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL---------- 484
           C+    +E G   H   +     L         +VD++ + G I EA  L          
Sbjct: 464 CAGLQSLEYGLVVHGKAIKSGLGLDAFVS--STVVDMYCKCGAITEAQKLHDRIGGQELV 521

Query: 485 ------------------------IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
                                   +  M + PD F +  +L  C   A +EL + +   +
Sbjct: 522 SWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQI 581

Query: 521 VRFEPEGDGAYILMT--NIYSSKNRWKEALKLRKKMKE 556
           ++ E  GD  YI  T  ++Y+      ++L + +K ++
Sbjct: 582 IKQEMLGD-EYISSTLVDMYAKCGNMPDSLLMFEKARK 618


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/646 (32%), Positives = 346/646 (53%), Gaps = 76/646 (11%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQ---TQILYDKIISLSRGNEIENL-----SLQNPQVY 84
           + +SV Q  Q HA +  +G   H+     +L      LS    +  +      L +P  +
Sbjct: 8   TPRSVRQASQLHAILTTSGRIAHRPSAEHLLNSLTNCLSAPRHLRYVLSLFDRLPHPTTF 67

Query: 85  LYNFIIQ-CL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           L++  ++ CL ++A     + + R M   G+  + +T  +V + C       + + +HA 
Sbjct: 68  LHDTALRACLQASAGADHPVLILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGLCRMLHAA 127

Query: 143 SMKTALLSNV-YVFNTLMRLYAVCGLIKAVHKLFH------------------------- 176
            ++T L S    V N L+ +YA  GL     + F                          
Sbjct: 128 CLRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDE 187

Query: 177 ----FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
                 Q P+  R++VSWT+LI  Y +   P +A+  F  M    + PD + ++  LSAC
Sbjct: 188 ARRLLVQAPE--RNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSAC 245

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA-------------- 278
           SKL +L  G  +H  +      ++  + +   LIDMY KCG+I  A              
Sbjct: 246 SKLKNLEFGRLLHLLVGKKRIQMTDKLVV--TLIDMYAKCGDIAQAQAVFDAVGRGQKPE 303

Query: 279 ------------------RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
                             R +FD+M  ++V+++NSMI G  H G+ ++AL +F +++  G
Sbjct: 304 PWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHG 363

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           ++ D+FT+V +L +CA++G L  G+ +H  +++  +  D ++  ALVDMY KCGR+D+A 
Sbjct: 364 MRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEAT 423

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  M  RDV++++AMI GLA +G    AL+ F +M + G +P  VT++ VL+ACSH+ 
Sbjct: 424 AVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSS 483

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           L+ EG +HF +M  ++ L PQ EHYGCM+DL  R+GL+ EA+ L+++MP+ P+A +W ++
Sbjct: 484 LLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASI 543

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           L AC++H  ++LA    E+L++  PE D  Y+ + NIY    +W EA ++R  M+E+ VK
Sbjct: 544 LSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGVK 603

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           KT G S + V G+ ++F   D+SHP TLEI  +++EI  + K+ GY
Sbjct: 604 KTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIARRLKSAGY 649


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/513 (38%), Positives = 297/513 (57%), Gaps = 8/513 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N +  +A+  +R M  +G+  N YT P +L AC    +   G+QVH + +K+   SNVYV
Sbjct: 243 NGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYV 302

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +YA CG +K    +    +      D+VSW +L+  +V+     EA+  F +M 
Sbjct: 303 QSALVDMYAKCGDLKNAKNMLETME----DDDVVSWNSLMVGFVRHGLEEEALRLFKNMH 358

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
             N++ D      VL+ C  +G ++    +H  I    F       + NAL+DMY K G+
Sbjct: 359 GRNMKIDDYTFPSVLNCCV-VGSINPK-SVHGLIIKTGFENYK--LVSNALVDMYAKTGD 414

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A  VF++M  K+V+SW S++ G       +E+L IF  M+  G+ PD F +  +L++
Sbjct: 415 MDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSA 474

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA +  LE GK VH    K+ +     + N+LV MYAKCG +D A  +F SM+ +DV ++
Sbjct: 475 CAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITW 534

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           TA+IVG A +GK   +L  +  M   G  PD +TF+G+L ACSHAGLV+EG K+F  M++
Sbjct: 535 TAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNK 594

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
           VY ++P  EHY CM+DLFGR+G + EA  L+  M + PDA VW +LL AC++H  +ELAE
Sbjct: 595 VYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAE 654

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
               NL   EP     Y++++N+YS+  +W +  K+RK MK + + K PGCS +E+    
Sbjct: 655 RAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRV 714

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             F   D+ HP+  EIY  +DEI+ + K  GY+
Sbjct: 715 NTFISDDRGHPREAEIYTKIDEIILRIKEAGYV 747



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 210/403 (52%), Gaps = 8/403 (1%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           +EA  L+R M ++G   + +TL  VL+ C     ++ G+ +H + +K     NV+V   L
Sbjct: 144 VEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGL 203

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +YA C  +      F F+     +++ V WT ++  Y +     +A+  F  M    +
Sbjct: 204 VDMYAKCKCVSEAE--FLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGV 261

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
             +      +L+ACS +     G ++H +I  + F    +V++ +AL+DMY KCG++ +A
Sbjct: 262 ECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGF--GSNVYVQSALVDMYAKCGDLKNA 319

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           + + + M   +VVSWNS++ G    G  +EAL +F+ M G  +K DD+T   VLN C  +
Sbjct: 320 KNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-V 378

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G +   K VH  + K        + NALVDMYAK G +D A+ VF  M  +DV S+T+++
Sbjct: 379 GSIN-PKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLV 437

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G A +    ++L IF +M   G+ PD+     +LSAC+   L+E G +  LD  +   L
Sbjct: 438 TGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS-GL 496

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           +     Y  +V ++ + G + +A  +  SM  V D   W A++
Sbjct: 497 RWSQSVYNSLVAMYAKCGCLDDADAIFVSMQ-VKDVITWTAII 538



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 178/394 (45%), Gaps = 45/394 (11%)

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           ++   A   ++Y  N L+   +  G +    KLF        Q+D  SW T+I +YV + 
Sbjct: 55  HTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFD----KMPQKDEYSWNTMISSYVNVG 110

Query: 202 YPTEAILSFFDMCQA---------------------------NLRPDG-----MILVIVL 229
              EA    FD C                             ++R +G       L  VL
Sbjct: 111 RLVEA-RELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVL 169

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD--EMPV 287
             CS LG +  G  IH ++  N F    +VF+   L+DMY KC  +  A  +F   E   
Sbjct: 170 RVCSSLGLIQTGEMIHGFVVKNGF--EGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDR 227

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           KN V W +M+ G    G   +A++ FR M   G++ + +T   +L +C+++     G+ V
Sbjct: 228 KNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQV 287

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H ++ K+   ++ ++ +ALVDMYAKCG +  A  +  +M+  DV S+ +++VG   HG  
Sbjct: 288 HGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLE 347

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            +AL +F  M    ++ D+ TF  VL+ C    +  +     +  +   N +  +     
Sbjct: 348 EEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSN---A 404

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           +VD++ + G +  A  + + M L  D   W +L+
Sbjct: 405 LVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLV 437



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 147/298 (49%), Gaps = 41/298 (13%)

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA--------- 309
           ++  N L++   K G +  ARK+FD+MP K+  SWN+MI+   + G+  EA         
Sbjct: 65  IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSC 124

Query: 310 ----------------------LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
                                  D+FR M+  G K   FTL  VL  C+++G ++ G+ +
Sbjct: 125 KSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMI 184

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHG 405
           H ++ KN    + F+   LVDMYAKC  + +A  +F+ ++   ++   +TAM+ G A +G
Sbjct: 185 HGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNG 244

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH--AGLVEEGCKHFLDMSRV-YNLQPQT 462
             +KA++ F  M   G+E ++ TF  +L+ACS   A    E    F+  S    N+  Q+
Sbjct: 245 DGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQS 304

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
                +VD++ + G ++ A +++++M    D   W +L+     H   E A  + +N+
Sbjct: 305 A----LVDMYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRHGLEEEALRLFKNM 357


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/576 (36%), Positives = 326/576 (56%), Gaps = 12/576 (2%)

Query: 37  VGQLKQFHAFIIKTGSPQHQTQIL---YDKIISLSRGNEIEN-LSLQNPQVYLYNFIIQC 92
           +G+L   HA I+      + +  L   Y K   L +   + N +S Q+  +  +N +I  
Sbjct: 125 LGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAA 184

Query: 93  LS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
            S +A   + I    +M   G+ PN+ TL  +L    Q+ +L  G+ +HAY ++     N
Sbjct: 185 FSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDN 244

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
           V +   L+ +YA C L+    K+F+       +++ V W+ +I  YV  D  ++A+  + 
Sbjct: 245 VVLQTALLDMYAKCHLLFYARKIFNTVN----KKNDVCWSAMIGGYVLHDSISDALALYD 300

Query: 212 DM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
           DM C   L P    L  +L AC++L DL  G K+H ++  +  +L  D  + N+LI MY 
Sbjct: 301 DMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDL--DTTVGNSLISMYA 358

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG + +A    DEM  K+ VS++++I+G    G  ++AL IFR+MQ  G+ P   T++ 
Sbjct: 359 KCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIA 418

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           +L +C+++  L+ G   H Y        D  I NA++DMY+KCG+I  +  +F  M+ RD
Sbjct: 419 LLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRD 478

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           + S+  MI+G  IHG   +AL +F E+  +G++PD+VT + VLSACSH+GLV EG   F 
Sbjct: 479 IISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFS 538

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            MS+ +N++P+  HY CMVDL  RAG + EA   I+ MP VP+  +WGALL AC+ H  +
Sbjct: 539 SMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNI 598

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           E+ E V + +    PEG G ++LM+NIYSS  RW +A  +R   +    KK+PGCS VE+
Sbjct: 599 EMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEI 658

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            G  + F  G +SHP++  I K L E++ Q K  GY
Sbjct: 659 SGVIHVFIGGHQSHPQSASINKKLQELLVQMKKLGY 694



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 143/434 (32%), Positives = 224/434 (51%), Gaps = 16/434 (3%)

Query: 81  PQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           P V L+N +I+  + + P + +I LY  ML  G+ P  +T P++LKAC   Q+L++G+ +
Sbjct: 70  PSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLI 129

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H ++    L  ++YV   L+ +YA CG +     LF+   H    RD+V+W  +I A+  
Sbjct: 130 HTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQ--DRDIVAWNAMIAAFSF 187

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
                + I S   M QA + P+   LV +L    +   L  G  IH Y   N F    +V
Sbjct: 188 HALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFF--FDNV 245

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            +  AL+DMY KC  +  ARK+F+ +  KN V W++MI G        +AL ++  M  +
Sbjct: 246 VLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCI 305

Query: 320 -GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            GL P   TL  +L +CA +  L+ GK +H ++ K+ ++ D  +GN+L+ MYAKCG +D 
Sbjct: 306 YGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDN 365

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A G    M  +D  SY+A+I G   +G A KAL IF +M   GI P   T + +L ACSH
Sbjct: 366 AVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSH 425

Query: 439 AGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI---REALDLIKSMPLVPDA 494
              ++ G C H   + R +     T     ++D++ + G I   RE  D +++     D 
Sbjct: 426 LAALQHGTCCHGYTVVRGFT--NDTSICNAIIDMYSKCGKITISREIFDRMQNR----DI 479

Query: 495 FVWGALLGACKIHA 508
             W  ++    IH 
Sbjct: 480 ISWNTMIIGYGIHG 493



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 132/252 (52%), Gaps = 10/252 (3%)

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I  AR VFD++P  +VV WN MI      G F++++ ++  M  LG+ P +FT   +L +
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--KCRDVY 392
           C+++  L+LG+ +HT+     ++ D ++  AL+ MYAKCG + QA  +F S+  + RD+ 
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIV 176

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLD 451
           ++ AMI   + H    + +   ++M Q G+ P+  T V +L     A  + +G   H   
Sbjct: 177 AWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYY 236

Query: 452 MSRVY--NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           +   +  N+  QT     ++D++ +  L+  A  +  ++    D   W A++G   +H  
Sbjct: 237 IRNFFFDNVVLQTA----LLDMYAKCHLLFYARKIFNTVNKKNDV-CWSAMIGGYVLHDS 291

Query: 510 VELAEIVMENLV 521
           +  A  + ++++
Sbjct: 292 ISDALALYDDML 303


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/512 (38%), Positives = 307/512 (59%), Gaps = 10/512 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI L+ +M + G +P+ +T   VL AC +   L +G+Q+H+  ++  L  +V V  +L+
Sbjct: 232 DAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLV 291

Query: 160 RLYAVC---GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM-DYPTEAILSFFDMCQ 215
            +YA C   G +    K+F   Q P+   +++SWT +I AYV+  +   EAI  F  M  
Sbjct: 292 DMYAKCAADGSVDDSRKVF--EQMPE--HNVMSWTAIITAYVQSGECDKEAIELFCKMIS 347

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
            ++RP+      VL AC  L D   G +++ Y       ++    + N+LI MY + G +
Sbjct: 348 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK--LGIASVNCVGNSLISMYARSGRM 405

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             ARK FD +  KN+VS+N+++ G     + +EA  +F  +   G+    FT   +L+  
Sbjct: 406 EDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGA 465

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A+IG +  G+ +H  L K    ++  I NAL+ MY++CG I+ AF VF  M+ R+V S+T
Sbjct: 466 ASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWT 525

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI G A HG A +AL++F +M + G +P+E+T+V VLSACSH G++ EG KHF  M + 
Sbjct: 526 SMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKE 585

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + + P+ EHY CMVDL GR+GL+ EA++ I SMPL+ DA VW  LLGAC++H   EL   
Sbjct: 586 HGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRH 645

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             E ++  EP+   AYIL++N+++S  +WK+ +K+RK MKER + K  GCS +EV    +
Sbjct: 646 AAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVH 705

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F  G+ SHP+  +IY+ LD++  + K  GYI
Sbjct: 706 RFHVGETSHPQAWQIYQELDQLASKIKEMGYI 737



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 196/370 (52%), Gaps = 10/370 (2%)

Query: 75  NLSLQNPQVY-LYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133
           +LSL+NP    L N +I+ L       A +    M  +   P+  T   +LK+C + ++ 
Sbjct: 1   SLSLKNPNFEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNF 60

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
           ++G+ VH   M++ L  +  V NTL+ LY+ CG  +    +F   +    +RDLVSW+ +
Sbjct: 61  QLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIF---EGMGNKRDLVSWSAM 117

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           +  +       +AI +F DM +    P+      V+ ACS      +G  I+ ++    +
Sbjct: 118 VSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGY 177

Query: 254 NLSPDVFIHNALIDMYLK-CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
            L  DV +   LIDM++K  G++ SA KVFD+MP +N+V+W  MI      G  ++A+D+
Sbjct: 178 -LEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDL 236

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F  M+  G  PD FT   VL++C  +G L LGK +H+ + +  +  D  +G +LVDMYAK
Sbjct: 237 FLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAK 296

Query: 373 C---GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK-ALDIFSEMSQVGIEPDEVT 428
           C   G +D +  VF  M   +V S+TA+I      G+  K A+++F +M    I P+  +
Sbjct: 297 CAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFS 356

Query: 429 FVGVLSACSH 438
           F  VL AC +
Sbjct: 357 FSSVLKACGN 366



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 155/299 (51%), Gaps = 14/299 (4%)

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M Q N  PD     I+L +C +  +  LG  +HR +  +   L  D  + N LI +Y KC
Sbjct: 35  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLEL--DSVVLNTLISLYSKC 92

Query: 273 GNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           G+  +AR +F+ M  K ++VSW++M++   +     +A+  F  M  LG  P+++    V
Sbjct: 93  GDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAV 152

Query: 332 LNSCANIGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAK-CGRIDQAFGVFRSMKCR 389
           + +C+N  +  +G+ ++ ++ K  ++  D  +G  L+DM+ K  G +  A+ VF  M  R
Sbjct: 153 IRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPER 212

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           ++ ++T MI   A  G A  A+D+F +M   G  PD  T+  VLSAC+  GL+  G +  
Sbjct: 213 NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLH 272

Query: 450 LDMSRVYNLQPQTE-HYGC-MVDLFGRA---GLIREALDLIKSMPLVPDAFVWGALLGA 503
              SRV  L    +   GC +VD++ +    G + ++  + + MP   +   W A++ A
Sbjct: 273 ---SRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITA 327



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 58/359 (16%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           YN I+   + N    EA  L+ E+   G+  + +T   +L       ++  G+Q+H   +
Sbjct: 423 YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 482

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K    SN  + N L+ +Y+ CG I+A  ++F    +    R+++SWT++I  + K  + T
Sbjct: 483 KGGYKSNQCICNALISMYSRCGNIEAAFQVF----NEMEDRNVISWTSMITGFAKHGFAT 538

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A+  F  M +   +P+ +  V VLSACS +G +S G K        HFN          
Sbjct: 539 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQK--------HFN---------- 580

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
              MY + G +P                +  M+  L   G   EA++    M    L  D
Sbjct: 581 --SMYKEHGIVPRMEH------------YACMVDLLGRSGLLVEAMEFINSMP---LMAD 623

Query: 325 DFTLVCVLNSCANIGWLELGK-WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
                 +L +C   G  ELG+      L++   +   +I   L +++A  G+      + 
Sbjct: 624 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYI--LLSNLHASAGQWKDVVKIR 681

Query: 384 RSMKCRDVYSYTAMI------------VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           +SMK R++                   VG   H +AW+   I+ E+ Q+  +  E+ ++
Sbjct: 682 KSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQ---IYQELDQLASKIKEMGYI 737


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/585 (33%), Positives = 332/585 (56%), Gaps = 16/585 (2%)

Query: 31  LESSKSVGQL---KQFHAFIIKTG-SPQHQTQ----ILYDKIISLSRGNEIENLSLQNPQ 82
           L +  SVG L   KQ H++++K G S  + T+     LY K   +   ++I NL      
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG-DRTN 310

Query: 83  VYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           V L+N ++      + L ++  ++ +M   G+ PN +T P +L+ C  +  + +G+Q+H+
Sbjct: 311 VVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHS 370

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
            S+K    S++YV   L+ +Y+    +    K+    +    +RD+VSWT++I  YV+ D
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLE----KRDVVSWTSMIAGYVQHD 426

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           +  EA+ +F +M    + PD + L    SAC+ +  +  G++IH  +  + +  + D+ I
Sbjct: 427 FCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY--AADISI 484

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            N L+++Y +CG    A  +F E+  K+ ++WN +I+G      +++AL +F +M   G 
Sbjct: 485 WNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGA 544

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           K + FT +  +++ AN+  ++ GK VH    K    ++  + NAL+ +Y KCG I+ A  
Sbjct: 545 KYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKM 604

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           +F  M  R+  S+  +I   + HG+  +ALD+F +M Q G++P++VTF+GVL+ACSH GL
Sbjct: 605 IFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGL 664

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           VEEG  +F  MS VY L P  +HY C+VD+ GRAG +  A   +  MP+  +A +W  LL
Sbjct: 665 VEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLL 724

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
            ACK+H  +E+ E+  ++L+  EP    +Y+L++N Y+   +W    ++RK MK+R ++K
Sbjct: 725 SACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRK 784

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            PG S +EV    + F  GD+ HP + +IYK L E+  +    GY
Sbjct: 785 EPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGY 829



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 201/404 (49%), Gaps = 12/404 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA  LY +M    ++P  Y L  VL AC + +    G+ +HA   K A  S  +V N L+
Sbjct: 127 EAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALI 186

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY   G  K   ++F          D V++ TLI  + +  +   A+  F +M  + LR
Sbjct: 187 ALYLGFGSFKLAERVF----CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + +  +L+AC+ +GDL  G ++H Y+      +S D     +L+D+Y+KCG+I +A 
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKA--GMSFDYITEGSLLDLYVKCGDIETAH 300

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +F+     NVV WN M+          ++ +IF +MQ  G+ P+ FT  C+L +C   G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTG 360

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            +ELG+ +H+   KN   +D ++   L+DMY+K   +D+A  +   ++ RDV S+T+MI 
Sbjct: 361 QIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIA 420

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY--N 457
           G   H    +AL  F EM   G+ PD +      SAC+    + +G +     +RVY   
Sbjct: 421 GYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIH---ARVYVSG 477

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
                  +  +V+L+ R G   EA  L + +    D   W  L+
Sbjct: 478 YAADISIWNTLVNLYARCGRSEEAFSLFREIDH-KDEITWNGLI 520



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 205/409 (50%), Gaps = 8/409 (1%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+ ++ EM + GL P+  T+  +L AC     L+ G+Q+H+Y +K  +  +     +L+ 
Sbjct: 229 ALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLD 288

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           LY  CG I+  H +F+       + ++V W  ++ AY ++    ++   F  M    + P
Sbjct: 289 LYVKCGDIETAHDIFNLGD----RTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHP 344

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           +      +L  C+  G + LG +IH     N F    D+++   LIDMY K   +  ARK
Sbjct: 345 NKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFE--SDMYVSGVLIDMYSKYRCLDKARK 402

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           + + +  ++VVSW SMIAG       +EAL  F+ MQ  G+ PD+  L    ++CA I  
Sbjct: 403 ILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKA 462

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           +  G  +H  +  +    D  I N LV++YA+CGR ++AF +FR +  +D  ++  +I G
Sbjct: 463 MRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISG 522

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
                   +AL +F +MSQ G + +  TF+  +SA ++   +++G K     +       
Sbjct: 523 FGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQG-KQVHGRAVKTGHTS 581

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           +TE    ++ L+G+ G I +A  +   M L  +   W  ++ +C  H +
Sbjct: 582 ETEVANALISLYGKCGSIEDAKMIFSEMSL-RNEVSWNTIITSCSQHGR 629



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 185/376 (49%), Gaps = 8/376 (2%)

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           ++HA S+   L ++  + N L+ LYA  GL+    ++F       + RD VSW  ++  Y
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFK----ELSSRDHVSWVAMLSGY 119

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            +     EA   +  M    + P   +L  VLSAC+K    + G  IH  +    F    
Sbjct: 120 AQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAF--CS 177

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           + F+ NALI +YL  G+   A +VF +M   + V++N++I+G    G  + AL IF  MQ
Sbjct: 178 ETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQ 237

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             GL+PD  T+  +L +CA++G L+ GK +H+YL K  ++ D     +L+D+Y KCG I+
Sbjct: 238 LSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIE 297

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A  +F      +V  +  M+V         K+ +IF +M   GI P++ T+  +L  C+
Sbjct: 298 TAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCT 357

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
             G +E G +    +S     +      G ++D++ +   + +A  +++ M    D   W
Sbjct: 358 CTGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILE-MLEKRDVVSW 415

Query: 498 GALLGACKIHAKVELA 513
            +++     H   E A
Sbjct: 416 TSMIAGYVQHDFCEEA 431


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/512 (38%), Positives = 307/512 (59%), Gaps = 10/512 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI L+ +M + G +P+ +T   VL AC +   L +G+Q+H+  ++  L  +V V  +L+
Sbjct: 214 DAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLV 273

Query: 160 RLYAVC---GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM-DYPTEAILSFFDMCQ 215
            +YA C   G +    K+F   Q P+   +++SWT +I AYV+  +   EAI  F  M  
Sbjct: 274 DMYAKCAADGSVDDSRKVF--EQMPE--HNVMSWTAIITAYVQSGECDKEAIELFCKMIS 329

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
            ++RP+      VL AC  L D   G +++ Y       ++    + N+LI MY + G +
Sbjct: 330 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK--LGIASVNCVGNSLISMYARSGRM 387

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             ARK FD +  KN+VS+N+++ G     + +EA  +F  +   G+    FT   +L+  
Sbjct: 388 EDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGA 447

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A+IG +  G+ +H  L K    ++  I NAL+ MY++CG I+ AF VF  M+ R+V S+T
Sbjct: 448 ASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWT 507

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI G A HG A +AL++F +M + G +P+E+T+V VLSACSH G++ EG KHF  M + 
Sbjct: 508 SMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKE 567

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + + P+ EHY CMVDL GR+GL+ EA++ I SMPL+ DA VW  LLGAC++H   EL   
Sbjct: 568 HGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRH 627

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             E ++  EP+   AYIL++N+++S  +WK+ +K+RK MKER + K  GCS +EV    +
Sbjct: 628 AAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVH 687

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F  G+ SHP+  +IY+ LD++  + K  GYI
Sbjct: 688 RFHVGETSHPQAWQIYQELDQLASKIKEMGYI 719



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 233/460 (50%), Gaps = 48/460 (10%)

Query: 86  YNFIIQCLSNANPLE--AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           ++ ++ C +N N +E  AI  + +ML  G  PN Y    V++AC  +    VG+ ++ + 
Sbjct: 96  WSAMVSCFAN-NSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFV 154

Query: 144 MKTALL-SNVYVFNTLMRLYAV-CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           +KT  L ++V V   L+ ++    G + + +K+F        +R+LV+WT +I  + ++ 
Sbjct: 155 VKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVF----DKMPERNLVTWTLMITRFAQLG 210

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
              +AI  F DM  +   PD      VLSAC++LG L+LG ++H  +      L+ DV +
Sbjct: 211 CARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVI--RLGLALDVCV 268

Query: 262 HNALIDMYLKC---GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF-KEALDIFRRMQ 317
             +L+DMY KC   G++  +RKVF++MP  NV+SW ++I      G+  KEA+++F +M 
Sbjct: 269 GCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI 328

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              ++P+ F+   VL +C N+     G+ V++Y  K  I +   +GN+L+ MYA+ GR++
Sbjct: 329 SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRME 388

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F  +  +++ SY A++ G A + K+ +A  +F+E++  GI     TF  +LS  +
Sbjct: 389 DARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAA 448

Query: 438 HAGLVEEG------------------CKHFLDM-SRVYNLQPQTEHYGCMVDL------- 471
             G + +G                  C   + M SR  N++   + +  M D        
Sbjct: 449 SIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTS 508

Query: 472 ----FGRAGLIREALDLIKSM---PLVPDAFVWGALLGAC 504
               F + G    AL++   M      P+   + A+L AC
Sbjct: 509 MITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 548



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 179/329 (54%), Gaps = 9/329 (2%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P+  T   +LK+C + ++ ++G+ VH   M++ L  +  V NTL+ LY+ CG  +    +
Sbjct: 24  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F   +    +RDLVSW+ ++  +       +AI +F DM +    P+      V+ ACS 
Sbjct: 84  F---EGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSN 140

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK-CGNIPSARKVFDEMPVKNVVSW 293
                +G  I+ ++    + L  DV +   LIDM++K  G++ SA KVFD+MP +N+V+W
Sbjct: 141 ANYAWVGEIIYGFVVKTGY-LEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTW 199

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
             MI      G  ++A+D+F  M+  G  PD FT   VL++C  +G L LGK +H+ + +
Sbjct: 200 TLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIR 259

Query: 354 NHINTDGFIGNALVDMYAKC---GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK- 409
             +  D  +G +LVDMYAKC   G +D +  VF  M   +V S+TA+I      G+  K 
Sbjct: 260 LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKE 319

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A+++F +M    I P+  +F  VL AC +
Sbjct: 320 AIELFCKMISGHIRPNHFSFSSVLKACGN 348



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 155/299 (51%), Gaps = 14/299 (4%)

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M Q N  PD     I+L +C +  +  LG  +HR +  +   L  D  + N LI +Y KC
Sbjct: 17  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLEL--DSVVLNTLISLYSKC 74

Query: 273 GNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           G+  +AR +F+ M  K ++VSW++M++   +     +A+  F  M  LG  P+++    V
Sbjct: 75  GDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAV 134

Query: 332 LNSCANIGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAK-CGRIDQAFGVFRSMKCR 389
           + +C+N  +  +G+ ++ ++ K  ++  D  +G  L+DM+ K  G +  A+ VF  M  R
Sbjct: 135 IRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPER 194

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           ++ ++T MI   A  G A  A+D+F +M   G  PD  T+  VLSAC+  GL+  G +  
Sbjct: 195 NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLH 254

Query: 450 LDMSRVYNLQPQTE-HYGC-MVDLFGRA---GLIREALDLIKSMPLVPDAFVWGALLGA 503
              SRV  L    +   GC +VD++ +    G + ++  + + MP   +   W A++ A
Sbjct: 255 ---SRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITA 309



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 38/257 (14%)

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
           G+   A      M      PD  T   +L SC      +LGK VH  L ++ +  D  + 
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 364 NALVDMYAKCGRIDQAFGVFRSM-KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           N L+ +Y+KCG  + A  +F  M   RD+ S++AM+   A +   W+A+  F +M ++G 
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 423 EPDEVTFVGVLSACSHA----------------GLVEE----GCKHFLDM---------- 452
            P+E  F  V+ ACS+A                G +E     GC+  +DM          
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCE-LIDMFVKGSGDLGS 183

Query: 453 -SRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMPL---VPDAFVWGALLGACKI 506
             +V++  P+     +  M+  F + G  R+A+DL   M L   VPD F + ++L AC  
Sbjct: 184 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 243

Query: 507 HAKVELAEIVMENLVRF 523
              + L + +   ++R 
Sbjct: 244 LGLLALGKQLHSRVIRL 260



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 58/359 (16%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           YN I+   + N    EA  L+ E+   G+  + +T   +L       ++  G+Q+H   +
Sbjct: 405 YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 464

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K    SN  + N L+ +Y+ CG I+A  ++F    +    R+++SWT++I  + K  + T
Sbjct: 465 KGGYKSNQCICNALISMYSRCGNIEAAFQVF----NEMEDRNVISWTSMITGFAKHGFAT 520

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A+  F  M +   +P+ +  V VLSACS +G +S G K        HFN          
Sbjct: 521 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQK--------HFN---------- 562

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
              MY + G +P                +  M+  L   G   EA++    M    L  D
Sbjct: 563 --SMYKEHGIVPRMEH------------YACMVDLLGRSGLLVEAMEFINSMP---LMAD 605

Query: 325 DFTLVCVLNSCANIGWLELGK-WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
                 +L +C   G  ELG+      L++   +   +I   L +++A  G+      + 
Sbjct: 606 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYI--LLSNLHASAGQWKDVVKIR 663

Query: 384 RSMKCRDVYSYTAMI------------VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           +SMK R++                   VG   H +AW+   I+ E+ Q+  +  E+ ++
Sbjct: 664 KSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQ---IYQELDQLASKIKEMGYI 719


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/602 (35%), Positives = 337/602 (55%), Gaps = 15/602 (2%)

Query: 14  NDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI------LYDKIISL 67
           +  +TF  L        L +SKS+ Q  Q HA +   G+ +  T +       Y     +
Sbjct: 15  SSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHM 74

Query: 68  SRGNEI-ENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLK 125
                I + + L+N   +L+N +I+  + N +P  A+ LY +ML  G  P+ +T P+VLK
Sbjct: 75  PYAQHIFDQIVLKNS--FLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLK 132

Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
           AC       +G++VHA  +   L  +VYV N+++ +Y   G ++A   +F         R
Sbjct: 133 ACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFD----RMLVR 188

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           DL SW T++  +VK      A   F DM +     D   L+ +LSAC  + DL +G +IH
Sbjct: 189 DLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIH 248

Query: 246 RYITDN-HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
            Y+  N       + F+ N++IDMY  C ++  ARK+F+ + VK+VVSWNS+I+G    G
Sbjct: 249 GYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCG 308

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
              +AL++F RM  +G  PD+ T++ VL +C  I  L LG  V +Y+ K     +  +G 
Sbjct: 309 DAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGT 368

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
           AL+ MYA CG +  A  VF  M  +++ + T M+ G  IHG+  +A+ IF EM   G+ P
Sbjct: 369 ALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTP 428

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           DE  F  VLSACSH+GLV+EG + F  M+R Y+++P+  HY C+VDL GRAG + EA  +
Sbjct: 429 DEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAV 488

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
           I++M L P+  VW ALL AC++H  V+LA I  + L    P+G   Y+ ++NIY+++ RW
Sbjct: 489 IENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRW 548

Query: 545 KEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
           ++   +R  + +R+++K P  S VE+    ++F  GD SH ++ +IY  L ++  Q K  
Sbjct: 549 EDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKA 608

Query: 605 GY 606
           GY
Sbjct: 609 GY 610


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/580 (35%), Positives = 339/580 (58%), Gaps = 30/580 (5%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQVYLYNFII 90
           +++Q HAF +KT    H    +  ++++L    +I +L         +Q   +  +N II
Sbjct: 28  EVEQLHAFSLKTAIFNHP--FVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTII 85

Query: 91  QC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           +C + N    + I L+ E L+   LP+ +TLP V+K C +   ++ G+Q+H  ++K    
Sbjct: 86  KCYVENQFSHDGIVLFHE-LVHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 144

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
           S+V+V  +L+ +Y+ CG I    K+F         +D+V W +LI  Y +      A+  
Sbjct: 145 SDVFVQGSLVNMYSKCGEIDCARKVFD----GMIDKDVVLWNSLIDGYARCGEIDIALQL 200

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP--DVFIHNALID 267
           F +M +     D     +++   SK G +    K+        F+  P  ++   NA+I+
Sbjct: 201 FEEMPER----DAFSWTVLVDGLSKCGKVESARKL--------FDQMPCRNLVSWNAMIN 248

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
            Y+K G+  SA ++F +MP+ ++V+WN MIAG    GQF +A+ +F  M  LG +P   T
Sbjct: 249 GYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHAT 308

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           LV VL++ + +  L  G+W+H+Y++KN    DG +G +L++MYAKCG I+ A  VFR+++
Sbjct: 309 LVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQ 368

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            + V  +TA+IVGL IHG A  AL +F EM + G++P+ + F+GVL+AC+HAGLV++G +
Sbjct: 369 KKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQ 428

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           +F  M   Y ++P  EHYGC+VD+  RAG + EA + I++MP+ P+  +W +LLG  + H
Sbjct: 429 YFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNH 488

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
            K+++ E   + ++   PE  G YIL++N+Y++   W++   +R+ M +R  +K PGCS 
Sbjct: 489 GKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSS 548

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           VE  G  +EF  GD SHP+T EIY  + E+  + K  G++
Sbjct: 549 VEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHV 588


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/566 (37%), Positives = 326/566 (57%), Gaps = 19/566 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRG---NEIENLSLQNPQVYL 85
           L+ SK+  Q+ Q HA +I T   S       L D ++S +      E+    +  P  ++
Sbjct: 18  LQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFI 77

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
            N +++C + ++ P  A+  Y EM  KGLL + YT P+VLKAC     L  G  V   ++
Sbjct: 78  CNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAV 137

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K     +V+V N L+ +Y  CG       +F       +++DLVSW +++  YV      
Sbjct: 138 KRGFGGDVFVVNGLISMYCRCGETGWARAVFD----GFSEKDLVSWNSMLGGYVWCGEME 193

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A   F +M + ++       +++     K+G+++      R   D+    + D+   N+
Sbjct: 194 NAQNMFDEMPERDVVSWS---IMIDGYGKKMGEVNRA----RVFFDSM--PTRDLVSWNS 244

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           +ID Y K G +  AR++FD+M  KNV+SW+ MI G       KEAL++FR+M   G+KPD
Sbjct: 245 MIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPD 304

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             ++V  +++C+ +G L+ G+W+H Y+ +N +  D  +  ALVDMY KCG  D+A  +F 
Sbjct: 305 RVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFN 364

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
           SM  R+V S+  MIVGL ++G   +AL+ F++M    I  D++ F+GVL ACSHA LV E
Sbjct: 365 SMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTE 424

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G   F  M  VY L+P+ EHYGC+VDL GRAG + +  ++I+SMP+ P+A +WG+LL AC
Sbjct: 425 GLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLAC 484

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           +IH  V LAEIV+E L   + +  G Y+LM+NIY+    W+  L++RK MKERK+KK  G
Sbjct: 485 RIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIG 544

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEI 590
            S++EV G   EF  G+KSH    EI
Sbjct: 545 RSVIEVDGNVEEFVSGEKSHILREEI 570


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/516 (37%), Positives = 299/516 (57%), Gaps = 38/516 (7%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV--CGLIKAVHKLFHFRQ 179
           ++L+ C   + LR   Q+H   +KT L+ +    + L+   A    G +     +F    
Sbjct: 23  HLLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIF 79

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
            P    +   W T+I+ Y     P EA+L +  M   ++  +      +L ACS +  L 
Sbjct: 80  RP----NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALE 135

Query: 240 LGIKIHR-----------YITDNHFNL------------------SPDVFIHNALIDMYL 270
              +IH            Y T++  N+                    D    N++ID Y 
Sbjct: 136 ETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYT 195

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG I  A ++F+ MP +N++SW SMI+G    G+ KEAL++F RMQ  G+K D+  LV 
Sbjct: 196 KCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVS 255

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
            L +CA++G L+ GKW+H Y+ K+ I  D  +G  L+DMYAKCG +++A  VFR M+ + 
Sbjct: 256 TLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKG 315

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           V  +TAMI G AIHG+  +AL+ F +M   G+EP+++TF G+L+ACSHAGLV E    F 
Sbjct: 316 VSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFE 375

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M R++  +P  EHYGCMVDL GRAGL++EA +LI++MP+ P+A +WGALL AC IH  +
Sbjct: 376 SMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNL 435

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           EL + + + L++ +P   G YI + +I+++   W +A ++R++MKE+ V K PGCS++ V
Sbjct: 436 ELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISV 495

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            G  +EF  GD+SHP+  EI  +L++I+ + +  GY
Sbjct: 496 NGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGY 531



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 222/469 (47%), Gaps = 64/469 (13%)

Query: 1   MASPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL 60
           MA  L   +    ++ N  Q L LL +   +E      +L+Q H  ++KTG      +I 
Sbjct: 1   MAPILCTPTSQLSSESNAAQTLHLLQRCSNME------ELRQIHGQMLKTGLIL--DEIP 52

Query: 61  YDKIISLSRGNEIENLS--------LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIK 111
             K+++        +L+        +  P  +++N +I+  SN+  P EA+ LY  ML  
Sbjct: 53  ASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYH 112

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
            +  N YT P++LKAC    +L   QQ+HA+ +K    S +Y  N+L+ +Y+  G IK+ 
Sbjct: 113 SVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSA 172

Query: 172 HKLFH-----------------------------FRQHPQAQRDLVSWTTLIQAYVKMDY 202
             LF                              F   P  +R+++SWT++I   V    
Sbjct: 173 RLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMP--ERNIISWTSMISGCVGAGK 230

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
           P EA+  F  M  A ++ D + LV  L AC+ LG L  G  IH YI  +   + P   + 
Sbjct: 231 PKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDP--ILG 288

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
             LIDMY KCG++  A +VF +M  K V  W +MI+G    G+ +EAL+ F +MQ  G++
Sbjct: 289 CVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVE 348

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN-----ALVDMYAKCGRID 377
           P+  T   +L +C++ G +   K +   +++ H    GF  +      +VD+  + G + 
Sbjct: 349 PNQMTFTGILTACSHAGLVHEAKLLFESMERIH----GFKPSIEHYGCMVDLLGRAGLLK 404

Query: 378 QAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           +A  +  +M  + +   + A++    IHG     L++  ++ ++ I+ D
Sbjct: 405 EAEELIENMPVKPNAAIWGALLNACHIHGN----LELGKQIGKILIQVD 449


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/588 (34%), Positives = 327/588 (55%), Gaps = 20/588 (3%)

Query: 31  LESSKSVG---QLKQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQ 82
           L +  SVG   + KQ H+++IK G       +     LY K   +   +E   L+ +   
Sbjct: 321 LSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEY-FLTTETEN 379

Query: 83  VYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           V L+N ++       N  E+  ++ +M I+GL+PN YT P +L+ C    +L +G+Q+H 
Sbjct: 380 VVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHT 439

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             +K+    NVYV + L+ +YA  G +     +    +    + D+VSWT +I  Y + D
Sbjct: 440 QVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR----EEDVVSWTAMIAGYTQHD 495

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH--RYITDNHFNLSPDV 259
              EA+  F +M    +R D +     +SAC+ +  L+ G +IH   YI+      S D+
Sbjct: 496 LFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYIS----GYSEDL 551

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            I NAL+ +Y +CG    A   F+++  K+ +SWN++I+G    G  +EAL +F +M   
Sbjct: 552 SIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQA 611

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G++ + FT    +++ AN   ++ GK +H  + K   +++    N L+ +Y+KCG I+ A
Sbjct: 612 GVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDA 671

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
              F  M  ++V S+ AMI G + HG   +A+ +F EM Q+G+ P+ VTFVGVLSACSH 
Sbjct: 672 KREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHV 731

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLV EG  +F  MS+ + L P+ EHY C+VDL GRA L+  A + I+ MP+ PDA +W  
Sbjct: 732 GLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRT 791

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           LL AC +H  +E+ E    +L+  EPE    Y+L++N+Y+   +W    + R+ MK+R V
Sbjct: 792 LLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGV 851

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           KK PG S +EV    + F  GD+ HP   +IY+ +D++  ++   GY+
Sbjct: 852 KKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYV 899



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 246/486 (50%), Gaps = 24/486 (4%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS--LSRGNEIENL-----SLQNPQVYL 85
           +S S+   K+ HA I K+G       +L  ++I   L+ G E++N       + +  V  
Sbjct: 22  NSGSLLDAKKLHARIFKSGFDGED--VLGSRLIDIYLAHG-EVDNAIKLFDDIPSSNVSF 78

Query: 86  YNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQS-LRVGQQVHAYS 143
           +N +I   L+     + + L+  M+ + + P+  T   VL+AC   ++  +V +Q+HA  
Sbjct: 79  WNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKI 138

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +     S+  V N L+ LY+  G +     +F         +D VSW  +I    +    
Sbjct: 139 IHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFE----RLFLKDSVSWVAMISGLSQNGRE 194

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EAIL F  M ++ + P   +   VLSAC+K+    LG ++H +I    + LS + F+ N
Sbjct: 195 DEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVK--WGLSSETFVCN 252

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL+ +Y + GN+ +A ++F +M  ++ +S+NS+I+GL  RG    AL +F +MQ   +KP
Sbjct: 253 ALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKP 312

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  T+  +L++CA++G    GK +H+Y+ K  +++D  I  +L+D+Y KC  I+ A   F
Sbjct: 313 DCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYF 372

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
            + +  +V  +  M+V     G   ++  IF +M   G+ P++ T+  +L  C+  G ++
Sbjct: 373 LTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALD 432

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGC--MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
            G +     ++V     Q   Y C  ++D++ + G +  A  +++ +    D   W A++
Sbjct: 433 LGEQIH---TQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMI 488

Query: 502 GACKIH 507
                H
Sbjct: 489 AGYTQH 494



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 234/485 (48%), Gaps = 43/485 (8%)

Query: 111 KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170
           +G+  N  T  ++ + C+ S SL   +++HA   K+       + + L+ +Y   G +  
Sbjct: 4   RGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDN 63

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
             KLF     P +  ++  W  +I   +     ++ +  F  M   N+ PD      VL 
Sbjct: 64  AIKLFD--DIPSS--NVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLR 119

Query: 231 ACSK-LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           ACS       +  +IH  I  + F  SP   + N LID+Y K G++  A+ VF+ + +K+
Sbjct: 120 ACSGGKAPFQVTEQIHAKIIHHGFGSSP--LVCNPLIDLYSKNGHVDLAKLVFERLFLKD 177

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
            VSW +MI+GL+  G+  EA+ +F +M    + P  +    VL++C  I   +LG+ +H 
Sbjct: 178 SVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHG 237

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           ++ K  ++++ F+ NALV +Y++ G +  A  +F  M  RD  SY ++I GLA  G + +
Sbjct: 238 FIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDR 297

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAG--------------------LVEEG---- 445
           AL +F +M    ++PD VT   +LSAC+  G                    L+ EG    
Sbjct: 298 ALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLD 357

Query: 446 --CKHF-LDMSRVYNLQPQTEH---YGCMVDLFGRAGLIREALDLIKSMP---LVPDAFV 496
              K F ++ +  Y L  +TE+   +  M+  +G+ G + E+  +   M    L+P+ + 
Sbjct: 358 LYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYT 417

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI--LMTNIYSSKNRWKEALKLRKKM 554
           + ++L  C     ++L E +   +++   + +  Y+  ++ ++Y+       A  + +++
Sbjct: 418 YPSILRTCTSLGALDLGEQIHTQVIKSGFQFN-VYVCSVLIDMYAKHGELDTARGILQRL 476

Query: 555 KERKV 559
           +E  V
Sbjct: 477 REEDV 481



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 118/277 (42%), Gaps = 49/277 (17%)

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+  G++ +  T + +   C N G L   K +H  + K+  + +  +G+ L+D+Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +D A  +F  +   +V  +  +I GL     A + L +FS M    + PDE TF  VL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           CS       G K    ++    +  +  H+G     FG             S PLV +  
Sbjct: 121 CS-------GGKAPFQVTE--QIHAKIIHHG-----FG-------------SSPLVCN-- 151

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
               L+     +  V+LA++V E L     +   +++ M +  S   R  EA+ L  +M 
Sbjct: 152 ---PLIDLYSKNGHVDLAKLVFERLFL---KDSVSWVAMISGLSQNGREDEAILLFCQMH 205

Query: 556 ERKVKKTP--------GCSLVEVYGEFYEFRKGDKSH 584
           +  V  TP         C+ +E+      F+ G++ H
Sbjct: 206 KSAVIPTPYVFSSVLSACTKIEL------FKLGEQLH 236


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/526 (37%), Positives = 309/526 (58%), Gaps = 51/526 (9%)

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT-ALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L + +T P+ LK            Q+HA+ +KT + LS++     L R+ +VC    +  
Sbjct: 21  LLHNFTSPFELK------------QLHAHLLKTNSPLSSL----PLSRVASVCAFNSSFS 64

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
                 Q   A  ++  W T ++++ + D P +AI  F+ + + ++ PD      VL AC
Sbjct: 65  YAKLIFQLLDAS-EVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKAC 123

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD--------- 283
           S+L D+  G  +H Y+      L  ++F+ N ++ +Y  CG I  ARKVFD         
Sbjct: 124 SRLLDVRNGKIVHGYV--EKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVIT 181

Query: 284 ----------------------EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
                                 EMP +NV SW SMI G    G+ KEA+D+F  M+  GL
Sbjct: 182 WNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGL 241

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
            P++ T+V VL +CA++G L LG+ +H + +++    +  + N L+DMY KCG ++ A  
Sbjct: 242 LPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACR 301

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           +F +M+ R V S++AMI GLA HG+A  AL +F++M   G++P+ VTF+G+L ACSH G+
Sbjct: 302 IFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGM 361

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           VE+G K+F  M+R Y + P+ EHYGCMVDLF RAGL++EA + I +MP+ P+  VWGALL
Sbjct: 362 VEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALL 421

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
           G CK+H  ++LAE    +L + +P  DG Y++++NIY+   RW++  ++RK M++R VKK
Sbjct: 422 GGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKK 481

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           TPG S + V G  Y F  GD +HP+T EI++  ++++ + K  GY+
Sbjct: 482 TPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYV 527



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 128/440 (29%), Positives = 219/440 (49%), Gaps = 72/440 (16%)

Query: 21  QLSLLHQSPR--------LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNE 72
            LSLLH SP         L +  S  +LKQ HA ++KT SP   + +   ++ S+   N 
Sbjct: 4   SLSLLHVSPLHHRPSTHLLHNFTSPFELKQLHAHLLKTNSPL--SSLPLSRVASVCAFNS 61

Query: 73  IENLS------LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLK 125
             + +      L   +V  +N  ++  +  + P +AI+L+  +    + P+ YT  +VLK
Sbjct: 62  SFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLK 121

Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------- 176
           AC +   +R G+ VH Y  K  L SN+++ N ++ LYA+CG I    K+F          
Sbjct: 122 ACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVIT 181

Query: 177 --------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
                               F + P  +R++ SWT++I  Y +     EAI  F +M  A
Sbjct: 182 WNIMIARLVKMGDAEGAYKLFAEMP--ERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDA 239

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            L P+ + +V VL AC+ +G+L LG +IH +   N      ++ + N LIDMY+KCG + 
Sbjct: 240 GLLPNEVTVVAVLVACADMGNLVLGRRIHDF--SNRSGYEKNIRVCNTLIDMYVKCGCLE 297

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A ++FD M  + VVSW++MIAGL   G+ ++AL +F +M   G+KP+  T + +L++C+
Sbjct: 298 DACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACS 357

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIG-----NALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           ++G +E G+     + +++    G +        +VD++++ G + +A     +M     
Sbjct: 358 HMGMVEKGRKYFASMTRDY----GIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMP---- 409

Query: 392 YSYTAMIVGLAIHGKAWKAL 411
                    +A +G  W AL
Sbjct: 410 ---------IAPNGVVWGAL 420


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/610 (34%), Positives = 351/610 (57%), Gaps = 32/610 (5%)

Query: 1   MASPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL 60
           M S L V + S  +    F++   L   P+     ++ Q+KQ HA II+     H+   +
Sbjct: 1   MTSSLPVRAPSWVSSRRIFEER--LQDLPK---CANLNQVKQLHAQIIRRN--LHEDLHI 53

Query: 61  YDKIISLSRGNEIENLSL------QNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGL 113
             K+IS        NL++      Q P V+L N +I+    N+ P +A  ++ EM   GL
Sbjct: 54  APKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGL 113

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL--IKAV 171
             + +T P++LKAC     L V + +H +  K  L S++YV N L+  Y+ CG   ++  
Sbjct: 114 FADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDA 173

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
            KLF       ++RD VSW +++   VK     +A   F +M Q +L    +    +L  
Sbjct: 174 MKLFE----KMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDL----ISWNTMLDG 225

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--KN 289
            ++  ++S   ++   + +       +    + ++  Y K G++  AR +FD+MP+  KN
Sbjct: 226 YARCREMSKAFELFEKMPER------NTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKN 279

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           VV+W  +IAG   +G  KEA  +  +M   GLK D   ++ +L +C   G L LG  +H+
Sbjct: 280 VVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHS 339

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
            L ++++ ++ ++ NAL+DMYAKCG + +AF VF  +  +D+ S+  M+ GL +HG   +
Sbjct: 340 ILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKE 399

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           A+++FS M + GI PD+VTF+ VL +C+HAGL++EG  +F  M +VY+L PQ EHYGC+V
Sbjct: 400 AIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLV 459

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL GR G ++EA+ ++++MP+ P+  +WGALLGAC++H +V++A+ V++NLV+ +P   G
Sbjct: 460 DLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPG 519

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y L++NIY++   W+    +R KMK   V+K  G S VE+    +EF   DKSHPK+ +
Sbjct: 520 NYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQ 579

Query: 590 IYKLLDEIMH 599
           IY++L  ++ 
Sbjct: 580 IYQMLGSLIE 589


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/483 (40%), Positives = 299/483 (61%), Gaps = 20/483 (4%)

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL-----IKAVHKLFHFRQHPQAQ 184
           + SL   +Q HA  ++T  L + Y+  +L++ YA          ++  ++F F + P   
Sbjct: 65  TTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKP--- 121

Query: 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI 244
            ++  W  +I+  ++ + P +AIL +++M  A+ RP+      VL ACS  G ++ G+++
Sbjct: 122 -NVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQV 180

Query: 245 HRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
           H ++  +   L  D  I ++ I MY   G +  AR++ D+   +        +     +G
Sbjct: 181 HAHLVKH--GLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEV-----DAVCMPDRKG 233

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
            F EAL+IF +MQ   ++P  F L  VL++CAN+G L+ G+W+HTY  +N I  DG +G 
Sbjct: 234 CFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGT 293

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
           +LVDMYAKCGRID A+ VF  M  ++V S+ AMI GLA+HG+A  A+D+FS+M    I P
Sbjct: 294 SLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INP 350

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           +E+TFVGVL+AC+H GLV++G   F  M + Y ++PQ EHYGC+VDL GRAGL+ EA  +
Sbjct: 351 NEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKV 410

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
           + S+P  P   VWGALLGAC+ H  VEL E V + L+  EP+  G Y L++NIY+   RW
Sbjct: 411 VSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRW 470

Query: 545 KEALKLRKKMKERKVKKTPGCSLVEV-YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603
           +E  ++RK MKER +K TPG S++++  GE ++F  GD SHP+  +IY++LD++  + + 
Sbjct: 471 EEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQM 530

Query: 604 HGY 606
            GY
Sbjct: 531 EGY 533



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 143/536 (26%), Positives = 243/536 (45%), Gaps = 85/536 (15%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQHQ----------TQILYDKIISLSRGNEIENLSLQNP 81
           + + S+  LKQ HA I++TG  Q              +  ++ +S      + +  ++ P
Sbjct: 63  QCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDF-VRKP 121

Query: 82  QVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V+L+N +I+ C+ N  P +AI LY EM++    PN YT P VLKAC  +  +  G QVH
Sbjct: 122 NVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVH 181

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           A+ +K  L  + ++ ++ +R+YA  G +    ++   +     + D V        ++  
Sbjct: 182 AHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDK---GGEVDAVCMPDRKGCFM-- 236

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               EA+  F  M +  +RP   +L  VLSAC+ LG L  G  IH Y   N   L  D  
Sbjct: 237 ----EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQL--DGV 290

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           +  +L+DMY KCG I  A +VF++M  K V SWN+MI GL   G+ ++A+D+F +M    
Sbjct: 291 LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD--- 347

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQA 379
           + P++ T V VLN+CA+ G ++ G  +   + K + +         +VD+  + G + +A
Sbjct: 348 INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEA 407

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             V                                  +S +  EP    +  +L AC   
Sbjct: 408 EKV----------------------------------VSSIPTEPTPAVWGALLGACRKH 433

Query: 440 GLVEEGCKHFLDMSRV-YNLQPQTE-HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           G VE G +    + ++   L+PQ    Y  + +++ +AG   E  ++ K M         
Sbjct: 434 GNVELGER----VGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTP 489

Query: 498 GAL---LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
           G     LG  ++H  +                GDG++  + +IY   ++ KE L++
Sbjct: 490 GTSIIDLGRGEVHKFI---------------IGDGSHPQVKDIYQMLDKVKERLQM 530


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/512 (38%), Positives = 306/512 (59%), Gaps = 10/512 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI L+ +M + G +P+ +T   VL AC +   L +G+Q+H+  ++  L  +V V  +L+
Sbjct: 34  DAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLV 93

Query: 160 RLYAVC---GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM-DYPTEAILSFFDMCQ 215
            +YA C   G +    K+F   Q P+   +++SWT +I AY +  +   EAI  F  M  
Sbjct: 94  DMYAKCAADGSVDDSRKVF--EQMPE--HNVMSWTAIITAYAQSGECDKEAIELFCKMIS 149

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
            ++RP+      VL AC  L D   G +++ Y       ++    + N+LI MY + G +
Sbjct: 150 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK--LGIASVNCVGNSLISMYARSGRM 207

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             ARK FD +  KN+VS+N+++ G     + +EA  +F  +   G+    FT   +L+  
Sbjct: 208 EDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGA 267

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A+IG +  G+ +H  L K    ++  I NAL+ MY++CG I+ AF VF  M+ R+V S+T
Sbjct: 268 ASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWT 327

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI G A HG A +AL++F +M + G +P+E+T+V VLSACSH G++ EG KHF  M + 
Sbjct: 328 SMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKE 387

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + + P+ EHY CMVDL GR+GL+ EA++ I SMPL+ DA VW  LLGAC++H   EL   
Sbjct: 388 HGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRH 447

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             E ++  EP+   AYIL++N+++S  +WK+ +K+RK MKER + K  GCS +EV    +
Sbjct: 448 AAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVH 507

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F  G+ SHP+  +IY+ LD++  + K  GYI
Sbjct: 508 RFHVGETSHPQAWQIYQELDQLASKIKEMGYI 539



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 182/358 (50%), Gaps = 39/358 (10%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           +R+LV+WT +I  + ++    +AI  F DM  +   PD      VLSAC++LG L+LG +
Sbjct: 13  ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ 72

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKC---GNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           +H  +      L+ DV +  +L+DMY KC   G++  +RKVF++MP  NV+SW ++I   
Sbjct: 73  LHSRVI--RLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 130

Query: 301 THRGQF-KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
              G+  KEA+++F +M    ++P+ F+   VL +C N+     G+ V++Y  K  I + 
Sbjct: 131 AQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASV 190

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             +GN+L+ MYA+ GR++ A   F  +  +++ SY A++ G A + K+ +A  +F+E++ 
Sbjct: 191 NCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIAD 250

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEG------------------CKHFLDM-SRVYNLQP 460
            GI     TF  +LS  +  G + +G                  C   + M SR  N++ 
Sbjct: 251 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 310

Query: 461 QTEHYGCMVDL-----------FGRAGLIREALDLIKSM---PLVPDAFVWGALLGAC 504
             + +  M D            F + G    AL++   M      P+   + A+L AC
Sbjct: 311 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 368



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 96/165 (58%), Gaps = 4/165 (2%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A KVFD+MP +N+V+W  MI      G  ++A+D+F  M+  G  PD FT   VL++C  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC---GRIDQAFGVFRSMKCRDVYSY 394
           +G L LGK +H+ + +  +  D  +G +LVDMYAKC   G +D +  VF  M   +V S+
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 395 TAMIVGLAIHGKAWK-ALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           TA+I   A  G+  K A+++F +M    I P+  +F  VL AC +
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 168



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 58/359 (16%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           YN I+   + N    EA  L+ E+   G+  + +T   +L       ++  G+Q+H   +
Sbjct: 225 YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 284

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K    SN  + N L+ +Y+ CG I+A  ++F    +    R+++SWT++I  + K  + T
Sbjct: 285 KGGYKSNQCICNALISMYSRCGNIEAAFQVF----NEMEDRNVISWTSMITGFAKHGFAT 340

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A+  F  M +   +P+ +  V VLSACS +G +S G K        HFN          
Sbjct: 341 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQK--------HFN---------- 382

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
              MY + G +P                +  M+  L   G   EA++    M    L  D
Sbjct: 383 --SMYKEHGIVPRMEH------------YACMVDLLGRSGLLVEAMEFINSMP---LMAD 425

Query: 325 DFTLVCVLNSCANIGWLELGK-WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
                 +L +C   G  ELG+      L++   +   +I   L +++A  G+      + 
Sbjct: 426 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYI--LLSNLHASAGQWKDVVKIR 483

Query: 384 RSMKCRDVYSYTAMI------------VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           +SMK R++                   VG   H +AW+   I+ E+ Q+  +  E+ ++
Sbjct: 484 KSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQ---IYQELDQLASKIKEMGYI 539



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 9/130 (6%)

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A+ VF  M  R++ ++T MI   A  G A  A+D+F +M   G  PD  T+  VLSAC+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTE-HYGC-MVDLFGRA---GLIREALDLIKSMPLVPD 493
            GL+  G +     SRV  L    +   GC +VD++ +    G + ++  + + MP   +
Sbjct: 64  LGLLALGKQLH---SRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHN 119

Query: 494 AFVWGALLGA 503
              W A++ A
Sbjct: 120 VMSWTAIITA 129


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/566 (37%), Positives = 325/566 (57%), Gaps = 19/566 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRG---NEIENLSLQNPQVYL 85
           L+ SK+  Q+ Q HA +I T   S       L D ++S +      E+    +  P  ++
Sbjct: 18  LQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFI 77

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
            N +++C + ++ P  A+  Y EM  KGLL + YT P+VLKAC     L  G  V   ++
Sbjct: 78  CNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAV 137

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K     +V+V N L+ +Y  CG       +F       +++DLVSW +++  YV      
Sbjct: 138 KRGFGGDVFVVNGLISMYCRCGETGWARAVFD----GFSEKDLVSWNSMLGGYVWCGEME 193

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A   F +M + ++       +++     K+G+++      R   D+    + D+   N+
Sbjct: 194 NAQNMFDEMPERDVVSWS---IMIDGYGKKMGEVNRA----RVFFDSM--PTRDLVSWNS 244

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           +ID Y K G +  AR++FB+M  KNV+SW+ MI G       KEAL++FR+M   G+KPD
Sbjct: 245 MIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPD 304

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             ++V  +++C+ +G L+ G+W+H Y+ +N +  D  +  ALVDMY KCG  D+A  +F 
Sbjct: 305 RVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFN 364

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
           SM  R+V S+  MIVGL ++G   +AL+ F +M    I  D++ F+GVL ACSHA LV E
Sbjct: 365 SMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTE 424

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G   F  M  VY L+P+ EHYGC+VDL GRAG + +  ++I+SMP+ P+A +WG+LL AC
Sbjct: 425 GLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLAC 484

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           +IH  V LAEIV+E L   + +  G Y+LM+NIY+    W+  L++RK MKERK+KK  G
Sbjct: 485 RIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIG 544

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEI 590
            S++EV G   EF  G+KSH    EI
Sbjct: 545 RSVIEVDGNVEEFVSGEKSHILREEI 570


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/512 (38%), Positives = 306/512 (59%), Gaps = 10/512 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI L+ +M + G +P+ +T   VL AC +   L +G+Q+H+  ++  L  +V V  +L+
Sbjct: 39  DAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLV 98

Query: 160 RLYAVC---GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM-DYPTEAILSFFDMCQ 215
            +YA C   G +    K+F   Q P+   +++SWT +I AY +  +   EAI  F  M  
Sbjct: 99  DMYAKCAADGSVDDSRKVF--EQMPE--HNVMSWTAIITAYAQSGECDKEAIELFCKMIS 154

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
            ++RP+      VL AC  L D   G +++ Y       ++    + N+LI MY + G +
Sbjct: 155 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK--LGIASVNCVGNSLISMYARSGRM 212

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             ARK FD +  KN+VS+N+++ G     + +EA  +F  +   G+    FT   +L+  
Sbjct: 213 EDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGA 272

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A+IG +  G+ +H  L K    ++  I NAL+ MY++CG I+ AF VF  M+ R+V S+T
Sbjct: 273 ASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWT 332

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI G A HG A +AL++F +M + G +P+E+T+V VLSACSH G++ EG KHF  M + 
Sbjct: 333 SMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKE 392

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + + P+ EHY CMVDL GR+GL+ EA++ I SMPL+ DA VW  LLGAC++H   EL   
Sbjct: 393 HGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRH 452

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             E ++  EP+   AYIL++N+++S  +WK+ +K+RK MKER + K  GCS +EV    +
Sbjct: 453 AAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVH 512

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F  G+ SHP+  +IY+ LD++  + K  GYI
Sbjct: 513 RFHVGETSHPQAWQIYQELDQLASKIKEMGYI 544



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 182/358 (50%), Gaps = 39/358 (10%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           +R+LV+WT +I  + ++    +AI  F DM  +   PD      VLSAC++LG L+LG +
Sbjct: 18  ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ 77

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKC---GNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           +H  +      L+ DV +  +L+DMY KC   G++  +RKVF++MP  NV+SW ++I   
Sbjct: 78  LHSRVI--RLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 135

Query: 301 THRGQF-KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
              G+  KEA+++F +M    ++P+ F+   VL +C N+     G+ V++Y  K  I + 
Sbjct: 136 AQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASV 195

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             +GN+L+ MYA+ GR++ A   F  +  +++ SY A++ G A + K+ +A  +F+E++ 
Sbjct: 196 NCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIAD 255

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEG------------------CKHFLDM-SRVYNLQP 460
            GI     TF  +LS  +  G + +G                  C   + M SR  N++ 
Sbjct: 256 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 315

Query: 461 QTEHYGCMVDL-----------FGRAGLIREALDLIKSM---PLVPDAFVWGALLGAC 504
             + +  M D            F + G    AL++   M      P+   + A+L AC
Sbjct: 316 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 373



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 96/165 (58%), Gaps = 4/165 (2%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A KVFD+MP +N+V+W  MI      G  ++A+D+F  M+  G  PD FT   VL++C  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC---GRIDQAFGVFRSMKCRDVYSY 394
           +G L LGK +H+ + +  +  D  +G +LVDMYAKC   G +D +  VF  M   +V S+
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 395 TAMIVGLAIHGKAWK-ALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           TA+I   A  G+  K A+++F +M    I P+  +F  VL AC +
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 173



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 58/359 (16%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           YN I+   + N    EA  L+ E+   G+  + +T   +L       ++  G+Q+H   +
Sbjct: 230 YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 289

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K    SN  + N L+ +Y+ CG I+A  ++F    +    R+++SWT++I  + K  + T
Sbjct: 290 KGGYKSNQCICNALISMYSRCGNIEAAFQVF----NEMEDRNVISWTSMITGFAKHGFAT 345

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A+  F  M +   +P+ +  V VLSACS +G +S G K        HFN          
Sbjct: 346 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQK--------HFN---------- 387

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
              MY + G +P                +  M+  L   G   EA++    M    L  D
Sbjct: 388 --SMYKEHGIVPRMEH------------YACMVDLLGRSGLLVEAMEFINSMP---LMAD 430

Query: 325 DFTLVCVLNSCANIGWLELGK-WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
                 +L +C   G  ELG+      L++   +   +I   L +++A  G+      + 
Sbjct: 431 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYI--LLSNLHASAGQWKDVVKIR 488

Query: 384 RSMKCRDVYSYTAMI------------VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           +SMK R++                   VG   H +AW+   I+ E+ Q+  +  E+ ++
Sbjct: 489 KSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQ---IYQELDQLASKIKEMGYI 544



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 9/130 (6%)

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A+ VF  M  R++ ++T MI   A  G A  A+D+F +M   G  PD  T+  VLSAC+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTE-HYGC-MVDLFGRA---GLIREALDLIKSMPLVPD 493
            GL+  G +     SRV  L    +   GC +VD++ +    G + ++  + + MP   +
Sbjct: 69  LGLLALGKQLH---SRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHN 124

Query: 494 AFVWGALLGA 503
              W A++ A
Sbjct: 125 VMSWTAIITA 134


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/525 (36%), Positives = 305/525 (58%), Gaps = 38/525 (7%)

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +  P +  +N +I+  S ++ P EAI +Y  M  +GLL N  T  ++ KAC +   +  G
Sbjct: 37  IHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARVPDVSCG 96

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
             +HA  +K    S++YV N L+ +Y  CG +    K+F        +RDLVSW +L+  
Sbjct: 97  STIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFD----EMPERDLVSWNSLVCG 152

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y +     E +  F  M  A ++ D + +V V+ AC+ LG+  +   +  YI +N  N+ 
Sbjct: 153 YGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEEN--NVE 210

Query: 257 PDVFIHNALIDMYL-------------------------------KCGNIPSARKVFDEM 285
            DV++ N LIDMY                                K GN+ +AR++FD M
Sbjct: 211 IDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAM 270

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             ++V+SW +MI   +  GQF EAL +F+ M    +KPD+ T+  VL++CA+ G L++G+
Sbjct: 271 SQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGE 330

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
             H Y+ K  +  D ++GNAL+DMY KCG +++A  VF+ M+ +D  S+T++I GLA++G
Sbjct: 331 AAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNG 390

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
            A  ALD FS M +  ++P    FVG+L AC+HAGLV++G ++F  M +VY L+P+ +HY
Sbjct: 391 FADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHY 450

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
           GC+VDL  R+G ++ A + IK MP+ PD  +W  LL A ++H  + LAEI  + L+  +P
Sbjct: 451 GCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAEIATKKLLELDP 510

Query: 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
              G Y+L +N Y+  NRW++A+K+R+ M++  V+K  G S +E+
Sbjct: 511 SNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIEM 555



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 200/389 (51%), Gaps = 40/389 (10%)

Query: 157 TLMRLYAVC-GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
            L++ YA+    I   H LF     P     L  W  +I+ +   D P EAI  +  M +
Sbjct: 15  NLIKSYALSPSTILKAHNLFQQIHRPT----LPFWNIMIRGWSVSDQPNEAIRMYNLMYR 70

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             L  + +  + +  AC+++ D+S G  IH  +    F     +++ NALI+MY  CG++
Sbjct: 71  QGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGF--ESHLYVSNALINMYGSCGHL 128

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A+KVFDEMP +++VSWNS++ G     +F+E L +F  M+  G+K D  T+V V+ +C
Sbjct: 129 GLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLAC 188

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
            ++G   +   +  Y+++N++  D ++GN L+DMY + G +  A GVF  M+ R++ S+ 
Sbjct: 189 TSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWN 248

Query: 396 AMIVGLAIHGK-----------------AW--------------KALDIFSEMSQVGIEP 424
           AMI+G    G                  +W              +AL +F EM +  ++P
Sbjct: 249 AMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKP 308

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           DE+T   VLSAC+H G ++ G +   D  + Y+++        ++D++ + G++ +AL++
Sbjct: 309 DEITVASVLSACAHTGSLDVG-EAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEV 367

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKVELA 513
            K M    D+  W +++    ++   + A
Sbjct: 368 FKEMR-KKDSVSWTSIISGLAVNGFADSA 395



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 139/305 (45%), Gaps = 15/305 (4%)

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           I+N +    L    I  A  +F ++    +  WN MI G +   Q  EA+ ++  M   G
Sbjct: 13  IYNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQG 72

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           L  ++ T + +  +CA +  +  G  +H  + K    +  ++ NAL++MY  CG +  A 
Sbjct: 73  LLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQ 132

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  M  RD+ S+ +++ G     +  + L +F  M   G++ D VT V V+ AC+  G
Sbjct: 133 KVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLG 192

Query: 441 LVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
             E G     +D     N++        ++D++GR GL+  A  +   M    +   W A
Sbjct: 193 --EWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQW-RNLVSWNA 249

Query: 500 L-LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI---YSSKNRWKEALKLRKKMK 555
           + +G  K    V   E+       F+       I  TN+   YS   ++ EAL+L K+M 
Sbjct: 250 MIMGYGKAGNLVAAREL-------FDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMM 302

Query: 556 ERKVK 560
           E KVK
Sbjct: 303 ESKVK 307



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 6/240 (2%)

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTL 120
           Y K  +L    E+ +   Q   +   N I          EA+ L++EM+   + P+  T+
Sbjct: 254 YGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITV 313

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
             VL AC  + SL VG+  H Y  K  + +++YV N L+ +Y  CG+++   ++F     
Sbjct: 314 ASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVF----K 369

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
              ++D VSWT++I       +   A+  F  M +  ++P     V +L AC+  G +  
Sbjct: 370 EMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDK 429

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAG 299
           G++    + +  + L P++  +  ++D+  + GN+  A +   EMPV  +VV W  +++ 
Sbjct: 430 GLEYFESM-EKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSA 488


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/547 (38%), Positives = 318/547 (58%), Gaps = 23/547 (4%)

Query: 75  NLSLQNPQVYLYNFIIQCLS----NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQS 130
           N       VY +N +I  L+    +   L A +  R++ IK   PN  T P  +K+C   
Sbjct: 39  NKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIK---PNRSTFPCAIKSCSAL 95

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
             L  G+Q H  ++     S+++V + L+ +Y+ CG +     LF   + P+  R++V+W
Sbjct: 96  FDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFD--EIPR--RNIVTW 151

Query: 191 TTLIQAYVKMDYPTEAILSF----FDMCQAN-----LRPDGMILVIVLSACSKLGDLSLG 241
           T+LI  YV+ D   EA++ F    F+  + N        D + ++ VLSACS++ + ++ 
Sbjct: 152 TSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVS 211

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
             +H         L   + + N L+D Y KCG +  +RKVFD+M  K+VVSWNSMIA   
Sbjct: 212 EGVHGVAIK--VGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYA 269

Query: 302 HRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
             G   +A ++F  M +  G K ++ TL  +L +CA+ G L +G  +H  + K     + 
Sbjct: 270 QNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNV 329

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            +  +++DMY KCG+ + A   F  MK ++V S+TAMI G  +HG A +ALD+F +M   
Sbjct: 330 IMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWA 389

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
           G++P+ +TF+ VL+ACSHAG +EEG + F  MS  YN++P  EHYGCMVDL GRAG I+E
Sbjct: 390 GVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKE 449

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540
           A +LIKSM +  D  +WG+LL AC+IH  VELAEI    L + +P   G Y+L+ NIY+ 
Sbjct: 450 AYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYAD 509

Query: 541 KNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
             RWK+  ++R  +K+R + K PG SLVE+ G  + F  GDK HP+  +IYK L+E+  +
Sbjct: 510 AGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVK 569

Query: 601 SKNHGYI 607
            +  GY+
Sbjct: 570 LQEAGYV 576


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/553 (35%), Positives = 316/553 (57%), Gaps = 31/553 (5%)

Query: 58  QILYDKIISLSRGNEIENL--SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLL 114
           +I+ +K I   R      L   L +  V  +N +I   +SN      + +Y++M+  G+ 
Sbjct: 189 KIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGID 248

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
            +  T+  VL  C  S +L +G+ VH+ ++K+     +   NTL+ +Y+ CG +    ++
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRV 308

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F        +R++VSWT++I  Y +      AI     M +  ++ D +    +L AC++
Sbjct: 309 FE----KMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACAR 364

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
            G L  G  +H YI  N  N+  ++F+ NAL+DMY KCG++  A  VF  M VK+++SWN
Sbjct: 365 SGSLDNGKDVHDYIKAN--NMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWN 422

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           +MI  L                     KPD  T+ C+L +CA++  LE GK +H Y+ +N
Sbjct: 423 TMIGEL---------------------KPDSRTMACILPACASLSALERGKEIHGYILRN 461

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
             ++D  + NALVD+Y KCG +  A  +F  +  +D+ S+T MI G  +HG   +A+  F
Sbjct: 462 GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATF 521

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           +EM   GIEPDEV+F+ +L ACSH+GL+E+G + F  M   +N++P+ EHY CMVDL  R
Sbjct: 522 NEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSR 581

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
            G + +A + I+++P+ PDA +WGALL  C+I+  +ELAE V E +   EPE  G Y+L+
Sbjct: 582 TGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLL 641

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDK-SHPKTLEIYKL 593
            NIY+   +W+E  ++R+K+ ++ ++K PGCS +E+ G+   F  G+  SHP + +I  L
Sbjct: 642 ANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESL 701

Query: 594 LDEIMHQSKNHGY 606
           L ++  + K  GY
Sbjct: 702 LKKMRRKMKEEGY 714



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 197/443 (44%), Gaps = 80/443 (18%)

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
           T T   VL+ C  S+SL  G++VH+      +  +  +   L+ LYA CG +K   ++F 
Sbjct: 99  TKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFD 158

Query: 177 ----------------------FRQ----------------HPQA---------QRDLVS 189
                                 F++                 P++          RD++S
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVIS 218

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W ++I  YV        +  +  M    +  D   ++ VL  C+  G LSLG  +H    
Sbjct: 219 WNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
            + F     +   N L+DMY KCG++  A +VF++M  +NVVSW SMIAG T  G+   A
Sbjct: 279 KSTFERR--INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           + + ++M+  G+K D      +L++CA  G L+ GK VH Y+  N++ ++ F+ NAL+DM
Sbjct: 337 IRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDM 396

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           Y KCG +D A  VF +M  +D+ S+  MI  L                     +PD  T 
Sbjct: 397 YTKCGSMDGANSVFSTMVVKDIISWNTMIGEL---------------------KPDSRTM 435

Query: 430 VGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLF---GRAGLIREALDLI 485
             +L AC+    +E G + H   +   Y+      +   +VDL+   G  GL R   D+I
Sbjct: 436 ACILPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMI 493

Query: 486 KSMPLVPDAFVWGALLGACKIHA 508
            S  LV     W  ++    +H 
Sbjct: 494 PSKDLVS----WTVMISGYGMHG 512



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 101/252 (40%), Gaps = 54/252 (21%)

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           + V  +N+ I      G  + A+++    Q   L+   ++   VL  CA    L  GK V
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTYS--SVLQLCAGSKSLTDGKKV 121

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-------------------- 387
           H+ +  N++  D  +G  LV +YA CG + +   VF +M+                    
Sbjct: 122 HSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDF 181

Query: 388 ----C---------------------------RDVYSYTAMIVGLAIHGKAWKALDIFSE 416
               C                           RDV S+ +MI G   +G   + L+I+ +
Sbjct: 182 KESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQ 241

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M  +GI+ D  T + VL  C+++G +  G K    ++     + +      ++D++ + G
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSTFERRINFSNTLLDMYSKCG 300

Query: 477 LIREALDLIKSM 488
            +  AL + + M
Sbjct: 301 DLDGALRVFEKM 312


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/603 (35%), Positives = 331/603 (54%), Gaps = 20/603 (3%)

Query: 24  LLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNE----IENLSLQ 79
           +L ++P    S S  Q KQ HA I+KT    H   IL   + S     +    + N    
Sbjct: 12  ILRKTPNKTLSVSTRQAKQLHAHIVKTKGTLHSDNILVLSLYSNLNLLQHSLHLFNSLPS 71

Query: 80  NPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
            P    ++ II+C ++ + L  + + +  M    + PN +  P +LKA    +  ++   
Sbjct: 72  PPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHS 131

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ-----------RDL 187
           +HA +++  L S++Y+ N L+  YA       V  +F  R                 RD+
Sbjct: 132 LHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDV 191

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
           VSW T+I  + +     EA+    +M +   L+PD   L  +L   ++  D++ G +IH 
Sbjct: 192 VSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHG 251

Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
           Y   N F+   DVFI ++LIDMY KC  +  + + F  +P K+ +SWNS+IAG    G+F
Sbjct: 252 YAVRNGFD--GDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEF 309

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
              L  FRRM    +KP   +   V+ +CA++  L LG+ +H  + +   + + FI ++L
Sbjct: 310 DRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSL 369

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           VDMYAKCG I  A  VF  +  RD+ ++TA+I+G A+HG A  A+ +F  M + G+ P  
Sbjct: 370 VDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCY 429

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           V F+ VL+ACSHAGLV+EG ++F  M R + + P  EHY  + DL GRAG + EA D I 
Sbjct: 430 VAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFIS 489

Query: 487 SMPLV-PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
           +M  V P   VW  LL AC+ H  VELAE V++ L+  + E  GAY+LM+NIYS+  RWK
Sbjct: 490 NMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWK 549

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           +A +LR  M+++ +KKTP CS +EV  + + F  GDKSHP   +I K LD ++ Q +  G
Sbjct: 550 DAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEG 609

Query: 606 YIL 608
           Y++
Sbjct: 610 YVI 612


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/531 (37%), Positives = 309/531 (58%), Gaps = 14/531 (2%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLE---AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
           LQ   + L++ +I   S    L    +   YR M   G++P+ +T P +LKA ++   LR
Sbjct: 62  LQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFK---LR 118

Query: 135 VGQ--QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
                Q HA+ +K  L S+ +V N+L+  Y+  GL     +LF   +     +D+V+WT 
Sbjct: 119 DSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAE----DKDVVTWTA 174

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           +I  +V+    +EA++ F +M +  +  + M +V VL A  K+ D+  G  +H    +  
Sbjct: 175 MIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETG 234

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
             +  DVFI ++L+DMY KC     A+KVFDEMP +NVV+W ++IAG      F + + +
Sbjct: 235 -RVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLV 293

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F  M    + P++ TL  VL++CA++G L  G+ VH Y+ KN I  +   G  L+D+Y K
Sbjct: 294 FEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVK 353

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           CG +++A  VF  +  ++VY++TAMI G A HG A  A D+F  M    + P+EVTF+ V
Sbjct: 354 CGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAV 413

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           LSAC+H GLVEEG + FL M   +N++ + +HY CMVDLFGR GL+ EA  LI+ MP+ P
Sbjct: 414 LSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEP 473

Query: 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552
              VWGAL G+C +H   EL +     +++ +P   G Y L+ N+YS    W E  ++RK
Sbjct: 474 TNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRK 533

Query: 553 KMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP-KTLEIYKLLDEIMHQSK 602
           +MK+++V K+PG S +EV G+  EF   D   P ++ ++YK LD +  Q +
Sbjct: 534 QMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTVGVQMR 584


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/500 (38%), Positives = 286/500 (57%), Gaps = 7/500 (1%)

Query: 107 EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
           ++L++G  PN YT   +LK C     L  G+ +H   +K+ +  + +++N+L+ +YA CG
Sbjct: 181 QLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCG 240

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
                 K+F   + P+  RD+VSWT LI  +V   Y +  +  F  M      P+    +
Sbjct: 241 SANYACKVF--GEIPE--RDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFI 295

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
            +L +CS L D+ LG ++H  I  N  +L  + F+  AL+DMY K   +  A  +F+ + 
Sbjct: 296 SILRSCSSLSDVDLGKQVHAQIVKN--SLDGNDFVGTALVDMYAKNRFLEDAETIFNRLI 353

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
            +++ +W  ++AG    GQ ++A+  F +MQ  G+KP++FTL   L+ C+ I  L+ G+ 
Sbjct: 354 KRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ 413

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           +H+   K   + D F+ +ALVDMYAKCG ++ A  VF  +  RD  S+  +I G + HG+
Sbjct: 414 LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQ 473

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
             KAL  F  M   G  PDEVTF+GVLSACSH GL+EEG KHF  +S++Y + P  EHY 
Sbjct: 474 GGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYA 533

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CMVD+ GRAG   E    I+ M L  +  +W  +LGACK+H  +E  E     L   EPE
Sbjct: 534 CMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPE 593

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
            D  YIL++N++++K  W +   +R  M  R VKK PGCS VEV G+ + F   D SHPK
Sbjct: 594 IDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPK 653

Query: 587 TLEIYKLLDEIMHQSKNHGY 606
             EI+  L ++  +  + GY
Sbjct: 654 IREIHLKLQDLHQKLMSVGY 673



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 219/455 (48%), Gaps = 19/455 (4%)

Query: 60  LYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLSNAN---PL-EAIALYREMLIKGLL 114
           +Y K  SL    ++ E + +Q+ Q +      Q LS+AN   PL EA+ L+  M    + 
Sbjct: 33  VYVKCESLQCARQVLEEMPIQDVQQW-----NQKLSSANSPYPLQEAVQLFYLMRHTRIR 87

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
            N +    ++ A         G+ +HA   K    S++ + N  + +Y      ++V   
Sbjct: 88  LNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMK---TQSVENG 144

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           + F +    + +L S   L+  +   +   +       +      P+    + +L  C+ 
Sbjct: 145 WQFFKAMMIE-NLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCAS 203

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
            GDL+ G  IH  +  +  N  PD  + N+L+++Y KCG+   A KVF E+P ++VVSW 
Sbjct: 204 KGDLNEGKAIHGQVIKSGIN--PDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWT 261

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           ++I G    G +   L IF +M   G  P+ +T + +L SC+++  ++LGK VH  + KN
Sbjct: 262 ALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN 320

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            ++ + F+G ALVDMYAK   ++ A  +F  +  RD++++T ++ G A  G+  KA+  F
Sbjct: 321 SLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCF 380

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            +M + G++P+E T    LS CS    ++ G +    M+              +VD++ +
Sbjct: 381 IQMQREGVKPNEFTLASSLSGCSRIATLDSG-RQLHSMAIKAGQSGDMFVASALVDMYAK 439

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
            G + +A +++    +  D   W  ++     H +
Sbjct: 440 CGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQHGQ 473



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 188/378 (49%), Gaps = 43/378 (11%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
            + ++ +ML +G  PN YT   +L++C     + +G+QVHA  +K +L  N +V   L+ 
Sbjct: 275 GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVD 334

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +YA    ++    +F    +   +RDL +WT ++  Y +     +A+  F  M +  ++P
Sbjct: 335 MYAKNRFLEDAETIF----NRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKP 390

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           +   L   LS CS++  L  G ++H          S D+F+ +AL+DMY KCG +  A  
Sbjct: 391 NEFTLASSLSGCSRIATLDSGRQLHSMAIKA--GQSGDMFVASALVDMYAKCGCVEDAEV 448

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VFD +  ++ VSWN++I G +  GQ  +AL  F  M   G  PD+ T + VL++C+++G 
Sbjct: 449 VFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGL 508

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           +E G        K H N+                 + + +G+  +++      Y  M+  
Sbjct: 509 IEEG--------KKHFNS-----------------LSKIYGITPTIE-----HYACMV-- 536

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
             I G+A K  ++ S + ++ +  + + +  VL AC   G +E G +  +   +++ L+P
Sbjct: 537 -DILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAM---KLFELEP 592

Query: 461 QTE-HYGCMVDLFGRAGL 477
           + + +Y  + ++F   G+
Sbjct: 593 EIDSNYILLSNMFAAKGM 610



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 187/386 (48%), Gaps = 16/386 (4%)

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K  +  + +++++L+ +Y  C  ++   ++          +D+  W   + +     YP
Sbjct: 16  IKNGICPDSHLWSSLVNVYVKCESLQCARQVLE----EMPIQDVQQWNQKLSS-ANSPYP 70

Query: 204 -TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             EA+  F+ M    +R +  I   ++SA + LGD   G  IH  +    +    D+ I 
Sbjct: 71  LQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCK--YGFESDILIS 128

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           NA + MY+K  ++ +  + F  M ++N+ S N++++G        +   I  ++   G +
Sbjct: 129 NAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFE 188

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P+ +T + +L +CA+ G L  GK +H  + K+ IN D  + N+LV++YAKCG  + A  V
Sbjct: 189 PNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKV 248

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F  +  RDV S+TA+I G    G     L IF++M   G  P+  TF+ +L +CS    V
Sbjct: 249 FGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDV 307

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           + G +  +    V N     +  G  +VD++ +   + +A  +   + +  D F W  ++
Sbjct: 308 DLGKQ--VHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIV 364

Query: 502 GACKIHAKVELAEIVMENLVRFEPEG 527
                +A+    E  ++  ++ + EG
Sbjct: 365 AG---YAQDGQGEKAVKCFIQMQREG 387



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 124/279 (44%), Gaps = 29/279 (10%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+  + +M  +G+ PN +TL   L  C +  +L  G+Q+H+ ++K     +++V + L+
Sbjct: 375 KAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALV 434

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG ++    +F         RD VSW T+I  Y +     +A+ +F  M      
Sbjct: 435 DMYAKCGCVEDAEVVF----DGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTV 490

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  + VLSACS +G +  G K H       + ++P +  +  ++D+  + G      
Sbjct: 491 PDEVTFIGVLSACSHMGLIEEG-KKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVE 549

Query: 280 KVFDEMPV-KNVVSWNSMIAGLTHRG--QFKE--ALDIFR-------------RMQGLGL 321
              +EM +  NV+ W +++      G  +F E  A+ +F               M     
Sbjct: 550 SFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKG 609

Query: 322 KPDDFTLVCVLNSCANI------GWLELGKWVHTYLDKN 354
             DD T V  L S   +       W+E+   VH +L  +
Sbjct: 610 MWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHD 648


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/516 (37%), Positives = 298/516 (57%), Gaps = 38/516 (7%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV--CGLIKAVHKLFHFRQ 179
           ++L+ C   + LR   Q+H   +KT L+ +    + L+   A    G +     +F    
Sbjct: 23  HLLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIF 79

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
            P    +   W T+I+ Y     P EA+L +  M   ++  +      +L ACS +    
Sbjct: 80  RP----NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASE 135

Query: 240 LGIKIHR-----------YITDNHFNL------------------SPDVFIHNALIDMYL 270
              +IH            Y T++  N+                    D    N++ID Y 
Sbjct: 136 ETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYT 195

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG I  A ++F+ MP +N++SW SMI+G    G+ KEAL++F RMQ  G+K D+  LV 
Sbjct: 196 KCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVS 255

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
            L +CA++G L+ GKW+H Y+ K+ I  D  +G  L+DMYAKCG +++A  VFR M+ + 
Sbjct: 256 TLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKG 315

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           V  +TAMI G AIHG+  +AL+ F +M   G+EP+++TF G+L+ACSHAGLV E    F 
Sbjct: 316 VSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFE 375

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M R++  +P  EHYGCMVDL GRAGL++EA +LI++MP+ P+A +WGALL AC IH  +
Sbjct: 376 SMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNL 435

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           EL + + + L++ +P   G YI + +I+++   W +A ++R++MKE+ V K PGCS++ V
Sbjct: 436 ELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISV 495

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            G  +EF  GD+SHP+  EI  +L++I+ + +  GY
Sbjct: 496 NGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGY 531



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 221/469 (47%), Gaps = 64/469 (13%)

Query: 1   MASPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL 60
           MA  L   +    ++ N  Q L LL +   +E      +L+Q H  ++KTG      +I 
Sbjct: 1   MAPILCTPTSQLSSESNAAQTLHLLQRCSNME------ELRQIHGQMLKTGLIL--DEIP 52

Query: 61  YDKIISLSRGNEIENLS--------LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIK 111
             K+++        +L+        +  P  +++N +I+  SN+  P EA+ LY  ML  
Sbjct: 53  ASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYH 112

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
            +  N YT P++LKAC    +    QQ+HA+ +K    S +Y  N+L+ +Y+  G IK+ 
Sbjct: 113 SVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSA 172

Query: 172 HKLFH-----------------------------FRQHPQAQRDLVSWTTLIQAYVKMDY 202
             LF                              F   P  +R+++SWT++I   V    
Sbjct: 173 RLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMP--ERNIISWTSMISGCVGAGK 230

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
           P EA+  F  M  A ++ D + LV  L AC+ LG L  G  IH YI  +   + P   + 
Sbjct: 231 PKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDP--ILG 288

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
             LIDMY KCG++  A +VF +M  K V  W +MI+G    G+ +EAL+ F +MQ  G++
Sbjct: 289 CVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVE 348

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN-----ALVDMYAKCGRID 377
           P+  T   +L +C++ G +   K +   +++ H    GF  +      +VD+  + G + 
Sbjct: 349 PNQMTFTGILTACSHAGLVHEAKLLFESMERIH----GFKPSIEHYGCMVDLLGRAGLLK 404

Query: 378 QAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           +A  +  +M  + +   + A++    IHG     L++  ++ ++ I+ D
Sbjct: 405 EAEELIENMPVKPNAAIWGALLNACHIHGN----LELGKQIGKILIQVD 449


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/480 (38%), Positives = 290/480 (60%), Gaps = 15/480 (3%)

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK----LF---HFRQHPQAQRDLVSW 190
           Q+HA+ +KT L +N  +   L +  +    + ++H     LF   H    P    D   +
Sbjct: 36  QIHAFILKTGLQNNPLI---LTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDAFLF 92

Query: 191 TTLIQAYVKM-DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
            TLI+AY +  D  + + L +  M +  + P+      VL  C+ +G L LG  +H  + 
Sbjct: 93  NTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVV 152

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGN--IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
              F    DV + N LI MY   G      A KVFD+ P  + V+W++MIAG    G   
Sbjct: 153 --KFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSS 210

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
            A+D+FR MQ +G+ PD+ T+V VL++CA++G LELGKWV +Y++K +I     + NAL+
Sbjct: 211 RAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALI 270

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           DM+AKCG +D+A  +FR M  R + S+T++I GLA+HG+   A+ +F EM + GI PD+V
Sbjct: 271 DMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDV 330

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
            F+GVLSACSH+GLV++G  +F  M R +++ P+ EHYGCMVDL  R G ++EA + ++ 
Sbjct: 331 AFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQK 390

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
           MP  P+  +W  ++ AC    +++L E + + L++ EP  +  Y+L++NIY+   +W++ 
Sbjct: 391 MPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKK 450

Query: 548 LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            K+R+ M  R +KK PG +++EV  E YEF  GDKSH +  EIY+++DE+  + K  GY+
Sbjct: 451 TKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYV 510



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 189/369 (51%), Gaps = 25/369 (6%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIE-----------NLSLQNPQ-- 82
           ++ +L Q HAFI+KTG  Q+   IL     + S  N I              S   P   
Sbjct: 30  TLSKLTQIHAFILKTGL-QNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYD 88

Query: 83  VYLYNFIIQCLSNA--NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            +L+N +I+  S    +   +   YR ML  G+ PN +T P+VLK C    SLR+G+ VH
Sbjct: 89  AFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVH 148

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGL--IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
              +K     +V+V NTL+ +Y   G    +   K+F        + D V+W+ +I  +V
Sbjct: 149 GCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVF----DDSPKMDTVTWSAMIAGFV 204

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           ++   + A+  F +M    + PD + +V VLSAC+ LG L LG  +  Y+     N+   
Sbjct: 205 RLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKK--NIPKS 262

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           V + NALIDM+ KCGN+  A K+F +M  + +VSW S+IAGL   G+  +A+ +F  M  
Sbjct: 263 VELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVE 322

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRID 377
            G+ PDD   + VL++C++ G ++ G++    +++N  I         +VD+  + G + 
Sbjct: 323 NGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVK 382

Query: 378 QAFGVFRSM 386
           +AF   + M
Sbjct: 383 EAFEFVQKM 391


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/553 (34%), Positives = 318/553 (57%), Gaps = 31/553 (5%)

Query: 58  QILYDKIISLSRGNEIENL--SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLL 114
           +I+ +K I   R      L   L +  V  +N +I   +SN      + +Y++M+  G+ 
Sbjct: 189 KIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 248

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
            +  T+  VL  C  S +L +G+ VH+ ++K++    +   NTL+ +Y+ CG +    ++
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 308

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F        +R++VSWT++I  Y +  +   AI+    M +  ++ D + +  +L AC++
Sbjct: 309 FE----KMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACAR 364

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
            G L  G  +H YI  N  N++ ++F+ NAL+DMY KCG++  A  VF  M VK+++SWN
Sbjct: 365 SGSLDNGKDVHDYIKAN--NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWN 422

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           +M+  L                     KPD  T+ C+L +CA++  LE GK +H Y+ +N
Sbjct: 423 TMVGEL---------------------KPDSRTMACILPACASLSALERGKEIHGYILRN 461

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
             ++D  + NALVD+Y KCG +  A  +F  +  +D+ S+T MI G  +HG   +A+  F
Sbjct: 462 GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATF 521

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           +EM   GIEPDEV+F+ +L ACSH+GL+E+G + F  M   +N++P+ EHY CMVDL  R
Sbjct: 522 NEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSR 581

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
            G + +A   I+++P+ PDA +WGALL  C+I+  +ELAE V E +   EPE  G Y+L+
Sbjct: 582 TGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLL 641

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDK-SHPKTLEIYKL 593
            NIY+   + +E  ++R+K+ ++ ++K PGCS +E+ G    F  G+  SHP + +I  L
Sbjct: 642 ANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESL 701

Query: 594 LDEIMHQSKNHGY 606
           L ++  + K  GY
Sbjct: 702 LKKMRRKMKEEGY 714



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 179/378 (47%), Gaps = 49/378 (12%)

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFR-------QHPQA---------QRDLVSWTTLI 194
           NVY++N ++  YA  G  K    LF          + P++          RD++SW ++I
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMI 223

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
             YV        +  +  M    +  D   ++ VL  C+  G LSLG  +H     + F 
Sbjct: 224 SGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE 283

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
               +   N L+DMY KCG++  A +VF++M  +NVVSW SMIAG T  G    A+ + +
Sbjct: 284 RR--INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQ 341

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           +M+  G+K D   +  +L++CA  G L+ GK VH Y+  N++ ++ F+ NAL+DMYAKCG
Sbjct: 342 QMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCG 401

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            ++ A  VF +M  +D+ S+  M+  L                     +PD  T   +L 
Sbjct: 402 SMEGANSVFSTMVVKDIISWNTMVGEL---------------------KPDSRTMACILP 440

Query: 435 ACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLF---GRAGLIREALDLIKSMPL 490
           AC+    +E G + H   +   Y+      +   +VDL+   G  GL R   D+I S  L
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 491 VPDAFVWGALLGACKIHA 508
           V     W  ++    +H 
Sbjct: 499 VS----WTVMIAGYGMHG 512



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 148/334 (44%), Gaps = 55/334 (16%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL  C+ L  L+ G K+H  I  N  ++  D  +   L+  Y  CG++   R+VFD M  
Sbjct: 105 VLQLCAGLKSLTDGKKVHSIIKSN--SVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEK 162

Query: 288 KNV---------------------------------------------------VSWNSM 296
           KNV                                                   +SWNSM
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSM 222

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           I+G    G  +  L I+++M  LG+  D  T++ VL  CAN G L LGK VH+   K+  
Sbjct: 223 ISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSF 282

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
                  N L+DMY+KCG +D A  VF  M  R+V S+T+MI G    G +  A+ +  +
Sbjct: 283 ERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQ 342

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M + G++ D V    +L AC+ +G ++ G K   D  +  N+         ++D++ + G
Sbjct: 343 MEKEGVKLDVVAITSILHACARSGSLDNG-KDVHDYIKANNMASNLFVCNALMDMYAKCG 401

Query: 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            +  A  +  +M +V D   W  ++G  K  ++ 
Sbjct: 402 SMEGANSVFSTM-VVKDIISWNTMVGELKPDSRT 434



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 98/250 (39%), Gaps = 54/250 (21%)

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           V  +N+ I      G  + A+++    Q   L+    T   VL  CA +  L  GK VH+
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELVCMCQKSELETK--TYGSVLQLCAGLKSLTDGKKVHS 123

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---------------------- 387
            +  N +  D  +G  LV  YA CG + +   VF +M+                      
Sbjct: 124 IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 388 --C---------------------------RDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
             C                           RDV S+ +MI G   +G   + L I+ +M 
Sbjct: 184 SICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM 243

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
            +GI+ D  T + VL  C+++G +  G K    ++   + + +      ++D++ + G +
Sbjct: 244 YLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKCGDL 302

Query: 479 REALDLIKSM 488
             AL + + M
Sbjct: 303 DGALRVFEKM 312


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/607 (33%), Positives = 322/607 (53%), Gaps = 48/607 (7%)

Query: 41  KQFHAFIIKTGSPQH-----QTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           K  H F +K G  ++         LY+  + +     + +L + +  V  +N +  C  N
Sbjct: 262 KAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDL-MPHRNVITWNSLASCYVN 320

Query: 96  AN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
              P + + ++REM + G+ P+   +  +L AC Q + L+ G+ +H +++K  ++ +V+V
Sbjct: 321 CGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFV 380

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
              L+ LYA C  ++    +F    H    R++V+W +L   YV   +P + +  F +M 
Sbjct: 381 CTALVNLYANCLCVREAQTVFDLMPH----RNVVTWNSLSSCYVNCGFPQKGLNVFREMV 436

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              ++PD + ++ +L ACS L DL  G  IH +   +   +  DVF+ NAL+ +Y KC  
Sbjct: 437 LNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRH--GMVEDVFVCNALLSLYAKCVC 494

Query: 275 IPSARKVFDEMPVKNVVSWNSM-----------------------------------IAG 299
           +  A+ VFD +P + V SWN +                                   I G
Sbjct: 495 VREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGG 554

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
                + +EA++IFR+MQ +G KPD+ T+  +L +C+    L +GK +H Y+ ++  + D
Sbjct: 555 CVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWD 614

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
               NALVDMYAKCG +  +  VF  M  +DV+S+  MI    +HG   +AL +F +M  
Sbjct: 615 LARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLL 674

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             ++PD  TF  VLSACSH+ LVEEG + F  MSR + ++P+ EHY C+VD++ RAG + 
Sbjct: 675 SMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLE 734

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA   I+ MP+ P A  W A L  C+++  VELA+I  + L   +P G   Y+ + NI  
Sbjct: 735 EAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILV 794

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
           +   W EA K+RK MKER + KTPGCS   V    + F  GDKS+ ++ +IY  LDE+  
Sbjct: 795 TAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFA 854

Query: 600 QSKNHGY 606
           + K  GY
Sbjct: 855 KIKAAGY 861



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 200/392 (51%), Gaps = 7/392 (1%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P EAI +Y     +G+ P+      V KAC  S+     +Q H  + +  ++S+V + N 
Sbjct: 21  PNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNA 80

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
            +  Y  C  ++   ++F         RD+V+W +L   YV   +P + +  F  M    
Sbjct: 81  FIHAYGKCKCVEGARRVFD----DLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNK 136

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++ + + +  +L  CS L DL  G +IH ++  +   +  DVF+ +A ++ Y KC  +  
Sbjct: 137 VKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRH--GMVEDVFVSSAFVNFYAKCLCVRE 194

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A+ VFD MP ++VV+WNS+ +   + G  ++ L++FR M   G+KPD  T+ C+L++C++
Sbjct: 195 AQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSD 254

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +  L+ GK +H +  K+ +  + F+ NALV++Y  C  + +A  VF  M  R+V ++ ++
Sbjct: 255 LQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSL 314

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
                  G   K L++F EM   G++PD +    +L ACS    ++ G K     +  + 
Sbjct: 315 ASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSG-KTIHGFAVKHG 373

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
           +         +V+L+     +REA  +   MP
Sbjct: 374 MVEDVFVCTALVNLYANCLCVREAQTVFDLMP 405


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/515 (36%), Positives = 302/515 (58%), Gaps = 28/515 (5%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           +SN      + +Y++M+  G+  +  T+  VL  C  S +L +G+ VH+ ++K++    +
Sbjct: 227 VSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRI 286

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
              NTL+ +Y+ CG +    ++F        +R++VSWT++I  Y +      AI     
Sbjct: 287 NFSNTLLDMYSKCGDLDGALRVFE----KMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQ 342

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +  ++ D + +  +L AC++ G L  G  +H YI  N  N+  ++F+ NAL+DMY KC
Sbjct: 343 MEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN--NMESNLFVCNALMDMYAKC 400

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G++ +A  VF  M VK+++SWN+MI  L                     KPD  T+ CVL
Sbjct: 401 GSMEAANSVFSTMVVKDIISWNTMIGEL---------------------KPDSRTMACVL 439

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +CA++  LE GK +H Y+ +N  ++D  + NALVD+Y KCG +  A  +F  +  +D+ 
Sbjct: 440 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 499

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+T MI G  +HG   +A+  F+EM   GIEPDEV+F+ +L ACSH+GL+E+G + F  M
Sbjct: 500 SWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIM 559

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              +N++P+ EHY CMVDL  R G + +A + I+++P+ PDA +WGALL  C+ +  +EL
Sbjct: 560 KNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIEL 619

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           AE V E +   EPE  G Y+L+ NIY+   +W+E  +LR+K+ ++ ++K PGCS +E+ G
Sbjct: 620 AEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKG 679

Query: 573 EFYEFRKGDK-SHPKTLEIYKLLDEIMHQSKNHGY 606
           +   F  G+  SHP +  I  LL ++  + K  G+
Sbjct: 680 KVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGH 714



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 188/415 (45%), Gaps = 65/415 (15%)

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           N +E I + ++  ++     T T   VL+ C   +S   G++VH+     ++  +  +  
Sbjct: 84  NAMELICMCKKSELE-----TKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGL 138

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+  YA CG +K   ++F   +    ++++  W  ++  Y                   
Sbjct: 139 KLVSFYATCGDLKEGRRVFDTME----KKNVYLWNFMVSEY------------------- 175

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
                           +K+GD    I + + + +                      G  P
Sbjct: 176 ----------------AKIGDFKESICLFKIMVEKGIE------------------GKRP 201

Query: 277 -SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
            SA ++FD++  ++V+SWNSMI+G    G  +  L I+++M  LG+  D  T++ VL  C
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           AN G L LGK VH+   K+         N L+DMY+KCG +D A  VF  M  R+V S+T
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI G    G++  A+ +  +M + G++ D V    +L AC+ +G ++ G K   D  + 
Sbjct: 322 SMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNG-KDVHDYIKA 380

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            N++        ++D++ + G + EA + + S  +V D   W  ++G  K  ++ 
Sbjct: 381 NNMESNLFVCNALMDMYAKCGSM-EAANSVFSTMVVKDIISWNTMIGELKPDSRT 434


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/536 (38%), Positives = 308/536 (57%), Gaps = 42/536 (7%)

Query: 91  QCLSNANPLEAIALYREML--IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           Q  S+A   +A+ALY +M     G+ P T+T+  VLKA  + + LR G+QVH +  K   
Sbjct: 76  QSGSSAAARDAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGF 135

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD------- 201
            ++  +  TL+ LYA CG +    ++F       AQ     + T+I AY++         
Sbjct: 136 QTDERIATTLVDLYARCGRLDDARRVFDRLLVKDAQL----YNTMIAAYMEAGEVELAEE 191

Query: 202 ----YPTEAILSFFDMC-----------------QANLRPDGMILVIVLSACSKLGDLSL 240
                P     +  +M                   AN   + ++   ++S  +K G    
Sbjct: 192 LFEVMPERNTHTLMEMVGGYSARGDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGS--- 248

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALID-MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            +   R + D       DV   N +I  MY KCG +  ARKVFD MP +NVV W SMI+G
Sbjct: 249 -VDDARSVFDGMRQ--RDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISG 305

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
            T  G+FK+A+ +FR MQ  G+K DD T+  V++SC  +G L+LG++VH Y D + +   
Sbjct: 306 YTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKG 365

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             + N+L+DMY+KCG I +A  +FR +  RD +S+T MI+G A++G + +ALD+F++M +
Sbjct: 366 ISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEE 425

Query: 420 VG-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
            G + P+E+TF+GVL++CSH GLVE+G  HF  MS+VY + P+ EHYGCMVDL GRA L+
Sbjct: 426 EGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLL 485

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            EA   I+ MP+ PD  +W +LL AC+   +V LAE V E +   EP   G  +L++N+Y
Sbjct: 486 AEAEQFIEEMPIAPDVAIWRSLLFACRARGEVGLAEYVAERVEELEPSRCGGNVLLSNVY 545

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           ++ +RW +  K+R  M   +V K PGCS++EV G  +EF  GD++H +T  IY +L
Sbjct: 546 ATTSRWVDVNKVRTGMGRSRVSKRPGCSVIEVNGCAHEFLSGDETHLETEAIYNIL 601



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 189/433 (43%), Gaps = 66/433 (15%)

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ-----AQRD 186
           S R  +Q+HA ++      + +V   L+R +A  G ++A   +   R H Q     A RD
Sbjct: 26  SARQLEQLHARAVLLGHARSSFVAAKLVRAFADLGHLRAARAVAAVRAHSQSGSSAAARD 85

Query: 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
            V+       Y +M      +           RP    +  VL A ++   L  G ++H 
Sbjct: 86  AVAL------YAQMHRGCPGV-----------RPLTFTVSSVLKAAARREMLREGEQVHV 128

Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
           ++  N F    D  I   L+D+Y +CG +  AR+VFD + VK+   +N+MIA     G+ 
Sbjct: 129 HVFKNGFQ--TDERIATTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEV 186

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT-------- 358
           + A ++F  M     + +  TL+ ++   +  G ++  K  H +   N +          
Sbjct: 187 ELAEELFEVMP----ERNTHTLMEMVGGYSARGDMDSAK--HVFEMANGVVNMVLCTAMI 240

Query: 359 DGFIGNALVD-----------------------MYAKCGRIDQAFGVFRSMKCRDVYSYT 395
            GF     VD                       MYAKCG ++ A  VF +M  R+V  +T
Sbjct: 241 SGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWT 300

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI G    GK  +A+ +F +M   G++ D+ T   V+S+C   G ++ G ++      V
Sbjct: 301 SMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLG-RYVHAYCDV 359

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + L         ++D++ + G I++A ++ + + +  D F W  ++    ++    L+  
Sbjct: 360 HGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGL-VKRDDFSWTVMIMGFAVNG---LSGE 415

Query: 516 VMENLVRFEPEGD 528
            ++   + E EG+
Sbjct: 416 ALDLFAQMEEEGE 428


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/558 (37%), Positives = 316/558 (56%), Gaps = 47/558 (8%)

Query: 94  SNANPLEAIALYREMLIKGLL-PNTYTLPYVLKACWQ-SQSLRVGQQVHAYSMKTALLSN 151
           S+AN   A+AL+ +M  + L+ P+  +L  +L AC   + SLR G+QVH +S+++ L+ +
Sbjct: 342 SDAN--TALALFHKMTTRHLMSPDVISLVNILPACASLAASLR-GRQVHGFSIRSGLVDD 398

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFH---FRQ----------HPQAQR------------- 185
           V+V N ++ +YA CG ++  +K+F    F+           + QA R             
Sbjct: 399 VFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTE 458

Query: 186 -----DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
                D+V+WT +I  Y +     EA+  F  MC    RP+ + LV +LSAC  +G L  
Sbjct: 459 ENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLH 518

Query: 241 GIKIHRYITDNHFNL------SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN--VVS 292
           G + H Y      NL      + D+ + N LIDMY KC +   ARK+FD +  K+  VV+
Sbjct: 519 GKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVT 578

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGL--GLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           W  MI G    G    AL +F  M  +   +KP+DFTL C L +CA +  L  G+ VH Y
Sbjct: 579 WTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAY 638

Query: 351 LDKNHINTDG-FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           + +N   +   F+ N L+DMY+K G +D A  VF +M  R+  S+T+++ G  +HG+   
Sbjct: 639 VLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGED 698

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           AL +F EM +V + PD +TF+ VL ACSH+G+V+ G   F  MS+ + + P  EHY CMV
Sbjct: 699 ALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMV 758

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL+GRAG + EA+ LI  MP+ P   VW ALL AC++H+ VEL E     L+  E   DG
Sbjct: 759 DLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDG 818

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
           +Y L++NIY++  RWK+  ++R  MK   +KK PGCS ++       F  GD+SHP++ +
Sbjct: 819 SYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQ 878

Query: 590 IYKLLDEIMHQSKNHGYI 607
           IY+ L +++ + K  GY+
Sbjct: 879 IYETLADLIQRIKAIGYV 896



 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 163/511 (31%), Positives = 249/511 (48%), Gaps = 53/511 (10%)

Query: 73  IENLSLQNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
           +E L      V+ +N +I+  L   +P +   LYR+M   G  P+ YT P+V KAC    
Sbjct: 214 LERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLS 273

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
           SL +G  +HA   ++   SNV+V N ++ +Y  CG ++  H +F    H   Q DLVSW 
Sbjct: 274 SLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQ-DLVSWN 332

Query: 192 TLIQAYVKMDYPTEAILSFFDMCQANL-RPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
           +++ AY+       A+  F  M   +L  PD + LV +L AC+ L     G ++H +   
Sbjct: 333 SVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIR 392

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM-------------- 296
           +   L  DVF+ NA++DMY KCG +  A KVF  M  K+VVSWN+M              
Sbjct: 393 S--GLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHAL 450

Query: 297 ---------------------IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
                                I G   RGQ  EALD+FR+M   G +P+  TLV +L++C
Sbjct: 451 SLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSAC 510

Query: 336 ANIGWLELGKWVHTYLDKNHINTDG--------FIGNALVDMYAKCGRIDQAFGVFRSM- 386
            ++G L  GK  H Y  K  +N DG         + N L+DMYAKC   + A  +F S+ 
Sbjct: 511 VSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVS 570

Query: 387 -KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV--GIEPDEVTFVGVLSACSHAGLVE 443
            K RDV ++T MI G A HG A  AL +FS M ++   I+P++ T    L AC+    + 
Sbjct: 571 PKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALR 630

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
            G +    + R +          C++D++ ++G +  A  +  +MP   +A  W +L+  
Sbjct: 631 FGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQ-RNAVSWTSLMTG 689

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
             +H + E A  V + + +     DG   L+
Sbjct: 690 YGMHGRGEDALRVFDEMRKVPLVPDGITFLV 720



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 135/297 (45%), Gaps = 9/297 (3%)

Query: 265 LIDMYLKCGNIPSARKVFDEMPVK--NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           LI  Y+   +   A  + + +P    +V  WN +I    H G  ++   ++R+M+ LG  
Sbjct: 197 LIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWT 256

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD +T   V  +CAN+  L LG  +H  + ++   ++ F+ NA+V MY KCG +  A  +
Sbjct: 257 PDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNM 316

Query: 383 FRSMKCR---DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI-EPDEVTFVGVLSACSH 438
           F  +  R   D+ S+ +++        A  AL +F +M+   +  PD ++ V +L AC+ 
Sbjct: 317 FDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACAS 376

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
                 G +     S    L         +VD++ + G + EA  + + M    D   W 
Sbjct: 377 LAASLRG-RQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKF-KDVVSWN 434

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRKKM 554
           A++       ++E A  + E +     E D   +  +   Y+ + +  EAL + ++M
Sbjct: 435 AMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQM 491


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/512 (37%), Positives = 307/512 (59%), Gaps = 10/512 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ L+ +M++ G +P+ +TL  V+ AC +   L +G+Q H   MK+ L  +V V  +L+
Sbjct: 128 DAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLV 187

Query: 160 RLYAVC---GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD-YPTEAILSFFDMCQ 215
            +YA C   G +    K+F          +++SWT +I  YV+      EAI  F +M Q
Sbjct: 188 DMYAKCVADGSVDDARKVFD----RMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             ++P+      VL AC+ L D+ LG +++  +      L+    + N+LI MY +CGN+
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVK--MRLASINCVGNSLISMYSRCGNM 301

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
            +ARK FD +  KN+VS+N+++         +EA ++F  ++G G   + FT   +L+  
Sbjct: 302 ENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGA 361

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           ++IG +  G+ +H+ + K+   ++  I NAL+ MY++CG I+ AF VF  M   +V S+T
Sbjct: 362 SSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWT 421

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI G A HG A +AL+ F +M + G+ P+EVT++ VLSACSH GL+ EG KHF  M   
Sbjct: 422 SMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVE 481

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + + P+ EHY C+VDL GR+G + EA++L+ SMP   DA V    LGAC++H  ++L + 
Sbjct: 482 HGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKH 541

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             E ++  +P    AYIL++N+++S  +W+E  ++RKKMKER + K  GCS +EV  + +
Sbjct: 542 AAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVH 601

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +F  GD SHP+  EIY  LD++  + K  GYI
Sbjct: 602 KFYVGDTSHPQAQEIYDELDQLALKIKELGYI 633



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 137/484 (28%), Positives = 245/484 (50%), Gaps = 28/484 (5%)

Query: 86  YNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           ++ +I C +N     EAI+ + +ML  G  PN Y    V +AC   +++ +G+ +  + +
Sbjct: 10  WSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLL 69

Query: 145 KTALL-SNVYVFNTLMRLYAVC-GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
           KT    S+V V   L+ ++    G +++ +K+F         R++V+WT +I  + ++ +
Sbjct: 70  KTGYFESDVCVGCALIDMFVKGNGDLESAYKVF----DRMPDRNVVTWTLMITRFQQLGF 125

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             +A+  F DM  +   PD   L  V+SAC+++G LSLG + H  +  +  +L  DV + 
Sbjct: 126 SRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDL--DVCVG 183

Query: 263 NALIDMYLKC---GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF-KEALDIFRRMQG 318
            +L+DMY KC   G++  ARKVFD MPV NV+SW ++I G    G   +EA+++F  M  
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
             +KP+ FT   VL +CAN+  + LG+ V+  + K  + +   +GN+L+ MY++CG ++ 
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMEN 303

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A   F  +  +++ SY  ++   A    + +A ++F+E+   G   +  TF  +LS  S 
Sbjct: 304 ARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASS 363

Query: 439 AGLVEEGCK-HFLDMSRVYNLQPQTEHYGC--MVDLFGRAGLIREALDLIKSMPLVPDAF 495
            G + +G + H    SR+     ++  + C  ++ ++ R G I  A  +   M    +  
Sbjct: 364 IGAIGKGEQIH----SRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVI 418

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEG----DGAYILMTNIYSSKNRWKEALKLR 551
            W +++      AK   A   +E   +    G    +  YI + +  S      E LK  
Sbjct: 419 SWTSMITG---FAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHF 475

Query: 552 KKMK 555
           K MK
Sbjct: 476 KSMK 479



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/260 (39%), Positives = 149/260 (57%), Gaps = 6/260 (2%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           +RDLVSW+ LI  Y   +   EAI +FFDM +    P+      V  ACS   ++SLG  
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKC-GNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           I  ++    +    DV +  ALIDM++K  G++ SA KVFD MP +NVV+W  MI     
Sbjct: 64  IFGFLLKTGY-FESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
            G  ++A+D+F  M   G  PD FTL  V+++CA +G L LG+  H  + K+ ++ D  +
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCV 182

Query: 363 GNALVDMYAKC---GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA-WKALDIFSEMS 418
           G +LVDMYAKC   G +D A  VF  M   +V S+TA+I G    G    +A+++F EM 
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV 242

Query: 419 QVGIEPDEVTFVGVLSACSH 438
           Q  ++P+  TF  VL AC++
Sbjct: 243 QGQVKPNHFTFSSVLKACAN 262



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 110/204 (53%), Gaps = 6/204 (2%)

Query: 86  YNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           YN I+   + + N  EA  L+ E+   G   N +T   +L       ++  G+Q+H+  +
Sbjct: 319 YNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRIL 378

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K+   SN+++ N L+ +Y+ CG I+A  ++F    +     +++SWT++I  + K  + T
Sbjct: 379 KSGFKSNLHICNALISMYSRCGNIEAAFQVF----NEMGDGNVISWTSMITGFAKHGFAT 434

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A+ +F  M +A + P+ +  + VLSACS +G +S G+K  + +   H  + P +  +  
Sbjct: 435 RALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEH-GIVPRMEHYAC 493

Query: 265 LIDMYLKCGNIPSARKVFDEMPVK 288
           ++D+  + G++  A ++ + MP K
Sbjct: 494 VVDLLGRSGHLEEAMELVNSMPFK 517



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 115/221 (52%), Gaps = 11/221 (4%)

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           +++VSW+++I+   +  +  EA+  F  M   G  P+++    V  +C+N   + LGK +
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 348 HTYLDKN-HINTDGFIGNALVDMYAKC-GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
             +L K  +  +D  +G AL+DM+ K  G ++ A+ VF  M  R+V ++T MI      G
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEH 464
            +  A+D+F +M   G  PD  T  GV+SAC+  GL+  G + H L M    +L      
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCV-- 182

Query: 465 YGC-MVDLFGRA---GLIREALDLIKSMPLVPDAFVWGALL 501
            GC +VD++ +    G + +A  +   MP V +   W A++
Sbjct: 183 -GCSLVDMYAKCVADGSVDDARKVFDRMP-VHNVMSWTAII 221


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/553 (36%), Positives = 316/553 (57%), Gaps = 32/553 (5%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQ 79
           S  L++  +   L+Q HA II+ G   HQ   +  + ++L   N + N S        + 
Sbjct: 29  STLLKACTTTSTLEQVHARIIRKG--LHQDHFIISQFLTLC--NSLSNFSYTTSVFNGVS 84

Query: 80  NPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +P   L+N  I+  S N +    ++L+  M     +P+ +T P ++KAC +   ++ G  
Sbjct: 85  SPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVA 144

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
            H  +++  +  +V+V  +L+ LY  CG I    K+F        +R++VSWT +I  Y 
Sbjct: 145 FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFD----EMGERNVVSWTAMIAGYA 200

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP- 257
                 EA   F +M + N     +    ++S   K GDL    K+        F+  P 
Sbjct: 201 SFSDLVEARKLFDEMPEKN----AVSWNAIISGYVKCGDLRSARKM--------FDEMPH 248

Query: 258 -DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            +V     +ID Y K G++ SAR VF+E P ++VV+W+++I+G    GQ  EA+ IF  M
Sbjct: 249 RNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEM 308

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT-DGFIGNALVDMYAKCGR 375
               +KPD+F +V ++++C+ +G LEL KWV  Y+ K+ I+     +  AL+DM AKCG 
Sbjct: 309 CSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGS 368

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +D+A  +F  M  RD+ SY +M+ GL+IHG   +A+ +FS M   G+ PD+V F  +L+A
Sbjct: 369 MDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTA 428

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           CS AGLV+EGC +F  M   Y++ P  +HY CMVDL GRAG ++EA +L+KSMP+ P A 
Sbjct: 429 CSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAG 488

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
            WGALLGACK+H  +EL E+V + L   EP+  G Y+L++NIY++  +W +   LR KM+
Sbjct: 489 AWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMR 548

Query: 556 ERKVKKTPGCSLV 568
           ER ++K PGCS +
Sbjct: 549 ERGIRKIPGCSWI 561


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/508 (37%), Positives = 299/508 (58%), Gaps = 6/508 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E++ L+ +M I G  PN +T+   LK+C   ++  VG+ VH  ++K     +++V   L+
Sbjct: 220 ESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALL 279

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LYA  G I    +LF   + P+   DL+ W+ +I  Y + D   EA+  F  M Q ++ 
Sbjct: 280 ELYAKSGEIIDAQRLF--EEMPKT--DLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVV 335

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+      VL AC+    L LG +IH  +    F L+ +VF+ NA++D+Y KCG I ++ 
Sbjct: 336 PNNFTFASVLQACASSVSLDLGKQIHSCVLK--FGLNSNVFVSNAIMDVYAKCGEIENSM 393

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           K+F+E+P +N V+WN++I G    G  + A+++F  M    ++P + T   VL + A++ 
Sbjct: 394 KLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLA 453

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            LE G  +H+   K   N D  + N+L+DMYAKCGRI+ A   F  M  RD  S+ AMI 
Sbjct: 454 ALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMIC 513

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G ++HG + +AL++F  M     +P+++TFVGVLSACS+AGL+ +G  HF  MS+ Y+++
Sbjct: 514 GYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIK 573

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  EHY CMV L GR G   EA+ LI  +   P   VW ALLGAC IH KV+L  +  ++
Sbjct: 574 PCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQH 633

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           ++  EP  D  ++L++N+Y++  RW     +RK M+++KV+K PG S VE  G  + F  
Sbjct: 634 VLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSV 693

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GD SHP    I  +L+ +  ++++ GY+
Sbjct: 694 GDTSHPDIKLICAMLEWLNKKTRDAGYV 721



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 174/369 (47%), Gaps = 14/369 (3%)

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G+ +H + +K     +++  N L+  Y     ++   KLF   + PQ   + +S+ TL Q
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLF--DEMPQT--NTISFVTLAQ 109

Query: 196 AYVKMDYPTEA---ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
            Y +     +A   IL  F      + P     ++ L     L  L   +    Y   +H
Sbjct: 110 GYSRDHQFHQALHFILRIFKEGH-EVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHH 168

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
                D F+  ALID Y   GN+  AR VFD++  K++VSW  M+A       ++E+L +
Sbjct: 169 ----ADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQL 224

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F +M+ +G KP++FT+   L SC  +    +GK VH    K   + D F+G AL+++YAK
Sbjct: 225 FNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAK 284

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
            G I  A  +F  M   D+  ++ MI   A   ++ +ALD+F  M Q  + P+  TF  V
Sbjct: 285 SGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASV 344

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           L AC+ +  ++ G K        + L         ++D++ + G I  ++ L + +P   
Sbjct: 345 LQACASSVSLDLG-KQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRN 403

Query: 493 DAFVWGALL 501
           D   W  ++
Sbjct: 404 DV-TWNTII 411


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/648 (33%), Positives = 351/648 (54%), Gaps = 78/648 (12%)

Query: 33  SSKSVGQLKQFHAFIIKTG------SPQHQTQILYDKIISLSRGNEIENL--SLQNPQVY 84
           + +SV Q  Q HA +  +G      S +H    L + I +      + +L   L +   +
Sbjct: 8   TPRSVRQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHSTTF 67

Query: 85  LYNFIIQ-CL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR--VGQQVH 140
           L++  ++ CL ++A     + L R M   G+    +T  +V + C      R  +   +H
Sbjct: 68  LFDTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLH 127

Query: 141 AYSMKTALLSNV-YVFNTLMRLYAVCGLIKAVHKLFH----------------------- 176
           A  ++T L S    V N L+ +YA  GL     + F                        
Sbjct: 128 AACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLL 187

Query: 177 ------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
                   Q P+  R++VSWT+LI  Y +   P +A+  F  M    + PD + ++  LS
Sbjct: 188 DEARRLLVQAPE--RNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALS 245

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA------------ 278
           ACSKL +L LG  +H  +      ++ ++ +  ALIDMY KCG+I  A            
Sbjct: 246 ACSKLKNLDLGRLLHLLVGQKRIRMTDNLVV--ALIDMYAKCGDIAQAQAVFDAVGRGQK 303

Query: 279 --------------------RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
                               R +FD+M  ++V+++NSMI G  H G+ ++AL +F +M+ 
Sbjct: 304 PEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRR 363

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G++ D+FT+V +L +CA++G L  G+ +H  +++  +  D ++G AL+DMY KCGR+D+
Sbjct: 364 HGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDE 423

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  VF  M  RDV+++TAMI GLA +G    AL+ F +M + G +P  VT++ VL+ACSH
Sbjct: 424 ATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSH 483

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           + L++EG  HF +M  ++ L PQ EHYGCM+DL  R+GL+ EA+ L+++MP+ P+A +WG
Sbjct: 484 SSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWG 543

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           ++L AC++H  ++LA    E+L++  PE D  Y+ + NIY    +W +A ++R  M+ER 
Sbjct: 544 SILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERG 603

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           VKKT G S + V G+ ++F   D+SHP TLEI  +++EI  + K+ GY
Sbjct: 604 VKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGY 651


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/562 (36%), Positives = 312/562 (55%), Gaps = 43/562 (7%)

Query: 79  QNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           + P  Y+   +++  L    P  A+ L+R +L   L  +  T+ + +KA   S S    +
Sbjct: 93  EGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPT--E 150

Query: 138 QVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            +H  + K   +  +V   N L+ +Y    L+    KLF       A RD+VSWTTLI  
Sbjct: 151 AIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFD----EMADRDVVSWTTLIDG 206

Query: 197 YVKMDYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           Y +   P EA   F  M  A ++ P+ + LV   SA  ++G L LG  +H+ I ++   +
Sbjct: 207 YARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRM 266

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK--------------------------- 288
           S  V + NAL+DM+ KCG + +A++VFD MP+K                           
Sbjct: 267 S--VNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKE 324

Query: 289 ----NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
               NVVSW+ M+A  +H     EA+ IF  M   G++P D TLV VL++CA +  L++G
Sbjct: 325 IPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVG 384

Query: 345 KWVH-TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
            W++ TY+  + +     + NA +DM+AKCG +  A  +F +M+ ++V S+  MI+   +
Sbjct: 385 TWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGL 444

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           HG+  +AL +F E    GI PDE T++GVLSACSH GLV EG  HF +M  VY ++P+ E
Sbjct: 445 HGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAE 504

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           HY CM+DL G+ GL++EA ++ +SMP+  D   WGALL AC++H  VE+ +   + L   
Sbjct: 505 HYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGL 564

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           +P   G Y+LM+ IY+SK++W +   LR  M++R+VKK PGCS +EV G+ +EF   D S
Sbjct: 565 DPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHEFLVADVS 624

Query: 584 HPKTLEIYKLLDEIMHQSKNHG 605
           H  + +IY  L  I   SK  G
Sbjct: 625 HVHSEDIYAALGNIYLHSKAEG 646


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/513 (36%), Positives = 290/513 (56%), Gaps = 6/513 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N     A+ +  +M   G  P++ TL  VL A    ++LR+G+ +H Y+ +      V V
Sbjct: 221 NGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNV 280

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
              ++  Y  CG +++   +F       + R++VSW T+I  Y +     EA  +F  M 
Sbjct: 281 ATAMLDTYFKCGSVRSARLVFK----GMSSRNVVSWNTMIDGYAQNGESEEAFATFLKML 336

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              + P  + ++  L AC+ LGDL  G  +HR + +       DV + N+LI MY KC  
Sbjct: 337 DEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGF--DVSVMNSLISMYSKCKR 394

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A  VF  +  K VV+WN+MI G    G   EAL++F  MQ   +KPD FTLV V+ +
Sbjct: 395 VDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITA 454

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
            A++      KW+H    +  ++ + F+  AL+D +AKCG I  A  +F  M+ R V ++
Sbjct: 455 LADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITW 514

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            AMI G   +G   +ALD+F+EM    ++P+E+TF+ V++ACSH+GLVEEG  +F  M  
Sbjct: 515 NAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKE 574

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y L+P  +HYG MVDL GRAG + +A   I+ MP+ P   V GA+LGAC+IH  VEL E
Sbjct: 575 NYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGE 634

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
              + L   +P+  G ++L+ N+Y+S + W +  ++R  M+++ ++KTPGCSLVE+  E 
Sbjct: 635 KTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEV 694

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + F  G  +HP++  IY  L+ +  + K  GY+
Sbjct: 695 HTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYV 727



 Score =  245 bits (625), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 169/568 (29%), Positives = 277/568 (48%), Gaps = 54/568 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENLS-----LQNPQVY 84
           LE   S+ +L Q    IIK G   +   +   K+ISL  + N I   +     +++    
Sbjct: 51  LELCTSLKELHQILPLIIKNGF--YNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDV 108

Query: 85  LYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           LY+ +++  + N+   +A+  Y  M    ++P  Y   Y+L+   ++  LR G+++H   
Sbjct: 109 LYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMV 168

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +     SN++    ++ LYA C  I+  +K+F        QRDLVSW T++  Y +  + 
Sbjct: 169 ITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMF----ERMPQRDLVSWNTVVAGYAQNGFA 224

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
             A+     M +A  +PD + LV VL A + L  L +G  IH Y     F     V +  
Sbjct: 225 RRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYM--VNVAT 282

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           A++D Y KCG++ SAR VF  M  +NVVSWN+MI G    G+ +EA   F +M   G++P
Sbjct: 283 AMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEP 342

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
            + +++  L++CAN+G LE G++VH  LD+  I  D  + N+L+ MY+KC R+D A  VF
Sbjct: 343 TNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVF 402

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
            ++K + V ++ AMI+G A +G   +AL++F EM    I+PD  T V V++A +   +  
Sbjct: 403 GNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTR 462

Query: 444 EG------------------CKHFLDM----------SRVYNLQPQTEH---YGCMVDLF 472
           +                   C   +D            ++++L  Q  H   +  M+D +
Sbjct: 463 QAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLM-QERHVITWNAMIDGY 521

Query: 473 GRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVR---FEPE 526
           G  G  REALDL   M    + P+   + +++ AC     VE      E++      EP 
Sbjct: 522 GTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPT 581

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKM 554
            D  Y  M ++     R  +A K  + M
Sbjct: 582 MD-HYGAMVDLLGRAGRLDDAWKFIQDM 608



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 108/213 (50%), Gaps = 6/213 (2%)

Query: 77  SLQNPQVYLYN-FIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           +L++  V  +N  I+    N    EA+ L+ EM    + P+++TL  V+ A       R 
Sbjct: 404 NLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQ 463

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            + +H  +++T +  NV+V   L+  +A CG I+   KLF   Q    +R +++W  +I 
Sbjct: 464 AKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQ----ERHVITWNAMID 519

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            Y    +  EA+  F +M   +++P+ +  + V++ACS  G +  G+     + +N + L
Sbjct: 520 GYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKEN-YGL 578

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
            P +  + A++D+  + G +  A K   +MPVK
Sbjct: 579 EPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVK 611


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/522 (37%), Positives = 305/522 (58%), Gaps = 39/522 (7%)

Query: 81   PQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
            P +  +N +I+  S  N P+EAI  Y  M  + L  N  T P++LKAC +  ++     V
Sbjct: 759  PTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACARISNVSC-TTV 817

Query: 140  HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
            HA  +K    S+++V N L+  YA    +    K+F       ++RDLVSW +LI  Y +
Sbjct: 818  HARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFD----EMSERDLVSWNSLICGYGR 873

Query: 200  MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
                +E ++ F +M  A+++ D + +V V+ AC+ LG+  +   +  YI +N   +  DV
Sbjct: 874  CRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEV--DV 931

Query: 260  FIHNALIDMYL-------------------------------KCGNIPSARKVFDEMPVK 288
            ++ N LIDMY                                K GN+ +ARK+FD+MP +
Sbjct: 932  YLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHR 991

Query: 289  NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
            +V+SW SMI+  +  GQF +A+ +F+ M    +KPD+ T+  VL++CA+IG L++G+ VH
Sbjct: 992  DVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVH 1051

Query: 349  TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
             Y+ K  +N D ++GNAL+DMY KCG +++   VF  M  RD  S+T++I GLA++G A 
Sbjct: 1052 EYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSAD 1111

Query: 409  KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCM 468
             AL++FS M + G+ P   TFVGVL AC+HAG+V++G ++F  M RVY L P+ +HYGC+
Sbjct: 1112 SALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCV 1171

Query: 469  VDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
            VDL  R+G +  A + IK MP+ PD  VW  LL A ++H  + LAEI  + L+  +P   
Sbjct: 1172 VDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNS 1231

Query: 529  GAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
            G YIL +N Y+  NRW++ +K+R+ M+E  V K    S VE+
Sbjct: 1232 GNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEI 1273



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 197/395 (49%), Gaps = 44/395 (11%)

Query: 152  VYVFNTLMRLYAV--CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
            + +FN L++ YA+    ++KA ++LF  RQ P+    L  W  +I+ + + + P EAI +
Sbjct: 730  ISIFN-LLKSYALSPTNILKA-NELF--RQIPRPT--LSHWNIMIRGWSQTNQPIEAIRN 783

Query: 210  FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
            +  M    L  + +    +L AC+++ ++S    +H  +    F+   D+F+ NALI  Y
Sbjct: 784  YNLMYSQALFGNNLTYPFLLKACARISNVSC-TTVHARVLKLGFD--SDLFVSNALIHGY 840

Query: 270  LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
                 +  ARKVFDEM  +++VSWNS+I G     ++ E L +F  M+   +K D  T+V
Sbjct: 841  AGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMV 900

Query: 330  CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
             V+ +C  +G   +   +  Y+++N +  D ++GN L+DMY +   +D A  VF  M+ R
Sbjct: 901  KVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDR 960

Query: 390  DVYSYTAMIVGLAIHGK-----------------AW--------------KALDIFSEMS 418
            ++ S+ AMI+G    G                  +W              KA+ +F EM 
Sbjct: 961  NMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMM 1020

Query: 419  QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
               ++PDE+T   VLSAC+H G ++ G +   +  R Y++         ++D++ + G +
Sbjct: 1021 VTKVKPDEITVASVLSACAHIGALDVG-EAVHEYIRKYDVNADIYVGNALIDMYCKCGAV 1079

Query: 479  REALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
             + L + + M    D+  W +++    ++   + A
Sbjct: 1080 EKGLSVFEEMG-KRDSVSWTSVIAGLAVNGSADSA 1113


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/450 (42%), Positives = 279/450 (62%), Gaps = 14/450 (3%)

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY----PTEAILSFF-DMCQANLRPD 221
           LI + H   HF  HP  +  L  W TLI+A+V+       PT + +S F  M    ++PD
Sbjct: 7   LISSTHPTLHF-SHPTLESFL--WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPD 63

Query: 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
                 +L + +    L LG  +H  I    F L+ D F+  +LI MY   G +  AR +
Sbjct: 64  FHTFPFLLQSFASPSLLHLGRSVHAQIL--RFGLAIDPFVQTSLISMYSSSGLVDMARNL 121

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL---KPDDFTLVCVLNSCANI 338
           F  MP +NV+SW+ MI G    GQ+KEAL +FR MQ LG+   +P++FT+  VL +C  +
Sbjct: 122 FAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRL 181

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM-KCRDVYSYTAM 397
           G LE GKW H Y+DK  +  D  +G AL+DMYAKCG +++A  VF ++   +DV +++AM
Sbjct: 182 GALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAM 241

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I GLA+HG A + + +FS+M   G+ P+ VTF+ V  AC H GLV EG  +   M+  Y+
Sbjct: 242 ISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYS 301

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           + P  +HYGCMVDL+GRAG I+EA +++KSMP+ PD  VWGALL   ++H  +E  E+ +
Sbjct: 302 IIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELAL 361

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           + L+  EP   GAY+L++N+Y+ + RW++   +R  M+   +KK PGCSL+EV G  +EF
Sbjct: 362 KKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEF 421

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             GD SHP+T +I+ +L+EI+ + K  GY+
Sbjct: 422 FVGDDSHPETRQIHMMLEEILERLKVEGYV 451



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 180/340 (52%), Gaps = 26/340 (7%)

Query: 82  QVYLYNFIIQC--LSNANPL----EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           + +L+N +I+    + A P       I+++  M   G+ P+ +T P++L++      L +
Sbjct: 23  ESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHL 82

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G+ VHA  ++  L  + +V  +L+ +Y+  GL+     LF        +R+++SW+ +I 
Sbjct: 83  GRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAV----MPERNVISWSCMIN 138

Query: 196 AYVKMDYPTEAILSFFDMCQ---ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
            YV+     EA+  F +M      ++RP+   +  VL+AC +LG L  G   H YI  + 
Sbjct: 139 GYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYI--DK 196

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM-PVKNVVSWNSMIAGLTHRGQFKEALD 311
             +  DV +  ALIDMY KCG++  A  VF  + P K+V++W++MI+GL   G  +E + 
Sbjct: 197 CGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVG 256

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL-----DKNHINTDGFIGNAL 366
           +F +M   G++P+  T + V  +C + G +  GK    YL     D + I T    G  +
Sbjct: 257 LFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGK---DYLRRMTEDYSIIPTIQHYG-CM 312

Query: 367 VDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
           VD+Y + GRI +A+ V +SM    DV  + A++ G  +HG
Sbjct: 313 VDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 352



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 151/322 (46%), Gaps = 30/322 (9%)

Query: 3   SPLTVASGSRYNDINT-FQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQ 58
           SP+++    R++ +   F     L QS    S   +G  +  HA I++ G    P  QT 
Sbjct: 47  SPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLG--RSVHAQILRFGLAIDPFVQTS 104

Query: 59  ILY----DKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA-----NPLEAIALYREML 109
           ++       ++ ++R     NL    P+  + ++   C+ N         EA+AL+REM 
Sbjct: 105 LISMYSSSGLVDMAR-----NLFAVMPERNVISW--SCMINGYVRCGQYKEALALFREMQ 157

Query: 110 IKGL---LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
           + G+    PN +T+  VL AC +  +L  G+  HAY  K  +  +V +   L+ +YA CG
Sbjct: 158 MLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCG 217

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
            ++    +F    +    +D+++W+ +I          E +  F  M    +RP+ +  +
Sbjct: 218 SVEKATWVF---SNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFL 274

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
            V  AC   G +S G    R +T++ +++ P +  +  ++D+Y + G I  A  V   MP
Sbjct: 275 AVFCACVHGGLVSEGKDYLRRMTED-YSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMP 333

Query: 287 VK-NVVSWNSMIAGLTHRGQFK 307
           ++ +V+ W ++++G    G  +
Sbjct: 334 MEPDVLVWGALLSGSRMHGDIE 355


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/631 (33%), Positives = 337/631 (53%), Gaps = 52/631 (8%)

Query: 5   LTVASGSRYNDINTFQQLSLLHQS-PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDK 63
           L+ AS S+  + +    L+L H +   LE   +    KQ  A I++         +   +
Sbjct: 11  LSSASASQRVEWDPTVSLALKHATLILLEKCSTRDHFKQILAQIMRINLIGQTFPM--SR 68

Query: 64  IISLSRGNEIENLSLQ---------NPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLL 114
           +I  S     ENL +          +P +Y+YN +I  LS  +  ++ A Y  +L   + 
Sbjct: 69  LILFSAITHPENLDMAVLLFRHHTPHPNLYIYNTMISALS-LSLNQSFAFYNSLLSSCIY 127

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           PN  T  ++L+A   S+ L    Q+H +++ T      Y+ NTLM++Y     +   +++
Sbjct: 128 PNRSTFLFLLQA---SKFLSQVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQV 184

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F     P    D VS+  +I  Y K  +  EA+    +M    L+PD   ++ +L  C +
Sbjct: 185 FQQMAAP----DAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGR 240

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC---------------------- 272
           LGD  LG  +H +I       S ++ ++NAL+DMY+KC                      
Sbjct: 241 LGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWN 300

Query: 273 ---------GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
                    GN+  A   F++MP +++VSWNS+IAG   +G       +F  M    + P
Sbjct: 301 TMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWP 360

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  T++ ++++ A IG L  G+W+H ++ +  +  D F+G+A +DMY KCG I +A  VF
Sbjct: 361 DFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVF 420

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
           R +  +DV  +T MI G A HG   KAL +F EM +  + P++VTFV VL+ACSH+G V 
Sbjct: 421 REVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEY-VMPNQVTFVAVLTACSHSGFVS 479

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           +G + F  M   Y ++P  EHYGC+VDL GR+G   E  D+I+ MP+ P   +WGA+L A
Sbjct: 480 QGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSA 539

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C+ +  +E+AEI  + L++ EPE +G Y+L++NIY++  RWK + K+R+ M+ R VKKT 
Sbjct: 540 CRAYGNIEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTA 599

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           GCS V V G  +EF   DK HP+ +EI  +L
Sbjct: 600 GCSSVVVDGIIHEFVAADKRHPRWIEIQSIL 630


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/593 (36%), Positives = 337/593 (56%), Gaps = 19/593 (3%)

Query: 24  LLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL---SRGNEIENLSLQN 80
           L+  + +  SSK+   L+Q HA ++   S       L  K I L   +  + + +    +
Sbjct: 21  LVFLAKQCSSSKT---LQQVHAQMVVKSSIHSPNNHLLSKAIHLKNFTYASLLFSHIAPH 77

Query: 81  PQVYLYNFIIQCLSNA---NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           P  Y +N +I+ L+      PL A+ L+  M+   L PN +T P+   +C     L   +
Sbjct: 78  PNDYAFNIMIRALTTTWHHYPL-ALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPAR 136

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
             H+   K AL S+ +  ++L+ +Y+ CG +    K+F   + P+  RDLVSW ++I  Y
Sbjct: 137 AAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFD--EIPR--RDLVSWNSMIAGY 192

Query: 198 VKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            K     EA+  F +M + +   PD M LV VL AC +LGDL LG  +  ++ +    L+
Sbjct: 193 AKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLN 252

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
              +I +ALI MY KCG++ SAR++FD M  ++V++WN++I+G    G   EA+ +F  M
Sbjct: 253 S--YIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAM 310

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +   +  +  TL  VL++CA IG L+LGK +  Y  +     D F+  AL+DMYAKCG +
Sbjct: 311 KEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSL 370

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG--IEPDEVTFVGVLS 434
             A  VF+ M  ++  S+ AMI  LA HGKA +AL +F  MS  G    P+++TFVG+LS
Sbjct: 371 ASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLS 430

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           AC HAGLV EG + F  MS ++ L P+ EHY CMVDL  RAG + EA DLI+ MP  PD 
Sbjct: 431 ACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDK 490

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
              GALLGAC+    V++ E V+  ++  +P   G YI+ + IY++ N W+++ ++R  M
Sbjct: 491 VTLGALLGACRSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLM 550

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +++ + KTPGCS +EV    +EF  GD     ++++  ++D +  + K  GY+
Sbjct: 551 RQKGITKTPGCSWIEVENHLHEFHAGDGLCLDSIDLSNIIDLLYEELKREGYV 603


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/545 (36%), Positives = 302/545 (55%), Gaps = 42/545 (7%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+    +M  +  + N Y+    L AC     L +G Q+H    K+    +VY+ + L+
Sbjct: 134 EALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALV 193

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ C ++ +  + F         R++VSW +LI  Y +     +A+  F  M    + 
Sbjct: 194 DMYSKCRVVASAQRAFD----DMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIE 249

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + L  V SAC+ L  +  G++IH  +   H     D+ + NAL+DMY KC  +  AR
Sbjct: 250 PDEITLASVASACASLSAIREGLQIHARVM-KHDKYRNDLVLGNALVDMYAKCRRVNEAR 308

Query: 280 KVFDEMPVK-------------------------------NVVSWNSMIAGLTHRGQFKE 308
            VFD MP++                               NVVSWN++IAG T  G+ +E
Sbjct: 309 LVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEE 368

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI------NTDGFI 362
           A+ +F  ++   + P  +T   +LN+CAN+  L+LG+  HT++ K+        ++D F+
Sbjct: 369 AVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFV 428

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           GN+L+DMY KCG ++    VF  M  RD  S+ AMIVG A +G   +AL+IF EM   G 
Sbjct: 429 GNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGE 488

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
            PD VT +GVLSACSHAGLVEEG  +F  M+  + L P  +HY CMVDL GRAG + EA 
Sbjct: 489 RPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEAN 548

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
           +LI++MP+ PDA VWG+LL ACK+H  + L + V E L+  +P   G Y+L++N+Y+   
Sbjct: 549 NLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELG 608

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           RWK+ +++RK+M++  V K PGCS + +    + F   DK HP   +IY +L  +  Q K
Sbjct: 609 RWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMK 668

Query: 603 NHGYI 607
             GY+
Sbjct: 669 RVGYV 673



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 187/360 (51%), Gaps = 34/360 (9%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L  C +S+S+   + VHA  +KT   S +++ N L+ +Y  CG ++   K+F   Q   
Sbjct: 25  LLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRN 84

Query: 183 A---------------------------QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
                                       +RD  SW  ++  + + D   EA+    DM  
Sbjct: 85  TFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHS 144

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
            +   +       LSAC+ L DLS+G++IH  I  + ++L  DV++ +AL+DMY KC  +
Sbjct: 145 EDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSL--DVYMGSALVDMYSKCRVV 202

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
            SA++ FD+M V+N+VSWNS+I      G   +AL++F RM   G++PD+ TL  V ++C
Sbjct: 203 ASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASAC 262

Query: 336 ANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           A++  +  G  +H  + K +    D  +GNALVDMYAKC R+++A  VF  M  RDV S 
Sbjct: 263 ASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSE 322

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           T+M+ G A       A  +FS M    +E + V++  +++  +  G  EE  + FL + R
Sbjct: 323 TSMVSGYAKASSVKAARLMFSNM----MERNVVSWNALIAGYTQNGENEEAVRLFLLLKR 378



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 153/325 (47%), Gaps = 34/325 (10%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +L  C K   +     +H  I    F  S ++FI N L+D+Y KCG +  ARKVFD M  
Sbjct: 25  LLDTCVKSKSVFEARLVHARIIKTQF--SSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQ 82

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQG--------------------------LGL 321
           +N  SWN+++  LT  G   EAL++F+ M                            + +
Sbjct: 83  RNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDM 142

Query: 322 KPDDFTLV-----CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
             +DF L        L++CA +  L +G  +H  + K+  + D ++G+ALVDMY+KC  +
Sbjct: 143 HSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVV 202

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
             A   F  M  R++ S+ ++I     +G A KAL++F  M   GIEPDE+T   V SAC
Sbjct: 203 ASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASAC 262

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           +    + EG +    + +    +        +VD++ +   + EA  +   MPL  D   
Sbjct: 263 ASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL-RDVVS 321

Query: 497 WGALLGACKIHAKVELAEIVMENLV 521
             +++      + V+ A ++  N++
Sbjct: 322 ETSMVSGYAKASSVKAARLMFSNMM 346



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 123/259 (47%), Gaps = 18/259 (6%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL----- 149
           N    EA+ L+  +  + + P  YT   +L AC     L++G+Q H + +K         
Sbjct: 363 NGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGE 422

Query: 150 -SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            S+++V N+L+ +Y  CGL++    +F        +RD VSW  +I  Y +  Y TEA+ 
Sbjct: 423 DSDIFVGNSLIDMYMKCGLVEDGRLVFE----RMLERDNVSWNAMIVGYAQNGYGTEALE 478

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F +M  +  RPD + ++ VLSACS  G +  G    + +T  H  L P    +  ++D+
Sbjct: 479 IFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEH-GLVPVKDHYTCMVDL 537

Query: 269 YLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
             + G +  A  +   MP++ + V W S++A     G       +  R+  L + P +  
Sbjct: 538 LGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERL--LEIDPLNSG 595

Query: 328 LVCVLNSCANIGWLELGKW 346
              +L++     + ELG+W
Sbjct: 596 PYVLLSNM----YAELGRW 610


>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
 gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
 gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
 gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/477 (40%), Positives = 291/477 (61%), Gaps = 12/477 (2%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P   I  Y+  +  G  P+ +T P V KAC +   +R G+Q+H    K     ++YV N+
Sbjct: 87  PRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNS 146

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+  Y VCG  +   K+F         RD+VSWT +I  + +     EA+ +F  M   +
Sbjct: 147 LVHFYGVCGESRNACKVFG----EMPVRDVVSWTGIITGFTRTGLYKEALDTFSKM---D 199

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           + P+    V VL +  ++G LSLG  IH  I      +S +    NALIDMY+KC  +  
Sbjct: 200 VEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLET--GNALIDMYVKCEQLSD 257

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GLGLKPDDFTLVCVLNSCA 336
           A +VF E+  K+ VSWNSMI+GL H  + KEA+D+F  MQ   G+KPD   L  VL++CA
Sbjct: 258 AMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACA 317

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           ++G ++ G+WVH Y+    I  D  IG A+VDMYAKCG I+ A  +F  ++ ++V+++ A
Sbjct: 318 SLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNA 377

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM-SRV 455
           ++ GLAIHG   ++L  F EM ++G +P+ VTF+  L+AC H GLV+EG ++F  M SR 
Sbjct: 378 LLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSRE 437

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV-ELAE 514
           YNL P+ EHYGCM+DL  RAGL+ EAL+L+K+MP+ PD  + GA+L ACK    + EL +
Sbjct: 438 YNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRGTLMELPK 497

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
            ++++ +  E E  G Y+L++NI+++  RW +  ++R+ MK + + K PG S +E +
Sbjct: 498 EILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISKVPGSSYIEKF 554


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 192/472 (40%), Positives = 282/472 (59%), Gaps = 24/472 (5%)

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           +V   L+R+ +    I    K+F   Q+P    ++  +T LI   V   Y T+ I  ++ 
Sbjct: 65  FVVFELLRVCSNLNSIGYASKIFSHTQNP----NVYLYTALIDGLVLSCYYTDGIHLYYQ 120

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M  ++L PD   +  VL AC     L  G ++H  +      LS +  I   LI++Y KC
Sbjct: 121 MINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLK--LGLSSNRSIRIKLIELYGKC 178

Query: 273 GNIPSARKVFDEMP------------------VKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           G    AR+VFDEMP                  +K+ V W +MI GL   G+   AL++FR
Sbjct: 179 GAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFR 238

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            MQ   + P++ T+VCVL++C+ +G L+LG+WV +Y+DK+ I  + F+G AL++MY++CG
Sbjct: 239 NMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCG 298

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            ID+A  VF  MK ++V +Y +MI+G A+HGK+ +A+++F  + + G  P  VTFVGVL+
Sbjct: 299 DIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLN 358

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           ACSH GL E G + F  M++ Y ++PQ EHYGCMVDL GR G + EA   I+ M + PD 
Sbjct: 359 ACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDH 418

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            + GALL ACKIH  +ELAE V ++LV  +    G YIL++N YSS  +WKEA ++R  M
Sbjct: 419 VMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNM 478

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           +E  ++K PGCS +EV  E +EF  GD  HP+  +IYK L+E+    +  GY
Sbjct: 479 REEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGY 530



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/400 (31%), Positives = 206/400 (51%), Gaps = 31/400 (7%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQ-ILYDKIISLSRGNEIENLS-----LQNPQVY 84
           L++ K   Q+   +A II+  +  HQ   ++++ +   S  N I   S      QNP VY
Sbjct: 39  LQNCKHNNQIPPIYAKIIR--NHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVY 96

Query: 85  LYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           LY  +I  L  +    + I LY +M+   L+P++Y +  VLKAC    +L+ G++VH+  
Sbjct: 97  LYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQV 156

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ----------------RDL 187
           +K  L SN  +   L+ LY  CG  +   ++F   + P+                  +D 
Sbjct: 157 LKLGLSSNRSIRIKLIELYGKCGAFEDARRVFD--EMPERDVVASTVMINYYFDHGIKDT 214

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
           V WT +I   V+      A+  F +M + ++ P+ + +V VLSACS+LG L LG  +  Y
Sbjct: 215 VCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSY 274

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
           +  +   L+   F+  ALI+MY +CG+I  A++VF++M  KNV+++NSMI G    G+  
Sbjct: 275 MDKHRIELNH--FVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSV 332

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNAL 366
           EA+++FR +   G  P   T V VLN+C++ G  ELG  +   + K++ I         +
Sbjct: 333 EAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCM 392

Query: 367 VDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
           VD+  + GR+++A+   R MK   D     A++    IHG
Sbjct: 393 VDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHG 432



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 145/298 (48%), Gaps = 37/298 (12%)

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS---ARKVFDEMPVKNVVSWNSMIAGL 300
           I+  I  NH +  P V     + ++   C N+ S   A K+F      NV  + ++I GL
Sbjct: 51  IYAKIIRNHHHQDPFV-----VFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGL 105

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
                + + + ++ +M    L PD + +  VL +C     L+ G+ VH+ + K  ++++ 
Sbjct: 106 VLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNR 165

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS------------------YTAMIVGLA 402
            I   L+++Y KCG  + A  VF  M  RDV +                  +TAMI GL 
Sbjct: 166 SIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLV 225

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG--CKHFLDMSRVYNLQP 460
            +G++ +AL++F  M +  + P+EVT V VLSACS  G ++ G   + ++D  R+     
Sbjct: 226 RNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRI----- 280

Query: 461 QTEHY--GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK-VELAEI 515
           +  H+  G +++++ R G I EA  + + M    +   + +++    +H K VE  E+
Sbjct: 281 ELNHFVGGALINMYSRCGDIDEAQRVFEQMK-EKNVITYNSMIMGFALHGKSVEAVEL 337


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 196/531 (36%), Positives = 301/531 (56%), Gaps = 8/531 (1%)

Query: 78  LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + +  V +YN +I  L+ + + +EA   Y  M   G+  N  T   +L AC  S++L  G
Sbjct: 290 IADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG 349

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           + +H++  +    S+V + N L+ +YA CG +    +LF+       +RDL+SW  +I  
Sbjct: 350 KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFY----TMPKRDLISWNAIIAG 405

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y + +   EA+  +  M    ++P  +  + +LSAC+     + G  IH  I  +   + 
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS--GIK 463

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            +  + NAL++MY +CG++  A+ VF+    ++V+SWNSMIAG    G ++ A  +F+ M
Sbjct: 464 SNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEM 523

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           Q   L+PD+ T   VL+ C N   LELGK +H  + ++ +  D  +GNAL++MY +CG +
Sbjct: 524 QNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSL 583

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSA 435
             A  VF S++ RDV S+TAMI G A  G+  KA+++F +M   G  P D  TF  +LSA
Sbjct: 584 QDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSA 643

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           C+HAGLV EG + F  M   Y + P  EHYGC+V L GRA   +EA  LI  MP  PDA 
Sbjct: 644 CNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAA 703

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           VW  LLGAC+IH  + LAE    N ++        YIL++N+Y++  RW +  K+R+ M+
Sbjct: 704 VWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVME 763

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            R ++K PG S +EV    +EF   D+SHP+T EIY  L  +  + +  GY
Sbjct: 764 GRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGY 814



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 244/477 (51%), Gaps = 14/477 (2%)

Query: 83  VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           V  +N +I C +      +A  L+ EM   G +PN  T   +L AC+    L  G+++H+
Sbjct: 93  VISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHS 152

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             +K     +  V N+L+ +Y  CG +    ++F       + RD+VS+ T++  Y +  
Sbjct: 153 QIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFA----GISPRDVVSYNTMLGLYAQKA 208

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           Y  E +  F  M    + PD +  + +L A +    L  G +IH+   +   N   D+ +
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLN--SDIRV 266

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
             AL+ M ++CG++ SA++ F  +  ++VV +N++IA L   G   EA + + RM+  G+
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
             +  T + +LN+C+    LE GK +H+++ ++  ++D  IGNAL+ MYA+CG + +A  
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           +F +M  RD+ S+ A+I G A      +A+ ++ +M   G++P  VTF+ +LSAC+++  
Sbjct: 387 LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
             +G     D+ R   ++        +++++ R G + EA ++ +      D   W +++
Sbjct: 447 YADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWNSMI 504

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS-KNRWKEALKLRKKMKER 557
                H   E A  + + +   E E D   I   ++ S  KN   EAL+L K++  R
Sbjct: 505 AGHAQHGSYETAYKLFQEMQNEELEPDN--ITFASVLSGCKN--PEALELGKQIHGR 557



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 199/384 (51%), Gaps = 14/384 (3%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+ C + + L   +++HA  ++  +  ++++ N L+ +Y  C  +   H++F  ++ P+
Sbjct: 33  LLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF--KEMPR 90

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
             RD++SW +LI  Y +  +  +A   F +M  A   P+ +  + +L+AC    +L  G 
Sbjct: 91  --RDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           KIH  I    +   P V   N+L+ MY KCG++P AR+VF  +  ++VVS+N+M+     
Sbjct: 149 KIHSQIIKAGYQRDPRV--QNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
           +   KE L +F +M   G+ PD  T + +L++      L+ GK +H    +  +N+D  +
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRV 266

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           G ALV M  +CG +D A   F+ +  RDV  Y A+I  LA HG   +A + +  M   G+
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326

Query: 423 EPDEVTFVGVLSACSHAGLVEEGC---KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             +  T++ +L+ACS +  +E G     H  +     ++Q        ++ ++ R G + 
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGN----ALISMYARCGDLP 382

Query: 480 EALDLIKSMPLVPDAFVWGALLGA 503
           +A +L  +MP   D   W A++  
Sbjct: 383 KARELFYTMP-KRDLISWNAIIAG 405



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 147/288 (51%), Gaps = 4/288 (1%)

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D    V +L  C++   L    +IH  + +    + PD+F+ N LI+MY+KC ++  A +
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVE--AGVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VF EMP ++V+SWNS+I+    +G  K+A  +F  MQ  G  P+  T + +L +C +   
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           LE GK +H+ + K     D  + N+L+ MY KCG + +A  VF  +  RDV SY  M+  
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
            A      + L +F +MS  GI PD+VT++ +L A +   +++EG K    ++    L  
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKLTVEEGLNS 262

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
                  +V +  R G +  A    K +    D  V+ AL+ A   H 
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGIA-DRDVVVYNALIAALAQHG 309



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 6/202 (2%)

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
           H G  +E  D+    Q    + D  T V +L +C     L   K +H  + +  +  D F
Sbjct: 6   HCGPDRE--DVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIF 63

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           + N L++MY KC  +  A  VF+ M  RDV S+ ++I   A  G   KA  +F EM   G
Sbjct: 64  LSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAG 123

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
             P+++T++ +L+AC     +E G K H   +   Y   P+ ++   ++ ++G+ G +  
Sbjct: 124 FIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPR 181

Query: 481 ALDLIKSMPLVPDAFVWGALLG 502
           A  +   +    D   +  +LG
Sbjct: 182 ARQVFAGIS-PRDVVSYNTMLG 202


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 213/607 (35%), Positives = 333/607 (54%), Gaps = 19/607 (3%)

Query: 7   VASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI-----LY 61
           V SG R N+   F   S+++    LE S    Q ++ H ++IK G             +Y
Sbjct: 103 VLSGIRPNE---FSLSSMINVCTGLEDSV---QGRKIHGYLIKLGYDSDAFSANALVDMY 156

Query: 62  DKIISLSRGNEIENLSLQNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTL 120
            K+  L   + + +  +  P +  +N II  C+ +     A+ L REM   G+ PN +TL
Sbjct: 157 AKVGILEDASSVFD-EIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTL 215

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
              LKAC       +G+Q+H+  +K  + S+ ++   L+ +Y+ C  +     +F     
Sbjct: 216 SSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKL--- 272

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
              +RD+++W  +I  + + +   EA   F  M    +  +   L  VL + + L    +
Sbjct: 273 -MPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYM 331

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
             +IH     + F    D ++ N+LID Y KCG++  A +VF+E P+ ++V + S++   
Sbjct: 332 CRQIHALSLKSGFEF--DNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAY 389

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
              GQ +EAL ++  MQ  G+KPD F    +LN+CA++   E GK VH ++ K    +D 
Sbjct: 390 AQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDI 449

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
           F GN+LV+MYAKCG I+ A   F  +  R + S++AMI GLA HG   +AL +F +M +V
Sbjct: 450 FAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKV 509

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
           G+ P+ +T V VL AC+HAGLV E   +F  M  ++ ++P  EHY CM+DL GRAG +  
Sbjct: 510 GVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEA 569

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540
           A++L+  MP   +A VWGALLGA +IH  ++L E   E L+  EPE  G ++L+ NIY+S
Sbjct: 570 AMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYAS 629

Query: 541 KNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
              W +  ++R+ MK+ KVKK PG S +EV  + Y F  GD+SH ++ EIY  LDE+   
Sbjct: 630 VGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDL 689

Query: 601 SKNHGYI 607
            K  GY+
Sbjct: 690 LKKAGYV 696



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 144/449 (32%), Positives = 222/449 (49%), Gaps = 39/449 (8%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           M + G+  N +  P VLKAC  ++ L +G+QVH   + T   S+ +V N+L+ LYA CG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
                 LF         R +VSW  L   YV  D   EA+  F DM  + +RP+   L  
Sbjct: 61  FGDARSLF----DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSS 116

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +++ C+ L D   G KIH Y+    ++   D F  NAL+DMY K G +  A  VFDE+  
Sbjct: 117 MINVCTGLEDSVQGRKIHGYLIKLGYD--SDAFSANALVDMYAKVGILEDASSVFDEIAK 174

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
            ++VSWN++IAG         AL++ R M   G+ P+ FTL   L +CA +   ELG+ +
Sbjct: 175 PDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQL 234

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H+ L K  + +D F+G  L+DMY+KC  +D A  VF+ M  RD+ ++ A+I G + + + 
Sbjct: 235 HSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEED 294

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGLVEEG----------- 445
            +A  +F  M   GI  ++ T   VL + +           HA  ++ G           
Sbjct: 295 EEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSL 354

Query: 446 ------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMP---LVPDA 494
                 C H  D +RV+   P  +   +  +V  + + G   EAL L   M    + PD+
Sbjct: 355 IDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDS 414

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRF 523
           FV  +LL AC   +  E  + V  ++++F
Sbjct: 415 FVCSSLLNACASLSAYEQGKQVHVHILKF 443



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 230/477 (48%), Gaps = 21/477 (4%)

Query: 41  KQFHAFIIKTGSPQHQ-----TQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           KQ H  ++ TG    +       ILY K         + + ++ +  V  +N +  C  +
Sbjct: 30  KQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFD-AIPDRSVVSWNALFSCYVH 88

Query: 96  AN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           ++   EA++L+ +M++ G+ PN ++L  ++  C   +    G+++H Y +K    S+ + 
Sbjct: 89  SDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFS 148

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ +YA  G+++    +F     P    D+VSW  +I   V  +Y   A+    +M 
Sbjct: 149 ANALVDMYAKVGILEDASSVFDEIAKP----DIVSWNAIIAGCVLHEYHHRALELLREMN 204

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           ++ + P+   L   L AC+ +    LG ++H  +     ++  D F+   LIDMY KC +
Sbjct: 205 KSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK--MDMGSDSFLGVGLIDMYSKCNS 262

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  AR VF  MP +++++WN++I+G +   + +EA  +F  M   G+  +  TL  VL S
Sbjct: 263 MDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKS 322

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
            A +    + + +H    K+    D ++ N+L+D Y KCG ++ A  VF      D+  +
Sbjct: 323 IAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLF 382

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK---HFLD 451
           T+++   A  G+  +AL ++ EM   GI+PD      +L+AC+     E+G +   H L 
Sbjct: 383 TSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK 442

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
              + ++         +V+++ + G I +A      +P V     W A++G    H 
Sbjct: 443 FGFMSDIFAGNS----LVNMYAKCGSIEDASCAFSRIP-VRGIVSWSAMIGGLAQHG 494


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 210/622 (33%), Positives = 331/622 (53%), Gaps = 98/622 (15%)

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKA---------- 126
           ++NP  ++ N +++     N P +AI +Y+ ML   +  + YT P + ++          
Sbjct: 86  IENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDG 145

Query: 127 -CWQSQSLRVGQQVHAYSMKT------------------------------ALLS----- 150
            C Q   L+VG     Y   T                              ++L+     
Sbjct: 146 KCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLV 205

Query: 151 ----------------NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
                           NV   N+++ L+   G ++   KLF+       Q+DLVSW+ LI
Sbjct: 206 GNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFN----EMKQKDLVSWSALI 261

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT----D 250
             Y + +   EA++ F +M    +  D ++++ VLSACS+L  +  G  +H  +     +
Sbjct: 262 SCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIE 321

Query: 251 NHFNLSPDVFIH--------------------------NALIDMYLKCGNIPSARKVFDE 284
            + NL  +  IH                          N++I  Y+KCG I  AR +FD 
Sbjct: 322 TYVNLQ-NALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDS 380

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           MP K+ VSW++MI+G   + +F E L +F+ MQ  G KPD+  LV V+++C ++  L+ G
Sbjct: 381 MPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG 440

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           KW+H Y+ KN +  +  +G  L++MY K G ++ A  VF+ ++ + V ++ A+I+GLA++
Sbjct: 441 KWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMN 500

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G   K+L  FSEM + G+ P+E+TFV VL AC H GLV+EG +HF  M + + + P  +H
Sbjct: 501 GLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKH 560

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           YGCMVDL GRAG+++EA +LI+SMP+ PD   WGALLGACK +   E  E +   LV   
Sbjct: 561 YGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELH 620

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           P+ DG  +L++NIY+SK  W + L++R  M++  V KTPGCS++E +G  +EF  GDK+H
Sbjct: 621 PDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTH 680

Query: 585 PKTLEIYKLLDEIMHQSKNHGY 606
           P+   I  +LDE+  + K  GY
Sbjct: 681 PQNEHIEHMLDEMAKKLKLEGY 702



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 204/450 (45%), Gaps = 64/450 (14%)

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
           L  T TLP +     + Q+++   Q+ +  + +    + +  + L++       I  +++
Sbjct: 20  LKPTLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFIN-INQ 78

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
            +    H +     +   T+++ Y++ + P +AI  +  M ++N+  D     I+  +CS
Sbjct: 79  SYQIFSHIENPNGFIC-NTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCS 137

Query: 234 -KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
            +L +   G  I  ++    F+   DV+I N LI+MY  CGN+  ARKVFD   V ++VS
Sbjct: 138 IRLAEFD-GKCIQDHVLKVGFD--SDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVS 194

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WNSM+AG    G  +EA D++ RM                                   +
Sbjct: 195 WNSMLAGYVLVGNVEEAKDVYDRMP----------------------------------E 220

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           +N I +     N+++ ++ K G +++A  +F  MK +D+ S++A+I     +    +AL 
Sbjct: 221 RNVIAS-----NSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALI 275

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSH-----AGLVEEGCKHFLDMSRVYNLQPQTEH-YG 466
           +F EM+  GI  DEV  + VLSACS       G +  G    + +    NLQ    H Y 
Sbjct: 276 LFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYS 335

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
              ++     L  E+  L        D   W +++       ++E A  + +++    P+
Sbjct: 336 SCEEVVTAQKLFSESCCL--------DQISWNSMISGYVKCGEIEKARALFDSM----PD 383

Query: 527 GDG-AYILMTNIYSSKNRWKEALKLRKKMK 555
            D  ++  M + Y+ ++R+ E L L ++M+
Sbjct: 384 KDNVSWSAMISGYAQQDRFTETLVLFQEMQ 413


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 189/508 (37%), Positives = 300/508 (59%), Gaps = 7/508 (1%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQ-SQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           ++ L+ ++L  GLLP+ +T+  VL+AC    +S  VG+QVH  ++K  ++ + +V   L+
Sbjct: 382 SLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALI 441

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+  G ++    LFH     Q   DL SW  ++  +   D   EA+  F  M +   +
Sbjct: 442 DVYSKGGKMEEAELLFH----NQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEK 497

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            D +       A   L  L  G +IH  +    F+   D+F+ + ++DMYLKCG + SAR
Sbjct: 498 ADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHY--DLFVISGILDMYLKCGEMKSAR 555

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVF+++P  + V+W ++I+G    G+ ++AL  + +M+  G++PD++T   ++ +C+ + 
Sbjct: 556 KVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLT 615

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            LE GK +H  + K +   D F+  +LVDMYAKCG I+ A+G+FR M  R V  + AMIV
Sbjct: 616 ALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIV 675

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           GLA HG A +AL+ F+EM   G+ PD VTF+GVLSACSH+GL  +  K+F  M + Y ++
Sbjct: 676 GLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVE 735

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P+ EHY C+VD   RAG I+EA  ++ SMP    A ++  LL AC++    E  E V E 
Sbjct: 736 PEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEK 795

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L   +P    AY+L++NIY++ N+W+ A+  R  MK   VKK PG S +++  + + F  
Sbjct: 796 LFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVA 855

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GD+SH +T  IY  ++ +M + K  GY+
Sbjct: 856 GDRSHEETDLIYNKVEYVMKRIKEEGYV 883



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 131/538 (24%), Positives = 225/538 (41%), Gaps = 80/538 (14%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           LLP  ++   +L+       L +G++ HA  + + L  + YV N L+ +YA CG + +  
Sbjct: 12  LLPQWFS---ILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSAR 68

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYV------KMDYPTEAILSFFDMCQANLRPDGMILV 226
           KLF     PQ+ RDLV++  ++ AY        ++   EA   F  + Q+ +      L 
Sbjct: 69  KLFDIT--PQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLS 126

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
            +   C   G  S    +  Y       L  DVF+  AL+++Y K   I  AR +FD MP
Sbjct: 127 PLFKLCLLYGSPSASEALQGYAV--KIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMP 184

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-K 345
           V++VV WN M+      G   E L +F      GL+PD  ++  +L         E   +
Sbjct: 185 VRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELE 244

Query: 346 WVHTYLDKNHI---NTDGFIGNALVDMYAKCGRIDQAFGVFRSM-KCR---DVYSYTAMI 398
            V  Y  K  +   ++D  + N  +  Y + G   +A   FR M K R   D  +Y  ++
Sbjct: 245 QVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVIL 304

Query: 399 ----------VGLAIHGK----AW--------KALDIFSEMSQVGI---------EPDEV 427
                     +G  IHG      W         A++++ +   V           E D +
Sbjct: 305 SVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLI 364

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           ++  V+S C+ +GL E   + F+D+ R           G + D F    ++R    L +S
Sbjct: 365 SWNTVISGCARSGLEECSLRLFIDLLR----------SGLLPDQFTITSVLRACSSLEES 414

Query: 488 -------------MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
                          +V D+FV  AL+       K+E AE++  N   F+     ++  M
Sbjct: 415 YCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDL---ASWNAM 471

Query: 535 TNIYSSKNRWKEALKLRKKMKER--KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
            + ++  + ++EAL+L   M ER  K  +    +  +  G     ++G + H   +++
Sbjct: 472 MHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKM 529


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 185/515 (35%), Positives = 302/515 (58%), Gaps = 28/515 (5%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           +SN      + +Y++M+  G+  +  T+  VL  C  S +L +G+ VH+ ++K++    +
Sbjct: 227 VSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRI 286

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
              NTL+ +Y+ CG +    ++F        +R++VSWT++I  Y +      AI     
Sbjct: 287 NFSNTLLDMYSKCGDLDGALRVFE----KMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQ 342

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +  ++ D + +  +L AC++ G L  G  +H YI  N  N+  ++F+ NAL+DMY KC
Sbjct: 343 MEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN--NMESNLFVCNALMDMYAKC 400

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G++ +A  VF  M VK+++SWN+MI  L                     KPD  T+ CVL
Sbjct: 401 GSMEAANSVFSTMVVKDIISWNTMIGEL---------------------KPDSRTMACVL 439

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +CA++  LE GK +H Y+ +N  ++D  + NALVD+Y KCG +  A  +F  +  +D+ 
Sbjct: 440 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 499

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+T MI G  +HG   +A+  F+EM   GIEPDEV+F+ +L ACSH+GL+E+G + F  M
Sbjct: 500 SWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIM 559

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              +N++P+ EHY CMVDL  R G + +A + ++++P+ PDA +WGALL  C+ +  +EL
Sbjct: 560 KNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIEL 619

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           AE V E +   EPE  G Y+L+ NIY+   +W+E  +LR+K+ ++ ++K PGCS +E+ G
Sbjct: 620 AEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKG 679

Query: 573 EFYEFRKGDK-SHPKTLEIYKLLDEIMHQSKNHGY 606
           +   F  G+  SHP +  I  LL ++  + K  G+
Sbjct: 680 KVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGH 714



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 180/378 (47%), Gaps = 49/378 (12%)

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFR-------QHPQA---------QRDLVSWTTLI 194
           NVY++N ++  YA  G  K    LF          + P++          RD++SW ++I
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMI 223

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
             YV        +  +  M    +  D   ++ VL  C+  G LSLG  +H     + F 
Sbjct: 224 SGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE 283

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
               +   N L+DMY KCG++  A +VF++M  +NVVSW SMIAG T  G+   A+ + +
Sbjct: 284 RR--INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQ 341

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           +M+  G+K D   +  +L++CA  G L+ GK VH Y+  N++ ++ F+ NAL+DMYAKCG
Sbjct: 342 QMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCG 401

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            ++ A  VF +M  +D+ S+  MI  L                     +PD  T   VL 
Sbjct: 402 SMEAANSVFSTMVVKDIISWNTMIGEL---------------------KPDSRTMACVLP 440

Query: 435 ACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLF---GRAGLIREALDLIKSMPL 490
           AC+    +E G + H   +   Y+      +   +VDL+   G  GL R   D+I S  L
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 491 VPDAFVWGALLGACKIHA 508
           V     W  ++    +H 
Sbjct: 499 VS----WTVMIAGYGMHG 512



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 179/395 (45%), Gaps = 60/395 (15%)

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
           T T   VL+ C   +S   G++VH+     ++  +  +   L+  YA CG +K   ++F 
Sbjct: 99  TKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFD 158

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
             +    ++++  W  ++  Y                                   +K+G
Sbjct: 159 TME----KKNVYLWNFMVSEY-----------------------------------AKIG 179

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP-SARKVFDEMPVKNVVSWNS 295
           D    I + + + +                      G  P SA ++FD++  ++V+SWNS
Sbjct: 180 DFKESICLFKIMVEKGIE------------------GKRPESAFELFDKLCDRDVISWNS 221

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           MI+G    G  +  L I+++M  LG+  D  T++ VL  CAN G L LGK VH+   K+ 
Sbjct: 222 MISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
                   N L+DMY+KCG +D A  VF  M  R+V S+T+MI G    G++  A+ +  
Sbjct: 282 FERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQ 341

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           +M + G++ D V    +L AC+ +G ++ G K   D  +  N++        ++D++ + 
Sbjct: 342 QMEKEGVKLDVVAITSILHACARSGSLDNG-KDVHDYIKANNMESNLFVCNALMDMYAKC 400

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
           G + EA + + S  +V D   W  ++G  K  ++ 
Sbjct: 401 GSM-EAANSVFSTMVVKDIISWNTMIGELKPDSRT 434



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 97/250 (38%), Gaps = 54/250 (21%)

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           V  +N+ I      G  + A+++    Q   L+    T   VL  CA +     GK VH+
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELICMCQKSELETK--TYGSVLQLCAGLKSFTDGKKVHS 123

Query: 350 YLDKNHINTDGFIGNALVDMYAKCG----------------------------------- 374
            +  N +  DG +G  LV  YA CG                                   
Sbjct: 124 IIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 375 ----------------RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
                           R + AF +F  +  RDV S+ +MI G   +G   + L I+ +M 
Sbjct: 184 SICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM 243

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
            +GI+ D  T + VL  C+++G +  G K    ++   + + +      ++D++ + G +
Sbjct: 244 YLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKCGDL 302

Query: 479 REALDLIKSM 488
             AL + + M
Sbjct: 303 DGALRVFEKM 312


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 214/596 (35%), Positives = 327/596 (54%), Gaps = 18/596 (3%)

Query: 22   LSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI------LYDKIISLSRGNEIEN 75
            LS   +   L+  K  GQ  + HA++ ++G    +  I      +Y K  ++     +  
Sbjct: 458  LSTFTEFSNLKEGKRKGQ--EVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQ 515

Query: 76   LSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
            L      V   + I     N    EA++ +  M   G++P+ +++   L +C     L +
Sbjct: 516  LMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTL 575

Query: 136  GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            G+Q+H    K  L  +V V N L+ LYA    I    K+F   Q P+   D VSW + I 
Sbjct: 576  GRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFF--QMPE--YDQVSWNSFIG 631

Query: 196  AYVKMDYPT-EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
            A  K +    +A+  F +M QA  RP+ +  + +L+A S    L LG +IH  I    ++
Sbjct: 632  ALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILK--YS 689

Query: 255  LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIF 313
            ++ D  I NAL+  Y KC  +     +F  M  + + VSWNSMI+G  H G   +A+D+ 
Sbjct: 690  VADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLV 749

Query: 314  RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
              M   G K D FT   VL++CA++  LE G  VH    +  + +D  +G+ALVDMYAKC
Sbjct: 750  WPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKC 809

Query: 374  GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
            G+ID A   F  M  R++YS+ +MI G A HG   KAL IF+ M Q G  PD VTFVGVL
Sbjct: 810  GKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVL 869

Query: 434  SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
            SACSH GLV+EG KHF  M  VY L P+ EH+ CMVDL GRAG +++  D IK+MP+ P+
Sbjct: 870  SACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPN 929

Query: 494  AFVWGALLGA-CKIHAK-VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
              +W  +LGA C+ + +  EL +   + L+  EP+    Y+L++N++++   W++ ++ R
Sbjct: 930  ILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEAR 989

Query: 552  KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              M++  VKK  GCS V +    + F  GD++HP+  +IY+ L E+M++ ++ GY+
Sbjct: 990  LAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYV 1045



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 143/529 (27%), Positives = 246/529 (46%), Gaps = 33/529 (6%)

Query: 1   MASPLTVASGSRYNDINTF---------QQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG 51
           MAS L +   ++YN   TF         Q   L  +  R ++S S+      H  + KTG
Sbjct: 111 MASHLFMRLLNKYNSTYTFLRHYTFSHSQLQQLDSEFDRYKTSSSLYDANHLHLQLYKTG 170

Query: 52  SPQH----QTQI-LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYR 106
                    T I +Y +I +L    ++ +   Q   V     I     N  P EA +L++
Sbjct: 171 FTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFK 230

Query: 107 EMLIKGLLPNTYTLPYVLKACWQ--SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
            ++  GLLPN + +   L+AC Q  S  +++G Q+HA+  K   +S++ + N LM +Y+ 
Sbjct: 231 GVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSD 290

Query: 165 C-GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM----CQANLR 219
           C G I   H++F   +     R+ V+W ++I  Y +      A   F  M     + NLR
Sbjct: 291 CSGSIDDAHRVFDEIKF----RNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLR 346

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+   L  +++A   L D  L +               D+++ +AL++ + + G +  A+
Sbjct: 347 PNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAK 406

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +F +M  +N V+ N ++ GL  + Q +EA  +F+ M+ L ++ +  +LV +L++     
Sbjct: 407 MIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VEINSESLVVLLSTFTEFS 465

Query: 340 WLELGKW----VHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
            L+ GK     VH YL ++  ++    IGNALV+MY KC  ID A  VF+ M  +D  S+
Sbjct: 466 NLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSW 525

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            +MI GL  + +  +A+  F  M + G+ P   + +  LS+CS  G +  G +       
Sbjct: 526 NSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLG-RQIHGEGF 584

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
            + L         ++ L+     I E   +   MP   D   W + +GA
Sbjct: 585 KWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEY-DQVSWNSFIGA 632



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 196/398 (49%), Gaps = 23/398 (5%)

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
           S SL     +H    KT    +V+  NTL+ +Y   G + +  KLF        Q++LVS
Sbjct: 153 SSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFD----EMPQKNLVS 208

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD--LSLGIKIHRY 247
           W+ LI  Y +   P EA   F  +  + L P+   +   L AC + G   + LG++IH +
Sbjct: 209 WSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAF 268

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKC-GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
           I         D+ + N L+ MY  C G+I  A +VFDE+  +N V+WNS+I+    RG  
Sbjct: 269 ICK--LPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDA 326

Query: 307 KEALDIFRRMQ----GLGLKPDDFTLVCVLN---SCANIGWLELGKWVHTYLDKNHINTD 359
             A  +F  MQ     L L+P+++TL  ++    S A+ G L L + + T ++K+    D
Sbjct: 327 VSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCG-LVLLEQMLTRIEKSGFLRD 385

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            ++G+ALV+ +A+ G +D A  +F+ M  R+  +   ++VGLA   +  +A  +F EM  
Sbjct: 386 LYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKD 445

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS----RVYNLQPQTEHYGCMVDLFGRA 475
           + +E +  + V +LS  +    ++EG +   ++     R   +  +      +V+++G+ 
Sbjct: 446 L-VEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKC 504

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
             I  A  + + MP   D   W +++     + + E A
Sbjct: 505 TAIDNACSVFQLMP-SKDTVSWNSMISGLDHNERFEEA 541



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 170/341 (49%), Gaps = 30/341 (8%)

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
            + DVF  N LI++Y++ GN+ SARK+FDEMP KN+VSW+ +I+G T      EA  +F+
Sbjct: 171 FTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFK 230

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIG--WLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
            +   GL P+ F +   L +C   G   ++LG  +H ++ K    +D  + N L+ MY+ 
Sbjct: 231 GVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSD 290

Query: 373 C-GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE----PDEV 427
           C G ID A  VF  +K R+  ++ ++I      G A  A  +FS M   G+E    P+E 
Sbjct: 291 CSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEY 350

Query: 428 TFVG-VLSACSHA--GLVEEGCKHFLD--MSRVYNLQPQTEHY--GCMVDLFGRAGLIRE 480
           T    V +ACS A  GLV       L+  ++R+       + Y    +V+ F R GL+  
Sbjct: 351 TLCSLVTAACSLADCGLV------LLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDC 404

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV--MENLVRFEPEG----DGAYILM 534
           A  + K M       + G ++G  + H   E A++   M++LV    E        +   
Sbjct: 405 AKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTEF 464

Query: 535 TNIYSSKNRWKE--ALKLRKKMKERKVKKTPGCSLVEVYGE 573
           +N+   K + +E  A   R  + + ++  + G +LV +YG+
Sbjct: 465 SNLKEGKRKGQEVHAYLFRSGLVDARI--SIGNALVNMYGK 503


>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 192/477 (40%), Positives = 293/477 (61%), Gaps = 12/477 (2%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P   I +YR  +  G  P+ +T P V KAC +   +R G+Q+H    K     ++YV N+
Sbjct: 87  PRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGTVTKMGFYDDIYVQNS 146

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+  Y VCG  +   K+F   Q P   RD+VSWT +I  + +     EA+ +F  M   +
Sbjct: 147 LVHFYGVCGESRNACKVFD--QMPV--RDVVSWTGIITGFTRTGLYKEALDTFSKM---D 199

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           + P+    V  L +  ++G LSLG  IH  I      +S +    NALIDMY+KC  +  
Sbjct: 200 VEPNLATYVCALVSSGRVGCLSLGKGIHGLILKRASLISLET--GNALIDMYVKCEQLSD 257

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GLGLKPDDFTLVCVLNSCA 336
           A  VF E+  K+ VSWNSMI+GL H  +  EA+++F  MQ   G+KPD   L  VL++CA
Sbjct: 258 AMTVFGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACA 317

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           ++G ++ G+WVH Y+    I  D  IG A+VDMYAKCG I+ A  +F  ++ ++V+++ A
Sbjct: 318 SLGAVDYGRWVHEYVLSAGIKWDTHIGTAIVDMYAKCGYIETALKIFNGIRRKNVFTWNA 377

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM-SRV 455
           ++ GLAIHG   ++L  F EM ++G +P+ VTF+ +L+AC H GLV+EG ++F  M +R 
Sbjct: 378 LLGGLAIHGHGHESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVDEGRRYFHKMKTRE 437

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV-ELAE 514
           YNL P+ EHYGC++DLF RAGL+ EAL+LIK+MP+ PD  + GA+L ACK    + EL +
Sbjct: 438 YNLSPKLEHYGCLIDLFCRAGLLDEALELIKAMPVKPDVRICGAVLSACKSRGTLMELPK 497

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
            ++++ +  E E  G Y+L++NI+++  RW +  ++R+ MK + + K PG S +E +
Sbjct: 498 EILDSFLEMEFEDSGVYVLLSNIFAANRRWDDVSRIRRLMKVKGISKVPGSSSIEKF 554


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 205/559 (36%), Positives = 311/559 (55%), Gaps = 43/559 (7%)

Query: 79  QNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           + P  Y+   +++  L    P  A+ L+R +L   L  +  T+ + +KA   S S    +
Sbjct: 93  EGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPT--E 150

Query: 138 QVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            +H  + K   +  +V   N L+ +Y    L+    KLF       A RD+VSWTTLI  
Sbjct: 151 AIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFD----EMADRDVVSWTTLIDG 206

Query: 197 YVKMDYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           Y +   P EA   F  M  A ++ P+ + LV   SA  ++G L LG  +H+ I ++   +
Sbjct: 207 YARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRM 266

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK--------------------------- 288
           S  V + NAL+DM+ KCG + +A++VFD MP+K                           
Sbjct: 267 S--VNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKE 324

Query: 289 ----NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
               NVVSW+ M+A  +H     EA+ IF  M   G++P D TLV VL++CA +  L++G
Sbjct: 325 IPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVG 384

Query: 345 KWVH-TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
            W++ TY+  + +     + NA +DM+AKCG +  A  +F +M+ ++V S+  MI+   +
Sbjct: 385 TWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGL 444

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           HG+  +AL +F E    GI PDE T++GVLSACSH GLV EG  HF +M  VY ++P+ E
Sbjct: 445 HGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAE 504

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           HY CM+DL G+ GL++EA ++ +SMP+  D   WGALL AC++H  VE+ +   + L   
Sbjct: 505 HYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGL 564

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           +P   G Y+LM+ IY+SK++W +   LR  M++R+VKK PGCS +EV G+ +EF   D S
Sbjct: 565 DPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHEFLVADVS 624

Query: 584 HPKTLEIYKLLDEIMHQSK 602
           H  + +IY  L  I   SK
Sbjct: 625 HVHSEDIYAALGNIYLHSK 643


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/481 (40%), Positives = 284/481 (59%), Gaps = 45/481 (9%)

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY----PTEAILSFF-DMCQANLRPD 221
           LI + H   HF  HP  +  L  W TLI+A+V+       PT + +S F  M    ++PD
Sbjct: 7   LISSTHPTLHF-SHPTLESFL--WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPD 63

Query: 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
                 +L + +    L LG  +H  I    F L+ D F+  +LI MY  CGN+  AR+V
Sbjct: 64  FHTFPFLLQSFASPSLLHLGRSVHAQIL--RFGLAIDPFVQTSLISMYSSCGNLGFARQV 121

Query: 282 FDE-------------------------------MPVKNVVSWNSMIAGLTHRGQFKEAL 310
           FDE                               MP +NV+SW+ MI G    GQ+KEAL
Sbjct: 122 FDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEAL 181

Query: 311 DIFRRMQGLGL---KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
            +FR MQ LG+   +P++FT+  VL +C  +G LE GKW H Y+DK  +  D  +G AL+
Sbjct: 182 ALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALI 241

Query: 368 DMYAKCGRIDQAFGVFRSM-KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           DMYAKCG +++A  VF ++   +DV +++AMI GLA+HG A + + +FS+M   G+ P+ 
Sbjct: 242 DMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNA 301

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           VTF+ V  AC H GLV EG  +   M+  Y++ P  +HYGCMVDL+GRAG I+EA +++K
Sbjct: 302 VTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVK 361

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546
           SMP+ PD  VWGALL   ++H  +E  E+ ++ L+  EP   GAY+L++N+Y+ + RW++
Sbjct: 362 SMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWED 421

Query: 547 ALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
              +R  M+   +KK PGCSL+EV G  +EF  GD SHP+T +I+ +L+EI+ + K  GY
Sbjct: 422 VRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGY 481

Query: 607 I 607
           +
Sbjct: 482 V 482



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 182/367 (49%), Gaps = 49/367 (13%)

Query: 82  QVYLYNFIIQC--LSNANPL----EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           + +L+N +I+    + A P       I+++  M   G+ P+ +T P++L++      L +
Sbjct: 23  ESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHL 82

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ------------- 182
           G+ VHA  ++  L  + +V  +L+ +Y+ CG +    ++F     P              
Sbjct: 83  GRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQ 142

Query: 183 --------------AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA---NLRPDGMIL 225
                          +R+++SW+ +I  YV+     EA+  F +M      ++RP+   +
Sbjct: 143 AGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTM 202

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
             VL+AC +LG L  G   H YI  +   +  DV +  ALIDMY KCG++  A  VF  +
Sbjct: 203 SGVLAACGRLGALEHGKWAHAYI--DKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNL 260

Query: 286 -PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
            P K+V++W++MI+GL   G  +E + +F +M   G++P+  T + V  +C + G +  G
Sbjct: 261 GPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEG 320

Query: 345 KWVHTYL-----DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMI 398
           K    YL     D + I T    G  +VD+Y + GRI +A+ V +SM    DV  + A++
Sbjct: 321 K---DYLRRMTEDYSIIPTIQHYG-CMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALL 376

Query: 399 VGLAIHG 405
            G  +HG
Sbjct: 377 SGSRMHG 383



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 108/212 (50%), Gaps = 8/212 (3%)

Query: 100 EAIALYREMLIKGL---LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           EA+AL+REM + G+    PN +T+  VL AC +  +L  G+  HAY  K  +  +V +  
Sbjct: 179 EALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGT 238

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+ +YA CG ++    +F    +    +D+++W+ +I          E +  F  M   
Sbjct: 239 ALIDMYAKCGSVEKATWVF---SNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQ 295

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            +RP+ +  + V  AC   G +S G    R +T++ +++ P +  +  ++D+Y + G I 
Sbjct: 296 GVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTED-YSIIPTIQHYGCMVDLYGRAGRIK 354

Query: 277 SARKVFDEMPVK-NVVSWNSMIAGLTHRGQFK 307
            A  V   MP++ +V+ W ++++G    G  +
Sbjct: 355 EAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 386


>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
 gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g05240
 gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/571 (36%), Positives = 321/571 (56%), Gaps = 38/571 (6%)

Query: 26  HQSP---RLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSR-------GNEIEN 75
           H  P   +LE+ +S+ +L Q H  +IK+         +   +I LSR         E  N
Sbjct: 5   HYKPILSQLENCRSLVELNQLHGLMIKSS--------VIRNVIPLSRLIDFCTTCPETMN 56

Query: 76  LS--------LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKA 126
           LS        +  P VY++N +I+  SN+ NP +A+  Y+EML KG  P+ +T PYVLKA
Sbjct: 57  LSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKA 116

Query: 127 CWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRD 186
           C   + ++ G  VH + +KT    N+YV   L+ +Y  CG +   + L  F   PQ   +
Sbjct: 117 CSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVN--YGLRVFEDIPQW--N 172

Query: 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
           +V+W +LI  +V  +  ++AI +F +M    ++ +  I+V +L AC +  D+  G   H 
Sbjct: 173 VVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHG 232

Query: 247 YITDNHFN------LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           ++    F+      +  +V +  +LIDMY KCG++ +AR +FD MP + +VSWNS+I G 
Sbjct: 233 FLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGY 292

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
           +  G  +EAL +F  M  LG+ PD  T + V+ +    G  +LG+ +H Y+ K     D 
Sbjct: 293 SQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDA 352

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            I  ALV+MYAK G  + A   F  ++ +D  ++T +I+GLA HG   +AL IF  M + 
Sbjct: 353 AIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEK 412

Query: 421 G-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
           G   PD +T++GVL ACSH GLVEEG ++F +M  ++ L+P  EHYGCMVD+  RAG   
Sbjct: 413 GNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFE 472

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA  L+K+MP+ P+  +WGALL  C IH  +EL + +   +   E  G G Y+L++NIY+
Sbjct: 473 EAERLVKTMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYA 532

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
              RW +   +R+ MK ++V K  G S VE 
Sbjct: 533 KAGRWADVKLIRESMKSKRVDKVLGHSSVET 563


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 189/507 (37%), Positives = 294/507 (57%), Gaps = 6/507 (1%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+ L   M  +G  P++ T+  +L A     SLR+G+ +H YSM+    S V V   L+ 
Sbjct: 260 ALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVD 319

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y+ CG +     +F         + +VSW ++I  YV+   P  A+  F  M    +  
Sbjct: 320 MYSKCGSVGTARLIFD----RMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEM 375

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
             + ++  L AC+ LGD+  G  +H+ +  +   L  DV + N+LI MY KC  +  A +
Sbjct: 376 TNVTVMGALHACADLGDVEQGRFVHKLL--DQLELGSDVSVMNSLISMYSKCKRVDIAAE 433

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           +F+ +  K +VSWN+MI G    G+  EA+D F +MQ   +KPD FT+V V+ + A +  
Sbjct: 434 IFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSV 493

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L   KW+H  + +  ++ + F+  ALVDMYAKCG +  A  +F  M  R V ++ AMI G
Sbjct: 494 LPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDG 553

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
              HG    AL++F +M +  I+P+EVTF+ VLSACSH+GLVEEG ++F  M + Y L+P
Sbjct: 554 YGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEP 613

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
             +HYG MVDL GRA  + EA D I+ MP+ P   V+GA+LGAC+IH  VEL E     +
Sbjct: 614 AMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRI 673

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
              +P+  G ++L+ NIY++ + W +  ++R  M+++ ++KTPG S+VE+  E + F  G
Sbjct: 674 FDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSG 733

Query: 581 DKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             SHP+  +IY  L+ + ++ K  GY+
Sbjct: 734 TTSHPQAKKIYAFLETLGNRIKAAGYM 760



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 166/566 (29%), Positives = 282/566 (49%), Gaps = 50/566 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKTG-SPQH--QTQI--LYDKIISLSRGNEIENLSLQNPQVYL 85
           LE   S+ +L QF   IIK G   +H  QT++  L+ K  SL     +    +++    L
Sbjct: 84  LELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQ-PIEDKIDEL 142

Query: 86  YNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           Y+ +++  +  + L+ A++ +  M   G+ P  Y   Y+LK C  +  LR G+++H   +
Sbjct: 143 YHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLI 202

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
                SNV+    ++ +YA C L++  +K+F        +RDLV W T+I  Y +  +  
Sbjct: 203 VNGFASNVFAMTGVVNMYAKCRLVEEAYKMF----DRMPERDLVCWNTIISGYAQNGFGK 258

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A+     M +   RPD + +V +L A + +G L +G  IH Y     F     V +  A
Sbjct: 259 TALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGF--ESFVNVSTA 316

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L+DMY KCG++ +AR +FD M  K VVSWNSMI G    G    A++IF++M    ++  
Sbjct: 317 LVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMT 376

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
           + T++  L++CA++G +E G++VH  LD+  + +D  + N+L+ MY+KC R+D A  +F 
Sbjct: 377 NVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFE 436

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA----- 439
           +++ + + S+ AMI+G A +G+  +A+D F +M    I+PD  T V V+ A +       
Sbjct: 437 NLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQ 496

Query: 440 -----GLVEEGC--------KHFLDM----------SRVYNL--QPQTEHYGCMVDLFGR 474
                GLV   C           +DM           +++++  +     +  M+D +G 
Sbjct: 497 AKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGT 556

Query: 475 AGLIREALDLIKSMP---LVPDAFVWGALLGACKIHAKVELAEIVMENLVR---FEPEGD 528
            GL + AL+L + M    + P+   +  +L AC     VE       ++ +    EP  D
Sbjct: 557 HGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMD 616

Query: 529 GAYILMTNIYSSKNRWKEALKLRKKM 554
             Y  M ++    NR  EA    +KM
Sbjct: 617 -HYGAMVDLLGRANRLNEAWDFIQKM 641



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 5/219 (2%)

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
           I+L  C+ + +L   I +   I  N   L  +      L+ ++ K G++  A +VF  + 
Sbjct: 82  ILLELCTSMKELHQFIPL---IIKN--GLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIE 136

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
            K    +++M+ G        +A+  F RM+  G++P  +    +L  C +   L  GK 
Sbjct: 137 DKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKE 196

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           +H  L  N   ++ F    +V+MYAKC  +++A+ +F  M  RD+  +  +I G A +G 
Sbjct: 197 IHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGF 256

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
              AL++   M + G  PD +T V +L A +  G +  G
Sbjct: 257 GKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIG 295


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/581 (34%), Positives = 321/581 (55%), Gaps = 15/581 (2%)

Query: 33  SSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIEN--LSLQNPQVYLYNF 88
           S+ ++ + +Q H+++IK G  S       L D  ++ S         L+ Q   V L+N 
Sbjct: 326 SNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNV 385

Query: 89  IIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           ++      + L E+  ++R+M IKGL+PN +T P +L+ C    +L +G+Q+H   +KT 
Sbjct: 386 MLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTG 445

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
              NVYV + L+ +YA  G +   H +         + D+VSWT LI  Y + +   EA+
Sbjct: 446 FQFNVYVCSVLIDMYAKHGKLDTAHVILR----TLTEDDVVSWTALISGYAQHNLFAEAL 501

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH--RYITDNHFNLSPDVFIHNAL 265
             F +M    ++ D +     +SAC+ +  L+ G +IH   Y++      S D+ I NAL
Sbjct: 502 KHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVS----GYSEDLSIGNAL 557

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           + +Y +CG I  A   F+++  K+ +SWN +I+G    G  ++AL +F +M    L+   
Sbjct: 558 VSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASF 617

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
           FT    +++ ANI  ++ GK +H  + K   ++D  + NAL+  YAKCG I+ A   F  
Sbjct: 618 FTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCE 677

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
           M  ++  S+ AMI G + HG   +A+++F +M QVG  P+ VTFVGVLSACSH GLV +G
Sbjct: 678 MPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKG 737

Query: 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505
             +F  MS+ + L P+  HY C+VDL  RAG +  A   I+ MP+ PDA +W  LL AC 
Sbjct: 738 LGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACT 797

Query: 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGC 565
           +H  VE+ E   ++L+  EPE    Y+L++N+Y+   +W    + R+ M+ R VKK PG 
Sbjct: 798 VHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGR 857

Query: 566 SLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           S +EV    + F  GD+ HP   +IY+ L E+  ++   GY
Sbjct: 858 SWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGY 898



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 246/489 (50%), Gaps = 30/489 (6%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL--SRGN---------EIENLSLQNP 81
           +S S+ + K+ H  I+K G       +L +K++ +  + G+         ++ N S+++ 
Sbjct: 22  NSGSLVECKKLHGKILKLGFGNES--VLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSW 79

Query: 82  QVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ-SLRVGQQVH 140
              +  F+ + +SN      + L+  M+ + + P   +   VL+AC   +  +R  +Q+H
Sbjct: 80  DKIISGFMEKKMSN----RVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIH 135

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           A  +   LL +  + N L+ LYA  GLI +  K+F         +D VSW  +I  + + 
Sbjct: 136 ARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFD----NLCTKDSVSWVAMISGFSQN 191

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
            Y  EAI  F +M  A + P   +   VLS C+K+    +G ++H  +    +  S + +
Sbjct: 192 GYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFK--YGSSLETY 249

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           + NAL+ +Y +  N  SA KVF +M  K+ VS+NS+I+GL  +G    AL++F +M+   
Sbjct: 250 VCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDY 309

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           LKPD  T+  +L++CA+ G L  G+ +H+Y+ K  I++D  +  AL+D+Y  C  I  A 
Sbjct: 310 LKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAH 369

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            +F + +  +V  +  M+V         ++  IF +M   G+ P++ T+  +L  C+  G
Sbjct: 370 EMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVG 429

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGC--MVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
            ++ G +     ++V     Q   Y C  ++D++ + G +  A  +++++    D   W 
Sbjct: 430 ALDLGEQIH---TQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWT 485

Query: 499 ALLGACKIH 507
           AL+     H
Sbjct: 486 ALISGYAQH 494



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 209/448 (46%), Gaps = 44/448 (9%)

Query: 111 KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170
           +G+  N  T  ++L  C  S SL   +++H   +K    +   + N L+ +Y   G +  
Sbjct: 4   RGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDG 63

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
           V K+F         R + SW  +I  +++       +  F  M + N+ P  +    VL 
Sbjct: 64  VVKVFE----DMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLR 119

Query: 231 ACS--KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           ACS  ++G +    +IH  I  +    SP   I N LI +Y K G I SARKVFD +  K
Sbjct: 120 ACSGHRIG-IRYAEQIHARIICHGLLCSP--IISNPLIGLYAKNGLIISARKVFDNLCTK 176

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           + VSW +MI+G +  G  +EA+ +F  M   G+ P  +    VL+ C  I   ++G+ +H
Sbjct: 177 DSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLH 236

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
             + K   + + ++ NALV +Y++      A  VF  M+ +D  S+ ++I GLA  G + 
Sbjct: 237 ALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSD 296

Query: 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG----------------------- 445
            AL++F++M +  ++PD VT   +LSAC+  G + +G                       
Sbjct: 297 GALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALL 356

Query: 446 -----CKHFLDMSRVYNLQPQTEH---YGCMVDLFGRAGLIREALDLIKSMP---LVPDA 494
                C        ++ L  QTE+   +  M+  FG+   + E+  + + M    L+P+ 
Sbjct: 357 DLYVNCSDIKTAHEMF-LTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQ 415

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVR 522
           F + ++L  C     ++L E +   +++
Sbjct: 416 FTYPSILRTCTSVGALDLGEQIHTQVIK 443



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 60/122 (49%)

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+  G+  +  T + +L+ C N G L   K +H  + K     +  + N LVD+Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +D    VF  M  R V S+  +I G      + + LD+FS M +  + P E++F  VL A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 436 CS 437
           CS
Sbjct: 121 CS 122


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 186/481 (38%), Positives = 294/481 (61%), Gaps = 16/481 (3%)

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK----LFHFRQH-PQAQRDLVSWTT 192
           Q+H+  +K  L  N  V   L +  A      AVH     LF   Q  P    D   + T
Sbjct: 140 QIHSLILKLGLHHNPLV---LTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNT 196

Query: 193 LIQAYVKMDYPTEAILSFFD-MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
           LI+A+ +  +     L F++ M +  + P+      VL AC+ +  L LG  +H  +   
Sbjct: 197 LIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVK- 255

Query: 252 HFNLSPDVFIHNALIDMYLKC-----GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
            F    D  + N L+ MY  C         SA+KVFDE PVK+ V+W++MI G    G  
Sbjct: 256 -FGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNS 314

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
             A+ +FR MQ  G+ PD+ T+V VL++CA++G LELGKW+ +Y+++ +I     + NAL
Sbjct: 315 ARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNAL 374

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           +DM+AKCG +D+A  VFR MK R + S+T+MIVGLA+HG+  +A+ +F EM + G++PD+
Sbjct: 375 IDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDD 434

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           V F+GVLSACSH+GLV++G  +F  M  ++++ P+ EHYGCMVD+  RAG + EAL+ ++
Sbjct: 435 VAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVR 494

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546
           +MP+ P+  +W +++ AC    +++L E V + L+R EP  +  Y+L++NIY+   RW++
Sbjct: 495 AMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEK 554

Query: 547 ALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             K+R+ M  + ++K PG +++E+  E YEF  GDKSH +  EIY++++E+  + K  GY
Sbjct: 555 KTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGY 614

Query: 607 I 607
           +
Sbjct: 615 V 615



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 180/363 (49%), Gaps = 24/363 (6%)

Query: 42  QFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS---LQNPQV--------YLYNFII 90
           Q H+ I+K G   H   +L     + S  N +   S     N Q         +L+N +I
Sbjct: 140 QIHSLILKLGL-HHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLI 198

Query: 91  QCLSNA--NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           +  +    +   A+  Y  M    + PN +T P+VLKAC     L +G  VHA  +K   
Sbjct: 199 RAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGF 258

Query: 149 LSNVYVFNTLMRLYAVC---GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
             + +V NTL+ +Y  C   G    V     F + P   +D V+W+ +I  Y +      
Sbjct: 259 EEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESP--VKDSVTWSAMIGGYARAGNSAR 316

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           A+  F +M    + PD + +V VLSAC+ LG L LG  +  YI     N+   V + NAL
Sbjct: 317 AVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERK--NIMRSVELCNAL 374

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           IDM+ KCG++  A KVF EM V+ +VSW SMI GL   G+  EA+ +F  M   G+ PDD
Sbjct: 375 IDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDD 434

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCGRIDQAFGVF 383
              + VL++C++ G ++ G +    ++ N  +    I +   +VDM ++ GR+++A    
Sbjct: 435 VAFIGVLSACSHSGLVDKGHYYFNTME-NMFSIVPKIEHYGCMVDMLSRAGRVNEALEFV 493

Query: 384 RSM 386
           R+M
Sbjct: 494 RAM 496



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 10/215 (4%)

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
            N   A+ L+REM + G+ P+  T+  VL AC    +L +G+ + +Y  +  ++ +V + 
Sbjct: 312 GNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELC 371

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ ++A CG +    K+F         R +VSWT++I          EA+L F +M +
Sbjct: 372 NALIDMFAKCGDVDRAVKVF----REMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMME 427

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT--DNHFNLSPDVFIHNALIDMYLKCG 273
             + PD +  + VLSACS  G +  G   H Y    +N F++ P +  +  ++DM  + G
Sbjct: 428 QGVDPDDVAFIGVLSACSHSGLVDKG---HYYFNTMENMFSIVPKIEHYGCMVDMLSRAG 484

Query: 274 NIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFK 307
            +  A +    MPV+ N V W S++     RG+ K
Sbjct: 485 RVNEALEFVRAMPVEPNQVIWRSIVTACHARGELK 519


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 194/523 (37%), Positives = 295/523 (56%), Gaps = 7/523 (1%)

Query: 86  YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           YN II   + ++   +A+  ++ +L  GL  +  TL   L AC   +    G+QVH  ++
Sbjct: 351 YNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAV 410

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K+  +SN+ V N ++ +Y  C  +     LF   +    +RD VSW  +I A  +     
Sbjct: 411 KSISMSNICVANAILDMYGKCKALAEASDLFDMME----RRDAVSWNAIIAACEQNGNEE 466

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           E +  F  M  + + PD      VL AC+    L+ G++IH  I  +      D F+  A
Sbjct: 467 ETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGF--DSFVGAA 524

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L+DMY KCG I  A K+ D    K +VSWN++I+G +   Q ++A   F RM  +G+ PD
Sbjct: 525 LVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPD 584

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
           +FT   VL++CAN+  + LGK +H  + K  + +D +I + LVDMY+KCG +  +  +F 
Sbjct: 585 NFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFE 644

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
               RD  ++ AM+ G A HG   +AL +F  M  V ++P+  TFV VL AC+H GLV++
Sbjct: 645 KAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDK 704

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G  +F  M   Y L PQ+EHY CMVD+ GR+G I EAL+L++ MP   DA +W  LL  C
Sbjct: 705 GLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVC 764

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           KIH  VE+AE     L++ +P+   A +L++NIY+    W    ++RK M+  K+KK PG
Sbjct: 765 KIHGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPG 824

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           CS +E+  E + F  GDK HP+  EIY+ L  ++ + ++ GYI
Sbjct: 825 CSWIELKDEVHAFLVGDKGHPRDEEIYEKLGVLIGEMQSVGYI 867



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 142/505 (28%), Positives = 235/505 (46%), Gaps = 46/505 (9%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLY---------------- 162
           T  ++ + C +  SL  G+Q HA  +        +V N LM++Y                
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110

Query: 163 ---------------AVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
                          A CG +    K F+       +RD+VSW ++I  +++     ++I
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFY----EMPERDVVSWNSVISGFLQNGECRKSI 166

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F +M +  +  D   L +VL AC  L +  +G+++H  +    F    DV   +AL+ 
Sbjct: 167 DVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVV--KFGFDCDVVTGSALLG 224

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY KC  +  +  VF E+P KN VSW++MIAG     +  E L++F+ MQG+G+      
Sbjct: 225 MYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSI 284

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
              +  SCA +  L LGK +H++  K+   +D  +G A +DMYAKCGR+  A  V  SM 
Sbjct: 285 YASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMP 344

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC-SHAGLVEEGC 446
              + SY A+IVG A   + ++AL  F  + + G+  DE+T  G L+AC S  G +E   
Sbjct: 345 KCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQ 404

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
            H L +  +        +   ++D++G+   + EA DL   M    DA  W A++ AC+ 
Sbjct: 405 VHGLAVKSISMSNICVAN--AILDMYGKCKALAEASDLFDMMER-RDAVSWNAIIAACEQ 461

Query: 507 HAKVE--LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV--KKT 562
           +   E  LA        R EP+ D  Y  +    + +      +++  ++ +  +     
Sbjct: 462 NGNEEETLAHFASMIHSRMEPD-DFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSF 520

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKT 587
            G +LV++Y +     K DK H +T
Sbjct: 521 VGAALVDMYCKCGMIEKADKIHDRT 545



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 183/360 (50%), Gaps = 14/360 (3%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K  +L+  +++ ++  +   V     I  C  N N  E +A +  M+   + P+ +T
Sbjct: 427 MYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFT 486

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
              VLKAC   Q+L  G ++H   +K+ +  + +V   L+ +Y  CG+I+   K+ H R 
Sbjct: 487 YGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKI-HDRT 545

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
               Q+ +VSW  +I  +  +    +A   F  M +  + PD      VL  C+ L  + 
Sbjct: 546 E---QKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVG 602

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           LG +IH  I      L  DV+I + L+DMY KCGN+  ++ +F++ P ++ V+WN+M+ G
Sbjct: 603 LGKQIHAQIIKQE--LQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCG 660

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINT 358
             H G  +EAL +F  MQ + +KP+  T V VL +CA++G ++ G  +    L +  ++ 
Sbjct: 661 YAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDP 720

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG------KAWKAL 411
                + +VD+  + GRID+A  + + M    D   +  ++    IHG      KA +AL
Sbjct: 721 QSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRAL 780


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 191/496 (38%), Positives = 289/496 (58%), Gaps = 6/496 (1%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           G  P+  TL  VL AC  +Q+L   ++VHA++++      V V   ++ +Y  CG + + 
Sbjct: 322 GERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSA 381

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
            K+F   Q     R+ VSW  +I+ Y +    TEA+  F  M    +    + ++  L A
Sbjct: 382 RKVFDGMQ----DRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHA 437

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           C +LG L  G ++H  +      L  +V + NALI MY KC     A +VFDE+  K  V
Sbjct: 438 CGELGFLDEGRRVHELLV--RIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRV 495

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           SWN+MI G T  G  ++A+ +F RMQ   +KPD FTLV ++ + A+I      +W+H Y 
Sbjct: 496 SWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYS 555

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            + H++ D ++  AL+DMYAKCGR+  A  +F S + R V ++ AMI G   HG    A+
Sbjct: 556 IRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAV 615

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
           ++F EM   G  P+E TF+ VLSACSHAGLV+EG ++F  M   Y L+P  EHYG MVDL
Sbjct: 616 ELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDL 675

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
            GRAG + EA   I+ MP+ P   V+GA+LGACK+H  VELAE   + +   EPE    +
Sbjct: 676 LGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYH 735

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           +L+ NIY++ + WK+  ++R  M+++ ++KTPG S+V++  E + F  G  +H +  +IY
Sbjct: 736 VLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIY 795

Query: 592 KLLDEIMHQSKNHGYI 607
             L +++ + K  GY+
Sbjct: 796 ARLAKLIEEIKAVGYV 811



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 161/325 (49%), Gaps = 7/325 (2%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           G  P   T   +LK C     L  G+ VHA      L         L  +YA C      
Sbjct: 220 GSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDA 279

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLS 230
            ++F   + P   RD V+W  L+  Y +      A+     M + +  RPD + LV VL 
Sbjct: 280 RRVFD--RMP--ARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLP 335

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           AC+    L    ++H +     F+    V +  A++D+Y KCG + SARKVFD M  +N 
Sbjct: 336 ACADAQALGACREVHAFAVRGGFD--EQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNS 393

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           VSWN+MI G    G   EAL +F+RM G G+   D +++  L++C  +G+L+ G+ VH  
Sbjct: 394 VSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHEL 453

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           L +  + ++  + NAL+ MY KC R D A  VF  +  +   S+ AMI+G   +G +  A
Sbjct: 454 LVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDA 513

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSA 435
           + +FS M    ++PD  T V ++ A
Sbjct: 514 VRLFSRMQLENVKPDSFTLVSIIPA 538



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 206/418 (49%), Gaps = 21/418 (5%)

Query: 22  LSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQH---QTQIL--YDKIISLSRGNEIENL 76
           ++L+   P    ++++G  ++ HAF ++ G  +     T IL  Y K  ++    ++ + 
Sbjct: 328 VTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFD- 386

Query: 77  SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
            +Q+     +N +I+  + N +  EA+AL++ M+ +G+     ++   L AC +   L  
Sbjct: 387 GMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDE 446

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G++VH   ++  L SNV V N L+ +Y  C       ++F         +  VSW  +I 
Sbjct: 447 GRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVF----DELGYKTRVSWNAMIL 502

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
              +     +A+  F  M   N++PD   LV ++ A + + D      IH Y    H  L
Sbjct: 503 GCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLH--L 560

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             DV++  ALIDMY KCG +  AR +F+    ++V++WN+MI G    G  K A+++F  
Sbjct: 561 DQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEE 620

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCG 374
           M+  G  P++ T + VL++C++ G ++ G+   + + +++    G      +VD+  + G
Sbjct: 621 MKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAG 680

Query: 375 RIDQAFGVFRSMKCRDVYS-YTAMIVGLAIHGKAWKALDIFSEMSQ--VGIEPDEVTF 429
           ++ +A+   + M      S Y AM+    +H    K +++  E +Q    +EP+E  +
Sbjct: 681 KLHEAWSFIQKMPMEPGISVYGAMLGACKLH----KNVELAEESAQRIFELEPEEGVY 734



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +L  C+   DL+ G  +H  +      LSP+     AL +MY KC     AR+VFD MP 
Sbjct: 231 LLKLCAARADLATGRAVHAQLAAR--GLSPEALAATALANMYAKCRRPGDARRVFDRMPA 288

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKW 346
           ++ V+WN+++AG    G  + A+ +  RMQ   G +PD  TLV VL +CA+   L   + 
Sbjct: 289 RDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACRE 348

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           VH +  +   +    +  A++D+Y KCG +D A  VF  M+ R+  S+ AMI G A +G 
Sbjct: 349 VHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGD 408

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
           A +AL +F  M   G++  +V+ +  L AC   G ++EG
Sbjct: 409 ATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEG 447



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 3/188 (1%)

Query: 303 RGQFKEALDIFRRMQ-GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
           R   + AL  F  M    G  P   T   +L  CA    L  G+ VH  L    ++ +  
Sbjct: 202 RSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEAL 261

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV- 420
              AL +MYAKC R   A  VF  M  RD  ++ A++ G A +G A  A+ +   M +  
Sbjct: 262 AATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEED 321

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
           G  PD VT V VL AC+ A  +   C+     +       Q      ++D++ + G +  
Sbjct: 322 GERPDAVTLVSVLPACADAQAL-GACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDS 380

Query: 481 ALDLIKSM 488
           A  +   M
Sbjct: 381 ARKVFDGM 388


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 188/507 (37%), Positives = 290/507 (57%), Gaps = 6/507 (1%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+ L   M  +G  P++ T+  +L A   ++ LR+G  VH Y ++    S V V   L+ 
Sbjct: 115 ALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVD 174

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y+ CG +     +F    H    R +VSW ++I  YV+      A+L F  M    ++P
Sbjct: 175 MYSKCGSVSIARVIFDGMDH----RTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQP 230

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
             + ++  L AC+ LGDL  G  +H+ +  +   L  DV + N+LI MY KC  +  A  
Sbjct: 231 TNVTVMGALHACADLGDLERGKFVHKLV--DQLKLDSDVSVMNSLISMYSKCKRVDIAAD 288

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           +F  +  K +VSWN+MI G    G   EAL+ F  MQ   +KPD FT+V V+ + A +  
Sbjct: 289 IFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSI 348

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
               KW+H  + +  ++ + F+  ALVDMYAKCG I  A  +F  M  R V ++ AMI G
Sbjct: 349 PRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDG 408

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
              HG    ++++F EM +  I+P+++TF+  LSACSH+GLVEEG   F  M + Y ++P
Sbjct: 409 YGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEP 468

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
             +HYG MVDL GRAG + +A D I+ MP+ P   V+GA+LGACKIH  V+L E     +
Sbjct: 469 TMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEI 528

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
            +  P+  G ++L+ NIY++ + W +  K+R  M++  ++KTPGCSLVE+  E + F  G
Sbjct: 529 FKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSG 588

Query: 581 DKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             SHP++ +IY  L+ ++ + +  GY+
Sbjct: 589 TTSHPQSKKIYSYLETLVDEIRAAGYV 615



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 149/535 (27%), Positives = 254/535 (47%), Gaps = 57/535 (10%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
            A++ +  M    + P  Y   Y+LK C  +  L+ G+++H   + +    N++    ++
Sbjct: 13  SALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVV 72

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA C  I   + +F        +RDLV W T+I  Y +  +   A++    M +   R
Sbjct: 73  NMYAKCRQINDAYNMFD----RMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHR 128

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + +V +L A +    L +G+ +H Y+    F     V +  AL+DMY KCG++  AR
Sbjct: 129 PDSITIVSILPAVADTRLLRIGMAVHGYVLRAGF--ESLVNVSTALVDMYSKCGSVSIAR 186

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +FD M  + VVSWNSMI G    G  + A+ IF++M   G++P + T++  L++CA++G
Sbjct: 187 VIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLG 246

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            LE GK+VH  +D+  +++D  + N+L+ MY+KC R+D A  +F++++ + + S+ AMI+
Sbjct: 247 DLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMIL 306

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-------CKHFLDM 452
           G A +G   +AL+ F EM    I+PD  T V V+ A +   +  +         + FLD 
Sbjct: 307 GYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLD- 365

Query: 453 SRVYNLQPQTEHYG------------------------CMVDLFGRAGLIREALDLIKSM 488
             V+ +    + Y                          M+D +G  GL + +++L K M
Sbjct: 366 KNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEM 425

Query: 489 ---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVR---FEPEGDGAYILMTNIYSSKN 542
               + P+   +   L AC     VE      E++ +    EP  D  Y  M ++     
Sbjct: 426 KKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMD-HYGAMVDLLGRAG 484

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE----FRKGDKSHPKTLEIYKL 593
           R  +A    +KM  +     PG   + VYG         +  D       EI+KL
Sbjct: 485 RLNQAWDFIQKMPIK-----PG---ITVYGAMLGACKIHKNVDLGEKAAFEIFKL 531



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 145/296 (48%), Gaps = 3/296 (1%)

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           +++ Y K      A+  F  M   ++RP       +L  C    DL  G +IH  +  + 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           F  S ++F    +++MY KC  I  A  +FD MP +++V WN+MI+G    G  K AL +
Sbjct: 61  F--SWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALML 118

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
             RM   G +PD  T+V +L + A+   L +G  VH Y+ +    +   +  ALVDMY+K
Sbjct: 119 VLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 178

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           CG +  A  +F  M  R V S+ +MI G    G A  A+ IF +M   G++P  VT +G 
Sbjct: 179 CGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGA 238

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
           L AC+  G +E G K    +     L         ++ ++ +   +  A D+ K++
Sbjct: 239 LHACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNL 293



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 154/338 (45%), Gaps = 38/338 (11%)

Query: 77  SLQNPQVYLYN-FIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           +L+N  +  +N  I+    N    EA+  + EM  + + P+++T+  V+ A  +    R 
Sbjct: 292 NLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQ 351

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            + +H   ++  L  NV+V   L+ +YA CG I    KLF         R +++W  +I 
Sbjct: 352 AKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMN----ARHVITWNAMID 407

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            Y        ++  F +M +  ++P+ +  +  LSACS  G +  G+     +  + + +
Sbjct: 408 GYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKD-YGI 466

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLT-HR----GQFKEA 309
            P +  + A++D+  + G +  A     +MP+K  +  + +M+     H+    G+ K A
Sbjct: 467 EPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGE-KAA 525

Query: 310 LDIFRRMQGLGLKPDD---FTLVCVLNSCANIGWLELGKWVHTYLDKNHIN-TDGF---- 361
            +IF+      L PDD     L+  + + A++ W ++ K V T ++K+ +  T G     
Sbjct: 526 FEIFK------LNPDDGGYHVLLANIYATASM-WGKVAK-VRTIMEKSGLQKTPGCSLVE 577

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
           IGN +   Y+         G     + + +YSY   +V
Sbjct: 578 IGNEVHSFYS---------GTTSHPQSKKIYSYLETLV 606


>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Brachypodium distachyon]
          Length = 527

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 194/519 (37%), Positives = 306/519 (58%), Gaps = 40/519 (7%)

Query: 87  NFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           N +I+ L+        +A+Y ++  +GL+ +++T P+VL+A    +    G++ HA +MK
Sbjct: 15  NLLIRTLARRGSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEGRKAHAAAMK 74

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
           T    + Y  ++LM +Y + G      KLF    H    R LV W  +I+ YV+    T 
Sbjct: 75  TGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPH----RALVVWNMMIRCYVRCGRYTA 130

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           AI    +M ++ L PD + LV  ++ CS+ GDLSLG +IH Y+ D  F  S  + + NAL
Sbjct: 131 AIALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYM-DGVFGFS--LPVANAL 187

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ-------------------- 305
           +DMY+K G +  A K+F++MP +N++SW  +++G    GQ                    
Sbjct: 188 LDMYMKNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWT 247

Query: 306 -----------FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
                      F+EAL +FR MQ   ++PD FT+V +L  CAN+G L+ G+W+H +    
Sbjct: 248 AMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDR 307

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            +  D  +G AL+DMYAKCG + ++  VF  M+ RD  ++T++I GLA +G+A +AL++F
Sbjct: 308 KMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELF 367

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            +M +  ++PD +TF+GVLSAC H GLV+EG K F  M  VY + P+ EHY C+V+L GR
Sbjct: 368 EDMERSKVKPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRIPPRIEHYSCLVNLLGR 427

Query: 475 AGLIREALDLIKSMPLVPDAF-VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
           AGL+ EA  LI+ + +  DA  ++GALL ACK    VE++E + + +     +     +L
Sbjct: 428 AGLLDEAEKLIRDIQINKDAMPLFGALLTACKAQGNVEMSERLTKRIGEQGYQIPDVNLL 487

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           M+N+Y++ +RW++A+++R KM    +KKT GCSL+EV G
Sbjct: 488 MSNVYATASRWEDAIRVRSKMAHPTIKKTAGCSLIEVKG 526


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 189/491 (38%), Positives = 291/491 (59%), Gaps = 19/491 (3%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQ---------VHAYSMKTALLSNVYVFNTLMRLYAVC 165
           PN+ + P  LK+  Q Q + + Q+         +HA  ++     + ++   L+R  + C
Sbjct: 18  PNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKC 77

Query: 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
             I    ++F +  +P    ++  +T LI  +V      +AI  +  M   ++ PD  ++
Sbjct: 78  HAIDYASRIFQYTHNP----NVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLM 133

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
             +L AC     L  G ++H         LS +  +   ++++Y KCG +  AR+VF+EM
Sbjct: 134 ASILKACGSQLALREGREVHSRALK--LGLSSNRLVRLRIMELYGKCGELGDARRVFEEM 191

Query: 286 P----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           P     K+ V W +MI G     +   AL+ FR MQG  ++P++FT+VCVL++C+ +G L
Sbjct: 192 PEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGAL 251

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
           E+G+WVH+Y+ K  I  + F+GNAL++MY++CG ID+A  VF  MK RDV +Y  MI GL
Sbjct: 252 EIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGL 311

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
           +++GK+ +A+++F  M    + P  VTFVGVL+ACSH GLV+ G K F  M+R Y ++PQ
Sbjct: 312 SMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQ 371

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
            EHYGCMVDL GR G + EA DLI++M + PD  + G LL ACK+H  +EL E V + L 
Sbjct: 372 IEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLE 431

Query: 522 RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581
                  G Y+L++++Y+S  +WKEA ++R KMKE  ++K PGCS +EV  E +EF  GD
Sbjct: 432 DRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGD 491

Query: 582 KSHPKTLEIYK 592
             HP+   IY+
Sbjct: 492 LRHPRKERIYE 502



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 210/364 (57%), Gaps = 10/364 (2%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS-----LQNPQVYL 85
           L+ SK + Q+   HA +I+ G  Q    ++++ + S S+ + I+  S       NP VYL
Sbjct: 39  LQRSKHINQVLPIHAQLIRNGHSQ-DPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYL 97

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           Y  +I   +S+ N  +AI LY  ML   +LP+ Y +  +LKAC    +LR G++VH+ ++
Sbjct: 98  YTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRAL 157

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K  L SN  V   +M LY  CG +    ++F         +D V WT +I  +V+ +   
Sbjct: 158 KLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMN 217

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A+ +F  M   N+RP+   +V VLSACS+LG L +G  +H Y+    F +  ++F+ NA
Sbjct: 218 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYM--RKFEIELNLFVGNA 275

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LI+MY +CG+I  A+ VFDEM  ++V+++N+MI+GL+  G+ ++A+++FR M G  L+P 
Sbjct: 276 LINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPT 335

Query: 325 DFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           + T V VLN+C++ G ++ G K  H+      +         +VD+  + GR+++A+ + 
Sbjct: 336 NVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLI 395

Query: 384 RSMK 387
           R+MK
Sbjct: 396 RTMK 399


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 188/491 (38%), Positives = 290/491 (59%), Gaps = 19/491 (3%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQ---------VHAYSMKTALLSNVYVFNTLMRLYAVC 165
           PN+ + P  LK+  Q Q + + Q+         +HA  ++     + ++   L+R  + C
Sbjct: 25  PNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKC 84

Query: 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
             I    ++F +  +P    ++  +T LI  +V      EAI  +  M   ++ PD  ++
Sbjct: 85  HAIDYASRIFQYTHNP----NVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLM 140

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
             +L AC     L  G ++H          S +  +   ++++Y KCG +  AR+VF+EM
Sbjct: 141 ASILKACGSQLALREGREVHSRALK--LGFSSNRLVRLRIMELYGKCGELGDARRVFEEM 198

Query: 286 P----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           P     K+ V W +MI G     +   AL+ FR MQG  ++P++FT+VCVL++C+ +G L
Sbjct: 199 PEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGAL 258

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
           E+G+WVH+Y+ K  I  + F+GNAL++MY++CG ID+A  VF  MK RDV +Y  MI GL
Sbjct: 259 EIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGL 318

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
           +++GK+ +A+++F  M    + P  VTFVGVL+ACSH GLV+ G + F  M+R Y ++PQ
Sbjct: 319 SMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQ 378

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
            EHYGCMVDL GR G + EA DLI++M + PD  + G LL ACK+H  +EL E V + L 
Sbjct: 379 IEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELE 438

Query: 522 RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581
                  G Y+L++++Y+S  +WKEA ++R KMKE  ++K PGCS +EV  E +EF  GD
Sbjct: 439 DRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGD 498

Query: 582 KSHPKTLEIYK 592
             HP+   IY+
Sbjct: 499 LRHPQKERIYE 509



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 211/364 (57%), Gaps = 10/364 (2%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS-----LQNPQVYL 85
           L+ S+ + Q+   HA +I+ G  Q    ++++ + S S+ + I+  S       NP VYL
Sbjct: 46  LQRSRHINQVLPIHAQLIRNGHSQ-DPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYL 104

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           Y  +I   +S+ N LEAI LY  ML + +LP+ Y +  +LKAC    +LR G++VH+ ++
Sbjct: 105 YTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRAL 164

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K    SN  V   +M LY  CG +    ++F         +D V WT +I  +V+ +   
Sbjct: 165 KLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETN 224

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A+ +F  M   N+RP+   +V VLSACS+LG L +G  +H Y+    F +  ++F+ NA
Sbjct: 225 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYM--RKFEIELNLFVGNA 282

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LI+MY +CG+I  A+ VFDEM  ++V+++N+MI+GL+  G+ ++A+++FR M G  L+P 
Sbjct: 283 LINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPT 342

Query: 325 DFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           + T V VLN+C++ G ++ G +  H+      +         +VD+  + GR+++A+ + 
Sbjct: 343 NVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLI 402

Query: 384 RSMK 387
           R+MK
Sbjct: 403 RTMK 406


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 207/591 (35%), Positives = 320/591 (54%), Gaps = 11/591 (1%)

Query: 21   QLSLLHQSPRLESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENL-- 76
            +++ LH      +S +    K  H  I+++G  S  H    L +         E +N+  
Sbjct: 486  RVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFE 545

Query: 77   SLQNPQVYLYNFIIQCLSNANPLEAI-ALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
              +   +  +N +I   +     EA   L+ EM  +GL P+  T   VL  C   ++L +
Sbjct: 546  GTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALEL 605

Query: 136  GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            G+Q+H   +++ L  +V + N L+ +Y  CG ++  +++FH  +H    R+++SWT +I 
Sbjct: 606  GRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRH----RNVMSWTAMIG 661

Query: 196  AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
             +       +A   F+ M     +P       +L AC     L  G K+  +I ++ + L
Sbjct: 662  GFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYEL 721

Query: 256  SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
              D  + NALI  Y K G++  ARKVFD+MP ++++SWN MIAG    G    AL    +
Sbjct: 722  --DTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQ 779

Query: 316  MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
            MQ  G+  + F+ V +LN+C++   LE GK VH  + K  +  D  +G AL+ MYAKCG 
Sbjct: 780  MQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGS 839

Query: 376  IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
            +++A  VF +   ++V ++ AMI   A HG A KALD F+ M + GI+PD  TF  +LSA
Sbjct: 840  LEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSA 899

Query: 436  CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
            C+H+GLV EG + F  +   + L P  EHYGC+V L GRAG  +EA  LI  MP  PDA 
Sbjct: 900  CNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAA 959

Query: 496  VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
            VW  LLGAC+IH  V LAE    N ++        Y+L++N+Y++  RW +  K+R+ M+
Sbjct: 960  VWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVME 1019

Query: 556  ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             R ++K PG S +EV    +EF   D+SHP+T EIY+ L  +  + +  GY
Sbjct: 1020 GRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGY 1070



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 142/475 (29%), Positives = 246/475 (51%), Gaps = 27/475 (5%)

Query: 41  KQFHAFIIKTG---SPQHQTQIL--YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           K+ H+ II+ G    P+ Q  +L  Y K   L    ++ +  +    V  YN ++   + 
Sbjct: 203 KKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFS-GIYRRDVVSYNTMLGLYAQ 261

Query: 96  -ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
            A   E I L+ +M  +G+ P+  T   +L A      L  G+++H  ++   L S++ V
Sbjct: 262 KAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRV 321

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
              L  ++  CG +    +         A RD+V +  LI A  +  +  EA   ++ M 
Sbjct: 322 GTALATMFVRCGDVAGAKQALE----AFADRDVVVYNALIAALAQHGHYEEAFEQYYQM- 376

Query: 215 QANLRPDGMIL-----VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
               R DG+++     + VL+ACS    L  G  IH +I++     S DV I N+LI MY
Sbjct: 377 ----RSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISE--VGHSSDVQIGNSLISMY 430

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            +CG++P AR++F+ MP ++++SWN++IAG   R    EA+ ++++MQ  G+KP   T +
Sbjct: 431 ARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFL 490

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            +L++C N      GK +H  + ++ I ++G + NAL++MY +CG I +A  VF   + R
Sbjct: 491 HLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRAR 550

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-H 448
           D+ S+ +MI G A HG    A  +F EM + G+EPD++TF  VL  C +   +E G + H
Sbjct: 551 DIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIH 610

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
            L +     LQ        +++++ R G +++A ++  S+    +   W A++G 
Sbjct: 611 MLIIES--GLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRH-RNVMSWTAMIGG 662



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/516 (25%), Positives = 256/516 (49%), Gaps = 20/516 (3%)

Query: 5   LTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG-SPQ-HQTQILYD 62
           L+ A   R  + N    + L+    R    +S+ + K+ HA +++ G  P    + +L +
Sbjct: 69  LSNAYQPRPTETNRAAYVDLVQNCTR---KRSLAEAKRIHAQMVEAGVGPDIFLSNLLIN 125

Query: 63  KIISLSRGNEIENLSLQNPQ--VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYT 119
             +     ++   + L+ P+  V  +N +I C +      +A  L+ EM   G +P+  T
Sbjct: 126 MYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKIT 185

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--F 177
              +L AC     L  G+++H+  ++     +  V N+L+ +Y  C  + +  ++F   +
Sbjct: 186 YISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIY 245

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
           R      RD+VS+ T++  Y +  Y  E I  F  M    + PD +  + +L A +    
Sbjct: 246 R------RDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSM 299

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L  G +IH+   +   N   D+ +  AL  M+++CG++  A++  +    ++VV +N++I
Sbjct: 300 LDEGKRIHKLAVNEGLN--SDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALI 357

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
           A L   G ++EA + + +M+  G+  +  T + VLN+C+    L  G+ +H+++ +   +
Sbjct: 358 AALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHS 417

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
           +D  IGN+L+ MYA+CG + +A  +F +M  RD+ S+ A+I G A      +A+ ++ +M
Sbjct: 418 SDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQM 477

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
              G++P  VTF+ +LSAC+++    +G     D+ R   ++        +++++ R G 
Sbjct: 478 QSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKSNGHLANALMNMYRRCGS 536

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           I EA ++ +      D   W +++     H   E A
Sbjct: 537 IMEAQNVFEGTR-ARDIISWNSMIAGHAQHGSYEAA 571


>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
 gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 215/586 (36%), Positives = 322/586 (54%), Gaps = 51/586 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQ---TQILYDKIISLSRGNEIENL-----SLQNPQ 82
           +ES  S+ QLKQ  A + KT    H    +++L     +LS   +I +       LQNP 
Sbjct: 57  MESCTSMLQLKQIQAHMTKTALISHTFPVSRVL--AFCALSDSGDINHAHLLFSQLQNPN 114

Query: 83  VYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
            Y++N +I+  S A   +     + +M+ KG+  +  +  + LKAC Q   +  G+ VH 
Sbjct: 115 TYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSVHC 174

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
              K   +  + V N L+  Y + G +     +F       ++RD+VSWT++I  Y K  
Sbjct: 175 VVWKMGFVYTLLVQNGLVHFYGLRGCLGLARLVFD----EISERDVVSWTSMIDGYSKHK 230

Query: 202 YPTEAILSFFDMCQANL-RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           +  EA+  F  M    +  P+ + ++ VLS+CS+ GDL LG     Y+     N++  + 
Sbjct: 231 WCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKTR--NVTRSLN 288

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           + NA++DMY+KCG + SAR++FD M                                G  
Sbjct: 289 LMNAILDMYVKCGCLDSAREIFDTM--------------------------------GAA 316

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVH-TYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
             P + TL CVL  C  +G L++G+W+H  Y+   +      + NAL+DMYAKCG I +A
Sbjct: 317 FAPMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEA 376

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             VF  M  R++ S+ +MI   A HG A +AL +F  M   G +PD++T VGVLSACSH 
Sbjct: 377 AKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLSACSHG 436

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLV EG ++F +M R Y ++P+ EHY CM+DL GR GL+ +A +LI  MP+ P A  WGA
Sbjct: 437 GLVAEGQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLEDAYELITKMPMEPSAAAWGA 496

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           L+ AC++H  VE+A+I    L+  +PE  G Y+L+ NI +S  RW +    R+ M+ER+V
Sbjct: 497 LVHACRMHGNVEVAKIAAPRLLELDPEDSGIYVLLANICASGRRWGDVKMARRMMRERRV 556

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           KK PG S+VEV G+F+EF  GD+SHP++  IY  LD++   SK  G
Sbjct: 557 KKIPGRSIVEVEGQFHEFLAGDESHPQSEGIYNALDQLFAMSKLEG 602


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 188/473 (39%), Positives = 295/473 (62%), Gaps = 8/473 (1%)

Query: 137 QQVHAYSMKTAL-LSNVYVFNTLM-RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
           +Q+HA+S++  + L+N  +   L+  + ++   +   + +F    +P    ++ +W T+I
Sbjct: 35  KQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNP----NVFTWNTII 90

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
           + Y + D P+ A L +  M  + + PD      +L A SK  ++  G  IH     N F 
Sbjct: 91  RGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFE 150

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
               VF+ N+L+ +Y  CG+  SA KVF+ M  +++V+WNSMI G    G+  EAL +FR
Sbjct: 151 --SLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFR 208

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            M   G++PD FT+V +L++ A +G LELG+ VH YL K  ++ +  + N+L+D+YAKCG
Sbjct: 209 EMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCG 268

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            I +A  VF  M  R+  S+T++IVGLA++G   +AL++F EM   G+ P E+TFVGVL 
Sbjct: 269 AIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLY 328

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           ACSH G+++EG ++F  M     + P+ EHYGCMVDL  RAGL+++A + I++MP+ P+A
Sbjct: 329 ACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNA 388

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            +W  LLGAC IH  + L EI   +L+  EP+  G Y+L++N+Y+S+ RW +   +R+ M
Sbjct: 389 VIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSM 448

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +  VKKTPG SLVE+    YEF  GD+SHP++ ++Y LL++I    K  GY+
Sbjct: 449 LKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYV 501



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 139/444 (31%), Positives = 227/444 (51%), Gaps = 67/444 (15%)

Query: 34  SKSVGQLKQFHAFIIKTG----SPQHQTQILYDKIISLSRGNEIEN---LSLQNPQVYLY 86
           + S  +LKQ HAF I+ G    +P     +++  I+SLS            + NP V+ +
Sbjct: 28  ASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIF-TIVSLSAPMSYAYNVFTVIHNPNVFTW 86

Query: 87  NFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           N II+  + + NP  A   YR+M++  + P+T+T P++LKA  +S ++R G+ +H+ +++
Sbjct: 87  NTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIR 146

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
               S V+V N+L+ +YA CG  ++ +K+F   +    +RDLV+W ++I  +     P E
Sbjct: 147 NGFESLVFVQNSLLHIYAACGDTESAYKVFELMK----ERDLVAWNSMINGFALNGRPNE 202

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           A+  F +M    + PDG  +V +LSA ++LG L LG ++H Y+      LS +  + N+L
Sbjct: 203 ALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLK--VGLSKNSHVTNSL 260

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           +D+Y KCG I  A++VF EM  +N VSW S+I GL   G  +EAL++F+ M+G GL P +
Sbjct: 261 LDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSE 320

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
            T V VL +C++                                   CG +D+ F  FR 
Sbjct: 321 ITFVGVLYACSH-----------------------------------CGMLDEGFEYFRR 345

Query: 386 MK-----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS--- 437
           MK        +  Y  M+  L+  G   +A +    M    ++P+ V +  +L AC+   
Sbjct: 346 MKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMP---VQPNAVIWRTLLGACTIHG 402

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQ 461
           H GL E    H L      NL+P+
Sbjct: 403 HLGLGEIARSHLL------NLEPK 420


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 203/585 (34%), Positives = 329/585 (56%), Gaps = 16/585 (2%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEIENLSLQNPQV---- 83
           S +S+   ++ H  ++K+G    +  +     +Y K  S+     I N  L    V    
Sbjct: 223 SLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNA 282

Query: 84  YLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
            ++N +I   +SN    +A+ L+ +M++ G+ P+  T+  +   C +S  +  G+Q+H  
Sbjct: 283 VIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGL 342

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
             K  L +N+ V   L+ +Y  CG +    K+F   Q+     +L+ W+ +I    +   
Sbjct: 343 IFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQN----HNLIMWSAVISNCAQSGC 398

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
           PT+A+  F++    +   D  ILV VL ACS L     G++IH   T   F    DVF+ 
Sbjct: 399 PTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGF--VSDVFVG 456

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           +AL+D+Y KC ++  ++KVF  +  K++VSWN++I+G        EAL  FR MQ   ++
Sbjct: 457 SALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIR 516

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P+  T+ C+L+ CA++  + L K VH YL +  + +   + N+L+  YAKCG I+ +   
Sbjct: 517 PNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYT 576

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F  M  R+  S+ ++I+G+ +H +  + + +F +M   GI+PD VTF  +LSACSHAG V
Sbjct: 577 FEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRV 636

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           +EGCK+F  M   +NL+PQ E Y CMVDL GRAG + +A DLI +MP  PD  +WG+LLG
Sbjct: 637 DEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLG 696

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           +CK H    LAEIV  ++ +  P   G  +L+ N+Y +  + +E  K+R ++K+  +KK 
Sbjct: 697 SCKNHGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLGKGREGSKVRSEIKDMGLKKK 756

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           PGCS +EV   F+ F  GD+SH ++ EIY  ++ +  + K  GYI
Sbjct: 757 PGCSWIEVDNNFHIFIAGDRSHSQSDEIYAAVESLTTEIKRAGYI 801



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 221/462 (47%), Gaps = 11/462 (2%)

Query: 100 EAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
            ++  +R M+ + G+ PN       + +C   QSL  G+++H   +K+ L    Y+ ++L
Sbjct: 193 RSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSL 252

Query: 159 MRLYAVCGLIKAVHKLFH-FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           + +Y  CG IK    +F+        +R+ V W  +I  YV     ++A+L F  M    
Sbjct: 253 IEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWG 312

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++PD   +V + S CS+  D++ G +IH  I    F L  ++ +  AL+DMYLKCG++ +
Sbjct: 313 IKPDYSTMVSLFSLCSESLDIAFGKQIHGLIF--KFGLKNNIRVETALLDMYLKCGDMGT 370

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
             K+F      N++ W+++I+     G   +AL++F   +      D   LV VL +C++
Sbjct: 371 GLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSS 430

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +     G  +H    K    +D F+G+ALVD+YAKC  +  +  VF  +  +D+ S+ A+
Sbjct: 431 LTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNAL 490

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I G A    A +AL  F +M    I P+ VT   +LS C+H  ++   CK          
Sbjct: 491 ISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTL-CKEVHGYLIRQG 549

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           L         ++  + + G I  +L   + MP   D   W +++    +H++ +   ++ 
Sbjct: 550 LGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDV-SWNSIILGMGMHSRTDEMIVLF 608

Query: 518 ENLVRFEPEGDGAYILMTNIYSS---KNRWKEALKLRKKMKE 556
           + +V    + D  ++  T I S+     R  E  K  K M E
Sbjct: 609 DKMVASGIKPD--HVTFTAILSACSHAGRVDEGCKYFKSMVE 648



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 188/354 (53%), Gaps = 15/354 (4%)

Query: 100 EAIALYREMLIKGLLPNTYT-LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           +AI +Y +ML  G+    +   P ++KA      +  G+Q+H + +K  +L +V V N+L
Sbjct: 91  DAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSL 150

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK-MDYPTEAILSFFDMC-QA 216
           + +Y  CG+++   ++  F + P+   DLVSW T+I  + K MDY T +++ F  M  + 
Sbjct: 151 LTMYWKCGVVEDAVQM--FEKMPEV--DLVSWNTMISGFQKSMDY-TRSLMFFRSMVWEF 205

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            + P+ +  V  + +CS L  L+ G +IH  +  +   L  + ++ ++LI+MY+KCG+I 
Sbjct: 206 GIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKS--GLDVEEYLVSSLIEMYMKCGSIK 263

Query: 277 SARKVFDEMPVK-----NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           +A  +F+ +  K     N V WN MI+G    G F +AL +F +M   G+KPD  T+V +
Sbjct: 264 NAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSL 323

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
            + C+    +  GK +H  + K  +  +  +  AL+DMY KCG +     +FR  +  ++
Sbjct: 324 FSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNL 383

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
             ++A+I   A  G   KAL++F E        D    V VL ACS   L  EG
Sbjct: 384 IMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEG 437



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 157/321 (48%), Gaps = 11/321 (3%)

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM-ILVIVLSACSKLGDLSLGIKIHRYIT 249
             +I+ Y +  +  +AI  +  M    ++ +       ++ A   L D+  G +IH ++ 
Sbjct: 77  NNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVL 136

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
                +  DV + N+L+ MY KCG +  A ++F++MP  ++VSWN+MI+G      +  +
Sbjct: 137 --KLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRS 194

Query: 310 LDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           L  FR M    G+ P+    V  + SC+++  L  G+ +H  + K+ ++ + ++ ++L++
Sbjct: 195 LMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIE 254

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTA-----MIVGLAIHGKAWKALDIFSEMSQVGIE 423
           MY KCG I  A  +F S+  +D     A     MI G   +G   +AL +F +M   GI+
Sbjct: 255 MYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIK 314

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           PD  T V + S CS +  +  G K    +   + L+        ++D++ + G +   L 
Sbjct: 315 PDYSTMVSLFSLCSESLDIAFG-KQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLK 373

Query: 484 LIKSMPLVPDAFVWGALLGAC 504
           + +      +  +W A++  C
Sbjct: 374 IFRRSQ-NHNLIMWSAVISNC 393


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 203/624 (32%), Positives = 335/624 (53%), Gaps = 96/624 (15%)

Query: 78  LQNPQVYLYNFIIQC---LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
           L+NP  + +N I++    L N+ P +A+  Y+  L     P++YT P +L+ C    S  
Sbjct: 64  LRNPNTFTWNTIMRAHLYLQNS-PHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEF 122

Query: 135 VGQQVHAYSMKTALLSNVYV-------------------------------FNTLMRLYA 163
            G+Q+HA+++ +    +VYV                               +NTL+  Y 
Sbjct: 123 EGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYV 182

Query: 164 VCGLIKAVHKLFH-----------------------------FRQHPQAQRDLVSWTTLI 194
             G ++   ++F                              F      +RD+VSW+ ++
Sbjct: 183 QAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMV 242

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH--------- 245
             Y + +   EA++ F +M  + +  D +++V  LSACS++ ++ +G  +H         
Sbjct: 243 SCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVE 302

Query: 246 ----------------------RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
                                 R I D+   L  D+   N++I  YL+CG+I  A  +F 
Sbjct: 303 DYVSLKNALIHLYSSCGEIVDARRIFDDGGEL-LDLISWNSMISGYLRCGSIQDAEMLFY 361

Query: 284 EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLEL 343
            MP K+VVSW++MI+G      F EAL +F+ MQ  G++PD+  LV  +++C ++  L+L
Sbjct: 362 SMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDL 421

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           GKW+H Y+ +N +  +  +   L+DMY KCG ++ A  VF +M+ + V ++ A+I+GLA+
Sbjct: 422 GKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAM 481

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           +G   ++L++F++M + G  P+E+TF+GVL AC H GLV +G  +F  M   + ++   +
Sbjct: 482 NGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIK 541

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           HYGCMVDL GRAGL++EA +LI SMP+ PD   WGALLGAC+ H   E+ E +   L++ 
Sbjct: 542 HYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQL 601

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           +P+ DG ++L++NIY+SK  W   L++R  M +  V KTPGCS++E  G  +EF  GDK+
Sbjct: 602 QPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKT 661

Query: 584 HPKTLEIYKLLDEIMHQSKNHGYI 607
           HP+  +I  +LD +  + K  GY+
Sbjct: 662 HPQINDIEHMLDVVAAKLKIEGYV 685



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/449 (22%), Positives = 212/449 (47%), Gaps = 60/449 (13%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH---KLF 175
           TL  +L++C   +  R  +Q+ + ++ T L+++ Y  + L+   +    +   H   ++F
Sbjct: 5   TLDSLLQSC---KCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIF 61

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKM-DYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           +  ++P    +  +W T+++A++ + + P +A+L +     ++ +PD     I+L  C+ 
Sbjct: 62  NHLRNP----NTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAA 117

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
                 G ++H +   + F+   DV++ N L+++Y  CG++ SAR+VF+E PV ++VSWN
Sbjct: 118 RVSEFEGRQLHAHAVSSGFD--GDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWN 175

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           +++AG    G+ +EA  +F  M      P+  T+                          
Sbjct: 176 TLLAGYVQAGEVEEAERVFEGM------PERNTIA------------------------- 204

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALD 412
                    N+++ ++ + G +++A  +F  ++   RD+ S++AM+     +    +AL 
Sbjct: 205 --------SNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALV 256

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           +F EM   G+  DEV  V  LSACS    VE G +    ++    ++        ++ L+
Sbjct: 257 LFVEMKGSGVAVDEVVVVSALSACSRVLNVEMG-RWVHGLAVKVGVEDYVSLKNALIHLY 315

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD-GAY 531
              G I +A  +      + D   W +++        ++ AE++  ++    PE D  ++
Sbjct: 316 SSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSM----PEKDVVSW 371

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVK 560
             M + Y+    + EAL L ++M+   V+
Sbjct: 372 SAMISGYAQHECFSEALALFQEMQLHGVR 400


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 207/602 (34%), Positives = 330/602 (54%), Gaps = 54/602 (8%)

Query: 60  LYDKIISLSRGNEIENLSLQN--PQVYLYNFIIQC-LSNANPLEAIALYREM-LIKGLLP 115
           +Y +  SL   + I +   Q     V  +N I+   + ++N   A+ L+ +M LI    P
Sbjct: 206 MYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKP 265

Query: 116 -----NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK- 169
                +  ++  +L AC   +++   ++VH  +++     +V+V N L+  YA CGL++ 
Sbjct: 266 TNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMEN 325

Query: 170 ------------------------------AVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
                                         A  +LF   +      D+V+WT +I  Y +
Sbjct: 326 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQ 385

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY-------ITDNH 252
                EA+  F  M  +   P+ + ++ VLSAC+ LG  S G +IH Y         DN 
Sbjct: 386 RGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDND 445

Query: 253 FN-LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--KNVVSWNSMIAGLTHRGQFKEA 309
           F     D+ ++NALIDMY KC +  +AR +FD++P+  +NVV+W  MI G    G   +A
Sbjct: 446 FGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDA 505

Query: 310 LDIFRRM--QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI--NTDGFIGNA 365
           L +F  M  +  G+ P+ +T+ C+L +CA++  + +GK +H Y+ ++H   ++  F+ N 
Sbjct: 506 LKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANC 565

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           L+DMY+KCG +D A  VF SM  +   S+T+M+ G  +HG+  +ALDIF +M + G  PD
Sbjct: 566 LIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPD 625

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
           ++TF+ VL ACSH G+V++G  +F  MS  Y L P+ EHY C +DL  R+G + +A   +
Sbjct: 626 DITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTV 685

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
           K MP+ P A VW ALL AC++H+ VELAE  +  LV    E DG+Y L++NIY++  RWK
Sbjct: 686 KDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWK 745

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           +  ++R  MK+  +KK PGCS V+       F  GD+SHP + +IY LL+ ++ + K  G
Sbjct: 746 DVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMG 805

Query: 606 YI 607
           Y+
Sbjct: 806 YV 807



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 140/486 (28%), Positives = 225/486 (46%), Gaps = 60/486 (12%)

Query: 80  NPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           +P V+    I + +       AI +   ML  G  P+ +TLP+VLKAC +  S R G   
Sbjct: 125 SPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAF 184

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H         SNV++ N L+ +Y+ CG ++    +F      +   D++SW +++ A+VK
Sbjct: 185 HGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD-EITQRGIDDVISWNSIVSAHVK 243

Query: 200 MDYPTEAILSFFDMC------QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
                 A+  F  M         N R D + +V +L AC  L  +    ++H     N  
Sbjct: 244 SSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRN-- 301

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK------ 307
              PDVF+ NALID Y KCG + +A KVF+ M  K+VVSWN+M+AG +  G F+      
Sbjct: 302 GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELF 361

Query: 308 -----------------------------EALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
                                        EAL++FR+M   G  P+  T++ VL++CA++
Sbjct: 362 KNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASL 421

Query: 339 GWLELGKWVHTYLDKNHINT----------DGFIGNALVDMYAKCGRIDQAFGVFRS--M 386
           G    G  +H Y  KN + T          D  + NAL+DMY+KC     A  +F    +
Sbjct: 422 GAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPL 481

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEM--SQVGIEPDEVTFVGVLSACSHAGLVEE 444
           + R+V ++T MI G A +G +  AL +F EM     G+ P+  T   +L AC+H   +  
Sbjct: 482 EERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 541

Query: 445 GCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           G +    + R +  +        C++D++ + G +  A  +  SM     A  W +++  
Sbjct: 542 GKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ-KSAISWTSMMTG 600

Query: 504 CKIHAK 509
             +H +
Sbjct: 601 YGMHGR 606



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 146/341 (42%), Gaps = 18/341 (5%)

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
             ++  YL CG    A  V + +     V WN +I     +G+   A+++  RM   G +
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD FTL  VL +C  +     G   H  +  N   ++ FI NALV MY++CG +++A  +
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 219

Query: 383 FRSMKCR---DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE------PDEVTFVGVL 433
           F  +  R   DV S+ +++        AW ALD+FS+M+ +  E       D ++ V +L
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
            AC     V +  +   +  R     P       ++D + + GL+  A+ +   M    D
Sbjct: 280 PACGSLKAVPQTKEVHGNAIRNGTF-PDVFVGNALIDAYAKCGLMENAVKVFNMMEF-KD 337

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFE-PEGDGAYILMTNIYSSKNRWKEALKLRK 552
              W A++         E A  + +N+ +   P     +  +   YS +    EAL L +
Sbjct: 338 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 397

Query: 553 KMKERKVKKTPGC----SLVEVYGEFYEFRKGDKSHPKTLE 589
           +M        P C    S++        F +G + H  +L+
Sbjct: 398 QMIFS--GSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK 436


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 203/575 (35%), Positives = 323/575 (56%), Gaps = 13/575 (2%)

Query: 37  VGQLKQFHAFIIKTGSPQ-----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQ 91
           + + K+ HA +I+ G        +    +Y K   +S    + +   +  ++     I  
Sbjct: 214 IARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISG 273

Query: 92  CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
              N   LE + L+  M    + P+  T+  V  AC    + R+G+ VH Y +K+    +
Sbjct: 274 YFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGD 333

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
           + + N+L+++Y+  G ++    +F   +     +D+VSWT +I + V    P +A+ ++ 
Sbjct: 334 ISMNNSLIQMYSSLGRLEEAETVFSRME----SKDVVSWTAMIASLVSHKLPFKAVETYK 389

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            M    + PD + LV VLSAC+ +G L LGI++H         L   V + N+LIDMY K
Sbjct: 390 MMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT--GLVSHVIVSNSLIDMYSK 447

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           C  + +A +VF  +  KNVVSW S+I GL    +  EAL  FR+M+   +KP+  TL+ V
Sbjct: 448 CKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISV 506

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L++CA IG L  GK +H +  +  +  DGF+ NA++DMY +CGR   A   F S K +DV
Sbjct: 507 LSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDV 565

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            ++  ++ G A  G+A  A+++F +M ++ I PDE+TF+ +L ACS +G+V EG ++F  
Sbjct: 566 TAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNI 625

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           M   YNL P  +HY C+VD+ GRAG + +A D I+ MP+ PDA +WGALL AC+IH  VE
Sbjct: 626 MKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVE 685

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           L EI  + +   + +  G YIL+ N+Y+    W +  K+R  M+ER +   PGCS VE+ 
Sbjct: 686 LGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIK 745

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           G+ + F  GD SH ++ EI  +LD    + K +G+
Sbjct: 746 GKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGF 780



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 239/457 (52%), Gaps = 21/457 (4%)

Query: 78  LQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +    V+ +N ++   + A    EA+ LY  ML   + PN YT P VLK C     +  G
Sbjct: 158 MSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARG 217

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +++HA+ ++    S+V V N L+ +Y  CG I     LF        +RD +SW  +I  
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF----DKMPKRDRISWNAMISG 273

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y +     E +  F  M + ++ PD + +  V SAC  L +  LG  +H Y+  + F   
Sbjct: 274 YFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEF--G 331

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL-THRGQFKEALDIFRR 315
            D+ ++N+LI MY   G +  A  VF  M  K+VVSW +MIA L +H+  FK A++ ++ 
Sbjct: 332 GDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFK-AVETYKM 390

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+  G+ PD+ TLV VL++CA IG L+LG  +H    K  + +   + N+L+DMY+KC  
Sbjct: 391 MELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKC 450

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +D A  VFR++  ++V S+T++I+GL I+ ++++AL  F +M +  ++P+ VT + VLSA
Sbjct: 451 VDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSA 509

Query: 436 CSHAGLVEEGCK---HFLDMSRVYN-LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           C+  G +  G +   H L     ++   P       ++D++ R G    AL+   S    
Sbjct: 510 CARIGALMRGKEIHAHALRTGVGFDGFLPNA-----ILDMYVRCGRKVPALNQFNSQK-- 562

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
            D   W  LL       + +LA  + + ++  E   D
Sbjct: 563 KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPD 599



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 193/366 (52%), Gaps = 18/366 (4%)

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +  ALLS    F  L+  + V G                ++RD+ SW  L+  Y K    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFG--------------KMSERDVFSWNVLVGGYAKAGCF 179

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EA+  +  M  A +RP+      VL  C+ + D++ G +IH ++    F    DV + N
Sbjct: 180 DEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVI--RFGFESDVDVGN 237

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           ALI MY+KCG+I +AR +FD+MP ++ +SWN+MI+G    G   E L++F  M+ L + P
Sbjct: 238 ALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDP 297

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  T+  V ++C  +    LG+ VH Y+ K+    D  + N+L+ MY+  GR+++A  VF
Sbjct: 298 DLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVF 357

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             M+ +DV S+TAMI  L  H   +KA++ +  M   GI PDE+T V VLSAC+  G ++
Sbjct: 358 SRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLD 417

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
            G +   +++    L         ++D++ +   +  AL++ +++    +   W +L+  
Sbjct: 418 LGIR-LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNIS-GKNVVSWTSLILG 475

Query: 504 CKIHAK 509
            +I+ +
Sbjct: 476 LRINNR 481



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 130/259 (50%), Gaps = 22/259 (8%)

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           V + NAL+ M+++ GN+  A  VF +M  ++V SWN ++ G    G F EAL+++ RM  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
             ++P+ +T   VL +CA +  +  GK +H ++ +    +D  +GNAL+ MY KCG I  
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  +F  M  RD  S+ AMI G   +G   + L++FS M ++ ++PD +T   V SAC  
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASAC-- 309

Query: 439 AGLVEEGCKHFLDMSR----VYNLQPQTEHYG------CMVDLFGRAGLIREALDLIKSM 488
                      LD  R    V+    ++E  G       ++ ++   G + EA  +   M
Sbjct: 310 ---------ELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360

Query: 489 PLVPDAFVWGALLGACKIH 507
               D   W A++ +   H
Sbjct: 361 E-SKDVVSWTAMIASLVSH 378



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 40/297 (13%)

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           L  +G  ++A+     M  L ++ ++   + +L  C      + G  V+  +  +     
Sbjct: 72  LCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLC 131

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             +GNAL+ M+ + G +  A+ VF  M  RDV+S+  ++ G A  G   +AL+++  M  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 420 VGIEPDEVTFVGVLSACS-----------HAGLVEEG-----------------CKHFLD 451
             I P+  TF  VL  C+           HA ++  G                 C    +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 452 MSRVYNLQPQTEH--YGCMVDLFGRAGLIREALDL---IKSMPLVPDAFVWGALLGACKI 506
              +++  P+ +   +  M+  +   G   E L+L   ++ + + PD      +  AC++
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTN----IYSSKNRWKEALKLRKKMKERKV 559
                L   V   +V+ E  GD   I M N    +YSS  R +EA  +  +M+ + V
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGD---ISMNNSLIQMYSSLGRLEEAETVFSRMESKDV 365


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 195/588 (33%), Positives = 332/588 (56%), Gaps = 14/588 (2%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIENL--SLQNPQV 83
           P L +++  G   Q HA  ++ G        +  L    +   R  +       +++  V
Sbjct: 76  PLLRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDV 135

Query: 84  YLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
             +N ++  L  NA   EA+ L+  M+++G+  +  T+  VL  C       +   +H Y
Sbjct: 136 PAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLY 195

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
           ++K  L   ++V N ++ +Y   G+++ V K+F       + RDLV+W ++I  + +   
Sbjct: 196 AVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFD----GMSSRDLVTWNSIISGHEQGGQ 251

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
              A+  F  M  + + PD + L+ + SA ++ GD+  G  +H Y+    +++  D+   
Sbjct: 252 VASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVG-DIIAG 310

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG-LGL 321
           NA++DMY K   I +A+++FD MPV++ VSWN++I G    G   EA+ ++  MQ   GL
Sbjct: 311 NAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGL 370

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           KP   T V VL + +++G L+ G  +H    K  +N D ++G  ++D+YAKCG++D+A  
Sbjct: 371 KPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAML 430

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           +F     R    + A+I G+ +HG   KAL +FS+M Q GI PD VTFV +L+ACSHAGL
Sbjct: 431 LFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGL 490

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           V++G   F  M   Y ++P  +HY CMVD+FGRAG + +A D I++MP+ PD+ +WGALL
Sbjct: 491 VDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALL 550

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
           GAC+IH  VE+ ++  +NL   +P+  G Y+LM+N+Y+   +W    ++R  ++ + ++K
Sbjct: 551 GACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQK 610

Query: 562 TPGCSLVEVYGEFYEFRKGDKS--HPKTLEIYKLLDEIMHQSKNHGYI 607
           TPG S +EV      F  G++   HP+  EI + L +++ + ++ GY+
Sbjct: 611 TPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYV 658


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 202/586 (34%), Positives = 333/586 (56%), Gaps = 26/586 (4%)

Query: 41  KQFHAFIIKTGSPQ----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCL-SN 95
           KQ HA+ ++ G       +    +Y K+  L+    +   S +   +  +N ++  L  N
Sbjct: 218 KQVHAYGLRKGELNSFIINTLVAMYGKMGKLASSKVLLG-SFEGRDLVTWNTVLSSLCQN 276

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL-SNVYV 154
              LEA+   REM+++G+ P+ +T+  VL AC   + LR G+++HAY++K   L  N +V
Sbjct: 277 EQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 336

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +Y  C  + +  ++F         R +  W  +I  Y + +Y  EA+L F +M 
Sbjct: 337 GSALVDMYCNCKQVLSGCRVFD----GMFDRKIGLWNAMITGYAQNEYDEEALLLFIEME 392

Query: 215 Q-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
           + A L  +   +  V+ AC + G  S    IH ++      L  D F+ NAL+DMY + G
Sbjct: 393 ESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKR--GLDRDRFVQNALMDMYSRLG 450

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-----------GLK 322
            I  A+++F +M  +++V+WN++I G     + ++AL +  +MQ L            LK
Sbjct: 451 KIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLK 510

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P+  TL+ +L SCA +  L  GK +H Y  KN++ TD  +G+ALVDMYAKCG +  +  V
Sbjct: 511 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 570

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F  +  R+V ++  +++   +HG +  A+D+   M   G++P+EVTF+ V +ACSH+G+V
Sbjct: 571 FDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMV 630

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD-AFVWGALL 501
            EG K F +M + Y ++P ++HY C+VDL GRAG ++EA  LI  +P   D A  W +LL
Sbjct: 631 NEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLL 690

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
           GAC+IH  +E+ EI  +NL++ EP     Y+L+ NIYSS   W +A ++R+ MK + V+K
Sbjct: 691 GACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRK 750

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            PGCS +E   E ++F  GD SHP++ ++   L+ +  + +  GYI
Sbjct: 751 EPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYI 796



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 186/348 (53%), Gaps = 15/348 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL-LSNVYVFNTL 158
           EA+  Y +M++ G+ P+ +  P +LKA    Q + +G+Q+HA+  K    + +V V NTL
Sbjct: 76  EAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTL 135

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + LY  CG   AV+K+F       ++R+ VSW +LI +    +    A+ +F  M   ++
Sbjct: 136 VNLYRKCGDFGAVYKVF----DRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDV 191

Query: 219 RPDGMILVIVLSACSKL---GDLSLGIKIHRY-ITDNHFNLSPDVFIHNALIDMYLKCGN 274
            P    LV V  ACS       L +G ++H Y +     N     FI N L+ MY K G 
Sbjct: 192 EPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELN----SFIINTLVAMYGKMGK 247

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           + S++ +      +++V+WN++++ L    QF EAL+  R M   G++PD FT+  VL +
Sbjct: 248 LASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPA 307

Query: 335 CANIGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           C+++  L  GK +H Y  KN  ++ + F+G+ALVDMY  C ++     VF  M  R +  
Sbjct: 308 CSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGL 367

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQ-VGIEPDEVTFVGVLSACSHAG 440
           + AMI G A +    +AL +F EM +  G+  +  T  GV+ AC  +G
Sbjct: 368 WNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSG 415



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 144/260 (55%), Gaps = 7/260 (2%)

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W  L+++ V+ +   EA+L++ DM    ++PD      +L A + L D+ LG +IH ++ 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
              + +   V + N L+++Y KCG+  +  KVFD +  +N VSWNS+I+ L    +++ A
Sbjct: 121 KFGYGVD-SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 179

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE---LGKWVHTY-LDKNHINTDGFIGNA 365
           L+ FR M    ++P  FTLV V  +C+N    E   +GK VH Y L K  +N+  FI N 
Sbjct: 180 LEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNS--FIINT 237

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           LV MY K G++  +  +  S + RD+ ++  ++  L  + +  +AL+   EM   G+EPD
Sbjct: 238 LVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPD 297

Query: 426 EVTFVGVLSACSHAGLVEEG 445
             T   VL ACSH  ++  G
Sbjct: 298 GFTISSVLPACSHLEMLRTG 317


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 208/588 (35%), Positives = 333/588 (56%), Gaps = 20/588 (3%)

Query: 31  LESSKSVGQL---KQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQ 82
           L +  SVG L   KQFH++ IK G       +     LY K   +   +E   LS +   
Sbjct: 379 LSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEF-FLSTETEN 437

Query: 83  VYLYNFIIQC---LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           V L+N ++     L N N  E+  ++ +M ++G+ PN +T P +L+ C   +++ +G+Q+
Sbjct: 438 VVLWNVMLVAYGLLDNLN--ESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQI 495

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H   +KT    NVYV + L+ +YA  G  K  H L  FR+    ++D+VSWT +I  Y +
Sbjct: 496 HTQVLKTGFQFNVYVSSVLIDMYAKLG--KLDHALKIFRR--LKEKDVVSWTAMIAGYAQ 551

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
            +   EA+  F +M    +  D +     +SAC+ +  L+ G +IH     + +  S D+
Sbjct: 552 HEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGY--SDDL 609

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            + NAL+ +Y +CG +  A   FD++  K+ +SWNS+I+G    G  +EAL +F +M   
Sbjct: 610 SVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKA 669

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G + + FT    +++ AN+  ++LGK +H  + K   +++  + N L+ +YAKCG ID A
Sbjct: 670 GQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDA 729

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
              F  M  ++  S+ AM+ G + HG  +KAL +F +M Q+G+ P+ VTFVGVLSACSH 
Sbjct: 730 ERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHV 789

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLV+EG K+F  M  V+ L P+ EHY C+VDL GR+GL+  A   ++ MP+ PDA V   
Sbjct: 790 GLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRT 849

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           LL AC +H  +++ E    +L+  EP+    Y+L++N+Y+   +W    + R+ MK+R V
Sbjct: 850 LLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGV 909

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           KK PG S +EV    + F  GD+ HP   +IY+ L ++   +  +GYI
Sbjct: 910 KKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYI 957



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 145/492 (29%), Positives = 242/492 (49%), Gaps = 18/492 (3%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQ-----HQTQILYDKIISLSRGNEIENLS 77
           S+L    ++E  K VG+  Q H  ++K G        +    LY ++ +     ++ N  
Sbjct: 276 SVLSACTKVEFYK-VGE--QLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAM 332

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           LQ  +V  YN +I  LS      +A+ L+++M +  L P+  T+  +L AC    +L VG
Sbjct: 333 LQRDEVS-YNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVG 391

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q H+Y++K  + S++ +   L+ LY  C  IK  H+ F   +      ++V W  ++ A
Sbjct: 392 KQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTE----TENVVLWNVMLVA 447

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y  +D   E+   F  M    + P+      +L  CS L  + LG +IH  +    F   
Sbjct: 448 YGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQF- 506

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            +V++ + LIDMY K G +  A K+F  +  K+VVSW +MIAG     +F EAL++F+ M
Sbjct: 507 -NVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEM 565

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           Q  G+  D+      +++CA I  L  G+ +H     +  + D  +GNALV +YA+CG++
Sbjct: 566 QDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKV 625

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
             A+  F  +  +D  S+ ++I G A  G   +AL +FS+MS+ G E +  TF   +SA 
Sbjct: 626 RDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAA 685

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           ++   V+ G K    M        +TE    ++ L+ + G I +A      MP   +   
Sbjct: 686 ANVANVKLG-KQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMP-EKNEIS 743

Query: 497 WGALLGACKIHA 508
           W A+L     H 
Sbjct: 744 WNAMLTGYSQHG 755



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 211/409 (51%), Gaps = 9/409 (2%)

Query: 102 IALYREMLIKGLLPNTYTLPYVLKACWQSQ-SLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           + L+R ML + + P+  T   VL+ C          +++HA ++     ++++V N L+ 
Sbjct: 154 LGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLID 213

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           LY   G + +  K+F   Q    +RD VSW  ++    +     EA+L F  M  + + P
Sbjct: 214 LYFKNGFLNSAKKVFDGLQ----KRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYP 269

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
              I   VLSAC+K+    +G ++H  +    F+L  + ++ NAL+ +Y + GN   A +
Sbjct: 270 TPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSL--ETYVCNALVTLYSRLGNFIPAEQ 327

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VF+ M  ++ VS+NS+I+GL+ +G   +AL++F++M    LKPD  T+  +L++C+++G 
Sbjct: 328 VFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGA 387

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L +GK  H+Y  K  +++D  +  AL+D+Y KC  I  A   F S +  +V  +  M+V 
Sbjct: 388 LLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVA 447

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
             +     ++  IF++M   GIEP++ T+  +L  CS    V+ G +    + +    Q 
Sbjct: 448 YGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKT-GFQF 506

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
                  ++D++ + G +  AL + + +    D   W A++     H K
Sbjct: 507 NVYVSSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQHEK 554



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 237/503 (47%), Gaps = 52/503 (10%)

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           AN +  + L  E   +G+  N+ T  ++L  C  S     G ++H   +K    + V + 
Sbjct: 50  ANGINFLHLMEE---RGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLC 106

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
             LM LY   G +     +F         R L  W  ++  +V        +  F  M Q
Sbjct: 107 ERLMDLYIAFGDLDGAVTVFD----EMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQ 162

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGI--KIH-RYITDNHFNLSPDVFIHNALIDMYLKC 272
             ++PD      VL  C   GD+      KIH R IT  + N    +F+ N LID+Y K 
Sbjct: 163 EKVKPDERTYAGVLRGCGG-GDVPFHCVEKIHARTITHGYEN---SLFVCNPLIDLYFKN 218

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G + SA+KVFD +  ++ VSW +M++GL+  G  +EA+ +F +M   G+ P  +    VL
Sbjct: 219 GFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVL 278

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           ++C  + + ++G+ +H  + K   + + ++ NALV +Y++ G    A  VF +M  RD  
Sbjct: 279 SACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEV 338

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF--- 449
           SY ++I GL+  G + KAL++F +M    ++PD VT   +LSACS  G +  G K F   
Sbjct: 339 SYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVG-KQFHSY 397

Query: 450 ----------------LDM---------SRVYNLQPQTEH---YGCMVDLFGRAGLIREA 481
                           LD+         +  + L  +TE+   +  M+  +G    + E+
Sbjct: 398 AIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNES 457

Query: 482 LDLIKSMPL---VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI--LMTN 536
             +   M +    P+ F + ++L  C     V+L E +   +++   + +  Y+  ++ +
Sbjct: 458 FKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFN-VYVSSVLID 516

Query: 537 IYSSKNRWKEALKLRKKMKERKV 559
           +Y+   +   ALK+ +++KE+ V
Sbjct: 517 MYAKLGKLDHALKIFRRLKEKDV 539


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 192/530 (36%), Positives = 300/530 (56%), Gaps = 45/530 (8%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK------------- 169
           +L AC   +++   ++VH  +++     +V+V N L+  YA CGL++             
Sbjct: 271 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 330

Query: 170 ------------------AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
                             A  +LF   +      D+V+WT +I  Y +     EA+  F 
Sbjct: 331 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 390

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY-------ITDNHFN-LSPDVFIHN 263
            M  +   P+ + ++ VLSAC+ LG  S G +IH Y         DN F     D+ ++N
Sbjct: 391 QMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 450

Query: 264 ALIDMYLKCGNIPSARKVFDEMPV--KNVVSWNSMIAGLTHRGQFKEALDIFRRM--QGL 319
           ALIDMY KC +  +AR +FD++P+  +NVV+W  MI G    G   +AL +F  M  +  
Sbjct: 451 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 510

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI--NTDGFIGNALVDMYAKCGRID 377
           G+ P+ +T+ C+L +CA++  + +GK +H Y+ ++H   ++  F+ N L+DMY+KCG +D
Sbjct: 511 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVD 570

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A  VF SM  +   S+T+M+ G  +HG+  +ALDIF +M + G  PD++TF+ VL ACS
Sbjct: 571 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 630

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           H G+V++G  +F  MS  Y L P+ EHY C +DL  R+G + +A   +K MP+ P A VW
Sbjct: 631 HCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVW 690

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
            ALL AC++H+ VELAE  +  LV    E DG+Y L++NIY++  RWK+  ++R  MK+ 
Sbjct: 691 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 750

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +KK PGCS V+       F  GD+SHP + +IY LL+ ++ + K  GY+
Sbjct: 751 GIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYV 800



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 140/486 (28%), Positives = 225/486 (46%), Gaps = 60/486 (12%)

Query: 80  NPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           +P V+    I + +       AI +   ML  G  P+ +TLP+VLKAC +  S R G   
Sbjct: 118 SPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAF 177

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H         SNV++ N L+ +Y+ CG ++    +F      +   D++SW +++ A+VK
Sbjct: 178 HGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD-EITQRGIDDVISWNSIVSAHVK 236

Query: 200 MDYPTEAILSFFDMC------QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
                 A+  F  M         N R D + +V +L AC  L  +    ++H     N  
Sbjct: 237 SSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRN-- 294

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK------ 307
              PDVF+ NALID Y KCG + +A KVF+ M  K+VVSWN+M+AG +  G F+      
Sbjct: 295 GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELF 354

Query: 308 -----------------------------EALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
                                        EAL++FR+M   G  P+  T++ VL++CA++
Sbjct: 355 KNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASL 414

Query: 339 GWLELGKWVHTYLDKNHINT----------DGFIGNALVDMYAKCGRIDQAFGVFRS--M 386
           G    G  +H Y  KN + T          D  + NAL+DMY+KC     A  +F    +
Sbjct: 415 GAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPL 474

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEM--SQVGIEPDEVTFVGVLSACSHAGLVEE 444
           + R+V ++T MI G A +G +  AL +F EM     G+ P+  T   +L AC+H   +  
Sbjct: 475 EERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 534

Query: 445 GCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           G +    + R +  +        C++D++ + G +  A  +  SM     A  W +++  
Sbjct: 535 GKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ-KSAISWTSMMTG 593

Query: 504 CKIHAK 509
             +H +
Sbjct: 594 YGMHGR 599



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 179/345 (51%), Gaps = 26/345 (7%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS--------- 150
           EA+ L+R+M+  G LPN  T+  VL AC    +   G ++HAYS+K  LL+         
Sbjct: 384 EALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGED 443

Query: 151 -NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
            ++ V+N L+ +Y+ C   KA   +F     P  +R++V+WT +I  + +     +A+  
Sbjct: 444 EDLMVYNALIDMYSKCRSFKAARSIFD--DIPLEERNVVTWTVMIGGHAQYGDSNDALKL 501

Query: 210 FFDMCQA--NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
           F +M      + P+   +  +L AC+ L  + +G +IH Y+  +H   S   F+ N LID
Sbjct: 502 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLID 561

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY KCG++ +AR VFD M  K+ +SW SM+ G    G+  EALDIF +M+  G  PDD T
Sbjct: 562 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 621

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTD-GFIGNA-----LVDMYAKCGRIDQAFG 381
            + VL +C++ G ++ G    +Y D   ++ D G    A      +D+ A+ GR+D+A+ 
Sbjct: 622 FLVVLYACSHCGMVDQGL---SYFDS--MSADYGLTPRAEHYACAIDLLARSGRLDKAWR 676

Query: 382 VFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
             + M        + A++    +H     A    +++ ++  E D
Sbjct: 677 TVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAEND 721



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 146/341 (42%), Gaps = 18/341 (5%)

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
             ++  YL CG    A  V + +     V WN +I     +G+   A+++  RM   G +
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD FTL  VL +C  +     G   H  +  N   ++ FI NALV MY++CG +++A  +
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 212

Query: 383 FRSMKCR---DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE------PDEVTFVGVL 433
           F  +  R   DV S+ +++        AW ALD+FS+M+ +  E       D ++ V +L
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
            AC     V +  +   +  R     P       ++D + + GL+  A+ +   M    D
Sbjct: 273 PACGSLKAVPQTKEVHGNAIRNGTF-PDVFVGNALIDAYAKCGLMENAVKVFNMMEF-KD 330

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFE-PEGDGAYILMTNIYSSKNRWKEALKLRK 552
              W A++         E A  + +N+ +   P     +  +   YS +    EAL L +
Sbjct: 331 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 390

Query: 553 KMKERKVKKTPGC----SLVEVYGEFYEFRKGDKSHPKTLE 589
           +M        P C    S++        F +G + H  +L+
Sbjct: 391 QMIFS--GSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK 429


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 181/486 (37%), Positives = 295/486 (60%), Gaps = 8/486 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+AC    +L    Q+H + +K    +N  V        +    I     L  F     
Sbjct: 13  ILQAC---NTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLV-FSVEDA 68

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFD-MCQANLRPDGMILVIVLSACSKLGDLSLG 241
              D   ++T+I+AY +        + +++ M    + P+      VL AC+ L DL+LG
Sbjct: 69  RVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLG 128

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKC-GNIPSARKVFDEMPVKNVVSWNSMIAGL 300
             +H  +    F    D+F+ N ++ MY  C G +  ARK+FDEMP  + V+W +MI G 
Sbjct: 129 KAVHGSLV--KFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGY 186

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
              GQ   A+ +FR+MQ  G+ PDD T+V VL++C ++G LELGKW+ +Y++K  +    
Sbjct: 187 ARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTV 246

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            + NALVDM+AKCG +D+A G+FR+M  R + S+T++IVGLA+HG+  +A+ +F EM   
Sbjct: 247 ELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKAS 306

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
           G+ P+++ F+G+LSACSH+GLVE G ++F +M+R + + P+ EHYGCMVDL  RAGL+ E
Sbjct: 307 GMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTE 366

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540
           AL+ ++ MP+ P+  +W  L+ AC++H +++L E + + L+R EP  +  Y+L++NIY  
Sbjct: 367 ALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGK 426

Query: 541 KNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
              W++  K+R  M ++ ++K PG +++E+  E +EF  GD+SH +  EI K+++E+  +
Sbjct: 427 MLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGRE 486

Query: 601 SKNHGY 606
            K  GY
Sbjct: 487 MKRAGY 492



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 208/426 (48%), Gaps = 51/426 (11%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIEN-----LSLQNPQVY- 84
           L++  ++ +L Q H  IIK G  Q+   +L     + S  + I        S+++ +VY 
Sbjct: 14  LQACNTLPKLAQLHTHIIKLGF-QNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYD 72

Query: 85  --LYNFIIQCL--SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
             L++ II+    S+ +   AI  Y  ML  G+ PN Y  P+VLKAC   + L +G+ VH
Sbjct: 73  AFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVH 132

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVC-GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
              +K     +++V NT++ +Y  C G ++   KLF   + P+   D V+WT +I  Y +
Sbjct: 133 GSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFD--EMPKL--DPVTWTAMIGGYAR 188

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
           +     A+  F  M  A + PD + +V VLSAC+ LG L LG  I  YI      +   V
Sbjct: 189 LGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKER--VLKTV 246

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            + NAL+DM+ KCG++  A  +F  M  + +VSW S+I GL   G+  EA+ +F  M+  
Sbjct: 247 ELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKAS 306

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G+ P+D   + +L++C++ G +E G+   + + +                          
Sbjct: 307 GMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQ------------------------- 341

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
           FG+   ++      Y  M+  L+  G   +AL+    M    IEP+ + +  ++SAC   
Sbjct: 342 FGIVPKIE-----HYGCMVDLLSRAGLVTEALEFVERMP---IEPNPIIWRTLISACRVH 393

Query: 440 GLVEEG 445
           G ++ G
Sbjct: 394 GELKLG 399


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 203/575 (35%), Positives = 323/575 (56%), Gaps = 13/575 (2%)

Query: 37  VGQLKQFHAFIIKTGSPQ-----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQ 91
           + + K+ HA +I+ G        +    +Y K   +S    + +   +  ++     I  
Sbjct: 214 IARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISG 273

Query: 92  CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
              N   LE + L+  M    + P+  T+  V  AC    + R+G+ VH Y +K+    +
Sbjct: 274 YFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGD 333

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
           + + N+L+++Y+  G ++    +F   +     +D+VSWT +I + V    P +A+ ++ 
Sbjct: 334 ISMNNSLIQMYSSLGRLEEAETVFSRME----SKDVVSWTAMIASLVSHKLPFKAVETYK 389

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            M    + PD + LV VLSAC+ +G L LGI++H         L   V + N+LIDMY K
Sbjct: 390 MMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT--GLVSHVIVSNSLIDMYSK 447

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           C  + +A +VF  +  KNVVSW S+I GL    +  EAL  FR+M+   +KP+  TL+ V
Sbjct: 448 CKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISV 506

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L++CA IG L  GK +H +  +  +  DGF+ NA++DMY +CGR   A   F S K +DV
Sbjct: 507 LSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDV 565

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            ++  ++ G A  G+A  A+++F +M ++ I PDE+TF+ +L ACS +G+V EG ++F  
Sbjct: 566 TAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNI 625

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           M   YNL P  +HY C+VD+ GRAG + +A D I+ MP+ PDA +WGALL AC+IH  VE
Sbjct: 626 MKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVE 685

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           L EI  + +   + +  G YIL+ N+Y+    W +  K+R  M+ER +   PGCS VE+ 
Sbjct: 686 LGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIK 745

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           G+ + F  GD SH ++ EI  +LD    + K +G+
Sbjct: 746 GKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGF 780



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 239/457 (52%), Gaps = 21/457 (4%)

Query: 78  LQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +    V+ +N ++   + A    EA+ LY  ML   + PN YT P VLK C     +  G
Sbjct: 158 MSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARG 217

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +++HA+ ++    S+V V N L+ +Y  CG I     LF        +RD +SW  +I  
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF----DKMPKRDRISWNAMISG 273

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y +     E +  F  M + ++ PD + +  V SAC  L +  LG  +H Y+  + F   
Sbjct: 274 YFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEF--G 331

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL-THRGQFKEALDIFRR 315
            D+ ++N+LI MY   G +  A  VF  M  K+VVSW +MIA L +H+  FK A++ ++ 
Sbjct: 332 GDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFK-AVETYKM 390

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+  G+ PD+ TLV VL++CA IG L+LG  +H    K  + +   + N+L+DMY+KC  
Sbjct: 391 MELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKC 450

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +D A  VFR++  ++V S+T++I+GL I+ ++++AL  F +M +  ++P+ VT + VLSA
Sbjct: 451 VDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSA 509

Query: 436 CSHAGLVEEGCK---HFLDMSRVYN-LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           C+  G +  G +   H L     ++   P       ++D++ R G    AL+   S    
Sbjct: 510 CARIGALMRGKEIHAHALRTGVGFDGFLPNA-----ILDMYVRCGRKVPALNQFNSQK-- 562

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
            D   W  LL       + +LA  + + ++  E   D
Sbjct: 563 KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPD 599



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 193/366 (52%), Gaps = 18/366 (4%)

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +  ALLS    F  L+  + V G                ++RD+ SW  L+  Y K    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFG--------------KMSERDVFSWNVLVGGYAKAGCF 179

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EA+  +  M  A +RP+      VL  C+ + D++ G +IH ++    F    DV + N
Sbjct: 180 DEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVI--RFGFESDVDVGN 237

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           ALI MY+KCG+I +AR +FD+MP ++ +SWN+MI+G    G   E L++F  M+ L + P
Sbjct: 238 ALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDP 297

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  T+  V ++C  +    LG+ VH Y+ K+    D  + N+L+ MY+  GR+++A  VF
Sbjct: 298 DLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVF 357

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             M+ +DV S+TAMI  L  H   +KA++ +  M   GI PDE+T V VLSAC+  G ++
Sbjct: 358 SRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLD 417

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
            G +   +++    L         ++D++ +   +  AL++ +++    +   W +L+  
Sbjct: 418 LGIR-LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNIS-GKNVVSWTSLILG 475

Query: 504 CKIHAK 509
            +I+ +
Sbjct: 476 LRINNR 481



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 130/259 (50%), Gaps = 22/259 (8%)

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           V + NAL+ M+++ GN+  A  VF +M  ++V SWN ++ G    G F EAL+++ RM  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
             ++P+ +T   VL +CA +  +  GK +H ++ +    +D  +GNAL+ MY KCG I  
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  +F  M  RD  S+ AMI G   +G   + L++FS M ++ ++PD +T   V SAC  
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASAC-- 309

Query: 439 AGLVEEGCKHFLDMSR----VYNLQPQTEHYG------CMVDLFGRAGLIREALDLIKSM 488
                      LD  R    V+    ++E  G       ++ ++   G + EA  +   M
Sbjct: 310 ---------ELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360

Query: 489 PLVPDAFVWGALLGACKIH 507
               D   W A++ +   H
Sbjct: 361 E-SKDVVSWTAMIASLVSH 378



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 40/297 (13%)

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           L  +G  ++A+     M  L ++ ++   + +L  C      + G  V+  +  +     
Sbjct: 72  LCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLC 131

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             +GNAL+ M+ + G +  A+ VF  M  RDV+S+  ++ G A  G   +AL+++  M  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 420 VGIEPDEVTFVGVLSACS-----------HAGLVEEG-----------------CKHFLD 451
             I P+  TF  VL  C+           HA ++  G                 C    +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 452 MSRVYNLQPQTEH--YGCMVDLFGRAGLIREALDL---IKSMPLVPDAFVWGALLGACKI 506
              +++  P+ +   +  M+  +   G   E L+L   ++ + + PD      +  AC++
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTN----IYSSKNRWKEALKLRKKMKERKV 559
                L   V   +V+ E  GD   I M N    +YSS  R +EA  +  +M+ + V
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGD---ISMNNSLIQMYSSLGRLEEAETVFSRMESKDV 365


>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
          Length = 530

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 191/519 (36%), Positives = 311/519 (59%), Gaps = 40/519 (7%)

Query: 87  NFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           N +I+ L+        +A+Y ++  +GL+ +++T P+VL+A    +    G++ HA ++K
Sbjct: 18  NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAIK 77

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
           T    + Y  ++LM +Y + G +    K+F   + P   R LV W  +++ Y++    + 
Sbjct: 78  TGFRWDAYTGSSLMEMYTMLGRVDIARKVFD--EMPS--RALVLWNMMVRCYIRCGRYSA 133

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           A+     M ++ + PD + LV  ++ACS+  DLSLG +IH Y+ DN F    ++ + NAL
Sbjct: 134 AVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYM-DNVFGF--NLPVANAL 190

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ-------------------- 305
           +DMY K   +  A K+F++MP +N++SW  +++G    GQ                    
Sbjct: 191 LDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWT 250

Query: 306 -----------FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
                      F+EAL +FR MQ   ++PD FT+V +L  CAN+G L+ G+W+H Y ++ 
Sbjct: 251 AMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQR 310

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            +  D  +G AL+DMY+KCG I+++  VF  M+ RD  ++TA+I GLA +G+A +AL++F
Sbjct: 311 KMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELF 370

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            +M +  ++PD VTF+GVLSAC H GLV+EG K F  M  VY ++P+ EHY C+V+L GR
Sbjct: 371 QDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGR 430

Query: 475 AGLIREALDLIKSMPLVPDAF-VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
           AGL+ EA  LI  +P+  DA  ++GALL ACK H  VE++E + + +   + +     +L
Sbjct: 431 AGLLDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLL 490

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           M+N+Y++ +RW++ +++R KM    VKKT GCSL+EV G
Sbjct: 491 MSNVYATASRWEDVIRVRGKMAHPTVKKTAGCSLIEVKG 529


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 200/614 (32%), Positives = 344/614 (56%), Gaps = 23/614 (3%)

Query: 10  GSRYNDINTFQQLSLLHQSPR-------LESSKSVGQL---KQFHAFIIKTG-SPQHQTQ 58
           G+  + +  F+++ L   +P        L +  S+G L   KQ H++++K G SP +  +
Sbjct: 223 GNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIE 282

Query: 59  ----ILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGL 113
                LY K   +    EI   S     V L+N ++      + L ++  L+ +M+  G+
Sbjct: 283 GSLLDLYVKCGVIVEALEIFK-SGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGV 341

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
            PN +T P +L+ C  +  + +G+Q+H  S+KT   S++YV   L+ +Y+  G +    +
Sbjct: 342 RPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARR 401

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
           +    +     +D+VSWT++I  YV+ ++  EA+ +F DM    + PD + L   +SAC+
Sbjct: 402 ILEVLE----AKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACA 457

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
            +  +  G +IH  +  + +  S DV I NAL+++Y +CG    A  +F+ +  K+ ++W
Sbjct: 458 GIKAMRQGQQIHSRVYVSGY--SADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITW 515

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           N M++G    G ++EAL++F +M   G+K + FT V  +++ AN+  ++ GK +H  + K
Sbjct: 516 NGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIK 575

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
               ++  + NAL+ +Y KCG I+ A   F  M  R+  S+  +I   + HG   +ALD+
Sbjct: 576 TGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDL 635

Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473
           F +M Q G++P++VTF+GVL+ACSH GLVEEG  +F  MS  + + P+ +HY C+VD+ G
Sbjct: 636 FDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILG 695

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
           RAG +  A   ++ MP+  +A VW  LL AC++H  +E+ E+  + L+  EP    +Y+L
Sbjct: 696 RAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVL 755

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
           ++N Y+   +W     +RK MK+R V+K PG S +EV    + F  GD+ HP   +IYK 
Sbjct: 756 LSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKY 815

Query: 594 LDEIMHQSKNHGYI 607
           L ++  +    GYI
Sbjct: 816 LADLDDRLAKIGYI 829



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 130/447 (29%), Positives = 221/447 (49%), Gaps = 17/447 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ LY +M   G++P  Y L  VL AC ++     G+ VHA   K    S   V N L+
Sbjct: 126 EAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALI 185

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY   G +    ++  F + P   R  V++ TLI  + +      A+  F +M  +   
Sbjct: 186 ALYLRFGSLSLAERV--FSEMPYCDR--VTFNTLISRHAQCGNGESALEIFEEMRLSGWT 241

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + +  +L+AC+ +GDL+ G ++H Y+      +SPD  I  +L+D+Y+KCG I  A 
Sbjct: 242 PDCVTIASLLAACASIGDLNKGKQLHSYLLKA--GMSPDYIIEGSLLDLYVKCGVIVEAL 299

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++F      NVV WN M+          ++ D+F +M   G++P++FT  C+L +C   G
Sbjct: 300 EIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAG 359

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            + LG+ +H    K    +D ++   L+DMY+K G +D+A  +   ++ +DV S+T+MI 
Sbjct: 360 EINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIA 419

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY--N 457
           G   H    +AL+ F +M   GI PD +     +SAC+    + +G +     SRVY   
Sbjct: 420 GYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIH---SRVYVSG 476

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
                  +  +V+L+ R G  +EA  L +++    D   W  ++      A+  L E  +
Sbjct: 477 YSADVSIWNALVNLYARCGRSKEAFSLFEAIEH-KDKITWNGMVSG---FAQSGLYEEAL 532

Query: 518 ENLVRFEPEGD--GAYILMTNIYSSKN 542
           E  ++    G     +  +++I +S N
Sbjct: 533 EVFIKMYQAGVKYNVFTFVSSISASAN 559



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 235/475 (49%), Gaps = 13/475 (2%)

Query: 39  QLKQFHAFIIKTGSPQHQTQ-----ILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCL 93
           Q +  HA + K GS            LY +  SLS    + +      +V     I +  
Sbjct: 161 QGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHA 220

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
              N   A+ ++ EM + G  P+  T+  +L AC     L  G+Q+H+Y +K  +  +  
Sbjct: 221 QCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYI 280

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           +  +L+ LY  CG+I    ++F        + ++V W  ++ AY ++    ++   F  M
Sbjct: 281 IEGSLLDLYVKCGVIVEALEIF----KSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQM 336

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
             A +RP+      +L  C+  G+++LG +IH       F    D+++   LIDMY K G
Sbjct: 337 VAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFE--SDMYVSGVLIDMYSKYG 394

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
            +  AR++ + +  K+VVSW SMIAG       KEAL+ F+ MQ  G+ PD+  L   ++
Sbjct: 395 WLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAIS 454

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +CA I  +  G+ +H+ +  +  + D  I NALV++YA+CGR  +AF +F +++ +D  +
Sbjct: 455 ACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKIT 514

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           +  M+ G A  G   +AL++F +M Q G++ +  TFV  +SA ++   +++G +    + 
Sbjct: 515 WNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVI 574

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           +      +TE    ++ L+G+ G I +A      M    +   W  ++ +C  H 
Sbjct: 575 KT-GCTSETEVANALISLYGKCGSIEDAKMQFFEMS-ERNHVSWNTIITSCSQHG 627



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 189/368 (51%), Gaps = 14/368 (3%)

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +HA ++   L  +    N L+ LYA  GL++   ++F       + RD VSW  ++  Y 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFE----QLSARDNVSWVAMLSGYA 119

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +     EA+  +  M  + + P   +L  VLSAC+K      G  +H  +         +
Sbjct: 120 RNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQ--GSCSE 177

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             + NALI +YL+ G++  A +VF EMP  + V++N++I+     G  + AL+IF  M+ 
Sbjct: 178 TVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRL 237

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G  PD  T+  +L +CA+IG L  GK +H+YL K  ++ D  I  +L+D+Y KCG I +
Sbjct: 238 SGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVE 297

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  +F+S    +V  +  M+V         K+ D+F +M   G+ P+E T+  +L  C++
Sbjct: 298 ALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTY 357

Query: 439 AGLVEEGCK-HFLDMSRVYNLQPQTEHY--GCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           AG +  G + H L +   +    +++ Y  G ++D++ + G + +A  +++ +    D  
Sbjct: 358 AGEINLGEQIHLLSIKTGF----ESDMYVSGVLIDMYSKYGWLDKARRILEVLE-AKDVV 412

Query: 496 VWGALLGA 503
            W +++  
Sbjct: 413 SWTSMIAG 420


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 206/544 (37%), Positives = 316/544 (58%), Gaps = 22/544 (4%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS--LSRGNEIENLSLQNPQVYLYNF 88
           ++S K++  L QFHA II  G  Q    I +   IS  +S    I N  L NP  +LYN 
Sbjct: 16  IKSCKTIPHLHQFHAHIIHKGLEQDHFIISHFLSISTSVSYSTSIFN-RLLNPSTFLYNI 74

Query: 89  IIQCLS-NANPLEAIAL-YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           +++  S N+  ++  +L YR    +  L + YT P ++K C     L+ G+ VH  +++ 
Sbjct: 75  LLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGSAIRC 134

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            +  +VYV ++L+  Y  C  I +  K+F   + P+  R++VSWT ++  Y  +     A
Sbjct: 135 GVSDDVYVGSSLISFYGKCKEILSARKVFD--EIPE--RNVVSWTAMVAGYASVGDLENA 190

Query: 207 ILSFFDMCQANLRP-DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
              F  M + NL   + MI     S   K GDLS   K+   + +       +V     +
Sbjct: 191 KRVFERMPERNLPSWNAMI-----SGLGKAGDLSGARKVFDEMVER------NVVSFTVM 239

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           ID Y K G++ SAR +FDE P K+VV+W+++I+G +   Q  EA+ IF  M  + +KPD+
Sbjct: 240 IDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDE 299

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINT-DGFIGNALVDMYAKCGRIDQAFGVFR 384
           F +V ++++C+ +G  +L KWV +YL +  I+T    +  AL+DM+AKCG +++A  +F+
Sbjct: 300 FIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQ 359

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            M  RD+    ++I GL+IHG+  +A+++F+ M   G+ PD V F  +L+ACS  GL+E+
Sbjct: 360 DMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIED 419

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G   F  M   Y++ P   HY CMVDL  RAG +R A DL+KSMPL P A  WGALLGAC
Sbjct: 420 GWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGAC 479

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           K+H  VEL E V   L+  EPE  G+Y+L++NIY+S N+W +   +R +MKER ++K PG
Sbjct: 480 KLHGDVELREEVANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIPG 539

Query: 565 CSLV 568
           CS +
Sbjct: 540 CSYI 543


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 198/572 (34%), Positives = 320/572 (55%), Gaps = 11/572 (1%)

Query: 41  KQFHAFIIKTG----SPQHQTQI-LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
            Q H  ++ +G    SP   T + +Y K   L     + ++  +   V     I   + N
Sbjct: 268 SQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQN 327

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
               EA  L+ EM+   + P++ T    L    +  +LR G+++H Y ++  +  +V++ 
Sbjct: 328 GFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLK 387

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           + L+ +Y  C  ++   K+F  R       D+V  T +I  YV       A+  F  + Q
Sbjct: 388 SALIDIYFKCRDVEMARKIFDQR----TPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQ 443

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             +R + + L  VL AC+ L  L+LG ++H +I  N    S   ++ +A++DMY KCG +
Sbjct: 444 ERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGS--CYVGSAIMDMYAKCGRL 501

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A + F  +  K+ V WNSMI   +  G+ +EA+D+FR+M   G K D  ++   L++C
Sbjct: 502 DLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSAC 561

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           AN+  L  GK +H ++ +    +D F  +AL+DMY+KCG +D A  VF +M+ ++  S+ 
Sbjct: 562 ANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWN 621

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           ++I     HG+   +L++F  M   GI+PD VTF+ ++SAC HAG V+EG  +F  M+  
Sbjct: 622 SIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEE 681

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
             +  + EHY CMVDLFGRAG + EA  +I SMP  PDA VWG LLGAC++H  VELAE+
Sbjct: 682 LGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEV 741

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
              NL   +P+  G Y+L++N++++  +W+  LK+R  MKER V+K PGCS ++V    +
Sbjct: 742 ASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTH 801

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F   D+SHP++ +IY LL  +  + +  GY+
Sbjct: 802 MFVAADRSHPQSSQIYLLLKNLFLELRKEGYV 833



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 139/502 (27%), Positives = 232/502 (46%), Gaps = 51/502 (10%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N +   A  ++ EM      PN+ T   VL  C     +  G Q+H   + + L  + 
Sbjct: 224 VKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDS 283

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V NTL+ +YA CG +    +LF        + DLV+W  +I  YV+  +  EA   F +
Sbjct: 284 PVANTLLAMYAKCGHLFDARRLFDM----MPKTDLVTWNGMISGYVQNGFMDEASCLFHE 339

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M  A ++PD +     L   S+   L  G +IH YI  N   +S DVF+ +ALID+Y KC
Sbjct: 340 MISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRN--GVSLDVFLKSALIDIYFKC 397

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
            ++  ARK+FD+    ++V   +MI+G    G    AL+IFR +    ++ +  TL  VL
Sbjct: 398 RDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVL 457

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +CA +  L LGK +H ++ KN      ++G+A++DMYAKCGR+D A   F  +  +D  
Sbjct: 458 PACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAV 517

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------- 445
            + +MI   + +GK  +A+D+F +M   G + D V+    LSAC++   +  G       
Sbjct: 518 CWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFM 577

Query: 446 ---------------------CKHFLDMSRVYNLQPQTEH--YGCMVDLFGRAGLIREAL 482
                                C +     RV++   +     +  ++  +G  G ++++L
Sbjct: 578 MRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSL 637

Query: 483 DLIKSM---PLVPDAFVWGALLGAC----KIHAKVELAEIVMENL---VRFEPEGDGAYI 532
           +L   M    + PD   + A++ AC    ++   +     + E L    R E      Y 
Sbjct: 638 NLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARME-----HYA 692

Query: 533 LMTNIYSSKNRWKEALKLRKKM 554
            M +++    R  EA  +   M
Sbjct: 693 CMVDLFGRAGRLNEAFGMINSM 714



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/430 (29%), Positives = 207/430 (48%), Gaps = 11/430 (2%)

Query: 86  YNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N++I+  +     + A+  Y +ML  G LP+ YT PYV+KAC    S+ +G+ VH    
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQ 174

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
                 +V+V ++L++ Y+  G I     LF         +D V W  ++  YVK     
Sbjct: 175 FMGFELDVFVGSSLIKFYSENGCIHDARYLF----DRMPSKDGVLWNVMLNGYVKNGDWD 230

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A   F +M +    P+ +    VLS C+    ++ G ++H  +  +   L  D  + N 
Sbjct: 231 NATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSS--GLEMDSPVANT 288

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L+ MY KCG++  AR++FD MP  ++V+WN MI+G    G   EA  +F  M    +KPD
Sbjct: 289 LLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPD 348

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             T    L   +    L  GK +H Y+ +N ++ D F+ +AL+D+Y KC  ++ A  +F 
Sbjct: 349 SITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFD 408

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
                D+   TAMI G  ++G    AL+IF  + Q  +  + VT   VL AC  AGL   
Sbjct: 409 QRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPAC--AGLAAL 466

Query: 445 GCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
                L    + N    + + G  ++D++ + G +  A      +    DA  W +++ +
Sbjct: 467 TLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-DKDAVCWNSMITS 525

Query: 504 CKIHAKVELA 513
           C  + K E A
Sbjct: 526 CSQNGKPEEA 535



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 150/326 (46%), Gaps = 6/326 (1%)

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           L  +L+ C     L  G+Q HA  +   +  N  +   L+ +Y +CG       +F+  +
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
              ++     W  +I+ +  M     A+L +F M      PD      V+ AC  L  ++
Sbjct: 109 LWCSE----PWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVA 164

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           LG  +H  I    F L  DVF+ ++LI  Y + G I  AR +FD MP K+ V WN M+ G
Sbjct: 165 LGRVVHDKIQFMGFEL--DVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNG 222

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G +  A  +F  M+     P+  T  CVL+ CA+   +  G  +H  +  + +  D
Sbjct: 223 YVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMD 282

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             + N L+ MYAKCG +  A  +F  M   D+ ++  MI G   +G   +A  +F EM  
Sbjct: 283 SPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMIS 342

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEG 445
             ++PD +TF   L   S    + +G
Sbjct: 343 ARMKPDSITFSSFLPLLSEGATLRQG 368



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 2/174 (1%)

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           LV +L +C +   L  G+  H  +  N I  +G +G  L+ MY  CG    A  +F  ++
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
                 +  MI G  + G+   AL  + +M   G  PD+ TF  V+ AC     V  G +
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALG-R 167

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
              D  +    +        ++  +   G I +A  L   MP   D  +W  +L
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP-SKDGVLWNVML 220


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 212/575 (36%), Positives = 319/575 (55%), Gaps = 21/575 (3%)

Query: 42  QFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQV-----YLYNFII----QC 92
           Q H F++++G  Q    +    I   S+   IE   L   Q+       +  II    +C
Sbjct: 172 QLHGFVVRSGFDQ-DVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKC 230

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
             +A  LE  A  RE     ++P+ Y +  VL AC   + L  G+Q+HAY ++     +V
Sbjct: 231 GRSAVSLELFAQMRET---NVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDV 287

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V N L+  Y  C  +KA  KLF         ++++SWTT+I  Y++  +  EA+  F +
Sbjct: 288 SVVNVLIDFYTKCNRVKAGRKLFD----QMVVKNIISWTTMISGYMQNSFDWEAMKLFGE 343

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +   +PDG     VL++C     L  G ++H Y      NL  D F+ N LIDMY K 
Sbjct: 344 MNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKA--NLESDEFVKNGLIDMYAKS 401

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
             +  A+KVFD M  +NV+S+N+MI G + + +  EAL++F  M+    KP++FT   ++
Sbjct: 402 NLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALI 461

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            + +N+  L  G+  H  L K  ++   F+ NALVDMYAKCG I++A  +F S   RDV 
Sbjct: 462 TAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVV 521

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            + +MI   A HG+A +AL +F EM + GI+P+ VTFV VLSACSHAG VE+G  HF  M
Sbjct: 522 CWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM 581

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              + ++P TEHY C+V L GR+G + EA + I+ MP+ P A VW +LL AC+I   VEL
Sbjct: 582 PG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVEL 640

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            +   E  +  +P+  G+YIL++NI++SK  W +  K+R +M   +V K PG S +EV  
Sbjct: 641 GKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNN 700

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +   F   D +H +  +I  +LD ++   K  GY+
Sbjct: 701 KVNVFIARDTTH-READIGSVLDILIQHIKGAGYV 734



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/415 (32%), Positives = 214/415 (51%), Gaps = 9/415 (2%)

Query: 100 EAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           EA+ ++ ++  K G  PN + L  V++AC Q   +  G Q+H + +++    +VYV  +L
Sbjct: 133 EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSL 192

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           +  Y+  G I+    +F       +++  V+WTT+I  Y K      ++  F  M + N+
Sbjct: 193 IDFYSKNGNIEEARLVF----DQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 248

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            PD  ++  VLSACS L  L  G +IH Y+      +  DV + N LID Y KC  + + 
Sbjct: 249 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM--DVSVVNVLIDFYTKCNRVKAG 306

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           RK+FD+M VKN++SW +MI+G        EA+ +F  M  LG KPD F    VL SC + 
Sbjct: 307 RKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSR 366

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             LE G+ VH Y  K ++ +D F+ N L+DMYAK   +  A  VF  M  ++V SY AMI
Sbjct: 367 EALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMI 426

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G +   K  +AL++F EM     +P+E TF  +++A S+   +  G + F +      L
Sbjct: 427 EGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHG-QQFHNQLVKMGL 485

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
                    +VD++ + G I EA  +  S  +  D   W +++     H + E A
Sbjct: 486 DFCPFVTNALVDMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEEA 539



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 225/455 (49%), Gaps = 45/455 (9%)

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +H   + + L S+ ++ N L+ + +    +     +F    H    ++L++W++++  Y 
Sbjct: 71  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPH----KNLITWSSMVSMYS 126

Query: 199 KMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           +  Y  EA++ F D+  ++   P+  +L  V+ AC++LG +  G ++H ++  + F+   
Sbjct: 127 QQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFD--Q 184

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           DV++  +LID Y K GNI  AR VFD++  K  V+W ++IAG T  G+   +L++F +M+
Sbjct: 185 DVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMR 244

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              + PD + +  VL++C+ + +LE GK +H Y+ +     D  + N L+D Y KC R+ 
Sbjct: 245 ETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVK 304

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
               +F  M  +++ S+T MI G   +   W+A+ +F EM+++G +PD      VL++C 
Sbjct: 305 AGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCG 364

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
               +E+G +        Y ++   E      D F + GLI              D +  
Sbjct: 365 SREALEQGRQ-----VHAYTIKANLES-----DEFVKNGLI--------------DMYAK 400

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
             LL    I AK     +  +N++        +Y  M   YSS+ +  EAL+L  +M+ R
Sbjct: 401 SNLL----IDAKKVFDVMAEQNVI--------SYNAMIEGYSSQEKLSEALELFHEMRVR 448

Query: 558 --KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
             K  +    +L+         R G + H + +++
Sbjct: 449 LQKPNEFTFAALITAASNLASLRHGQQFHNQLVKM 483


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 187/495 (37%), Positives = 292/495 (58%), Gaps = 7/495 (1%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L P+      +LK C Q   L+ G+ VH + + +    ++ + N+L+ +YA CG ++   
Sbjct: 70  LEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGAR 129

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
           +LF    H    RD+VSWT++I  Y + D  ++A+L F  M      P+   L  ++  C
Sbjct: 130 RLFDEMPH----RDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCC 185

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
             +   + G +IH       +    +VF+ ++L+DMY +CG +  A  VFD++  KN VS
Sbjct: 186 GYMASYNCGRQIHACCWK--YGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS 243

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WN++IAG   +G+ +EAL +F RMQ  G +P +FT   +L+SC+++G LE GKW+H +L 
Sbjct: 244 WNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLM 303

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K+     G++GN L+ MYAK G I  A  VF  +   DV S  +M++G A HG   +A  
Sbjct: 304 KSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQ 363

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
            F EM + GIEP+++TF+ VL+ACSHA L++EG KH+  + R YN++P+  HY  +VDL 
Sbjct: 364 QFDEMIRFGIEPNDITFLSVLTACSHARLLDEG-KHYFGLMRKYNIEPKVSHYATIVDLL 422

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           GRAGL+ +A   I+ MP+ P   +WGALLGA K+H   E+     + +   +P   G + 
Sbjct: 423 GRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHT 482

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           L+ NIY+S  RW++  K+RK MK+  VKK P CS VEV    + F   D +HP+  +I+K
Sbjct: 483 LLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHK 542

Query: 593 LLDEIMHQSKNHGYI 607
           + +++  + K  GY+
Sbjct: 543 MWEKLNQKIKEIGYV 557



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 172/312 (55%), Gaps = 6/312 (1%)

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
            +L PD  +   +L  C++LG L  G  +H ++ +++F    D+ I N+L+ MY +CG++
Sbjct: 68  GSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFK--HDLVIQNSLLFMYARCGSL 125

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             AR++FDEMP +++VSW SMI G     +  +AL +F RM   G +P++FTL  ++  C
Sbjct: 126 EGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCC 185

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
             +     G+ +H    K   +++ F+G++LVDMYA+CG + +A  VF  + C++  S+ 
Sbjct: 186 GYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWN 245

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           A+I G A  G+  +AL +F  M + G  P E T+  +LS+CS  G +E+G   +L    +
Sbjct: 246 ALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQG--KWLHAHLM 303

Query: 456 YNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            + Q    + G  ++ ++ ++G IR+A  +   +  V D     ++L     H   + A 
Sbjct: 304 KSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKV-DVVSCNSMLIGYAQHGLGKEAA 362

Query: 515 IVMENLVRFEPE 526
              + ++RF  E
Sbjct: 363 QQFDEMIRFGIE 374



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 154/333 (46%), Gaps = 6/333 (1%)

Query: 54  QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGL 113
           Q+    +Y +  SL     + +       V   + I     N    +A+ L+  ML  G 
Sbjct: 112 QNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGA 171

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
            PN +TL  ++K C    S   G+Q+HA   K    SNV+V ++L+ +YA CG +     
Sbjct: 172 EPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAML 231

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
           +F         ++ VSW  LI  Y +     EA+  F  M +   RP       +LS+CS
Sbjct: 232 VF----DKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCS 287

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
            +G L  G  +H ++  +   L    ++ N L+ MY K G+I  A KVFD++   +VVS 
Sbjct: 288 SMGCLEQGKWLHAHLMKSSQKLVG--YVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSC 345

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           NSM+ G    G  KEA   F  M   G++P+D T + VL +C++   L+ GK     + K
Sbjct: 346 NSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRK 405

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
            +I         +VD+  + G +DQA      M
Sbjct: 406 YNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEM 438


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 209/602 (34%), Positives = 334/602 (55%), Gaps = 14/602 (2%)

Query: 12  RYNDIN-TFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI--LYDKIISLS 68
           RY+D+       + L +    E+   VG  K+ H  ++K+G       +  L +      
Sbjct: 127 RYDDVEPVVYNFTYLLKVCGDEAELRVG--KEIHGLLVKSGFSLDLFAMTGLENMYAKCR 184

Query: 69  RGNEIENLSLQNPQVYL--YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLK 125
           + NE   +  + P+  L  +N I+   S N     A+ + + M  + L P+  T+  VL 
Sbjct: 185 QVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLP 244

Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
           A    + + VG+++H Y+M++   S V +   L+ +YA CG ++   +LF        +R
Sbjct: 245 AVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFD----GMLER 300

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           ++VSW ++I AYV+ + P EA+L F  M    ++P  + ++  L AC+ LGDL  G  IH
Sbjct: 301 NVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH 360

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
           +   +    L  +V + N+LI MY KC  + +A  +F ++  + +VSWN+MI G    G+
Sbjct: 361 KLSVE--LGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGR 418

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
             +AL+ F +M+   +KPD FT V V+ + A +      KW+H  + ++ ++ + F+  A
Sbjct: 419 PIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTA 478

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           LVDMYAKCG I  A  +F  M  R V ++ AMI G   HG    AL++F EM +  I+P+
Sbjct: 479 LVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPN 538

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
            VTF+ V+SACSH+GLVE G K F  M   Y+++   +HYG MVDL GRAG + EA D I
Sbjct: 539 GVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFI 598

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
             MP+ P   V+GA+LGAC+IH  V  AE   E L    P+  G ++L+ NIY + + W+
Sbjct: 599 MQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWE 658

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           +  ++R  M  + ++KTPGCS+VE+  E + F  G  +HP + +IY  L++++   K  G
Sbjct: 659 KVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAG 718

Query: 606 YI 607
           Y+
Sbjct: 719 YV 720



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 151/521 (28%), Positives = 263/521 (50%), Gaps = 48/521 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENLS-----LQNPQVY 84
           LE   S+ +L+Q    + K G   +Q      K++SL  R   ++  +     + +    
Sbjct: 44  LERCSSLKELRQILPLVFKNG--LYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNV 101

Query: 85  LYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           LY+ +++  +  + L+ A+  +  M    + P  Y   Y+LK C     LRVG+++H   
Sbjct: 102 LYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K+    +++    L  +YA C  +    K+F        +RDLVSW T++  Y +    
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVNEARKVF----DRMPERDLVSWNTIVAGYSQNGMA 217

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
             A+     MC+ NL+P  + +V VL A S L  +S+G +IH Y   + F+    V I  
Sbjct: 218 RMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFD--SLVNIST 275

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL+DMY KCG++ +AR++FD M  +NVVSWNSMI         KEA+ IF++M   G+KP
Sbjct: 276 ALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKP 335

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
            D +++  L++CA++G LE G+++H    +  ++ +  + N+L+ MY KC  +D A  +F
Sbjct: 336 TDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMF 395

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS------ 437
             ++ R + S+ AMI+G A +G+   AL+ FS+M    ++PD  T+V V++A +      
Sbjct: 396 GKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITH 455

Query: 438 HA----GLVEEGC--------KHFLDM----------SRVYNLQPQ--TEHYGCMVDLFG 473
           HA    G+V   C           +DM            ++++  +     +  M+D +G
Sbjct: 456 HAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYG 515

Query: 474 RAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVE 511
             G  + AL+L + M    + P+   + +++ AC     VE
Sbjct: 516 THGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVE 556



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 130/277 (46%), Gaps = 7/277 (2%)

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
           ++L  CS L +L    +I   +  N   L  + F    L+ ++ + G++  A +VF+ + 
Sbjct: 42  LLLERCSSLKELR---QILPLVFKN--GLYQEHFFQTKLVSLFCRYGSVDEAARVFEPID 96

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
            K  V +++M+ G        +AL  F RM+   ++P  +    +L  C +   L +GK 
Sbjct: 97  SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           +H  L K+  + D F    L +MYAKC ++++A  VF  M  RD+ S+  ++ G + +G 
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGM 216

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
           A  AL++   M +  ++P  +T V VL A S   L+  G K     +             
Sbjct: 217 ARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG-KEIHGYAMRSGFDSLVNIST 275

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
            +VD++ + G +  A  L   M L  +   W +++ A
Sbjct: 276 ALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDA 311


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 196/531 (36%), Positives = 289/531 (54%), Gaps = 7/531 (1%)

Query: 78  LQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           ++NP V  ++ +I  L    +  EA  L+  M  KG  PN +TL  ++        LR G
Sbjct: 112 IRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG 171

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           Q +H    K    S+  V N L+ +Y     ++  +K+F    +P    DLVSW  L+  
Sbjct: 172 QSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNP----DLVSWNALLSG 227

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           +            F+ M     +P+    + VL +CS L D   G ++H +I  N  +  
Sbjct: 228 FYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSD-- 285

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D F+  AL+DMY K   +  A   FD +  +++ SW  +I+G     Q ++A+  FR+M
Sbjct: 286 DDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQM 345

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           Q  G+KP+++TL   L+ C+++  LE G+ +H    K     D F+G+ALVD+Y KCG +
Sbjct: 346 QREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCM 405

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           + A  +F+ +  RD+ S+  +I G + HG+  KAL+ F  M   GI PDE TF+GVLSAC
Sbjct: 406 EHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSAC 465

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           S  GLVEEG K F  MS++Y + P  EHY CMVD+ GRAG   E    I+ M L P + +
Sbjct: 466 SFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLI 525

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W  +LGACK+H  V+  E   + L   EP  D +YIL++NI++SK RW +   +R  M  
Sbjct: 526 WETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTS 585

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R +KK PGCS VEV G+ + F   D SHPK  EIY  LD++     + GY+
Sbjct: 586 RGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYV 636



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 207/404 (51%), Gaps = 20/404 (4%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           + +TL  VLK C  + SLR G+ +HA ++++    + ++  +L+ +Y+ CG +    K+F
Sbjct: 50  SKFTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVF 109

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
              ++P    D+V+W+ +I    +  +  EA   F  M +   RP+   L  ++S  + +
Sbjct: 110 TKIRNP----DVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNM 165

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
           GDL  G  IH  I    +    D  + N LI MY+K   +    KVF+ M   ++VSWN+
Sbjct: 166 GDLRYGQSIHGCIC--KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNA 223

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           +++G            IF +M   G KP+ FT + VL SC+++   E GK VH ++ KN 
Sbjct: 224 LLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNS 283

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
            + D F+G ALVDMYAK   ++ A   F  +  RD++S+T +I G A   +A KA+  F 
Sbjct: 284 SDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFR 343

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG------CMV 469
           +M + GI+P+E T    LS CSH   +E G        +++ +  +  H+G       +V
Sbjct: 344 QMQREGIKPNEYTLASCLSGCSHMATLENG-------RQLHAVAVKAGHFGDIFVGSALV 396

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           DL+G+ G +  A  + K + +  D   W  ++     H + E A
Sbjct: 397 DLYGKCGCMEHAEAIFKGL-ISRDIVSWNTIISGYSQHGQGEKA 439



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 167/345 (48%), Gaps = 9/345 (2%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           +++ VSW  L+  Y ++    + +  F  M +   +     L  VL  C+  G L  G  
Sbjct: 13  EKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKV 72

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303
           +H     +   +  D F+  +L+DMY KCG +  A KVF ++   +VV+W++MI GL  +
Sbjct: 73  LHALALRSGCEI--DEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQ 130

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
           G  +EA ++F  M+  G +P+ FTL  ++++  N+G L  G+ +H  + K    +D  + 
Sbjct: 131 GHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVS 190

Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423
           N L+ MY K   ++    VF +M   D+ S+ A++ G        +   IF +M   G +
Sbjct: 191 NPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFK 250

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREAL 482
           P+  TF+ VL +CS   L++      +    + N     +  G  +VD++ +A  + +A 
Sbjct: 251 PNMFTFISVLRSCS--SLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAG 308

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
                + +  D F W  ++     +A+ + AE  ++   + + EG
Sbjct: 309 VAFDRL-VNRDIFSWTVIISG---YAQTDQAEKAVKYFRQMQREG 349



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 115/233 (49%), Gaps = 16/233 (6%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A ++F  MP KN VSWN+++ G    G  K+ L +F +M+    K   FTL  VL  CAN
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
            G L  GK +H    ++    D F+G +LVDMY+KCG +  A  VF  ++  DV +++AM
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-------CKHFL 450
           I GL   G   +A ++F  M + G  P++ T   ++S  ++ G +  G       CK   
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK--- 180

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
                Y  +        ++ ++ ++  + +   + ++M   PD   W ALL  
Sbjct: 181 -----YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALLSG 227


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 315/558 (56%), Gaps = 40/558 (7%)

Query: 30  RLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSR-------GNEIENLS----- 77
           +LE+ +S+ +L Q H  +IK+         +   +I LSR         E  NLS     
Sbjct: 11  QLENCRSMVELNQLHGLMIKSS--------VIRNVIPLSRLIDFCTTCPETMNLSYARSV 62

Query: 78  ---LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133
              +  P VY++N +I+  SN+ NP +A+  Y+EML KG  P+ +T PYVLKAC   + +
Sbjct: 63  FESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDI 122

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
           + G  VH + +KT    N+YV   L+ +Y  CG +    ++F        + ++V+W +L
Sbjct: 123 QFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFE----DIPKLNVVAWGSL 178

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I  +V  +  ++AI +F +M    ++P+  I+V +L AC +  D     K         F
Sbjct: 179 ISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVACGRCFDPYCQSKFE-------F 231

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
           N    V +  +LIDMY KCG++ +AR +FD MP +N+VSWNS+I G +  G  +EA+ +F
Sbjct: 232 N----VILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMF 287

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             M  LG+ PD  T   V+ +    G  +LG+ +H Y+ K     D  I  ALV+MYAK 
Sbjct: 288 SDMLDLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKT 347

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGV 432
           G  + A  +F  ++ +D  ++T +I+GLA HG   KAL IF  M + G   PD +T++GV
Sbjct: 348 GNAESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGV 407

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           L ACSH GLVEEG ++F +M  +Y L+P  EHYGCMVD+  RAG   EA  L+K+MP+ P
Sbjct: 408 LYACSHIGLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQP 467

Query: 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552
            A +WGALL  C+IH  ++LA+ +   +   E  G G Y+L++NIY+   RW +   +R+
Sbjct: 468 TANIWGALLNGCEIHENLDLADRIRSMVSESEELGSGIYVLLSNIYAKAGRWADVKLIRE 527

Query: 553 KMKERKVKKTPGCSLVEV 570
            MK ++V K    S VE 
Sbjct: 528 SMKSKRVDKLLAHSSVET 545


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/520 (37%), Positives = 304/520 (58%), Gaps = 40/520 (7%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLS--NVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           ++L++C +  SL +G+++HA  + T +      ++ N L++ YA CG      K+F   +
Sbjct: 18  FLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFD--E 75

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
            P + +D V WTTL+  +V+ +   EA+L F +M +  ++PD + LV +   C++LGD+ 
Sbjct: 76  IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVV 135

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK------------------- 280
           +G + H  +      L       NA++DMY K G +  AR+                   
Sbjct: 136 VGAQGHGCMVK--MGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDG 193

Query: 281 ------------VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GLGLKPDDFT 327
                       VFDEMP +N V+W  MIAG    G  +E+  + R M   L ++ +  T
Sbjct: 194 VIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVT 253

Query: 328 LVCVLNSCANIGWLELGKWVHTY-LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           L  +L +C+  G L +G+WVH Y L       +  +G A+VDMYAKCGRI  AF  F+ M
Sbjct: 254 LCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKM 313

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             R+V S+ AM+ GLA+HG    ALDIF +M +   +PD+VTF  VLSACSH+GLV++GC
Sbjct: 314 PQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGC 372

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
            +F ++  VY + P+ EHY CMVDL GRAG + EA  L++ MP+ P+  V G+LLG+C I
Sbjct: 373 FYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSI 432

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H K++L E +++ LV+ +P+    +IL++N+Y+   +   A  LR+ +K+R +KK PG S
Sbjct: 433 HGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMS 492

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            + V G+ ++F  GDKSHP+T E+Y +LDE++ + +  GY
Sbjct: 493 SIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGY 532



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 209/466 (44%), Gaps = 50/466 (10%)

Query: 11  SRYNDINTF-QQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-- 67
           SR+  +++  +    L +S   ESS  +G+  + HA II TG        L++ ++    
Sbjct: 4   SRHTALSSVSRHYRFLLRSCARESSLDIGE--RLHATIITTGIAGAPETFLHNALLQFYA 61

Query: 68  SRG------NEIENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTL 120
           S G         + +   +     +  ++ C    N   EA+ ++ EM   G+ P+  TL
Sbjct: 62  SCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTL 121

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH---- 176
             +   C +   + VG Q H   +K  L       N +M +YA  GL+    ++F+    
Sbjct: 122 VCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKG 181

Query: 177 -------------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
                                    F + P  +R+ V+WT +I  Y+      E+     
Sbjct: 182 QSVVSWTVILDGVIRSEGVRNGRVVFDEMP--ERNEVAWTIMIAGYLDSGLTQESFALVR 239

Query: 212 DMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
           +M     +  + + L  +L+ACS+ GDL +G  +H Y          ++ +  A++DMY 
Sbjct: 240 EMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTK-EKELNIMVGTAMVDMYA 298

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG I  A K F +MP +NVVSWN+M++GL   G  + ALDIF +M     KPDD T   
Sbjct: 299 KCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTS 357

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA-LVDMYAKCGRIDQAFGVFRSMKCR 389
           VL++C++ G ++ G +    L+  +  T      A +VD+  + GR+++A  + R M  R
Sbjct: 358 VLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIR 417

Query: 390 DVYSYTAMIVG-LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
                   ++G  +IHGK      +  E+ Q  ++P    +  +LS
Sbjct: 418 PNEVVLGSLLGSCSIHGKLQLGEHLLQELVQ--LDPQNTEYHILLS 461



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 45/301 (14%)

Query: 100 EAIALYREMLIKGLLPNTY-TLPYVLKACWQSQSLRVGQQVHAYSMKTALLS-NVYVFNT 157
           E+ AL REM+    +   Y TL  +L AC QS  L +G+ VHAY++KT     N+ V   
Sbjct: 233 ESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTA 292

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           ++ +YA CG I    K   F++ P  QR++VSW  ++   + M     A L  F      
Sbjct: 293 MVDMYAKCGRIHIAFKF--FKKMP--QRNVVSWNAMLSG-LAMHGLGRAALDIFPQMFKE 347

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
            +PD +    VLSACS  G +  G      + ++ + ++P V  +  ++D+  + G +  
Sbjct: 348 AKPDDVTFTSVLSACSHSGLVDQGCFYFGNL-ESVYGITPKVEHYACMVDLLGRAGRLEE 406

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A  +  EMP+                                  +P++  L  +L SC+ 
Sbjct: 407 AEILVREMPI----------------------------------RPNEVVLGSLLGSCSI 432

Query: 338 IGWLELGK-WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            G L+LG+  +   +  +  NT+  I   L +MYA  G+ ++A  + + +K R +     
Sbjct: 433 HGKLQLGEHLLQELVQLDPQNTEYHI--LLSNMYALAGKQNRANSLRQVLKKRGIKKVPG 490

Query: 397 M 397
           M
Sbjct: 491 M 491


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/504 (37%), Positives = 294/504 (58%), Gaps = 39/504 (7%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +++HA+ +K +L  + ++   ++ L      +     +F   ++P    ++ S+  +I+ 
Sbjct: 24  KKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENP----NVFSYNAIIRT 79

Query: 197 YVKMDYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           Y        AI  F  M    +  PD      V+ +C+ L    LG ++H ++    F  
Sbjct: 80  YTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCK--FGP 137

Query: 256 SPDVFIHNALIDMYLKCGNIP-------------------------------SARKVFDE 284
                  NALIDMY KCG++                                SAR+VFDE
Sbjct: 138 KTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDE 197

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           MP + +VSW +MI G    G + +AL IFR MQ +G++PD+ +++ VL +CA +G LE+G
Sbjct: 198 MPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVG 257

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           KW+H Y +K+    +  + NALV+MYAKCG ID+A+G+F  M  +DV S++ MI GLA H
Sbjct: 258 KWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANH 317

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           GK + A+ +F +M + G+ P+ VTFVGVLSAC+HAGL  EG ++F  M   Y+L+PQ EH
Sbjct: 318 GKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEH 377

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           YGC+VDL GR+G + +ALD I  MP+ PD+  W +LL +C+IH  +E+A + ME L++ E
Sbjct: 378 YGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLE 437

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           PE  G Y+L+ NIY+  ++W+    +RK ++ +++KKTPGCSL+EV     EF  GD S 
Sbjct: 438 PEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQEFVSGDDSK 497

Query: 585 PKTLEIYKLLDEI-MHQSKNHGYI 607
           P + E++ +L  + +HQ +   +I
Sbjct: 498 PFSQEVFWILKGLTLHQIRTKDFI 521



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 219/439 (49%), Gaps = 55/439 (12%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS-----------LQ 79
           L +   + +LK+ HA I+K    Q  +  L  K++ L      +NLS           L+
Sbjct: 14  LRNCPKIAELKKIHAHIVKLSLSQ--SNFLVTKMLDLC-----DNLSHVDYATMIFQQLE 66

Query: 80  NPQVYLYNFIIQCLSN--ANPLEAIALYREMLI-KGLLPNTYTLPYVLKACWQSQSLRVG 136
           NP V+ YN II+  ++   +PL AI ++ +ML  K   P+ +T P+V+K+C      R+G
Sbjct: 67  NPNVFSYNAIIRTYTHNHKHPL-AITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLG 125

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF-----------------HFR- 178
           QQVHA+  K    ++    N L+ +Y  CG +   ++++                 H R 
Sbjct: 126 QQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRL 185

Query: 179 -QHPQAQ--------RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
            Q   A+        R +VSWTT+I  Y +     +A+  F +M    + PD + ++ VL
Sbjct: 186 GQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVL 245

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
            AC++LG L +G  IH+Y   + F  +  VF  NAL++MY KCG I  A  +F++M  K+
Sbjct: 246 PACAQLGALEVGKWIHKYSEKSGFLKNAGVF--NALVEMYAKCGCIDEAWGLFNQMIEKD 303

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG-WLELGKWVH 348
           V+SW++MI GL + G+   A+ +F  MQ  G+ P+  T V VL++CA+ G W E  ++  
Sbjct: 304 VISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFD 363

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKA 407
                 H+         LVD+  + G+++QA      M  + D  ++ +++    IH   
Sbjct: 364 VMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNL 423

Query: 408 WKALDIFSEMSQVGIEPDE 426
             A+    ++  + +EP+E
Sbjct: 424 EIAVVAMEQL--LKLEPEE 440



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 158/364 (43%), Gaps = 40/364 (10%)

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
            V  L  C K+ +L    KIH +I     +LS   F+   ++D+     ++  A  +F +
Sbjct: 10  FVTTLRNCPKIAELK---KIHAHIVK--LSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQ 64

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLEL 343
           +   NV S+N++I   TH  +   A+ +F +M       PD FT   V+ SCA +    L
Sbjct: 65  LENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRL 124

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG---------------------- 381
           G+ VH ++ K    T     NAL+DMY KCG +  A+                       
Sbjct: 125 GQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVR 184

Query: 382 ---------VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
                    VF  M CR + S+T MI G A  G    AL IF EM  VGIEPDE++ + V
Sbjct: 185 LGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISV 244

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           L AC+  G +E G K     S           +  +V+++ + G I EA  L   M +  
Sbjct: 245 LPACAQLGALEVG-KWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQM-IEK 302

Query: 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG-AYILMTNIYSSKNRWKEALKLR 551
           D   W  ++G    H K   A  V E++ +     +G  ++ + +  +    W E L+  
Sbjct: 303 DVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYF 362

Query: 552 KKMK 555
             M+
Sbjct: 363 DVMR 366



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 131/248 (52%), Gaps = 12/248 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ ++REM + G+ P+  ++  VL AC Q  +L VG+ +H YS K+  L N  VFN L+
Sbjct: 221 DALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALV 280

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I     LF    +   ++D++SW+T+I           AI  F DM +A + 
Sbjct: 281 EMYAKCGCIDEAWGLF----NQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVT 336

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+G+  V VLSAC+  G  + G++    +  + ++L P +  +  L+D+  + G +  A 
Sbjct: 337 PNGVTFVGVLSACAHAGLWNEGLRYFDVMRVD-YHLEPQIEHYGCLVDLLGRSGQVEQAL 395

Query: 280 KVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
               +MP++ +  +WNS+++    R      + +    Q L L+P++     +L   ANI
Sbjct: 396 DTILKMPMQPDSRTWNSLLSSC--RIHHNLEIAVVAMEQLLKLEPEESGNYVLL---ANI 450

Query: 339 GWLELGKW 346
            + +L KW
Sbjct: 451 -YAKLDKW 457


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 207/581 (35%), Positives = 328/581 (56%), Gaps = 28/581 (4%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKII-SLSRGNEIENL-----SLQNPQVYLYNFIIQC 92
            +KQ HA +IK     HQ   +  K+I S S  N + +       + +P V+LYN++I+ 
Sbjct: 37  HIKQIHAQLIKC--HLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRA 94

Query: 93  LS----NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQS-LRVGQQVHAYSMKTA 147
            S     +N L A  +  +M + G+L + +T P++LK C  S S L + + VHA+  K  
Sbjct: 95  YSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLG 154

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
              +++V N+L+  Y  CG ++   K+F   +    +RD+VSW +++   VK      A+
Sbjct: 155 FYWDIFVPNSLIDCYCRCGDVEMAMKVFSGME----ERDVVSWNSMVGGLVKNGDLDGAL 210

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F +M +     D +    +L   +K G++    K+   + +       D+   + ++ 
Sbjct: 211 KVFDEMPER----DRVSWNTMLDGFTKAGEMDKAFKLFERMAER------DIVSWSTMVC 260

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
            Y K G++  AR +FD  PVKN+V W ++I+G   +GQ KEA+++   M+  GL+ DD  
Sbjct: 261 GYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGF 320

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
            + +L +CA  G L LGK +H    ++       + N+ +DMYAKCG +D AF VF  MK
Sbjct: 321 FISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMK 380

Query: 388 C-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             +D+ S+ +MI G  IHG   K++++F+ M + G +PD  TF+G+L AC+HAGLV EG 
Sbjct: 381 TEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGR 440

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
            +F  M RVY + PQ EHYGCMVDL GR G ++EA  L++SMP  P+A + G LLGAC++
Sbjct: 441 GYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRM 500

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H  V+LA  V + L +  P   G + L++NIY+    W    K+RK+M +   +K  G S
Sbjct: 501 HNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDEGGQKPSGVS 560

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +EV  E +EF   D SHPK+ +IY ++D ++H  +  GY+
Sbjct: 561 SIEVEEEVHEFTVRDWSHPKSGDIYNMIDRLVHDLRQVGYV 601


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/591 (35%), Positives = 315/591 (53%), Gaps = 11/591 (1%)

Query: 21   QLSLLHQSPRLESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENL-- 76
            +++ LH      +S +    K  H  I+++G  S  H    L +         E +N+  
Sbjct: 431  RVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFE 490

Query: 77   SLQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
              Q   V  +N +I   +     E A  L++EM  + L P+  T   VL  C   ++L +
Sbjct: 491  GTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALEL 550

Query: 136  GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            G+Q+H    ++ L  +V + N L+ +Y  CG ++    +FH  QH    RD++SWT +I 
Sbjct: 551  GKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQH----RDVMSWTAMIG 606

Query: 196  AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
                     +AI  F+ M     RP       +L  C+    L  G K+  YI ++ + L
Sbjct: 607  GCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYEL 666

Query: 256  SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
              D  + NALI  Y K G++  AR+VFD+MP +++VSWN +IAG    G  + A++   +
Sbjct: 667  --DTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQ 724

Query: 316  MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
            MQ   + P+ F+ V +LN+C++   LE GK VH  + K  +  D  +G AL+ MYAKCG 
Sbjct: 725  MQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGS 784

Query: 376  IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
              +A  VF ++  ++V ++ AMI   A HG A KAL  F+ M + GI+PD  TF  +LSA
Sbjct: 785  QGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSA 844

Query: 436  CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
            C+HAGLV EG + F  M   Y + P  EHYGC+V L GRA   +EA  LI  MP  PDA 
Sbjct: 845  CNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAA 904

Query: 496  VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
            VW  LLGAC+IH  + LAE    N ++        YIL++N+Y++  RW +  K+R+ M+
Sbjct: 905  VWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVME 964

Query: 556  ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             R ++K PG S +EV    +EF   D+SHP+T EIY  L  +  + +  GY
Sbjct: 965  GRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGY 1015



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/503 (30%), Positives = 253/503 (50%), Gaps = 33/503 (6%)

Query: 14  NDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQIL--YDKIISLS 68
           N I     L+  +    LE+ K +      H+ IIK G    P+ Q  +L  Y K   L 
Sbjct: 127 NKITYISILTACYSPAELENGKKI------HSQIIKAGYQRDPRVQNSLLSMYGKCGDLP 180

Query: 69  RGNEIENLSLQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKAC 127
           R  ++    +    V  YN ++   +  A   E + L+ +M  +G+ P+  T   +L A 
Sbjct: 181 RARQV-FAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAF 239

Query: 128 WQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDL 187
                L  G+++H  +++  L S++ V   L+ +   CG + +  + F       A RD+
Sbjct: 240 TTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFK----GTADRDV 295

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL-----VIVLSACSKLGDLSLGI 242
           V +  LI A  +  +  EA   ++ M     R DG+ L     + +L+ACS    L  G 
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRM-----RSDGVALNRTTYLSILNACSTSKALEAGK 350

Query: 243 KIHRYIT-DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            IH +I+ D H   S DV I NALI MY +CG++P AR++F  MP ++++SWN++IAG  
Sbjct: 351 LIHSHISEDGH---SSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYA 407

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
            R    EA+ ++++MQ  G+KP   T + +L++CAN      GK +H  + ++ I ++G 
Sbjct: 408 RREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGH 467

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           + NAL++MY +CG + +A  VF   + RDV S+ +MI G A HG    A  +F EM    
Sbjct: 468 LANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEE 527

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           +EPD +TF  VLS C +   +E G K          LQ        +++++ R G +++A
Sbjct: 528 LEPDNITFASVLSGCKNPEALELG-KQIHGRITESGLQLDVNLGNALINMYIRCGSLQDA 586

Query: 482 LDLIKSMPLVPDAFVWGALLGAC 504
            ++  S+    D   W A++G C
Sbjct: 587 RNVFHSLQH-RDVMSWTAMIGGC 608



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 243/477 (50%), Gaps = 14/477 (2%)

Query: 83  VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           V  +N +I C +      +A  L+ EM   G +PN  T   +L AC+    L  G+++H+
Sbjct: 93  VISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHS 152

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             +K     +  V N+L+ +Y  CG +    ++F       + RD+VS+ T++  Y +  
Sbjct: 153 QIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVF----AGISPRDVVSYNTMLGLYAQKA 208

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           Y  E +  F  M    + PD +  + +L A +    L  G +IH+   +   N   D+ +
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLN--SDIRV 266

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
             AL+ M ++CG++ SA++ F     ++VV +N++IA L   G   EA + + RM+  G+
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
             +  T + +LN+C+    LE GK +H+++ ++  ++D  IGNAL+ MYA+CG + +A  
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           +F +M  RD+ S+ A+I G A      +A+ ++ +M   G++P  VTF+ +LSAC+++  
Sbjct: 387 LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
             +G     D+ R   ++        +++++ R G + EA ++ +      D   W +++
Sbjct: 447 YADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWNSMI 504

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS-KNRWKEALKLRKKMKER 557
                H   E A  + + +   E E D   I   ++ S  KN   EAL+L K++  R
Sbjct: 505 AGHAQHGSYETAYKLFQEMQNEELEPDN--ITFASVLSGCKN--PEALELGKQIHGR 557



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 198/384 (51%), Gaps = 14/384 (3%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+ C + + L   +++HA  ++  +  ++++ N L+ +Y  C  +   H++F  ++ P+
Sbjct: 33  LLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVF--KEMPR 90

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
             RD++SW +LI  Y +  +  +A   F +M  A   P+ +  + +L+AC    +L  G 
Sbjct: 91  --RDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           KIH  I    +   P V   N+L+ MY KCG++P AR+VF  +  ++VVS+N+M+     
Sbjct: 149 KIHSQIIKAGYQRDPRV--QNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
           +   KE L +F +M   G+ PD  T + +L++      L+ GK +H    +  +N+D  +
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRV 266

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           G ALV M  +CG +D A   F+    RDV  Y A+I  LA HG   +A + +  M   G+
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326

Query: 423 EPDEVTFVGVLSACSHAGLVEEGC---KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             +  T++ +L+ACS +  +E G     H  +     ++Q        ++ ++ R G + 
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGN----ALISMYARCGDLP 382

Query: 480 EALDLIKSMPLVPDAFVWGALLGA 503
           +A +L  +MP   D   W A++  
Sbjct: 383 KARELFYTMP-KRDLISWNAIIAG 405



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 145/283 (51%), Gaps = 4/283 (1%)

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
           V +L  C++   L    +IH  + +    + PD+F+ N LI+MY+KC ++  A +VF EM
Sbjct: 31  VALLQNCTRKRLLPEAKRIHAQMVEAW--VGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
           P ++V+SWNS+I+    +G  K+A  +F  MQ  G  P+  T + +L +C +   LE GK
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            +H+ + K     D  + N+L+ MY KCG + +A  VF  +  RDV SY  M+   A   
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
              + L +F +MS  GI PD+VT++ +L A +   +++EG K    ++    L       
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKLTVEEGLNSDIRVG 267

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
             +V +  R G +  A    K      D  V+ AL+ A   H 
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGTA-DRDVVVYNALIAALAQHG 309



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 6/202 (2%)

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
           H G  +E  D+    Q    + +  T V +L +C     L   K +H  + +  +  D F
Sbjct: 6   HCGPDRE--DVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIF 63

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           + N L++MY KC  +  A  VF+ M  RDV S+ ++I   A  G   KA  +F EM   G
Sbjct: 64  LSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAG 123

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
             P+++T++ +L+AC     +E G K H   +   Y   P+ ++   ++ ++G+ G +  
Sbjct: 124 FIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPR 181

Query: 481 ALDLIKSMPLVPDAFVWGALLG 502
           A  +   +    D   +  +LG
Sbjct: 182 ARQVFAGIS-PRDVVSYNTMLG 202


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 203/648 (31%), Positives = 356/648 (54%), Gaps = 78/648 (12%)

Query: 33  SSKSVGQLKQFHAFIIKTGS---PQHQTQILYDKIISLSRGNEIE-----NLSLQNP-QV 83
           + +SV Q  + HA ++ +G    P   + +L   +   +  + +       L  + P   
Sbjct: 8   TPRSVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCST 67

Query: 84  YLYNFIIQ-CL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQS-LRVGQQVH 140
           +L++  ++ C  +++ P   + LYR M   G+  + +T  ++ K C + ++ + + Q +H
Sbjct: 68  FLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLH 127

Query: 141 AYSMKTALLSNV-YVFNTLMRLYAVCGLIKAVHKLFH----------------------- 176
           A   +T L S V  V N ++ +Y   GL     + F                        
Sbjct: 128 AACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLL 187

Query: 177 ------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
                  R  P   R+++SWT LI  Y +     EA+  F  M    + PD + ++ +LS
Sbjct: 188 DDAWCLLRHSPA--RNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLS 245

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA------------ 278
           AC++L DL  G  +H+ + +    +S  + +  ALIDMY KCG+I  A            
Sbjct: 246 ACAQLKDLVFGRSLHKLVGEKGMLMSGKLVV--ALIDMYAKCGDIGRAWEVFDALGRGRR 303

Query: 279 --------------------RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
                               R +FD+M  +++V++NS+I G  H G+ +EAL +F +M+ 
Sbjct: 304 PQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRR 363

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
             L+ D+FT+V +L +CA++G L  G+ +H  +++  +  D ++G AL+DMY KCGR+++
Sbjct: 364 HDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEE 423

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  VF++M  RDV++++AMI GLA +G    AL+ F  M   G +P+ VT++ +L+ACSH
Sbjct: 424 ASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSH 483

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           + L++EG  +F +M  ++N++P  EHYGCM+DL GR+GL+ EA+DL+++MP+ P+A +W 
Sbjct: 484 SCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWA 543

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           ++L AC++H    LA    E+L++ EP+ D  Y+ + NIY    +W++A ++R+ M+ER 
Sbjct: 544 SILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERG 603

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           VKK  G S + V G+ ++F   D++HP+ +EI  +++EI  + K+ GY
Sbjct: 604 VKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGY 651


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/500 (39%), Positives = 287/500 (57%), Gaps = 24/500 (4%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL--IKAVHKLFHFRQH 180
           ++  C +++ L+   Q+HA  ++T L  + +  + L+   A+     +    ++F    H
Sbjct: 41  LIDQCSETKQLK---QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPH 97

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLS 239
           P    +L +W TLI+AY     P +++L F  M  Q+   PD      ++ A S+L +L 
Sbjct: 98  P----NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELF 153

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G   H  +      L  DVFI N+LI  Y KCG +    +VF   P ++VVSWNSMI  
Sbjct: 154 TGKAFHGMVIK--VLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITA 211

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G  +EAL++F+ M+   +KP+  T+V VL++CA     E G+WVH+Y+++N I   
Sbjct: 212 FVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXES 271

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG------------LAIHGKA 407
             + NA++DMY KCG ++ A  +F  M  +D+ S+T M+VG            LA+HG  
Sbjct: 272 LTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHG 331

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
             A+ +FS+M +  ++P+ VTF  +L ACSH GLVEEG   F  M  VY + P  +HY C
Sbjct: 332 KDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYAC 391

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           MVD+ GRAGL+ EA++LI+ MP+ P A VWGALLGAC IH  V LAE     L+  EP  
Sbjct: 392 MVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGN 451

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
            GAY+L++NIY+   +W     LRK M++  +KK PGCS +EV G  +EF  GD SHP  
Sbjct: 452 HGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSA 511

Query: 588 LEIYKLLDEIMHQSKNHGYI 607
            +IY  LDEI+ + +  GY+
Sbjct: 512 KKIYAKLDEIVARLETIGYV 531



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 213/389 (54%), Gaps = 30/389 (7%)

Query: 39  QLKQFHAFIIKTG---SPQHQTQILYDKII----SLSRGNEIENLSLQNPQVYLYNFIIQ 91
           QLKQ HA +++TG    P   ++++    +    SL    ++ +  + +P +Y +N +I+
Sbjct: 50  QLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFD-QIPHPNLYTWNTLIR 108

Query: 92  C-LSNANPLEAIALYREMLIKGL-LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
              S++NP +++ ++  ML +    P+ +T P+++KA  + + L  G+  H   +K  L 
Sbjct: 109 AYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLG 168

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
           S+V++ N+L+  YA CG +   +++F        +RD+VSW ++I A+V+   P EA+  
Sbjct: 169 SDVFILNSLIHFYAKCGELGLGYRVF----VNXPRRDVVSWNSMITAFVQGGCPEEALEL 224

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F +M   N++P+G+ +V VLSAC+K  D   G  +H YI  N    S  + + NA++DMY
Sbjct: 225 FQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXES--LTLSNAMLDMY 282

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF------------KEALDIFRRMQ 317
            KCG++  A+++FD+MP K++VSW +M+ G    G++            K+A+ +F +MQ
Sbjct: 283 TKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQ 342

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA-LVDMYAKCGRI 376
              +KP+  T   +L +C+++G +E G+     ++  +    G    A +VD+  + G +
Sbjct: 343 EDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLL 402

Query: 377 DQAFGVFRSMKCRDVYS-YTAMIVGLAIH 404
           ++A  +   M      S + A++    IH
Sbjct: 403 EEAVELIEKMPMAPAASVWGALLGACTIH 431



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 136/311 (43%), Gaps = 36/311 (11%)

Query: 22  LSLLHQSPRLESS-------KSVGQL------KQFHAFIIKT--GSPQHQTQIL---YDK 63
           L +LHQSP            K+  +L      K FH  +IK   GS       L   Y K
Sbjct: 124 LRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAK 183

Query: 64  IISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYV 123
              L  G  +     +   V   + I   +    P EA+ L++EM  + + PN  T+  V
Sbjct: 184 CGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGV 243

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           L AC +      G+ VH+Y  +  +  ++ + N ++ +Y  CG ++   +LF        
Sbjct: 244 LSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLF----DKMP 299

Query: 184 QRDLVSWTTLIQAYVKM------------DYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
           ++D+VSWTT++  Y K+             +  +AI  F  M +  ++P+ +    +L A
Sbjct: 300 EKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCA 359

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           CS +G +  G      + +  + + P V  +  ++D+  + G +  A ++ ++MP+    
Sbjct: 360 CSHVGLVEEGRTFFNQM-ELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAA 418

Query: 292 S-WNSMIAGLT 301
           S W +++   T
Sbjct: 419 SVWGALLGACT 429


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 300/528 (56%), Gaps = 8/528 (1%)

Query: 81  PQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           P V+++N II+  S  N   + + +YR M   G+ P+ +T PYVLKAC +     +   +
Sbjct: 117 PDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCII 176

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H   +K    S+V+V N L+ LYA CG I     +F    H    R +VSWT++I  Y +
Sbjct: 177 HGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYH----RTIVSWTSIISGYAQ 232

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
                EA+  F  M    ++PD + LV +L A + + DL  G  IH ++        P +
Sbjct: 233 NGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPAL 292

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            I  +L   Y KCG +  A+  FD+M   NV+ WN+MI+G    G  +EA+++F  M   
Sbjct: 293 LI--SLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISR 350

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            +KPD  T+   + + A +G LEL +W+  Y+ K++  +D F+  +L+DMYAKCG ++ A
Sbjct: 351 NIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFA 410

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             VF     +DV  ++AMI+G  +HG+ W+A++++  M Q G+ P++VTF+G+L+AC+H+
Sbjct: 411 RRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHS 470

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLV+EG + F  M + + + P+ EHY C+VDL GRAG + EA   I  +P+ P   VWGA
Sbjct: 471 GLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGA 529

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           LL ACKI+  V L E     L   +P   G Y+ ++N+Y+S   W     +R  M+E+ +
Sbjct: 530 LLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGL 589

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            K  G S++E+ G+   F  GDKSHP   EI+  L  +  + K  G++
Sbjct: 590 NKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFV 637



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 126/259 (48%), Gaps = 2/259 (0%)

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           L  + F+   L++     G I  ARK+FDE    +V  WN++I   +    +++ ++++R
Sbjct: 84  LQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYR 143

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            M+  G+ PD FT   VL +C  +    L   +H  + K    +D F+ N LV +YAKCG
Sbjct: 144 WMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCG 203

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            I  A  VF  +  R + S+T++I G A +GKA +AL +FS+M   G++PD +  V +L 
Sbjct: 204 HIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILR 263

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           A +    +E+G +          L+ +      +   + + GL+  A      M    + 
Sbjct: 264 AYTDVDDLEQG-RSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMK-TTNV 321

Query: 495 FVWGALLGACKIHAKVELA 513
            +W A++     +   E A
Sbjct: 322 IMWNAMISGYAKNGHAEEA 340



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 38/240 (15%)

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           +H  L  + +  +GF+   LV+  +  G+I  A  +F      DV+ + A+I   + +  
Sbjct: 75  IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNM 134

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
               ++++  M   G+ PD  TF  VL AC+            LD      +  Q   YG
Sbjct: 135 YRDTVEMYRWMRWTGVHPDGFTFPYVLKACT----------ELLDFGLSCIIHGQIIKYG 184

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
              D+F + GL+                    AL   C     + +A++V + L      
Sbjct: 185 FGSDVFVQNGLV--------------------ALYAKC---GHIGVAKVVFDGLYH---R 218

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK--TPGCSLVEVYGEFYEFRKGDKSH 584
              ++  + + Y+   +  EAL++  +M+   VK       S++  Y +  +  +G   H
Sbjct: 219 TIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIH 278


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/495 (36%), Positives = 284/495 (57%), Gaps = 7/495 (1%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L P        + AC QS++L   +++H +   +    + ++ N+L+ LY  CG +   H
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
           K+F        ++D+VSWT+LI  Y + D P EAI     M +   +P+G     +L A 
Sbjct: 107 KVFD----KMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAA 162

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
               D  +G +IH       ++   DV++ +AL+DMY +CG +  A  VFD++  KN VS
Sbjct: 163 GAYADSGIGGQIHALAVKCDWH--EDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS 220

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WN++I+G   +G  + AL +F  MQ  G +   FT   + +  A IG LE GKWVH ++ 
Sbjct: 221 WNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMV 280

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K+      F+GN ++DMYAK G +  A  VF  +  +D+ ++ +M+   A +G   +A+ 
Sbjct: 281 KSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVS 340

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
            F EM + GI  +++TF+ +L+ACSH GLV+EG KH+ DM + YNL+P+ EHY  +VDL 
Sbjct: 341 HFEEMRKSGIYLNQITFLCILTACSHGGLVKEG-KHYFDMIKEYNLEPEIEHYVTVVDLL 399

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           GRAGL+  AL  I  MP+ P A VWGALL AC++H   ++ +   +++ + +P+  G  +
Sbjct: 400 GRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPV 459

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           L+ NIY+S   W  A ++RK MK   VKK P CS VE+    + F   D +HP+  EIYK
Sbjct: 460 LLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYK 519

Query: 593 LLDEIMHQSKNHGYI 607
           + DEI  + +  GY+
Sbjct: 520 MWDEISMKIRKEGYV 534



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 137/286 (47%), Gaps = 6/286 (2%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           LY K  S+   +++ +   +   V   + I     N  P EAI L   ML     PN +T
Sbjct: 95  LYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFT 154

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
              +LKA        +G Q+HA ++K     +VYV + L+ +YA CG +     +F    
Sbjct: 155 FASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVF---- 210

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
                ++ VSW  LI  + +      A++ F +M +            + S  + +G L 
Sbjct: 211 DKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALE 270

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G  +H ++  +   L+   F+ N ++DMY K G++  ARKVF+ +  K++V+WNSM+  
Sbjct: 271 QGKWVHAHMVKSRQKLT--AFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTA 328

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
               G  KEA+  F  M+  G+  +  T +C+L +C++ G ++ GK
Sbjct: 329 FAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGK 374


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/495 (36%), Positives = 287/495 (57%), Gaps = 7/495 (1%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L P        + AC QS++L   +++HA+   +    + ++ N+L+ LY  CG +   H
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
           K+F   ++    +D+VSWT+LI  Y + D P EAI     M +   +P+G     +L A 
Sbjct: 107 KVFDKMRN----KDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAV 162

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
               D  +G +IH       ++   DV++ +AL+DMY +CG +  A  VFD++  KN VS
Sbjct: 163 GAYADSGIGGQIHALAVKCDWH--EDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS 220

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WN++I+G   +G  + AL +F  MQ  G +   FT   + ++ A IG LE GKWVH ++ 
Sbjct: 221 WNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMI 280

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K+      F+GN ++DMYAK G +  A  VF  +  +D+ ++ +M+   A +G   +A+ 
Sbjct: 281 KSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVS 340

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
            F EM + GI  ++++F+ +L+ACSH GLV+EG KH+ DM + YNL+P+ EHY  +VDL 
Sbjct: 341 HFEEMRKSGIYLNQISFLCILTACSHGGLVKEG-KHYFDMIKEYNLEPEIEHYVTVVDLL 399

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           GRAGL+  AL  I  MP+ P A VWGALL AC++H   ++ +   +++ + +P+  G  +
Sbjct: 400 GRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPV 459

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           L+ NIY+S   W  A ++RK MK   VKK P CS VE+    + F   D +HP+  EIYK
Sbjct: 460 LLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYK 519

Query: 593 LLDEIMHQSKNHGYI 607
           + DEI  + +  GY+
Sbjct: 520 MWDEISMKIRKEGYV 534



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 137/286 (47%), Gaps = 6/286 (2%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           LY K  S+   +++ +       V   + I     N  P EAI L   ML     PN +T
Sbjct: 95  LYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFT 154

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
              +LKA        +G Q+HA ++K     +VYV + L+ +YA CG +     +F    
Sbjct: 155 FASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVF---- 210

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
                ++ VSW  LI  + +      A++ F +M +            + SA + +G L 
Sbjct: 211 DKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALE 270

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G  +H ++  +   L+   F+ N ++DMY K G++  ARKVF+ +  K++V+WNSM+  
Sbjct: 271 QGKWVHAHMIKSRQKLT--AFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTA 328

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
               G  KEA+  F  M+  G+  +  + +C+L +C++ G ++ GK
Sbjct: 329 FAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGK 374


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 213/604 (35%), Positives = 336/604 (55%), Gaps = 43/604 (7%)

Query: 20  QQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS-------LSRGNE 72
           ++L  LH+   L+S      + Q HA ++K     HQ   +  K+I+       L+    
Sbjct: 23  EKLCDLHKCTNLDS------VNQIHAQVLKAN--LHQDLFVAPKLIAAFSLCRHLASAVN 74

Query: 73  IENLSLQNPQVYLYNFIIQCLSNANPLEAIAL--YREMLIKGLLPNTYTLPYVLKACWQS 130
           + N  + +P V+LYN II+  ++ +   ++    + +M   GL P+ +T P++LKAC   
Sbjct: 75  VFN-HVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGP 133

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG--LIKAVHKLFHFRQHPQAQRDLV 188
            SL + + +HA+  K     +++V N+L+  Y+ CG   +     LF   +    +RD+V
Sbjct: 134 SSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAME----ERDVV 189

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV--IVLSACSKLGDLSLGIKIHR 246
           +W ++I   V+      A   F +M      PD  ++    +L   +K G++    ++  
Sbjct: 190 TWNSMIGGLVRCGELQGACKLFDEM------PDRDMVSWNTMLDGYAKAGEMDTAFEL-- 241

Query: 247 YITDNHFNLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
                 F   P  ++   + ++  Y K G++  AR +FD  PVKNVV W ++IAG   +G
Sbjct: 242 ------FERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKG 295

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
             +EA +++ +M+  G++PDD  L+ +L +CA  G L LGK +H  + +        + N
Sbjct: 296 LAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLN 355

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423
           A +DMYAKCG +D AF VF  M  + DV S+ +MI G A+HG   KAL++FS M Q G E
Sbjct: 356 AFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFE 415

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           PD  TFVG+L AC+HAGLV EG K+F  M +VY + PQ EHYGCM+DL GR G ++EA  
Sbjct: 416 PDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFM 475

Query: 484 LIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543
           L++SMP+ P+A + G LL AC++H  V+LA  V E L + EP   G Y L++NIY+    
Sbjct: 476 LLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGD 535

Query: 544 WKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603
           W     +R +MK    +K  G S +EV  E +EF   D+SHPK+ +IY+++D ++   + 
Sbjct: 536 WMNVANVRLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYQMIDRLVQDLRQ 595

Query: 604 HGYI 607
            GY+
Sbjct: 596 VGYV 599


>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
 gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
 gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
          Length = 530

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 190/519 (36%), Positives = 311/519 (59%), Gaps = 40/519 (7%)

Query: 87  NFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           N +I+ L+        +A+Y ++  +GL+ +++T P+VL+A    +    G++ HA ++K
Sbjct: 18  NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVK 77

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
           T    + Y  ++LM +Y + G +    K+F   + P   R LV W  +++ Y++  + + 
Sbjct: 78  TGFRWDAYTGSSLMEMYTMLGRVDIARKVFD--EMPS--RALVLWNMMVRCYIRCGWYSA 133

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           A+     M ++ + PD + LV  ++ACS+  DLSLG +IH Y+ DN F    ++ + NAL
Sbjct: 134 AVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYM-DNVFGF--NLPVANAL 190

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ-------------------- 305
           +DMY K   +  A K+F++MP +N++SW  +++G    GQ                    
Sbjct: 191 LDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWT 250

Query: 306 -----------FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
                      F+EAL +FR MQ   ++PD FT+V +L  CAN+G L+ G+W+H Y ++ 
Sbjct: 251 AMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQR 310

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            +  D  +G AL+DMY+KCG I+++  VF  M+ RD  ++TA+I GLA +G+A +AL++F
Sbjct: 311 KMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELF 370

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            +M +  ++PD VTF+GVLSAC H GLV+EG K F  M  VY ++P+ EHY C+V+L GR
Sbjct: 371 QDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGR 430

Query: 475 AGLIREALDLIKSMPLVPDAF-VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
           AGL+ EA  LI  +P+  DA  ++GALL ACK H  VE++E + + +   + +     +L
Sbjct: 431 AGLLDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLL 490

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           M+N+Y++ +RW++ +++R KM    VKK  GCSL+EV G
Sbjct: 491 MSNVYATASRWEDVIRVRGKMAHPTVKKNAGCSLIEVKG 529


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/514 (37%), Positives = 303/514 (58%), Gaps = 6/514 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    EA+ ++ EM  K +  ++ T+  +L  C Q   +  G  +H Y++K  L  +++V
Sbjct: 218 NGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFV 277

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ +YA  G +++   +F+        RD+VSW +L+ A+ +   P  A+  +  M 
Sbjct: 278 CNALINMYAKFGELRSAETIFN----QMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMH 333

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              + PD + LV + S  ++LG+      IH ++T   + L  D+ + NA+IDMY K G 
Sbjct: 334 SIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLH-DIALGNAIIDMYAKLGF 392

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLN 333
           I SARKVF+ +PVK+V+SWNS+I G +  G   EA+D++  M+   G  P+  T V +L 
Sbjct: 393 IDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILT 452

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           + + +G L+ G   H  L KN +  D F+   LVDMY KCG++  A  +F  +  +   S
Sbjct: 453 AHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVS 512

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           + A+I    +HG   KA+ +F EM   G++PD +TFV +LSACSH+GLV+EG   F  M 
Sbjct: 513 WNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQ 572

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
             Y ++P  +HYGCMVDLFGRAG + +A + +K+MP+ PD  VWGALLGAC+IH  VEL 
Sbjct: 573 ETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELV 632

Query: 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
             V ++L++ E E  G Y+L++NIY+    W+   ++R   ++R +KKTPG S +EV  +
Sbjct: 633 RTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKK 692

Query: 574 FYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              F  G+++HPK  EIY  L  +  + K+ GY+
Sbjct: 693 IDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYV 726



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 179/371 (48%), Gaps = 13/371 (3%)

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           + + +Q+HA  + +    ++++   L+  YA  G I   H    F Q     +D+ +W +
Sbjct: 56  VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIP--HARLTFDQ--IQTKDVYTWNS 111

Query: 193 LIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
           +I AY ++ +   A+  F +    + L+ D      V+ AC  L D   G K+H  +   
Sbjct: 112 MISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKL 168

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
            F    DV+I  + I  Y + G +  A  +FD M ++++ +WN+MI+G    G+  EAL+
Sbjct: 169 GFEC--DVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALE 226

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           +F  M+   +  D  T+  +L  C  +  +  G  +H Y  K  +  D F+ NAL++MYA
Sbjct: 227 VFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYA 286

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           K G +  A  +F  MK RD+ S+ +++     + K   AL ++++M  +G+ PD +T V 
Sbjct: 287 KFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVS 346

Query: 432 VLSACSHAG-LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
           + S  +  G  +     H     R + L         ++D++ + G I  A  + + +P 
Sbjct: 347 LASVAAELGNFLSSRSIHGFVTRRCWFLH-DIALGNAIIDMYAKLGFIDSARKVFEGLP- 404

Query: 491 VPDAFVWGALL 501
           V D   W +L+
Sbjct: 405 VKDVISWNSLI 415


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 206/568 (36%), Positives = 310/568 (54%), Gaps = 62/568 (10%)

Query: 9   SGSRYNDINTFQQLSLLHQSP---RLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII 65
           S  + N IN     S +  +P    LE  KS+ QLKQ  + ++ TG  +        ++I
Sbjct: 32  SPHKENPINWNTNHSFVLSNPFLSLLEKCKSISQLKQIQSQMVLTGLIE--DGFASSRLI 89

Query: 66  SLSRGNEIENL--------SLQNPQVYLYNFIIQC-LSNANPLEAIALYREML-IKGLLP 115
           +    +E  +L        + +NP  + +N  I+  L + NP EA+ LY+ +L   G  P
Sbjct: 90  AFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKP 149

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           + YT P + KAC +   +R+G ++  + +     S+++V N ++ L   CG +    K+F
Sbjct: 150 DNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMF 209

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
                    RDLVSW ++I  Y                                      
Sbjct: 210 ----DKSCVRDLVSWNSMINGYC------------------------------------- 228

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
           G+L    K+   +T+        +     ++  Y + G +  A K+FDEMP K+VV WN+
Sbjct: 229 GNLESARKLFDSMTNK------TMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNA 282

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           MI G  H  + KEAL +F  MQ + + PD+ T+V  L++C+ +G L++G W+H Y++K+ 
Sbjct: 283 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHE 342

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           ++ +  +G AL+DMYAKCG+I +A  VF+ +  R+  ++TA+I GLA+HG A  A+  FS
Sbjct: 343 LSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFS 402

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           EM    + PDEVTF+G+LSAC H GLVEEG K+F  MS  +NL P+ +HY CMVDL GRA
Sbjct: 403 EMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRA 462

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
           GL+ EA +LIKSMP+  DA VWGAL  AC+IH  V + E     L++ +P   G Y+L+ 
Sbjct: 463 GLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLA 522

Query: 536 NIYSSKNRWKEALKLRKKMKERKVKKTP 563
           N+Y     WKEA K RK M++R V+KTP
Sbjct: 523 NMYGEAEMWKEAGKARKLMRQRGVEKTP 550


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/516 (38%), Positives = 300/516 (58%), Gaps = 7/516 (1%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N N  +A+ +  EM ++G+  ++ T+  +L  C Q   +     +H Y +K  L   +
Sbjct: 249 IQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFEL 308

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           +V N L+ +YA  G +    K+F         RD+VSW ++I AY + D P  A   FF 
Sbjct: 309 FVSNALINMYAKFGNLGDAQKVFQ----QMFLRDVVSWNSIIAAYEQNDDPVTARGFFFK 364

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M    L PD + LV + S  ++  D      +H +I    + L   V I NA++DMY K 
Sbjct: 365 MQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGW-LMEAVVIGNAVMDMYAKL 423

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCV 331
           G I SA KVF+ +PVK+VVSWN++I+G T  G   EA++++R M+    +K +  T V +
Sbjct: 424 GVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSI 483

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L + A++G L+ G  +H +L K +++ D F+G  L+D+Y KCGR+  A  +F  +     
Sbjct: 484 LAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESS 543

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
             + A+I    IHG   KAL +F EM   G++PD VTF+ +LSACSH+GLV+EG K F  
Sbjct: 544 VPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEG-KWFFH 602

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           + + Y ++P  +HYGCMVDL GRAG +  A D IK MPL PDA +WGALLGAC+IH  +E
Sbjct: 603 LMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIE 662

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           L +   + L   + E  G Y+L++NIY++  +W+   K+R   +ER +KKTPG S +EV 
Sbjct: 663 LGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVN 722

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
                F  G++SHPK  EIY  L  +  + K+ GYI
Sbjct: 723 RRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYI 758



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 146/484 (30%), Positives = 249/484 (51%), Gaps = 25/484 (5%)

Query: 41  KQFHAFIIKTGSPQH-----QTQILYDKI--ISLSRGNEIENLSLQNPQVYLYNFIIQC- 92
           K+ HA ++ +G  Q      +   LY  +  +SLSRG   +   +Q   VY +N +I   
Sbjct: 93  KRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQ---IQRKDVYTWNSMISAY 149

Query: 93  LSNANPLEAI-ALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
           + N +  EAI   Y+ +L+     + YT P VLKAC   Q+L  G+++H +  K     +
Sbjct: 150 VRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC---QTLVDGRKIHCWVFKLGFQWD 206

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
           V+V  +L+ +Y+  G +     LF         RD+ SW  +I   ++     +A+    
Sbjct: 207 VFVAASLIHMYSRFGFVGIARSLF----DDMPFRDMGSWNAMISGLIQNGNAAQALDVLD 262

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
           +M    +  D + +  +L  C++LGD+S    IH Y+  +   L  ++F+ NALI+MY K
Sbjct: 263 EMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKH--GLEFELFVSNALINMYAK 320

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
            GN+  A+KVF +M +++VVSWNS+IA          A   F +MQ  GL+PD  TLV +
Sbjct: 321 FGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSL 380

Query: 332 LNSCANIGWLELGKWVHTY-LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
            +  A     +  + VH + + +  +     IGNA++DMYAK G ID A  VF  +  +D
Sbjct: 381 ASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKD 440

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQV-GIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           V S+  +I G   +G A +A++++  M +   I+ ++ T+V +L+A +H G +++G +  
Sbjct: 441 VVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIH 500

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
             + +  NL        C++DL+G+ G + +A+ L   +P    +  W A++    IH  
Sbjct: 501 GHLIKT-NLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPR-ESSVPWNAIISCHGIHGH 558

Query: 510 VELA 513
            E A
Sbjct: 559 GEKA 562



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 183/372 (49%), Gaps = 15/372 (4%)

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR-DLVSWTTL 193
           + +++HA  + +  + + ++   L+ LYA  G +      F      Q QR D+ +W ++
Sbjct: 91  LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTF-----DQIQRKDVYTWNSM 145

Query: 194 IQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           I AYV+  +  EAI  F+ +      + D      VL AC  L D   G KIH ++    
Sbjct: 146 ISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLG 202

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           F    DVF+  +LI MY + G +  AR +FD+MP +++ SWN+MI+GL   G   +ALD+
Sbjct: 203 FQW--DVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 260

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
              M+  G+  D  T+  +L  CA +G +     +H Y+ K+ +  + F+ NAL++MYAK
Sbjct: 261 LDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAK 320

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
            G +  A  VF+ M  RDV S+ ++I     +     A   F +M   G+EPD +T V +
Sbjct: 321 FGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSL 380

Query: 433 LSACSHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
            S  + +   +     H   M R + ++        M D++ + G+I  A  +   +P V
Sbjct: 381 ASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVM-DMYAKLGVIDSAHKVFNLIP-V 438

Query: 492 PDAFVWGALLGA 503
            D   W  L+  
Sbjct: 439 KDVVSWNTLISG 450


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/588 (34%), Positives = 333/588 (56%), Gaps = 46/588 (7%)

Query: 22  LSLLHQSPR-LESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIIS---LSRGNEIE 74
            S   +S R + +S S+  +K+ HA +++      P   ++++    +S   L + + + 
Sbjct: 11  FSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVF 70

Query: 75  NLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133
           N  +Q P + ++N +I  LS ++ P +AI  Y  M  KG+  +  T  ++ K+C +   +
Sbjct: 71  N-QIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDV 129

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
           R GQ V  +SMK    S ++V N L+ +Y   G +    K+F        +RD+VSW ++
Sbjct: 130 RQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFD----GMLERDVVSWNSI 185

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I  Y + +   + +  F +M   N+R D + ++  +SA   L +  +G  + +YI D H 
Sbjct: 186 ICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYI-DEH- 243

Query: 254 NLSPDVFIHNALIDMY-------------------------------LKCGNIPSARKVF 282
            +  D+++ N LIDMY                                K GN+ +A+K+F
Sbjct: 244 GVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLF 303

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
           +EMP ++V+SW SMI G +   Q  EA+ +F+ M    +KPD+ T+   L++CA++G L+
Sbjct: 304 NEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLD 363

Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
            G+ VH Y+ K+ I +D F+GN+L+DMY KCG +++A  VF  MK RD  S+T++I GLA
Sbjct: 364 AGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLA 423

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
           ++G A  AL++F +M + GI P   TFVGVL AC+H GLV++G +HF  M   Y L P+ 
Sbjct: 424 VNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEM 483

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
           +HYGC+VDL  R+G +  A + IK MP+VPD  +W  LL ACK+H  + LAEIV + L+ 
Sbjct: 484 KHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLV 543

Query: 523 FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
            +P  +G Y+L ++ Y+  +RW + +K+RK M+   ++K    S +EV
Sbjct: 544 LDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEV 591


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 202/540 (37%), Positives = 301/540 (55%), Gaps = 16/540 (2%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           S+  P    +N ++   +  +  E ++  + +M  +  L N Y+    L AC     L +
Sbjct: 106 SMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNM 165

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G QVHA   K+   ++VY+ + L+ +Y+ CG +    ++F        +R+LV+W +LI 
Sbjct: 166 GTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFS----GMIERNLVTWNSLIT 221

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFN 254
            Y +    +EA+  F  M  + L PD + L  V+SAC+ L  L  G++IH R +  N F 
Sbjct: 222 CYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFR 281

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
              D+ + NAL+DMY KC  +  AR+VFD M ++NVVS  SM++G       K A  +F 
Sbjct: 282 --DDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFS 339

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGK-------WVHTYLDKNHINTDGFIGNALV 367
           +M    +   +  +     +  N   L L +       W   Y   N + +D F+GN+L+
Sbjct: 340 KMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLI 399

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           DMY KCG I+    VF  MK RD  S+ A+IVG A +G   +AL IF +M   G +PD V
Sbjct: 400 DMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHV 459

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           T +GVL ACSHAGLVEEG  +F  M   + L P  +HY CMVDL GRAG + EA +LI++
Sbjct: 460 TMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEA 518

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
           MP+ PDA VWG+LL ACK+H  +E+ +   E L+  +P   G Y+L++N+Y+   RW + 
Sbjct: 519 MPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDV 578

Query: 548 LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +++RK M+++ V K PGCS +EV    + F   DKSHP   +IY +L  +  Q K  GYI
Sbjct: 579 VRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYI 638



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 216/435 (49%), Gaps = 52/435 (11%)

Query: 109 LIKGL-LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           L++ L LPN+     +L +C +S+S R  + VHA  + T     +++ N L+ +Y  C  
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65

Query: 168 IKAVHKLFHFRQHPQ-----------------------------AQRDLVSWTTLIQAYV 198
           +    KLF   + PQ                              + D  SW +++  + 
Sbjct: 66  LDDARKLFD--RMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFA 123

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           + D   E++  F  M + +   +       LSAC+ L DL++G ++H  ++ + +  S D
Sbjct: 124 QHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRY--STD 181

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           V++ +ALIDMY KCG++  A +VF  M  +N+V+WNS+I      G   EAL++F RM  
Sbjct: 182 VYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMD 241

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRID 377
            GL+PD+ TL  V+++CA++  L+ G  +H  + K N    D  +GNALVDMYAKC +++
Sbjct: 242 SGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVN 301

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
           +A  VF  M  R+V S T+M+ G A       A  +FS+M+Q  +    V++  +++  +
Sbjct: 302 EARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGYT 357

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYG-----------CMVDLFGRAGLIREALDLIK 486
             G  EE  + F  + R  ++ P    +G            ++D++ + G I +   + +
Sbjct: 358 QNGENEEALRLFRLLKR-ESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFE 416

Query: 487 SMPLVPDAFVWGALL 501
            M    D   W A++
Sbjct: 417 KMK-ERDCVSWNAII 430



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 166/354 (46%), Gaps = 45/354 (12%)

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV------------- 290
           +H  I    F++  ++FI N LID+Y KC  +  ARK+FD MP +N              
Sbjct: 37  VHARILMTQFSM--EIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKS 94

Query: 291 ------------------VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
                              SWNSM++G     +F+E+L+ F +M       ++++    L
Sbjct: 95  GFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSAL 154

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           ++CA +  L +G  VH  + K+  +TD ++G+AL+DMY+KCG +  A  VF  M  R++ 
Sbjct: 155 SACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLV 214

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           ++ ++I     +G A +AL++F  M   G+EPDEVT   V+SAC+    ++EG +    +
Sbjct: 215 TWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARV 274

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL----VPDAFVWGALLGACKIHA 508
            +    +        +VD++ +   + EA  +   M +       + V G    A    A
Sbjct: 275 VKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAA 334

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           +   +++   N+V +     G        Y+     +EAL+L + +K   +  T
Sbjct: 335 RFMFSKMTQRNVVSWNALIAG--------YTQNGENEEALRLFRLLKRESIWPT 380



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 189/384 (49%), Gaps = 32/384 (8%)

Query: 42  QFHAFIIKTGSPQHQTQI--------LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCL 93
           Q HA + K+   ++ T +        +Y K  S++   E+ +  ++   V  +N +I C 
Sbjct: 168 QVHALVSKS---RYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLV-TWNSLITCY 223

Query: 94  SNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
               P  EA+ ++  M+  GL P+  TL  V+ AC    +L+ G Q+HA  +KT    + 
Sbjct: 224 EQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDD 283

Query: 153 YVF-NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
            V  N L+ +YA C  +    ++F       + R++VS T+++  Y +      A   F 
Sbjct: 284 LVLGNALVDMYAKCSKVNEARRVF----DRMSIRNVVSETSMVSGYARAASVKAARFMFS 339

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY-----ITDNHFN----LSPDVFIH 262
            M Q N+    +    +++  ++ G+    +++ R      I   H+     L  D+F+ 
Sbjct: 340 KMTQRNV----VSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVG 395

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           N+LIDMY+KCG+I    +VF++M  ++ VSWN++I G    G   EAL IFR+M   G K
Sbjct: 396 NSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEK 455

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD  T++ VL +C++ G +E G+     ++++ +         +VD+  + G +++A  +
Sbjct: 456 PDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNL 515

Query: 383 FRSMKCR-DVYSYTAMIVGLAIHG 405
             +M    D   + +++    +HG
Sbjct: 516 IEAMPVNPDAVVWGSLLAACKVHG 539


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/481 (39%), Positives = 293/481 (60%), Gaps = 18/481 (3%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T P+V+KAC +S     G  VH + +K+    + Y+ N+L+ LYA    + A  +LF   
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL- 60

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
               + RD+VSW  +I  YVK            +M    +  D M+   V+S  + +   
Sbjct: 61  ---CSDRDVVSWNAMIDGYVKRG----------EMGHTRMVFDRMVCRDVISWNTIINGY 107

Query: 239 SLGIKIHRYITDNHFNLSPD--VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           ++  KI        F+  P+  +   N+++  ++KCGN+  A  +F EMP ++VVSWNSM
Sbjct: 108 AIVGKIDE--AKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSM 165

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           +A     G+  EAL +F +M+ +G+KP + T+V +L++CA++G L+ G  +HTY++ N I
Sbjct: 166 LACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRI 225

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
             +  +G ALVDMYAKCG+I  A  VF +M+ +DV ++  +I G+AIHG   +A  +F E
Sbjct: 226 EVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKE 285

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M +  +EP+++TFV +LSACSHAG+V+EG K    MS  Y ++P+ EHY C++DL  RAG
Sbjct: 286 MKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAG 345

Query: 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536
           L+ EA++LI +MP+ P+    GALLG C+IH   EL E+V + L+  +P   G YIL++N
Sbjct: 346 LLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSN 405

Query: 537 IYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDE 596
           IY++  +W +A K+R  MK   + K PG S++E+ G  + F  GD SHP++ +IY  L+E
Sbjct: 406 IYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNE 465

Query: 597 I 597
           I
Sbjct: 466 I 466



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 121/244 (49%), Gaps = 9/244 (3%)

Query: 82  QVYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V  +N ++ C +    P EA+AL+ +M   G+ P   T+  +L AC    +L  G  +H
Sbjct: 158 DVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLH 217

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            Y     +  N  V   L+ +YA CG I    ++F+  +     +D+++W T+I      
Sbjct: 218 TYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME----SKDVLAWNTIIAGMAIH 273

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
            +  EA   F +M +A++ P+ +  V +LSACS  G +  G K+   ++ + + + P V 
Sbjct: 274 GHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSS-YGIEPKVE 332

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            ++ +ID+  + G +  A ++   MP++ N  +  +++ G    G F+    + +R+  +
Sbjct: 333 HYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRL--I 390

Query: 320 GLKP 323
            L+P
Sbjct: 391 NLQP 394


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 194/505 (38%), Positives = 292/505 (57%), Gaps = 39/505 (7%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +QVHA+  +  L    +V   L+R      +    +    F+Q       L  WT LI+ 
Sbjct: 56  KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFL--WTALIRG 113

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNL 255
           Y       E++L +  M +  + P       +L ACS   D++LG ++H + I    F  
Sbjct: 114 YALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFG- 172

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEM------------------------------ 285
             D+++ N LIDMY+KCG +    +VFDEM                              
Sbjct: 173 -SDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDG 231

Query: 286 -PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
            P+K++V+W +M+ G     + +EAL++F RMQ  G+K D+ TLV V+++CA +G  +  
Sbjct: 232 LPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYA 291

Query: 345 KWVHTYLDKNHI--NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
            WV    +++     ++  +G+AL+DMYAKCG ++ A+ VF  M+ R+VYSY++MIVG A
Sbjct: 292 NWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFA 351

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
           +HG A  A+++F EM +  I+P+ VTF+GVL+ACSHAG+VE+G + F  M   + + P  
Sbjct: 352 MHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSE 411

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
           +HY CMVDL GRAG + EAL+L+K MP+ P   VWGALLGAC+IH   ++A+I   +L  
Sbjct: 412 DHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFE 471

Query: 523 FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE-VYGEFYEFRKGD 581
            EP G G YIL++NIY+S  RW +  K+RK M+ + +KK PGCS VE   G  +EF  GD
Sbjct: 472 LEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGD 531

Query: 582 KSHPKTLEIYKLLDEIMHQSKNHGY 606
            SHPK+ EI + L++++ + K  GY
Sbjct: 532 MSHPKSREIKQALEDLLDRLKYLGY 556



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 198/423 (46%), Gaps = 61/423 (14%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQ------HQTQILYDKIISLSRGNEIENLSLQNPQVY 84
           L     + Q+KQ HA I + G  Q         + L    + +     +    ++ P  +
Sbjct: 46  LHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPF 105

Query: 85  LYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           L+  +I+  +   P +E++ LY  M  +G+ P ++T   +LKAC  +  + +G+QVH  +
Sbjct: 106 LWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQT 165

Query: 144 -MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD- 201
            +     S++YV NTL+ +Y  CG +   H++F         RD++SWT+LI AY K+  
Sbjct: 166 ILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVF----DEMLDRDVISWTSLIVAYAKVGN 221

Query: 202 ------------------------------YPTEAILSFFDMCQANLRPDGMILVIVLSA 231
                                          P EA+  F  M  A ++ D + LV V+SA
Sbjct: 222 MEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISA 281

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           C++LG       +      + F  + +V + +ALIDMY KCG++  A KVF+ M  +NV 
Sbjct: 282 CAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVY 341

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           S++SMI G    G    A+++F  M    +KP+  T + VL +C++ G +E G+ +   +
Sbjct: 342 SYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMM 401

Query: 352 DKNH---INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
           ++ H    + D +    +VD+  + GR+++A  + + M              +  HG  W
Sbjct: 402 EECHGVAPSEDHYA--CMVDLLGRAGRLEEALNLVKMMP-------------MNPHGGVW 446

Query: 409 KAL 411
            AL
Sbjct: 447 GAL 449


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 184/489 (37%), Positives = 300/489 (61%), Gaps = 13/489 (2%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+AC    +L    Q+H + +K  L +N  V   L +  ++  LI A      F    +
Sbjct: 35  LLQAC---NALPKLTQIHTHILKLGLHNNPLV---LTKFASISSLIHATDYAASFLFSAE 88

Query: 183 AQR---DLVSWTTLIQAYVKMDYPTEAILSFFD-MCQANLRPDGMILVIVLSACSKLGDL 238
           A     D   + TLI+AY +  +  +  L+ +  M    + P+      VL AC+ L  L
Sbjct: 89  ADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVL 148

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC-GNIPSARKVFDEMPVKNVVSWNSMI 297
           +LG  +H  +    F    D+ + N ++ MY  C G I SARKVFDEMP  + V+W++MI
Sbjct: 149 NLGQTVHGSVVK--FGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMI 206

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
            G    G+  EA+ +FR MQ   + PD+ T+V +L++C ++G LELGKW+  Y++++ I+
Sbjct: 207 GGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIH 266

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
               + NAL+DM+AKCG I +A  +FR+M  + + S+T++IVG+A+HG+  +A  +F EM
Sbjct: 267 KPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEM 326

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
           +  G+ PD+V F+G+LSACSH+GLVE G ++F  M + Y L P+ EHYGCMVD++ R GL
Sbjct: 327 TSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGL 386

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
           ++EAL+ +++MP+ P+  +   L+ AC+ H + +L E + + L++ EP  +  Y+L++NI
Sbjct: 387 VKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNI 446

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           Y+    W++  K+R+ M+ + +KK PG +++E+  E YEF  GDKSH +  EIY+++DE+
Sbjct: 447 YAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEM 506

Query: 598 MHQSKNHGY 606
             + K  GY
Sbjct: 507 GREMKKSGY 515



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 200/370 (54%), Gaps = 22/370 (5%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQ-------NPQV 83
           L++  ++ +L Q H  I+K G   H   ++  K  S+S      + +         + ++
Sbjct: 36  LQACNALPKLTQIHTHILKLG--LHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRL 93

Query: 84  Y---LYNFIIQCLSNA--NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           Y   L+N +I+  +    +  +A+ALY  ML   +LPN +T P+VLKAC   + L +GQ 
Sbjct: 94  YDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQT 153

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVC-GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           VH   +K     +++V NT++ +Y+ C G I +  K+F   + P++  D V+W+ +I  Y
Sbjct: 154 VHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFD--EMPKS--DSVTWSAMIGGY 209

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            ++   TEA+  F +M  A + PD + +V +LSAC+ LG L LG  I  YI + H    P
Sbjct: 210 ARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYI-ERHEIHKP 268

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
            V + NALIDM+ KCG+I  A K+F  M  K +VSW S+I G+   G+ +EA  +F  M 
Sbjct: 269 -VEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMT 327

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGK-WVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
             G+ PDD   + +L++C++ G +E G+ +  + + K  +         +VDMY + G +
Sbjct: 328 SSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLV 387

Query: 377 DQAFGVFRSM 386
            +A    R+M
Sbjct: 388 KEALEFVRNM 397


>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
          Length = 529

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 196/493 (39%), Positives = 288/493 (58%), Gaps = 17/493 (3%)

Query: 84  YLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           Y +N II+  L   +P EAI +Y  +  KGL  +TYTL +V+KAC     +  G+Q+H  
Sbjct: 45  YTWNTIIRGYLEGNDPEEAILIYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQ 104

Query: 143 SMKTALLSNVYVFNTLMRLYAV----CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
             K      V +   L+ +Y +    CGL +       F + PQ  RDLV W  LI AY 
Sbjct: 105 IFKLGFEFEVIIQTALLSMYGLFDEDCGLQQI------FDEMPQ--RDLVMWNALIAAYA 156

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
             + P +     +DM  +N++P+G+  V +LS CS L  L  G  +H Y+T N   +  D
Sbjct: 157 HGNCPYKVREVSYDMVSSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNL--IEXD 214

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           VF+HNALID+Y KCG+I  A +VF  MP++NVVSW S+I G +      EAL  F++M+ 
Sbjct: 215 VFVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEA 274

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRID 377
             ++PD+ T++ V+  C+ +   ELG+W+  Y+ K   +     I N L+DM+AKCG I 
Sbjct: 275 ENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANVLMDMHAKCGNIK 334

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
           +A  +F  M+ + + S+T MI GLA++G    AL  F +M + G +PD + F+ +LSACS
Sbjct: 335 RACQIFDGMEEKTIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDSLVFLSLLSACS 394

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAGLV+EG + F  M   Y++ P  EHYGCMVD+  RAGL+ EA   +++MP+ PD  VW
Sbjct: 395 HAGLVDEGWRCFSSMEADYHIXPWMEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVW 454

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
             LLGAC     + LA  VM  L    P+    Y+L++N+++S   W    ++RK+M +R
Sbjct: 455 RTLLGACXXQGNISLANQVMNXLCELGPKKSEDYVLLSNLFASNAEWDNVXEVRKEMGDR 514

Query: 558 KV-KKTPGCSLVE 569
            V K+ PGCS +E
Sbjct: 515 GVTKQDPGCSFIE 527



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 158/305 (51%), Gaps = 6/305 (1%)

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           D  +W T+I+ Y++ + P EAIL +  + +  L+ D   LV V+ AC     +  G +IH
Sbjct: 43  DTYTWNTIIRGYLEGNDPEEAILIYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIH 102

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
             I    F    +V I  AL+ MY         +++FDEMP +++V WN++IA   H   
Sbjct: 103 GQIFKLGFEF--EVIIQTALLSMYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNC 160

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
             +  ++   M    +KP+  T V +L+ C+++  L  GK VH Y+ KN I  D F+ NA
Sbjct: 161 PYKVREVSYDMVSSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHNA 220

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           L+D+Y+KCG I  A  VF+ M  R+V S+T++I G + +    +AL  F +M    I PD
Sbjct: 221 LIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPD 280

Query: 426 EVTFVGVLSACSHAGLVEEG--CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           E+T +GV+  CS     E G     ++  + +    P   +   ++D+  + G I+ A  
Sbjct: 281 EITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANV--LMDMHAKCGNIKRACQ 338

Query: 484 LIKSM 488
           +   M
Sbjct: 339 IFDGM 343



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 112/234 (47%), Gaps = 8/234 (3%)

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G    AR++ D++   +  +WN++I G       +EA+ I+  ++  GLK D +TLV V+
Sbjct: 27  GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILIYNHVRKKGLKVDTYTLVFVI 86

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG---VFRSMKCR 389
            +C     +  G+ +H  + K     +  I  AL+ MY   G  D+  G   +F  M  R
Sbjct: 87  KACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLSMY---GLFDEDCGLQQIFDEMPQR 143

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           D+  + A+I   A     +K  ++  +M    ++P+ VT V +LS CS    + EG K  
Sbjct: 144 DLVMWNALIAAYAHGNCPYKVREVSYDMVSSNVKPNGVTAVSILSVCSSLRALREG-KAV 202

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
                   ++     +  ++D++ + G IR+A+ + + MP+  +   W +L+  
Sbjct: 203 HGYVTKNLIEXDVFVHNALIDVYSKCGSIRDAVQVFQLMPM-RNVVSWTSLING 255


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 187/490 (38%), Positives = 277/490 (56%), Gaps = 31/490 (6%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+H   +K   + +    + L+  YA        +    F +   +  + V W T+I+A
Sbjct: 28  KQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDR--ISSPNTVMWNTMIRA 85

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF--- 253
           Y   + P EA+L +  M   ++  +      +L ACS L  L+   +IH  I    F   
Sbjct: 86  YSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSE 145

Query: 254 ------------------------NLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
                                   +L P  D+   N +ID Y+KCGN+  A K+F  MP 
Sbjct: 146 VYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPE 205

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           KNV+SW SMI G    G  KEAL + ++M   G+KPD  TL C L++CA +G LE GKW+
Sbjct: 206 KNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWI 265

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           HTY+ KN I  D  +G AL+DMY KCG + +A  VF  ++ + VY++TA+I G A+HGK 
Sbjct: 266 HTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKG 325

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            +ALD F++M + GI+P   TF  VL+ACSH GLVEEG   F  MS  YN++P  EHYGC
Sbjct: 326 SEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGC 385

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           MVDL GRAG ++EA + ++SMP+ P+A +WG+LL AC +H  +EL + + + L+  +PE 
Sbjct: 386 MVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEH 445

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
           DG YI + +I+++   W EA ++R  +K + +   PGCS + + G  +EF  G + HP  
Sbjct: 446 DGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLNGVAHEFFAGAEPHPHV 505

Query: 588 LEIYKLLDEI 597
            E+Y + + I
Sbjct: 506 REMYDMSNLI 515



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/446 (29%), Positives = 221/446 (49%), Gaps = 52/446 (11%)

Query: 21  QLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--- 77
           QL++      LE   ++G+LKQ H  ++K G+ +H+  +   ++++     E  NL+   
Sbjct: 8   QLNVEQTMSLLERCSNIGELKQIHGQLLKKGTIRHKLTV--SRLLTTYASMEFSNLTYAR 65

Query: 78  -----LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
                + +P   ++N +I+  SN+N P EA+ LY +ML   +  N YT P++LKAC    
Sbjct: 66  MVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALS 125

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------------- 176
           +L    Q+H   +K    S VY  N+L+R+YA+ G IK+ H LF                
Sbjct: 126 ALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMID 185

Query: 177 --------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
                         F+  P  +++++SWT++I  +V+     EA+     M  A ++PD 
Sbjct: 186 GYIKCGNVEMAYKIFQAMP--EKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDK 243

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
           + L   LSAC+ LG L  G  IH YI  N   + P   +  ALIDMY+KCG +  A  VF
Sbjct: 244 ITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDP--VLGCALIDMYVKCGEMKKALLVF 301

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
            ++  K V +W ++I G    G+  EALD F +MQ  G+KP  FT   VL +C++ G +E
Sbjct: 302 SKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVE 361

Query: 343 LGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIV 399
            GK +   +   + N    + +   +VD+  + G + +A     SM  + +   + +++ 
Sbjct: 362 EGKSLFESMSTFY-NMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLN 420

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPD 425
              +H    K L++  E+ +  IE D
Sbjct: 421 ACHLH----KHLELGKEIGKFLIELD 442


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 191/508 (37%), Positives = 293/508 (57%), Gaps = 7/508 (1%)

Query: 100  EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
            EA  ++ +M  +GL+P++ T   +L     + +L    +VH ++++T L+S+  V +  +
Sbjct: 507  EAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFI 566

Query: 160  RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
             +Y  CG I     LF       + R + +W  +I    +     EA+  F  M +    
Sbjct: 567  HMYIRCGSIDDARLLFD----KLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFI 622

Query: 220  PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            PD    + +LSA      L    ++H + TD       D+ + NAL+  Y KCGN+  A+
Sbjct: 623  PDATTFINILSANVDEEALEWVKEVHSHATDAGL---VDLRVGNALVHTYSKCGNVKYAK 679

Query: 280  KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +VFD+M  +NV +W  MI GL   G   +A   F +M   G+ PD  T V +L++CA+ G
Sbjct: 680  QVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTG 739

Query: 340  WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
             LE  K VH +     + +D  +GNALV MYAKCG ID A  VF  M  RDV+S+T MI 
Sbjct: 740  ALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIG 799

Query: 400  GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
            GLA HG+  +ALD F +M   G +P+  ++V VL+ACSHAGLV+EG + FL M++ Y ++
Sbjct: 800  GLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIE 859

Query: 460  PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
            P  EHY CMVDL GRAGL+ EA   I +MP+ PD   WGALLGAC  +  +E+AE   + 
Sbjct: 860  PTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKE 919

Query: 520  LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
             ++ +P+    Y+L++NIY++  +W++ L +R  M+ + ++K PG S +EV    + F  
Sbjct: 920  RLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVV 979

Query: 580  GDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            GD SHP++ EIY  L++++ + K  GY+
Sbjct: 980  GDTSHPESKEIYAQLNDLIERLKAKGYV 1007



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/409 (31%), Positives = 226/409 (55%), Gaps = 16/409 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+A+ +  + +G+  ++++   +L+ C + + + + +QVH   +K+ +  N+YV N L+
Sbjct: 101 DAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLL 160

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
           R+Y  CG ++   ++F        ++++  WTT+I  Y +  +  +A+  +  M Q   +
Sbjct: 161 RVYIRCGRLQCARQVFD----KLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQ 216

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  + +L AC    +L  G KIH +I  + F    DV +  AL++MY+KCG+I  A+
Sbjct: 217 PNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQ--SDVRVETALVNMYVKCGSIEDAQ 274

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +FD+M  +NV+SW  MI GL H G+ +EA  +F +MQ  G  P+ +T V +LN+ A+ G
Sbjct: 275 LIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAG 334

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            LE  K VH++     +  D  +GNALV MYAK G ID A  VF  M  RD++S+T MI 
Sbjct: 335 ALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIG 394

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL-----VEEGCKHFLDMSR 454
           GLA HG+  +A  +F +M + G  P+  T++ +L+A + A       V+   KH  +   
Sbjct: 395 GLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGF 454

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           + +L+        ++ ++ + G I +A  +   M    D   W A++G 
Sbjct: 455 ISDLRIGN----ALIHMYAKCGSIDDARLVFDGM-CDRDVISWNAMMGG 498



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 145/521 (27%), Positives = 239/521 (45%), Gaps = 47/521 (9%)

Query: 41  KQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL-----QNPQVYLYNFIIQCLSN 95
           K+ HA II++G  Q   ++    +    +   IE+  L         V  +  +I  L++
Sbjct: 239 KKIHAHIIQSGF-QSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAH 297

Query: 96  -ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
                EA  L+ +M  +G +PN+YT   +L A   + +L   ++VH++++   L  ++ V
Sbjct: 298 YGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRV 357

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ +YA  G I     +F        +RD+ SWT +I    +     EA   F  M 
Sbjct: 358 GNALVHMYAKSGSIDDARVVFD----GMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQ 413

Query: 215 QANLRPDGMILVIVL--SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           +    P+    + +L  SA +    L     +H++  +  F    D+ I NALI MY KC
Sbjct: 414 RNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGF--ISDLRIGNALIHMYAKC 471

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G+I  AR VFD M  ++V+SWN+M+ GL   G   EA  +F +MQ  GL PD  T + +L
Sbjct: 472 GSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLL 531

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           N+  +   LE    VH +  +  + +D  +G+A + MY +CG ID A  +F  +  R V 
Sbjct: 532 NTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVT 591

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA----------------C 436
           ++ AMI G A      +AL +F +M + G  PD  TF+ +LSA                 
Sbjct: 592 TWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHA 651

Query: 437 SHAGLVE-----------EGCKHFLDMSRVYN--LQPQTEHYGCMVDLFGRAGLIREALD 483
           + AGLV+             C +     +V++  ++     +  M+    + G   +A  
Sbjct: 652 TDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFS 711

Query: 484 LIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
               M    +VPDA  + ++L AC     +E  + V  + V
Sbjct: 712 HFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAV 752



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 98/208 (47%), Gaps = 24/208 (11%)

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
           K+A+ + +     G+  D F+ V +L  C     + L K VH  + K+ +  + ++ N L
Sbjct: 100 KDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKL 159

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           + +Y +CGR+  A  VF  +  +++Y +T MI G A +G A  A+ ++ +M Q   +P+E
Sbjct: 160 LRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNE 219

Query: 427 VTFVGVLSACS-----------HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           +T++ +L AC            HA +++ G             Q        +V+++ + 
Sbjct: 220 ITYLSILKACCCPVNLKWGKKIHAHIIQSG------------FQSDVRVETALVNMYVKC 267

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGA 503
           G I +A  LI    +  +   W  ++G 
Sbjct: 268 GSIEDA-QLIFDKMVERNVISWTVMIGG 294


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 196/572 (34%), Positives = 316/572 (55%), Gaps = 13/572 (2%)

Query: 42  QFHAFIIKTGSPQHQ-----TQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q HA+ +KT           T  +Y K   +    ++ N +  NP    +N +I   +  
Sbjct: 292 QLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFN-TFPNPTRQSHNALIVGYARQ 350

Query: 97  NP-LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           +  LEA+ ++R +    L  +  +L   L AC   +    G Q+H  ++K  L  N+ V 
Sbjct: 351 DQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVA 410

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           NT++ +YA CG +     +F         +D VSW  +I A+ + ++  E +  F  M +
Sbjct: 411 NTILDMYAKCGALMEACLIFD----DMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLR 466

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
           + + PD      V+ AC+    L+ G+++H  +  +   L  D F+ +A+IDMY KCG +
Sbjct: 467 STMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGL--DWFVGSAIIDMYCKCGML 524

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A K+ + +  +  VSWNS+I+G +   Q + AL  F RM  +G+ PD+FT   VL+ C
Sbjct: 525 VEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDIC 584

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           AN+  +ELGK +H  + K  +++D +I + +VDMY+KCG +  +  +F     RD  +++
Sbjct: 585 ANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWS 644

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           AMI   A HG    A+ +F EM    ++P+   F+ VL AC+H G V++G  +F +M   
Sbjct: 645 AMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSH 704

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           Y L PQ EHY CMVDL GR+G + EAL+LI+SMP   D  +W  LLG C++   VE+AE 
Sbjct: 705 YGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEK 764

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
              +L++ +P+   AY+L++N+Y+    W E  K+R  MK  K+KK PGCS ++V  E +
Sbjct: 765 AANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVH 824

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F  GDK+HP++ EIY+    ++ + K  GY+
Sbjct: 825 AFLVGDKAHPRSEEIYQQTHLLVDEMKWDGYV 856



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 211/423 (49%), Gaps = 12/423 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E + LY+ ML +G+  +  T     ++C    +  +G Q+HAY++KT    +  V    +
Sbjct: 254 EGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATL 313

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA C  +    K+F+   +P  Q    S   LI  Y + D   EA+  F  + ++ L 
Sbjct: 314 DMYAKCDRMVDARKVFNTFPNPTRQ----SHNALIVGYARQDQVLEALEIFRSLQKSYLD 369

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            D + L   L+ACS +     GI++H         L  ++ + N ++DMY KCG +  A 
Sbjct: 370 FDEISLSGALTACSAIKGYLEGIQLHGLAV--KCGLDFNICVANTILDMYAKCGALMEAC 427

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +FD+M +K+ VSWN++IA        +E L +F  M    ++PDD+T   V+ +CA   
Sbjct: 428 LIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKK 487

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L  G  VH  + K+ +  D F+G+A++DMY KCG + +A  +   ++ R   S+ ++I 
Sbjct: 488 ALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIIS 547

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G +   +   AL  FS M QVG+ PD  T+  VL  C++   VE G +      ++  LQ
Sbjct: 548 GFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIH---GQILKLQ 604

Query: 460 PQTEHY--GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
             ++ Y    +VD++ + G ++++  + +  P   D   W A++ A   H   E A  + 
Sbjct: 605 LHSDVYIASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAYAYHGLGEDAIKLF 663

Query: 518 ENL 520
           E +
Sbjct: 664 EEM 666



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 200/438 (45%), Gaps = 33/438 (7%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF--- 175
           T  ++ + C   +++  G+Q HA    T  +  V+V N L++ Y  C  +     +F   
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 176 ------------------------HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
                                    F      +RD+VSW +++  Y++  +  ++I  F 
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            M    ++ D     +VL AC+ + D  LG+++H       F+   DV    AL+DMY  
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFD--SDVVTGTALVDMYST 217

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           C  +  A  +F EMP +N V W+++IAG     +F E L +++ M   G+     T    
Sbjct: 218 CKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASA 277

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
             SCA +   ELG  +H Y  K +   D  +G A +DMYAKC R+  A  VF +      
Sbjct: 278 FRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTR 337

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFL 450
            S+ A+IVG A   +  +AL+IF  + +  ++ DE++  G L+ACS      EG + H L
Sbjct: 338 QSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGL 397

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            +    +      +   ++D++ + G + EA  +   M  + DA  W A++ A + +  V
Sbjct: 398 AVKCGLDFNICVAN--TILDMYAKCGALMEACLIFDDME-IKDAVSWNAIIAAHEQNEHV 454

Query: 511 ELAEIVMENLVRFEPEGD 528
           E    +  +++R   E D
Sbjct: 455 EETLALFVSMLRSTMEPD 472



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 132/518 (25%), Positives = 233/518 (44%), Gaps = 45/518 (8%)

Query: 77  SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           S+    V  +N ++ C L N    ++I ++ +M +  +  +  T   VLKAC   +   +
Sbjct: 129 SMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGL 188

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G QVH  +++    S+V     L+ +Y+ C   K  H    F + P  +R+ V W+ +I 
Sbjct: 189 GLQVHCLAIQMGFDSDVVTGTALVDMYSTCK--KLDHAFNIFCEMP--ERNSVCWSAVIA 244

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            YV+ D  TE +  +  M    +            +C+ L    LG ++H Y    +F  
Sbjct: 245 GYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGY 304

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             D  +  A +DMY KC  +  ARKVF+  P     S N++I G   + Q  EAL+IFR 
Sbjct: 305 --DNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRS 362

Query: 316 MQGLGLKPDDFTLVCVLNSCANI-GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           +Q   L  D+ +L   L +C+ I G+LE G  +H    K  ++ +  + N ++DMYAKCG
Sbjct: 363 LQKSYLDFDEISLSGALTACSAIKGYLE-GIQLHGLAVKCGLDFNICVANTILDMYAKCG 421

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            + +A  +F  M+ +D  S+ A+I     +    + L +F  M +  +EPD+ TF  V+ 
Sbjct: 422 ALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVK 481

Query: 435 ACS-----------HAGLVEEG-----------------CKHFLDMSRVYNL--QPQTEH 464
           AC+           H  +++ G                 C   ++  +++    +  T  
Sbjct: 482 ACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVS 541

Query: 465 YGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
           +  ++  F        AL     M    ++PD F +  +L  C   A VEL + +   ++
Sbjct: 542 WNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQIL 601

Query: 522 RFEPEGDGAYILMT--NIYSSKNRWKEALKLRKKMKER 557
           + +   D  YI  T  ++YS     +++  + +K  +R
Sbjct: 602 KLQLHSD-VYIASTIVDMYSKCGNMQDSRIMFEKAPKR 638


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 214/572 (37%), Positives = 322/572 (56%), Gaps = 15/572 (2%)

Query: 41  KQFHAFIIKTGSPQHQT--QILYDKIISLSRGNEIENL--SLQNPQVYLYNFIIQCL-SN 95
           KQ HA I++ G  +  +   +L D  +   R      L   + N  +  +  ++     N
Sbjct: 269 KQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQN 328

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           +   EA+ L+  M   GL P+ +    +L +C    +L  G QVHAY++K  L ++ YV 
Sbjct: 329 SLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVT 388

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE---AILSFFD 212
           N+L+ +YA C  +    K+F       A  D+V +  +I+ Y ++    E   A+  F D
Sbjct: 389 NSLIDMYAKCDCLTEARKVFDIF----AADDVVLFNAMIEGYSRLGTQWELHDALNIFHD 444

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M    +RP  +  V +L A + L  L L  +IH  +    F L+ D+F  +ALI +Y  C
Sbjct: 445 MRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFK--FGLNLDIFAGSALIAVYSNC 502

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
             +  +R VFDEM VK++V WNSM +G   + + +EAL++F  +Q    +PD+FT V ++
Sbjct: 503 YCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMV 562

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +  N+  L+LG+  H  L K  +  + +I NAL+DMYAKCG  + A   F S   RDV 
Sbjct: 563 TAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVV 622

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            + ++I   A HG+  KAL +  +M   GIEP+ +TFVGVLSACSHAGLVE+G K F  M
Sbjct: 623 CWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELM 682

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
            R + ++P+TEHY CMV L GRAG + EA +LI+ MP  P A VW +LL  C     VEL
Sbjct: 683 LR-FGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVEL 741

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           AE   E  +  +P+  G++ L++NIY+SK  W +A K+R++MK   V K PG S +E+  
Sbjct: 742 AEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPGRSWIEINK 801

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
           E + F   DKSH K  +IY++LD+++ Q + H
Sbjct: 802 EVHIFLSKDKSHCKANQIYEVLDDLLVQIRGH 833



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 145/518 (27%), Positives = 245/518 (47%), Gaps = 47/518 (9%)

Query: 79  QNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +   V     I  C+       ++ L+ +++   ++P+ Y L  VL AC     L  G+Q
Sbjct: 211 EKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQ 270

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +HA+ ++     +  + N L+  Y  CG ++A HKLF         ++++SWTTL+  Y 
Sbjct: 271 IHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLF----DGMPNKNIISWTTLLSGYK 326

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +     EA+  F  M +  L+PD      +L++C+ L  L  G ++H Y      NL  D
Sbjct: 327 QNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKA--NLGND 384

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG---QFKEALDIFRR 315
            ++ N+LIDMY KC  +  ARKVFD     +VV +N+MI G +  G   +  +AL+IF  
Sbjct: 385 SYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHD 444

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+   ++P   T V +L + A++  L L K +H  + K  +N D F G+AL+ +Y+ C  
Sbjct: 445 MRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYC 504

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +  +  VF  MK +D+  + +M  G     +  +AL++F E+      PDE TFV +++A
Sbjct: 505 LKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTA 564

Query: 436 CS-----------HAGLVEEG--CKHF-----LDMSRVYNLQPQTEH------------- 464
                        H  L++ G  C  +     LDM       P+  H             
Sbjct: 565 AGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCG-SPEDAHKAFDSAASRDVVC 623

Query: 465 YGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
           +  ++  +   G  R+AL +++ M    + P+   +  +L AC     VE      E ++
Sbjct: 624 WNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML 683

Query: 522 RF--EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           RF  EPE +  Y+ M ++     R  EA +L +KM  +
Sbjct: 684 RFGIEPETE-HYVCMVSLLGRAGRLNEARELIEKMPTK 720



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 180/347 (51%), Gaps = 12/347 (3%)

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           VH   + + L  + Y+ N LM LY+  G +    K+F        +R+LV+W+T++ A  
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFE----KMPERNLVTWSTMVSACN 121

Query: 199 KMDYPTEAILSFFDMCQANLR-PDGMILVIVLSACSKLGDLS--LGIKIHRYITDNHFNL 255
              +  E+++ F D  +     P+  IL   + ACS L      +  ++  ++  + F+ 
Sbjct: 122 HHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFD- 180

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             DV++   LID YLK GNI  AR VFD +P K+ V+W +MI+G    G+   +L +F +
Sbjct: 181 -RDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           +    + PD + L  VL++C+ + +LE GK +H ++ +     D  + N L+D Y KCGR
Sbjct: 240 LMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGR 299

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +  A  +F  M  +++ S+T ++ G   +    +A+++F+ M + G++PD      +L++
Sbjct: 300 VRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTS 359

Query: 436 CSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           C+    +E G + H   +    NL   +     ++D++ +   + EA
Sbjct: 360 CASLHALEFGTQVHAYTIKA--NLGNDSYVTNSLIDMYAKCDCLTEA 404


>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 529

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/493 (40%), Positives = 289/493 (58%), Gaps = 17/493 (3%)

Query: 84  YLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           Y +N II+  L   +P EAI +Y  +  KGL  +TYTL +V+KAC     +  G+Q+H  
Sbjct: 45  YTWNTIIRGYLEGNDPEEAILVYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQ 104

Query: 143 SMKTALLSNVYVFNTLMRLYAV----CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
             K      V +   L+ LY +    CGL +       F + PQ  RDLV W  LI AY 
Sbjct: 105 IFKLGFEFEVIIQTALLNLYGLFDEDCGLQQI------FDEMPQ--RDLVMWNALIAAYA 156

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
             + P +     +DM ++N++P+G+  V +LS CS L  L  G  +H Y+T N      D
Sbjct: 157 HGNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEF--D 214

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           VF+HNALI +Y KCG+I  A +VF  MP++NVVSW S+I G +      EAL  F++M+ 
Sbjct: 215 VFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEA 274

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRID 377
             ++PD+ T++ V+  C+ +   ELG+W+  Y+ K   +     I NAL+DM+AKCG I+
Sbjct: 275 ENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPAIANALMDMHAKCGNIN 334

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
           +A  +F  M+ + + S+T MI GLA+HG    AL  F +M + G +PD + F+ +LSACS
Sbjct: 335 RACQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQMQREGFKPDSLVFLSLLSACS 394

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAGLV+EG + F  M   Y++ P  EHYGCMVD+  RAGL+ EA   +++MP+ PD  VW
Sbjct: 395 HAGLVDEGWRCFSSMEADYHISPWMEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVW 454

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
             LLGAC     + LA  VM  L    P+    Y+L++N+++S   W    ++RK+M +R
Sbjct: 455 RTLLGACHTQGNISLANQVMNYLCELGPKKSEDYVLLSNLFASNAEWDNVGEVRKEMGDR 514

Query: 558 KV-KKTPGCSLVE 569
            V K+ PGCS +E
Sbjct: 515 GVTKQDPGCSFIE 527



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 156/303 (51%), Gaps = 2/303 (0%)

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           D  +W T+I+ Y++ + P EAIL +  + +  L+ D   LV V+ AC     +  G +IH
Sbjct: 43  DTYTWNTIIRGYLEGNDPEEAILVYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIH 102

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
             I    F    +V I  AL+++Y         +++FDEMP +++V WN++IA   H   
Sbjct: 103 GQIFKLGFEF--EVIIQTALLNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNC 160

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
             +  ++   M    +KP+  T V +L+ C+++  L  GK VH Y+ KN I  D F+ NA
Sbjct: 161 PYKVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNA 220

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           L+ +Y+KCG I  A  VF+ M  R+V S+T++I G + +    +AL  F +M    I PD
Sbjct: 221 LIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPD 280

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
           E+T +GV+  CS     E G      + ++  L+        ++D+  + G I  A  + 
Sbjct: 281 EITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPAIANALMDMHAKCGNINRACQIF 340

Query: 486 KSM 488
             M
Sbjct: 341 DGM 343



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 113/234 (48%), Gaps = 8/234 (3%)

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G    AR++ D++   +  +WN++I G       +EA+ ++  ++  GLK D +TLV V+
Sbjct: 27  GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILVYNHVRKKGLKVDTYTLVFVI 86

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG---VFRSMKCR 389
            +C     +  G+ +H  + K     +  I  AL+++Y   G  D+  G   +F  M  R
Sbjct: 87  KACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLY---GLFDEDCGLQQIFDEMPQR 143

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           D+  + A+I   A     +K  ++  +M +  ++P+ VT V +LS CS    + EG K  
Sbjct: 144 DLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREG-KAV 202

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
                   ++     +  ++ ++ + G IR+A+ + + MP+  +   W +L+  
Sbjct: 203 HGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPM-RNVVSWTSLING 255


>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Brachypodium distachyon]
          Length = 608

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 187/529 (35%), Positives = 308/529 (58%), Gaps = 8/529 (1%)

Query: 81  PQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           P  + YN  ++  ++  P  A+ L+  ML   L P+ YTLP++L A  ++      +  H
Sbjct: 80  PTAFSYNVTLRFFASTRPRTALRLFLRMLRAALRPDAYTLPFLLLAAARAPEPPFARSAH 139

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           A   +  L ++ +  ++L+ +Y+  G   A  ++F        +RD+VSW  +++AY + 
Sbjct: 140 ALLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFD----GIPRRDVVSWNAMMKAYERA 195

Query: 201 DYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
               +    F DM  +  + P+ + + +VL+AC   GDL LG  +  ++      +    
Sbjct: 196 GMAADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGS-- 253

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            + +AL+ MY KCG +  AR+VFD +  K+VV+WN+MI G    G  KEA+ +F  M+  
Sbjct: 254 LVGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQE 313

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G  PD  TLV VL++CA +G LELG  +  Y     +  + ++G ALVDMY+KCG +D+A
Sbjct: 314 GASPDKITLVGVLSACAAVGALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKA 373

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSH 438
             VF  + C++  ++ A+I GLA +G+  +A+  F  M ++ G+ PD++TF+GVLSAC H
Sbjct: 374 VQVFGKLPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVH 433

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           AGL+++G + F  ++  + + P+ EHY CMVDL  RAG + EA D ++ +P   DA + G
Sbjct: 434 AGLLKDGRRWFNSLTSEFQIIPKIEHYSCMVDLLARAGHLEEAWDFVEKIPGKADAVMLG 493

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           ALL AC+    VE++E V+  +++ EP     Y++ + IY+S +R  ++ K+R  M+ER 
Sbjct: 494 ALLAACRKCKNVEVSERVINRIMQLEPSNSWNYVVSSKIYASSDRLDDSAKMRGLMRERG 553

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           V K PGCS VEV G+  EF  GD+S     ++Y+L D ++ + +  GY+
Sbjct: 554 VSKIPGCSWVEVSGKVLEFYAGDESQHGADDMYQLHDMLIDEMRLEGYV 602


>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
          Length = 746

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 192/529 (36%), Positives = 314/529 (59%), Gaps = 8/529 (1%)

Query: 81  PQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           P  + YN  I+  +++ P  ++ L+  ML   + P++YTLP++L A  +  +  + +  H
Sbjct: 116 PTAFSYNVAIRFFASSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAH 175

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           A   K  L  + +  ++L+ +Y+      A  K+F         RD+VSW  +++AY ++
Sbjct: 176 ALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFD----GIPTRDVVSWNAMMKAYGRV 231

Query: 201 DYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
               E    F DM  +  + P+ + + +VL+AC   GDL LG  +  +       +  D 
Sbjct: 232 GMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEM--DS 289

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            + +AL+ MY KCG I  AR+VFD +  K++V+WN+MI G    G   EA+ +F  M+  
Sbjct: 290 LVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIA 349

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G++PD  TL  VL++C+ +G LELG  +  Y  +  + ++ ++G ALVDMYAKCG +D+A
Sbjct: 350 GMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKA 409

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSH 438
             VFR M C++V S+ A+I GLA +G+  +A+  F  M ++ G++PD++TF+GVLSAC H
Sbjct: 410 IEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVH 469

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           AGLV++G + F  ++  + + P+ EHY CMVDL  R+G + EA D I+ +P   DA + G
Sbjct: 470 AGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLG 529

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           ALL AC+    VE+ E V+  +++ EP     Y++ + IY+S +R  ++ K+R  M+ER 
Sbjct: 530 ALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERG 589

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           V KTPGCS VEV G+  EF  GD+      ++Y++LD ++ + +  GY+
Sbjct: 590 VNKTPGCSWVEVSGKVLEFYAGDEPQHGADDMYQVLDLLVDEMRLEGYV 638


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 208/582 (35%), Positives = 321/582 (55%), Gaps = 21/582 (3%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--SLQNPQVYLYNFIIQCL 93
           SV QL+Q  A ++       +   L  K + L   N    L    + P  Y +N++I+ L
Sbjct: 45  SVNQLRQIQAQMLL--HSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGL 102

Query: 94  SNA-NPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
           +N  N  EA ++LYR M   GL P+ +T  +V  AC + + + VG+ VH+   K  L  +
Sbjct: 103 TNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERD 162

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
           V++ ++L+ +YA CG +    KLF        +RD VSW ++I  Y +  Y  +A+  F 
Sbjct: 163 VHINHSLIMMYAKCGQVGYARKLFD----EITERDTVSWNSMISGYSEAGYAKDAMDLFR 218

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            M +    PD   LV +L ACS LGDL  G  +          LS   F+ + LI MY K
Sbjct: 219 KMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS--TFLGSKLISMYGK 276

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           CG++ SAR+VF++M  K+ V+W +MI   +  G+  EA  +F  M+  G+ PD  TL  V
Sbjct: 277 CGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTV 336

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L++C ++G LELGK + T+  +  +  + ++   LVDMY KCGR+++A  VF +M  ++ 
Sbjct: 337 LSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNE 396

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            ++ AMI   A  G A +AL +F  MS   + P ++TF+GVLSAC HAGLV +GC++F +
Sbjct: 397 ATWNAMITAYAHQGHAKEALLLFDRMS---VPPSDITFIGVLSACVHAGLVHQGCRYFHE 453

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           MS ++ L P+ EHY  ++DL  RAG++ EA + ++  P  PD  +  A+LGAC     V 
Sbjct: 454 MSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVA 513

Query: 512 LAEIVMENLVRF-EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           + E  M  L+   E +  G Y++ +N+ +    W E+ K+R  M++R V KTPGCS +E+
Sbjct: 514 IREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEI 573

Query: 571 YGEFYEFRKGDK----SHPKTLEIYKLLDEIMHQSK-NHGYI 607
            GE  EF  G          +  ++ LL E M + +   GYI
Sbjct: 574 EGELMEFLAGSDYLQCGREDSGSLFDLLVEEMKRERYEFGYI 615



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 205/386 (53%), Gaps = 22/386 (5%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           ++LK C     LR   Q+ A      LL +V   N L+      G       LF   + P
Sbjct: 38  FLLKKCISVNQLR---QIQA----QMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEP 90

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFD-MCQANLRPDGMILVIVLSACSKLGDLSL 240
               +  S+  +I+         EA LS +  M  + L+PD      V  AC+KL ++ +
Sbjct: 91  ----NHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGV 146

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G  +H  +      L  DV I+++LI MY KCG +  ARK+FDE+  ++ VSWNSMI+G 
Sbjct: 147 GRSVHSSLF--KVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGY 204

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
           +  G  K+A+D+FR+M+  G +PD+ TLV +L +C+++G L  G+ +        I    
Sbjct: 205 SEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLST 264

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
           F+G+ L+ MY KCG +D A  VF  M  +D  ++TAMI   + +GK+ +A  +F EM + 
Sbjct: 265 FLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKT 324

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
           G+ PD  T   VLSAC   G +E G +   H  ++S  +N+   T     +VD++G+ G 
Sbjct: 325 GVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVAT----GLVDMYGKCGR 380

Query: 478 IREALDLIKSMPLVPDAFVWGALLGA 503
           + EAL + ++MP+  +A  W A++ A
Sbjct: 381 VEEALRVFEAMPVKNEA-TWNAMITA 405


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 208/582 (35%), Positives = 321/582 (55%), Gaps = 21/582 (3%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--SLQNPQVYLYNFIIQCL 93
           SV QL+Q  A ++       +   L  K + L   N    L    + P  Y +N++I+ L
Sbjct: 49  SVNQLRQIQAQMLL--HSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGL 106

Query: 94  SNA-NPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
           +N  N  EA ++LYR M   GL P+ +T  +V  AC + + + VG+ VH+   K  L  +
Sbjct: 107 TNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERD 166

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
           V++ ++L+ +YA CG +    KLF        +RD VSW ++I  Y +  Y  +A+  F 
Sbjct: 167 VHINHSLIMMYAKCGQVGYARKLFD----EITERDTVSWNSMISGYSEAGYAKDAMDLFR 222

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            M +    PD   LV +L ACS LGDL  G  +          LS   F+ + LI MY K
Sbjct: 223 KMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS--TFLGSKLISMYGK 280

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           CG++ SAR+VF++M  K+ V+W +MI   +  G+  EA  +F  M+  G+ PD  TL  V
Sbjct: 281 CGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTV 340

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L++C ++G LELGK + T+  +  +  + ++   LVDMY KCGR+++A  VF +M  ++ 
Sbjct: 341 LSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNE 400

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            ++ AMI   A  G A +AL +F  MS   + P ++TF+GVLSAC HAGLV +GC++F +
Sbjct: 401 ATWNAMITAYAHQGHAKEALLLFDRMS---VPPSDITFIGVLSACVHAGLVHQGCRYFHE 457

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           MS ++ L P+ EHY  ++DL  RAG++ EA + ++  P  PD  +  A+LGAC     V 
Sbjct: 458 MSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVA 517

Query: 512 LAEIVMENLVRF-EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           + E  M  L+   E +  G Y++ +N+ +    W E+ K+R  M++R V KTPGCS +E+
Sbjct: 518 IREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEI 577

Query: 571 YGEFYEFRKGDK----SHPKTLEIYKLLDEIMHQSK-NHGYI 607
            GE  EF  G          +  ++ LL E M + +   GYI
Sbjct: 578 EGELMEFLAGSDYLQCGREDSGSLFDLLVEEMKRERYEFGYI 619



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 205/386 (53%), Gaps = 22/386 (5%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           ++LK C     LR   Q+ A      LL +V   N L+      G       LF   + P
Sbjct: 42  FLLKKCISVNQLR---QIQA----QMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEP 94

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFD-MCQANLRPDGMILVIVLSACSKLGDLSL 240
               +  S+  +I+         EA LS +  M  + L+PD      V  AC+KL ++ +
Sbjct: 95  ----NHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGV 150

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G  +H  +      L  DV I+++LI MY KCG +  ARK+FDE+  ++ VSWNSMI+G 
Sbjct: 151 GRSVHSSLF--KVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGY 208

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
           +  G  K+A+D+FR+M+  G +PD+ TLV +L +C+++G L  G+ +        I    
Sbjct: 209 SEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLST 268

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
           F+G+ L+ MY KCG +D A  VF  M  +D  ++TAMI   + +GK+ +A  +F EM + 
Sbjct: 269 FLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKT 328

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
           G+ PD  T   VLSAC   G +E G +   H  ++S  +N+   T     +VD++G+ G 
Sbjct: 329 GVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVAT----GLVDMYGKCGR 384

Query: 478 IREALDLIKSMPLVPDAFVWGALLGA 503
           + EAL + ++MP+  +A  W A++ A
Sbjct: 385 VEEALRVFEAMPVKNEA-TWNAMITA 409


>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
          Length = 746

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 192/529 (36%), Positives = 314/529 (59%), Gaps = 8/529 (1%)

Query: 81  PQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           P  + YN  I+  +++ P  ++ L+  ML   + P++YTLP++L A  +  +  + +  H
Sbjct: 116 PTAFSYNVAIRFFASSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAH 175

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           A   K  L  + +  ++L+ +Y+      A  K+F         RD+VSW  +++AY ++
Sbjct: 176 ALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFD----GIPTRDVVSWNAMMKAYGRV 231

Query: 201 DYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
               E    F DM  +  + P+ + + +VL+AC   GDL LG  +  +       +  D 
Sbjct: 232 GMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEM--DS 289

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            + +AL+ MY KCG I  AR+VFD +  K++V+WN+MI G    G   EA+ +F  M+  
Sbjct: 290 LVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIA 349

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G++PD  TL  VL++C+ +G LELG  +  Y  +  + ++ ++G ALVDMYAKCG +D+A
Sbjct: 350 GMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKA 409

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSH 438
             VFR M C++V S+ A+I GLA +G+  +A+  F  M ++ G++PD++TF+GVLSAC H
Sbjct: 410 IEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVH 469

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           AGLV++G + F  ++  + + P+ EHY CMVDL  R+G + EA D I+ +P   DA + G
Sbjct: 470 AGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLG 529

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           ALL AC+    VE+ E V+  +++ EP     Y++ + IY+S +R  ++ K+R  M+ER 
Sbjct: 530 ALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERG 589

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           V KTPGCS VEV G+  EF  GD+      ++Y++LD ++ + +  GY+
Sbjct: 590 VNKTPGCSWVEVSGKVLEFYAGDEPQHGADDMYQVLDLLVDEMRLEGYV 638


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 200/509 (39%), Positives = 300/509 (58%), Gaps = 9/509 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ L  +M  +G+ PN+ T+  VL    ++++L  G+ +H Y ++ +  + V V   L+
Sbjct: 193 DAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLL 252

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD--MCQAN 217
            +YA C  +    K+F         R+ VSW+ +I  YV  D   EA L  FD  + +  
Sbjct: 253 DMYAKCQCLLYARKIFDV----MGVRNEVSWSAMIGGYVASDCMKEA-LELFDQMILKDA 307

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           + P  + L  VL AC+KL DLS G K+H YI         D+ + N L+ MY KCG I  
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK--LGSVLDILLGNTLLSMYAKCGVIDD 365

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A + FDEM  K+ VS++++++G    G    AL IFR MQ  G+ PD  T++ VL +C++
Sbjct: 366 AIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSH 425

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +  L+ G   H YL      TD  I NAL+DMY+KCG+I  A  VF  M   D+ S+ AM
Sbjct: 426 LAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAM 485

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I+G  IHG   +AL +F ++  +G++PD++TF+ +LS+CSH+GLV EG   F  MSR ++
Sbjct: 486 IIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFS 545

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           + P+ EH  CMVD+ GRAGLI EA   I++MP  PD  +W ALL AC+IH  +EL E V 
Sbjct: 546 IVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVS 605

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           + +    PE  G ++L++NIYS+  RW +A  +R   K+  +KK PGCS +E+ G  + F
Sbjct: 606 KKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAF 665

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             GD+SH +  +I + L+E++ + K  GY
Sbjct: 666 VGGDQSHLQLSQINRKLEELLVEMKRLGY 694



 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 159/492 (32%), Positives = 238/492 (48%), Gaps = 18/492 (3%)

Query: 25  LHQSPRLESSKSVGQLKQFHAFIIKTGSPQ-----HQTQILYDKIISLSRGNEIENLSLQ 79
           LH       SKS+ + K+ H   +K  S       H+   LY     +     + +  + 
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD-EIP 70

Query: 80  NPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           NP V L+N II+  +   P + AI LY  ML  G+ PN YT P+VLKAC    ++  G +
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +H+++    L S+V+V   L+  YA CG++    +LF    H    RD+V+W  +I    
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH----RDVVAWNAMIAGCS 186

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
                 +A+     M +  + P+   +V VL    +   L  G  +H Y     F+    
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFD--NG 244

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-Q 317
           V +   L+DMY KC  +  ARK+FD M V+N VSW++MI G       KEAL++F +M  
Sbjct: 245 VVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMIL 304

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              + P   TL  VL +CA +  L  G+ +H Y+ K     D  +GN L+ MYAKCG ID
Sbjct: 305 KDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVID 364

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F  M  +D  S++A++ G   +G A  AL IF  M   GI+PD  T +GVL ACS
Sbjct: 365 DAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACS 424

Query: 438 HAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           H   ++ G C H   + R +     T     ++D++ + G I  A ++   M    D   
Sbjct: 425 HLAALQHGFCSHGYLIVRGF--ATDTLICNALIDMYSKCGKISFAREVFNRMDR-HDIVS 481

Query: 497 WGALLGACKIHA 508
           W A++    IH 
Sbjct: 482 WNAMIIGYGIHG 493



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 201/417 (48%), Gaps = 29/417 (6%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           ++L+AC QS+SL   +++H + +K    ++  V + L RLY  C  +    +LF    +P
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
                ++ W  +I+AY        AI  +  M    +RP+      VL ACS L  +  G
Sbjct: 73  S----VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
           ++IH +     F L  DVF+  AL+D Y KCG +  A+++F  M  ++VV+WN+MIAG +
Sbjct: 129 VEIHSHA--KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
             G   +A+ +  +MQ  G+ P+  T+V VL +      L  GK +H Y  +   +    
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS-QV 420
           +G  L+DMYAKC  +  A  +F  M  R+  S++AMI G        +AL++F +M  + 
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKD 306

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD---------L 471
            ++P  VT   VL AC+             D+SR   L       G ++D         +
Sbjct: 307 AMDPTPVTLGSVLRACA----------KLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSM 356

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGAC--KIHAKVELAEIVMENLVRFEPE 526
           + + G+I +A+     M    D+  + A++  C    +A V L+   M  L   +P+
Sbjct: 357 YAKCGVIDDAIRFFDEMN-PKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 215/644 (33%), Positives = 331/644 (51%), Gaps = 65/644 (10%)

Query: 20  QQLSLLHQSPR----------LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-- 67
           + L +LH+  R          L S+ +  QL + H+ II  G   H + I   K+I+   
Sbjct: 2   KTLRVLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLG--LHHSVIFSAKLIAKYA 59

Query: 68  -----SRGNEIENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLP 121
                +    +  L+  +  VYL+N II+ L+ N    EA++LY E     L P+TYT P
Sbjct: 60  HFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFP 119

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
            V+ AC       + + +H   +     S++Y+ N L+ +Y     +    K+F      
Sbjct: 120 SVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFE----E 175

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEA-------ILSFFDMCQANLRPDGMILVIVLSACSK 234
              RD+VSW +LI  Y    Y  EA       I  F +M     +PD + +  +L AC  
Sbjct: 176 MPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVN-QFKPDLLTITSILQACGH 234

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           LGDL  G  +H Y+  + +    D    N LI+MY KCGN+ ++++VF  M  K+ VSWN
Sbjct: 235 LGDLEFGKYVHDYMITSGYEC--DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 292

Query: 295 SMIAGLTHRGQFKEALDIFR-------------------------------RMQGLGLKP 323
           SMI      G+  ++L +F                                RM+  G+ P
Sbjct: 293 SMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTP 352

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  T++ +L  C+ +     GK +H  + K  + +D  +GN L++MY+KCG +  +F VF
Sbjct: 353 DMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVF 412

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
           + MK +DV ++TA+I    ++G+  KA+  F EM   GI PD V FV ++ ACSH+GLVE
Sbjct: 413 KLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVE 472

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG  +F  M + Y ++P+ EHY C+VDL  R+ L+ +A D I SMPL PD+ +WGALL A
Sbjct: 473 EGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSA 532

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C++    E+AE V E ++   P+  G Y+L++NIY++  +W +   +RK +K R +KK P
Sbjct: 533 CRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDP 592

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GCS +E+  + Y F  G K   +  E+ KLL  +       GYI
Sbjct: 593 GCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYI 636


>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g50270-like [Glycine max]
          Length = 560

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 204/550 (37%), Positives = 316/550 (57%), Gaps = 23/550 (4%)

Query: 35  KSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENLSL-------QNPQVYL 85
           +++ Q KQ  + I+ +G  S Q    +   K++     ++ +N  L         P   L
Sbjct: 19  QTLEQCKQIQSIIVTSGLYSTQDNNTLFLTKLLQCVPFSQNQNTCLLLLFDTINTPNTRL 78

Query: 86  YNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ---VHAY 142
            N +I   S+  P  ++  Y ++  KG+ P+ +T P +LK   +S    + Q    ++A 
Sbjct: 79  LNKMIAACSH--PHISLLCYAKLRQKGVQPDKHTFPLLLKTFSKS----IAQNPFMIYAQ 132

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
             K     ++++ N L+  +A  G +++  ++F   + P   +D V+WT LI  YVK D 
Sbjct: 133 IFKLGFDLDLFIGNALIPAFANSGFVESARQVFD--ESPF--QDTVAWTALINGYVKNDC 188

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
           P EA+  F  M   +   D + +  +L A + +GD   G  +H +  +    +  D ++ 
Sbjct: 189 PGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAG-RVQLDGYVF 247

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           +AL+DMY KCG+   A KVF+E+P ++VV W  ++AG     +F++AL  F  M    + 
Sbjct: 248 SALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVA 307

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P+DFTL  VL++CA +G L+ G+ VH Y++ N IN +  +G ALVDMYAKCG ID+A  V
Sbjct: 308 PNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLGTALVDMYAKCGSIDEALRV 367

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F +M  ++VY++T +I GLA+HG A  AL+IF  M + GI+P+EVTFVGVL+ACSH G V
Sbjct: 368 FENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSHGGFV 427

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           EEG + F  M   Y+L+P+ +HYGCMVD+ GRAG + +A  +I +MP+ P   V GAL G
Sbjct: 428 EEGKRLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPMKPSPGVLGALFG 487

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           AC +H   E+ E +   LV  +P   G+Y L+ N+Y     W+ A ++RK MK  +V K 
Sbjct: 488 ACLVHKAFEMGEHIGNLLVNQQPNHSGSYALLANLYKMCQNWEAAAQVRKLMKGLRVVKA 547

Query: 563 PGCSLVEVYG 572
           PG S +EV G
Sbjct: 548 PGYSRIEVDG 557


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 208/624 (33%), Positives = 333/624 (53%), Gaps = 39/624 (6%)

Query: 15   DINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQ-ILYDKIISLSRGNEI 73
            D  +F  +S+ H    +     +G  KQ HA+ ++ G  +  T   L      L R N+ 
Sbjct: 430  DPTSFTLVSVAHACSHVRGGVRLG--KQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDA 487

Query: 74   ENL--SLQNPQVYLYNFIIQCLSNANPLEAIALYRE-MLIKGLLPNTYTLPYVLKACWQS 130
            + L        +  +N +I  LS  +  E   +Y   M++ G+ P+  TL  VL AC Q 
Sbjct: 488  KALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQL 547

Query: 131  QSLRVGQQVHAYSMKTA-LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
            + LR+G+++H Y+++   L+ N +V   L+ +Y  C   K    +F        +R +  
Sbjct: 548  ERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFD----GVVRRTVAV 603

Query: 190  WTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
            W  L+  Y + ++  +A+  F +M  ++   P+      VL AC +    S    IH YI
Sbjct: 604  WNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYI 663

Query: 249  TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
                F    D ++ NAL+DMY + G +  ++ +F  M  +++VSWN+MI G    G++ +
Sbjct: 664  VKRGF--GKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDD 721

Query: 309  ALDIFRRMQ------------------GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
            AL++   MQ                  G+  KP+  TL+ VL  CA +  L  GK +H Y
Sbjct: 722  ALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAY 781

Query: 351  LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
              K  +  D  +G+ALVDMYAKCG ++ A  VF  M  R+V ++  +I+   +HGK  +A
Sbjct: 782  AVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEA 841

Query: 411  LDIFSEMSQVG------IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
            L++F  M+  G      I P+EVT++ + +ACSH+G+V+EG   F  M   + ++P+ +H
Sbjct: 842  LELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDH 901

Query: 465  YGCMVDLFGRAGLIREALDLIKSMPL-VPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
            Y C+VDL GR+G ++EA +LI +MP  +     W +LLGAC+IH  VE  EI  ++L   
Sbjct: 902  YACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVL 961

Query: 524  EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
            EP     Y+LM+NIYSS   W +AL +RKKMKE  V+K PGCS +E   E ++F  GD S
Sbjct: 962  EPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDAS 1021

Query: 584  HPKTLEIYKLLDEIMHQSKNHGYI 607
            HP++ E+++ L+ +  + +  GY+
Sbjct: 1022 HPQSKELHEYLETLSQRMRKEGYV 1045



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 214/442 (48%), Gaps = 27/442 (6%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK--TALLSNVYVFNT 157
           +AI+ Y  ML     P+ +  P VLKA      L +G+Q+HA+  K   A  S+V V N+
Sbjct: 313 DAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANS 372

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +Y  CG + A  ++F         RD VSW ++I    + +    ++  F  M   N
Sbjct: 373 LVNMYGKCGDLTAARQVF----DDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSEN 428

Query: 218 LRPDGMILVIVLSACSKL-GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
           + P    LV V  ACS + G + LG ++H Y   N        + +NAL+ MY + G + 
Sbjct: 429 VDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG---DLRTYTNNALVTMYARLGRVN 485

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A+ +F     K++VSWN++I+ L+   +F+EAL     M   G++PD  TL  VL +C+
Sbjct: 486 DAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACS 545

Query: 337 NIGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
            +  L +G+ +H Y  +N  +  + F+G ALVDMY  C +  +   VF  +  R V  + 
Sbjct: 546 QLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWN 605

Query: 396 AMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           A++ G A +    +AL +F EM S+    P+  TF  VL AC         CK F D   
Sbjct: 606 ALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVR-------CKVFSDKEG 658

Query: 455 VYNLQPQ----TEHY--GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           ++    +     + Y    ++D++ R G +  +  +   M    D   W  ++  C +  
Sbjct: 659 IHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMN-KRDIVSWNTMITGCIVCG 717

Query: 509 KVELAEIVMENLVRFEPEGDGA 530
           + + A  ++  + R + E DG+
Sbjct: 718 RYDDALNLLHEMQRRQGE-DGS 738



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 140/256 (54%), Gaps = 2/256 (0%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           +R    W  L+++        +AI ++  M  A   PD      VL A + + DL LG +
Sbjct: 292 RRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQ 351

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303
           IH ++          V + N+L++MY KCG++ +AR+VFD++P ++ VSWNSMIA L   
Sbjct: 352 IHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRF 411

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI-GWLELGKWVHTYLDKNHINTDGFI 362
            +++ +L +FR M    + P  FTLV V ++C+++ G + LGK VH Y  +N  +   + 
Sbjct: 412 EEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYT 470

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
            NALV MYA+ GR++ A  +F     +D+ S+  +I  L+ + +  +AL     M   G+
Sbjct: 471 NNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGV 530

Query: 423 EPDEVTFVGVLSACSH 438
            PD VT   VL ACS 
Sbjct: 531 RPDGVTLASVLPACSQ 546



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 5/192 (2%)

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W  ++   TH   F++A+  +  M      PD+F    VL + A +  L LGK +H ++ 
Sbjct: 298 WIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVF 357

Query: 353 K-NHINTDGF-IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           K  H       + N+LV+MY KCG +  A  VF  +  RD  S+ +MI  L    +   +
Sbjct: 358 KFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELS 417

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHA-GLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           L +F  M    ++P   T V V  ACSH  G V  G +      R  +L+  T +   +V
Sbjct: 418 LHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNN--ALV 475

Query: 470 DLFGRAGLIREA 481
            ++ R G + +A
Sbjct: 476 TMYARLGRVNDA 487


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 206/573 (35%), Positives = 317/573 (55%), Gaps = 13/573 (2%)

Query: 41  KQFHAFIIKTGSPQH---QTQI--LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           K+FHA +IK G        T +  +Y K  S+    ++ +  L    V  +N +I   + 
Sbjct: 182 KEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFD-GLYKRDVSTFNVMIGGYAK 240

Query: 96  ANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           +   E A  L+  M  +G  PN  +   +L  C   ++L  G+ VHA  M T L+ +V V
Sbjct: 241 SGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRV 300

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
              L+R+Y  CG I+   ++F         RD+VSWT +I+ Y +     +A   F  M 
Sbjct: 301 ATALIRMYMGCGSIEGARRVFD----KMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQ 356

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  ++PD +  + +++AC+   DLSL  +IH  +    F    D+ +  AL+ MY KCG 
Sbjct: 357 EEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFG--TDLLVDTALVHMYAKCGA 414

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I  AR+VFD M  ++VVSW++MI      G  +EA + F  M+   ++PD  T + +LN+
Sbjct: 415 IKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNA 474

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           C ++G L+LG  ++T   K  + +   +GNAL++M  K G I++A  +F +M  RDV ++
Sbjct: 475 CGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTW 534

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
             MI G ++HG A +ALD+F  M +    P+ VTFVGVLSACS AG VEEG + F  +  
Sbjct: 535 NVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLD 594

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
              + P  E YGCMVDL GRAG + EA  LI  MPL P++ +W  LL AC+I+  +++AE
Sbjct: 595 GRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAE 654

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
              E  +  EP     Y+ ++++Y++   W+   K+RK M+ R V+K  GC+ +EV G+ 
Sbjct: 655 RAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKL 714

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + F   D+SHP+  EIY  L  +M   K  GYI
Sbjct: 715 HTFVVEDRSHPQAGEIYAELARLMTAIKREGYI 747



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/528 (28%), Positives = 260/528 (49%), Gaps = 24/528 (4%)

Query: 7   VASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS 66
           +  GS + D  T+ +L       R    +  G  KQ    II++G   +  ++  + +I 
Sbjct: 52  LGEGSNHIDSRTYVKLF-----QRCMMLRDAGLGKQVRDHIIQSGRQLNIYEL--NTLIK 104

Query: 67  LSR--GNEIENL----SLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYT 119
           L    GN +E      S++N  V  +N II   +    + EA AL+R+M+ + + P+  T
Sbjct: 105 LHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIIT 164

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
              VL AC     L++G++ HA  +K   +S+  +   L+ +Y   G +    ++F    
Sbjct: 165 FLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVF---- 220

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
               +RD+ ++  +I  Y K     +A   F+ M Q   +P+ +  + +L  CS    L+
Sbjct: 221 DGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALA 280

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G  +H    +    L  DV +  ALI MY+ CG+I  AR+VFD+M V++VVSW  MI G
Sbjct: 281 WGKAVHAQCMNT--GLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRG 338

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
                  ++A  +F  MQ  G++PD  T + ++N+CA+   L L + +H+ + +    TD
Sbjct: 339 YAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTD 398

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             +  ALV MYAKCG I  A  VF +M  RDV S++AMI     +G   +A + F  M +
Sbjct: 399 LLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKR 458

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             +EPD VT++ +L+AC H G ++ G + +    +  +L         ++++  + G I 
Sbjct: 459 NNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKA-DLVSHIPVGNALINMNVKHGSIE 517

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV--RFEP 525
            A  + ++M +  D   W  ++G   +H     A  + + ++  RF P
Sbjct: 518 RARYIFENM-VQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRP 564



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 174/376 (46%), Gaps = 42/376 (11%)

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D    V +   C  L D  LG ++  +I  +   L  +++  N LI ++  CGN+  AR+
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQL--NIYELNTLIKLHSICGNMLEARQ 117

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
            FD +  K VV+WN++IAG    G  KEA  +FR+M    ++P   T + VL++C++   
Sbjct: 118 TFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAG 177

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L+LGK  H  + K    +D  IG ALV MY K G +D A  VF  +  RDV ++  MI G
Sbjct: 178 LKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGG 237

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HA-----GLVEE 444
            A  G   KA  +F  M Q G +P+ ++F+ +L  CS           HA     GLV++
Sbjct: 238 YAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDD 297

Query: 445 ------------GCKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMP- 489
                       GC       RV++     +   +  M+  +     I +A  L  +M  
Sbjct: 298 VRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQE 357

Query: 490 --LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL----MTNIYSSKNR 543
             + PD   +  ++ AC   A + LA  +   +VR    G G  +L    + ++Y+    
Sbjct: 358 EGIQPDRITYIHIINACASSADLSLAREIHSQVVR---AGFGTDLLVDTALVHMYAKCGA 414

Query: 544 WKEALKLRKKMKERKV 559
            K+A ++   M  R V
Sbjct: 415 IKDARQVFDAMSRRDV 430


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 209/587 (35%), Positives = 335/587 (57%), Gaps = 18/587 (3%)

Query: 31  LESSKSVGQLK---QFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIEN-----LSLQNP 81
           L +  SVG L    Q H+  IK G       IL   ++ L S+  ++E      L+ +  
Sbjct: 369 LSACASVGALHKGMQLHSHAIKAGMSA--DIILEGSLLDLYSKCADVETAHKFFLTTETE 426

Query: 82  QVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            + L+N ++      + L ++  ++R+M ++G++PN +T P +L+ C    +L +G+Q+H
Sbjct: 427 NIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIH 486

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            + +KT    NVYV + L+ +YA  G +    ++   R+ P+   D+VSWT +I  YV+ 
Sbjct: 487 THVIKTGFQLNVYVCSVLIDMYAKYGQLALALRIL--RRLPE--DDVVSWTAMIAGYVQH 542

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           D  +EA+  F +M    ++ D +     +SAC+ +  L  G +IH       F    D+ 
Sbjct: 543 DMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFG--ADLS 600

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           I+NALI +Y +CG I  A   F+++  KN +SWNS+++GL   G F+EAL +F RM    
Sbjct: 601 INNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTE 660

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
            + + FT    +++ A++  ++ G+ +H+ + K   +++  + N+L+ +YAK G I  A+
Sbjct: 661 AEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAW 720

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
             F  M  R+V S+ AMI G + HG   +AL +F EM   GI P+ VTFVGVLSACSH G
Sbjct: 721 REFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIG 780

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LV+EG  +F  M ++++L P++EHY C+VDL GRAG +  A++ IK MP+  DA +W  L
Sbjct: 781 LVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTL 840

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           L AC IH  +E+ E    +L+  EPE    Y+L++NIY+   +W      RK MK+R VK
Sbjct: 841 LSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVK 900

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K PG S +EV    + F  GDK HP T +IY+ +  +  ++   GY+
Sbjct: 901 KEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYV 947



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 220/431 (51%), Gaps = 20/431 (4%)

Query: 80  NPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ-SLRVGQ 137
           N  V+ +N +I   ++  +  +   L+R ML +G+ PN YT   VLKAC     +    +
Sbjct: 121 NRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVK 180

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           QVH+ +      S+  V N L+ LY+  G I++  K+F+        +D+V+W  +I   
Sbjct: 181 QVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN----CICMKDIVTWVAMISGL 236

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            +     EAIL F DM  + + P   +L  VLSA +K+    LG ++H  +    F+   
Sbjct: 237 SQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH--S 294

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           + ++ N L+ +Y +   + SA ++F  M  ++ VS+NS+I+GL  +G    AL++F +MQ
Sbjct: 295 ETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQ 354

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              LKPD  T+  +L++CA++G L  G  +H++  K  ++ D  +  +L+D+Y+KC  ++
Sbjct: 355 RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVE 414

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F + +  ++  +  M+V          + +IF +M   G+ P++ T+  +L  C+
Sbjct: 415 TAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCT 474

Query: 438 HAG---LVEEGCKHFLDMSRVYNLQPQTEHYGC--MVDLFGRAGLIREALDLIKSMPLVP 492
             G   L E+   H +      N+      Y C  ++D++ + G +  AL +++ +P   
Sbjct: 475 SLGALYLGEQIHTHVIKTGFQLNV------YVCSVLIDMYAKYGQLALALRILRRLP-ED 527

Query: 493 DAFVWGALLGA 503
           D   W A++  
Sbjct: 528 DVVSWTAMIAG 538



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 236/495 (47%), Gaps = 45/495 (9%)

Query: 102 IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRL 161
           I L   M  +G+  N     ++L+ C  S SL    ++H    K+       + ++L+  
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 162 YAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221
           Y   G      K+F       + R + SW  +I  +V      +    F  M    + P+
Sbjct: 103 YFRHGDQHGAVKVFD----ENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPN 158

Query: 222 GMILVIVLSACSKLGDLSLGI--KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           G     VL AC   GD++     ++H       F+ SP   + N LID+Y K G I SA+
Sbjct: 159 GYTFAGVLKACVG-GDIAFNYVKQVHSRTFYYGFDSSP--LVANLLIDLYSKNGYIESAK 215

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVF+ + +K++V+W +MI+GL+  G  +EA+ +F  M    + P  + L  VL++   I 
Sbjct: 216 KVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQ 275

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
             ELG+ +H  + K   +++ ++ N LV +Y++  ++  A  +F +M  RD  SY ++I 
Sbjct: 276 LFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLIS 335

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK------------ 447
           GL   G + +AL++F++M +  ++PD +T   +LSAC+  G + +G +            
Sbjct: 336 GLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSA 395

Query: 448 ------HFLDM---------SRVYNLQPQTEH---YGCMVDLFGRAGLIREALDLIKSMP 489
                   LD+         +  + L  +TE+   +  M+  +G+   + ++ ++ + M 
Sbjct: 396 DIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQ 455

Query: 490 ---LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI--LMTNIYSSKNRW 544
              ++P+ F + ++L  C     + L E +  ++++   + +  Y+  ++ ++Y+   + 
Sbjct: 456 MEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLN-VYVCSVLIDMYAKYGQL 514

Query: 545 KEALKLRKKMKERKV 559
             AL++ +++ E  V
Sbjct: 515 ALALRILRRLPEDDV 529


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 195/539 (36%), Positives = 301/539 (55%), Gaps = 66/539 (12%)

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL--IKAVHKLFHFRQHPQAQRDL 187
           S SL   +QVHA +++T    + YV  TL++ YA      +    K+F +  +P    ++
Sbjct: 40  STSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNP----NV 95

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
             +  +I+  ++ + P +AI  ++ M  A+ RP+      +  AC+       G+++H +
Sbjct: 96  FVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAH 155

Query: 248 IT------DNHF-----------------------NLSPDVFIHNALIDMYLKCGN---- 274
           +       D H                        + + DV   NA+ID YLKCG     
Sbjct: 156 VIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAA 215

Query: 275 ---------------------------IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
                                      I  AR++F+EM  KN +SW++MI G    G +K
Sbjct: 216 KELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYK 275

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           EAL++F  MQ   ++P  F L  VL +CAN+G L+ G+W+H Y++ N  + D  +G ALV
Sbjct: 276 EALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALV 335

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           DMYAKCGR+D A+ VF  M+ ++V+++ AMI GL +HG+A  A+++F +M +    P+ +
Sbjct: 336 DMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGI 395

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           T +GVLSAC+H+G+V+EG + F  M  VY ++P  EHYGC+VDL GRAGL+ EA +++ S
Sbjct: 396 TLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYS 455

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
           MP+ P A VWGALLGAC+ H  VEL E V + L+  EP+  G Y L++NIY+   RW + 
Sbjct: 456 MPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDV 515

Query: 548 LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             +RK MKER VK + G S+++  G  +EF+ GD SHP+   IY +L  ++ + K  G+
Sbjct: 516 ANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGF 574



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 149/580 (25%), Positives = 248/580 (42%), Gaps = 131/580 (22%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQ--------NPQV 83
           +SS S+  LKQ HA  ++TG    Q   +   ++         NL+          NP V
Sbjct: 38  KSSTSLHHLKQVHAVALRTG--HFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNV 95

Query: 84  YLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           +++N II+ CL N  P +AI  Y +M+I    PN +T P + KAC  +++   G QVHA+
Sbjct: 96  FVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAH 155

Query: 143 SMKTALLSNVYV-------------------------------FNTLMRLYAVCGLIKAV 171
            +K  L  +V++                               FN ++  Y  CG ++A 
Sbjct: 156 VIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAA 215

Query: 172 HKLFHFRQ---------------------------HPQAQRDLVSWTTLIQAYVKMDYPT 204
            +LF   +                           +   +++ +SW+ +I  Y+K  Y  
Sbjct: 216 KELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYK 275

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EA+  F  M +  +RP   +L  VL+AC+ LG L  G  IH Y+ +N  + S D  +  A
Sbjct: 276 EALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNN--SNSFDAVLGTA 333

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L+DMY KCG +  A  VF++M  K V +WN+MI GL   G+ ++A+++F +MQ    +P+
Sbjct: 334 LVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPN 393

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVF 383
             TL+ VL++CA+ G ++ G  +   +++ +    G      +VD+  + G + +A  V 
Sbjct: 394 GITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVM 453

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
            SM                                   +EP    +  +L AC   G VE
Sbjct: 454 YSMP----------------------------------MEPSAAVWGALLGACRKHGDVE 479

Query: 444 EGCKHFLDMSRV----YNLQPQTE-HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
            G        RV      L+PQ    Y  + +++ RAG   +  ++ K            
Sbjct: 480 LG-------ERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRK------------ 520

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            L+    +     ++ I  + +V     GDG++  M NIY
Sbjct: 521 -LMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIY 559


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 190/532 (35%), Positives = 290/532 (54%), Gaps = 7/532 (1%)

Query: 76  LSLQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
           + +++P V  ++ II CL       EA  +++ M   G++PN +TL  ++ A      L 
Sbjct: 389 VRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLY 448

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
            G+ +HA   K     +  V N L+ +Y   G ++   ++F         RDL+SW  L+
Sbjct: 449 YGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFE----ATTNRDLISWNALL 504

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
             +   +     +  F  M      P+    + +L +CS L D+ LG ++H  I  N  +
Sbjct: 505 SGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN--S 562

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           L  + F+  AL+DMY K   +  A  +F+ +  +++ +W  ++AG    GQ ++A+  F 
Sbjct: 563 LDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFI 622

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           +MQ  G+KP++FTL   L+ C+ I  L+ G+ +H+   K   + D F+ +ALVDMYAKCG
Sbjct: 623 QMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCG 682

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            ++ A  VF  +  RD  S+  +I G + HG+  KAL  F  M   G  PDEVTF+GVLS
Sbjct: 683 CVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLS 742

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           ACSH GL+EEG KHF  +S++Y + P  EHY CMVD+ GRAG   E    I+ M L  + 
Sbjct: 743 ACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNV 802

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            +W  +LGACK+H  +E  E     L   EPE D  YIL++N++++K  W +   +R  M
Sbjct: 803 LIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALM 862

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             R VKK PGCS VEV G+ + F   D SHPK  EI+  L ++  +  + GY
Sbjct: 863 STRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGY 914



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/319 (33%), Positives = 171/319 (53%), Gaps = 8/319 (2%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+ C     L  G+ +H   +K+ +  + +++N+L+ +YA CG      K+F   + P+
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFG--EIPE 191

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
             RD+VSWT LI  +V   Y + A+  F +M +  +  +       L ACS   DL  G 
Sbjct: 192 --RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGK 249

Query: 243 KIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
           ++H   I    F+   D+F+ +AL+D+Y KCG +  A +VF  MP +N VSWN+++ G  
Sbjct: 250 QVHAEAIKVGDFS---DLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFA 306

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
             G  ++ L++F RM G  +    FTL  VL  CAN G L  G+ VH+   +     D F
Sbjct: 307 QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEF 366

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           I   LVDMY+KCG    A  VF  ++  DV S++A+I  L   G++ +A ++F  M   G
Sbjct: 367 ISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSG 426

Query: 422 IEPDEVTFVGVLSACSHAG 440
           + P++ T   ++SA +  G
Sbjct: 427 VIPNQFTLASLVSAATDLG 445



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 209/428 (48%), Gaps = 13/428 (3%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+ L+ EM  +G+  N +T    LKAC     L  G+QVHA ++K    S+++V + L+ 
Sbjct: 213 AVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVD 272

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           LYA CG +    ++F        +++ VSW  L+  + +M    + +  F  M  + +  
Sbjct: 273 LYAKCGEMVLAERVFLC----MPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINF 328

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
               L  VL  C+  G+L  G  +H            D FI   L+DMY KCG    A K
Sbjct: 329 SKFTLSTVLKGCANSGNLRAGQIVHSLAI--RIGCELDEFISCCLVDMYSKCGLAGDALK 386

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VF  +   +VVSW+++I  L  +GQ +EA ++F+RM+  G+ P+ FTL  ++++  ++G 
Sbjct: 387 VFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGD 446

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L  G+ +H  + K     D  + NALV MY K G +     VF +   RD+ S+ A++ G
Sbjct: 447 LYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSG 506

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
              +      L IF++M   G  P+  TF+ +L +CS    V+ G +  +    V N   
Sbjct: 507 FHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ--VHAQIVKNSLD 564

Query: 461 QTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
             +  G  +VD++ +   + +A  +   + +  D F W  ++     +A+    E  ++ 
Sbjct: 565 GNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAG---YAQDGQGEKAVKC 620

Query: 520 LVRFEPEG 527
            ++ + EG
Sbjct: 621 FIQMQREG 628


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 215/610 (35%), Positives = 350/610 (57%), Gaps = 32/610 (5%)

Query: 1   MASPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL 60
           M S L V + S  +    F++   L   P+     ++ Q+KQ HA II+     HQ   +
Sbjct: 1   MTSSLPVRAPSWVSSRRIFEER--LQDLPK---CANLNQVKQLHAQIIRRN--LHQDLHI 53

Query: 61  YDKIISLSRGNEIENLSL------QNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGL 113
             K+IS        NL+L      Q P V+L N +I+  + N+ P +A  ++ EM   GL
Sbjct: 54  APKLISALSLCRQTNLALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGL 113

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL--IKAV 171
             + +T P++LKAC     L V + +H +  K  L S++YV N L+  Y+ CG   ++  
Sbjct: 114 FADNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDA 173

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
            KLF       ++RD VSW +++   VK     +A   F +M Q +L    +    +L  
Sbjct: 174 MKLFE----KMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDL----ISWNTMLDG 225

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP--VKN 289
            ++  ++S   ++   + +       +    + ++  Y K G++  AR +FD+MP   KN
Sbjct: 226 YARCREMSRAFELFEKMPER------NTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKN 279

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           VV+W  +IAG   +G  KEA  +  +M   GL+ D    + +L +CA  G L LG   H+
Sbjct: 280 VVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGMRAHS 339

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
            + K+++N++  + NAL+DMYAKCG + +AF VF  M  +D+ S+  M+ GL +HG   +
Sbjct: 340 IIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKE 399

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           A+++FS M + GI PD+VTF+ VL +C+HAGL++EG  +F  M +VY+L P+ EHYGC+V
Sbjct: 400 AIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLV 459

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL GR G ++EA+ ++++MP+ P+  +WGALLGAC++H +V++A+ V++NLV+ +P   G
Sbjct: 460 DLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPSDPG 519

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y L++NIY++   W+    +R KMK   V+K  G S VE+    +EF   DKSHPK+ +
Sbjct: 520 NYTLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQ 579

Query: 590 IYKLLDEIMH 599
           IY++L  ++ 
Sbjct: 580 IYQMLGSLIE 589


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 190/559 (33%), Positives = 330/559 (59%), Gaps = 24/559 (4%)

Query: 51  GSPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLE-AIALYREML 109
           GSP   +++++DK              L+   ++ +N I+   +     E A++++ E++
Sbjct: 155 GSPS-DSRMVFDK--------------LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 199

Query: 110 -IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI 168
            +    P+ +TLP V+KAC     L +GQ +H  + K  L+S+V+V N L+ +Y  CGL+
Sbjct: 200 SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 259

Query: 169 K-AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           + AV ++F         + + SW  L+  Y +   P +A+  +  M  + L PD   +  
Sbjct: 260 EEAVKRVFDLMD----TKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGS 315

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +L ACS++  L  G +IH +   N   L+ D FI  +L+ +Y+ CG   +A+ +FD M  
Sbjct: 316 LLLACSRMKSLHYGEEIHGFALRN--GLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEH 373

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           +++VSWN MIAG +  G   EA+++FR+M   G++P +  ++CV  +C+ +  L LGK +
Sbjct: 374 RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKEL 433

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H +  K H+  D F+ ++++DMYAK G I  +  +F  ++ +DV S+  +I G  IHG+ 
Sbjct: 434 HCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRG 493

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            +AL++F +M ++G++PD+ TF G+L ACSHAGLVE+G ++F  M  ++N++P+ EHY C
Sbjct: 494 KEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTC 553

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           +VD+ GRAG I +AL LI+ MP  PD+ +W +LL +C+IH  + L E V   L+  EPE 
Sbjct: 554 VVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEK 613

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
              Y+L++N+++   +W +  ++R +MK+  ++K  GCS +EV G+ + F  GD+  P+ 
Sbjct: 614 PENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPEL 673

Query: 588 LEIYKLLDEIMHQSKNHGY 606
            E+ +    +  +  + GY
Sbjct: 674 EEVRETWRRLEVKISSIGY 692



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 229/471 (48%), Gaps = 46/471 (9%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT-LMRLYAVCGLIKAVHKLFHFRQHP 181
           +L+AC Q + + VG+++H     +    N +V NT ++ +Y++CG       +F   +  
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLR-- 168

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL-RPDGMILVIVLSACSKLGDLSL 240
             +++L  W  ++ AY + +   +A+  F ++      +PD   L  V+ AC+ L DL L
Sbjct: 169 --RKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGL 226

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA-RKVFDEMPVKNVVSWNSMIAG 299
           G  IH   T    +L  DVF+ NALI MY KCG +  A ++VFD M  K V SWN+++ G
Sbjct: 227 GQIIHGMAT--KMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCG 284

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
                  ++ALD++ +M   GL PD FT+  +L +C+ +  L  G+ +H +  +N +  D
Sbjct: 285 YAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVD 344

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            FIG +L+ +Y  CG+   A  +F  M+ R + S+  MI G + +G   +A+++F +M  
Sbjct: 345 PFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLS 404

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEG------------------CKHFLDM--------- 452
            GI+P E+  + V  ACS    +  G                      +DM         
Sbjct: 405 DGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGL 464

Query: 453 -SRVYN--LQPQTEHYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKI 506
             R+++   +     +  ++  +G  G  +EAL+L + M    L PD F +  +L AC  
Sbjct: 465 SQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSH 524

Query: 507 HAKVELAEIV---MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
              VE        M NL   EP+ +  Y  + ++     R  +AL+L ++M
Sbjct: 525 AGLVEDGLEYFNQMLNLHNIEPKLE-HYTCVVDMLGRAGRIDDALRLIEEM 574



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 125/213 (58%), Gaps = 3/213 (1%)

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
           ++L AC +  D+ +G ++H  ++ +      D  ++  +I MY  CG+   +R VFD++ 
Sbjct: 110 VLLQACGQRKDIEVGRRLHEMVSAST-QFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLR 168

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL-KPDDFTLVCVLNSCANIGWLELGK 345
            KN+  WN++++  T    F++A+ IF  +  +   KPD+FTL CV+ +CA +  L LG+
Sbjct: 169 RKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQ 228

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG-VFRSMKCRDVYSYTAMIVGLAIH 404
            +H    K  + +D F+GNAL+ MY KCG +++A   VF  M  + V S+ A++ G A +
Sbjct: 229 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQN 288

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
               KALD++ +M+  G++PD  T   +L ACS
Sbjct: 289 SDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 321


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 196/533 (36%), Positives = 310/533 (58%), Gaps = 26/533 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL-LSNVYVFNTL 158
           EAI+ Y EM + G  P+ +  P VLKA    Q L+ G+Q+HA ++K     S+V V NTL
Sbjct: 75  EAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTL 134

Query: 159 MRLYAVCG-----------LIKAVHKLFHFRQHPQ-----AQRDLVSWTTLIQAYVKMDY 202
           + +Y  CG           L+    KL               RD+VSW T+I ++ + D 
Sbjct: 135 VNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDR 194

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
            +EA+  F  M    +  DG+ +  VL ACS L  L +G +IH Y+  N+ +L  + F+ 
Sbjct: 195 FSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNN-DLIENSFVG 253

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGL 321
           +AL+DMY  C  + S R+VFD +  + +  WN+MI+G    G  ++AL +F  M +  GL
Sbjct: 254 SALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGL 313

Query: 322 KPDDFTLVCVLNSCA-NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
            P+  T+  V+ +C  ++  +  GK +H Y  +N + +D  +G+ALVDMYAKCG ++ + 
Sbjct: 314 LPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSR 373

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVG----IEPDEVTFVGVLSA 435
            VF  M  ++V ++  +I+   +HGK  +AL++F  M ++ G     +P+EVTF+ V +A
Sbjct: 374 RVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAA 433

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           CSH+GL+ EG   F  M   + ++P ++HY C+VDL GRAG + EA +L+ +MP   D  
Sbjct: 434 CSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKV 493

Query: 496 -VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
             W +LLGAC+IH  VEL E+  +NL+  EP     Y+L++NIYSS   W +A+++RK M
Sbjct: 494 GAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNM 553

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           ++  VKK PGCS +E   E ++F  GD SHP++ +++  L+ +  + +  GY+
Sbjct: 554 RQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYV 606



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 183/399 (45%), Gaps = 28/399 (7%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
            R   SW   +++  + +   EAI ++ +M  +  RPD      VL A S L DL  G +
Sbjct: 54  SRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 244 IHRYITDNHFNLSP-------------------DVFIHNALIDMYLKCGNIPSARKVFDE 284
           IH       +  S                      F +NAL+ MY K G +  ++ +F+ 
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFES 173

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
              +++VSWN+MI+  +   +F EAL  FR M   G++ D  T+  VL +C+++  L++G
Sbjct: 174 FVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVG 233

Query: 345 KWVHTY-LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           K +H Y L  N +  + F+G+ALVDMY  C +++    VF  +  R +  + AMI G A 
Sbjct: 234 KEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYAR 293

Query: 404 HGKAWKALDIFSEMSQV-GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
           +G   KAL +F EM +V G+ P+  T   V+ AC H+       K     +    L    
Sbjct: 294 NGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDI 353

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
                +VD++ + G +  +  +   MP   +   W  L+ AC +H K E A  + +N+V 
Sbjct: 354 TVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHGKGEEALELFKNMVA 412

Query: 523 FEPEGDGA------YILMTNIYSSKNRWKEALKLRKKMK 555
               G  A      +I +    S      E L L  +MK
Sbjct: 413 EAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMK 451



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 57/285 (20%)

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
           P ++  SW   +   T    F+EA+  +  M   G +PD+F    VL + + +  L+ G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 346 WVHT---------------------YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
            +H                      Y     I    F  NAL+ MYAK GR+D +  +F 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
           S   RD+ S+  MI   +   +  +AL  F  M   G+E D VT   VL ACSH   ++ 
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 445 G-----------------------------CKHFLDMSRVYN--LQPQTEHYGCMVDLFG 473
           G                             C+      RV++  L  + E +  M+  + 
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYA 292

Query: 474 RAGLIREAL----DLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
           R GL  +AL    ++IK   L+P+     +++ AC +H+   +A+
Sbjct: 293 RNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC-VHSLAAIAK 336


>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
 gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
          Length = 767

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 192/529 (36%), Positives = 314/529 (59%), Gaps = 8/529 (1%)

Query: 81  PQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           P  + YN  I+  +++ P  ++ L+  ML   + P++YTLP++L A  +  +  + +  H
Sbjct: 116 PTAFSYNVAIRFFASSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAH 175

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           A   K  L  + +  ++L+ +Y+      A  K+F         RD+VSW  +++AY ++
Sbjct: 176 ALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFD----GIPTRDVVSWNAMMKAYGRV 231

Query: 201 DYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
               E    F DM  +  + P+ + + +VL+AC   GDL LG  +  +       +  D 
Sbjct: 232 GMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEM--DS 289

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            + +AL+ MY KCG I  AR+VFD +  K++V+WN+MI G    G   EA+ +F  M+  
Sbjct: 290 LVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIA 349

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G++PD  TL  VL++C+ +G LELG  +  Y  +  + ++ ++G ALVDMYAKCG +D+A
Sbjct: 350 GMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKA 409

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSH 438
             VFR M C++V S+ A+I GLA +G+  +A+  F  M ++ G++PD++TF+GVLSAC H
Sbjct: 410 IEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVH 469

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           AGLV++G + F  ++  + + P+ EHY CMVDL  R+G + EA D I+ +P   DA + G
Sbjct: 470 AGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLG 529

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           ALL AC+    VE+ E V+  +++ EP     Y++ + IY+S +R  ++ K+R  M+ER 
Sbjct: 530 ALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERG 589

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           V KTPGCS VEV G+  EF  GD+      ++Y++LD ++ + +  GY+
Sbjct: 590 VNKTPGCSWVEVSGKVLEFYAGDEPQHGADDMYQVLDLLVDEMRLEGYV 638


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 209/643 (32%), Positives = 350/643 (54%), Gaps = 74/643 (11%)

Query: 36  SVGQLKQFHAFIIKTGS---PQHQTQILYDKIISLSRGNEIE---NLSLQNP---QVYLY 86
           SV Q  + HA +  +G    P     +L      +S  + +     LSL +      +L+
Sbjct: 11  SVRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRMPCSTFLF 70

Query: 87  NFIIQCL--SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQS-LRVGQQVHAYS 143
           +  ++    +++ P   I LYR M    + P+ +T  ++ K C +  + + +G+ +HA  
Sbjct: 71  DTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAAC 130

Query: 144 MKTALLSNV-YVFNTLMRLYAVCGLIKAVHKLFH-------------------------- 176
            +T L S V  + + ++ +YA  GL     + F                           
Sbjct: 131 FRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDA 190

Query: 177 FRQHPQAQ-RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
            R   +A  R++V+WT LI  Y +     EA+  F  M    + PD + ++ +LSAC +L
Sbjct: 191 RRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQL 250

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD------------ 283
            DL+ G  +H  + D    +S  + +  ALIDMY KCG+   AR+VFD            
Sbjct: 251 KDLNFGCSLHMLVGDKRMLMSDKLVV--ALIDMYAKCGDTGRAREVFDALGRGRGPQPWN 308

Query: 284 --------------------EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
                               +M   +V+++NS+I G  H G+ +EAL +F +M+  GL  
Sbjct: 309 AMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGA 368

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D+FT+V +L + A++G L  G+ +H  +++  +  D ++G AL+DMY KCGR+++A   F
Sbjct: 369 DNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAF 428

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
           + M  RDV++++AMI GLA +G    AL+ F  M   G   + VT++ VL+ACSH+ L++
Sbjct: 429 KQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLD 488

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG  +F +M  ++N++PQ EHYGCM+DL GR+GL+ EA+DL+++MP+ P+A +W ++L A
Sbjct: 489 EGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSA 548

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C++H  V+LA+    +L++ EP  D  Y+ M NIY    +W++A K+R+ M++R VKKT 
Sbjct: 549 CRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKTA 608

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           G S + V G+ ++F  GD+SHP+  EI  +++EI  + K+ GY
Sbjct: 609 GYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGY 651



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 149/363 (41%), Gaps = 51/363 (14%)

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS-------ARKVFDEMPVK 288
           G +    ++H  +T +   L P    H  L++    C + PS       A  +FD MP  
Sbjct: 10  GSVRQATELHALVTTSGRLLHPPSAAH--LLNSLTSCIS-PSDPLHLRYALSLFDRMPCS 66

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW-LELGKWV 347
             +   ++ A           + ++RRM G+ + PD FT   +   CA  G  + LG+ +
Sbjct: 67  TFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRML 126

Query: 348 HTYLDKNHINTD-GFIGNALVDMY-------------------------------AKCGR 375
           H    +  + +    I + ++ MY                               AK G 
Sbjct: 127 HAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGL 186

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +D A  +      R+V ++T +I G +  G+A +A+D F+ M   GI PDEVT +G+LSA
Sbjct: 187 LDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSA 246

Query: 436 CSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           C     +  GC  H L   +   +  +      ++D++ + G    A ++  ++      
Sbjct: 247 CGQLKDLNFGCSLHMLVGDKRMLMSDKL--VVALIDMYAKCGDTGRAREVFDALGRGRGP 304

Query: 495 FVWGALL-GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
             W A++ G CK+   V++A  + + +   E      +  +   Y    R +EAL L  K
Sbjct: 305 QPWNAMIDGYCKV-GHVDIARSLFDQM---EDHDVITFNSLITGYIHGGRLREALLLFTK 360

Query: 554 MKE 556
           M+ 
Sbjct: 361 MRR 363


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 208/600 (34%), Positives = 330/600 (55%), Gaps = 35/600 (5%)

Query: 20  QQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS-------LSRGNE 72
           ++L  LH+   L+S      + Q HA ++K     HQ   +  K+I+       L+    
Sbjct: 23  EKLCDLHKCSNLDS------VNQIHAQVLKAN--LHQDLFVAPKLIAAFSLCRHLASAVN 74

Query: 73  IENLSLQNPQVYLYNFIIQCLSN--ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQS 130
           + N  + +P V+LYN II+  ++  ++P      + +M   GL P+ +T P++LKAC   
Sbjct: 75  VFN-HVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGP 133

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL--IKAVHKLFHFRQHPQAQRDLV 188
            SL + + +HA+  K     +++V N+L+  Y+ CG   +     LF        +RD+V
Sbjct: 134 SSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFL----AMKERDVV 189

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
           +W ++I   V+      A   F +M + ++    +    +L   +K G++    ++   +
Sbjct: 190 TWNSMIGGLVRCGELEGACKLFDEMPERDM----VSWNTMLDGYAKAGEMDRAFELFERM 245

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
                    ++   + ++  Y K G++  AR +FD  P KNVV W ++IAG   +G  +E
Sbjct: 246 PQR------NIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVRE 299

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A +++ +M+  GL+PDD  L+ +L +CA  G L LGK +H  + +        + NA +D
Sbjct: 300 ATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFID 359

Query: 369 MYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           MYAKCG +D AF VF  M  + DV S+ +MI G A+HG   KAL++FS M   G EPD  
Sbjct: 360 MYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTY 419

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           TFVG+L AC+HAGLV EG K+F  M +VY + PQ EHYGCM+DL GR G ++EA  L++S
Sbjct: 420 TFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRS 479

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
           MP+ P+A + G LL AC++H  V+ A  V E L + EP   G Y L++NIY+    W   
Sbjct: 480 MPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNV 539

Query: 548 LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             +R +M     +K  G S +EV  E +EF   D+SHPK+ +IYK++D ++   +  GY+
Sbjct: 540 ANVRLQMMNTGGQKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYKMIDRLVQDLRQVGYV 599


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 192/510 (37%), Positives = 294/510 (57%), Gaps = 10/510 (1%)

Query: 101 AIALYREMLIK--GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF-NT 157
              LY   LI+   L+P+      +LK C +   +  G+ VHA+ + +  L N  V  N 
Sbjct: 69  GTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNI 128

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           ++ +YA CG +    ++F         +D+V+WT LI  + + + P +A+L F  M +  
Sbjct: 129 IVNMYAKCGCLDDARRMFD----EMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG 184

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
            +P+   L  +L A      L  G ++H +     +  S  V++ +AL+DMY +CG++ +
Sbjct: 185 FQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSS--VYVGSALVDMYARCGHMDA 242

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A+  FD MP K+ VSWN++I+G   +G+ + AL +  +MQ    +P  FT   VL++CA+
Sbjct: 243 AQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACAS 302

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           IG LE GKWVH ++ K+ +    FIGN L+DMYAK G ID A  VF  +   DV S+  M
Sbjct: 303 IGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTM 362

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           + G A HG   + LD F +M ++GIEP+E++F+ VL+ACSH+GL++EG  +F ++ + Y 
Sbjct: 363 LTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYF-ELMKKYK 421

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           ++P   HY   VDL GR GL+  A   I+ MP+ P A VWGALLGAC++H  +EL     
Sbjct: 422 VEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAA 481

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           E     +P   G  +L++NIY+S  RW++  K+RK MKE  VKK P CS VE+    + F
Sbjct: 482 ERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLF 541

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              D++HP+  EI    +EI  + K  GY+
Sbjct: 542 VANDETHPRIKEIRGKWEEISGKIKEIGYV 571



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 154/306 (50%), Gaps = 6/306 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N  P +A+ L+ +ML  G  PN +TL  +LKA      L  G Q+HA+ +K    S+VYV
Sbjct: 167 NNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYV 226

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +YA CG + A    F         +  VSW  LI  + +      A+   + M 
Sbjct: 227 GSALVDMYARCGHMDAAQLAF----DGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQ 282

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           + N +P       VLSAC+ +G L  G  +H ++  +   L    FI N L+DMY K G+
Sbjct: 283 RKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLI--AFIGNTLLDMYAKAGS 340

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I  A++VFD +   +VVSWN+M+ G    G  KE LD F +M  +G++P++ + +CVL +
Sbjct: 341 IDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTA 400

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           C++ G L+ G +    + K  +  D       VD+  + G +D+A    R M      + 
Sbjct: 401 CSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAV 460

Query: 395 TAMIVG 400
              ++G
Sbjct: 461 WGALLG 466


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 222/589 (37%), Positives = 318/589 (53%), Gaps = 22/589 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQI------LYDKIISLSRGNEIENLSLQNPQVY 84
           LE+ K  G   + HAF+I++G    Q  I      +Y K  +++    +  L + N    
Sbjct: 400 LENGKRKGS--EVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRL-MDNKDSV 456

Query: 85  LYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            +N +I  L  N   LEA+  ++EM    L P+ +T+   L +C     + VG+Q+H   
Sbjct: 457 TWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEG 516

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K  L  +V V N L+ LY  CG +K   K F          D VSW +LI A    + P
Sbjct: 517 LKLGLDLDVSVSNALLALYGECGYVKECQKAFSL----MLDYDHVSWNSLIGALADSE-P 571

Query: 204 T--EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           +  EA+ SF  M +A   P+ +  + +L+A S L    LG +IH  +     N++ D  I
Sbjct: 572 SMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKR--NVAADTAI 629

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
            NAL+  Y KCG++     +F  M  + + VSWNSMI+G  H     +A+D+   M   G
Sbjct: 630 ENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKG 689

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
            + D FT   VL++CA +  LE G  VH    +  + +D  IG+ALVDMYAKCGRID A 
Sbjct: 690 QRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYAS 749

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
             F  M  R++YS+ +MI G A HG   K+LD+F++M   G  PD VTFVGVLSACSHAG
Sbjct: 750 RFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAG 809

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LV EG  HF  MS +Y L P+ EH+ CMVDL GR G + +  D +  MP+ P+  +W  +
Sbjct: 810 LVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTV 869

Query: 501 LGA-CKIHAK-VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           LGA C+ + +   L     E L+  EP     YIL++N+Y+S  +W +  K R  M++  
Sbjct: 870 LGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAF 929

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           VKK  GCS V +    + F  GDKSHP+   IY+ L E+  + +  GYI
Sbjct: 930 VKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYI 978



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 218/465 (46%), Gaps = 37/465 (7%)

Query: 60  LYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTY 118
           +Y ++  L  G ++ + + L+N  V     I     N  P EA  L+R+M+  G +PN Y
Sbjct: 117 IYARVGDLGSGRKVFDEMPLRN-LVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHY 175

Query: 119 TLPYVLKACWQ--SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYA-VCGLIKAVHKLF 175
               V++AC +     L+ G Q+H    KT  +++V   N L+ +Y    G++    + F
Sbjct: 176 AFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAF 235

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA----NLRPDGMILVIVLSA 231
                    R+LVS  ++I  Y +      A   F  M +      L+P+      ++SA
Sbjct: 236 ----DSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISA 291

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
              L +  L +               D+++ +AL+  + K G+I  A+ +F +M  +NVV
Sbjct: 292 TCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVV 351

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQ-GLGLKPDDFTLVCVLNSCANIGWLELGKW---- 346
           S N +I GL  + + +EA+++F  M+  + L P+ + +  +L +      LE GK     
Sbjct: 352 SLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMI--ILTAFPEFHVLENGKRKGSE 409

Query: 347 VHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
           VH +L ++  +N    IGN L++MYAKCG I+ A  VFR M  +D  ++ +MI GL  + 
Sbjct: 410 VHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNK 469

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE-------EGCKHFLDMSRVYNL 458
           +  +A+  F EM +  + P   T +  LS+C+  G +        EG K  LD+      
Sbjct: 470 QFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDL------ 523

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
                    ++ L+G  G ++E      S+ L  D   W +L+GA
Sbjct: 524 --DVSVSNALLALYGECGYVKECQKAF-SLMLDYDHVSWNSLIGA 565



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 192/382 (50%), Gaps = 27/382 (7%)

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            +++H    K   ++++++ NTL+ +YA  G + +  K+F         R+LVSW+ LI 
Sbjct: 92  AEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFD----EMPLRNLVSWSCLIS 147

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD--LSLGIKIHRYITDNHF 253
            Y +   P EA   F  M      P+      V+ AC + G+  L  G++IH  ++   +
Sbjct: 148 GYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQY 207

Query: 254 NLSPDVFIHNALIDMYLKC-GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
               DV   N LI MY    G +  AR+ FD +  +N+VS NSMI+    RG    A DI
Sbjct: 208 --VNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDI 265

Query: 313 FRRMQ----GLGLKPDDFT---LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
           F  MQ    G GLKP+++T   L+    S AN G + L + + T ++K+    D ++G+A
Sbjct: 266 FSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLL-TRVEKSGFLHDLYVGSA 324

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           LV  +AK G I  A  +F+ M  R+V S   +I+GL    +  +A+++F EM    +E +
Sbjct: 325 LVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKD-SVELN 383

Query: 426 EVTFVGVLSACSHAGLVEEGCKH------FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             +++ +L+A     ++E G +       FL  S + N Q    +   +++++ + G I 
Sbjct: 384 PNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGN--GLINMYAKCGAIN 441

Query: 480 EALDLIKSMPLVPDAFVWGALL 501
           +A  + + M    D+  W +++
Sbjct: 442 DACVVFRLMD-NKDSVTWNSMI 462



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 143/297 (48%), Gaps = 30/297 (10%)

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           D+F+ N LI++Y + G++ S RKVFDEMP++N+VSW+ +I+G T      EA ++FR+M 
Sbjct: 107 DLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMV 166

Query: 318 GLGLKPDDFTLVCVLNSCANIG--WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC-G 374
             G  P+ +    V+ +C   G   L+ G  +H  + K     D    N L+ MY    G
Sbjct: 167 SDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALG 226

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV----GIEPDEVTFV 430
            +D A   F S+  R++ S  +MI      G A  A DIFS M +     G++P+E TF 
Sbjct: 227 MVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFG 286

Query: 431 GVLSA-CS--HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL---------FGRAGLI 478
            ++SA CS  ++GLV            +  L  + E  G + DL         F +AG I
Sbjct: 287 SLISATCSLANSGLV-----------LLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSI 335

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
             A ++ + M       + G ++G  +     E  E+ ME     E   +   I++T
Sbjct: 336 GYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILT 392


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/570 (35%), Positives = 324/570 (56%), Gaps = 15/570 (2%)

Query: 45  AFIIKTGSPQHQTQILYDKIISLSRGN-EIENL-----SLQNPQVYLYNFIIQCLSNANP 98
           AF++KTG       +    I   ++G  +I++       +Q+  +  +  +I   S    
Sbjct: 169 AFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGL 228

Query: 99  LE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           L+ A+ L+  +L+    P+ +TL  +L AC + +   +G+Q+H++ +++ L S+V+V  T
Sbjct: 229 LDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCT 288

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +YA    ++   K+F+   H     +++SWT LI  YV+     EAI  F +M   +
Sbjct: 289 LVDMYAKSAAVENSRKIFNTMLH----HNVMSWTALISGYVQSRQEQEAIKLFCNMLHGH 344

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           + P+      VL AC+ L D  +G ++H         LS    + N+LI+MY + G +  
Sbjct: 345 VTPNCFTFSSVLKACASLPDFGIGKQLHGQTIK--LGLSTINCVGNSLINMYARSGTMEC 402

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           ARK F+ +  KN++S+N+            E+ +      G+G  P  FT  C+L+  A 
Sbjct: 403 ARKAFNILFEKNLISYNTAADANAKALDSDESFNHEVEHTGVGASP--FTYACLLSGAAC 460

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           IG +  G+ +H  + K+   T+  I NAL+ MY+KCG  + A  VF  M  R+V ++T++
Sbjct: 461 IGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSI 520

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I G A HG A KAL++F EM ++G++P+EVT++ VLSACSH GL++E  KHF  M   ++
Sbjct: 521 ISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHS 580

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           + P+ EHY CMVDL GR+GL+ EA++ I SMP   DA VW   LG+C++H   +L E   
Sbjct: 581 ISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAA 640

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           + ++  EP     YIL++N+Y+S+ RW +   LRK MK++K+ K  G S +EV  + ++F
Sbjct: 641 KKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKF 700

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             GD SHP+  +IY  LDE+  + KN GYI
Sbjct: 701 HVGDTSHPQARKIYDELDELALKIKNLGYI 730



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 190/357 (53%), Gaps = 14/357 (3%)

Query: 92  CLSNANPLEAIALYREMLIKGL--LPNTYTLPYV-----LKACWQSQSLRVGQQVHAYSM 144
           CL ++  L+A  L  E L K +  L  T T P +     LKAC +S +L +G+ +H   +
Sbjct: 7   CLPSSIYLQAKDLKFESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLI 66

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
            + L  +  + N+L+ LY+ CG  +  + L  FR     +RDLVSW+ +I  +      +
Sbjct: 67  DSGLPLDSVLLNSLITLYSKCGDWE--NALSIFRNMGHHKRDLVSWSAIISCFANNSMES 124

Query: 205 EAILSFFDMCQAN---LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
            A+L+F  M Q +   + P+      +L +CS     + G+ I  ++    +     V +
Sbjct: 125 RALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGY-FDSHVCV 183

Query: 262 HNALIDMYLKCG-NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
             ALIDM+ K G +I SAR VFD+M  KN+V+W  MI   +  G   +A+D+F R+    
Sbjct: 184 GCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSE 243

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
             PD FTL  +L++C  + +  LGK +H+++ ++ + +D F+G  LVDMYAK   ++ + 
Sbjct: 244 YTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSR 303

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            +F +M   +V S+TA+I G     +  +A+ +F  M    + P+  TF  VL AC+
Sbjct: 304 KIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACA 360



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 40/214 (18%)

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--KC 388
           +L +C   G LELGK +H  L  + +  D  + N+L+ +Y+KCG  + A  +FR+M    
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG---IEPDEVTFVGVLSACSH------- 438
           RD+ S++A+I   A +    +AL  F  M Q     I P+E  F  +L +CS+       
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 439 --------------------AGLVEEGCKHFLDMSRVYNLQPQTEH-----YGCMVDLFG 473
                                 L++   K  LD+     +  + +H     +  M+  + 
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYS 224

Query: 474 RAGLIREALDLIKSMPL---VPDAFVWGALLGAC 504
           + GL+ +A+DL   + +    PD F   +LL AC
Sbjct: 225 QLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSAC 258


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 188/523 (35%), Positives = 307/523 (58%), Gaps = 50/523 (9%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC-------GLIKAVHKL 174
           + L+ C     L++   +HAY ++T ++ +V+  +   RL A C        LI    ++
Sbjct: 22  FSLETCSDLTHLKI---IHAYMIRTHIICDVFAAS---RLIAFCVDPSSGTSLIDYASRI 75

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F   Q+P    +L  +  +I+ +     P +A   +    +  L PD +    ++ +C+K
Sbjct: 76  FSQIQNP----NLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTK 131

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL------------------------ 270
           L  +S+G + H +I  + F    DV++ N+L+ MY                         
Sbjct: 132 LHCISMGSQAHGHIIKHGFE--KDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWT 189

Query: 271 -------KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
                  KCG++ SARK+FD+MP KN+V+W++MI+G      F +A+++F+ +Q  G++ 
Sbjct: 190 SMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRA 249

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           ++  +V V++SCA++G LELG+  H Y+ KN +  +  +G ALVDMYA+CG ID+A  VF
Sbjct: 250 NETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVF 309

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             +  RD  S+TA+I GLA+HG + ++L  F+ M + G+ P ++TF  VLSACSH GLVE
Sbjct: 310 EDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVE 369

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
            G + F  M R + ++P+ EHYGCMVDL GRAG + EA   +  MP+ P+A VWGALLGA
Sbjct: 370 RGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGA 429

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C+IH   E+ E V + L++  P+  G Y+L++NIY++   W++  ++R+ MK + +KK P
Sbjct: 430 CRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPP 489

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           G SL+E+ G  ++F  GD SHP+  +I ++ +EI+ + +  GY
Sbjct: 490 GHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGY 532



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 198/390 (50%), Gaps = 47/390 (12%)

Query: 31  LESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENLS------LQNPQ 82
           LE+   +  LK  HA++I+T           L    +  S G  + + +      +QNP 
Sbjct: 24  LETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPN 83

Query: 83  VYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           ++++N +I+  S + NP +A   Y +   +GLLP+  T P+++K+C +   + +G Q H 
Sbjct: 84  LFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHG 143

Query: 142 YSMKTALLSNVYVFNTLMRLYAV-------------------------------CGLIKA 170
           + +K     +VYV N+L+ +YA                                CG +++
Sbjct: 144 HIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVES 203

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
             KLF   Q P  +++LV+W+T+I  Y + ++  +A+  F  +    +R +  ++V V+S
Sbjct: 204 ARKLFD--QMP--EKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVIS 259

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           +C+ LG L LG + H Y+  N   L  ++ +  AL+DMY +CG+I  A  VF+++P ++ 
Sbjct: 260 SCAHLGALELGERAHDYVVKNGMTL--NLILGTALVDMYARCGSIDKAVWVFEDLPERDT 317

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           +SW ++IAGL   G  + +L  F  M   GL P D T   VL++C++ G +E G  +   
Sbjct: 318 LSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFES 377

Query: 351 LDKNH-INTDGFIGNALVDMYAKCGRIDQA 379
           + ++H +         +VD+  + G++++A
Sbjct: 378 MKRDHRVEPRLEHYGCMVDLLGRAGKLEEA 407


>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
          Length = 573

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 207/590 (35%), Positives = 325/590 (55%), Gaps = 65/590 (11%)

Query: 19  FQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQ------TQILYDKIISLSRGNE 72
           F +L LL+   R    K++  LKQ HA +I +G    +      ++     I  +    +
Sbjct: 3   FLKLRLLNSIHR---CKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFD 59

Query: 73  IENLSLQNPQVYLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
             N +  +     YN +I    S+  P  A  +Y  ++  G +P+ YT P VLKAC +  
Sbjct: 60  FLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFL 119

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
            ++ G+QVH  ++K   L ++YV N+L+  Y+VCG      ++F         RD+VSWT
Sbjct: 120 GVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFD----EMLVRDVVSWT 175

Query: 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
            LI  YV+     EAI  F  M   ++ P+    V VL AC ++G LS+G  +H  +   
Sbjct: 176 GLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKR 232

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
            F +   + + NAL+DMY+KC  +  ARK+FDE+P +++VSW S+I+GL    Q K++L+
Sbjct: 233 AFGIG--LVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLE 290

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           +F  MQ  G++PD   L  VL++CA++G L+ G+WV  Y+++  I  D  IG ALVDMYA
Sbjct: 291 LFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYA 350

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           KCG I+ A  +F  +  R+++++ A++ GLA+HG   +AL  F  M   GI P+EVTF+ 
Sbjct: 351 KCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLA 410

Query: 432 VLSACSHAGLVEEGCKHFLDM-SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
           +L+AC H+GLV EG  +F  M S+ +N  P+ EHYGCM+DL  RAGL+ EA         
Sbjct: 411 ILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAY-------- 462

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
                                                +G Y+L++NIY++  RW +  ++
Sbjct: 463 -------------------------------------NGVYVLLSNIYATNERWDDVTRV 485

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
           R+ MK++ ++K PG S++EV GE +EF  GD +H +  +I+ LL+ + +Q
Sbjct: 486 RRLMKDKGIRKFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHILLNILANQ 535


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/509 (39%), Positives = 299/509 (58%), Gaps = 9/509 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ L  +M  +G+ PN+ T+  VL    ++++L  G+ +H Y ++ +  + V V   L+
Sbjct: 193 DAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLL 252

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD--MCQAN 217
            +YA C  +    K+F         R+ VSW+ +I  YV  D   EA L  FD  + +  
Sbjct: 253 DMYAKCQCLLYARKIFDV----MGVRNEVSWSAMIGGYVXSDCMKEA-LELFDQMILKDA 307

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           + P  + L  VL AC+KL DLS G K+H YI         D+ + N L+ MY KCG I  
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK--LGXVLDILLGNTLLSMYAKCGVIDD 365

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A + FD M  K+ VS++++++G    G    AL IFR MQ  G+ PD  T++ VL +C++
Sbjct: 366 AIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSH 425

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +  L+ G   H YL      TD  I NAL+DMY+KCG+I  A  VF  M   D+ S+ AM
Sbjct: 426 LAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAM 485

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I+G  IHG   +AL +F ++  +G++PD++TF+ +LS+CSH+GLV EG   F  MSR ++
Sbjct: 486 IIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFS 545

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           + P+ EH  CMVD+ GRAGLI EA   I++MP  PD  +W ALL AC+IH  +EL E V 
Sbjct: 546 IVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVS 605

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           + +    PE  G ++L++NIYS+  RW +A  +R   K+  +KK PGCS +E+ G  + F
Sbjct: 606 KKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAF 665

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             GD+SH +  +I + L+E++ + K  GY
Sbjct: 666 VGGDQSHLQLSQINRKLEELLVEMKRLGY 694



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 159/492 (32%), Positives = 238/492 (48%), Gaps = 18/492 (3%)

Query: 25  LHQSPRLESSKSVGQLKQFHAFIIKTGSPQ-----HQTQILYDKIISLSRGNEIENLSLQ 79
           LH       SKS+ + K+ H   +K  S       H+   LY     +     + +  + 
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD-EIP 70

Query: 80  NPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           NP V L+N II+  +   P + AI LY  ML  G+ PN YT P+VLKAC    ++  G +
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +H+++    L S+V+V   L+  YA CG++    +LF    H    RD+V+W  +I    
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH----RDVVAWNAMIAGCS 186

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
                 +A+     M +  + P+   +V VL    +   L  G  +H Y     F+    
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFD--NG 244

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-Q 317
           V +   L+DMY KC  +  ARK+FD M V+N VSW++MI G       KEAL++F +M  
Sbjct: 245 VVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMIL 304

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              + P   TL  VL +CA +  L  G+ +H Y+ K     D  +GN L+ MYAKCG ID
Sbjct: 305 KDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVID 364

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F  M  +D  S++A++ G   +G A  AL IF  M   GI+PD  T +GVL ACS
Sbjct: 365 DAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACS 424

Query: 438 HAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           H   ++ G C H   + R +     T     ++D++ + G I  A ++   M    D   
Sbjct: 425 HLAALQHGFCSHGYLIVRGF--ATDTLICNALIDMYSKCGKISFAREVFNRMDR-HDIVS 481

Query: 497 WGALLGACKIHA 508
           W A++    IH 
Sbjct: 482 WNAMIIGYGIHG 493



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 207/431 (48%), Gaps = 31/431 (7%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           M ++  + N Y   ++L+AC QS+SL   +++H + +K    ++  V + L RLY  C  
Sbjct: 1   MPLRXEVKNNYL--HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQ 58

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           +    +LF    +P     ++ W  +I+AY        AI  +  M    +RP+      
Sbjct: 59  VVLARRLFDEIPNPS----VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPF 114

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL ACS L  +  G++IH +     F L  DVF+  AL+D Y KCG +  A+++F  M  
Sbjct: 115 VLKACSGLLAIEDGVEIHSHA--KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH 172

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           ++VV+WN+MIAG +  G   +A+ +  +MQ  G+ P+  T+V VL +      L  GK +
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKAL 232

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H Y  +   +    +G  L+DMYAKC  +  A  +F  M  R+  S++AMI G       
Sbjct: 233 HGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCM 292

Query: 408 WKALDIFSEMS-QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
            +AL++F +M  +  ++P  VT   VL AC+             D+SR   L       G
Sbjct: 293 KEALELFDQMILKDAMDPTPVTLGSVLRACA----------KLTDLSRGRKLHCYIIKLG 342

Query: 467 CMVD---------LFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC--KIHAKVELAEI 515
            ++D         ++ + G+I +A+     M    D+  + A++  C    +A V L+  
Sbjct: 343 XVLDILLGNTLLSMYAKCGVIDDAIRFFDXMN-PKDSVSFSAIVSGCVQNGNAAVALSIF 401

Query: 516 VMENLVRFEPE 526
            M  L   +P+
Sbjct: 402 RMMQLSGIDPD 412


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 188/496 (37%), Positives = 289/496 (58%), Gaps = 8/496 (1%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF-NTLMRLYAVCGLIKAV 171
           L+P+      +LK C +   +  G+ VHA+ + +  L N  V  N ++ +YA CG +   
Sbjct: 83  LVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDA 142

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
            ++F         +D+V+WT LI  + + + P +A+L F  M +  L+P+   L  +L A
Sbjct: 143 RRMFD----EMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKA 198

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
                 L  G ++H +     +  S  V++ +AL+DMY +CG++ +A+  FD MP K+ V
Sbjct: 199 SGSEHGLDPGTQLHAFCLKYGYQSS--VYVGSALVDMYARCGHMDAAQLAFDGMPTKSEV 256

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           SWN++I+G   +G+ + AL +  +MQ    +P  FT   V ++CA+IG LE GKWVH ++
Sbjct: 257 SWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHM 316

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            K+ +    FIGN L+DMYAK G ID A  VF  +   DV S+  M+ G A HG   + L
Sbjct: 317 IKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETL 376

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
           D F +M ++GIEP+E++F+ VL+ACSH+GL++EG  +F ++ + Y ++P   HY   VDL
Sbjct: 377 DRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYF-ELMKKYKVEPDVPHYVTFVDL 435

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
            GR GL+  A   I+ MP+ P A VWGALLGAC++H  +EL     E     +P   G  
Sbjct: 436 LGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPR 495

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           +L++NIY+S  RW++  K+RK MKE  VKK P CS VE+    + F   D++HP+  EI 
Sbjct: 496 MLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIR 555

Query: 592 KLLDEIMHQSKNHGYI 607
              +EI  + K  GY+
Sbjct: 556 GKWEEISGKIKEIGYV 571



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 167/310 (53%), Gaps = 9/310 (2%)

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           + +L PD  +   +L  C++LG +  G  +H ++ D+HF L   + + N +++MY KCG 
Sbjct: 80  RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHF-LDNHLVLQNIIVNMYAKCGC 138

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  AR++FDEMP K++V+W ++IAG +   + ++AL +F +M  LGL+P+ FTL  +L +
Sbjct: 139 LDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKA 198

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
             +   L+ G  +H +  K    +  ++G+ALVDMYA+CG +D A   F  M  +   S+
Sbjct: 199 SGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSW 258

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            A+I G A  G+   AL +  +M +   +P   T+  V SAC+  G +E+G      M +
Sbjct: 259 NALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIK 318

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
              L+        ++D++ +AG I +A  +   + + PD   W  +L  C  H       
Sbjct: 319 S-GLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQHG------ 370

Query: 515 IVMENLVRFE 524
           +  E L RFE
Sbjct: 371 LGKETLDRFE 380



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 154/306 (50%), Gaps = 6/306 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N  P +A+ L+ +ML  GL PN +TL  +LKA      L  G Q+HA+ +K    S+VYV
Sbjct: 167 NNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYV 226

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +YA CG + A    F         +  VSW  LI  + +      A+   + M 
Sbjct: 227 GSALVDMYARCGHMDAAQLAF----DGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQ 282

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           + N +P       V SAC+ +G L  G  +H ++  +   L    FI N L+DMY K G+
Sbjct: 283 RKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLI--AFIGNTLLDMYAKAGS 340

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I  A++VFD +   +VVSWN+M+ G    G  KE LD F +M  +G++P++ + +CVL +
Sbjct: 341 IDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTA 400

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           C++ G L+ G +    + K  +  D       VD+  + G +D+A    R M      + 
Sbjct: 401 CSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAV 460

Query: 395 TAMIVG 400
              ++G
Sbjct: 461 WGALLG 466


>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like isoform 1 [Cucumis sativus]
 gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like isoform 2 [Cucumis sativus]
          Length = 517

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/519 (37%), Positives = 311/519 (59%), Gaps = 16/519 (3%)

Query: 65  ISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYV 123
           IS+++  +I    L NP+ +++N ++  L N+  P   + LY +ML      N +T  Y 
Sbjct: 10  ISIAQFTQIHAKLLTNPKPHIFNPLLGSLVNSIFPENGLFLYNQMLRYPSSHNHFTFTYA 69

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           LKAC      + G ++HA+ +K+  LS++++ N+L+  Y + G + +   +F     P  
Sbjct: 70  LKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDP-- 127

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
             D+VSWT++I    K+ +  EA+  F  M   N+RP+   LV  LSACS L  L LG  
Sbjct: 128 --DVVSWTSIISGLSKLGFEKEALSKFLSM---NVRPNSTTLVTALSACSSLRCLKLGKA 182

Query: 244 IH--RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
           IH  R  T N  N    V + NAL+D Y++C  + SA  +F++MP ++VVSW +MI G  
Sbjct: 183 IHGLRMRTLNEEN----VILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYA 238

Query: 302 HRGQFKEALDIFRRMQGLGLK-PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTD 359
             G  +EA+ +F+ M  +G   P++ TLV VL++C++I  L LG+WVH+Y++  H +  D
Sbjct: 239 QSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIID 298

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
           G +GNAL++MY KCG ++ A  +F++++ +D+ S++ +I GLA++G   +A  +FS M  
Sbjct: 299 GNVGNALINMYVKCGNMEMAILIFKAIEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLV 358

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G+ PD++TF+G+LSACSH GL+ +G   F  M  VYN+ PQ  HY CMVD++G+AGL+ 
Sbjct: 359 HGVSPDDITFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLD 418

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA   IK MP+  +  VWGALL AC++H   +  E V E L+  +    G + L++N Y+
Sbjct: 419 EAEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLGSKGVTVGTFALLSNTYA 478

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
             +RW +A  +R  M+ R +KK  G S +E+    Y  R
Sbjct: 479 CCDRWNDANDVRVAMRSRGLKKMAGRSWIEMVDSTYPLR 517


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/529 (37%), Positives = 301/529 (56%), Gaps = 8/529 (1%)

Query: 80  NPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +  V  +N +I  L+ N    EA  ++ +M  +G +P++ T   +L     + +    ++
Sbjct: 297 DRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKE 356

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           VH ++++  L+S++ V +  + +Y  CG I     +F       A R++ +W  +I    
Sbjct: 357 VHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFD----KLAVRNVTTWNAMIGGVA 412

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +     EA+  F  M +    PD    V +LSA      L    ++H Y  D       D
Sbjct: 413 QQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL---VD 469

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           + + NAL+ MY KCGN   A++VFD+M  +NV +W  MI+GL   G   EA  +F +M  
Sbjct: 470 LRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLR 529

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G+ PD  T V +L++CA+ G LE  K VH++     + +D  +GNALV MYAKCG +D 
Sbjct: 530 EGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDD 589

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  VF  M  RDVYS+T MI GLA HG+   ALD+F +M   G +P+  +FV VLSACSH
Sbjct: 590 ARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSH 649

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           AGLV+EG + FL +++ Y ++P  EHY CMVDL GRAG + EA   I +MP+ P    WG
Sbjct: 650 AGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWG 709

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           ALLGAC  +  +E+AE   +  ++ +P+    Y+L++NIY++   W++ L +R  M+ R 
Sbjct: 710 ALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRG 769

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           ++K PG S +EV  + + F  GD SHP++ EIY  L +++ + K  GY+
Sbjct: 770 IRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYV 818



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 137/409 (33%), Positives = 212/409 (51%), Gaps = 16/409 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ +Y +M  +G  PN  T   +LKAC    SL+ G+++HA+ +++   S+V V   L+
Sbjct: 13  DAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALV 72

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y  CG I     +F        +R+++SWT +I          EA   F  M +    
Sbjct: 73  NMYVKCGSIDDAQLIF----DKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI 128

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+    V +L+A +  G L    ++H +  +    L+ D+ + NAL+ MY K G+I  AR
Sbjct: 129 PNSYTYVSILNANASAGALEWVKEVHSHAVNA--GLALDLRVGNALVHMYAKSGSIDDAR 186

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA--N 337
            VFD M  +++ SW  MI GL   G+ +EA  +F +M+  G  P+  T + +LN+ A  +
Sbjct: 187 VVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITS 246

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
            G LE  K VH +  K    +D  +GNAL+ MYAKCG ID A  VF  M  RDV S+ AM
Sbjct: 247 TGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAM 306

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL---VEEGCKHFLDMSR 454
           I GLA +G   +A  IF +M Q G  PD  T++ +L+     G    V+E  KH +++  
Sbjct: 307 IGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGL 366

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           V +L+  +      V ++ R G I +A  LI     V +   W A++G 
Sbjct: 367 VSDLRVGS----AFVHMYIRCGSIDDA-QLIFDKLAVRNVTTWNAMIGG 410



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 151/521 (28%), Positives = 246/521 (47%), Gaps = 47/521 (9%)

Query: 41  KQFHAFIIKTG---SPQHQTQI--LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           K+ HA II++G     + +T +  +Y K  S+     I +  ++   V  +  +I  L++
Sbjct: 50  KKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVER-NVISWTVMIGGLAH 108

Query: 96  -ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
                EA   + +M  +G +PN+YT   +L A   + +L   ++VH++++   L  ++ V
Sbjct: 109 YGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRV 168

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ +YA  G I     +F        +RD+ SWT +I    +     EA   F  M 
Sbjct: 169 GNALVHMYAKSGSIDDARVVFD----GMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQME 224

Query: 215 QANLRPDGMILVIVL--SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           +    P+    + +L  SA +  G L    ++H++     F    D+ + NALI MY KC
Sbjct: 225 RGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGF--ISDLRVGNALIHMYAKC 282

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G+I  AR VFD M  ++V+SWN+MI GL   G   EA  IF +MQ  G  PD  T + +L
Sbjct: 283 GSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLL 342

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           N+  + G  E  K VH +  +  + +D  +G+A V MY +CG ID A  +F  +  R+V 
Sbjct: 343 NTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVT 402

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA----------------C 436
           ++ AMI G+A      +AL +F +M + G  PD  TFV +LSA                 
Sbjct: 403 TWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYA 462

Query: 437 SHAGLVE-----------EGCKHFLDMSRVYN--LQPQTEHYGCMVDLFGRAGLIREALD 483
             AGLV+             C + +   +V++  ++     +  M+    + G   EA  
Sbjct: 463 IDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFS 522

Query: 484 LIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
           L   M    +VPDA  + ++L AC     +E  + V  + V
Sbjct: 523 LFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAV 563



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 190/374 (50%), Gaps = 21/374 (5%)

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           +I  Y +  Y  +A+  +  M +   +P+ +  + +L AC     L  G KIH +I  + 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           F    DV +  AL++MY+KCG+I  A+ +FD+M  +NV+SW  MI GL H G+ +EA   
Sbjct: 61  FQ--SDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHR 118

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F +MQ  G  P+ +T V +LN+ A+ G LE  K VH++     +  D  +GNALV MYAK
Sbjct: 119 FLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAK 178

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
            G ID A  VF  M  RD++S+T MI GLA HG+  +A  +F +M + G  P+  T++ +
Sbjct: 179 SGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSI 238

Query: 433 L--SACSHAGLVE---EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           L  SA +  G +E   E  KH      + +L+        ++ ++ + G I +A  +   
Sbjct: 239 LNASAITSTGALEWVKEVHKHAGKAGFISDLRVGN----ALIHMYAKCGSIDDARLVFDG 294

Query: 488 MPLVPDAFVWGALLG-----ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
           M    D   W A++G      C   A     ++  E  V   P+    Y+ + N + S  
Sbjct: 295 M-CDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFV---PDST-TYLSLLNTHVSTG 349

Query: 543 RWKEALKLRKKMKE 556
            W+   ++ K   E
Sbjct: 350 AWEWVKEVHKHAVE 363


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/524 (38%), Positives = 294/524 (56%), Gaps = 54/524 (10%)

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL--IKAVHKLFHFR 178
           P     C   Q L+   Q+HA  +KTA + +      L+R  AV     +    K+F   
Sbjct: 15  PSSFFPCKTMQDLK---QLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSM 71

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGD 237
             P    +  S+ TLI+A  + + P +A+L F +M +  ++ P+      V  AC +   
Sbjct: 72  HRP----NCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAER 127

Query: 238 LSLGIKIHRY--------------------------------------------ITDNHF 253
           L  G ++H                                              I D   
Sbjct: 128 LREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKR 187

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            +  DV + N +ID Y++ G +  AR +FDEMP ++VVSWN MIAG    G FKEA+++F
Sbjct: 188 RVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVF 247

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
           R MQ   + P+  TLV VL + + +G LELGKWVH Y  +N+I  D  +G+AL+DMYAKC
Sbjct: 248 REMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKC 307

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G I++A  VF  +  R+V +++ +I GLA+HG+A   LD F +M + G+ P +VT++G+L
Sbjct: 308 GSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLL 367

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SACSHAGLV EG   F  M RV  L+P+ EHYGCMVDL GRAGL+ E+ +LI +MP+ PD
Sbjct: 368 SACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPD 427

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
             +W ALLGACK+H  VE+ + V E+L+   P   G+Y+ ++NIY+S   W+   K+R  
Sbjct: 428 DVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLM 487

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           MKE  V+K PGCS +E+ G  +EF   D SHPK+ +I+ +L E+
Sbjct: 488 MKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEM 531



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 228/474 (48%), Gaps = 92/474 (19%)

Query: 35  KSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIEN---LSLQNPQVYLYNF 88
           K++  LKQ HA +IKT     P    ++L    +S  R  +       S+  P  + YN 
Sbjct: 22  KTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNT 81

Query: 89  IIQCLSNAN-PLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           +I+ LS +N P +A+ ++ EM+    + PN +T P V KAC +++ LR G+QVH  ++K 
Sbjct: 82  LIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKF 141

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFH------------------------------ 176
            L S+ +V + ++R+Y  CG+++  H+LF+                              
Sbjct: 142 GLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMID 201

Query: 177 --------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
                         F + P  QR +VSW  +I  Y +  +  EA+  F +M  A + P+ 
Sbjct: 202 GYVRIGELEVARNLFDEMP--QRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNY 259

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
           + LV VL A S+LG L LG  +H Y   N  N+  D  + +ALIDMY KCG+I  A +VF
Sbjct: 260 VTLVSVLPAMSRLGALELGKWVHLYAVRN--NIGVDDVLGSALIDMYAKCGSIEKALQVF 317

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
           + +P +NVV+W+++IAGL   G+ K+ LD F  M+  G+ P D T + +L++C++ G + 
Sbjct: 318 EGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVN 377

Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
            G+W   +               +V +     RI+                Y  M+  L 
Sbjct: 378 EGRWFFDH---------------MVRVSGLEPRIEH---------------YGCMVDLL- 406

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG---CKHFLDMS 453
             G+A    +    +  + I+PD+V +  +L AC   G VE G    +H ++++
Sbjct: 407 --GRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELA 458


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 167/384 (43%), Positives = 261/384 (67%), Gaps = 2/384 (0%)

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
           NLRPD + +V ++ AC++LG+L  G  +H Y       L  ++ ++NA++DMY KC +I 
Sbjct: 6   NLRPDEVTMVSLVPACAQLGNLERGKLLHSY--SKELGLDENLSVNNAILDMYCKCDDIE 63

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
           SA++VF+ +  K+V+SW SM++GL   G F+E+L +FR+MQ   ++PD+ TLV VL++CA
Sbjct: 64  SAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACA 123

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
             G L+ GK++H  +DK  IN D  +  ALVDMYAKCG ID A  VFR M+ R+V+++ A
Sbjct: 124 QTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNA 183

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           MI GLA+HG    A+ +F +M    + PD+VTF+ +L ACSHAGLV+EG   F  M   +
Sbjct: 184 MIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKF 243

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            ++P+ EHYGC+VDL  RA  + +AL  I++MP+  ++ +W  LLGAC+     +LAE +
Sbjct: 244 QIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKI 303

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
              ++  EP+  G Y++++N+Y+  ++W  ALKLRK+MK + ++KTPGCS +E+ G  ++
Sbjct: 304 XRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQ 363

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQ 600
           F  GD+SH +T +IY +++E+  +
Sbjct: 364 FVAGDRSHLQTEQIYAMIEEMTRR 387



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 172/320 (53%), Gaps = 14/320 (4%)

Query: 110 IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK 169
           +  L P+  T+  ++ AC Q  +L  G+ +H+YS +  L  N+ V N ++ +Y  C  I+
Sbjct: 4   LDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIE 63

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
           +  ++F+  +    ++D++SWT+++    K  Y  E++  F  M    + PD + LV VL
Sbjct: 64  SAQEVFNRIR----EKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVL 119

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           SAC++ G L  G  IH  I  + F ++ D+ +  AL+DMY KCG+I  A +VF  M V+N
Sbjct: 120 SACAQTGALDQGKYIHLLI--DKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRN 177

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           V +WN+MI GL   G  ++A+ +F +M+   L PDD T + +L +C++ G ++ G  +  
Sbjct: 178 VFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQ 237

Query: 350 YLDKNHINTDGFIGN--ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
            + KN    +  + +   +VD+  +  ++D A     +M  +      A ++G    G  
Sbjct: 238 AM-KNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGH 296

Query: 408 WKALDIFSEMSQ--VGIEPD 425
           +   D+  ++ +  + +EPD
Sbjct: 297 F---DLAEKIXRRVIELEPD 313



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 35/288 (12%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E++AL+R+M +  + P+  TL  VL AC Q+ +L  G+ +H    K  +  ++ +   L+
Sbjct: 95  ESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALV 154

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I    ++F   +     R++ +W  +I       +  +AI  F  M    L 
Sbjct: 155 DMYAKCGSIDLALQVFRRMR----VRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLM 210

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  + +L ACS  G +  G+ + + +  N F + P +  +  ++D+  +   +  A 
Sbjct: 211 PDDVTFIALLCACSHAGLVDEGLAMFQAMK-NKFQIEPRMEHYGCVVDLLCRARKVDDAL 269

Query: 280 KVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS---- 334
              + MP+K N V W +++      G F  A  I RR+  + L+PD      +L++    
Sbjct: 270 AFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRV--IELEPDSCGRYVMLSNLYAG 327

Query: 335 ---------------------CANIGWLELGKWVHTYL--DKNHINTD 359
                                     W+EL   +H ++  D++H+ T+
Sbjct: 328 VSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTE 375


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 314/558 (56%), Gaps = 40/558 (7%)

Query: 30  RLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSR-------GNEIENLS----- 77
           +LE+ +S+ +L Q H  +IK+         +   +I LSR         E  NLS     
Sbjct: 12  QLENCRSLVELNQLHGLMIKSS--------VIRNVIPLSRLIDFCTTCPETMNLSYARSV 63

Query: 78  ---LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133
              +  P VY++N +I+  SN+ NP +A+  Y+EML KG  P+ +T PYVLKAC   + +
Sbjct: 64  FESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDI 123

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
           + G  VH + +KT    N+YV   L+ +Y  CG +   + L  F   PQ   ++V+W +L
Sbjct: 124 QFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVN--YGLRVFEDIPQW--NVVAWGSL 179

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I  +V  +  ++AI +F +M    ++ +  I+V +L AC +  D     K+        F
Sbjct: 180 ISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCFDPYFQSKVG-------F 232

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
           N    V +  +LIDMY KCG++ +AR +FD MP + +VSWNS+I G +  G  +EAL +F
Sbjct: 233 N----VILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMF 288

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             M  LG+ PD  T + V+ +    G  +LG+ +H Y+ K     D  I  ALV+MYAK 
Sbjct: 289 LDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKT 348

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGV 432
           G  + A   F  ++ +D  ++T +I+GLA HG   +AL IF  M + G   PD +T++GV
Sbjct: 349 GDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGV 408

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           L ACSH GLVEEG ++F +M  ++ L+P  EHYGCMVD+  RAG   EA  L+K+MP+ P
Sbjct: 409 LYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKP 468

Query: 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552
           +  +WGALL  C IH  +EL + +   +   E  G G Y+L++NIY+   RW +   +R+
Sbjct: 469 NVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRE 528

Query: 553 KMKERKVKKTPGCSLVEV 570
            MK ++V K  G S VE 
Sbjct: 529 SMKSKRVDKVLGHSSVET 546


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 193/487 (39%), Positives = 284/487 (58%), Gaps = 9/487 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK C     L  G+ +HA  + +    ++ + NTL+ LYA CG +    KLF       
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFD----EM 76

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG--DLSL 240
           + RD+V+WT LI  Y + D P +A+L   +M +  L+P+   L  +L A S +G  D+  
Sbjct: 77  SSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQ 136

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G ++H       +    +V++  A++DMY +C ++  A+ +FD M  KN VSWN++IAG 
Sbjct: 137 GRQLHGLCL--RYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGY 194

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
             +GQ  +A  +F  M    +KP  FT   VL +CA++G LE GKWVH  + K       
Sbjct: 195 ARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVA 254

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
           F+GN L+DMYAK G I+ A  VF  +  RDV S+ +M+ G + HG    AL  F EM + 
Sbjct: 255 FVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRT 314

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
            I P+++TF+ VL+ACSHAGL++EG +H+ DM + YN++PQ  HY  MVDL GRAG +  
Sbjct: 315 RIAPNDITFLCVLTACSHAGLLDEG-RHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDR 373

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540
           A+  I  MP+ P A VWGALLGAC++H  +EL     E +   +    G ++L+ NIY+ 
Sbjct: 374 AIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYAL 433

Query: 541 KNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
             RW +A K+RK MKE  VKK P CS VE+  E + F   D +HP+  EI+ + ++I  +
Sbjct: 434 AGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDK 493

Query: 601 SKNHGYI 607
            K  GY+
Sbjct: 494 IKEIGYV 500



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 150/305 (49%), Gaps = 8/305 (2%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV--GQQVHAYSMKTALLSNVYVF 155
           P +A+ L  EML  GL PN +TL  +LKA     S  V  G+Q+H   ++    SNVYV 
Sbjct: 97  PQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVS 156

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
             ++ +YA C  ++    +F         ++ VSW  LI  Y +     +A   F +M +
Sbjct: 157 CAILDMYARCHHLEEAQLIFDV----MVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLR 212

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
            N++P       VL AC+ +G L  G  +H  +      L    F+ N L+DMY K G+I
Sbjct: 213 ENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLV--AFVGNTLLDMYAKSGSI 270

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A+KVFD +  ++VVSWNSM+ G +  G  K AL  F  M    + P+D T +CVL +C
Sbjct: 271 EDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTAC 330

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           ++ G L+ G+     + K ++         +VD+  + G +D+A      M  +   +  
Sbjct: 331 SHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVW 390

Query: 396 AMIVG 400
             ++G
Sbjct: 391 GALLG 395


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/520 (37%), Positives = 303/520 (58%), Gaps = 43/520 (8%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYV---FNTLMRLYAVCGLIKAVHKLFHFRQ 179
           +L +C    +L+  +Q+HA  +   +L+N +    F   + L+    L  A +KL +   
Sbjct: 15  LLNSC---TTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYA-NKLLNHNN 70

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN---LRPDGMILVIVLSACSKLG 236
           +P     L +  ++I+AY K   P+++   + ++  +N   L PD      ++  C++L 
Sbjct: 71  NPT----LFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQ 126

Query: 237 DLSLGIKIHRYITDNHFNL-----------------------------SPDVFIHNALID 267
               G+ +H  +  + F L                              PD+    A+++
Sbjct: 127 AHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLN 186

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
              KCG+I  ARK+FDEMP ++ V+WN+MIAG    G+ +EALD+F  MQ  G+K ++ +
Sbjct: 187 ACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVS 246

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           +V VL++C ++  L+ G+WVH Y+++  +     +G ALVDMYAKCG +D+A  VF  MK
Sbjct: 247 MVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMK 306

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            R+VY++++ I GLA++G   ++LD+F++M + G++P+ +TF+ VL  CS  GLVEEG K
Sbjct: 307 ERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRK 366

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           HF  M  VY + PQ EHYG MVD++GRAG ++EAL+ I SMP+ P    W ALL AC+++
Sbjct: 367 HFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMY 426

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
              EL EI    +V  E + DGAY+L++NIY+    W+    LR+ MK + VKK PGCS+
Sbjct: 427 KNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSV 486

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +EV GE +EF  GDKSHP+  EI   L+EI    +  GY+
Sbjct: 487 IEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYV 526



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 193/413 (46%), Gaps = 53/413 (12%)

Query: 31  LESSKSVGQLKQFHAFIIKTG---SPQHQTQ----ILYDKIISLSRGNEIENLSLQNPQV 83
           L S  ++ ++KQ HA ++  G   +P    Q    I      +L   N++ N +  NP +
Sbjct: 16  LNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHN-NNPTL 74

Query: 84  YLYNFIIQCLS-NANPLEAIALYREML---IKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           +  N +I+  S ++ P ++   Y  +L      L P+ YT  ++++ C Q Q+   G  V
Sbjct: 75  FTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCV 134

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ----------------- 182
           H   +K     + +V   L+ +YA  G + + H +F     P                  
Sbjct: 135 HGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDI 194

Query: 183 ----------AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
                      +RD V+W  +I  Y +     EA+  F  M    ++ + + +V+VLSAC
Sbjct: 195 DFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSAC 254

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           + L  L  G  +H Y+    + +   V +  AL+DMY KCGN+  A +VF  M  +NV +
Sbjct: 255 THLQVLDHGRWVHAYV--ERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYT 312

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W+S I GL   G  +E+LD+F  M+  G++P+  T + VL  C+ +G +E G+    + D
Sbjct: 313 WSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGR---KHFD 369

Query: 353 KNHINTDGFIGNAL------VDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMI 398
               N  G IG  L      VDMY + GR+ +A     SM  R  V +++A++
Sbjct: 370 SMR-NVYG-IGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALL 420


>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 318/559 (56%), Gaps = 55/559 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQ 82
           LE  K++ +LK+ H  +I T   Q    I   +++     ++  NL+        +  P 
Sbjct: 12  LEKCKTMAELKRLHGLMITTSVIQDV--IPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPS 69

Query: 83  VYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           +Y++N +I+  S + +P EA+ +YREM  KG  P+ +T P+VLKAC       +GQ VH 
Sbjct: 70  LYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHN 129

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             +KT    +VY    L+++YA CG ++A  K+F        + ++V+WT+LI   +  D
Sbjct: 130 CIVKTGFEVDVYAATALLQMYAACGDMEAALKVFD----DIPKWNVVAWTSLIAGCISND 185

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR---------YITDNH 252
            P+EA+  + DM   ++ P+ + +V VL AC++  DL+ G  +H          + ++++
Sbjct: 186 CPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSN 245

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           FN    V +  A++DMY KC                               GQ  EALD+
Sbjct: 246 FN----VILATAIVDMYAKCA--------------------------YNQYGQANEALDL 275

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F  M+  G  PD  T +CV+ +CA++G L  G+ +H Y+ K ++  D  IG ALVDMYAK
Sbjct: 276 FSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAK 335

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ-VGIEPDEVTFVG 431
            G  ++A  VF  ++ +DV ++T++I+GLA+HG   +AL  F +M +   + PDE+T++G
Sbjct: 336 SGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIG 395

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           VLSACSH G VE+G  HF+ M  V+ ++P T+HYGCMVDL  RAG + EA  L++ MP+ 
Sbjct: 396 VLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVE 455

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P+  +W ALL  CKI+  +++A+ V   +   E +G G Y+L++NIY+   RW+E    R
Sbjct: 456 PNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMAR 515

Query: 552 KKMKERKVKKTPGCSLVEV 570
           + MKERK++K+ G S VE+
Sbjct: 516 ELMKERKIQKSLGHSSVEM 534


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 202/585 (34%), Positives = 327/585 (55%), Gaps = 24/585 (4%)

Query: 39  QLKQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQC 92
           + +  H  I+KTG  +    +     +Y K   +   +++ +NL  +N   +    +   
Sbjct: 82  EARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWT-TLLTGY 140

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N++PL A+ L+ +ML  G  P+ YTL  VL AC   QS+  G+QVHAY +K  +  + 
Sbjct: 141 VQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDT 200

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            + N+L   Y+    ++   K F   +    ++D++SWT++I +         ++  F D
Sbjct: 201 SIGNSLSSFYSKFRRLEFAIKAFKIIK----EKDVISWTSVISSCCDNGQAARSLSFFMD 256

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M    ++P+   L  VLSAC  +  L LG +IH       +  S  + I N+++ +YLKC
Sbjct: 257 MLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSS--ILIKNSIMYLYLKC 314

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE-----------ALDIFRRMQGLGL 321
           G +  A+K+F+ M   N+V+WN+MIAG        E           AL +F+++   G+
Sbjct: 315 GWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGM 374

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           KPD FT   VL+ C+N+  LE G+ +H  + K+ +  D  +G ALV MY KCG ID+A  
Sbjct: 375 KPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASK 434

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
            F  M  R + S+T+MI G A HG + +AL +F +M  VGI+P++VTFVGVLSACSHAGL
Sbjct: 435 AFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGL 494

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
            +E   +F  M + YN++P  +H+ C++D++ R G + EA D++  M   P+  +W  L+
Sbjct: 495 ADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLI 554

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
             C+ H K +L     E L++ +P+    Y+ + N++ S  RWK+  K+RK MKE KV K
Sbjct: 555 AGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGK 614

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
               S + +  + Y F+  DKSH ++LE+YKLL+ ++++ K  GY
Sbjct: 615 LKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGY 659



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 229/489 (46%), Gaps = 57/489 (11%)

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
           + ++Y  P +L+ C         + +H + +KT    +++V   L+ +Y+ CG++++ HK
Sbjct: 62  IESSYYFP-LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHK 120

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
           +F        +R++ +WTTL+  YV+  +P  A+  F  M +A   P    L IVL+ACS
Sbjct: 121 VF----DNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACS 176

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
            L  +  G ++H Y+   H +   D  I N+L   Y K   +  A K F  +  K+V+SW
Sbjct: 177 SLQSIEFGKQVHAYLIKYHIDF--DTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISW 234

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
            S+I+     GQ   +L  F  M   G+KP+++TL  VL++C  +  L+LG  +H+   K
Sbjct: 235 TSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIK 294

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG-----------LA 402
               +   I N+++ +Y KCG + +A  +F  M+  ++ ++ AMI G           +A
Sbjct: 295 LGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVA 354

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG----------------- 445
            H     AL +F ++ + G++PD  TF  VLS CS+   +E+G                 
Sbjct: 355 AHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVV 414

Query: 446 -----------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMPLV- 491
                      C      S+ +   P      +  M+  F R GL ++AL L + M LV 
Sbjct: 415 VGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVG 474

Query: 492 --PDAFVWGALLGACKIHAKVELAEI----VMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
             P+   +  +L AC  HA +    +    +M+     +P  D  +  + ++Y    R +
Sbjct: 475 IKPNQVTFVGVLSACS-HAGLADEALYYFELMQKQYNIKPVMD-HFACLIDMYLRLGRVE 532

Query: 546 EALKLRKKM 554
           EA  +  KM
Sbjct: 533 EAFDVVHKM 541



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%)

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
           LG + +      +L  C +       + +H ++ K   + D F+   LV++Y+KCG ++ 
Sbjct: 58  LGTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMES 117

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  VF ++  R+V ++T ++ G   +     AL +F +M + G  P   T   VL+ACS 
Sbjct: 118 AHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSS 177

Query: 439 AGLVEEG 445
              +E G
Sbjct: 178 LQSIEFG 184


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/578 (34%), Positives = 313/578 (54%), Gaps = 13/578 (2%)

Query: 34  SKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENL--SLQNPQVYLYNFI 89
           S +   L+  HA  + +G  +       L     +LSRGN+   +  ++ +P   L+N +
Sbjct: 136 SAASAALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTL 195

Query: 90  IQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           +  LS +  LEA    R      + P++ TL  VL A  +  +  +G+ VHA+  K  L 
Sbjct: 196 LAGLSGSEALEAFV--RMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLA 253

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
            + +V   L+ LYA CG ++    LF   + P    DLV++  LI  Y        ++  
Sbjct: 254 QHEHVVTGLISLYAKCGDMECARHLFDRMEGP----DLVTYNALISGYSINGMVGSSVEL 309

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F ++    LRP    LV ++   S  G   L   +H ++      L  +  +  AL  +Y
Sbjct: 310 FKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKA--GLDANAPVSTALTTLY 367

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            +  ++ SAR+ FD MP K + SWN+MI+G    G  + A+ +F++MQ L ++P+  T+ 
Sbjct: 368 CRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTIS 427

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
             L++CA +G L LGKWVH  +    +  + ++  AL+DMY KCG I +A  +F SM  +
Sbjct: 428 SALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNK 487

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           +V S+  MI G  +HG+  +AL ++ +M    + P   TF+ VL ACSH GLV+EG   F
Sbjct: 488 NVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVF 547

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP-LVPDAFVWGALLGACKIHA 508
             M+  Y + P  EH  CMVDL GRAG ++EA +LI   P       +WGALLGAC +H 
Sbjct: 548 RSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHK 607

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
             +LA++  + L   EPE  G Y+L++N+Y+SK ++ EA  +R++ K RK+ KTPGC+L+
Sbjct: 608 DGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLI 667

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           E+    + F  GD++HP++  IY  L+++  +    GY
Sbjct: 668 EIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGY 705


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 189/538 (35%), Positives = 311/538 (57%), Gaps = 12/538 (2%)

Query: 74   ENLSLQNPQVYL--YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACW-- 128
            E   + +P++ L  +N +I   +  N  +EAI  +R++L  GL P+ +TL  VL+AC   
Sbjct: 949  EKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG 1008

Query: 129  -QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDL 187
             + +   +G QVH Y++K  ++++ +V   L+ LY+  G +     L H +       DL
Sbjct: 1009 DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKY----DFDL 1064

Query: 188  VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
             SW  ++  Y+K +   +A+  F  M +  +  D + L   + A   L +L  G +I  Y
Sbjct: 1065 ASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAY 1124

Query: 248  ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
                 FN   D+++ + ++DMY+KCG++P+A ++F E+   + V+W +MI+G    G   
Sbjct: 1125 AIKLGFN--NDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDED 1182

Query: 308  EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
             AL ++  M+  G++PD++T   ++ + + +  LE GK +H  + K   + D F+G +LV
Sbjct: 1183 HALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLV 1242

Query: 368  DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
            DMY KCG +  A+ VFR M  R V  + AM++GLA HG   +AL++F  M   GI+PD+V
Sbjct: 1243 DMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKV 1302

Query: 428  TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
            TF+GVLSACSH+GL  E  K+F  M + Y + P+ EHY C+VD  GRAG I+EA ++I S
Sbjct: 1303 TFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIAS 1362

Query: 488  MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
            MP    A ++ ALLGAC+     E A+ V + L+  +P    AY+L++NIY++  +W + 
Sbjct: 1363 MPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDV 1422

Query: 548  LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
               R  MK + VKK PG S ++V  + + F   D+SHP+   IY+ ++++M + +  G
Sbjct: 1423 TDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEG 1480



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/442 (28%), Positives = 220/442 (49%), Gaps = 18/442 (4%)

Query: 79   QNPQVYLYNF-IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
            Q   ++ +N  + + L     + AI  ++ +L   +  ++ TL  +L A   +  L +G+
Sbjct: 855  QGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGE 914

Query: 138  QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            Q+HA  +K++    V V N+LM +Y+  G++ A  K   F   P+   DL+SW T+I +Y
Sbjct: 915  QIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKT--FINSPEL--DLISWNTMISSY 970

Query: 198  VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD----LSLGIKIHRYITDNHF 253
             + +   EAI +F D+ +  L+PD   L  VL ACS  GD     +LG ++H Y      
Sbjct: 971  AQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACST-GDEGEYFTLGSQVHVYAI--KC 1027

Query: 254  NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
             +  D F+  ALID+Y K G +  A  +       ++ SWN+++ G     + ++AL+ F
Sbjct: 1028 GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 314  RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
              M  +G+  D+ TL   + +   +  L+ GK +  Y  K   N D ++ + ++DMY KC
Sbjct: 1088 SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKC 1147

Query: 374  GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
            G +  A  +F  +   D  ++T MI G   +G    AL ++  M   G++PDE TF  ++
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207

Query: 434  SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY--GCMVDLFGRAGLIREALDLIKSMPLV 491
             A S    +E+G +     + V  L    +H+    +VD++ + G +++A  + + M + 
Sbjct: 1208 KASSCLTALEQGKQIH---ANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR 1264

Query: 492  PDAFVWGALLGACKIHAKVELA 513
               F W A+L     H  V+ A
Sbjct: 1265 KVVF-WNAMLLGLAQHGHVDEA 1285



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 166/341 (48%), Gaps = 29/341 (8%)

Query: 173  KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
            K+F F Q      ++ +W   +  ++       AI  F  + ++ +  D + LVI+LSA 
Sbjct: 849  KMFPFDQGS----NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 233  SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
                DL LG +IH  +  + F  +P V + N+L++MY K G + +A K F   P  +++S
Sbjct: 905  VGADDLDLGEQIHALVIKSSF--APVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLIS 962

Query: 293  WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG---WLELGKWVHT 349
            WN+MI+         EA+  FR +   GLKPD FTL  VL +C+      +  LG  VH 
Sbjct: 963  WNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHV 1022

Query: 350  YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
            Y  K  I  D F+  AL+D+Y+K G++D+A  +       D+ S+ A++ G     K+ K
Sbjct: 1023 YAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRK 1082

Query: 410  ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG--- 466
            AL+ FS M ++GI  DE+T    + A         GC   +++ +   +Q      G   
Sbjct: 1083 ALEHFSLMHEMGIPIDEITLATAIKAS--------GC--LINLKQGKQIQAYAIKLGFNN 1132

Query: 467  ------CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
                   ++D++ + G +  AL+L   +   PD   W  ++
Sbjct: 1133 DLWVSSGVLDMYIKCGDMPNALELFGEISR-PDEVAWTTMI 1172



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 109/465 (23%), Positives = 190/465 (40%), Gaps = 67/465 (14%)

Query: 41   KQFHAFIIKTGS-PQ----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCL-- 93
            K+ HA I+ +G  P     +    +Y K  SL    ++ + S  +  +  +N I+     
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKS-SDRDLVTWNSILAAYAQ 689

Query: 94   ----SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
                S  N LE   L+  +   G      TL  +LK C  S  ++V + VH Y++K    
Sbjct: 690  FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFE 749

Query: 150  SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
             +++V   L+ +Y   GL+     LF        +RD V W  +++AYV+  +  EA+  
Sbjct: 750  LDLFVSGALVNIYCKYGLVGQARLLFD----KMPERDAVLWNVMLKAYVENSFQDEALRF 805

Query: 210  FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
            F    ++   PD   L  V+   +                    ++S +   H   +  Y
Sbjct: 806  FSAFHRSGFXPDFSNLHCVIGGVNS-------------------DVSNNRKRHAEQVKAY 846

Query: 270  LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
                    A K+F      N+ +WN  +    H GQ   A+D F+ +    +  D  TLV
Sbjct: 847  --------AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLV 898

Query: 330  CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
             +L++      L+LG+ +H  + K+       + N+L++MY+K G +  A   F +    
Sbjct: 899  IILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPEL 958

Query: 390  DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
            D+ S+  MI   A +    +A+  F ++ + G++PD+ T   VL ACS            
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---------- 1008

Query: 450  LDMSRVYNLQPQTEHYG-------------CMVDLFGRAGLIREA 481
             D    + L  Q   Y               ++DL+ + G + EA
Sbjct: 1009 -DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 170/394 (43%), Gaps = 37/394 (9%)

Query: 133  LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
            L++G++ HA  + +  L + Y+ N L+ +Y+ CG + +  ++F       + RDLV+W +
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFD----KSSDRDLVTWNS 682

Query: 193  LIQAYVKM-DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL-----GDLSLGIKIHR 246
            ++ AY +  D   E +L  F +    LR  G  +  +  A         G + +   +H 
Sbjct: 683  ILAAYAQFADSSYENVLEGFRLFGL-LREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG 741

Query: 247  YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
            Y     F L  D+F+  AL+++Y K G +  AR +FD+MP ++ V WN M+         
Sbjct: 742  YAVKIGFEL--DLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQ 799

Query: 307  KEALDIFRRMQGLGLKPDDFTLVCVL---NSCANIGWLELGKWVHTYLDKNHINTDG--- 360
             EAL  F      G  PD   L CV+   NS  +       + V  Y  K      G   
Sbjct: 800  DEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNI 859

Query: 361  FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            F  N  +  +   G+I  A   F+++    +   +  +V +         LD+  ++  +
Sbjct: 860  FAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHAL 919

Query: 421  GIEPDEVTFVGV----LSACSHAGLVEEGCKHFLDMSRVYNLQPQTE--HYGCMVDLFGR 474
             I+      V V    ++  S AG+V    K F++        P+ +   +  M+  + +
Sbjct: 920  VIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFIN-------SPELDLISWNTMISSYAQ 972

Query: 475  AGLIREAL----DLIKSMPLVPDAFVWGALLGAC 504
              L  EA+    DL++   L PD F   ++L AC
Sbjct: 973  NNLEMEAICTFRDLLRD-GLKPDQFTLASVLRAC 1005


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 199/574 (34%), Positives = 319/574 (55%), Gaps = 14/574 (2%)

Query: 41   KQFHAFIIKTGSPQHQTQ-----ILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
            KQ H  ++++G  Q  +       +Y K  S+SR   +     +   V     I  C  +
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALS 985

Query: 96   ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ-SQSLRVGQQVHAYSMKTALLSNVYV 154
                 ++ ++ ++L  GLLP+ +T+  VL+AC        +  Q+HA +MK  ++ + +V
Sbjct: 986  GLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFV 1045

Query: 155  FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY-VKMDYPTEAILSFFDM 213
              TL+ +Y+  G ++    LF      Q   DL SW  ++  Y V  D+P +A+  +  M
Sbjct: 1046 STTLIDVYSKSGKMEEAEFLFV----NQDGFDLASWNAMMHGYIVSGDFP-KALRLYILM 1100

Query: 214  CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
             ++  R + + L     A   L  L  G +I   +    FNL  D+F+ + ++DMYLKCG
Sbjct: 1101 QESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNL--DLFVISGVLDMYLKCG 1158

Query: 274  NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
             + SAR++F+E+P  + V+W +MI+G    GQ + AL  +  M+   ++PD++T   ++ 
Sbjct: 1159 EMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVK 1218

Query: 334  SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
            +C+ +  LE G+ +H    K +   D F+  +LVDMYAKCG I+ A G+F+      + S
Sbjct: 1219 ACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIAS 1278

Query: 394  YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
            + AMIVGLA HG A +AL  F EM   G+ PD VTF+GVLSACSH+GLV E  ++F  M 
Sbjct: 1279 WNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQ 1338

Query: 454  RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
            ++Y ++P+ EHY C+VD   RAG IREA  +I SMP    A ++  LL AC++    E  
Sbjct: 1339 KIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETG 1398

Query: 514  EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
            + V E L+  EP    AY+L++N+Y++ N+W+     R  M++  VKK PG S V++  +
Sbjct: 1399 KRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNK 1458

Query: 574  FYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             + F  GD+SH +T  IY  ++ IM + +  GY+
Sbjct: 1459 VHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYL 1492



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 182/409 (44%), Gaps = 42/409 (10%)

Query: 41   KQFHAFIIKTGSPQHQTQIL-------YDKIISLSRGNEIENLSLQNPQ-VYLYNFIIQC 92
            K+ HA I+ +G   H  + L       Y K  SLS   ++ + +    + +  +N I+  
Sbjct: 646  KRAHARILTSG--HHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSA 703

Query: 93   LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
             ++    +   L+R +    +    +TL  V K C  S S    + +H Y++K  L  +V
Sbjct: 704  HAD-KARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDV 762

Query: 153  YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            +V   L+ +YA  G I+    LF         RD+V W  +++AYV      EA+L F +
Sbjct: 763  FVAGALVNIYAKFGRIREARVLFD----GMGLRDVVLWNVMMKAYVDTGLEYEALLLFSE 818

Query: 213  MCQANLRPDGMILVIVLSAC-SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
              +  LRPD + L  +     SK   L   +K  +      F              MY  
Sbjct: 819  FNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLF--------------MYDD 864

Query: 272  CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
                        +    +V++WN  ++    RG+  EA+D F  M    +  D  T V +
Sbjct: 865  ------------DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVM 912

Query: 332  LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
            L+  A +  LELGK +H  + ++ ++    +GN L++MY K G + +A  VF  M   D+
Sbjct: 913  LSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDL 972

Query: 392  YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
             S+  MI G A+ G    ++ +F ++ + G+ PD+ T   VL ACS  G
Sbjct: 973  VSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLG 1021



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 169/403 (41%), Gaps = 37/403 (9%)

Query: 123  VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
            +L+    +  L +G++ HA  + +    + ++ N L+ +Y+ CG + +  KLF     P 
Sbjct: 632  ILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFD--TTPD 689

Query: 183  AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
              RDLV+W  ++ A+   D   +    F  + ++ +      L  V   C      S   
Sbjct: 690  TSRDLVTWNAILSAHA--DKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAE 747

Query: 243  KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
             +H Y       L  DVF+  AL+++Y K G I  AR +FD M +++VV WN M+     
Sbjct: 748  SLHGYAV--KIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVD 805

Query: 303  RGQFKEALDIFRRMQGLGLKPDDFTLVC---VLNSCANIGWLELGKWVHTYLDKNHINTD 359
             G   EAL +F      GL+PDD TL     V+ S  N+   +L K +  Y  K  +  D
Sbjct: 806  TGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQL-KQLKAYGTKLFMYDD 864

Query: 360  GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
               G+                         DV ++   +      G+ W+A+D F +M  
Sbjct: 865  DDDGS-------------------------DVIAWNKTLSWFLQRGETWEAVDCFVDMIN 899

Query: 420  VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
              +  D +TFV +LS  +    +E G K    +     L        C+++++ + G + 
Sbjct: 900  SRVACDGLTFVVMLSVVAGLNCLELG-KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVS 958

Query: 480  EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
             A  +   M  V D   W  ++  C +    E +  +  +L+R
Sbjct: 959  RARTVFWQMNEV-DLVSWNTMISGCALSGLEECSVGMFVDLLR 1000


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 189/538 (35%), Positives = 311/538 (57%), Gaps = 12/538 (2%)

Query: 74   ENLSLQNPQVYL--YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACW-- 128
            E   + +P++ L  +N +I   +  N  +EAI  +R++L  GL P+ +TL  VL+AC   
Sbjct: 949  EKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG 1008

Query: 129  -QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDL 187
             + +   +G QVH Y++K  ++++ +V   L+ LY+  G +     L H +       DL
Sbjct: 1009 DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKY----DFDL 1064

Query: 188  VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
             SW  ++  Y+K +   +A+  F  M +  +  D + L   + A   L +L  G +I  Y
Sbjct: 1065 ASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAY 1124

Query: 248  ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
                 FN   D+++ + ++DMY+KCG++P+A ++F E+   + V+W +MI+G    G   
Sbjct: 1125 AIKLGFN--NDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDED 1182

Query: 308  EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
             AL ++  M+  G++PD++T   ++ + + +  LE GK +H  + K   + D F+G +LV
Sbjct: 1183 HALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLV 1242

Query: 368  DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
            DMY KCG +  A+ VFR M  R V  + AM++GLA HG   +AL++F  M   GI+PD+V
Sbjct: 1243 DMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKV 1302

Query: 428  TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
            TF+GVLSACSH+GL  E  K+F  M + Y + P+ EHY C+VD  GRAG I+EA ++I S
Sbjct: 1303 TFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIAS 1362

Query: 488  MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
            MP    A ++ ALLGAC+     E A+ V + L+  +P    AY+L++NIY++  +W + 
Sbjct: 1363 MPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDV 1422

Query: 548  LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
               R  MK + VKK PG S ++V  + + F   D+SHP+   IY+ ++++M + +  G
Sbjct: 1423 TDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEG 1480



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 221/443 (49%), Gaps = 20/443 (4%)

Query: 79   QNPQVYLYNF-IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
            Q   ++ +N  + + L     + AI  ++ +L   +  ++ TL  +L A   +  L +G+
Sbjct: 855  QGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGE 914

Query: 138  QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            Q+HA  +K++    V V N+LM +Y+  G++ A  K   F   P+   DL+SW T+I +Y
Sbjct: 915  QIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKT--FINSPEL--DLISWNTMISSY 970

Query: 198  VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD----LSLGIKIHRYITDNHF 253
             + +   EAI +F D+ +  L+PD   L  VL ACS  GD     +LG ++H Y      
Sbjct: 971  AQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACST-GDEGEYFTLGSQVHVYAI--KC 1027

Query: 254  NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
             +  D F+  ALID+Y K G +  A  +       ++ SWN+++ G     + ++AL+ F
Sbjct: 1028 GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 314  RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
              M  +G+  D+ TL   + +   +  L+ GK +  Y  K   N D ++ + ++DMY KC
Sbjct: 1088 SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKC 1147

Query: 374  GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
            G +  A  +F  +   D  ++T MI G   +G    AL ++  M   G++PDE TF  ++
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207

Query: 434  SACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHY--GCMVDLFGRAGLIREALDLIKSMPL 490
             A S    +E+G + H    + V  L    +H+    +VD++ + G +++A  + + M +
Sbjct: 1208 KASSCLTALEQGKQIH----ANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDV 1263

Query: 491  VPDAFVWGALLGACKIHAKVELA 513
                F W A+L     H  V+ A
Sbjct: 1264 RKVVF-WNAMLLGLAQHGHVDEA 1285



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 166/341 (48%), Gaps = 29/341 (8%)

Query: 173  KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
            K+F F Q      ++ +W   +  ++       AI  F  + ++ +  D + LVI+LSA 
Sbjct: 849  KMFPFDQGS----NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 233  SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
                DL LG +IH  +  + F  +P V + N+L++MY K G + +A K F   P  +++S
Sbjct: 905  VGADDLDLGEQIHALVIKSSF--APVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLIS 962

Query: 293  WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG---WLELGKWVHT 349
            WN+MI+         EA+  FR +   GLKPD FTL  VL +C+      +  LG  VH 
Sbjct: 963  WNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHV 1022

Query: 350  YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
            Y  K  I  D F+  AL+D+Y+K G++D+A  +       D+ S+ A++ G     K+ K
Sbjct: 1023 YAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRK 1082

Query: 410  ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG--- 466
            AL+ FS M ++GI  DE+T    + A         GC   +++ +   +Q      G   
Sbjct: 1083 ALEHFSLMHEMGIPIDEITLATAIKAS--------GC--LINLKQGKQIQAYAIKLGFNN 1132

Query: 467  ------CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
                   ++D++ + G +  AL+L   +   PD   W  ++
Sbjct: 1133 DLWVSSGVLDMYIKCGDMPNALELFGEISR-PDEVAWTTMI 1172



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/465 (23%), Positives = 190/465 (40%), Gaps = 67/465 (14%)

Query: 41   KQFHAFIIKTGS-PQ----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCL-- 93
            K+ HA I+ +G  P     +    +Y K  SL    ++ + S  +  +  +N I+     
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKS-SDRDLVTWNSILAAYAQ 689

Query: 94   ----SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
                S  N LE   L+  +   G      TL  +LK C  S  ++V + VH Y++K    
Sbjct: 690  FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFE 749

Query: 150  SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
             +++V   L+ +Y   GL+     LF        +RD V W  +++AYV+  +  EA+  
Sbjct: 750  LDLFVSGALVNIYCKYGLVGQARLLFD----KMPERDAVLWNVMLKAYVENSFQDEALRF 805

Query: 210  FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
            F    ++   PD   L  V+   +                    ++S +   H   +  Y
Sbjct: 806  FSAFHRSGFFPDFSNLHCVIGGVNS-------------------DVSNNRKRHAEQVKAY 846

Query: 270  LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
                    A K+F      N+ +WN  +    H GQ   A+D F+ +    +  D  TLV
Sbjct: 847  --------AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLV 898

Query: 330  CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
             +L++      L+LG+ +H  + K+       + N+L++MY+K G +  A   F +    
Sbjct: 899  IILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPEL 958

Query: 390  DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
            D+ S+  MI   A +    +A+  F ++ + G++PD+ T   VL ACS            
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---------- 1008

Query: 450  LDMSRVYNLQPQTEHYG-------------CMVDLFGRAGLIREA 481
             D    + L  Q   Y               ++DL+ + G + EA
Sbjct: 1009 -DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 170/394 (43%), Gaps = 37/394 (9%)

Query: 133  LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
            L++G++ HA  + +  L + Y+ N L+ +Y+ CG + +  ++F       + RDLV+W +
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFD----KSSDRDLVTWNS 682

Query: 193  LIQAYVKM-DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL-----GDLSLGIKIHR 246
            ++ AY +  D   E +L  F +    LR  G  +  +  A         G + +   +H 
Sbjct: 683  ILAAYAQFADSSYENVLEGFRLFGL-LREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG 741

Query: 247  YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
            Y     F L  D+F+  AL+++Y K G +  AR +FD+MP ++ V WN M+         
Sbjct: 742  YAVKIGFEL--DLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQ 799

Query: 307  KEALDIFRRMQGLGLKPDDFTLVCVL---NSCANIGWLELGKWVHTYLDKNHINTDG--- 360
             EAL  F      G  PD   L CV+   NS  +       + V  Y  K      G   
Sbjct: 800  DEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNI 859

Query: 361  FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            F  N  +  +   G+I  A   F+++    +   +  +V +         LD+  ++  +
Sbjct: 860  FAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHAL 919

Query: 421  GIEPDEVTFVGV----LSACSHAGLVEEGCKHFLDMSRVYNLQPQTE--HYGCMVDLFGR 474
             I+      V V    ++  S AG+V    K F++        P+ +   +  M+  + +
Sbjct: 920  VIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFIN-------SPELDLISWNTMISSYAQ 972

Query: 475  AGLIREAL----DLIKSMPLVPDAFVWGALLGAC 504
              L  EA+    DL++   L PD F   ++L AC
Sbjct: 973  NNLEMEAICTFRDLLRD-GLKPDQFTLASVLRAC 1005


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 202/585 (34%), Positives = 327/585 (55%), Gaps = 24/585 (4%)

Query: 39  QLKQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQC 92
           + +  H  I+KTG  +    +     +Y K   +   +++ +NL  +N   +    +   
Sbjct: 76  EARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWT-TLLTGY 134

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N++PL A+ L+ +ML  G  P+ YTL  VL AC   QS+  G+QVHAY +K  +  + 
Sbjct: 135 VQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDT 194

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            + N+L   Y+    ++   K F   +    ++D++SWT++I +         ++  F D
Sbjct: 195 SIGNSLSSFYSKFRRLEFAIKAFKIIK----EKDVISWTSVISSCCDNGQAARSLSFFMD 250

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M    ++P+   L  VLSAC  +  L LG +IH       +  S  + I N+++ +YLKC
Sbjct: 251 MLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSS--ILIKNSIMYLYLKC 308

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE-----------ALDIFRRMQGLGL 321
           G +  A+K+F+ M   N+V+WN+MIAG        E           AL +F+++   G+
Sbjct: 309 GWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGM 368

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           KPD FT   VL+ C+N+  LE G+ +H  + K+ +  D  +G ALV MY KCG ID+A  
Sbjct: 369 KPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASK 428

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
            F  M  R + S+T+MI G A HG + +AL +F +M  VGI+P++VTFVGVLSACSHAGL
Sbjct: 429 AFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGL 488

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
            +E   +F  M + YN++P  +H+ C++D++ R G + EA D++  M   P+  +W  L+
Sbjct: 489 ADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLI 548

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
             C+ H K +L     E L++ +P+    Y+ + N++ S  RWK+  K+RK MKE KV K
Sbjct: 549 AGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGK 608

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
               S + +  + Y F+  DKSH ++LE+YKLL+ ++++ K  GY
Sbjct: 609 LKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGY 653



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 229/489 (46%), Gaps = 57/489 (11%)

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
           + ++Y  P +L+ C         + +H + +KT    +++V   L+ +Y+ CG++++ HK
Sbjct: 56  IESSYYFP-LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHK 114

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
           +F        +R++ +WTTL+  YV+  +P  A+  F  M +A   P    L IVL+ACS
Sbjct: 115 VF----DNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACS 170

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
            L  +  G ++H Y+   H +   D  I N+L   Y K   +  A K F  +  K+V+SW
Sbjct: 171 SLQSIEFGKQVHAYLIKYHIDF--DTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISW 228

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
            S+I+     GQ   +L  F  M   G+KP+++TL  VL++C  +  L+LG  +H+   K
Sbjct: 229 TSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIK 288

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG-----------LA 402
               +   I N+++ +Y KCG + +A  +F  M+  ++ ++ AMI G           +A
Sbjct: 289 LGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVA 348

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG----------------- 445
            H     AL +F ++ + G++PD  TF  VLS CS+   +E+G                 
Sbjct: 349 AHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVV 408

Query: 446 -----------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMPLV- 491
                      C      S+ +   P      +  M+  F R GL ++AL L + M LV 
Sbjct: 409 VGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVG 468

Query: 492 --PDAFVWGALLGACKIHAKVELAEI----VMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
             P+   +  +L AC  HA +    +    +M+     +P  D  +  + ++Y    R +
Sbjct: 469 IKPNQVTFVGVLSACS-HAGLADEALYYFELMQKQYNIKPVMD-HFACLIDMYLRLGRVE 526

Query: 546 EALKLRKKM 554
           EA  +  KM
Sbjct: 527 EAFDVVHKM 535



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%)

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
           LG + +      +L  C +       + +H ++ K   + D F+   LV++Y+KCG ++ 
Sbjct: 52  LGTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMES 111

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  VF ++  R+V ++T ++ G   +     AL +F +M + G  P   T   VL+ACS 
Sbjct: 112 AHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSS 171

Query: 439 AGLVEEG 445
              +E G
Sbjct: 172 LQSIEFG 178


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 213/588 (36%), Positives = 314/588 (53%), Gaps = 51/588 (8%)

Query: 25  LHQSPRLESSKSVGQLKQFHAFIIKTGSPQ-----HQTQILYDKIISLSRGNEIENLSLQ 79
           LH       SKS+ + K+ H   +K  S       H+   LY     +     + +  + 
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD-EIP 70

Query: 80  NPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           NP V L+N II+  +   P + AI LY  ML  G+ PN YT P+VLKAC    ++  G +
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +H+++    L S+V+V   L+  YA CG++    +LF    H    RD+V+W  +I    
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH----RDVVAWNAMIAGCS 186

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
                 +A+     M +  + P+   +V VL  C  L                       
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCL----------------------- 223

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
                    +Y        ARK+FD M V+N VSW++MI G       KEALDIFR MQ 
Sbjct: 224 ---------LY--------ARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQL 266

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G+ PD  T++ VL +C+++  L+ G   H YL      TD  I NAL+DMY+KCG+I  
Sbjct: 267 SGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISF 326

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  VF  M   D+ S+ AMI+G  IHG   +AL +F ++  +G++PD++TF+ +LS+CSH
Sbjct: 327 AREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSH 386

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           +GLV EG   F  MSR +++ P+ EH  CMVD+ GRAGLI EA   I++MP  PD  +W 
Sbjct: 387 SGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWS 446

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           ALL AC+IH  +EL E V + +    PE  G ++L++NIYS+  RW +A  +R   K+  
Sbjct: 447 ALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWG 506

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           +KK PGCS +E+ G  + F  GD+SH +  +I + L+E++ + K  GY
Sbjct: 507 LKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGY 554


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 185/514 (35%), Positives = 300/514 (58%), Gaps = 40/514 (7%)

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           L++C     L++   +HA+ ++   + +V+  + L+ +     L+    ++F+  Q+P  
Sbjct: 22  LESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNP-- 76

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
             +L  + + I+ +     P ++   +    +  L PD +    ++ AC++ G L +GI+
Sbjct: 77  --NLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQ 134

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMY-------------------------------LKC 272
            H  I  + F+   DV++ N+L+ MY                               +K 
Sbjct: 135 AHGQIIRHGFD--SDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKS 192

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G++ SARK+FD+MP KN+V+W+ MI+G      F +A++++  +Q  G+  ++  +V V+
Sbjct: 193 GDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVI 252

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            SCA++G LELG+  H Y+ +N +  +  +G ALVDMYA+CG ID+A  VF  +  RD  
Sbjct: 253 ASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDAL 312

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+T +I G A+HG A KAL+ FS M + G+ P E+TF  VLSACSH GLVE G + F  M
Sbjct: 313 SWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESM 372

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
            R Y ++P+ EHYGCMVDL GRAG + EA   +  MP+ P+A +WGALLGAC+IH   E+
Sbjct: 373 KRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEI 432

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           AE   + L+  +PE  G Y+L++NIY+  N+W+    +R+ MKER V K PG +L E+ G
Sbjct: 433 AERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDG 492

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           + ++F  GDK+HP+  +I ++ +EI+ + +  GY
Sbjct: 493 KVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGY 526



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 200/391 (51%), Gaps = 53/391 (13%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDK-----IISLSRGNEIENLS------LQ 79
           LES  ++  LK  HA +I+          ++D      +IS+S    + + +      +Q
Sbjct: 22  LESCTTLSHLKIIHAHLIRA-------HTIFDVFAASCLISISINKNLLDYAAQVFYQIQ 74

Query: 80  NPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           NP +++YN  I+  S + +P ++   Y +    GL+P+  T P+++KAC Q  SL +G Q
Sbjct: 75  NPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQ 134

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH---------------------- 176
            H   ++    S+VYV N+L+ +Y+  G IK+   +F                       
Sbjct: 135 AHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGD 194

Query: 177 -------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
                  F + P  +++LV+W+ +I  Y K  +  +AI  +F +    +  +  ++V V+
Sbjct: 195 VTSARKLFDKMP--EKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVI 252

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           ++C+ LG L LG + H YI  N   ++ ++ +  AL+DMY +CG+I  A  VFD++P ++
Sbjct: 253 ASCAHLGALELGERAHDYILRN--KMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRD 310

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
            +SW ++IAG    G  ++AL+ F RM+  GL P + T   VL++C++ G +E G  +  
Sbjct: 311 ALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFE 370

Query: 350 YLDKNH-INTDGFIGNALVDMYAKCGRIDQA 379
            + +++ I         +VD+  + G++ +A
Sbjct: 371 SMKRDYRIEPRLEHYGCMVDLLGRAGKLAEA 401


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 198/612 (32%), Positives = 339/612 (55%), Gaps = 44/612 (7%)

Query: 34  SKSVGQLKQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           S++ G   Q H  I+K G       Q+     Y +   L    ++ +   +   V   + 
Sbjct: 147 SRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSM 206

Query: 89  IIQCLSNANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           I          +A+ L+  M+  + + PN+ T+  V+ AC + + L  G++V+A+   + 
Sbjct: 207 ICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSG 266

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
           +  N  + + L+ +Y  C  I    +LF   ++  +  DL +   +   YV+     EA+
Sbjct: 267 IEVNDLMVSALVDMYMKCNAIDVAKRLFD--EYGASNLDLCN--AMASNYVRQGLTREAL 322

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F  M  + +RPD + ++  +S+CS+L ++  G   H Y+  N F    +  I NALID
Sbjct: 323 GVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDN--ICNALID 380

Query: 268 MYLKC-------------------------------GNIPSARKVFDEMPVKNVVSWNSM 296
           MY+KC                               G + +A + F+ MP KN+VSWN++
Sbjct: 381 MYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTI 440

Query: 297 IAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           I+GL     F+EA+++F  MQ   G+  D  T++ + ++C ++G L+L KW++ Y++KN 
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNG 500

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           I  D  +G  LVDM+++CG  + A  +F S+  RDV ++TA I  +A+ G A +A+++F 
Sbjct: 501 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFD 560

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           +M + G++PD V FVG L+ACSH GLV++G + F  M +++ + P+  HYGCMVDL GRA
Sbjct: 561 DMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRA 620

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
           GL+ EA+ LI+ MP+ P+  +W +LL AC++   VE+A    E +    PE  G+Y+L++
Sbjct: 621 GLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLS 680

Query: 536 NIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           N+Y+S  RW +  K+R  MKE+ ++K PG S +++ G+ +EF  GD+SHP+   I  +LD
Sbjct: 681 NVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLD 740

Query: 596 EIMHQSKNHGYI 607
           E+  ++ + G++
Sbjct: 741 EVSQRASHLGHV 752



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 165/585 (28%), Positives = 292/585 (49%), Gaps = 84/585 (14%)

Query: 3   SPLTVASGSRYNDINTFQQLSLLHQS-------PRLESSKSVGQLKQFHAFIIKTGSPQH 55
           SP+ +A+        T  + SLL+QS         L++ K++ +LK FH  + K G    
Sbjct: 11  SPMVLAT-------TTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDND 63

Query: 56  QTQILYDKII----------SLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIAL 104
            + I   K++          SLS   E+   S      ++YN +I+  +++    EAI L
Sbjct: 64  VSTIT--KLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILL 121

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           +  M+  G+ P+ YT P+ L AC +S++   G Q+H   +K     +++V N+L+  YA 
Sbjct: 122 FLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAE 181

Query: 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGM 223
           CG + +  K+F       ++R++VSWT++I  Y + D+  +A+  FF M +   + P+ +
Sbjct: 182 CGELDSARKVF----DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237

Query: 224 ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
            +V V+SAC+KL DL  G K++ +I ++   ++ D+ + +AL+DMY+KC  I  A+++FD
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVN-DLMV-SALVDMYMKCNAIDVAKRLFD 295

Query: 284 EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLEL 343
           E    N+   N+M +    +G  +EAL +F  M   G++PD  +++  ++SC+ +  +  
Sbjct: 296 EYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILW 355

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           GK  H Y+ +N   +   I NAL+DMY KC R D AF +F  M  + V ++ +++ G   
Sbjct: 356 GKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVE 415

Query: 404 HGK---AW----------------------------KALDIFSEM-SQVGIEPDEVTFVG 431
           +G+   AW                            +A+++F  M SQ G+  D VT + 
Sbjct: 416 NGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMS 475

Query: 432 VLSACSHAGLVEEGCKHFLDMSR-VY------NLQPQTEHYGCMVDLFGRAGLIREALDL 484
           + SAC H G         LD+++ +Y       +Q        +VD+F R G    A+ +
Sbjct: 476 IASACGHLGA--------LDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSI 527

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR--FEPEG 527
             S+    D   W A +GA  +    E A  + ++++    +P+G
Sbjct: 528 FNSLT-NRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 194/546 (35%), Positives = 309/546 (56%), Gaps = 7/546 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNP--QVYLYNFIIQCLSNANPLEAI-ALYREMLIKGLLPN 116
           + D  +   + ++  NL  + P   +  +N +I   S    L+ +  L+  M + G  P+
Sbjct: 93  MVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPD 152

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
             T+  + +A   ++SLR  + VHA  ++T L ++  V NT +  Y+ CG ++    +FH
Sbjct: 153 AATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAAYSKCGELQLAKMVFH 212

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
             Q  +  R  VSW +LI  Y       +A+ S+  +     +PD   ++ +LS+C +  
Sbjct: 213 GIQ--KTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPE 270

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
            L  G  IH +          D+ + N LI MY +CG+I SA  +FD M ++  VSW +M
Sbjct: 271 ALIYGFLIHGH--GFQLGCDSDISLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAM 328

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           I+G +  G+  +AL +F  M+  G KPD  T++ +++ C   G L LG W+  Y   + +
Sbjct: 329 ISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHEL 388

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
             D  + NAL+DMYAKCG ++ A  +F S+  R V S+TAMI   A++G+  +ALD+FS 
Sbjct: 389 KKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSL 448

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           +S+ GIEP+ +TF+ VL AC H G +E+G + F+ M+  Y + P  +HY CM+DL GR G
Sbjct: 449 LSESGIEPNNITFLAVLQACCHGGYLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKG 508

Query: 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536
            + EAL++I+ MP+ PD  +WGALLGACKIH  +E+ E V   L   +P    +++ M N
Sbjct: 509 KLIEALEVIQDMPMKPDEGIWGALLGACKIHNNMEIGEYVSRYLFELQPRVAVSFVEMAN 568

Query: 537 IYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDE 596
           IY+S  RW E   +RK M+  +++K+PG S+V+V G  + F   D+SH  +L IY+ L  
Sbjct: 569 IYASVGRWDEVAAMRKTMRSNQMRKSPGKSVVQVNGMSHVFFVEDRSHHDSLLIYEALGN 628

Query: 597 IMHQSK 602
           +  Q K
Sbjct: 629 LAMQMK 634



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 208/424 (49%), Gaps = 12/424 (2%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           ++  N  +A+AL+ ++ + GL PN +T P++ KAC +   L   Q +H + +K+   S++
Sbjct: 28  VNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHTHVVKSPFYSDI 87

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           YV   ++ +Y  CG +   + LF         R++ SW  +I  + ++         F  
Sbjct: 88  YVQTAMVDMYVKCGKVDDAYNLF----DKMPVRNIASWNAMIIGFSQIGSLDRVFNLFMG 143

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M     RPD   ++ +  A      L     +H    +    L  D  + N  I  Y KC
Sbjct: 144 MRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIET--GLDADTSVSNTWIAAYSKC 201

Query: 273 GNIPSARKVFD--EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           G +  A+ VF   +   ++ VSWNS+IA   H G++ +A+  ++ +   G KPD  T++ 
Sbjct: 202 GELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTIIS 261

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           +L+SC     L  G  +H +  +   ++D  + N L+ MY++CG I  A  +F  M  R 
Sbjct: 262 LLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFDGMSIRT 321

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
             S+TAMI G +  G+   AL +F+ M + G +PD VT + ++S C   G +  G  H++
Sbjct: 322 CVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGAL--GLGHWI 379

Query: 451 D-MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           D  + ++ L+        ++D++ + G + +A ++  S+P       W A++ AC ++ +
Sbjct: 380 DNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLP-NRTVVSWTAMIAACALNGE 438

Query: 510 VELA 513
              A
Sbjct: 439 FREA 442



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 199/382 (52%), Gaps = 17/382 (4%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIE-------NLSLQNPQVYL 85
           S+KS+  LK  HA  I+TG     T +    I + S+  E++        +         
Sbjct: 165 SAKSLRFLKAVHAIGIETG-LDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVS 223

Query: 86  YNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I C ++    ++A+  Y+ +L  G  P+  T+  +L +C Q ++L  G  +H +  
Sbjct: 224 WNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGF 283

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           +    S++ + NTL+ +Y+ CG I +   LF       + R  VSWT +I  Y ++    
Sbjct: 284 QLGCDSDISLINTLISMYSRCGDISSATILF----DGMSIRTCVSWTAMISGYSEVGRVD 339

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           +A++ F  M +   +PD + ++ ++S C K G L LG  I  Y + +   L  DV + NA
Sbjct: 340 DALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHE--LKKDVVVCNA 397

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LIDMY KCG++  AR++F  +P + VVSW +MIA     G+F+EALD+F  +   G++P+
Sbjct: 398 LIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPN 457

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVF 383
           + T + VL +C + G+LE G+     + + + IN      + ++D+  + G++ +A  V 
Sbjct: 458 NITFLAVLQACCHGGYLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVI 517

Query: 384 RSMKCR-DVYSYTAMIVGLAIH 404
           + M  + D   + A++    IH
Sbjct: 518 QDMPMKPDEGIWGALLGACKIH 539



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 157/338 (46%), Gaps = 10/338 (2%)

Query: 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
           L  W + I+  V     ++A+  F  +    L+P+      +  AC+KL  L+    IH 
Sbjct: 17  LTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHT 76

Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
           ++  + F    D+++  A++DMY+KCG +  A  +FD+MPV+N+ SWN+MI G +  G  
Sbjct: 77  HVVKSPF--YSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSL 134

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
               ++F  M+ +G +PD  T++ +  +  +   L   K VH    +  ++ D  + N  
Sbjct: 135 DRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTW 194

Query: 367 VDMYAKCGRIDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
           +  Y+KCG +  A  VF  ++   R   S+ ++I   A  GK   A+  +  +   G +P
Sbjct: 195 IAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKP 254

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREAL 482
           D  T + +LS+C     +  G   FL     + L   ++      ++ ++ R G I  A 
Sbjct: 255 DASTIISLLSSCQQPEALIYG---FLIHGHGFQLGCDSDISLINTLISMYSRCGDISSAT 311

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
            L   M  +     W A++       +V+ A ++   +
Sbjct: 312 ILFDGMS-IRTCVSWTAMISGYSEVGRVDDALVLFNAM 348


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 187/515 (36%), Positives = 299/515 (58%), Gaps = 13/515 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKAC-WQ-SQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           EA  L+ E    GL P+ +++  +L  C W  +  L +G+QVH  ++K+ L S+V V N+
Sbjct: 267 EAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANS 326

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +Y+  G      ++F+  +H     DL+SW ++I +  +     E++  F D+    
Sbjct: 327 LVNMYSKMGCAYFAREVFNDMKH----LDLISWNSMISSCAQSSLEEESVNLFIDLLHEG 382

Query: 218 LRPD-----GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           L+PD      + L     AC  L  L  G +IH +     F+   D+ +++ ++DMY+KC
Sbjct: 383 LKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFD--SDLHVNSGILDMYIKC 440

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G++ +A  VF+ +   + V+W SMI+G    G   +AL I+ RM+   + PD++T   ++
Sbjct: 441 GDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLI 500

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            + + +  LE G+ +H  + K    +D F+G +LVDMYAKCG I+ A+ +F+ M  R++ 
Sbjct: 501 KASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIA 560

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            + AM+VGLA HG A +A+++F  M   GIEPD V+F+G+LSACSHAGL  E  ++   M
Sbjct: 561 LWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSM 620

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              Y ++P+ EHY C+VD  GRAGL++EA  +I++MP    A +  ALLGAC+I   VE 
Sbjct: 621 PNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVET 680

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            + V   L   EP    AY+L++NIY++ NRW +    RK MK + VKK PG S ++V  
Sbjct: 681 GKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKN 740

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             + F   D+SHP+   IY  ++E+M   +  GY+
Sbjct: 741 MLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYV 775



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 146/495 (29%), Positives = 248/495 (50%), Gaps = 35/495 (7%)

Query: 41  KQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS- 94
           K  HA I+ +GS       +    +Y K  SLS   ++ + + +   V  +N I+   + 
Sbjct: 97  KCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLV-TWNAILGAYAA 155

Query: 95  -----NANPLEAIALYREMLIKGLLPNT--YTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
                + N  E + L+R  L++  L +T   TL  VLK C  S  L   + VH Y++K  
Sbjct: 156 SVDSNDGNAQEGLHLFR--LLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIG 213

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
           L  +V+V   L+ +Y+ CG ++    LF + +    +RD+V W  +++ YV++    EA 
Sbjct: 214 LEWDVFVSGALVNIYSKCGRMRDARLLFDWMR----ERDVVLWNMMLKGYVQLGLEKEAF 269

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLG--DLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
             F +  ++ LRPD   + ++L+ C   G  DL LG ++H     +   L  DV + N+L
Sbjct: 270 QLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKS--GLDSDVSVANSL 327

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           ++MY K G    AR+VF++M   +++SWNSMI+        +E++++F  +   GLKPD 
Sbjct: 328 VNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDH 387

Query: 326 FTLVCVL-----NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           FTL  +       +C  +  L+ GK +H +  K   ++D  + + ++DMY KCG +  A 
Sbjct: 388 FTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAG 447

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  +   D  ++T+MI G   +G   +AL I+  M Q  + PDE TF  ++ A S   
Sbjct: 448 IVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVT 507

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHY--GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
            +E+G +     + V  L   ++ +    +VD++ + G I +A  L K M  V +  +W 
Sbjct: 508 ALEQGRQLH---ANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMN-VRNIALWN 563

Query: 499 ALLGACKIHAKVELA 513
           A+L     H   E A
Sbjct: 564 AMLVGLAQHGNAEEA 578



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 189/397 (47%), Gaps = 26/397 (6%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+    + +L +G+  HA  + +    + ++ N L+ +Y+ CG + +  ++F       
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVF----DTT 138

Query: 183 AQRDLVSWTTLIQAYVKM----DYPTEAILSFFDMCQANL-RPDGMILVIVLSACSKLGD 237
            +RDLV+W  ++ AY       D   +  L  F + +A+L     M L  VL  C   G 
Sbjct: 139 PERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGC 198

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L     +H Y       L  DVF+  AL+++Y KCG +  AR +FD M  ++VV WN M+
Sbjct: 199 LWAAEGVHGYAI--KIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMML 256

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC--ANIGWLELGKWVHTYLDKNH 355
            G    G  KEA  +F      GL+PD+F++  +LN C  A    LELGK VH    K+ 
Sbjct: 257 KGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSG 316

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           +++D  + N+LV+MY+K G    A  VF  MK  D+ S+ +MI   A      +++++F 
Sbjct: 317 LDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFI 376

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           ++   G++PD  T   +  A +       GC   LD  +   +       G   DL   +
Sbjct: 377 DLLHEGLKPDHFTLASITLATAAKAC---GCLVLLDQGK--QIHAHAIKAGFDSDLHVNS 431

Query: 476 GLIREAL---DLIKSMPL-----VPDAFVWGALLGAC 504
           G++   +   D++ +  +      PD   W +++  C
Sbjct: 432 GILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGC 468



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 14/268 (5%)

Query: 39  QLKQFHAFIIKTG--SPQHQTQILYDKII---SLSRGNEIENLSLQNPQVYLYNFIIQCL 93
           Q KQ HA  IK G  S  H    + D  I    +     + N       V   + I  C+
Sbjct: 410 QGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCV 469

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
            N N  +A+ +Y  M    ++P+ YT   ++KA     +L  G+Q+HA  +K   +S+ +
Sbjct: 470 DNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPF 529

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V  +L+ +YA CG I+  ++LF         R++  W  ++    +     EA+  F  M
Sbjct: 530 VGTSLVDMYAKCGNIEDAYRLF----KKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSM 585

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD--NHFNLSPDVFIHNALIDMYLK 271
               + PD +  + +LSACS  G   L  + + Y+    N + + P++  ++ L+D   +
Sbjct: 586 KSHGIEPDRVSFIGILSACSHAG---LTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGR 642

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G +  A KV + MP K   S N  + G
Sbjct: 643 AGLVQEADKVIETMPFKASASINRALLG 670


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 206/602 (34%), Positives = 329/602 (54%), Gaps = 54/602 (8%)

Query: 60  LYDKIISLSRGNEIENLSLQN--PQVYLYNFIIQC-LSNANPLEAIALYREM-LIKGLLP 115
           +Y +  SL   + I +   Q     V  +N I+   + ++N   A+ L+ +M LI    P
Sbjct: 54  MYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKP 113

Query: 116 -----NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI-- 168
                +  ++  +L AC   +++   ++VH  +++     +V+V N L+  YA CGL+  
Sbjct: 114 TNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMEN 173

Query: 169 -----------------------------KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
                                        KA  +LF   +      D+V+WT +I  Y +
Sbjct: 174 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQ 233

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY-------ITDNH 252
                EA+  F  M  +   P+ + ++ VLSAC+ LG  S G++IH Y         DN 
Sbjct: 234 RGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDND 293

Query: 253 FN-LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--KNVVSWNSMIAGLTHRGQFKEA 309
           F     D+ ++NALIDMY KC +  +AR +FD++P+  +NVV+W  MI G    G   +A
Sbjct: 294 FGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDA 353

Query: 310 LDIFRRM--QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH--INTDGFIGNA 365
           L +F  M  +  G+ P+ +T+ C+L +CA++  + +GK +H Y+ ++H   ++  F+ N 
Sbjct: 354 LKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANC 413

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           L++MY+KCG +D A  VF SM  +   S+T+M+ G  +HG+  +ALDIF +M + G  PD
Sbjct: 414 LINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPD 473

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
           ++TF+ VL ACSH G+V++G  +F  MS  Y L P+ EHY   +DL  R G + +A   +
Sbjct: 474 DITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTV 533

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
           K MP+ P A VW ALL AC++H+ VELAE  +  LV    E DG+Y L++NIY++  RWK
Sbjct: 534 KDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWK 593

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           +  ++R  MK+  +KK PGCS V+       F  GD+SHP + +IY LL+ ++ + K  G
Sbjct: 594 DVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMG 653

Query: 606 YI 607
           Y+
Sbjct: 654 YV 655



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 216/460 (46%), Gaps = 64/460 (13%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           ML  G   + +TLP+VLKAC +  S R G   H         SNV++ N L+ +Y+ CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC------QANLRPD 221
           ++    +F      +   D++SW +++ A+VK      A+  F  M         N R D
Sbjct: 61  LEEASMIFD-EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
            + +V +L AC  L  +    ++H     N   L  DVF+ NALID Y KCG + +A KV
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFL--DVFVGNALIDAYAKCGLMENAVKV 177

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFK---------------------------------- 307
           F+ M  K+VVSWN+M+AG +  G FK                                  
Sbjct: 178 FNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCS 237

Query: 308 -EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT-------- 358
            EAL++FR+M   G  P+  T++ VL++CA++G    G  +H Y  KN + T        
Sbjct: 238 HEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGE 297

Query: 359 --DGFIGNALVDMYAKCGRIDQAFGVFRS--MKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
             D  + NAL+DMY+KC     A  +F    ++ R+V ++T MI G A +G +  AL +F
Sbjct: 298 DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLF 357

Query: 415 SEM--SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY---GCMV 469
            EM     G+ P+  T   +L AC+H   +  G +    + R +  Q  +  Y    C++
Sbjct: 358 VEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH--QYDSSAYFVANCLI 415

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           +++ + G +  A  +  SM     A  W +++    +H +
Sbjct: 416 NMYSKCGDVDTARHVFDSMSQ-KSAISWTSMMTGYGMHGR 454


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 191/530 (36%), Positives = 299/530 (56%), Gaps = 45/530 (8%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI-------------- 168
           +L AC   +++   ++VH  +++     +V+V N L+  YA CGL+              
Sbjct: 233 ILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 292

Query: 169 -----------------KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
                            KA  +LF   +      D+V+WT +I  Y +     EA+  F 
Sbjct: 293 VVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFR 352

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY-------ITDNHFN-LSPDVFIHN 263
            M  +   P+ + ++ VLSAC+ LG  S G++IH Y         DN F     D+ ++N
Sbjct: 353 QMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 412

Query: 264 ALIDMYLKCGNIPSARKVFDEMPV--KNVVSWNSMIAGLTHRGQFKEALDIFRRM--QGL 319
           ALIDMY KC +  +AR +FD++P+  +NVV+W  MI G    G   +AL +F  M  +  
Sbjct: 413 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 472

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH--INTDGFIGNALVDMYAKCGRID 377
           G+ P+ +T+ C+L +CA++  + +GK +H Y+ ++H   ++  F+ N L++MY+KCG +D
Sbjct: 473 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVD 532

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A  VF SM  +   S+T+M+ G  +HG+  +ALDIF +M + G  PD++TF+ VL ACS
Sbjct: 533 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 592

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           H G+V++G  +F  MS  Y L P+ EHY   +DL  R G + +A   +K MP+ P A VW
Sbjct: 593 HCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVW 652

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
            ALL AC++H+ VELAE  +  LV    E DG+Y L++NIY++  RWK+  ++R  MK+ 
Sbjct: 653 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 712

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +KK PGCS V+       F  GD+SHP + +IY LL+ ++ + K  GY+
Sbjct: 713 GIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYV 762



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/488 (28%), Positives = 226/488 (46%), Gaps = 64/488 (13%)

Query: 80  NPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           +P V+    I + +       AI +   ML  G   + +TLP+VLKAC +  S R G   
Sbjct: 80  SPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAF 139

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H         SNV++ N L+ +Y+ CG ++    +F      +   D++SW +++ A+VK
Sbjct: 140 HGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD-EITQRGIDDVISWNSIVSAHVK 198

Query: 200 MDYPTEAILSFFDMC------QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
                 A+  F  M         N R D + +V +L AC  L  +    ++H     N  
Sbjct: 199 SSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGT 258

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK------ 307
            L  DVF+ NALID Y KCG + +A KVF+ M  K+VVSWN+M+AG +  G FK      
Sbjct: 259 FL--DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELF 316

Query: 308 -----------------------------EALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
                                        EAL++FR+M   G  P+  T++ VL++CA++
Sbjct: 317 KNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASL 376

Query: 339 GWLELGKWVHTYLDKNHINT----------DGFIGNALVDMYAKCGRIDQAFGVFRS--M 386
           G    G  +H Y  KN + T          D  + NAL+DMY+KC     A  +F    +
Sbjct: 377 GAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPL 436

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEM--SQVGIEPDEVTFVGVLSACSHAGLVEE 444
           + R+V ++T MI G A +G +  AL +F EM     G+ P+  T   +L AC+H   +  
Sbjct: 437 EERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 496

Query: 445 GCKHFLDMSRVYNLQPQTEHY---GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           G +    + R +  Q  +  Y    C+++++ + G +  A  +  SM     A  W +++
Sbjct: 497 GKQIHAYVLRHH--QYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQ-KSAISWTSMM 553

Query: 502 GACKIHAK 509
               +H +
Sbjct: 554 TGYGMHGR 561



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 185/375 (49%), Gaps = 62/375 (16%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS--------- 150
           EA+ ++R+M+  G LPN  T+  VL AC    +   G ++HAYS+K  LL+         
Sbjct: 346 EALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGED 405

Query: 151 -NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
            ++ V+N L+ +Y+ C   KA   +F     P  +R++V+WT +I  + +     +A+  
Sbjct: 406 EDLMVYNALIDMYSKCRSFKAARSIFD--DIPLEERNVVTWTVMIGGHAQYGDSNDALKL 463

Query: 210 FFDMCQA--NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
           F +M      + P+   +  +L AC+ L  + +G +IH Y+  +H   S   F+ N LI+
Sbjct: 464 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLIN 523

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY KCG++ +AR VFD M  K+ +SW SM+ G    G+  EALDIF +M+  G  PDD T
Sbjct: 524 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 583

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTD-GFIGNA-----LVDMYAKCGRIDQAFG 381
            + VL +C++ G ++ G    +Y D   ++ D G    A      +D+ A+ GR+D    
Sbjct: 584 FLVVLYACSHCGMVDQGL---SYFDS--MSADYGLTPRAEHYAYAIDLLARFGRLD---- 634

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC---SH 438
                                   KAWK +        + +EP  V +V +LSAC   S+
Sbjct: 635 ------------------------KAWKTV------KDMPMEPTAVVWVALLSACRVHSN 664

Query: 439 AGLVEEGCKHFLDMS 453
             L E      ++M+
Sbjct: 665 VELAEHALNKLVEMN 679



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 132/306 (43%), Gaps = 45/306 (14%)

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
             ++  YL CG    A  V + +     V WN +I     +G+   A+++  RM   G +
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            D FTL  VL +C  +     G   H  +  N   ++ FI NALV MY++CG +++A  +
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 383 FRSMKCR---DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE------PDEVTFVGVL 433
           F  +  R   DV S+ +++        AW ALD+FS+M+ +  E       D ++ V +L
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
            AC     V                 PQT+      ++ G A  IR    L        D
Sbjct: 235 PACGSLKAV-----------------PQTK------EVHGNA--IRNGTFL--------D 261

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
            FV  AL+ A   +AK  L E  ++     E +   ++  M   YS    +K A +L K 
Sbjct: 262 VFVGNALIDA---YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKN 318

Query: 554 MKERKV 559
           M++  +
Sbjct: 319 MRKENI 324


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 192/537 (35%), Positives = 302/537 (56%), Gaps = 14/537 (2%)

Query: 72  EIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
           E+EN+ L N  +  Y  ++  L N+       ++R+M I+ ++PN YT P +LK C +  
Sbjct: 434 EVENVVLWNVMLVAYG-LLDDLRNS-----FRIFRQMQIEEIVPNQYTYPSILKTCIRLG 487

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG-LIKAVHKLFHFRQHPQAQRDLVSW 190
            L +G+Q+H+  +KT+   N YV + L+ +YA  G L  A   L  F     A +D+VSW
Sbjct: 488 DLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF-----AGKDVVSW 542

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
           TT+I  Y + ++  +A+ +F  M    +R D + L   +SAC+ L  L  G +IH     
Sbjct: 543 TTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACV 602

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
           + F  S D+   NAL+ +Y KCGNI  A   F++    + ++WN++++G    G  +EAL
Sbjct: 603 SGF--SSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEAL 660

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
            +F RM   G+  ++FT    + + +    ++ GK VH  + K   +++  + NA++ MY
Sbjct: 661 RVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMY 720

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           AKCG I  A   F  +  ++  S+ AMI   + HG   +ALD F +M    + P+ VT V
Sbjct: 721 AKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLV 780

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
           GVLSACSH GLV++G ++F  M+  Y L P+ EHY C+VD+  RAGL+  A D I  MP+
Sbjct: 781 GVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPI 840

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            PDA VW  LL AC +H  +E+ E    +L+  EPE    Y+L++N+Y+   +W      
Sbjct: 841 EPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLT 900

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R+KMKE+ VKK PG S +EV    + F  GD++HP   EI++   ++  ++   GY+
Sbjct: 901 RQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYV 957



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 148/490 (30%), Positives = 234/490 (47%), Gaps = 17/490 (3%)

Query: 40  LKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENLSLQNPQVYLYNF-----IIQCL 93
           ++Q HA II  G  +  + I+ + +I L SR   ++        +YL +      +I  L
Sbjct: 189 VEQIHARIIYQGLGK--STIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGL 246

Query: 94  S-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           S N   +EAI L+ +M + G++P  Y    VL AC + +SL +G+Q+H   +K    S+ 
Sbjct: 247 SKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDT 306

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           YV N L+ LY   G + +   +F       +QRD V++ TLI    +  Y  +A+  F  
Sbjct: 307 YVCNALVSLYFHLGSLISAEHIFS----NMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 362

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M    L PD   L  ++ ACS  G L  G ++H Y T      + +  I  AL+++Y KC
Sbjct: 363 MQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTT--KLGFASNDKIEGALLNLYAKC 420

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
            +I +A   F E  V+NVV WN M+         + +  IFR+MQ   + P+ +T   +L
Sbjct: 421 SDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL 480

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +C  +G LELG+ +H+ + K     + ++ + L+DMYAK G++D A+ +      +DV 
Sbjct: 481 KTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVV 540

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+T MI G   +    KAL  F +M   GI  DEV     +SAC+    ++EG +     
Sbjct: 541 SWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG-QQIHAQ 599

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
           + V            +V L+ + G I EA  L        D   W AL+   +     E 
Sbjct: 600 ACVSGFSSDLPFQNALVTLYSKCGNIEEAY-LAFEQTEAGDNIAWNALVSGFQQSGNNEE 658

Query: 513 AEIVMENLVR 522
           A  V   + R
Sbjct: 659 ALRVFARMNR 668



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/468 (26%), Positives = 234/468 (50%), Gaps = 27/468 (5%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS--LSRGNEIENLSL--QNPQ--VY 84
           L+++ S+ + ++ H+ I+K G   +    L +K++   L +G+    L +  + P+  ++
Sbjct: 78  LKTNGSLDEGRKLHSQILKLGFDNNAC--LSEKLLDFYLFKGDLDGALKVFDEMPERTIF 135

Query: 85  LYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKAC-WQSQSLRVGQQVHAY 142
            +N +I+ L++ +   +   L+  M+ + + PN  T   VL+AC   S +  V +Q+HA 
Sbjct: 136 TWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHAR 195

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF---HFRQHPQAQRDLVSWTTLIQAYVK 199
            +   L  +  V N L+ LY+  G +    ++F   + + H        SW  +I    K
Sbjct: 196 IIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHS-------SWVAMISGLSK 248

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
            +   EAI  F DM    + P       VLSAC K+  L +G ++H  +       S D 
Sbjct: 249 NECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL--KLGFSSDT 306

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
           ++ NAL+ +Y   G++ SA  +F  M  ++ V++N++I GL+  G  ++A+++F+RMQ  
Sbjct: 307 YVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLD 366

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           GL+PD  TL  ++ +C++ G L  G+ +H Y  K    ++  I  AL+++YAKC  I+ A
Sbjct: 367 GLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETA 426

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
              F   +  +V  +  M+V   +      +  IF +M    I P++ T+  +L  C   
Sbjct: 427 LNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRL 486

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGC--MVDLFGRAGLIREALDLI 485
           G +E G +     S++     Q   Y C  ++D++ + G +  A D++
Sbjct: 487 GDLELGEQIH---SQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDIL 531



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 147/315 (46%), Gaps = 15/315 (4%)

Query: 218 LRPDGMILVIVLSACSKL-GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
           +RP+   L  +L  C K  G L  G K+H  I    F+   +  +   L+D YL  G++ 
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFD--NNACLSEKLLDFYLFKGDLD 120

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A KVFDEMP + + +WN MI  L  R    +   +F RM    + P++ T   VL +C 
Sbjct: 121 GALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACR 180

Query: 337 NIG-WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
                 ++ + +H  +    +     + N L+D+Y++ G +D+A  VF  +  +D  S+ 
Sbjct: 181 GGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWV 240

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSR 454
           AMI GL+ +    +A+ +F +M  +GI P    F  VLSAC     +E G + H L    
Sbjct: 241 AMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGL---- 296

Query: 455 VYNLQPQTEHYGC--MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
           V  L   ++ Y C  +V L+   G +  A  +  +M    DA  +  L+      ++   
Sbjct: 297 VLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQ-RDAVTYNTLINGL---SQCGY 352

Query: 513 AEIVMENLVRFEPEG 527
            E  ME   R + +G
Sbjct: 353 GEKAMELFKRMQLDG 367



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 3/198 (1%)

Query: 316 MQGLGLKPDDFTLVCVLNSCANI-GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           ++  G++P+  TL  +L  C    G L+ G+ +H+ + K   + +  +   L+D Y   G
Sbjct: 58  VENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKG 117

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            +D A  VF  M  R ++++  MI  LA    + K   +F  M    + P+E TF GVL 
Sbjct: 118 DLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLE 177

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           AC    +  +  +          L   T     ++DL+ R G +  A  +   + L  D 
Sbjct: 178 ACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYL-KDH 236

Query: 495 FVWGALL-GACKIHAKVE 511
             W A++ G  K   +VE
Sbjct: 237 SSWVAMISGLSKNECEVE 254


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 183/502 (36%), Positives = 287/502 (57%), Gaps = 8/502 (1%)

Query: 107 EMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC 165
           ++L+ G L P       ++ AC QS++L   + +H++  ++ L  + ++ N+L+ +Y  C
Sbjct: 51  DLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKC 110

Query: 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
           G +     +F         RD+VSWT LI  Y + D P EA+    DM +A  RP G   
Sbjct: 111 GAVSDARHVFD----GIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTF 166

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
              L A    G   +G ++H       +NL  DV++ +AL+DMY +C  +  A +VFD +
Sbjct: 167 TSFLKAAGACGGRGIGEQMHALAVK--YNLDEDVYVGSALLDMYARCQQMDMAIRVFDWL 224

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             KN VSWN++IAG   +G  +  L  F  MQ  G     FT   V ++ A IG LE G+
Sbjct: 225 DSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGR 284

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
           WVH ++ K+      F+ N ++ MYAK G +  A  VF  +  RD+ ++  M+   A +G
Sbjct: 285 WVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYG 344

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
              +A+  F E+ + GI+ +++TF+ VL+ACSH GLV+EG K + DM + YN++P+ +HY
Sbjct: 345 LGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEG-KQYFDMMKDYNVEPEIDHY 403

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
              VDL GRAGL++EAL  +  MP+ P A VWGALLGAC++H   ++ +   +++   +P
Sbjct: 404 VSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDP 463

Query: 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585
           E  G  +L+ NIY+S  +W +A ++RK MK   VKK P CS VE+    + F   D +HP
Sbjct: 464 EDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHP 523

Query: 586 KTLEIYKLLDEIMHQSKNHGYI 607
           K+ EIY++ +E+  + K  GY+
Sbjct: 524 KSEEIYRMWEEVNTRIKKAGYV 545



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 140/286 (48%), Gaps = 6/286 (2%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N  P EA+ L  +ML     P+ +T    LKA        +G+Q+HA ++K  L  +VYV
Sbjct: 141 NDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYV 200

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +YA C  +    ++F +       ++ VSW  LI  + +       ++ F +M 
Sbjct: 201 GSALLDMYARCQQMDMAIRVFDWLD----SKNEVSWNALIAGFARKGDGETTLMKFAEMQ 256

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +            V SA +++G L  G  +H ++  +   L+   F+ N ++ MY K G+
Sbjct: 257 RNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLT--AFVANTILGMYAKSGS 314

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  ARKVFD +  +++V+WN+M+      G  KEA+  F  ++  G++ +  T + VL +
Sbjct: 315 MVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTA 374

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           C++ G ++ GK     +   ++  +     + VD+  + G + +A 
Sbjct: 375 CSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEAL 420


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 183/508 (36%), Positives = 294/508 (57%), Gaps = 8/508 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E+I L+ EM +    P+  T+  +L+AC     L  G+ VH Y + +    +    N L+
Sbjct: 300 ESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILI 358

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG + A  ++F         +D VSW ++I  Y++     EA +  F M + +++
Sbjct: 359 NMYAKCGNLLASQEVFS----GMKCKDSVSWNSMINVYIQNGSFDEA-MKLFKMMKTDVK 413

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  V++LS  ++LGDL LG ++H  +    FN   ++ + N L+DMY KCG +  + 
Sbjct: 414 PDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFN--SNIVVSNTLVDMYAKCGEMGDSL 471

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVF+ M  +++++WN++IA   H       L +  RM+  G+ PD  T++ +L  C+ + 
Sbjct: 472 KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLA 531

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
               GK +H  + K  + +D  +GN L++MY+KCG +  +F VF+ MK +DV ++TA+I 
Sbjct: 532 AKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALIS 591

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
              ++G+  KA+  F EM   GI PD V FV ++ ACSH+GLVEEG  +F  M + Y ++
Sbjct: 592 ACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIE 651

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P+ EHY C+VDL  R+ L+ +A D I SMPL PD+ +WGALL AC++    E+AE V E 
Sbjct: 652 PRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSER 711

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           ++   P+  G Y+L++NIY++  +W +   +RK +K R +KK PGCS +E+  + Y F  
Sbjct: 712 IIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGT 771

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           G K   +  E+ KLL  +       GYI
Sbjct: 772 GTKFFEQFEEVNKLLGMLAGLMAKEGYI 799



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 151/526 (28%), Positives = 259/526 (49%), Gaps = 33/526 (6%)

Query: 20  QQLSLLHQSPR----------LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-- 67
           + L +LH+  R          L S+ +  QL + H+ II  G   H + I   K+I+   
Sbjct: 2   KTLRVLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLG--LHHSVIFSAKLIAKYA 59

Query: 68  -----SRGNEIENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLP 121
                +    +  L+  +  VYL+N II+ L+ N    EA++LY E     L P+TYT P
Sbjct: 60  HFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFP 119

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
            V+ AC       + + +H   +     S++Y+ N L+ +Y     +    K+F      
Sbjct: 120 SVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVF----EE 175

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
              RD+VSW +LI  Y    Y  EA+  ++      + PD   +  VL AC  LG +  G
Sbjct: 176 MPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 235

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
             IH  I      +  DV ++N L+ MY K   +   R++FD+M +++ VSWN+MI G +
Sbjct: 236 DIIHGLI--EKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYS 293

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
             G ++E++ +F  M     KPD  T+  +L +C ++G LE GK+VH Y+  +    D  
Sbjct: 294 QVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 352

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
             N L++MYAKCG +  +  VF  MKC+D  S+ +MI     +G   +A+ +F +M +  
Sbjct: 353 ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTD 411

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           ++PD VT+V +LS  +  G +  G +   D++++            +VD++ + G + ++
Sbjct: 412 VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKM-GFNSNIVVSNTLVDMYAKCGEMGDS 470

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           L + ++M    D   W  ++ +C +H+  E   + +  + R   EG
Sbjct: 471 LKVFENMK-ARDIITWNTIIASC-VHS--EDCNLGLRMISRMRTEG 512



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 130/273 (47%), Gaps = 15/273 (5%)

Query: 77  SLQNPQVYLYNFII-QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           +++   +  +N II  C+ + +    + +   M  +G+ P+  T+  +L  C    + R 
Sbjct: 476 NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 535

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G+++H    K  L S+V V N L+ +Y+ CG ++   ++F   +     +D+V+WT LI 
Sbjct: 536 GKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK----TKDVVTWTALIS 591

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK-IHRYITDNHFN 254
           A        +A+ +F +M  A + PD +  V ++ ACS  G +  G+   HR   D  + 
Sbjct: 592 ACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKD--YK 649

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS-WNSMIAGLTHRGQFKEALDIF 313
           + P +  +  ++D+  +   +  A      MP+K   S W ++++     G  + A  + 
Sbjct: 650 IEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVS 709

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
            R+  + L PDD     ++   +NI +  LGKW
Sbjct: 710 ERI--IELNPDDTGYYVLV---SNI-YAALGKW 736


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 183/495 (36%), Positives = 283/495 (57%), Gaps = 7/495 (1%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L P       ++ AC Q ++L   + +HA+  ++ L  + ++ N+L+ +Y  CG +    
Sbjct: 56  LAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDAR 115

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
            +F         RD+VSWT LI  Y +   P EAI    DM +A  RP+G     +L A 
Sbjct: 116 HVFD----KMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKAT 171

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
              G  S+G ++H       +N   DV++ +AL+DMY +C  +  A  VFD +  KN VS
Sbjct: 172 GACGGCSIGEQMHALAVK--YNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVS 229

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WN++IAG   +   +  L  F  MQ  G     FT   + ++ A IG LE G+WVH +L 
Sbjct: 230 WNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLI 289

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K+      F+GN ++ MYAK G +  A  VF  M  RD+ ++  M+  LA +G   +A+ 
Sbjct: 290 KSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVA 349

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
            F E+ + GI+ +++TF+ VL+ACSH GLV+EG KH+ DM + YN+QP+ +HY   VDL 
Sbjct: 350 HFEEIRKCGIQLNQITFLSVLTACSHGGLVKEG-KHYFDMMKDYNVQPEIDHYVSFVDLL 408

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           GRAGL++EAL  +  MP+ P A VWGALLGAC++H   ++ +   +++   +P+  G  +
Sbjct: 409 GRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPV 468

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           L+ NIY+S  +W +A ++RK MK   VKK P CS V++    + F   D +HPK+ +IY+
Sbjct: 469 LLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYR 528

Query: 593 LLDEIMHQSKNHGYI 607
           + +EI  + K  GY+
Sbjct: 529 MWEEINMRIKKAGYV 543



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 139/286 (48%), Gaps = 6/286 (2%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N  P EAI L  +ML     PN +T   +LKA        +G+Q+HA ++K     +VYV
Sbjct: 139 NYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYV 198

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +YA C  +     +F         ++ VSW  LI  + +       ++ F +M 
Sbjct: 199 GSALLDMYARCEQMDMAIMVF----DRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQ 254

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +            + SA +++G L  G  +H ++  +   L+   F+ N ++ MY K G+
Sbjct: 255 RNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLT--AFVGNTMLGMYAKSGS 312

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  ARKVFD M  +++V+WN+M+  L   G  KEA+  F  ++  G++ +  T + VL +
Sbjct: 313 MVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTA 372

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           C++ G ++ GK     +   ++  +     + VD+  + G + +A 
Sbjct: 373 CSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEAL 418


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 197/571 (34%), Positives = 318/571 (55%), Gaps = 11/571 (1%)

Query: 42  QFHAFIIKTGSPQHQTQ-----ILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H  +I++G     T       +Y K  +L    +I ++  Q   V     I   + N 
Sbjct: 299 QLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNG 358

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
              EA+AL++ M+  G+  ++ T    L +  +S SL+  ++VH+Y ++  +  +VY+ +
Sbjct: 359 FTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKS 418

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+ +Y   G ++   K F          D+   T +I  YV      EA+  F  + Q 
Sbjct: 419 ALVDIYFKGGDVEMACKTFQ----QNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQE 474

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            + P+ + +  VL AC+ L  L LG ++H  I      L     + +++  MY K G + 
Sbjct: 475 GMVPNCLTMASVLPACAALASLKLGKELHCDILKK--GLENVCQVGSSITYMYAKSGRLD 532

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A + F  MPVK+ V WN MI   +  G+ + A+D+FR+M   G K D  +L   L++CA
Sbjct: 533 LAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACA 592

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           N   L  GK +H ++ +N   +D F+ + L+DMY+KCG++  A  VF  M  ++  S+ +
Sbjct: 593 NYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNS 652

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I     HG+  + LD+F EM + GI+PD VTF+ ++SAC HAGLV+EG  +F  M+  Y
Sbjct: 653 IIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEY 712

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            +  + EH+ CMVDL+GRAG + EA D IKSMP  PDA  WG+LLGAC++H  VELA++ 
Sbjct: 713 GICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKLA 772

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            ++LV  +P   G Y+L++N+++    W+  LK+R  MKE+ V+K PG S ++V G  + 
Sbjct: 773 SKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWIDVNGGTHM 832

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           F   D  HP+++EIY +L  ++ + + HGY+
Sbjct: 833 FSAADGCHPQSVEIYLILKNLLLELRKHGYV 863



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 148/514 (28%), Positives = 258/514 (50%), Gaps = 16/514 (3%)

Query: 7   VASGSRYNDINTFQQL-SLLHQSPRLESSKSVGQLKQFHAFII---KTGSPQHQTQILYD 62
           V S SR  + +   QL S+    P  ++S    Q++Q HA ++     GS    +++L  
Sbjct: 61  VLSKSRLFEESLAAQLESMFRAFPNSDASLVKQQVRQIHAKVLVCGMNGSLTLGSRMLGM 120

Query: 63  KIISLSRGNEIENL--SLQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYT 119
            ++  S   ++ NL   LQ      +N++I+  S     + A+  +  ML   + P+ YT
Sbjct: 121 YVLCRSF-KDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYT 179

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
            PYV+KAC    ++ + + VH  +       ++++ ++L++LY   G I     LF   +
Sbjct: 180 FPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFD--E 237

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
            P   RD + W  ++  YVK      A+ +F +M  + ++P+ +  V +LS C+  G + 
Sbjct: 238 LP--VRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVR 295

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            GI++H  +  + F   P V   N +I MY KCGN+  ARK+FD MP  + V+WN +IAG
Sbjct: 296 AGIQLHGLVIRSGFESDPTV--ANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAG 353

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G   EA+ +F+ M   G+K D  T    L S    G L+  K VH+Y+ ++ +  D
Sbjct: 354 YVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFD 413

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            ++ +ALVD+Y K G ++ A   F+     DV   TAMI G  ++G   +AL++F  + Q
Sbjct: 414 VYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQ 473

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G+ P+ +T   VL AC+    ++ G +   D+ +   L+   +    +  ++ ++G + 
Sbjct: 474 EGMVPNCLTMASVLPACAALASLKLGKELHCDILK-KGLENVCQVGSSITYMYAKSGRLD 532

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
            A    + MP V D+  W  ++ +   + K ELA
Sbjct: 533 LAYQFFRRMP-VKDSVCWNLMIVSFSQNGKPELA 565



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 183/389 (47%), Gaps = 11/389 (2%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+HA  +   +  ++ + + ++ +Y +C   K V  LF   Q   +    + W  LI+ 
Sbjct: 96  RQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYS----LPWNWLIRG 151

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           +  +     A++ FF M  +N+ PD      V+ AC  L ++ L   +H       F++ 
Sbjct: 152 FSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHM- 210

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D+FI ++LI +Y   G I  A+ +FDE+PV++ + WN M+ G    G F  AL  F+ M
Sbjct: 211 -DLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEM 269

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +   +KP+  + VC+L+ CA  G +  G  +H  + ++   +D  + N ++ MY+KCG +
Sbjct: 270 RNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNL 329

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
             A  +F  M   D  ++  +I G   +G   +A+ +F  M   G++ D +TF   L + 
Sbjct: 330 FDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSV 389

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP---- 492
             +G ++  CK        + +         +VD++ + G +  A    +   LV     
Sbjct: 390 LKSGSLKY-CKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVC 448

Query: 493 DAFVWGALLGACKIHAKVELAEIVMENLV 521
            A + G +L    + A      ++ E +V
Sbjct: 449 TAMISGYVLNGLNVEALNLFRWLIQEGMV 477


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 204/586 (34%), Positives = 330/586 (56%), Gaps = 13/586 (2%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIEN-----LSLQNPQV 83
           P L++  S+   ++ H +++K G  +H   +    I   SR   +E      + +    V
Sbjct: 155 PVLKACLSLADGEKMHCWVLKMGF-EHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDV 213

Query: 84  YLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
             +N +I     N N  EA+ +   M  + +  +T T+  +L  C QS  +  G  VH Y
Sbjct: 214 GSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLY 273

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +K  L S+V+V N L+ +Y+  G ++   ++F   +     RDLVSW ++I AY + D 
Sbjct: 274 VIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGME----VRDLVSWNSIIAAYEQNDD 329

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
           P  A+  F +M    +RPD + +V + S   +L D  +G  +H ++    + L  D+ I 
Sbjct: 330 PVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRW-LEVDIVIG 388

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GLGL 321
           NAL++MY K G+I  AR VF+++P ++V+SWN++I G    G   EA+D +  M+ G  +
Sbjct: 389 NALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTI 448

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
            P+  T V +L + +++G L+ G  +H  L KN +  D F+   L+DMY KCGR++ A  
Sbjct: 449 VPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMS 508

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           +F  +       + A+I  L IHG   KAL +F +M   G++ D +TFV +LSACSH+GL
Sbjct: 509 LFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGL 568

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           V+E    F  M + Y ++P  +HYGCMVDLFGRAG + +A +L+ +MP+  DA +WG LL
Sbjct: 569 VDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLL 628

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
            AC+IH   EL     + L+  + E  G Y+L++NIY++  +W+ A+K+R   ++R ++K
Sbjct: 629 AACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRK 688

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           TPG S V V      F  G++SHP+  EIY+ L  +  + K+ GY+
Sbjct: 689 TPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYV 734



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 149/501 (29%), Positives = 252/501 (50%), Gaps = 39/501 (7%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQH-----QTQILYDKIISLSRGNEIENLSLQNPQVYL 85
             S  ++   KQ HA ++  G  Q      Q   LY  +  LS  +      +Q   ++ 
Sbjct: 58  FRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFK-HIQRKNIFS 116

Query: 86  YNFIIQC-LSNANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           +N ++   +      +++    E+L + G+ P+ YT P VLKAC    SL  G+++H + 
Sbjct: 117 WNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL---SLADGEKMHCWV 173

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K     +VYV  +L+ LY+  G ++  HK+F         RD+ SW  +I  + +    
Sbjct: 174 LKMGFEHDVYVAASLIHLYSRFGAVEVAHKVF----VDMPVRDVGSWNAMISGFCQNGNV 229

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EA+     M    ++ D + +  +L  C++  D+  G+ +H Y+  +   L  DVF+ N
Sbjct: 230 AEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKH--GLESDVFVSN 287

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           ALI+MY K G +  A++VFD M V+++VSWNS+IA          AL  F+ M  +G++P
Sbjct: 288 ALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRP 347

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           D  T+V + +    +    +G+ VH ++ +   +  D  IGNALV+MYAK G ID A  V
Sbjct: 348 DLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAV 407

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ-VGIEPDEVTFVGVLSACSHAGL 441
           F  +  RDV S+  +I G A +G A +A+D ++ M +   I P++ T+V +L A SH G 
Sbjct: 408 FEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGA 467

Query: 442 VEEGCK---------HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           +++G K          FLD+              C++D++G+ G + +A+ L   +P   
Sbjct: 468 LQQGMKIHGRLIKNCLFLDVFVA----------TCLIDMYGKCGRLEDAMSLFYEIPQ-E 516

Query: 493 DAFVWGALLGACKIHAKVELA 513
            +  W A++ +  IH   E A
Sbjct: 517 TSVPWNAIISSLGIHGHGEKA 537


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 207/583 (35%), Positives = 320/583 (54%), Gaps = 13/583 (2%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQ--VYL 85
           + RLE  + VG L   H+ +    S       + D     +R      +    P+    L
Sbjct: 123 ASRLEDER-VGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVL 181

Query: 86  YNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I   S  +  E +I ++ +ML  GL  ++ TL  VL A  + Q  R+G  +   + 
Sbjct: 182 WNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLAS 241

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K  L S+VYV   L+ LY+ CG  K+      F Q  Q   DL+S+  +I  Y   ++ T
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCG--KSCKGRILFDQIDQP--DLISYNAMISGYT-FNHET 296

Query: 205 EAILSFF-DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
           E+ ++ F ++  +  R +   LV ++        L L   I          L P V    
Sbjct: 297 ESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSV--ST 354

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL  +Y +   +  AR++FDE P K++ SWN+MI+G T  G    A+ +F+ M    L P
Sbjct: 355 ALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSP 413

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           +  T+  +L++CA +G L +GKWVH  +    + ++ ++  ALVDMYAKCG I +A  +F
Sbjct: 414 NPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLF 473

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             M  ++V ++ AMI G  +HG   +AL +F EM Q GI P  VTF+ +L ACSH+GLV 
Sbjct: 474 DLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVS 533

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG + F  M+  Y  QP +EHY CMVD+ GRAG +  AL+ I+ MPL P   VWGALLGA
Sbjct: 534 EGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C IH   E+A +  + L + +PE  G Y+L++NIYS+   + +A  +R+ +K+RK+ KTP
Sbjct: 594 CMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTP 653

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           GC+L+E+  + Y F  GD+SHP+   I+++L+++  + +  GY
Sbjct: 654 GCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGY 696



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/484 (26%), Positives = 223/484 (46%), Gaps = 15/484 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQI--LYDKIISLSRGNEIENL--SLQNPQVYLY 86
           L ++ ++ QL Q  A +I  G     + I  L  K   L     +  L   +  P ++L+
Sbjct: 21  LNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLF 80

Query: 87  NFIIQCLS-NANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           N +I+  S N  P  +I LY  +     L P+ +T  + + A  + +  RVG  +HA+S+
Sbjct: 81  NVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSI 140

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
              + SN++V + ++ LY      +   K+F        +RD V W T+I  + +  Y  
Sbjct: 141 VDGVASNLFVGSAIVDLYFKFTRAELARKVFDV----MPERDTVLWNTMISGFSRNSYFE 196

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           ++I  F DM    L  D   L  VL+A ++L +  LG+ I    +     L  DV++   
Sbjct: 197 DSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKK--GLHSDVYVLTG 254

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LI +Y KCG     R +FD++   +++S+N+MI+G T   + + A+ +FR +   G + +
Sbjct: 255 LISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVN 314

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             TLV ++        L+L + +     K  I     +  AL  +Y +   +  A  +F 
Sbjct: 315 SSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFD 374

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
               + + S+ AMI G   +G   +A+ +F EM    + P+ VT   +LSAC+  G +  
Sbjct: 375 ESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSI 433

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G K    + +   L+        +VD++ + G I EA  L   M +  +   W A++   
Sbjct: 434 G-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGY 491

Query: 505 KIHA 508
            +H 
Sbjct: 492 GLHG 495


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 207/579 (35%), Positives = 308/579 (53%), Gaps = 11/579 (1%)

Query: 34  SKSVGQLKQFHAFIIKTGSPQH--QTQILYDKIISLSRGNEIENL--SLQNPQVYLYNFI 89
           S+++   +Q HA +++ G  +       L D  + + R +    +   + +  V  +N +
Sbjct: 215 SRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNAL 274

Query: 90  IQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I  C+ N +   AI L  +M   GL+PN + L  +LKAC  + +  +G+Q+H + +K   
Sbjct: 275 ISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANA 334

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            S+ Y+   L+ +YA    +    K+F +  H    RDL+ W  LI          EA  
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSH----RDLILWNALISGCSHGGRHDEAFS 390

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F+ + +  L  +   L  VL + + L   S   ++H       F    D  + N LID 
Sbjct: 391 IFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIF--DAHVVNGLIDS 448

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KC  +  A +VF+E    ++++  SMI  L+     + A+ +F  M   GL+PD F L
Sbjct: 449 YWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVL 508

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             +LN+CA++   E GK VH +L K    +D F GNALV  YAKCG I+ A   F S+  
Sbjct: 509 SSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE 568

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           R V S++AMI GLA HG   +AL++F  M   GI P+ +T   VL AC+HAGLV+E  ++
Sbjct: 569 RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRY 628

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M  ++ +    EHY CM+DL GRAG + +A++L+ SMP   +A VWGALLGA ++H 
Sbjct: 629 FNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHK 688

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
             EL ++  E L   EPE  G ++L+ N Y+S   W E  K+RK MK+  +KK P  S V
Sbjct: 689 DPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWV 748

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           EV  + + F  GDKSHP T EIY  LDE+       GYI
Sbjct: 749 EVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYI 787



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 227/463 (49%), Gaps = 43/463 (9%)

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
           +N  P  AI  +  M  +G+  N + LP VLK    +Q   +G QVHA +M T   S+V+
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQ---LGAQVHAMAMATGFGSDVF 136

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V N L+ +Y   G +    ++F       ++R+ VSW  L+ AYVK D   +AI  F +M
Sbjct: 137 VANALVAMYGGFGFMDDARRVF---DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
             + ++P       V++AC+   ++  G ++H  +         DVF  NAL+DMY+K G
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVV--RMGYEKDVFTANALVDMYVKMG 251

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
            +  A  +F++MP  +VVSWN++I+G    G    A+++  +M+  GL P+ F L  +L 
Sbjct: 252 RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILK 311

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +CA  G  +LG+ +H ++ K + ++D +IG  LVDMYAK   +D A  VF  M  RD+  
Sbjct: 312 ACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLIL 371

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HA--- 439
           + A+I G +  G+  +A  IF  + + G+  +  T   VL + +           HA   
Sbjct: 372 WNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAE 431

Query: 440 ------------GLVEE--GCKHFLDMSRVY------NLQPQTEHYGCMVDLFGRAGLIR 479
                       GL++    C    D  RV+      ++   T     +       G I+
Sbjct: 432 KIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIK 491

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
             +++++   L PD FV  +LL AC   +  E  + V  +L++
Sbjct: 492 LFMEMLRK-GLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 217/463 (46%), Gaps = 19/463 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI ++ EM+  G+ P  +    V+ AC  S+++  G+QVHA  ++     +V+  N L+
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALV 244

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y   G +     +  F + P +  D+VSW  LI   V   +   AI     M  + L 
Sbjct: 245 DMYVKMGRVDIASVI--FEKMPDS--DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLV 300

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+  +L  +L AC+  G   LG +IH ++     N   D +I   L+DMY K   +  A 
Sbjct: 301 PNVFMLSSILKACAGAGAFDLGRQIHGFMIKA--NADSDDYIGVGLVDMYAKNHFLDDAM 358

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVFD M  ++++ WN++I+G +H G+  EA  IF  ++  GL  +  TL  VL S A++ 
Sbjct: 359 KVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLE 418

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
                + VH   +K     D  + N L+D Y KC  +  A  VF      D+ + T+MI 
Sbjct: 419 AASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMIT 478

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
            L+       A+ +F EM + G+EPD      +L+AC+     E+G +     + +   Q
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH---AHLIKRQ 535

Query: 460 PQTEHYG--CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
             ++ +    +V  + + G I +A     S+P       W A++G    H   + A   +
Sbjct: 536 FMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRA---L 591

Query: 518 ENLVRFEPEG-DGAYILMTNIYSSKNRW---KEALKLRKKMKE 556
           E   R   EG +  +I MT++  + N      EA +    MKE
Sbjct: 592 ELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 181/376 (48%), Gaps = 14/376 (3%)

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
           +Q+L  G  +HA  +K+  L+++   N L+  Y+ C       ++F     P      VS
Sbjct: 17  AQALLPGAHLHANLLKSGFLASLR--NHLISFYSKCRRPCCARRVFDEIPDPCH----VS 70

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W++L+ AY     P  AI +F  M    +  +   L +VL     + D  LG ++H    
Sbjct: 71  WSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAM 127

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM-PVKNVVSWNSMIAGLTHRGQFKE 308
              F    DVF+ NAL+ MY   G +  AR+VFDE    +N VSWN +++      Q  +
Sbjct: 128 ATGFG--SDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGD 185

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A+ +F  M   G++P +F   CV+N+C     ++ G+ VH  + +     D F  NALVD
Sbjct: 186 AIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVD 245

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           MY K GR+D A  +F  M   DV S+ A+I G  ++G   +A+++  +M   G+ P+   
Sbjct: 246 MYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFM 305

Query: 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
              +L AC+ AG  + G +    M +           G +VD++ +   + +A+ +   M
Sbjct: 306 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDAMKVFDWM 364

Query: 489 PLVPDAFVWGALLGAC 504
               D  +W AL+  C
Sbjct: 365 SH-RDLILWNALISGC 379


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 207/583 (35%), Positives = 320/583 (54%), Gaps = 13/583 (2%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQ--VYL 85
           + RLE  + VG L   H+ +    S       + D     +R      +    P+    L
Sbjct: 123 ASRLEDER-VGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVL 181

Query: 86  YNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I   S  +  E +I ++ +ML  GL  ++ TL  VL A  + Q  R+G  +   + 
Sbjct: 182 WNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLAS 241

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K  L S+VYV   L+ LY+ CG  K+      F Q  Q   DL+S+  +I  Y   ++ T
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCG--KSCKGRILFDQIDQP--DLISYNAMISGYT-FNHET 296

Query: 205 EAILSFF-DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
           E+ ++ F ++  +  R +   LV ++        L L   I          L P V    
Sbjct: 297 ESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSV--ST 354

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL  +Y +   +  AR++FDE P K++ SWN+MI+G T  G    A+ +F+ M    L P
Sbjct: 355 ALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSP 413

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           +  T+  +L++CA +G L +GKWVH  +    + ++ ++  ALVDMYAKCG I +A  +F
Sbjct: 414 NPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLF 473

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             M  ++V ++ AMI G  +HG   +AL +F EM Q GI P  VTF+ +L ACSH+GLV 
Sbjct: 474 DLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVS 533

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG + F  M+  Y  QP +EHY CMVD+ GRAG +  AL+ I+ MPL P   VWGALLGA
Sbjct: 534 EGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C IH   E+A +  + L + +PE  G Y+L++NIYS+   + +A  +R+ +K+RK+ KTP
Sbjct: 594 CMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTP 653

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           GC+L+E+  + Y F  GD+SHP+   I+++L+++  + +  GY
Sbjct: 654 GCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGY 696



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 224/484 (46%), Gaps = 15/484 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQI--LYDKIISLSRGNEIENL--SLQNPQVYLY 86
           L ++ ++ QL Q  A +I  G     + I  L  K   L     +  L   +  P ++L+
Sbjct: 21  LNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLF 80

Query: 87  NFIIQCLS-NANPLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           N +I+  S N  P  +I LY  +  K  L P+ +T  + + A  + +  RVG  +HA+S+
Sbjct: 81  NVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSI 140

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
              + SN++V + ++ LY      +   K+F        +RD V W T+I  + +  Y  
Sbjct: 141 VDGVASNLFVGSAIVDLYFKFTRAELARKVFDV----MPERDTVLWNTMISGFSRNSYFE 196

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           ++I  F DM    L  D   L  VL+A ++L +  LG+ I    +     L  DV++   
Sbjct: 197 DSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKK--GLHSDVYVLTG 254

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LI +Y KCG     R +FD++   +++S+N+MI+G T   + + A+ +FR +   G + +
Sbjct: 255 LISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVN 314

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             TLV ++        L+L + +     K  I     +  AL  +Y +   +  A  +F 
Sbjct: 315 SSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFD 374

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
               + + S+ AMI G   +G   +A+ +F EM    + P+ VT   +LSAC+  G +  
Sbjct: 375 ESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSI 433

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G K    + +   L+        +VD++ + G I EA  L   M +  +   W A++   
Sbjct: 434 G-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGY 491

Query: 505 KIHA 508
            +H 
Sbjct: 492 GLHG 495


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 204/580 (35%), Positives = 322/580 (55%), Gaps = 16/580 (2%)

Query: 37  VGQLKQFHAFIIKTGSPQH---QTQI--LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQ 91
           +G  +Q HA  IK+ +  H   Q  +  +Y K  S+  G  +    +++  ++ +  II 
Sbjct: 162 LGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFE-RIRDKDLFSWGSIIA 220

Query: 92  CLSN-ANPLEAIALYREMLIKGLL-PNTYTLPYVLKACWQS-QSLRVGQQVHAYSMKTAL 148
            L+     ++A+ ++REM+ +G+  PN +    V +AC     SL  G+Q+H   +K  L
Sbjct: 221 GLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYKL 280

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             N Y   +L  +YA C  + +  K+F+  + P    DLVSW +LI A+      +EA++
Sbjct: 281 DRNSYAGCSLGDMYARCNKLDSAMKVFYRIESP----DLVSWNSLINAFSADGLLSEAMV 336

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F +M  ++L+PDG+ ++ +L AC     L  G  IH Y+      L  DV + N+LI M
Sbjct: 337 LFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLV--KLGLGGDVMVCNSLISM 394

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y +C + PSA  VF E   ++VV+WNS++         ++   +FR +       D  +L
Sbjct: 395 YTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISL 454

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             VL++ A +G+ E+ K VH Y  K  + +D  + NAL+D YAKCG +D A  +F  M  
Sbjct: 455 NNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGSLDDANKLFEIMGT 514

Query: 389 -RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            RDV+S++++IVG A  G A +ALD+F+ M  +G++P+ VTFVGVL ACS  GLV+EGC 
Sbjct: 515 GRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIACSRVGLVDEGCY 574

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           ++  M   Y + P  EH  C++DL  RAG + EA   +  MP  PD  +W  LL A + H
Sbjct: 575 YYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIMWNTLLAASRTH 634

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
             VE+ +   E ++  +P    AY+L+ NIY+S   W E  +L+K M+   V+K+PG S 
Sbjct: 635 NDVEMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDMRSSGVQKSPGKSW 694

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +++ GE   F   D+SHP++ E+Y +LD I  +    GYI
Sbjct: 695 IKLKGELKVFIVEDRSHPESDEMYTMLDLIGFEMVKAGYI 734



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 191/394 (48%), Gaps = 19/394 (4%)

Query: 127 CWQSQSLRVGQQVHAYSMKTA-----LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           C + +S   G+ VH + + ++     L  N  + N L+ +Y  C    +   +F      
Sbjct: 50  CSRLRSFPQGRLVHRHLLASSAGAAYLARNTILSNHLITMYGRCAAPDSARMVFD----G 105

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
              R+ VSW  +I A+ +     +A+  F  M +    PD   L   + AC++LGDL LG
Sbjct: 106 MLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLG 165

Query: 242 IKIHRYI--TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            ++H     +DN  +L     + NAL+ MY K G++     +F+ +  K++ SW S+IAG
Sbjct: 166 RQVHAQAIKSDNGGHL----IVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSIIAG 221

Query: 300 LTHRGQFKEALDIFRRMQGLGL-KPDDFTLVCVLNSCA-NIGWLELGKWVHTYLDKNHIN 357
           L  +G+  +AL IFR M   G+  P++F    V  +C+  I  LE G+ +H    K  ++
Sbjct: 222 LAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYKLD 281

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            + + G +L DMYA+C ++D A  VF  ++  D+ S+ ++I   +  G   +A+ +FSEM
Sbjct: 282 RNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLFSEM 341

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
               ++PD +T + +L AC     + +G      + ++  L         ++ ++ R   
Sbjct: 342 RYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVKL-GLGGDVMVCNSLISMYTRCLD 400

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
              A+D+        D   W ++L AC  H  +E
Sbjct: 401 FPSAMDVFHETN-DRDVVTWNSILTACVQHRHME 433



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 186/409 (45%), Gaps = 9/409 (2%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N+   +A+ L+  ML  G  P+ + L   ++AC +   L +G+QVHA ++K+    ++ V
Sbjct: 124 NSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIV 183

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ +Y+  G +     LF   +     +DL SW ++I    +     +A+  F +M 
Sbjct: 184 QNALVTMYSKSGSVGDGFALFERIR----DKDLFSWGSIIAGLAQQGREMDALHIFREMI 239

Query: 215 QANL-RPDGMILVIVLSACS-KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
              +  P+      V  ACS  +  L  G +IH       + L  + +   +L DMY +C
Sbjct: 240 AEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCV--KYKLDRNSYAGCSLGDMYARC 297

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
             + SA KVF  +   ++VSWNS+I   +  G   EA+ +F  M+   LKPD  T++ +L
Sbjct: 298 NKLDSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALL 357

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +C     L  G+ +H+YL K  +  D  + N+L+ MY +C     A  VF     RDV 
Sbjct: 358 CACVGCDALRQGRSIHSYLVKLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVV 417

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           ++ +++     H        +F  +       D ++   VLSA +  G  E   K     
Sbjct: 418 TWNSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVLSASAELGYFEMA-KQVHAY 476

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           +    L         ++D + + G + +A  L + M    D F W +L+
Sbjct: 477 AFKVGLVSDAILSNALIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLI 525



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 153/335 (45%), Gaps = 38/335 (11%)

Query: 232 CSKLGDLSLGIKIHRYITDNHFN---LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           CS+L     G  +HR++  +      L+ +  + N LI MY +C    SAR VFD M  +
Sbjct: 50  CSRLRSFPQGRLVHRHLLASSAGAAYLARNTILSNHLITMYGRCAAPDSARMVFDGMLDR 109

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           N VSW ++IA      +  +A+ +F  M  LG  PD+F L   + +CA +G L LG+ VH
Sbjct: 110 NPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQVH 169

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
               K+       + NALV MY+K G +   F +F  ++ +D++S+ ++I GLA  G+  
Sbjct: 170 AQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSIIAGLAQQGREM 229

Query: 409 KALDIFSEMSQVGI-EPDEVTFVGVLSACS------------HAGLVE--------EGCK 447
            AL IF EM   G+  P+E  F  V  ACS            H   V+         GC 
Sbjct: 230 DALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYKLDRNSYAGCS 289

Query: 448 --------HFLD--MSRVYNLQ-PQTEHYGCMVDLFGRAGLIREALDLIKSM---PLVPD 493
                   + LD  M   Y ++ P    +  +++ F   GL+ EA+ L   M    L PD
Sbjct: 290 LGDMYARCNKLDSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLKPD 349

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
                ALL AC     +     +   LV+    GD
Sbjct: 350 GITVMALLCACVGCDALRQGRSIHSYLVKLGLGGD 384


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 208/587 (35%), Positives = 333/587 (56%), Gaps = 18/587 (3%)

Query: 31  LESSKSVGQLK---QFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIEN-----LSLQNP 81
           L +  SVG L    Q H+  IK G       IL   ++ L S+  ++E      L  +  
Sbjct: 369 LSACASVGALHKGMQLHSHAIKAGMSA--DIILEGSLLDLYSKCADVETAHKFFLXTETE 426

Query: 82  QVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            + L+N ++      + L ++  ++R+M ++G++PN +T P +L+ C    +L +G+Q+H
Sbjct: 427 NIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIH 486

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            + +KT    NVYV + L+ +YA  G +    ++   R+ P+   D+VSWT +I  YV+ 
Sbjct: 487 THVIKTGFQLNVYVCSVLIDMYAKYGQLALALRIL--RRLPE--DDVVSWTAMIAGYVQH 542

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           D  +EA+  F +M    ++ D +     +SAC+ +  L  G +IH       F    D+ 
Sbjct: 543 DMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFG--ADLS 600

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           I+NALI +Y +CG I  A   F+++  KN +SWNS+++GL   G F+EAL +F RM    
Sbjct: 601 INNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTE 660

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
            + + FT    +++ A++  ++ G+ +H+ + K   +++  + N+L+ +YAK G I  A+
Sbjct: 661 AEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAW 720

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
             F  M  R+V S+ AMI G + HG   +AL +F EM   GI P+ VTFVGVLSACSH G
Sbjct: 721 REFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIG 780

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LV+EG  +F  M ++++L P++EHY C+VDL GRAG +  A++ IK MP+  DA +W  L
Sbjct: 781 LVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTL 840

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           L AC IH  +E+ E    +L+  EPE    Y+L++NIY+   +W      RK MK+  VK
Sbjct: 841 LSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVK 900

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K PG S +EV    + F  GDK HP T +IY+ +  +  ++   GY+
Sbjct: 901 KEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYV 947



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 219/431 (50%), Gaps = 20/431 (4%)

Query: 80  NPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ-SLRVGQ 137
           N  V+ +N +I   ++  +  +   L+R ML +G+ PN YT   VLKAC     +    +
Sbjct: 121 NRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVK 180

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           QVH+ +      S+  V N L+ LY+  G I++  K+F+        +D+V+W  +I   
Sbjct: 181 QVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN----CICMKDIVTWVAMISGL 236

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            +     EAIL F DM  + + P   +L  VLSA +K+    LG ++H  +    F+   
Sbjct: 237 SQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH--S 294

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           + ++ N L+ +Y +   + SA ++F  M  ++ VS+NS+I+GL  +G    AL++F +MQ
Sbjct: 295 ETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQ 354

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              LKPD  T+  +L++CA++G L  G  +H++  K  ++ D  +  +L+D+Y+KC  ++
Sbjct: 355 RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVE 414

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F   +  ++  +  M+V          + +IF +M   G+ P++ T+  +L  C+
Sbjct: 415 TAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCT 474

Query: 438 HAG---LVEEGCKHFLDMSRVYNLQPQTEHYGC--MVDLFGRAGLIREALDLIKSMPLVP 492
             G   L E+   H +      N+      Y C  ++D++ + G +  AL +++ +P   
Sbjct: 475 SLGALYLGEQIHTHVIKTGFQLNV------YVCSVLIDMYAKYGQLALALRILRRLP-ED 527

Query: 493 DAFVWGALLGA 503
           D   W A++  
Sbjct: 528 DVVSWTAMIAG 538



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 236/495 (47%), Gaps = 45/495 (9%)

Query: 102 IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRL 161
           I L   M  +G+  N     ++L+ C  S SL    ++H    K+       + ++L+  
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 162 YAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221
           Y   G      K+F       + R + SW  +I  +V      +    F  M    + P+
Sbjct: 103 YFRHGDQHGAVKVFD----ENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPN 158

Query: 222 GMILVIVLSACSKLGDLSLGI--KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           G     VL AC   GD++     ++H       F+ SP   + N LID+Y K G I SA+
Sbjct: 159 GYTFAGVLKACVG-GDIAFNYVKQVHSRTFYYGFDSSP--LVANLLIDLYSKNGYIESAK 215

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVF+ + +K++V+W +MI+GL+  G  +EA+ +F  M    + P  + L  VL++   I 
Sbjct: 216 KVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQ 275

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
             ELG+ +H  + K   +++ ++ N LV +Y++  ++  A  +F +M  RD  SY ++I 
Sbjct: 276 LFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLIS 335

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK------------ 447
           GL   G + +AL++F++M +  ++PD +T   +LSAC+  G + +G +            
Sbjct: 336 GLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSA 395

Query: 448 ------HFLDM---------SRVYNLQPQTEH---YGCMVDLFGRAGLIREALDLIKSMP 489
                   LD+         +  + L  +TE+   +  M+  +G+   + ++ ++ + M 
Sbjct: 396 DIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQ 455

Query: 490 ---LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI--LMTNIYSSKNRW 544
              ++P+ F + ++L  C     + L E +  ++++   + +  Y+  ++ ++Y+   + 
Sbjct: 456 MEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLN-VYVCSVLIDMYAKYGQL 514

Query: 545 KEALKLRKKMKERKV 559
             AL++ +++ E  V
Sbjct: 515 ALALRILRRLPEDDV 529


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 190/541 (35%), Positives = 303/541 (56%), Gaps = 39/541 (7%)

Query: 100 EAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           EA+ LY +M  + G+ P+ +T   +L  C   ++   G+Q+HA+ ++  +  N+ V   L
Sbjct: 461 EALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETEL 520

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y+ CG +    ++F+      A+R+  SW ++I+ Y +     EA+  F  M    +
Sbjct: 521 VHMYSECGRLNYAKEIFN----RMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGI 576

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           +PD   L  +LS+C  L D   G ++H +I  N   +  +  +   L+DMY KCG++  A
Sbjct: 577 KPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN--TMEEEGILQVVLVDMYAKCGSMDYA 634

Query: 279 RKV-------------------------------FDEMPVKNVVSWNSMIAGLTHRGQFK 307
            KV                               FD+M  +N   WNS++AG  ++G  K
Sbjct: 635 WKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKK 694

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL-DKNHINTDGFIGNAL 366
           E+ + F  M    ++ D  T+V ++N C+++  LE G  +H+ +  K  +N    +  AL
Sbjct: 695 ESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETAL 754

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           VDMY+KCG I +A  VF +M  +++ S+ AMI G + HG + +AL ++ EM + G+ P+E
Sbjct: 755 VDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNE 814

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           VTF+ +LSACSH GLVEEG + F  M   YN++ + EHY CMVDL GRAG + +A + ++
Sbjct: 815 VTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVE 874

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546
            MP+ P+   WGALLGAC++H  +++  +  + L   +P+  G Y++M+NIY++  RWKE
Sbjct: 875 KMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKE 934

Query: 547 ALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
              +R+ MK + VKK PG S +E+  E   F  G K+HPKT EIY  L  +  QSK  GY
Sbjct: 935 VEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGY 994

Query: 607 I 607
           I
Sbjct: 995 I 995



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 148/497 (29%), Positives = 239/497 (48%), Gaps = 43/497 (8%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           +E + LY  M   G   + +T P V+KAC   + +   +Q+ +  +K  L  N++V   L
Sbjct: 157 MEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGAL 216

Query: 159 MRLYAVCGLIK-AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           +  YA  G +  AV  L            +V+W  +I  YVK+    EA   F  M +  
Sbjct: 217 VDGYARFGWMDDAVTSLDEIEG-----TSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIG 271

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           + PD       L  C  L     G ++H  +    F    D F+ NALIDMY KC +  S
Sbjct: 272 VCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGF--KGDTFVGNALIDMYAKCDDEES 329

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
             KVFDEM  +N V+WNS+I+     G F +AL +F RMQ  G K + F L  +L + A 
Sbjct: 330 CLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAG 389

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +  +  G+ +H +L +N +N+D  +G+ALVDMY+KCG +++A  VFRS+  R+  SY A+
Sbjct: 390 LADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNAL 449

Query: 398 IVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACS-----------HAGLVEEG 445
           + G    GKA +AL+++ +M S+ GI+PD+ TF  +L+ C+           HA L+   
Sbjct: 450 LAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRAN 509

Query: 446 -----------------CKHFLDMSRVYNLQPQTEHYG--CMVDLFGRAGLIREALDLIK 486
                            C        ++N   +   Y    M++ + + G  +EAL L K
Sbjct: 510 ITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFK 569

Query: 487 SMPL---VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY-ILMTNIYSSKN 542
            M L    PD F   ++L +C   +  +    +   +VR   E +G   +++ ++Y+   
Sbjct: 570 QMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCG 629

Query: 543 RWKEALKLRKKMKERKV 559
               A K+  +  ++ V
Sbjct: 630 SMDYAWKVYDQTIKKDV 646



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 186/400 (46%), Gaps = 15/400 (3%)

Query: 120 LPY--VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV---HKL 174
           LPY  +++ C  S S + G+ +H   +      + Y+   ++ LYA  G +  +    KL
Sbjct: 72  LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKL 131

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F        +R+L +W T+I AY ++D   E +  +  M  +    D      V+ AC  
Sbjct: 132 FE----EMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIA 187

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           + D+    ++   +     N   ++F+  AL+D Y + G +  A    DE+   +VV+WN
Sbjct: 188 MEDMGGVRQLQSSVVKAGLNC--NLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWN 245

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           ++IAG      ++EA  IF RM  +G+ PD+FT    L  C  +   + GK VH+ L   
Sbjct: 246 AVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIAC 305

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
               D F+GNAL+DMYAKC   +    VF  M  R+  ++ ++I   A  G    AL +F
Sbjct: 306 GFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLF 365

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG-CMVDLFG 473
             M + G + +      +L A   AGL + G    L    V NL       G  +VD++ 
Sbjct: 366 LRMQESGYKSNRFNLGSILMAS--AGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYS 423

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           + G++ EA  + +S+ L  +   + ALL       K E A
Sbjct: 424 KCGMVEEAHQVFRSL-LERNEVSYNALLAGYVQEGKAEEA 462


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 207/579 (35%), Positives = 308/579 (53%), Gaps = 11/579 (1%)

Query: 34  SKSVGQLKQFHAFIIKTGSPQH--QTQILYDKIISLSRGNEIENL--SLQNPQVYLYNFI 89
           S+++   +Q HA +++ G  +       L D  + + R +    +   + +  V  +N +
Sbjct: 122 SRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNAL 181

Query: 90  IQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I  C+ N +   AI L  +M   GL+PN + L  +LKAC  + +  +G+Q+H + +K   
Sbjct: 182 ISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANA 241

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            S+ Y+   L+ +YA    +    K+F +  H    RDL+ W  LI          EA  
Sbjct: 242 DSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSH----RDLILWNALISGCSHGGRHDEAFS 297

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F+ + +  L  +   L  VL + + L   S   ++H       F    D  + N LID 
Sbjct: 298 IFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIF--DAHVVNGLIDS 355

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KC  +  A +VF+E    ++++  SMI  L+     + A+ +F  M   GL+PD F L
Sbjct: 356 YWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVL 415

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             +LN+CA++   E GK VH +L K    +D F GNALV  YAKCG I+ A   F S+  
Sbjct: 416 SSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE 475

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           R V S++AMI GLA HG   +AL++F  M   GI P+ +T   VL AC+HAGLV+E  ++
Sbjct: 476 RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRY 535

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M  ++ +    EHY CM+DL GRAG + +A++L+ SMP   +A VWGALLGA ++H 
Sbjct: 536 FNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHK 595

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
             EL ++  E L   EPE  G ++L+ N Y+S   W E  K+RK MK+  +KK P  S V
Sbjct: 596 DPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWV 655

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           EV  + + F  GDKSHP T EIY  LDE+       GYI
Sbjct: 656 EVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYI 694



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 221/449 (49%), Gaps = 43/449 (9%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           M  +G+  N + LP VLK    +Q   +G QVHA +M T   S+V+V N L+ +Y   G 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPDAQ---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           +    ++F       ++R+ VSW  L+ AYVK D   +AI  F +M  + ++P       
Sbjct: 58  MDDARRVF---DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSC 114

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           V++AC+   ++  G ++H  +         DVF  NAL+DMY+K G +  A  +F++MP 
Sbjct: 115 VVNACTGSRNIDAGRQVHAMVV--RMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPD 172

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
            +VVSWN++I+G    G    A+++  +M+  GL P+ F L  +L +CA  G  +LG+ +
Sbjct: 173 SDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQI 232

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H ++ K + ++D +IG  LVDMYAK   +D A  VF  M  RD+  + A+I G +  G+ 
Sbjct: 233 HGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRH 292

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HA---------------GL 441
            +A  IF  + + G+  +  T   VL + +           HA               GL
Sbjct: 293 DEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGL 352

Query: 442 VEE--GCKHFLDMSRVY------NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           ++    C    D  RV+      ++   T     +       G I+  +++++   L PD
Sbjct: 353 IDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRK-GLEPD 411

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVR 522
            FV  +LL AC   +  E  + V  +L++
Sbjct: 412 PFVLSSLLNACASLSAYEQGKQVHAHLIK 440



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 217/463 (46%), Gaps = 19/463 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI ++ EM+  G+ P  +    V+ AC  S+++  G+QVHA  ++     +V+  N L+
Sbjct: 92  DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALV 151

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y   G +     +  F + P +  D+VSW  LI   V   +   AI     M  + L 
Sbjct: 152 DMYVKMGRVDIASVI--FEKMPDS--DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLV 207

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+  +L  +L AC+  G   LG +IH ++     N   D +I   L+DMY K   +  A 
Sbjct: 208 PNVFMLSSILKACAGAGAFDLGRQIHGFMIKA--NADSDDYIGVGLVDMYAKNHFLDDAM 265

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVFD M  ++++ WN++I+G +H G+  EA  IF  ++  GL  +  TL  VL S A++ 
Sbjct: 266 KVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLE 325

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
                + VH   +K     D  + N L+D Y KC  +  A  VF      D+ + T+MI 
Sbjct: 326 AASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMIT 385

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
            L+       A+ +F EM + G+EPD      +L+AC+     E+G +     + +   Q
Sbjct: 386 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH---AHLIKRQ 442

Query: 460 PQTEHYG--CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
             ++ +    +V  + + G I +A     S+P       W A++G    H   + A   +
Sbjct: 443 FMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRA---L 498

Query: 518 ENLVRFEPEG-DGAYILMTNIYSSKNRW---KEALKLRKKMKE 556
           E   R   EG +  +I MT++  + N      EA +    MKE
Sbjct: 499 ELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 541


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 207/621 (33%), Positives = 342/621 (55%), Gaps = 25/621 (4%)

Query: 3   SPLTVASGSRYNDINTFQQ-LSLLHQSPRLESS---KSVGQLKQFHAFIIKTG---SPQH 55
           SPL     S    I +FQQ  +L      L++S   K++ + K+ H++++  G   SP  
Sbjct: 15  SPLFFNFSSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLS 74

Query: 56  QTQI--LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKG 112
            T +  +Y K   ++    I +       V+ +N II   ++N  P E    Y++M  +G
Sbjct: 75  ITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEG 134

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           ++P+ +T P  +KAC     ++   ++H    K  L  +V++ + L+  Y   GL++  H
Sbjct: 135 VIPDKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLME--H 189

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
               F + P   RD+V W  ++  Y ++      + +F  M   ++ P    +  VLS  
Sbjct: 190 AQVAFEELPI--RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVF 247

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           + +GDL+ G  IH +     ++    V + N+LIDMY KC  I  A ++F+ M  K++ S
Sbjct: 248 AVMGDLNNGRIIHGFAMKMGYD--SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFS 305

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WNS+++     G     L +  RM G G++PD  T+  VL +C+++  L  G+ +H Y+ 
Sbjct: 306 WNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMI 365

Query: 353 KNHINTDG------FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
            + +  DG       + NA++DMYAKCG +  A  VF  M  +DV S+  MI+G  +HG 
Sbjct: 366 VSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGY 425

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
             +AL++FS M +V ++PDEVTFVGVLSACSHAG V +G    + M   Y++ P  EHY 
Sbjct: 426 GNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYT 485

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           C++D+ GRAG + EA +L  +MP+  +  VW ALL AC++H    LAE+  + +   EPE
Sbjct: 486 CVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPE 545

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
             G+Y+LM+N+Y +  R++E L++R  M+++ V+KTPGCS +E+    + F   D++HP+
Sbjct: 546 HCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPE 605

Query: 587 TLEIYKLLDEIMHQSKNHGYI 607
              IY  L+ +  + + HGY+
Sbjct: 606 AHSIYAGLNSLTARLREHGYV 626


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 183/522 (35%), Positives = 306/522 (58%), Gaps = 37/522 (7%)

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY------------------------ 153
           +T+P + K+C    ++ VG+QVH+  ++    S+V+                        
Sbjct: 97  FTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDG 156

Query: 154 -------VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
                   +N L+  Y+  G + A  +LF         R +VSW  +I  Y +     + 
Sbjct: 157 ILVKDTIAYNCLISAYSRSGEVLAARELFD----KMRDRSIVSWNAMISCYAQNGDYHKG 212

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
            + F  M      P+ + L  VLS C+KLGDL +G++I + + DN  NL  ++ +  A++
Sbjct: 213 WIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKK-LNDNK-NLGSNMIVSTAML 270

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           +MY+KCG +   R VFD M  ++VV+W++MIAG    G+  EAL++F  M+   +KP+D 
Sbjct: 271 EMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDV 330

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           TLV VL++CA +G +E G+ + +Y++   + ++ ++ +AL+ MY+KCG I +A  +F  +
Sbjct: 331 TLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKL 390

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             RD  ++ +MI+GLAI+G A  A+ +++ M ++ ++P+ +TFVG+++AC+HAG VE G 
Sbjct: 391 PQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGL 450

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           + F  M   +N+ P  EH+ C+VDLF R+G + +A + I  M + P+  +WG LL A +I
Sbjct: 451 EFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRI 510

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H  VELAE+  + L+  EP+  G Y++++NIY+S  RW+EALK+RK MK+++V+K    S
Sbjct: 511 HLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYS 570

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
            VEV    ++F  GD SHP++ E+Y  +D +   S   GY L
Sbjct: 571 WVEVEDRVHKFLVGDTSHPRSDEVYSTIDGLALLSTWVGYEL 612



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 191/412 (46%), Gaps = 70/412 (16%)

Query: 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
             I+   ++F    HP    D     + I AY ++    EA+ +F  M Q N+R     +
Sbjct: 44  SFIQYARQVFDQIPHP----DQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTI 99

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK-------------- 271
             +  +C+ L  + +G ++H  +    F+ S  VF  NALI+ Y K              
Sbjct: 100 PPIFKSCASLLAIDVGKQVHSLVIRYGFHSS--VFCQNALINFYAKINDLGSAELIFDGI 157

Query: 272 -----------------CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
                             G + +AR++FD+M  +++VSWN+MI+     G + +   IF+
Sbjct: 158 LVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQ 217

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           RMQ    +P++ TL  VL+ CA +G LE+G  +    D  ++ ++  +  A+++MY KCG
Sbjct: 218 RMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCG 277

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            +D    VF  M  RDV +++AMI G A +G++ +AL++F  M    I+P++VT V VLS
Sbjct: 278 AVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLS 337

Query: 435 ACSHAGLVEEG----------------------------CKHFLDMSRVYNLQPQTEH-- 464
           AC+  G VE G                            C + +   ++++  PQ ++  
Sbjct: 338 ACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVT 397

Query: 465 YGCMVDLFGRAGLIREALDL---IKSMPLVPDAFVWGALLGACKIHAKVELA 513
           +  M+      G   +A+ L   +K + + P+   +  L+ AC     VEL 
Sbjct: 398 WNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELG 449



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 207/419 (49%), Gaps = 56/419 (13%)

Query: 78  LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +++  +  +N +I C + N +  +   +++ M  +   PN  TL  VL  C +   L +G
Sbjct: 188 MRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMG 247

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            ++   +    L SN+ V   ++ +Y  CG +     +F       A+RD+V+W+ +I  
Sbjct: 248 LRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDH----MARRDVVTWSAMIAG 303

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y +     EA+  F +M  A ++P+ + LV VLSAC++LG +  G +I  Y+      L 
Sbjct: 304 YAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESR--GLI 361

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            +V++ +AL+ MY KCGNI  AR++FD++P ++ V+WNSMI GL   G  ++A+ ++ RM
Sbjct: 362 SNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRM 421

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH---INTDGFIGNALVDMYAKC 373
           + + +KP++ T V ++ +C + G +ELG      +  +H    N + F    +VD++ + 
Sbjct: 422 KEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFA--CIVDLFCRS 479

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           GR+                                  +D +  + ++ +EP+ V +  +L
Sbjct: 480 GRL----------------------------------IDAYEFICRMEVEPNVVIWGTLL 505

Query: 434 SACS---HAGLVEEGCKHFLDMSRVYNLQPQTE-HYGCMVDLFGRAGLIREALDLIKSM 488
           SA     +  L E   K  L+      L+P    +Y  + +++  AG  +EAL + K M
Sbjct: 506 SASRIHLNVELAELAGKKLLE------LEPDNSGNYVILSNIYASAGRWQEALKVRKLM 558



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 39/309 (12%)

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           +I   I   + +L+P +FI        L    I  AR+VFD++P  +     S I   + 
Sbjct: 20  QIQALIIIKYLSLTP-LFIRR-----LLNASFIQYARQVFDQIPHPDQGVHCSFITAYSR 73

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
                EAL  F  M    ++   FT+  +  SCA++  +++GK VH+ + +   ++  F 
Sbjct: 74  LSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFC 133

Query: 363 GNALVDMYAK-------------------------------CGRIDQAFGVFRSMKCRDV 391
            NAL++ YAK                                G +  A  +F  M+ R +
Sbjct: 134 QNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSI 193

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            S+ AMI   A +G   K   IF  M     EP+E+T   VLS C+  G +E G +    
Sbjct: 194 VSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLR-IKK 252

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           ++   NL         M++++ + G + +   +   M    D   W A++     + +  
Sbjct: 253 LNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMAR-RDVVTWSAMIAGYAQNGRSN 311

Query: 512 LAEIVMENL 520
            A  + EN+
Sbjct: 312 EALELFENM 320


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 204/612 (33%), Positives = 321/612 (52%), Gaps = 51/612 (8%)

Query: 33  SSKSVGQLKQFHAFIIK----TGSPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           S KS  Q +Q HA ++K    +         +Y  I  L     + N ++  P    +  
Sbjct: 18  SIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFN-TIHFPPALAWKS 76

Query: 89  IIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           +I+C  S+  P +++  +  ML  GL P+    P VLK+C     L +G+ +H Y ++  
Sbjct: 77  VIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVG 136

Query: 148 LLSNVYVFNTLMRLYAVCGLIK--------------------------------AVHKLF 175
           L  ++Y  N LM +Y+    ++                                +V K+F
Sbjct: 137 LDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIF 196

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
                   ++DLVSW T+I    +     E +    +M  ANL+PD   L  VL   ++ 
Sbjct: 197 EM----MPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAEN 252

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
            D+S G +IH         L  D+++ ++LIDMY KC  +  + +VF  +  ++ +SWNS
Sbjct: 253 VDISRGKEIHGCSIRQ--GLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNS 310

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           +IAG    G F E L  FR+M    +KP  ++   ++ +CA++  L LGK +H Y+ +N 
Sbjct: 311 IIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNG 370

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
            + + FI ++LVDMYAKCG I  A  +F  M+ RD+ S+TAMI+G A+HG+A  A+++F 
Sbjct: 371 FDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFE 430

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           +M   GI+        VL+ACSH GLV+E  K+F  M+R + + P  EHY  + DL GRA
Sbjct: 431 QMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRA 483

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
           G + EA D I  M + P   +W  LL AC++H  +++AE V   ++  +P   GAYIL+ 
Sbjct: 484 GRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLA 543

Query: 536 NIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           NIYS+  RWKEA K R  M+   ++KTP CS +EV  + Y F  GD+SHP   +I + ++
Sbjct: 544 NIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAME 603

Query: 596 EIMHQSKNHGYI 607
            ++   +  GY+
Sbjct: 604 VLVELMEKEGYV 615



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 212/453 (46%), Gaps = 54/453 (11%)

Query: 107 EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
           E L+K LL N    P  +K+  +SQ+    QQ+HA  +K    S   +   L  +Y+   
Sbjct: 6   EALVKALLRN----PLSIKS--RSQA----QQLHAQVLKFQASSLCNLSLLLS-IYSHIN 54

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
           L+    +LF+    P A    ++W ++I+ Y     P +++ SF  M  + L PD  +  
Sbjct: 55  LLHDSLRLFNTIHFPPA----LAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFP 110

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY-------------LKCG 273
            VL +C+ L DL+LG  +H YI      L  D++  NAL++MY             L  G
Sbjct: 111 SVLKSCALLMDLNLGESLHGYII--RVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 274 NI-------------------PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
            +                    S RK+F+ MP K++VSWN++IAG    G ++E L + R
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            M G  LKPD FTL  VL   A    +  GK +H    +  ++ D ++ ++L+DMYAKC 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           R+  +  VF  +  RD  S+ ++I G   +G   + L  F +M    I+P   +F  ++ 
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           AC+H   +  G +    ++R             +VD++ + G IR A  +   M L  D 
Sbjct: 349 ACAHLTTLHLGKQLHGYITR-NGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL-RDM 406

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
             W A++  C +H +   A   +E   + E EG
Sbjct: 407 VSWTAMIMGCALHGQ---APDAIELFEQMETEG 436


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 198/612 (32%), Positives = 339/612 (55%), Gaps = 44/612 (7%)

Query: 34  SKSVGQLKQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           S++ G   Q H  I+K G       Q+     Y +   L    ++ +   +   V   + 
Sbjct: 147 SRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSM 206

Query: 89  IIQCLSNANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           I          +A+ L+  M+  + + PN+ T+  V+ AC + + L  G++V+A+   + 
Sbjct: 207 ICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSG 266

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
           +  N  + + L+ +Y  C  I    +LF   ++  +  DL +   +   YV+     EA+
Sbjct: 267 IEVNDLMVSALVDMYMKCNAIDVAKRLFD--EYGASNLDLCN--AMASNYVRQGLTREAL 322

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F  M  + +RPD + ++  +S+CS+L ++  G   H Y+  N F    +  I NALID
Sbjct: 323 GVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDN--ICNALID 380

Query: 268 MYLKC-------------------------------GNIPSARKVFDEMPVKNVVSWNSM 296
           MY+KC                               G + +A + F+ MP KN+VSWN++
Sbjct: 381 MYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTI 440

Query: 297 IAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           I+GL     F+EA+++F  MQ   G+  D  T++ + ++C ++G L+L KW++ Y++KN 
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNG 500

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           I  D  +G  LVDM+++CG  + A  +F S+  RDV ++TA I  +A+ G A +A+++F 
Sbjct: 501 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFD 560

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           +M + G++PD V FVG L+ACSH GLV++G + F  M +++ + P+  HYGCMVDL GRA
Sbjct: 561 DMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRA 620

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
           GL+ EA+ LI+ MP+ P+  +W +LL AC++   VE+A    E +    PE  G+Y+L++
Sbjct: 621 GLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLS 680

Query: 536 NIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           N+Y+S  RW +  K+R  MKE+ ++K PG S +++ G+ +EF  GD+SHP+   I  +LD
Sbjct: 681 NVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLD 740

Query: 596 EIMHQSKNHGYI 607
           E+  ++ + G++
Sbjct: 741 EVSQRASHLGHV 752



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 165/585 (28%), Positives = 292/585 (49%), Gaps = 84/585 (14%)

Query: 3   SPLTVASGSRYNDINTFQQLSLLHQS-------PRLESSKSVGQLKQFHAFIIKTGSPQH 55
           SP+ +A+        T  + SLL+QS         L++ K++ +LK FH  + K G    
Sbjct: 11  SPMVLAT-------TTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDND 63

Query: 56  QTQILYDKII----------SLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIAL 104
            + I   K++          SLS   E+   S      ++YN +I+  +++    EAI L
Sbjct: 64  VSTIT--KLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILL 121

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           +  M+  G+ P+ YT P+ L AC +S++   G Q+H   +K     +++V N+L+  YA 
Sbjct: 122 FLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAE 181

Query: 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGM 223
           CG + +  K+F       ++R++VSWT++I  Y + D+  +A+  FF M +   + P+ +
Sbjct: 182 CGELDSARKVF----DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237

Query: 224 ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
            +V V+SAC+KL DL  G K++ +I ++   ++ D+ + +AL+DMY+KC  I  A+++FD
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVN-DLMV-SALVDMYMKCNAIDVAKRLFD 295

Query: 284 EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLEL 343
           E    N+   N+M +    +G  +EAL +F  M   G++PD  +++  ++SC+ +  +  
Sbjct: 296 EYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILW 355

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           GK  H Y+ +N   +   I NAL+DMY KC R D AF +F  M  + V ++ +++ G   
Sbjct: 356 GKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVE 415

Query: 404 HGK---AW----------------------------KALDIFSEM-SQVGIEPDEVTFVG 431
           +G+   AW                            +A+++F  M SQ G+  D VT + 
Sbjct: 416 NGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMS 475

Query: 432 VLSACSHAGLVEEGCKHFLDMSR-VY------NLQPQTEHYGCMVDLFGRAGLIREALDL 484
           + SAC H G         LD+++ +Y       +Q        +VD+F R G    A+ +
Sbjct: 476 IASACGHLGA--------LDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSI 527

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR--FEPEG 527
             S+    D   W A +GA  +    E A  + ++++    +P+G
Sbjct: 528 FNSLT-NRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 193/580 (33%), Positives = 316/580 (54%), Gaps = 54/580 (9%)

Query: 82  QVYLYNFIIQC-LSNANPLEAIALYREMLI------KGLLPNTYTLPYVLKACWQSQSLR 134
            V  +N I+   +  +NP  A+ L+ EM +           +  ++  +L AC   ++L 
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALP 276

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK------------------------- 169
             +++H+Y+++    ++ +V N L+  YA CG +                          
Sbjct: 277 QIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYT 336

Query: 170 ------AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM 223
                 A  +LF   +      D+++W+ +I  Y +     EA+ +F  M      P+ +
Sbjct: 337 QSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSV 396

Query: 224 ILVIVLSACSKLGDLSLGIKIHRY----------ITDNHFNLSPDVFIHNALIDMYLKCG 273
            ++ +LSAC+ LG LS G++IH Y                    D+ ++NALIDMY KC 
Sbjct: 397 TIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCR 456

Query: 274 NIPSARKVFDEMP--VKNVVSWNSMIAGLTHRGQFKEALDIFRRM--QGLGLKPDDFTLV 329
           +  +AR +FD +P   +NVV+W  MI G    G   +AL IF  M  +   + P+ +T+ 
Sbjct: 457 SFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTIS 516

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDG--FIGNALVDMYAKCGRIDQAFGVFRSMK 387
           C+L +CA++  L +GK +H Y+ ++H       F+ N L+DMY+KCG +D A  VF SM 
Sbjct: 517 CILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP 576

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            R+  S+T+M+ G  +HG+  +ALDIF +M + G  PD+++F+ +L ACSH+G+V++G  
Sbjct: 577 KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLN 636

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           +F  M R Y++    EHY C++DL  R G + +A   I+ MP+ P A +W ALL AC++H
Sbjct: 637 YFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVH 696

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
           + VELAE  +  LV  + E DG+Y L++NIY++  RWK+  ++R+ MK+  +KK PGCS 
Sbjct: 697 SNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSW 756

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           V+       F  GD+SHP + EIY LL+ ++ + K  GY+
Sbjct: 757 VQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYV 796



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 166/607 (27%), Positives = 277/607 (45%), Gaps = 94/607 (15%)

Query: 5   LTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGS------------ 52
           L+VAS   +      + +S  H +  L+  +SV  ++Q H  II  G             
Sbjct: 17  LSVASADCFG-----RDVSPTHFASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPL 71

Query: 53  ---PQHQ---TQILYDKIIS--LSRGNEIENLSL-----QNPQVYLYNFIIQCLSNANPL 99
              P H     + L   +++  L+ G   + LS+      +P V+    + + +   +  
Sbjct: 72  APLPSHSYVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLD 131

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
            AI +   ML  G  P+ +TLPY LKAC +  S   G+ +H         SNV+V N L+
Sbjct: 132 RAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALV 191

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC----- 214
            +Y+ CG ++    +F      +   D++SW +++ A+VK   P  A+  F +M      
Sbjct: 192 AMYSRCGSLEDASLVFD-EITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHE 250

Query: 215 -QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
              N R D + +V +L AC+ L  L    +IH Y   N      D F+ NALID Y KCG
Sbjct: 251 KATNERSDIISIVNILPACASLKALPQIKEIHSYAIRN--GTFADAFVCNALIDTYAKCG 308

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF--------------------------- 306
           ++  A KVF+ M  K+VVSWN+M+ G T  G F                           
Sbjct: 309 SMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIA 368

Query: 307 --------KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI-- 356
                   +EALD F++M   G +P+  T++ +L++CA++G L  G  +H Y  K  +  
Sbjct: 369 GYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLS 428

Query: 357 ----------NTDGFIGNALVDMYAKCGRIDQAFGVFRSM--KCRDVYSYTAMIVGLAIH 404
                       D  + NAL+DMY+KC     A  +F S+  + R+V ++T MI G A +
Sbjct: 429 LDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQY 488

Query: 405 GKAWKALDIFSEM--SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
           G +  AL IFSEM      + P+  T   +L AC+H   +  G +    ++R +  +P  
Sbjct: 489 GDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSV 548

Query: 463 EHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
                C++D++ + G +  A ++  SMP   +   W +++    +H + + A  + + + 
Sbjct: 549 YFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQ 607

Query: 522 R--FEPE 526
           +  F P+
Sbjct: 608 KAGFVPD 614


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 187/496 (37%), Positives = 289/496 (58%), Gaps = 12/496 (2%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           G+  +  T   ++K C    +++ G++VH +         ++V NTL+ +Y    L++  
Sbjct: 50  GVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEA 109

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
             LF        +R++VSWTT+I AY       +A+     M +  +RP+      VL A
Sbjct: 110 EDLFD----EMPERNVVSWTTMISAYSN-KLNDKALKCLILMFREGVRPNMFTYSSVLRA 164

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           C  L +L    ++H  I      L  DVF+ +ALID+Y K  ++ +A  VFDEMP +++V
Sbjct: 165 CDGLPNLR---QLHCGIIKT--GLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLV 219

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
            WNS+I G        EAL++F+RM+  G   D  TL  VL +C  +  LELG+ VH ++
Sbjct: 220 VWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHV 279

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            K   + D  + NAL+DMY KCG ++ A   F  M  +DV S++ M+ GLA +G + +AL
Sbjct: 280 LK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQAL 337

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
           ++F  M + G  P+ +T +GVL ACSHAGLVE+G  +F  M +++ + P  EHYGC++DL
Sbjct: 338 ELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDL 397

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
            GRAG + EA+ LI  M   PD+  W  LLGAC++H  V+LA    + ++  EPE  G Y
Sbjct: 398 LGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTY 457

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           IL++NIY++  RW++  ++RK M  R ++KTPGCS +EV  + + F  GD SHPK  EI 
Sbjct: 458 ILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIV 517

Query: 592 KLLDEIMHQSKNHGYI 607
           + L++++ +    GY+
Sbjct: 518 QRLNDLIERVMGVGYV 533



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 188/368 (51%), Gaps = 19/368 (5%)

Query: 72  EIENLSLQNPQ--VYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ 129
           E E+L  + P+  V  +  +I   SN    +A+     M  +G+ PN +T   VL+AC  
Sbjct: 108 EAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDG 167

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
             +LR   Q+H   +KT L S+V+V + L+ +Y+    +   + L  F + P   RDLV 
Sbjct: 168 LPNLR---QLHCGIIKTGLESDVFVRSALIDVYSKWSDLD--NALGVFDEMP--TRDLVV 220

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W ++I  + +     EA+  F  M +A    D   L  VL AC+ L  L LG ++H ++ 
Sbjct: 221 WNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHV- 279

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
                   D+ ++NALIDMY KCG++  A   F  M  K+V+SW++M+AGL   G  ++A
Sbjct: 280 ---LKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQA 336

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALV 367
           L++F  M+  G +P+  T++ VL +C++ G +E G W +    K     D    +   L+
Sbjct: 337 LELFESMKESGSRPNYITVLGVLFACSHAGLVEKG-WYYFRSMKKLFGVDPGREHYGCLI 395

Query: 368 DMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           D+  + GR+D+A  +   M+C  D  ++  ++    +H      L I++    + +EP++
Sbjct: 396 DLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNV--DLAIYAAKKIIELEPED 453

Query: 427 VTFVGVLS 434
                +LS
Sbjct: 454 AGTYILLS 461



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 163/343 (47%), Gaps = 21/343 (6%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQ 82
           S  L +   +  L+Q H  IIKTG  +    +    I   S+ ++++N       +    
Sbjct: 159 SSVLRACDGLPNLRQLHCGIIKTG-LESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRD 217

Query: 83  VYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           + ++N II   + N++  EA+ L++ M   G L +  TL  VL+AC     L +G+QVH 
Sbjct: 218 LVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHV 277

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           + +K     ++ + N L+ +Y  CG ++  +  F        ++D++SW+T++    +  
Sbjct: 278 HVLK--FDQDLILNNALIDMYCKCGSLEDANSAF----SRMVEKDVISWSTMVAGLAQNG 331

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           Y  +A+  F  M ++  RP+ + ++ VL ACS  G +  G    R +    F + P    
Sbjct: 332 YSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMK-KLFGVDPGREH 390

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMI-AGLTHRGQFKEALDIFRRMQGL 319
           +  LID+  + G +  A K+  EM  + + V+W +++ A   HR      L I+   + +
Sbjct: 391 YGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNV---DLAIYAAKKII 447

Query: 320 GLKPDDF-TLVCVLNSCANIG-WLELGKWVHTYLDKNHINTDG 360
            L+P+D  T + + N  AN   W ++ +   T  ++    T G
Sbjct: 448 ELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPG 490



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 32/241 (13%)

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G  P  R V D  P+ N        A   H+     A+     M+  G+  D  T   ++
Sbjct: 9   GMKPPLRYVADPSPLVN------EFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELI 62

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
             C+  G ++ GK VH ++         F+ N L++MY K   +++A  +F  M  R+V 
Sbjct: 63  KCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVV 122

Query: 393 SYTAMIVGLA--IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS--------HAGLV 442
           S+T MI   +  ++ KA K L +   M + G+ P+  T+  VL AC         H G++
Sbjct: 123 SWTTMISAYSNKLNDKALKCLIL---MFREGVRPNMFTYSSVLRACDGLPNLRQLHCGII 179

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           + G            L+        ++D++ +   +  AL +   MP   D  VW +++G
Sbjct: 180 KTG------------LESDVFVRSALIDVYSKWSDLDNALGVFDEMP-TRDLVVWNSIIG 226

Query: 503 A 503
            
Sbjct: 227 G 227


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 180/503 (35%), Positives = 300/503 (59%), Gaps = 46/503 (9%)

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC----GLIKAVHKLFHFRQHPQAQRDL 187
           S++  Q++HA  +KT L  +    +   R+ A C    G I   + +F   ++P    +L
Sbjct: 8   SMKDLQKIHAQLIKTGLAKDTIAAS---RVLAFCTSPAGDINYAYLVFTQIRNP----NL 60

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDM--CQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
             W T+I+ + +   P  AI  F DM       +P  +    V  A ++LG    G ++H
Sbjct: 61  FVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLH 120

Query: 246 RYITDNHFNLSPDVFIHNALIDMYL-------------------------------KCGN 274
             +      L  D FI N +++MY+                               KCG 
Sbjct: 121 GRVI--KLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGE 178

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I  +R++FD+M ++N VSWNSMI+G   +G+F EA+++F RMQ  G+KP +FT+V +LN+
Sbjct: 179 IDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNA 238

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA +G L  G+W+H Y+ KN+   +  +  A++DMY+KCG ID+A  VF+S   + +  +
Sbjct: 239 CACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCW 298

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            ++I+GLA+ G+  +A+ +FS++    ++PD V+F+GVL+AC+HAG+V+    +FL MS 
Sbjct: 299 NSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSE 358

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y ++P  +HY CMVD+ GRAGL+ EA +LIKSMP+ PDA +WG+LL +C+ +  +E+A+
Sbjct: 359 TYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAK 418

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
              + +   +P    ++IL++N+Y++ N ++EA++ R  +KE+++ K PGCSL+EV GE 
Sbjct: 419 QAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEV 478

Query: 575 YEFRKGDKSHPKTLEIYKLLDEI 597
           +EF  G + HP++ +IY  LD++
Sbjct: 479 HEFVAGGRLHPRSKDIYHALDDL 501



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 181/387 (46%), Gaps = 38/387 (9%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL-----QNPQVYLYNFII 90
           S+  L++ HA +IKTG  +             S   +I    L     +NP ++++N II
Sbjct: 8   SMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTII 67

Query: 91  QCLS-NANPLEAIALYREMLIKG--LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           +  S ++ P  AI+L+ +M+       P   T P V KA  Q      G Q+H   +K  
Sbjct: 68  RGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLG 127

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ---------------------------H 180
           L ++ ++ NT++ +Y  CG +    ++F                                
Sbjct: 128 LENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFD 187

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
               R+ VSW ++I  YV+     EA+  F  M +  ++P    +V +L+AC+ LG L  
Sbjct: 188 KMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQ 247

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G  IH YI  N+F L+  V    A+IDMY KCG+I  A +VF   P K +  WNS+I GL
Sbjct: 248 GEWIHDYIVKNNFALNSIVI--TAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGL 305

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTD 359
              G+  EA+ +F +++   LKPD  + + VL +C + G ++  K     + + + I   
Sbjct: 306 AMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPS 365

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSM 386
               + +VD+  + G +++A  + +SM
Sbjct: 366 IKHYSCMVDVLGRAGLLEEAEELIKSM 392



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
            EA+ L+  M  +G+ P+ +T+  +L AC    +LR G+ +H Y +K     N  V   +
Sbjct: 211 FEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAI 270

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y+ CG I    ++  F+  P  ++ L  W +LI          EA+  F  +  +NL
Sbjct: 271 IDMYSKCGSIDKALQV--FKSAP--KKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNL 326

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           +PD +  + VL+AC+  G +    K +  +    + + P +  ++ ++D+  + G +  A
Sbjct: 327 KPDHVSFIGVLTACNHAGMVDRA-KDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEA 385

Query: 279 RKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            ++   MPV  + + W S+++     G  + A    +R+  L
Sbjct: 386 EELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNEL 427


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 204/572 (35%), Positives = 313/572 (54%), Gaps = 68/572 (11%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI +  EM+ +G+ P+ +TL  VL +   ++ L  G++VH++ +K  L  NV V N+L+
Sbjct: 129 KAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLL 188

Query: 160 RLYAVCG------------LIK---------AVH--------KLFHFRQHPQAQRDLVSW 190
            +YA CG            ++K         A+H         +  F Q   A+RD+V+W
Sbjct: 189 NMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQ--MAERDIVTW 246

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
            ++I  Y +  Y   A+  F  M + + L PD   L  VLSAC+ L  L +G +IH +I 
Sbjct: 247 NSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIV 306

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARK----------------------------- 280
              F++S  V   NALI MY +CG + +AR+                             
Sbjct: 307 TTGFDISGIVL--NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364

Query: 281 ----VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
               +FD +  ++VV+W +MI G    G + EA+++FR M G   +P+ +TL  +L+  +
Sbjct: 365 EAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVAS 424

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-RDVYSYT 395
           ++  L  GK +H    K+       + NAL+ MYAK G I  A   F  ++C RD  S+T
Sbjct: 425 SLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWT 484

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI+ LA HG A +AL++F  M   G+ PD +T+VGV SAC+HAGLV +G ++F  M  V
Sbjct: 485 SMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDV 544

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
             + P   HY CMVDLFGRAGL++EA + I+ MP+ PD   WG+LL AC+++  ++L ++
Sbjct: 545 DKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKV 604

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             E L+  EPE  GAY  + N+YS+  +W+EA K+RK MK+ +VKK  G S +EV  + +
Sbjct: 605 AAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVH 664

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F   D  HP+  EIY  + +I  + K  GY+
Sbjct: 665 AFGVEDGIHPQKNEIYITMKKIWDEIKKMGYV 696



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 135/508 (26%), Positives = 209/508 (41%), Gaps = 132/508 (25%)

Query: 125 KACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-------- 176
           K+  +S      Q VH   +K+ L+ +VY+ N LM +Y+  G      KLF         
Sbjct: 22  KSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAF 81

Query: 177 ---------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
                                F + PQ  RD VSWTT+I  Y  +    +AI    +M +
Sbjct: 82  SWNTVLSAYAKRGDMDSSCEFFDRLPQ--RDSVSWTTMIVGYKNIGQYHKAIRIMGEMMR 139

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             + P    L  VL++ +    L  G K+H +I      L  +V + N+L++MY KCG+ 
Sbjct: 140 EGIEPSQFTLTNVLASVAATRCLETGKKVHSFIV--KLGLRGNVSVSNSLLNMYAKCGDP 197

Query: 276 PSARKVFDEMPVKNV-------------------------------VSWNSMIAGLTHRG 304
             A+ VFD M VK++                               V+WNSMI+G   RG
Sbjct: 198 MMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRG 257

Query: 305 QFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
               ALD+F +M +   L PD FTL  VL++CAN+  L +G+ +H+++     +  G + 
Sbjct: 258 YDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVL 317

Query: 364 NALVDMYAKCGRID---------------------------------QAFGVFRSMKCRD 390
           NAL+ MY++CG ++                                 +A  +F S+K RD
Sbjct: 318 NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRD 377

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HA 439
           V ++TAMIVG   HG   +A+++F  M      P+  T   +LS  S           H 
Sbjct: 378 VVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHG 437

Query: 440 GLVEEG-----------------CKHFLDMSRVYNL---QPQTEHYGCMVDLFGRAGLIR 479
             V+ G                        SR ++L   +  T  +  M+    + G   
Sbjct: 438 SAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE 497

Query: 480 EALDLIKSM---PLVPDAFVWGALLGAC 504
           EAL+L ++M    L PD   +  +  AC
Sbjct: 498 EALELFETMLMEGLRPDHITYVGVFSAC 525



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 157/332 (47%), Gaps = 44/332 (13%)

Query: 60  LYDKIISLSRGNEIENL--SLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPN 116
           L D  I L   NE +N+  SL++  V  +  +I          EAI L+R M+ +   PN
Sbjct: 353 LLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPN 412

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
           +YTL  +L       SL  G+Q+H  ++K+  + +V V N L+ +YA  G I +  + F 
Sbjct: 413 SYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFD 472

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
                + +RD VSWT++I A  +  +  EA+  F  M    LRPD +  V V SAC+  G
Sbjct: 473 L---IRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAG 529

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNS 295
            ++ G +    + D    + P +  +  ++D++ + G +  A++  ++MP++ +VV+W S
Sbjct: 530 LVNQGRQYFDMMKDVD-KIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGS 588

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           +++          A  +++ +    +  +   L+   NS A                   
Sbjct: 589 LLS----------ACRVYKNIDLGKVAAERLLLLEPENSGAY------------------ 620

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
                   +AL ++Y+ CG+ ++A  + +SMK
Sbjct: 621 --------SALANLYSACGKWEEAAKIRKSMK 644


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 215/624 (34%), Positives = 329/624 (52%), Gaps = 35/624 (5%)

Query: 10  GSRYNDINTFQQLSLLHQS--PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL 67
           G    ++  + QL   +QS  P+     SV  LK       K  S +H TQI + ++++ 
Sbjct: 68  GPMSREVAFWLQLFTSYQSGVPKFHQFSSVPDLKHLLNNAAKLKSLKHATQI-HSQLVTT 126

Query: 68  SRGNEIENLSL-----------------------QNPQVYLYNFIIQCLSNAN-PLEAIA 103
           +    + N++                         +  V  +  +I  LS +N P +A+ 
Sbjct: 127 NNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALT 186

Query: 104 LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYA 163
            +  M   G+ PN +T   +L AC  +  L  GQQ+HA   K   L++ +V   L+ +YA
Sbjct: 187 FFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYA 246

Query: 164 VCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM 223
            CG +     +F    H    R+LVSW ++I  +VK      AI  F ++   +L PD +
Sbjct: 247 KCGSMLLAENVFDEMPH----RNLVSWNSMIVGFVKNKLYGRAIGVFREV--LSLGPDQV 300

Query: 224 ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
            +  VLSAC+ L +L  G ++H  I      L   V++ N+L+DMY KCG    A K+F 
Sbjct: 301 SISSVLSACAGLVELDFGKQVHGSIVKR--GLVGLVYVKNSLVDMYCKCGLFEDATKLFC 358

Query: 284 EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLEL 343
               ++VV+WN MI G      F++A   F+ M   G++PD+ +   + ++ A+I  L  
Sbjct: 359 GGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQ 418

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           G  +H+++ K     +  I ++LV MY KCG +  A+ VFR  K  +V  +TAMI     
Sbjct: 419 GTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQ 478

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           HG A +A+ +F EM   G+ P+ +TFV VLSACSH G +++G K+F  M+ V+N++P  E
Sbjct: 479 HGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLE 538

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           HY CMVDL GR G + EA   I+SMP  PD+ VWGALLGAC  HA VE+   V E L + 
Sbjct: 539 HYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKL 598

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           EP+  G Y+L++NIY      +EA ++R+ M    V+K  GCS ++V    + F   D+S
Sbjct: 599 EPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRS 658

Query: 584 HPKTLEIYKLLDEIMHQSKNHGYI 607
           H +T EIY +L ++    K  GY+
Sbjct: 659 HSRTQEIYGMLQKLKELIKRRGYV 682


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 164/392 (41%), Positives = 264/392 (67%), Gaps = 6/392 (1%)

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC----GNI 275
           P+      VL AC+ +G+L+LG  +H  +    F    +V + N L+ MY  C    G I
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVM--KFGFGDEVNVQNTLVHMYCCCRGGEGGI 65

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             ARKVFDEM   + VSW++MI G    G+  +A+++FR MQ  G+ PD+ T+V VL++C
Sbjct: 66  EFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSAC 125

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
             +G LELGKWV +Y++K  +  +  + NAL+DM+AKCG +D+A  +FRSM+ R++ S+T
Sbjct: 126 TGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWT 185

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           ++I GLA+HG+  +A+ +F EM + G+ PD+V F+G+LSACSH+GLV++G ++F  M + 
Sbjct: 186 SVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKD 245

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           +++ P+ EHYGCMVD+  RAGL++EAL  ++ MP+ P+  VW  L+ AC+ H +++L E 
Sbjct: 246 FSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEK 305

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
           +   L+R EP  +  Y+L++NIY+  + W++  ++R+ M  + +KK PG +++E+  E Y
Sbjct: 306 ITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIY 365

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           EF  GDKSH ++ EIY+++DE+  + K  GY+
Sbjct: 366 EFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYM 397



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 191/395 (48%), Gaps = 52/395 (13%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC-- 165
           ML +  LPN +T P+VLKAC    +L +G+ VH   MK      V V NTL+ +Y  C  
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 166 --GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM 223
             G I+   K+F        + D VSW+ +I  YV++   ++AI  F +M    + PD +
Sbjct: 61  GEGGIEFARKVF----DEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEI 116

Query: 224 ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
            +V VLSAC+ LG L LG  +  Y+      +  +V + NALIDM+ KCG++  A  +F 
Sbjct: 117 TMVSVLSACTGLGALELGKWVESYVEKER--VQKNVELSNALIDMFAKCGDVDKATNLFR 174

Query: 284 EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLEL 343
            M  +N+VSW S+I GL   G+  EA+ +F  M   G+ PDD   + +L++C++ G ++ 
Sbjct: 175 SMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDK 234

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           GK     + K+               ++   +I+  +G    M CR              
Sbjct: 235 GKRYFDSMRKD---------------FSIVPKIEH-YGCMVDMLCR-------------- 264

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
            G   +AL    EM    I+P+ V +  +++AC   G ++ G K  +    + N      
Sbjct: 265 AGLVKEALKFVQEMP---IDPNPVVWRTLINACRAHGELKLGEK--ITRQLIRNEPMHES 319

Query: 464 HYGCMVDLFGRAG------LIREALDLIKSMPLVP 492
           +Y  + +++ +         IREA+D+ K M  +P
Sbjct: 320 NYVLLSNIYAKMSDWEKKTRIREAMDM-KGMKKIP 353



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 10/220 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI L+REM IKG+ P+  T+  VL AC    +L +G+ V +Y  K  +  NV + N L+
Sbjct: 98  DAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSNALI 157

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            ++A CG +     LF        +R++VSWT++I          EA+  F +M ++ + 
Sbjct: 158 DMFAKCGDVDKATNLF----RSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVT 213

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITD--NHFNLSPDVFIHNALIDMYLKCGNIPS 277
           PD ++ + +LSACS  G +  G    RY       F++ P +  +  ++DM  + G +  
Sbjct: 214 PDDVVFIGLLSACSHSGLVDKG---KRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKE 270

Query: 278 ARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           A K   EMP+  N V W ++I      G+ K    I R++
Sbjct: 271 ALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQL 310


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 206/588 (35%), Positives = 326/588 (55%), Gaps = 56/588 (9%)

Query: 30  RLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRG-NEIEN-----LSLQNPQV 83
           R+++  ++ +L    A +IKT + Q     L  + IS S   N +         ++NP V
Sbjct: 45  RIKNCSTINELHGLCASMIKTNAIQ--DCFLVHQFISASFALNSVHYPVFAFTQMENPNV 102

Query: 84  YLYNFIIQCLSNAN-PLEAIALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           ++YN +I+       P  A+  Y  ML +  +LP +YT   ++KAC    ++ +GQ VH 
Sbjct: 103 FVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHC 162

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           +  K    S+++V                                    T L+  Y K++
Sbjct: 163 HIWKKGFESHLFV-----------------------------------QTALVDFYSKLE 187

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
             +EA   F +MC+     D      +LSA +++GD+    K+   + +       +   
Sbjct: 188 ILSEARKVFDEMCER----DAFAWTAMLSALARVGDMDSARKLFEEMPER------NTAT 237

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            N +ID Y + GN+ SA  +F++MP K+++SW +MI   +   Q+++AL I+  M+  G+
Sbjct: 238 WNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGI 297

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
            PD+ T+  V ++CA+IG LELGK +H Y+    +N D +IG+ALVDMYAKCG +D +  
Sbjct: 298 IPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLL 357

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           +F  +  +++Y + A+I GLA+HG A KAL +F+ M +  I P+ VTF+ +LSAC+HAGL
Sbjct: 358 IFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGL 417

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           V+EG   FL M+R Y+++P   HYGCMVD+  ++G + EAL+LIKSM   P++ +WGALL
Sbjct: 418 VDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALL 477

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV-K 560
             CK+H   E+AE  +E L+  EP   G Y L+ ++Y+ +  W E   +R  MKE+ V K
Sbjct: 478 NGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEK 537

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
           K PG S +E+ G  ++F     SHP + +IY +L E+  Q K  GYIL
Sbjct: 538 KYPGSSWIELEGTIHQFSASADSHPDSDKIYFILTELDGQLKLAGYIL 585


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 181/508 (35%), Positives = 294/508 (57%), Gaps = 8/508 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E+I L+ EM +    P+  T+  +L+AC     L  G+ VH Y + +    +    N L+
Sbjct: 359 ESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILI 417

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG + A  ++F         +D VSW ++I  Y++     EA +  F M + +++
Sbjct: 418 NMYAKCGNLLASQEVFS----GMKCKDSVSWNSMINVYIQNGSFDEA-MKLFKMMKTDVK 472

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  V++LS  ++LGDL LG ++H  +    FN   ++ + N L+DMY KCG +  + 
Sbjct: 473 PDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFN--SNIVVSNTLVDMYAKCGEMGDSL 530

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVF+ M  +++++WN++IA   H       L +  RM+  G+ PD  T++ +L  C+ + 
Sbjct: 531 KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLA 590

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
               GK +H  + K  + +D  +GN L++MY+KCG +  +F VF+ MK +DV ++TA+I 
Sbjct: 591 AKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALIS 650

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
              ++G+  KA+  F EM   GI PD V FV ++ ACSH+GLVEEG  +F  M + Y ++
Sbjct: 651 ACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIE 710

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P+ EHY C+VDL  R+ L+ +A D I SMPL PD+ +WGALL AC++    E+A+ V E 
Sbjct: 711 PRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSER 770

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           ++   P+  G Y+L++N+Y++  +W +   +RK +K R +KK PGCS +E+  + Y F  
Sbjct: 771 IIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGT 830

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           G K   +  E+ KLL  +       GYI
Sbjct: 831 GTKFSEQFEEVNKLLGMLAGLMAKEGYI 858



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/526 (28%), Positives = 258/526 (49%), Gaps = 33/526 (6%)

Query: 20  QQLSLLHQSPR----------LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-- 67
           + L +LH+  R          L S+ +  QL + H+ II  G   H + I   K+I+   
Sbjct: 61  KTLRVLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLG--LHHSVIFSAKLIAKYA 118

Query: 68  -----SRGNEIENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLP 121
                +    +  L+  +  VY +N II+ L+ N    EA++LY E     L P+TYT P
Sbjct: 119 HFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFP 178

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
            V+ AC       + + +H   +     S++Y+ N L+ +Y     +    K+F      
Sbjct: 179 SVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVF----EE 234

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
              RD+VSW +LI  Y    Y  EA+  ++      + PD   +  VL AC  LG +  G
Sbjct: 235 MPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 294

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
             IH  I      +  DV ++N L+ MY K   +   R++FD+M +++ VSWN+MI G +
Sbjct: 295 DIIHGLI--EKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYS 352

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
             G ++E++ +F  M     KPD  T+  +L +C ++G LE GK+VH Y+  +    D  
Sbjct: 353 QVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 411

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
             N L++MYAKCG +  +  VF  MKC+D  S+ +MI     +G   +A+ +F +M +  
Sbjct: 412 ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTD 470

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           ++PD VT+V +LS  +  G +  G +   D++++            +VD++ + G + ++
Sbjct: 471 VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKM-GFNSNIVVSNTLVDMYAKCGEMGDS 529

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           L + ++M    D   W  ++ +C +H+  E   + +  + R   EG
Sbjct: 530 LKVFENMK-ARDIITWNTIIASC-VHS--EDCNLGLRMISRMRTEG 571



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 131/276 (47%), Gaps = 17/276 (6%)

Query: 74  ENLSLQNPQVYLYNFII-QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQS 132
           EN+  ++  +  +N II  C+ + +    + +   M  +G+ P+  T+  +L  C    +
Sbjct: 534 ENMKARD--IITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAA 591

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
            R G+++H    K  L S+V V N L+ +Y+ CG ++   ++F   +     +D+V+WT 
Sbjct: 592 KRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK----TKDVVTWTA 647

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK-IHRYITDN 251
           LI A        +A+ +F +M  A + PD +  V ++ ACS  G +  G+   HR   D 
Sbjct: 648 LISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKD- 706

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS-WNSMIAGLTHRGQFKEAL 310
            + + P +  +  ++D+  +   +  A      MP+K   S W ++++     G  + A 
Sbjct: 707 -YKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQ 765

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
            +  R+  + L PDD     ++++     +  LGKW
Sbjct: 766 RVSERI--IELNPDDTGYYVLVSNV----YAALGKW 795


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 167/353 (47%), Positives = 236/353 (66%), Gaps = 1/353 (0%)

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
           S D    N LI  Y + G +  AR +FDEMP +N VSW++M+ G    G  +EAL +F R
Sbjct: 274 SVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFAR 333

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           MQ  G++PDD  LV VL +CA +G LE GKWVH YL  N+I    F+G ALVDMYAKCG 
Sbjct: 334 MQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGE 393

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +  A  VF+ MK ++V ++T MI GLA+HG+  +AL++FS+M ++G++PD++ F+G L A
Sbjct: 394 MQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCA 453

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           C+H GLV++G + F  M R Y ++P+ EHYGCMVDL  R GL+ EA ++++ MP+ PDA 
Sbjct: 454 CTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDAL 513

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           +WGAL+  C+ H  VELAE V+++ +  EP+  GAY+L+ NIY++  R   A ++R  M+
Sbjct: 514 IWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMR 573

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK-NHGYI 607
           E+ V KTPGCS VE+ G  ++F  GD SHP   EI    DEI  + +   GY+
Sbjct: 574 EKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYV 626



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 179/363 (49%), Gaps = 53/363 (14%)

Query: 85  LYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ----QV 139
           L+N +I+ L+ +A P  A+ LY  +L  G  P  +TLP +LK+   S ++   +     V
Sbjct: 173 LHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAV 232

Query: 140 HAYSMKTAL--------------------LSNVYV------------FNTLMRLYAVCGL 167
           HA+++K  L                    LS+  V            FNTL+  YA  G 
Sbjct: 233 HAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGR 292

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           +     LF         R+ VSW+ ++  YV+     EA+  F  M    +RPD  +LV 
Sbjct: 293 VTDARALFD----EMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVG 348

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL+AC++LG L  G  +H Y+  N+  ++  VF+  AL+DMY KCG +  A +VF  M  
Sbjct: 349 VLAACAQLGVLEQGKWVHGYLKANNIRIT--VFLGTALVDMYAKCGEMQLAMEVFKVMKE 406

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK-- 345
           KNV++W +MI GL   G+  EAL++F +M+ LG+KPDD   +  L +C + G ++ G+  
Sbjct: 407 KNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGREL 466

Query: 346 ---WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGL 401
               V  Y  K  I   G     +VD+ A+ G +++A  +   M  + D   + A++ G 
Sbjct: 467 FDSMVRKYGIKPKIEHYG----CMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGC 522

Query: 402 AIH 404
             H
Sbjct: 523 RFH 525


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 202/610 (33%), Positives = 336/610 (55%), Gaps = 26/610 (4%)

Query: 17  NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQ----HQTQILYDKIISLSRGNE 72
           ++F  +S++     L   + +   KQ HA+ ++ G       +    +Y K+  L+    
Sbjct: 111 SSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKV 170

Query: 73  IENLSLQNPQVYLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
           +   S     +  +N ++  L  N   LEA+   REM+++G+ P+ +T+  VL AC   +
Sbjct: 171 LLG-SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLE 229

Query: 132 SLRVGQQVHAYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
            LR G+++HAY++K   L  N +V + L+ +Y  C  + +  ++F         R +  W
Sbjct: 230 MLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD----GMFDRKIGLW 285

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
             +I  Y + ++  EA+L F  M + A L  +   +  V+ AC + G  S    IH ++ 
Sbjct: 286 NAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV 345

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
                L  D F+ N L+DMY + G I  A ++F +M  +++V+WN+MI G       ++A
Sbjct: 346 KR--GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 403

Query: 310 LDIFRRMQGL-----------GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           L +  +MQ L            LKP+  TL+ +L SCA +  L  GK +H Y  KN++ T
Sbjct: 404 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 463

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           D  +G+ALVDMYAKCG +  +  VF  +  ++V ++  +I+   +HG   +A+D+   M 
Sbjct: 464 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 523

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             G++P+EVTF+ V +ACSH+G+V+EG + F  M   Y ++P ++HY C+VDL GRAG I
Sbjct: 524 VQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRI 583

Query: 479 REALDLIKSMPL-VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
           +EA  L+  MP     A  W +LLGA +IH  +E+ EI  +NL++ EP     Y+L+ NI
Sbjct: 584 KEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANI 643

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           YSS   W +A ++R+ MKE+ V+K PGCS +E   E ++F  GD SHP++ ++   L+ +
Sbjct: 644 YSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETL 703

Query: 598 MHQSKNHGYI 607
             + +  GY+
Sbjct: 704 WERMRKEGYV 713



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 135/495 (27%), Positives = 236/495 (47%), Gaps = 31/495 (6%)

Query: 41  KQFHAFIIKTGSPQHQTQI------LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS 94
           KQ HA + K G       +      LY K        ++ +   +  QV  +N +I  L 
Sbjct: 30  KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS-WNSLISSLC 88

Query: 95  NANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQ---SQSLRVGQQVHAYSMKTALLS 150
           +    E A+  +R ML + + P+++TL  V+ AC      + L +G+QVHAY ++   L 
Sbjct: 89  SFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL- 147

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           N ++ NTL+ +Y   G + +   L          RDLV+W T++ +  + +   EA+   
Sbjct: 148 NSFIINTLVAMYGKLGKLASSKVLL----GSFGGRDLVTWNTVLSSLCQNEQLLEALEYL 203

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
            +M    + PD   +  VL ACS L  L  G ++H Y   N  +L  + F+ +AL+DMY 
Sbjct: 204 REMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG-SLDENSFVGSALVDMYC 262

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLV 329
            C  + S R+VFD M  + +  WN+MIAG +     KEAL +F  M +  GL  +  T+ 
Sbjct: 263 NCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 322

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            V+ +C   G     + +H ++ K  ++ D F+ N L+DMY++ G+ID A  +F  M+ R
Sbjct: 323 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR 382

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEM-----------SQVGIEPDEVTFVGVLSACSH 438
           D+ ++  MI G         AL +  +M           S+V ++P+ +T + +L +C+ 
Sbjct: 383 DLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAA 442

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
              + +G K     +   NL         +VD++ + G ++ +  +   +P   +   W 
Sbjct: 443 LSALAKG-KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQ-KNVITWN 500

Query: 499 ALLGACKIHAKVELA 513
            ++ A  +H   + A
Sbjct: 501 VIIMAYGMHGNGQEA 515



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/408 (30%), Positives = 203/408 (49%), Gaps = 31/408 (7%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL-LSNVYVFNTLMRLYAVCG 166
           M++ G+ P+ Y  P +LKA    Q + +G+Q+HA+  K    + +V V NTL+ LY  CG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
              AV+K+F       ++R+ VSW +LI +    +    A+ +F  M   N+ P    LV
Sbjct: 61  DFGAVYKVF----DRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLV 116

Query: 227 IVLSACSKL---GDLSLGIKIHRY-ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
            V++ACS L     L +G ++H Y +     N     FI N L+ MY K G + S++ + 
Sbjct: 117 SVVTACSNLPMPEGLMMGKQVHAYGLRKGELN----SFIINTLVAMYGKLGKLASSKVLL 172

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
                +++V+WN++++ L    Q  EAL+  R M   G++PD+FT+  VL +C+++  L 
Sbjct: 173 GSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLR 232

Query: 343 LGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
            GK +H Y  KN  ++ + F+G+ALVDMY  C ++     VF  M  R +  + AMI G 
Sbjct: 233 TGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 292

Query: 402 AIHGKAWKALDIFSEMSQ-VGIEPDEVTFVGVLSACSHAGLVEEG-------CKHFLDMS 453
           + +    +AL +F  M +  G+  +  T  GV+ AC  +G             K  LD  
Sbjct: 293 SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRD 352

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           R             ++D++ R G I  A+ +   M    D   W  ++
Sbjct: 353 RFVQ--------NTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMI 391


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/537 (36%), Positives = 309/537 (57%), Gaps = 39/537 (7%)

Query: 66  SLSRGNEIENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVL 124
           SL + + + N  +Q P + ++N +I  LS ++ P +AI  Y  M  KG+  +  T  ++ 
Sbjct: 21  SLPKAHFVFN-QIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF 79

Query: 125 KACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ 184
           K+C +   +R GQ V  +SMK    S  +V N L+ +Y   G +    K+F        +
Sbjct: 80  KSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFD----GMLE 135

Query: 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI 244
           RD+VSW ++I  Y + +   + +  F +M   N+R D + ++  +SA   L +  +G  +
Sbjct: 136 RDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYL 195

Query: 245 HRYITDNHFNLSPDVFIHNALIDMY-------------------------------LKCG 273
            +YI D H  +  D+++ N LIDMY                                K G
Sbjct: 196 VKYI-DEH-GVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVG 253

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
           N+ +A+K+F+EMP ++V+SW SMI G +   Q  EA+ +F+ M    +KPD+ T+   L+
Sbjct: 254 NLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALS 313

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +CA++G L+ G+ VH Y+ K+ I +D F+GN+L+DMY KCG +++A  VF  MK RD  S
Sbjct: 314 ACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVS 373

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           +T++I GLA++G A  AL++F +M + GI P   TFVGVL AC+H GLV++G +HF  M 
Sbjct: 374 WTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSME 433

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
             Y L P+ +HYGC+VDL  R+G +  A + IK MP+VPD  +W  LL ACK+H  + LA
Sbjct: 434 NTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLA 493

Query: 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           EIV + L+  +P  +G Y+L ++ Y+  +RW + +K+RK M+   ++K    S +EV
Sbjct: 494 EIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEV 550


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 201/589 (34%), Positives = 326/589 (55%), Gaps = 58/589 (9%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIEN---LSLQNP 81
           S  L + +S+  LKQ HA++ KTG    P    ++L    +S+    +      L   NP
Sbjct: 9   SSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNP 68

Query: 82  QVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQQV 139
            V+++N +I+ L+ ++ P  ++  + EM  +   P ++++  ++LKA    +SL  G Q+
Sbjct: 69  DVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQL 128

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H  ++   L ++++V  TL+ +Y+ CG +    K+F     P    ++V+W         
Sbjct: 129 HCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEP----NVVAWNA------- 177

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP-- 257
                                       V++AC + GD+           D  FN  P  
Sbjct: 178 ----------------------------VVTACFRCGDVKGA--------DMMFNRMPFR 201

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           ++   N ++  Y K G +  ARK+F EMPVK+ VSW++MI G  H G F EA   FR +Q
Sbjct: 202 NLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQ 261

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
            +G++P++ +L   L++CA+ G +E GK +H +++K+       + NAL+D Y+KCG + 
Sbjct: 262 QVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVG 321

Query: 378 QAFGVFRSM-KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
            A  VF  M + R + S+T+MI GLA+HG   +A+ +F EM + GI PD + F+ +L AC
Sbjct: 322 MARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYAC 381

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SHAGL+E+G ++F  M  +YN++P  EHYGCMVDL+GRAG + +A + I  MP++P A +
Sbjct: 382 SHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAII 441

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W  LLGAC IH  V+LAE V E L   +P   G ++L++NIY+   +WK+   +R+ M +
Sbjct: 442 WRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTD 501

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           +++ KTPG S++EV    Y F  G+  +  T E Y+ L EIM + +  G
Sbjct: 502 QRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEG 550


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 314/524 (59%), Gaps = 9/524 (1%)

Query: 86  YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQ-SQSLRVGQQVHAYS 143
           +N +I  ++ ++  +EA+ L+ ++L  GL P+ YT+  VLKA     + L + +Q+H ++
Sbjct: 391 WNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHA 450

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +KT  +++ +V   L+  Y+    +K    LF      +   DLV+W  ++  Y +    
Sbjct: 451 IKTNNVADSFVSTALIDAYSRNRCMKEAEVLF-----GRNNFDLVAWNAMMSGYTQSHDG 505

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            + +  F  M +   R D   L  VL  C  L  ++ G ++H Y   + ++L  D+++ +
Sbjct: 506 HKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDL--DLWVSS 563

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
            ++DMY+KCG++ +A+  FD +PV + V+W ++I+G    G+ + AL +F +M+ +G+ P
Sbjct: 564 GILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLP 623

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D+FT+  +  + + +  LE G+ +H    K +  +D F+G +LVDMYAKCG ID A+ +F
Sbjct: 624 DEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLF 683

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
           + ++  ++ ++ AM+VGLA HG+  +AL +F +M  +GI+PD+VTF+GVLSACSH+GLV 
Sbjct: 684 KRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVS 743

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           E  K+   M R Y ++P+ EHY C+ D  GRAGL++EA +LI SM +   A ++  LL A
Sbjct: 744 EAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAA 803

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C++    E  + V   L+  EP    AY+L++N+Y++ ++W E    R  MK  KVKK P
Sbjct: 804 CRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDP 863

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           G S +EV  + + F   D+S+P+T  IYK + +++   K  GY+
Sbjct: 864 GFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYV 907



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 217/449 (48%), Gaps = 15/449 (3%)

Query: 63  KIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAI-ALYREMLIKGLLPNTYTLP 121
           ++ S   GN+   +S    ++   N I+    +A    A+   + +M+   L  +  T  
Sbjct: 271 QVKSFENGNDASAVS----EIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFI 326

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
            VL    +  SL +GQQVH  ++K  L   + V N+L+ +Y     I     +F    + 
Sbjct: 327 LVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVF----NN 382

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD-LSL 240
            ++RDL+SW ++I    + D   EA+  F  + +  L+PD   +  VL A S L + LSL
Sbjct: 383 MSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSL 442

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
             +IH +      N   D F+  ALID Y +   +  A  +F      ++V+WN+M++G 
Sbjct: 443 SKQIHVHAIKT--NNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNF-DLVAWNAMMSGY 499

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
           T      + L++F  M   G + DDFTL  VL +C  +  +  GK VH Y  K+  + D 
Sbjct: 500 TQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDL 559

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
           ++ + ++DMY KCG +  A   F S+   D  ++T +I G   +G+  +AL +FS+M  +
Sbjct: 560 WVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLM 619

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
           G+ PDE T   +  A S    +E+G +   +  ++ N          +VD++ + G I +
Sbjct: 620 GVLPDEFTIATLAKASSCLTALEQGRQIHANALKL-NCTSDPFVGTSLVDMYAKCGSIDD 678

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           A  L K + ++ +   W A+L     H +
Sbjct: 679 AYCLFKRIEMM-NITAWNAMLVGLAQHGE 706



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 165/343 (48%), Gaps = 8/343 (2%)

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
           K F       A  +++S   ++  Y+     +  +  F DM +++L  D +  ++VL+  
Sbjct: 273 KSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATA 332

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
            +L  L+LG ++H        +L   + + N+LI+MY K   I  AR VF+ M  ++++S
Sbjct: 333 VRLDSLALGQQVHCMALKLGLDLM--LTVSNSLINMYCKLRKIGLARTVFNNMSERDLIS 390

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI-GWLELGKWVHTYL 351
           WNS+IAG+       EA+ +F ++   GLKPD +T+  VL + +++   L L K +H + 
Sbjct: 391 WNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHA 450

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            K +   D F+  AL+D Y++  R  +   V       D+ ++ AM+ G        K L
Sbjct: 451 IKTNNVADSFVSTALIDAYSR-NRCMKEAEVLFGRNNFDLVAWNAMMSGYTQSHDGHKTL 509

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVD 470
           ++F+ M + G   D+ T   VL  C     + +G + H   +   Y+L         ++D
Sbjct: 510 ELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILD 567

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           ++ + G +  A     S+P VPD   W  L+  C  + + E A
Sbjct: 568 MYVKCGDMSAAQFAFDSIP-VPDDVAWTTLISGCIENGEEERA 609



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 149/341 (43%), Gaps = 38/341 (11%)

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           N  EA  L+R +    +  +  TL  +LK C  S  +   +  H Y+ K  L  + +V  
Sbjct: 132 NVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAG 191

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+ +Y   G +K    LF         RD+V W  +++AY++M +  EAI        +
Sbjct: 192 ALVNIYLKFGKVKEGRVLF----EEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTS 247

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            L P+ + L + LS  S  GD S                               + G + 
Sbjct: 248 GLHPNEITLRL-LSRIS--GDDS-------------------------------EAGQVK 273

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
           S     D   V  ++S N +++G  H GQ+   L  F  M    L+ D  T + VL +  
Sbjct: 274 SFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAV 333

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            +  L LG+ VH    K  ++    + N+L++MY K  +I  A  VF +M  RD+ S+ +
Sbjct: 334 RLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNS 393

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
           +I G+A      +A+ +F ++ + G++PD  T   VL A S
Sbjct: 394 VIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAAS 434



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           DL LG   H  I     N  P+ F+ N LI MY KCG++  AR+VFD+MP +++VSWNS+
Sbjct: 61  DLMLGKCTHARILALEEN--PERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSI 118

Query: 297 IAGLTHRGQ-----FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           +A      +      KEA  +FR ++   +     TL  +L  C + G++   +  H Y 
Sbjct: 119 LAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYA 178

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            K  ++ D F+  ALV++Y K G++ +   +F  M  RDV  +  M+      G   +A+
Sbjct: 179 CKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 238

Query: 412 DIFSEMSQVGIEPDEVTF 429
           D+ S     G+ P+E+T 
Sbjct: 239 DLSSAFHTSGLHPNEITL 256



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 102/442 (23%), Positives = 187/442 (42%), Gaps = 62/442 (14%)

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           L+    +  L +G+  HA  +        ++ N L+ +Y+ CG +    ++F        
Sbjct: 53  LRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFD----KMP 108

Query: 184 QRDLVSWTTLIQAYVK-----MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
           +RDLVSW +++ AY +     ++   EA L F  + Q  +    M L  +L  C   G +
Sbjct: 109 ERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 168

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
                 H Y       L  D F+  AL+++YLK G +   R +F+EMP ++VV WN M+ 
Sbjct: 169 CASESFHGYAC--KIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLK 226

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
                G  +EA+D+       GL P++ TL  +     +    E G+ V ++ + N  + 
Sbjct: 227 AYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDS--EAGQ-VKSFENGNDASA 283

Query: 359 DGFI--GNALVDMYAKCGRIDQAFGVFRSM-----KCRDV---------YSYTAMIVGLA 402
              I   N ++  Y   G+       F  M     +C  V             ++ +G  
Sbjct: 284 VSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQ 343

Query: 403 IHGKAWK------------ALDIFSEMSQVGI---------EPDEVTFVGVLSACSHAGL 441
           +H  A K             ++++ ++ ++G+         E D +++  V++  + + L
Sbjct: 344 VHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDL 403

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL-------VPDA 494
             E    F+ + R   L+P  +HY  M  +   A  + E L L K + +       V D+
Sbjct: 404 EVEAVCLFMQLLRC-GLKP--DHY-TMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADS 459

Query: 495 FVWGALLGACKIHAKVELAEIV 516
           FV  AL+ A   +  ++ AE++
Sbjct: 460 FVSTALIDAYSRNRCMKEAEVL 481


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/549 (35%), Positives = 296/549 (53%), Gaps = 42/549 (7%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL-SNVY 153
           N    EA++++R+M+++G+ PN+ T+   + AC     LR G+++H Y +K   L S++ 
Sbjct: 340 NGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 399

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI------ 207
           V N+L+  YA C  ++   + F   +    Q DLVSW  ++  Y       EAI      
Sbjct: 400 VGNSLVDYYAKCRSVEVARRKFGMIK----QTDLVSWNAMLAGYALRGSHEEAIELLSEM 455

Query: 208 ----------------------------LSFFD-MCQANLRPDGMILVIVLSACSKLGDL 238
                                       L FF  M    + P+   +   L+AC ++ +L
Sbjct: 456 KFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNL 515

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
            LG +IH Y+  NH  LS  V   +ALI MY  C ++  A  VF E+  ++VV WNS+I+
Sbjct: 516 KLGKEIHGYVLRNHIELSTGV--GSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIIS 573

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
                G+   ALD+ R M    ++ +  T+V  L +C+ +  L  GK +H ++ +  ++T
Sbjct: 574 ACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDT 633

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
             FI N+L+DMY +CG I ++  +F  M  RD+ S+  MI    +HG    A+++F +  
Sbjct: 634 CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFR 693

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
            +G++P+ +TF  +LSACSH+GL+EEG K+F  M   Y + P  E Y CMVDL  RAG  
Sbjct: 694 TMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQF 753

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            E L+ I+ MP  P+A VWG+LLGAC+IH   +LAE     L   EP+  G Y+LM NIY
Sbjct: 754 NETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIY 813

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           S+  RW++A K+R  MKER V K PGCS +EV  + + F  GD SHP   +I   ++ + 
Sbjct: 814 SAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLY 873

Query: 599 HQSKNHGYI 607
              K  GY+
Sbjct: 874 FDIKEIGYV 882



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 172/369 (46%), Gaps = 48/369 (13%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E I L+  M+ +G+ P+ +  P V KAC + ++ RVG+ V+ Y +      N  V  +++
Sbjct: 173 ETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSIL 232

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            ++  CG +    + F   +     +D+  W  ++  Y       +A+    DM  + ++
Sbjct: 233 DMFIKCGRMDIARRFFEEIEF----KDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVK 288

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +                                       NA+I  Y + G    A 
Sbjct: 289 PDQVTW-------------------------------------NAIISGYAQSGQFEEAS 311

Query: 280 KVFDEMP-----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           K F EM        NVVSW ++IAG    G   EAL +FR+M   G+KP+  T+   +++
Sbjct: 312 KYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSA 371

Query: 335 CANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           C N+  L  G+ +H Y  K   +++D  +GN+LVD YAKC  ++ A   F  +K  D+ S
Sbjct: 372 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 431

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           + AM+ G A+ G   +A+++ SEM   GIEPD +T+ G+++  +  G  +   + F  M 
Sbjct: 432 WNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMH 491

Query: 454 RVYNLQPQT 462
            +  + P T
Sbjct: 492 SM-GMDPNT 499



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 201/459 (43%), Gaps = 72/459 (15%)

Query: 63  KIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPY 122
           +I   S G  +    + N    L    +  +   NP E I +Y                 
Sbjct: 54  RITGFSGGGSVHRNGVLNNAAML----LSSMDLTNPDECIEIYAS--------------- 94

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+ C +  +LR+G QVHA  +   +    ++ + L+ +Y   G ++   ++F       
Sbjct: 95  ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFD----KM 150

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
           ++R++ SWT +++ Y  +    E I  F+ M    +RPD  +   V  ACS+L +  +G 
Sbjct: 151 SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 210

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            ++ Y+    F    +  +  +++DM++KCG +  AR+ F+E+  K+V  WN M++G T 
Sbjct: 211 DVYDYMLSIGF--EGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 268

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
           +G+FK+AL     M+  G+KPD  T            W                      
Sbjct: 269 KGEFKKALKCISDMKLSGVKPDQVT------------W---------------------- 294

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKC-----RDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            NA++  YA+ G+ ++A   F  M        +V S+TA+I G   +G  ++AL +F +M
Sbjct: 295 -NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKM 353

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
              G++P+ +T    +SAC++  L+  G +      +V  L         +VD + +   
Sbjct: 354 VLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRS 413

Query: 478 I---REALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           +   R    +IK   LV     W A+L    +    E A
Sbjct: 414 VEVARRKFGMIKQTDLVS----WNAMLAGYALRGSHEEA 448



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 7/224 (3%)

Query: 78  LQNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           L    V ++N II  C  +   + A+ L REM +  +  NT T+   L AC +  +LR G
Sbjct: 560 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG 619

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +++H + ++  L +  ++ N+L+ +Y  CG I+   ++F        QRDLVSW  +I  
Sbjct: 620 KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDL----MPQRDLVSWNVMISV 675

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y    +  +A+  F       L+P+ +    +LSACS  G +  G K  + +    + + 
Sbjct: 676 YGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK-MMKTEYAMD 734

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAG 299
           P V  +  ++D+  + G      +  ++MP + N   W S++  
Sbjct: 735 PAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 778



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 38/254 (14%)

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           +L  C  +  L LG  VH  L  N ++   F+G+ L+++Y + G ++ A  +F  M  R+
Sbjct: 95  ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERN 154

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           V+S+TA++      G   + + +F  M   G+ PD   F  V  ACS       G K   
Sbjct: 155 VFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG-KDVY 213

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
           D       +  +   G ++D+F + G +  A    + +    D F+W             
Sbjct: 214 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF-KDVFMWN------------ 260

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK--KTPGCSLV 568
                                 +M + Y+SK  +K+ALK    MK   VK  +    +++
Sbjct: 261 ----------------------IMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAII 298

Query: 569 EVYGEFYEFRKGDK 582
             Y +  +F +  K
Sbjct: 299 SGYAQSGQFEEASK 312


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 202/577 (35%), Positives = 319/577 (55%), Gaps = 20/577 (3%)

Query: 41   KQFHAFIIKTGSPQHQTQ-----ILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
            KQ H  ++++G  Q  +       +Y K  S+SR   +     +   +     I  C  +
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLS 1014

Query: 96   ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG----QQVHAYSMKTALLSN 151
                 ++ ++  +L   LLP+ +T+  VL+AC    SL  G     Q+HA +MK  ++ +
Sbjct: 1015 GLEECSVGMFVHLLRDSLLPDQFTVASVLRAC---SSLEGGYYLATQIHACAMKAGVVLD 1071

Query: 152  VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY-VKMDYPTEAILSF 210
             +V   L+ +Y+  G ++    LF      Q   DL SW  ++  Y V  D+P +A+  +
Sbjct: 1072 SFVSTALIDVYSKRGKMEEAEFLFV----NQDGFDLASWNAIMHGYIVSGDFP-KALRLY 1126

Query: 211  FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
              M ++  R D + LV    A   L  L  G +IH  +    FNL  D+F+ + ++DMYL
Sbjct: 1127 ILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNL--DLFVTSGVLDMYL 1184

Query: 271  KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
            KCG + SAR+VF E+P  + V+W +MI+G    GQ + AL  + +M+   ++PD++T   
Sbjct: 1185 KCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFAT 1244

Query: 331  VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
            ++ +C+ +  LE G+ +H  + K +   D F+  +LVDMYAKCG I+ A G+F+    R 
Sbjct: 1245 LVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRR 1304

Query: 391  VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
            + S+ AMIVGLA HG A +AL  F  M   G+ PD VTF+GVLSACSH+GLV E  ++F 
Sbjct: 1305 IASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFY 1364

Query: 451  DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
             M + Y ++P+ EHY C+VD   RAG I EA  +I SMP    A ++  LL AC++    
Sbjct: 1365 SMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDR 1424

Query: 511  ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
            E  + V E L+  EP    AY+L++N+Y++ N+W+     R  M++  VKK PG S V++
Sbjct: 1425 ETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDL 1484

Query: 571  YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              + + F  GD+SH +T  IY  ++ IM + +  GY+
Sbjct: 1485 KNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYV 1521



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 149/584 (25%), Positives = 249/584 (42%), Gaps = 74/584 (12%)

Query: 9    SGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLS 68
            +G R +D+ T + LS +     ++  K++ +LKQF A+  K          +YD      
Sbjct: 855  TGFRPDDV-TLRTLSRV-----VKCKKNILELKQFKAYATKL--------FMYDD----- 895

Query: 69   RGNEIENLSLQNPQVYLYNFII-QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKAC 127
                          V ++N  + + L      EA+  + +M+   +  +  T   +L   
Sbjct: 896  ----------DGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVV 945

Query: 128  WQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDL 187
                 L +G+Q+H   M++ L   V V N L+ +Y   G +     +F        + DL
Sbjct: 946  AGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVF----GQMNEVDL 1001

Query: 188  VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL-GDLSLGIKIHR 246
            +SW T+I           ++  F  + + +L PD   +  VL ACS L G   L  +IH 
Sbjct: 1002 ISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHA 1061

Query: 247  YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
                    L  D F+  ALID+Y K G +  A  +F      ++ SWN+++ G    G F
Sbjct: 1062 CAMKAGVVL--DSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDF 1119

Query: 307  KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
             +AL ++  MQ  G + D  TLV    +   +  L+ GK +H  + K   N D F+ + +
Sbjct: 1120 PKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGV 1179

Query: 367  VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
            +DMY KCG ++ A  VF  +   D  ++T MI G   +G+   AL  + +M    ++PDE
Sbjct: 1180 LDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDE 1239

Query: 427  VTFVGVLSACS-----------HAGLVEEGC-------KHFLDM-SRVYNLQP------- 460
             TF  ++ ACS           HA +V+  C          +DM ++  N++        
Sbjct: 1240 YTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKR 1299

Query: 461  ----QTEHYGCMVDLFGRAGLIREALDL---IKSMPLVPDAFVWGALLGACKIHAKVELA 513
                +   +  M+    + G  +EAL     +KS  ++PD   +  +L AC     V  A
Sbjct: 1300 TNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEA 1359

Query: 514  E---IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
                  M+     EPE +  Y  + +  S   R +EA K+   M
Sbjct: 1360 YENFYSMQKNYGIEPEIE-HYSCLVDALSRAGRIEEAEKVISSM 1402



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 178/433 (41%), Gaps = 48/433 (11%)

Query: 94   SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
            S ANPL      R  LI  L P  ++   +L+    +  L +G++ HA  + +    + +
Sbjct: 641  STANPLTP----RAHLIHSL-PQCFS---ILRQAIAASDLSLGKRAHARILTSGHHPDRF 692

Query: 154  VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK-MDYPTEAILSFFD 212
            V N L+ +YA CG + +  KLF     P   RDLV+W  ++ A     D   +    F  
Sbjct: 693  VTNNLITMYAKCGSLSSARKLFD--TTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRL 750

Query: 213  MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
            + ++ +      L  V   C      S    +H Y       L  DVF+  AL+++Y K 
Sbjct: 751  LRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAV--KIGLQWDVFVAGALVNIYAKF 808

Query: 273  GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC-- 330
            G I  AR +FD M V++VV WN M+          EA+ +F      G +PDD TL    
Sbjct: 809  GLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLS 868

Query: 331  -VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
             V+    NI  LEL K    Y  K             + MY   G               
Sbjct: 869  RVVKCKKNI--LEL-KQFKAYATK-------------LFMYDDDG--------------S 898

Query: 390  DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
            DV  +   +      G+AW+A+D F +M    +  D +TFV +L+  +    +E G K  
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELG-KQI 957

Query: 450  LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
              +     L        C+++++ +AG +  A  +   M  V D   W  ++  C +   
Sbjct: 958  HGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEV-DLISWNTMISGCTLSGL 1016

Query: 510  VELAEIVMENLVR 522
             E +  +  +L+R
Sbjct: 1017 EECSVGMFVHLLR 1029


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 167/353 (47%), Positives = 236/353 (66%), Gaps = 1/353 (0%)

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
           S D    N LI  Y + G +  AR +FDEMP +N VSW++M+ G    G  +EAL +F R
Sbjct: 274 SVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFAR 333

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           MQ  G++PDD  LV VL +CA +G LE GKWVH YL  N+I    F+G ALVDMYAKCG 
Sbjct: 334 MQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGE 393

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +  A  VF+ MK ++V ++T MI GLA+HG+  +AL++FS+M ++G++PD++ F+G L A
Sbjct: 394 MQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCA 453

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           C+H GLV++G + F  M R Y ++P+ EHYGCMVDL  R GL+ EA ++++ MP+ PDA 
Sbjct: 454 CTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDAL 513

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           +WGAL+  C+ H  VELAE V+++ +  EP+  GAY+L+ NIY++  R   A ++R  M+
Sbjct: 514 IWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMR 573

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK-NHGYI 607
           E+ V KTPGCS VE+ G  ++F  GD SHP   EI    DEI  + +   GY+
Sbjct: 574 EKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYV 626



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 179/363 (49%), Gaps = 53/363 (14%)

Query: 85  LYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ----QV 139
           L+N +I+ L+ +A P  A+ LY  +L  G  P  +TLP +LK+   S ++   +     V
Sbjct: 173 LHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAV 232

Query: 140 HAYSMKTAL--------------------LSNVYV------------FNTLMRLYAVCGL 167
           HA+++K  L                    LS+  V            FNTL+  YA  G 
Sbjct: 233 HAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGR 292

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           +     LF         R+ VSW+ ++  YV+     EA+  F  M    +RPD  +LV 
Sbjct: 293 VTDARALFD----EMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVG 348

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL+AC++LG L  G  +H Y+  N+  ++  VF+  AL+DMY KCG +  A +VF  M  
Sbjct: 349 VLAACAQLGVLEQGKWVHGYLKANNIRIT--VFLGTALVDMYAKCGEMQLAMEVFKVMKE 406

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK-- 345
           KNV++W +MI GL   G+  EAL++F +M+ LG+KPDD   +  L +C + G ++ G+  
Sbjct: 407 KNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGREL 466

Query: 346 ---WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGL 401
               V  Y  K  I   G     +VD+ A+ G +++A  +   M  + D   + A++ G 
Sbjct: 467 FDSMVRKYGIKPKIEHYG----CMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGC 522

Query: 402 AIH 404
             H
Sbjct: 523 RFH 525


>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
 gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
 gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
          Length = 509

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/436 (42%), Positives = 271/436 (62%), Gaps = 14/436 (3%)

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K  L     V + L+ LY   G + +   L      P A RD+VS T ++  + +  +  
Sbjct: 78  KLGLDRRRAVRDGLVELYLARGELASARALVD--GFP-AGRDVVSCTAMVTGHARHGFLD 134

Query: 205 EAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
           EA++ FF M     +  D +      SAC+++GDL+LG + HR + +    +  DV   N
Sbjct: 135 EAVVLFFAMADDRCVAIDAVAAAAAFSACAQIGDLALGREAHRRVAERKVAM--DVVAWN 192

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           AL+DMY KCG+  +A + F  MPVK NVVSWN+M++     G+ +EAL +F+ MQ   ++
Sbjct: 193 ALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVR 252

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PDD T V  L +CA +G L+ G+W+H Y+ +   + DG +GNAL+DMYAKCG +DQA  V
Sbjct: 253 PDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAVDQATEV 312

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F  M  RDVY+YT+MI+GLA+HG+   AL +F+ M + G+ P+EVT +GVL+AC HAGLV
Sbjct: 313 FDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLV 372

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           EEG +    M      +P+ EHYGC+VD+ GRAG + +A +LI +MP+  DA +W +LL 
Sbjct: 373 EEGLQQLNAMP-----EPRIEHYGCVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLLA 427

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           AC+ H  VE AE VM   V     GD  Y+LM+N Y+S  R  EA+K+R +M+  ++ K 
Sbjct: 428 ACRAHGDVERAERVMRRRVADADAGD--YVLMSNTYASNGRHGEAVKVRGQMRRNEIDKV 485

Query: 563 PGCSLVEVYGEFYEFR 578
           PGCSL+E+ G  +EF+
Sbjct: 486 PGCSLIEIDGVVHEFK 501



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 150/283 (53%), Gaps = 10/283 (3%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
           Q   L +G++ H    +  +  +V  +N L+ +YA CG   A H+   FR+ P  ++++V
Sbjct: 165 QIGDLALGREAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRW--FRRMP-VKKNVV 221

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
           SW T++ A+ +     EA+  F +M  A +RPD    V  L AC++LG L  G  +H Y+
Sbjct: 222 SWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYM 281

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
                  S D  + NAL+DMY KCG +  A +VFD M  ++V ++ SMI GL   G+ ++
Sbjct: 282 --GRMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHGRGED 339

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           AL +F  MQ  G+ P++ TL+ VL +C + G +E G      + +  I   G +    VD
Sbjct: 340 ALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQQLNAMPEPRIEHYGCV----VD 395

Query: 369 MYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKA 410
           M  + GR+D+A  +  +M    D   +++++     HG   +A
Sbjct: 396 MLGRAGRLDKAEELIAAMPVHSDALIWSSLLAACRAHGDVERA 438



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 16/238 (6%)

Query: 82  QVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V  +N ++   + A  LE A+AL++EM    + P+  T    L AC Q  +L  G+ +H
Sbjct: 219 NVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLH 278

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           AY  +    ++  V N L+ +YA CG +    ++F       A+RD+ ++T++I      
Sbjct: 279 AYMGRMGHSADGVVGNALLDMYAKCGAVDQATEVF----DGMARRDVYTYTSMILGLAMH 334

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               +A+  F  M +A + P+ + L+ VL+AC   G +  G++          N  P+  
Sbjct: 335 GRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQ--------QLNAMPEPR 386

Query: 261 I--HNALIDMYLKCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRR 315
           I  +  ++DM  + G +  A ++   MPV  + + W+S++A     G  + A  + RR
Sbjct: 387 IEHYGCVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLLAACRAHGDVERAERVMRR 444


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 204/567 (35%), Positives = 317/567 (55%), Gaps = 18/567 (3%)

Query: 17  NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGN 71
           N    +SLL  S  LE  +     ++ H + +K G     T        Y K  S+    
Sbjct: 111 NLVSVISLLPISAALEDEE---MTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALW 167

Query: 72  EIENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQS 130
           ++ N +++  +V  +N II  L+      +A+  +R M+  G  PN+ T+  +L    + 
Sbjct: 168 QVFNETVEKNEVS-WNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVEL 226

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
           +  + G+++H +SM+    +++++ N+L+ +YA  G       +FH       +R++VSW
Sbjct: 227 ECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLD----RRNIVSW 282

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
             +I  Y     P EAI     M +    P+ +    VL AC++LG L  G +IH     
Sbjct: 283 NAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGV- 341

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
               L+ D+F+ N+LIDMY KCG + SAR VF+    K+ VS+N +I G +      ++L
Sbjct: 342 -RIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSL 399

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           ++F  M+ LG KPD  + V V+++CAN+  L+ GK VH    +NH+ +  F+ N+L+D Y
Sbjct: 400 NLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFY 459

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
            KCGRID A  +F  +  +DV S+  MI+G  + G+   A+ +F  M    ++ D V+++
Sbjct: 460 TKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYI 519

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
            VLSACSH GLVE G ++F +M     L+P   HY CMVDL GRAG + EA  LI+ +P+
Sbjct: 520 AVLSACSHGGLVERGWQYFSEM-LAQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPI 578

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            PDA +WGALLGAC+I+  VEL     E+L   +P+  G YIL++NIY+   RW EA K+
Sbjct: 579 APDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKI 638

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEF 577
           R+ MK R  KK PGCS V++Y + + F
Sbjct: 639 RELMKSRGAKKNPGCSWVQIYDQVHAF 665



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 195/381 (51%), Gaps = 8/381 (2%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           M+ +G+  + +T P+VLK C  S  +  G +VH    K    ++VYV NTL+ LY  CG 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAY-VKMDYPTEAILSFFDMCQANLRPDGMILV 226
           +    +LF        +RD+VSW T+I    V  DY       F+ + ++ ++P+ + ++
Sbjct: 61  LNDARRLF----DEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVI 116

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
            +L   + L D  +  +IH Y       L   V   NAL+D Y KCG++ +  +VF+E  
Sbjct: 117 SLLPISAALEDEEMTRRIHCYSV--KVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETV 174

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
            KN VSWNS+I GL  +G+  +AL+ FR M   G +P+  T+  +L     +   + GK 
Sbjct: 175 EKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKE 234

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           +H +  +    TD FI N+L+DMYAK G   +A  +F ++  R++ S+ AMI   A++  
Sbjct: 235 IHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRL 294

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
             +A+    +M + G  P+ VTF  VL AC+  G +  G K    M     L        
Sbjct: 295 PLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPG-KEIHAMGVRIGLTSDLFVSN 353

Query: 467 CMVDLFGRAGLIREALDLIKS 487
            ++D++ + G +  A ++  +
Sbjct: 354 SLIDMYAKCGCLHSARNVFNT 374


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/513 (36%), Positives = 291/513 (56%), Gaps = 7/513 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N +   A+ L  +M   G  P++ TL  +L A    ++LR+G+ +H Y+ ++   S V V
Sbjct: 224 NGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNV 283

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ +Y  CG  +    +F   +     + +VSW T+I    +     EA  +F  M 
Sbjct: 284 TNALLDMYFKCGSARIARLVFKGMR----SKTVVSWNTMIDGCAQNGESEEAFATFLKML 339

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
                P  + ++ VL AC+ LGDL  G  +H+ +  +   L  +V + N+LI MY KC  
Sbjct: 340 DEGEVPTRVTMMGVLLACANLGDLERGWFVHKLL--DKLKLDSNVSVMNSLISMYSKCKR 397

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A  +F+ +   NV +WN+MI G    G  KEAL++F  MQ  G+K D FTLV V+ +
Sbjct: 398 VDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITA 456

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
            A+       KW+H    +  ++ + F+  ALVDMYAKCG I  A  +F  M+ R V ++
Sbjct: 457 LADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITW 516

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            AMI G   HG   + LD+F+EM +  ++P+++TF+ V+SACSH+G VEEG   F  M  
Sbjct: 517 NAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQE 576

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y L+P  +HY  MVDL GRAG + +A + I+ MP+ P   V GA+LGACKIH  VEL E
Sbjct: 577 DYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGE 636

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
              + L + +P+  G ++L+ NIY+S + W +  K+R  M+++ + KTPGCS VE+  E 
Sbjct: 637 KAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEI 696

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + F  G  +HP++ +IY  L+ +  + K  GY+
Sbjct: 697 HTFYSGSTNHPESKKIYAFLETLGDEIKAAGYV 729



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 174/590 (29%), Positives = 291/590 (49%), Gaps = 63/590 (10%)

Query: 26  HQSPR---LESSKSVGQLKQFHAFIIKTG-SPQH--QTQI--LYDKIISLSRGNEI-ENL 76
           H+ P    LE+  S  +L Q   FIIK G   +H  QT++  L+ K  S S    + E++
Sbjct: 46  HRHPSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHV 105

Query: 77  SLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
            L+     LY+ +++  +  + L +A+  +  M+   +         +L+ C ++  L+ 
Sbjct: 106 ELKLD--VLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKK 163

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G+++H   +     SN++V   +M LYA C  I   +K+F   QH    +DLVSWTTL+ 
Sbjct: 164 GREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQH----KDLVSWTTLVA 219

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            Y +  +   A+     M +A  +PD + LV +L A + +  L +G  IH Y   + F  
Sbjct: 220 GYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGF-- 277

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
              V + NAL+DMY KCG+   AR VF  M  K VVSWN+MI G    G+ +EA   F +
Sbjct: 278 ESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLK 337

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M   G  P   T++ VL +CAN+G LE G +VH  LDK  ++++  + N+L+ MY+KC R
Sbjct: 338 MLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKR 397

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +D A  +F +++  +V ++ AMI+G A +G   +AL++F  M   GI+ D  T VGV++A
Sbjct: 398 VDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITA 456

Query: 436 CSH----------AGLVEEGC--------KHFLDM----------SRVYNLQPQTEH--- 464
            +            GL    C           +DM           +++++  Q  H   
Sbjct: 457 LADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMM-QERHVIT 515

Query: 465 YGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
           +  M+D +G  G+ +E LDL   M    + P+   + +++ AC     VE   ++ +++ 
Sbjct: 516 WNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQ 575

Query: 522 R---FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
                EP  D  Y  M ++     +  +A    ++M  +     PG S++
Sbjct: 576 EDYYLEPTMD-HYSAMVDLLGRAGQLDDAWNFIQEMPIK-----PGISVL 619



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 183/362 (50%), Gaps = 32/362 (8%)

Query: 78  LQNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +++  V  +N +I  C  N    EA A + +ML +G +P   T+  VL AC     L  G
Sbjct: 307 MRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG 366

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
             VH    K  L SNV V N+L+ +Y+ C  +     +F+       ++  V+W  +I  
Sbjct: 367 WFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFN-----NLEKTNVTWNAMILG 421

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK---IH----RYIT 249
           Y +     EA+  F  M    ++ D   LV V++A   L D S+  +   IH    R   
Sbjct: 422 YAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITA---LADFSVNRQAKWIHGLAVRACM 478

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
           DN      +VF+  AL+DMY KCG I +ARK+FD M  ++V++WN+MI G    G  KE 
Sbjct: 479 DN------NVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKET 532

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI---NTDGFIGNAL 366
           LD+F  MQ   +KP+D T + V+++C++ G++E G  +   + +++      D +  +A+
Sbjct: 533 LDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHY--SAM 590

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ--VGIEP 424
           VD+  + G++D A+   + M  +   S    ++G     K  K +++  + +Q    ++P
Sbjct: 591 VDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGAC---KIHKNVELGEKAAQKLFKLDP 647

Query: 425 DE 426
           DE
Sbjct: 648 DE 649


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 202/610 (33%), Positives = 336/610 (55%), Gaps = 26/610 (4%)

Query: 17  NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQ----HQTQILYDKIISLSRGNE 72
           ++F  +S++     L   + +   KQ HA+ ++ G       +    +Y K+  L+    
Sbjct: 198 SSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKV 257

Query: 73  IENLSLQNPQVYLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
           +   S     +  +N ++  L  N   LEA+   REM+++G+ P+ +T+  VL AC   +
Sbjct: 258 LLG-SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLE 316

Query: 132 SLRVGQQVHAYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
            LR G+++HAY++K   L  N +V + L+ +Y  C  + +  ++F         R +  W
Sbjct: 317 MLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD----GMFDRKIGLW 372

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
             +I  Y + ++  EA+L F  M + A L  +   +  V+ AC + G  S    IH ++ 
Sbjct: 373 NAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV 432

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
                L  D F+ N L+DMY + G I  A ++F +M  +++V+WN+MI G       ++A
Sbjct: 433 KR--GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490

Query: 310 LDIFRRMQGL-----------GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           L +  +MQ L            LKP+  TL+ +L SCA +  L  GK +H Y  KN++ T
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           D  +G+ALVDMYAKCG +  +  VF  +  ++V ++  +I+   +HG   +A+D+   M 
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 610

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             G++P+EVTF+ V +ACSH+G+V+EG + F  M   Y ++P ++HY C+VDL GRAG I
Sbjct: 611 VQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRI 670

Query: 479 REALDLIKSMPL-VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
           +EA  L+  MP     A  W +LLGA +IH  +E+ EI  +NL++ EP     Y+L+ NI
Sbjct: 671 KEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANI 730

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           YSS   W +A ++R+ MKE+ V+K PGCS +E   E ++F  GD SHP++ ++   L+ +
Sbjct: 731 YSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETL 790

Query: 598 MHQSKNHGYI 607
             + +  GY+
Sbjct: 791 WERMRKEGYV 800



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/416 (30%), Positives = 208/416 (50%), Gaps = 31/416 (7%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL-LSNVYVFNTL 158
           EA+  Y +M++ G+ P+ Y  P +LKA    Q + +G+Q+HA+  K    + +V V NTL
Sbjct: 80  EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTL 139

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + LY  CG   AV+K+F       ++R+ VSW +LI +    +    A+ +F  M   N+
Sbjct: 140 VNLYRKCGDFGAVYKVF----DRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV 195

Query: 219 RPDGMILVIVLSACSKL---GDLSLGIKIHRY-ITDNHFNLSPDVFIHNALIDMYLKCGN 274
            P    LV V++ACS L     L +G ++H Y +     N     FI N L+ MY K G 
Sbjct: 196 EPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELN----SFIINTLVAMYGKLGK 251

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           + S++ +      +++V+WN++++ L    Q  EAL+  R M   G++PD+FT+  VL +
Sbjct: 252 LASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPA 311

Query: 335 CANIGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           C+++  L  GK +H Y  KN  ++ + F+G+ALVDMY  C ++     VF  M  R +  
Sbjct: 312 CSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL 371

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQ-VGIEPDEVTFVGVLSACSHAGLVEEG------- 445
           + AMI G + +    +AL +F  M +  G+  +  T  GV+ AC  +G            
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 431

Query: 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
            K  LD  R             ++D++ R G I  A+ +   M    D   W  ++
Sbjct: 432 VKRGLDRDRFVQ--------NTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMI 478



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 146/260 (56%), Gaps = 7/260 (2%)

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W  L+++ V+ +   EA+L++ DM    ++PD      +L A + L D+ LG +IH ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
              + +   V + N L+++Y KCG+  +  KVFD +  +N VSWNS+I+ L    +++ A
Sbjct: 125 KFGYGVD-SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE---LGKWVHTY-LDKNHINTDGFIGNA 365
           L+ FR M    ++P  FTLV V+ +C+N+   E   +GK VH Y L K  +N+  FI N 
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNS--FIINT 241

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           LV MY K G++  +  +  S   RD+ ++  ++  L  + +  +AL+   EM   G+EPD
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query: 426 EVTFVGVLSACSHAGLVEEG 445
           E T   VL ACSH  ++  G
Sbjct: 302 EFTISSVLPACSHLEMLRTG 321


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 190/533 (35%), Positives = 305/533 (57%), Gaps = 9/533 (1%)

Query: 78  LQNPQVYLYNFIIQCLS-NANPLEAIALYREM-LIKGLLPNTYTLPYVLKACWQSQSLRV 135
            Q P   L+  ++     N +P EA+AL+ +M ++  ++ +  TL  V+ AC Q  +++ 
Sbjct: 165 FQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKA 224

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G  VH   ++     ++ + N+L+ LYA  G  K    LF        ++D++SW+T+I 
Sbjct: 225 GSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFS----KMPEKDVISWSTMIA 280

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            Y   +   EA+  F +M +    P+ + +V  L AC+   +L  G KIH+      F L
Sbjct: 281 CYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFEL 340

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             D  +  ALIDMY+KC     A  +F  +P K+VVSW ++++G    G   +++ +FR 
Sbjct: 341 --DFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRN 398

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M   G++PD   +V +L + + +G  +    +H Y+ ++  N++ F+G +L+++Y+KCG 
Sbjct: 399 MLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGS 458

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLS 434
           +  A  +F+ M  RDV  +++MI    IHG+  +AL+IF +M     + P+ VTF+ +LS
Sbjct: 459 LGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILS 518

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           ACSHAGLVEEG K F  M   Y L+P +EH+G MVDL GR G + +A+D+I  MP+    
Sbjct: 519 ACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGP 578

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            VWGALLGAC+IH  +E+ E   +NL   +P   G YIL++NIY+   +W    +LR ++
Sbjct: 579 HVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRI 638

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           KER +KK  G S+VEV G  + F   D+ HP + +IY+LL ++  Q     YI
Sbjct: 639 KERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYI 691



 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 166/418 (39%), Positives = 257/418 (61%), Gaps = 2/418 (0%)

Query: 190  WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
            W  +I+ +        ++  +  M +  L+PD       L +C+ L DL  G  IH+++ 
Sbjct: 786  WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV 845

Query: 250  DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
                  S D+F+  AL+DMY KCG+I +AR VFD+M V+++VSW SMI+G  H G   E 
Sbjct: 846  --CCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSET 903

Query: 310  LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
            L  F  M+  G+ P+  +++ VL +C N+G L  G+W H+Y+ +     D  +  A++DM
Sbjct: 904  LGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDM 963

Query: 370  YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
            Y+KCG +D A  +F     +D+  ++AMI    IHG   KA+D+F +M + G+ P  VTF
Sbjct: 964  YSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTF 1023

Query: 430  VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
              VLSACSH+GL+EEG  +F  M+  + +  +  +Y CMVDL GRAG + EA+DLI++MP
Sbjct: 1024 TCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMP 1083

Query: 490  LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549
            + PDA +WG+LLGAC+IH  ++LAE + ++L   +P   G ++L++NIY++K+RW E  K
Sbjct: 1084 VEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEK 1143

Query: 550  LRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +RK M  R   K  G SLVE   + ++F  GD+SHP+  ++Y  L+E+    K+ GY+
Sbjct: 1144 VRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYV 1201



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 145/495 (29%), Positives = 255/495 (51%), Gaps = 22/495 (4%)

Query: 39  QLKQFHAFIIKTGSPQHQT------QILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQC 92
            + Q H+ + KTG   H T        LY K  SL    ++ +    +P V+L+N  ++ 
Sbjct: 19  SVSQLHSQVFKTG-ILHDTFFATKLNSLYAKCASLQAARKVFD-ETPHPNVHLWNSTLRS 76

Query: 93  LSNANPLE-AIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT-ALL 149
                  E  + L+  M+   G  P+ +T+P  LKAC   + L +G+ +H ++ K   + 
Sbjct: 77  YCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIG 136

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
           S+++V + L+ LY+ CG +    K+F   Q P    D V WT+++  Y + + P EA+  
Sbjct: 137 SDMFVGSALVELYSKCGQMGEALKVFEEFQRP----DTVLWTSMVTGYQQNNDPEEALAL 192

Query: 210 FFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
           F  M   + +  D + LV V+SAC++L ++  G  +H  +    F+   D+ + N+L+++
Sbjct: 193 FSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFD--GDLPLVNSLLNL 250

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y K G    A  +F +MP K+V+SW++MIA   +     EAL++F  M     +P+  T+
Sbjct: 251 YAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTV 310

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
           V  L +CA    LE GK +H          D  +  AL+DMY KC   D+A  +F+ +  
Sbjct: 311 VSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPK 370

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CK 447
           +DV S+ A++ G A +G A+K++ +F  M   GI+PD V  V +L+A S  G+ ++  C 
Sbjct: 371 KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCL 430

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           H   +   +N          +++L+ + G + +A+ L K M +V D  +W +++ A  IH
Sbjct: 431 HGYVVRSGFNSNVFVG--ASLIELYSKCGSLGDAVKLFKGM-IVRDVVIWSSMIAAYGIH 487

Query: 508 AKVELAEIVMENLVR 522
            +   A  + + +V+
Sbjct: 488 GRGGEALEIFDQMVK 502



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 209/406 (51%), Gaps = 26/406 (6%)

Query: 8    ASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL 67
            A+ S+Y  I +         +P  ++      LK+ HA I   G  Q+ ++IL    I  
Sbjct: 713  ATESKYKTIGS---------APGTDTISCFSCLKKTHAKIFAYG-LQYDSRILTKFAIMY 762

Query: 68   SRGNEIENLSL-----QNPQVYLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYTLP 121
               N I+  S+      NP  +L+N +I+   ++   L ++ LY +M+ KGL P+ +  P
Sbjct: 763  VSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFP 822

Query: 122  YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
            + LK+C     L+ G+ +H + +     ++++V   L+ +YA CG I+A   +F      
Sbjct: 823  FALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVF----DK 878

Query: 182  QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSL 240
             A RDLVSWT++I  Y    Y +E  L FFD+ +++ + P+ + ++ VL AC  LG L  
Sbjct: 879  MAVRDLVSWTSMISGYAHNGYNSET-LGFFDLMRSSGVIPNRVSILSVLLACGNLGALRK 937

Query: 241  GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
            G   H Y+    F    D+ +  A++DMY KCG++  AR +FDE   K++V W++MIA  
Sbjct: 938  GEWFHSYVIQTGFEF--DILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASY 995

Query: 301  THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
               G  ++A+D+F +M   G++P   T  CVL++C++ G LE GK     + +  +    
Sbjct: 996  GIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARK 1055

Query: 361  FIGNA-LVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIH 404
                A +VD+  + G++ +A  +  +M    D   + +++    IH
Sbjct: 1056 LSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIH 1101



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 194/382 (50%), Gaps = 14/382 (3%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           + +AC   +S+    Q+H+   KT +L + +    L  LYA C  ++A  K+F    HP 
Sbjct: 10  LFQACNNGRSV---SQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLG 241
                  W + +++Y +     E +  F  M C A   PD   + I L AC+ L  L LG
Sbjct: 67  VHL----WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
             IH +   N   +  D+F+ +AL+++Y KCG +  A KVF+E    + V W SM+ G  
Sbjct: 123 KVIHGFAKKND-EIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQ 181

Query: 302 HRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
                +EAL +F +M  +  +  D  TLV V+++CA +  ++ G  VH  + +   + D 
Sbjct: 182 QNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDL 241

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            + N+L+++YAK G    A  +F  M  +DV S++ MI   A +  A +AL++F EM + 
Sbjct: 242 PLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEK 301

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             EP+ VT V  L AC+ +  +EEG K H + + + + L         ++D++ +     
Sbjct: 302 RFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVS--TALIDMYMKCSCPD 359

Query: 480 EALDLIKSMPLVPDAFVWGALL 501
           EA+DL + +P   D   W ALL
Sbjct: 360 EAVDLFQRLP-KKDVVSWVALL 380



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 135/277 (48%), Gaps = 16/277 (5%)

Query: 253  FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
            + L  D  I      MY+    I +A  VF+++P      WN MI G    G+F  +L++
Sbjct: 746  YGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLEL 805

Query: 313  FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
            + +M   GLKPD F     L SCA +  L+ GK +H +L     + D F+  ALVDMYAK
Sbjct: 806  YSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAK 865

Query: 373  CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
            CG I+ A  VF  M  RD+ S+T+MI G A +G   + L  F  M   G+ P+ V+ + V
Sbjct: 866  CGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSV 925

Query: 433  LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH----YGCMVDLFGRAGLIREALDLIKSM 488
            L AC + G + +G     +    Y +Q   E        ++D++ + G    +LDL + +
Sbjct: 926  LLACGNLGALRKG-----EWFHSYVIQTGFEFDILVATAIMDMYSKCG----SLDLARCL 976

Query: 489  ---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
                   D   W A++ +  IH     A  + + +V+
Sbjct: 977  FDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVK 1013



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 77/195 (39%), Gaps = 28/195 (14%)

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           + + +G  P   T+ C   SC         K  H  +    +  D  I      MY    
Sbjct: 717 KYKTIGSAPGTDTISCF--SCL--------KKTHAKIFAYGLQYDSRILTKFAIMYVSFN 766

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           RID A  VF  +     + +  MI G A  G+   +L+++S+M + G++PD+  F   L 
Sbjct: 767 RIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALK 826

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR--------EALDLIK 486
           +C  AGL         D+ R   +       GC  DLF  A L+         EA  L+ 
Sbjct: 827 SC--AGLS--------DLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVF 876

Query: 487 SMPLVPDAFVWGALL 501
               V D   W +++
Sbjct: 877 DKMAVRDLVSWTSMI 891


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/502 (37%), Positives = 302/502 (60%), Gaps = 9/502 (1%)

Query: 82  QVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V  +N II   S     ++A+ ++R M+ +G+ PN+ T+  +L    +    ++G +VH
Sbjct: 306 NVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVH 365

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            +S+K A+ S+V++ N+L+ +YA  G  +    +F+        R++VSW  +I  + + 
Sbjct: 366 GFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFN----KMGVRNIVSWNAMIANFARN 421

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               EA+     M      P+ +    VL AC++LG L++G +IH  I       S D+F
Sbjct: 422 RLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARII--RVGSSLDLF 479

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           + NAL DMY KCG +  A+ VF+ + V++ VS+N +I G +      E+L +F  M+ LG
Sbjct: 480 VSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLG 538

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           ++PD  + + V+++CAN+ ++  GK +H  L +   +T  F+ N+L+D+Y +CGRID A 
Sbjct: 539 MRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLAT 598

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  ++ +DV S+  MI+G  + G+   A+++F  M + G+E D V+FV VLSACSH G
Sbjct: 599 KVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGG 658

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           L+E+G K+F  M  + N++P   HY CMVDL GRAGL+ EA DLI+ + ++PD  +WGAL
Sbjct: 659 LIEKGRKYFKMMCDL-NIEPTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGAL 717

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           LGAC+IH  +EL     E+L   +P+  G YIL++N+Y+   RW EA K+R+ MK R  K
Sbjct: 718 LGACRIHGNIELGLWAAEHLFELKPQHCGYYILLSNMYAEAERWDEANKVRELMKSRGAK 777

Query: 561 KTPGCSLVEVYGEFYEFRKGDK 582
           K PGCS V+V    + F  G+K
Sbjct: 778 KNPGCSWVQVGDLVHAFLVGEK 799



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 137/419 (32%), Positives = 216/419 (51%), Gaps = 14/419 (3%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENLSLQNPQV------YLYNF 88
           ++ Q KQ HA+ +  G       +    I+   S G+   +L L    V      +L+N 
Sbjct: 49  TLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNT 108

Query: 89  IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           +I+  S A   +    Y  M+  G+ P+  T P+VLK C     +R G++VH  + K   
Sbjct: 109 LIRANSIAGVFDGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGF 168

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             +V+V NTL+  Y  CGL     K+F        +RD VSW T+I       +  EA+ 
Sbjct: 169 DGDVFVGNTLLAFYGNCGLFGDAMKVFD----EMPERDKVSWNTVIGLCSLHGFYEEALG 224

Query: 209 SFFDMCQA--NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
            F  M  A   ++PD + +V VL  C++  D  +   +H Y       L   V + NAL+
Sbjct: 225 FFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGL-LGGHVKVGNALV 283

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           D+Y KCG+  +++KVFDE+  +NV+SWN++I   + RG++ +ALD+FR M   G++P+  
Sbjct: 284 DVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSV 343

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T+  +L     +G  +LG  VH +  K  I +D FI N+L+DMYAK G    A  +F  M
Sbjct: 344 TISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKM 403

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
             R++ S+ AMI   A +   ++A+++  +M   G  P+ VTF  VL AC+  G +  G
Sbjct: 404 GVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVG 462



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 185/402 (46%), Gaps = 35/402 (8%)

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLF 175
           T   P +L+ C    +L   +QVHAYS+    L  +V +  +L+  YA  G     + L 
Sbjct: 34  TSNPPNLLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFG--HPSNSLL 91

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD-------MCQANLRPDGMILVIV 228
            F+      R    W TLI+A         +I   FD       M +A ++PD      V
Sbjct: 92  LFQHSVAYSRSAFLWNTLIRA--------NSIAGVFDGFGTYNTMVRAGVKPDECTYPFV 143

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           L  CS   ++  G ++H       F+   DVF+ N L+  Y  CG    A KVFDEMP +
Sbjct: 144 LKVCSDFVEVRKGREVHGVAFKLGFD--GDVFVGNTLLAFYGNCGLFGDAMKVFDEMPER 201

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL--GLKPDDFTLVCVLNSCANIGWLELGKW 346
           + VSWN++I   +  G ++EAL  FR M     G++PD  T+V VL  CA      + + 
Sbjct: 202 DKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARI 261

Query: 347 VHTYLDK-----NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
           VH Y  K      H+     +GNALVD+Y KCG    +  VF  +  R+V S+ A+I   
Sbjct: 262 VHCYALKVGLLGGHVK----VGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSF 317

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQP 460
           +  GK   ALD+F  M   G+ P+ VT   +L      GL + G + H   +     ++ 
Sbjct: 318 SFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMA--IES 375

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
                  ++D++ ++G  R A  +   M  V +   W A++ 
Sbjct: 376 DVFISNSLIDMYAKSGSSRIASTIFNKMG-VRNIVSWNAMIA 416


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 207/621 (33%), Positives = 342/621 (55%), Gaps = 25/621 (4%)

Query: 3   SPLTVASGSRYNDINTFQQ-LSLLHQSPRLESS---KSVGQLKQFHAFIIKTG---SPQH 55
           SPL     S    I +FQQ  +L      L++S   K++ + K+ H++++  G   SP  
Sbjct: 15  SPLFFNFSSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLS 74

Query: 56  QTQI--LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKG 112
            T +  +Y K   ++    I +       V+ +N II   ++N  P E    Y++M  +G
Sbjct: 75  ITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEG 134

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           ++P+ +T P  +KAC     ++   ++H    K  L  +V++ + L+  Y   GL++  H
Sbjct: 135 VIPDKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLME--H 189

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
               F + P   RD+V W  ++  Y ++      + +F  M   ++ P    +  VLS  
Sbjct: 190 AQVAFEELPI--RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVF 247

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           + +GDL+ G  IH +     ++    V + N+LIDMY KC  I  A ++F+ M  K++ S
Sbjct: 248 AVMGDLNNGRIIHGFAMKMGYD--SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFS 305

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WNS+++     G     L +  RM G G++PD  T+  VL +C+++  L  G+ +H Y+ 
Sbjct: 306 WNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMI 365

Query: 353 KNHINTDG------FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
            + +  DG       + NA++DMYAKCG +  A  VF  M  +DV S+  MI+G  +HG 
Sbjct: 366 VSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGY 425

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
             +AL++FS M +V ++PDEVTFVGVLSACSHAG V +G    + M   Y++ P  EHY 
Sbjct: 426 GNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYT 485

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           C++D+ GRAG + EA +L  +MP+  +  VW ALL AC++H    LAE+  + +   EPE
Sbjct: 486 CVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPE 545

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
             G+Y+LM+N+Y +  R++E L++R  M+++ V+KTPGCS +E+    + F   D++HP+
Sbjct: 546 HCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPE 605

Query: 587 TLEIYKLLDEIMHQSKNHGYI 607
              IY  L+ +  + + HGY+
Sbjct: 606 AHSIYAGLNSLTARLREHGYV 626


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 323/602 (53%), Gaps = 62/602 (10%)

Query: 68  SRGNEIENLSLQNPQ--------VYLYNFIIQC-LSNANPLEAIALYREMLI------KG 112
           SR   +E+ SL   +        V  +N I+   +  +NP  A+ L+ EM          
Sbjct: 195 SRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATN 254

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK--- 169
              +  ++  +L AC   ++L   +++H+Y+++    ++ +V N L+  YA CG +K   
Sbjct: 255 ERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAV 314

Query: 170 ----------------------------AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
                                       A  +LF   +      D+++W+ +I  Y +  
Sbjct: 315 NVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRG 374

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY----------ITDN 251
           Y  EA+ +F  M      P+ + ++ +LSAC+ LG LS G++ H Y              
Sbjct: 375 YGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFG 434

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK--NVVSWNSMIAGLTHRGQFKEA 309
                 D+ +HNALIDMY KC +  +AR +F+ +P +  NVV+W  MI G    G   +A
Sbjct: 435 GDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDA 494

Query: 310 LDIFRRM--QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG--FIGNA 365
           L +F  M  +   + P+ +T+ C+L +CA++  L +GK +H Y+ ++H       F+ N 
Sbjct: 495 LKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANC 554

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           L+DMY+KCG +D A  VF SM  R+  S+T+M+ G  +HG+  +ALDIF +M + G  PD
Sbjct: 555 LIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPD 614

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
           +++F+ +L ACSH+G+V++G  +F  M   Y +    +HY C++DL  R+G + +A   I
Sbjct: 615 DISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTI 674

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
           + MP+ P A +W ALL AC++H+ VELAE  +  LV  + E DG+Y L++NIY++  RWK
Sbjct: 675 QEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWK 734

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           +  ++R+ MK+  +KK PGCS V+       F  GD+SHP + EIY LL+ ++ + K  G
Sbjct: 735 DVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMG 794

Query: 606 YI 607
           Y+
Sbjct: 795 YV 796



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 159/595 (26%), Positives = 266/595 (44%), Gaps = 91/595 (15%)

Query: 18  TFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS 77
           T + +S  H +  L+  +SV  ++Q H  II  G   +   +L   +  L   + +   S
Sbjct: 25  TGRDVSPTHFASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKS 84

Query: 78  L-------------------------QNPQVYLYNFIIQCLSNANPLE-AIALYREMLIK 111
           L                          +P V+ +N +++       L+ AI +   ML  
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVVPSPAVW-WNLLVRAHIEEGRLDRAIGVSCRMLRA 143

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           G  P+ +TLPY LKAC +  S R G   H         SNV+V N L+ +Y+  G ++  
Sbjct: 144 GTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDA 203

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ------ANLRPDGMIL 225
             +F      +   D++SW +++ A+VK   P  A+  F +M         N R D + +
Sbjct: 204 SLVFD-EITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISI 262

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
           V +L AC+ L  L    +IH Y   N      D F+ NALID Y KCG++  A  VF+ M
Sbjct: 263 VNILPACASLKALPQTKEIHSYAIRN--GTFADAFVCNALIDTYAKCGSMKDAVNVFNVM 320

Query: 286 PVKNVVSWNSMIAGLTHRGQF-----------------------------------KEAL 310
             K+VVSWN+M+ G T  G+F                                   +EAL
Sbjct: 321 EFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEAL 380

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI------------NT 358
           D F++M   G +P+  T++ +L++CA++G L  G   H Y  K  +              
Sbjct: 381 DTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSM--KCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
           D  + NAL+DMY+KC     A  +F S+  + R+V ++T MI G A +G +  AL +FSE
Sbjct: 441 DLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSE 500

Query: 417 M--SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG-CMVDLFG 473
           M      + P+  T   +L AC+H   +  G +    ++R +  +        C++D++ 
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYS 560

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR--FEPE 526
           + G +  A ++  SMP   +   W +++    +H + + A  + + + +  F P+
Sbjct: 561 KCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPD 614


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 202/610 (33%), Positives = 336/610 (55%), Gaps = 26/610 (4%)

Query: 17  NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQ----HQTQILYDKIISLSRGNE 72
           ++F  +S++     L   + +   KQ HA+ ++ G       +    +Y K+  L+    
Sbjct: 198 SSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKV 257

Query: 73  IENLSLQNPQVYLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
           +   S     +  +N ++  L  N   LEA+   REM+++G+ P+ +T+  VL AC   +
Sbjct: 258 LLG-SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLE 316

Query: 132 SLRVGQQVHAYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
            LR G+++HAY++K   L  N +V + L+ +Y  C  + +  ++F         R +  W
Sbjct: 317 MLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD----GMFDRKIGLW 372

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
             +I  Y + ++  EA+L F  M + A L  +   +  V+ AC + G  S    IH ++ 
Sbjct: 373 NAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV 432

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
                L  D F+ N L+DMY + G I  A ++F +M  +++V+WN+MI G       ++A
Sbjct: 433 KR--GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490

Query: 310 LDIFRRMQGL-----------GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           L +  +MQ L            LKP+  TL+ +L SCA +  L  GK +H Y  KN++ T
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           D  +G+ALVDMYAKCG +  +  VF  +  ++V ++  +I+   +HG   +A+D+   M 
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 610

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             G++P+EVTF+ V +ACSH+G+V+EG + F  M   Y ++P ++HY C+VDL GRAG I
Sbjct: 611 VQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRI 670

Query: 479 REALDLIKSMPL-VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
           +EA  L+  MP     A  W +LLGA +IH  +E+ EI  +NL++ EP     Y+L+ NI
Sbjct: 671 KEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANI 730

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           YSS   W +A ++R+ MKE+ V+K PGCS +E   E ++F  GD SHP++ ++   L+ +
Sbjct: 731 YSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETL 790

Query: 598 MHQSKNHGYI 607
             + +  GY+
Sbjct: 791 WERMRKEGYV 800



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/416 (30%), Positives = 208/416 (50%), Gaps = 31/416 (7%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL-LSNVYVFNTL 158
           EA+  Y +M++ G+ P+ Y  P +LKA    Q + +G+Q+HA+  K    + +V V NTL
Sbjct: 80  EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTL 139

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + LY  CG   AV+K+F       ++R+ VSW +LI +    +    A+ +F  M   N+
Sbjct: 140 VNLYRKCGDFGAVYKVF----DRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV 195

Query: 219 RPDGMILVIVLSACSKL---GDLSLGIKIHRY-ITDNHFNLSPDVFIHNALIDMYLKCGN 274
            P    LV V++ACS L     L +G ++H Y +     N     FI N L+ MY K G 
Sbjct: 196 EPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELN----SFIINTLVAMYGKLGK 251

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           + S++ +      +++V+WN++++ L    Q  EAL+  R M   G++PD+FT+  VL +
Sbjct: 252 LASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPA 311

Query: 335 CANIGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           C+++  L  GK +H Y  KN  ++ + F+G+ALVDMY  C ++     VF  M  R +  
Sbjct: 312 CSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL 371

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQ-VGIEPDEVTFVGVLSACSHAGLVEEG------- 445
           + AMI G + +    +AL +F  M +  G+  +  T  GV+ AC  +G            
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 431

Query: 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
            K  LD  R             ++D++ R G I  A+ +   M    D   W  ++
Sbjct: 432 VKRGLDRDRFVQ--------NTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMI 478



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 146/260 (56%), Gaps = 7/260 (2%)

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W  L+++ V+ +   EA+L++ DM    ++PD      +L A + L D+ LG +IH ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
              + +   V + N L+++Y KCG+  +  KVFD +  +N VSWNS+I+ L    +++ A
Sbjct: 125 KFGYGVD-SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE---LGKWVHTY-LDKNHINTDGFIGNA 365
           L+ FR M    ++P  FTLV V+ +C+N+   E   +GK VH Y L K  +N+  FI N 
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNS--FIINT 241

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           LV MY K G++  +  +  S   RD+ ++  ++  L  + +  +AL+   EM   G+EPD
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query: 426 EVTFVGVLSACSHAGLVEEG 445
           E T   VL ACSH  ++  G
Sbjct: 302 EFTISSVLPACSHLEMLRTG 321


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 213/568 (37%), Positives = 317/568 (55%), Gaps = 15/568 (2%)

Query: 41  KQFHAFIIKTGSPQHQT--QILYDKIISLSRGNEIENL--SLQNPQVYLYNFIIQCL-SN 95
           KQ HA I++ G     +   +L D  +   R      L   + N  +  +  ++     N
Sbjct: 269 KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQN 328

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           A   EA+ L+  M   GL P+ Y    +L +C    +L  G QVHAY++K  L ++ YV 
Sbjct: 329 ALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVT 388

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP---TEAILSFFD 212
           N+L+ +YA C  +    K+F       A  D+V +  +I+ Y ++       EA+  F D
Sbjct: 389 NSLIDMYAKCDCLTDARKVFDIF----AAADVVLFNAMIEGYSRLGTQWELHEALNIFRD 444

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M    +RP  +  V +L A + L  L L  +IH  +     NL  D+F  +ALID+Y  C
Sbjct: 445 MRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNL--DIFAGSALIDVYSNC 502

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
             +  +R VFDEM VK++V WNSM AG   + + +EAL++F  +Q    +PD+FT   ++
Sbjct: 503 YCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMV 562

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +  N+  ++LG+  H  L K  +  + +I NAL+DMYAKCG  + A   F S   RDV 
Sbjct: 563 TAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVV 622

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            + ++I   A HG+  KAL +  +M   GIEP+ +TFVGVLSACSHAGLVE+G K F  M
Sbjct: 623 CWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELM 682

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
            R + ++P+TEHY CMV L GRAG + +A +LI+ MP  P A VW +LL  C     VEL
Sbjct: 683 LR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVEL 741

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           AE   E  +  +P+  G++ +++NIY+SK  W EA K+R++MK   V K PG S + +  
Sbjct: 742 AEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINK 801

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
           E + F   DKSH K  +IY++LD+++ Q
Sbjct: 802 EVHIFLSKDKSHCKANQIYEVLDDLLVQ 829



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 146/518 (28%), Positives = 247/518 (47%), Gaps = 47/518 (9%)

Query: 79  QNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +   V     I  C+       ++ L+ +++   ++P+ Y L  VL AC     L  G+Q
Sbjct: 211 EKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQ 270

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +HA+ ++  L  +  + N L+  Y  CG + A HKLF    +    ++++SWTTL+  Y 
Sbjct: 271 IHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLF----NGMPNKNIISWTTLLSGYK 326

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +     EA+  F  M +  L+PD      +L++C+ L  L  G ++H Y      NL  D
Sbjct: 327 QNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKA--NLGND 384

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG---QFKEALDIFRR 315
            ++ N+LIDMY KC  +  ARKVFD     +VV +N+MI G +  G   +  EAL+IFR 
Sbjct: 385 SYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRD 444

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+   ++P   T V +L + A++  L L K +H  + K  +N D F G+AL+D+Y+ C  
Sbjct: 445 MRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYC 504

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +  +  VF  MK +D+  + +M  G     +  +AL++F E+      PDE TF  +++A
Sbjct: 505 LKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTA 564

Query: 436 CS-----------HAGLVEEG--CKHF-----LDMSRVYNLQPQTEH------------- 464
                        H  L++ G  C  +     LDM       P+  H             
Sbjct: 565 AGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCG-SPEDAHKAFDSAASRDVVC 623

Query: 465 YGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
           +  ++  +   G  ++AL +++ M    + P+   +  +L AC     VE      E ++
Sbjct: 624 WNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML 683

Query: 522 RF--EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           RF  EPE +  Y+ M ++     R  +A +L +KM  +
Sbjct: 684 RFGIEPETE-HYVCMVSLLGRAGRLNKARELIEKMPTK 720



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 162/302 (53%), Gaps = 9/302 (2%)

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           VH   +   L  + Y+ N L+ LY+  G +    K+F        +R+LVSW+T++ A  
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFE----KMPERNLVSWSTMVSACN 121

Query: 199 KMDYPTEAILSFFDMCQANL-RPDGMILVIVLSACSKLGDLS--LGIKIHRYITDNHFNL 255
                 E+++ F +  +     P+  IL   + ACS L      +  ++  ++  + F+ 
Sbjct: 122 HHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFD- 180

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             DV++   LID YLK GNI  AR VFD +P K+ V+W +MI+G    G+   +L +F +
Sbjct: 181 -RDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           +    + PD + L  VL++C+ + +LE GK +H ++ +  +  D  + N L+D Y KCGR
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +  A  +F  M  +++ S+T ++ G   +    +A+++F+ MS+ G++PD      +L++
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359

Query: 436 CS 437
           C+
Sbjct: 360 CA 361



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 135/261 (51%), Gaps = 9/261 (3%)

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           + L  D ++ N LI++Y + G +  ARKVF++MP +N+VSW++M++   H G ++E+L +
Sbjct: 73  WGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVV 132

Query: 313 FRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKW----VHTYLDKNHINTDGFIGNALV 367
           F    +     P+++ L   + +C+ +     G+W    + ++L K+  + D ++G  L+
Sbjct: 133 FLEFWRTRKDSPNEYILSSFIQACSGLD--GRGRWMVFQLQSFLVKSGFDRDVYVGTLLI 190

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           D Y K G ID A  VF ++  +   ++T MI G    G+++ +L +F ++ +  + PD  
Sbjct: 191 DFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGY 250

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
               VLSACS    +E G +    + R Y L+        ++D + + G +  A  L   
Sbjct: 251 ILSTVLSACSILPFLEGGKQIHAHILR-YGLEMDASLMNVLIDSYVKCGRVIAAHKLFNG 309

Query: 488 MPLVPDAFVWGALLGACKIHA 508
           MP   +   W  LL   K +A
Sbjct: 310 MP-NKNIISWTTLLSGYKQNA 329


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/596 (33%), Positives = 333/596 (55%), Gaps = 57/596 (9%)

Query: 22  LSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIEN--- 75
           +++ H    L S K++  L Q H   IK G         +++    IS+S          
Sbjct: 3   IAIHHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLL 62

Query: 76  LSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSL 133
           L    P  +++N +++  S ++ P  ++A++ EM+ KG + P++++  +V+KA    +SL
Sbjct: 63  LCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSL 122

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
           R G Q+H  ++K  L S+++V  TL+ +Y  CG ++   K+F     P    +LV+W   
Sbjct: 123 RTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQP----NLVAWNA- 177

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI-HRYITDNH 252
                                             V++AC +  D++   +I  + +  NH
Sbjct: 178 ----------------------------------VITACFRGNDVAGAREIFDKMLVRNH 203

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
            +        N ++  Y+K G + SA+++F EMP ++ VSW++MI G+ H G F E+   
Sbjct: 204 TSW-------NVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLY 256

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           FR +Q  G+ P++ +L  VL++C+  G  E GK +H +++K   +    + NAL+DMY++
Sbjct: 257 FRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSR 316

Query: 373 CGRIDQAFGVFRSMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           CG +  A  VF  M+  R + S+T+MI GLA+HG+  +A+ +F+EM+  G+ PD ++F+ 
Sbjct: 317 CGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFIS 376

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           +L ACSHAGL+EEG  +F +M RVY+++P+ EHYGCMVDL+GR+G +++A D I  MP+ 
Sbjct: 377 LLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIP 436

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P A VW  LLGAC  H  +ELAE V + L   +P   G  +L++N Y++  +WK+   +R
Sbjct: 437 PTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIR 496

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH-GY 606
           K M  +++KKT   SLVEV    Y+F  G+K     +E ++ L EI+ + K+  GY
Sbjct: 497 KSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGY 552


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/587 (33%), Positives = 329/587 (56%), Gaps = 57/587 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIEN---LSLQNPQVY 84
           L S K++  L Q H   IK G         +++    IS+S          L    P  +
Sbjct: 4   LNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAF 63

Query: 85  LYNFIIQCLSNAN-PLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           ++N +++  S ++ P  ++A++ EM+ KG + P++++  +V+KA    +SLR G Q+H  
Sbjct: 64  MFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQ 123

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
           ++K  L S+++V  TL+ +Y  CG ++   K+F     P    +LV+W            
Sbjct: 124 ALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQP----NLVAWNA---------- 169

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI-HRYITDNHFNLSPDVFI 261
                                    V++AC +  D++   +I  + +  NH +       
Sbjct: 170 -------------------------VITACFRGNDVAGAREIFDKMLVRNHTSW------ 198

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            N ++  Y+K G + SA+++F EMP ++ VSW++MI G+ H G F E+   FR +Q  G+
Sbjct: 199 -NVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGM 257

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
            P++ +L  VL++C+  G  E GK +H +++K   +    + NAL+DMY++CG +  A  
Sbjct: 258 SPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARL 317

Query: 382 VFRSMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
           VF  M+  R + S+T+MI GLA+HG+  +A+ +F+EM+  G+ PD ++F+ +L ACSHAG
Sbjct: 318 VFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAG 377

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           L+EEG  +F +M RVY+++P+ EHYGCMVDL+GR+G +++A D I  MP+ P A VW  L
Sbjct: 378 LIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTL 437

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           LGAC  H  +ELAE V + L   +P   G  +L++N Y++  +WK+   +RK M  +++K
Sbjct: 438 LGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIK 497

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH-GY 606
           KT   SLVEV    Y+F  G+K     +E ++ L EI+ + K+  GY
Sbjct: 498 KTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGY 544


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/582 (33%), Positives = 309/582 (53%), Gaps = 40/582 (6%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTY 118
           +Y K   +S   E+ +  +    V  +  IIQ  +    L EA  LY +ML  G+ PN  
Sbjct: 201 MYSKCGEISVACEVFH-KMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAV 259

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T   +L +C   ++L  G+++H++  +  L +++ V N L+ +Y  C  ++   ++F   
Sbjct: 260 TFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFD-- 317

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYP-TEAILSFFDMCQANLR----PDGMILVIVLSACS 233
               ++RD++SW+ +I  Y +  Y   E+I   F + +   R    P+ +  + +L AC+
Sbjct: 318 --RMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACT 375

Query: 234 KLGDLSLGIKIHRYITDNHFNL-----------------------------SPDVFIHNA 264
             G L  G +IH  ++   F L                             + +V    +
Sbjct: 376 AHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTS 435

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
            + MY+KCG++ SA KVF EMP +NVVSWN MIAG    G   +  ++   M+  G +PD
Sbjct: 436 FLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPD 495

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             T++ +L +C  +  LE GK VH    K  + +D  +  +L+ MY+KCG++ +A  VF 
Sbjct: 496 RVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFD 555

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            M  RD  ++ AM+ G   HG   +A+D+F  M +  + P+E+T   V+SACS AGLV+E
Sbjct: 556 KMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQE 615

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G + F  M   + + P+ +HYGCMVDL GRAG ++EA + I+SMP  PD  VW ALLGAC
Sbjct: 616 GREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGAC 675

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           K H  V+LAE    +++  EP     YI ++NIY+   RW ++ K+R+ M +R +KK  G
Sbjct: 676 KSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRG 735

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            S +E+ G  + F   D +HP+   I+  L+ +  + K  GY
Sbjct: 736 ESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGY 777



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 214/450 (47%), Gaps = 44/450 (9%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N +P +A   +  M    + PN  T   +LKAC     L  G+++H       + ++V V
Sbjct: 135 NNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAV 194

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
              L+ +Y+ CG I    ++F    H   +R++VSWT +IQA  +     EA   +  M 
Sbjct: 195 ATALITMYSKCGEISVACEVF----HKMTERNVVSWTAIIQANAQHRKLNEAFELYEQML 250

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           QA + P+ +  V +L++C+    L+ G +IH +I++    L  D+ + NALI MY KC +
Sbjct: 251 QAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISER--GLETDMIVANALITMYCKCNS 308

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRG-QFKEALD----IFRRMQGLGLKPDDFTLV 329
           +  AR++FD M  ++V+SW++MIAG    G + KE++D    +  RM+  G+ P+  T +
Sbjct: 309 VQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFM 368

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--- 386
            +L +C   G LE G+ +H  L K     D  +  A+ +MYAKCG I +A  VF  M   
Sbjct: 369 SILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK 428

Query: 387 -------------KC---------------RDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
                        KC               R+V S+  MI G A +G   K  ++ S M 
Sbjct: 429 NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMK 488

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             G +PD VT + +L AC     +E G     +  ++  L+  T     ++ ++ + G +
Sbjct: 489 AEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKL-GLESDTVVATSLIGMYSKCGQV 547

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHA 508
            EA  +   M    D   W A+L     H 
Sbjct: 548 AEARTVFDKMS-NRDTVAWNAMLAGYGQHG 576



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 213/407 (52%), Gaps = 13/407 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EAI L   +  +GLL N+ T   V++ C +++    G+ VH    +  +  ++Y+ N+L+
Sbjct: 39  EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLI 98

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
             Y+    + +  ++F         RD+V+W+++I AY   ++P +A  +F  M  AN+ 
Sbjct: 99  NFYSKFEDVASAEQVFR----RMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIE 154

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  + +L AC+    L  G KIH  +      +  DV +  ALI MY KCG I  A 
Sbjct: 155 PNRITFLSILKACNNYSILEKGRKIHTIV--KAMGMETDVAVATALITMYSKCGEISVAC 212

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +VF +M  +NVVSW ++I       +  EA +++ +M   G+ P+  T V +LNSC    
Sbjct: 213 EVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPE 272

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L  G+ +H+++ +  + TD  + NAL+ MY KC  + +A  +F  M  RDV S++AMI 
Sbjct: 273 ALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIA 332

Query: 400 GLAIHG-KAWKALD----IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           G A  G K  +++D    +   M + G+ P++VTF+ +L AC+  G +E+G +   ++S+
Sbjct: 333 GYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSK 392

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           V   +        + +++ + G I EA  +   M    +   W + L
Sbjct: 393 V-GFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFL 437



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 176/371 (47%), Gaps = 41/371 (11%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           V+  C+K      G  +H+ +  +   +  D+++ N+LI+ Y K  ++ SA +VF  M +
Sbjct: 62  VIEHCAKARRFEDGKMVHKQL--DELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTL 119

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           ++VV+W+SMIA         +A D F RM    ++P+  T + +L +C N   LE G+ +
Sbjct: 120 RDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKI 179

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           HT +    + TD  +  AL+ MY+KCG I  A  VF  M  R+V S+TA+I   A H K 
Sbjct: 180 HTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKL 239

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGLVEEG----------- 445
            +A +++ +M Q GI P+ VTFV +L++C+           H+ + E G           
Sbjct: 240 NEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANAL 299

Query: 446 ------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGL-----IREALDLIKSM---P 489
                 C    +   +++   + +   +  M+  + ++G      I E   L++ M    
Sbjct: 300 ITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREG 359

Query: 490 LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY-ILMTNIYSSKNRWKEAL 548
           + P+   + ++L AC  H  +E    +   L +   E D +    + N+Y+      EA 
Sbjct: 360 VFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAE 419

Query: 549 KLRKKMKERKV 559
           ++  KM  + V
Sbjct: 420 QVFSKMANKNV 430



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 2/223 (0%)

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           L   G+ +EA+ +   ++  GL  +  T  CV+  CA     E GK VH  LD+  +  D
Sbjct: 31  LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEID 90

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            ++GN+L++ Y+K   +  A  VFR M  RDV ++++MI   A +    KA D F  M+ 
Sbjct: 91  IYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTD 150

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             IEP+ +TF+ +L AC++  ++E+G +    + +   ++        ++ ++ + G I 
Sbjct: 151 ANIEPNRITFLSILKACNNYSILEKG-RKIHTIVKAMGMETDVAVATALITMYSKCGEIS 209

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
            A ++   M    +   W A++ A   H K+  A  + E +++
Sbjct: 210 VACEVFHKMT-ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQ 251


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/565 (34%), Positives = 319/565 (56%), Gaps = 11/565 (1%)

Query: 44  HAFIIKTGSPQH---QTQILYDKIISLSRGNEIENLSLQNP--QVYLYNFIIQCLSNANP 98
           HA ++K+    +   QT  + D  +   R  +  N+ ++ P   +  +N ++   + +  
Sbjct: 76  HAHVLKSCFQSNIFVQTATV-DMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGF 134

Query: 99  LEAIA-LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           L+ ++ L R M + G+ P+  T+  ++ +  + +SL     V+++ ++  +  +V V NT
Sbjct: 135 LDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANT 194

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+  Y+ CG + +   LF   +     R +VSW ++I AY   +   +A+  +  M    
Sbjct: 195 LIAAYSKCGNLCSAETLFD--EINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGG 252

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
             PD   ++ +LS+C +   L  G+ +H +          DV + N LI MY KCG++ S
Sbjct: 253 FSPDISTILNLLSSCMQPKALFHGLLVHSHGVK--LGCDSDVCVVNTLICMYSKCGDVHS 310

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           AR +F+ M  K  VSW  MI+    +G   EA+ +F  M+  G KPD  T++ +++ C  
Sbjct: 311 ARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQ 370

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
            G LELGKW+  Y   N +  +  + NAL+DMYAKCG  + A  +F +M  R V S+T M
Sbjct: 371 TGALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTM 430

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I   A++G    AL++F  M ++G++P+ +TF+ VL AC+H GLVE G + F  M++ Y 
Sbjct: 431 ITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYG 490

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           + P  +HY CMVDL GR G +REAL++IKSMP  PD+ +W ALL ACK+H K+E+ + V 
Sbjct: 491 INPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVS 550

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           E L   EP+    Y+ M NIY+S   W+    +R+ MK  +V+K+PG S+++V G+   F
Sbjct: 551 EQLFELEPQVAVPYVEMANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVNGKPTIF 610

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSK 602
              D+ HP+TL IY +LD +  +SK
Sbjct: 611 TVEDRDHPETLYIYDMLDGLTSRSK 635



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 216/423 (51%), Gaps = 26/423 (6%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+ L+R+M   G+ PN  T P+VLKAC +   LR  Q +HA+ +K+   SN++V    + 
Sbjct: 37  ALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHVLKSCFQSNIFVQTATVD 96

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y  CG ++  H +  F + P   RD+ SW  ++  + +  +          M  + +RP
Sbjct: 97  MYVKCGRLEDAHNV--FVEMP--VRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRP 152

Query: 221 DGMILVIVLSACSKLGDL-------SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
           D + +++++ +  ++  L       S GI+I  ++         DV + N LI  Y KCG
Sbjct: 153 DAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHM---------DVSVANTLIAAYSKCG 203

Query: 274 NIPSARKVFDEM--PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           N+ SA  +FDE+   +++VVSWNSMIA   +  +  +A++ ++ M   G  PD  T++ +
Sbjct: 204 NLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNL 263

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L+SC     L  G  VH++  K   ++D  + N L+ MY+KCG +  A  +F  M  +  
Sbjct: 264 LSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTC 323

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            S+T MI   A  G   +A+ +F+ M   G +PD VT + ++S C   G +E G   ++D
Sbjct: 324 VSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELG--KWID 381

Query: 452 MSRVYN-LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
              + N L+        ++D++ + G   +A +L  +M        W  ++ AC ++  V
Sbjct: 382 NYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMA-NRTVVSWTTMITACALNGDV 440

Query: 511 ELA 513
           + A
Sbjct: 441 KDA 443



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 160/365 (43%), Gaps = 41/365 (11%)

Query: 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
           L +W +  +  V   +   A++ F  M Q+ + P+      VL AC+KL  L     IH 
Sbjct: 18  LFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHA 77

Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
           ++  + F    ++F+  A +DMY+KCG +  A  VF EMPV+++ SWN+M+ G    G  
Sbjct: 78  HVLKSCFQ--SNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFL 135

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
                + R M+  G++PD  T++ +++S   +  L     V+++  +  ++ D  + N L
Sbjct: 136 DRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTL 195

Query: 367 VDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
           +  Y+KCG +  A  +F  +    R V S+ +MI   A   K  KA++ +  M   G  P
Sbjct: 196 IAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSP 255

Query: 425 DEVTFVGVLSAC-----------SHAGLVEEGCKHFLDMSRVYNLQPQTEHYG------- 466
           D  T + +LS+C            H+  V+ GC    D+  V  L       G       
Sbjct: 256 DISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDS--DVCVVNTLICMYSKCGDVHSARF 313

Query: 467 --------------CMVDLFGRAGLIREALDLIKSMPLV---PDAFVWGALLGACKIHAK 509
                          M+  +   G + EA+ L  +M      PD     AL+  C     
Sbjct: 314 LFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGA 373

Query: 510 VELAE 514
           +EL +
Sbjct: 374 LELGK 378


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 186/458 (40%), Positives = 274/458 (59%), Gaps = 12/458 (2%)

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           NV  +  ++  YA    ++A  + F        +R +VSW  ++  Y +     EA+  F
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDC----MPERSVVSWNAMLSGYAQNGLAEEALRLF 248

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
            +M  A + PD    V V+SACS  GD  L   + R +      L  + F+  AL+DMY 
Sbjct: 249 DEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQL--NCFVRTALLDMYA 306

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLV 329
           K G++ SARK+F+ MP +NVV+WNSMIAG    GQ   A+++F+ M     L PD+ T+V
Sbjct: 307 KFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMV 366

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            V+++C ++G LELG WV  +L +N I       NA++ MY++CG ++ A  VF+ M  R
Sbjct: 367 SVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 426

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           DV SY  +I G A HG   +A+++ S M + GIEPD VTF+GVL+ACSHAGL+EEG K F
Sbjct: 427 DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVF 486

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
             +       P  +HY CMVDL GR G + +A   ++ MP+ P A V+G+LL A +IH +
Sbjct: 487 ESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQ 541

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           VEL E+    L   EP+  G +IL++NIY+S  RWK+  ++R+ MK+  VKKT G S VE
Sbjct: 542 VELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 601

Query: 570 VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             G+ ++F   D+SH ++ +IY+LL E+  + +  GYI
Sbjct: 602 YGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYI 639



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 149/281 (53%), Gaps = 11/281 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+ EM+  G+ P+  T   V+ AC       +   +     +  +  N +V   L+
Sbjct: 243 EALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALL 302

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA-NL 218
            +YA  G + +  KLF    +    R++V+W ++I  Y +      AI  F +M  A  L
Sbjct: 303 DMYAKFGDLDSARKLF----NTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKL 358

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            PD + +V V+SAC  LG L LG  + R++T+N   LS  +  HNA+I MY +CG++  A
Sbjct: 359 TPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLS--ISGHNAMIFMYSRCGSMEDA 416

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           ++VF EM  ++VVS+N++I+G    G   EA+++   M+  G++PD  T + VL +C++ 
Sbjct: 417 KRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHA 476

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G LE G+ V   +    I+        +VD+  + G ++ A
Sbjct: 477 GLLEEGRKVFESIKDPAIDHYA----CMVDLLGRVGELEDA 513



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/520 (24%), Positives = 220/520 (42%), Gaps = 119/520 (22%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA----VHKLFHFRQHPQAQRDLVSWTT 192
           +Q+HA  +  +L  + Y    L+     C  ++A     H LF+   +P    ++  +T+
Sbjct: 18  RQLHAQIIHNSLHHHNYWVALLINH---CTRLRAPPHYTHLLFNSTLNP----NVFVFTS 70

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           +++ Y  +    + +L +  M    +RPD  +  I++ +       + GI  H ++    
Sbjct: 71  MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLK-- 123

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDE---------------------------- 284
                D F+ NA+IDMY + G I  ARKVFDE                            
Sbjct: 124 LGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQ 183

Query: 285 -----MPVKNVVSW-------------------------------NSMIAGLTHRGQFKE 308
                MP +NV++W                               N+M++G    G  +E
Sbjct: 184 WLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEE 243

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           AL +F  M   G++PD+ T V V+++C++ G   L   +   L +  I  + F+  AL+D
Sbjct: 244 ALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLD 303

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEV 427
           MYAK G +D A  +F +M  R+V ++ +MI G A +G++  A+++F EM +   + PDEV
Sbjct: 304 MYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEV 363

Query: 428 TFVGVLSACSHAGLVEEG----------------------------CKHFLDMSRVYNLQ 459
           T V V+SAC H G +E G                            C    D  RV+   
Sbjct: 364 TMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 423

Query: 460 PQTE--HYGCMVDLFGRAGLIREALDLIKSMP---LVPDAFVWGALLGACKIHAKVELAE 514
              +   Y  ++  F   G   EA++L+ +M    + PD   +  +L AC     +E   
Sbjct: 424 ATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGR 483

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            V E++   +P  D  Y  M ++       ++A +  ++M
Sbjct: 484 KVFESIK--DPAID-HYACMVDLLGRVGELEDAKRTMERM 520



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 13/231 (5%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLI-KGLLPNT 117
           +Y K   L    ++ N ++    V  +N +I   + N     AI L++EM+  K L P+ 
Sbjct: 304 MYAKFGDLDSARKLFN-TMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDE 362

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
            T+  V+ AC    +L +G  V  +  +  +  ++   N ++ +Y+ CG ++   ++F  
Sbjct: 363 VTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVF-- 420

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
                A RD+VS+ TLI  +    +  EAI     M +  + PD +  + VL+ACS  G 
Sbjct: 421 --QEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGL 478

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           L  G K+   I D      P +  +  ++D+  + G +  A++  + MP++
Sbjct: 479 LEEGRKVFESIKD------PAIDHYACMVDLLGRVGELEDAKRTMERMPME 523


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 211/591 (35%), Positives = 332/591 (56%), Gaps = 62/591 (10%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQ----ILYDKIISLSRGNEIENL---SLQNPQV 83
           L+  KS+ +L+Q HA +IKT    HQ      I +  +  +S G +  +     +Q+P  
Sbjct: 13  LDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNS 72

Query: 84  YLYNFIIQCLSN-ANPLEAIALYREML--IKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           +++  +I+  S+ +NP+E++ LY  ML  +       +++P VLKAC +  +   G+QVH
Sbjct: 73  FIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVH 132

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              +KT L  + +V N+++R+Y   G I+   ++F         RD+VSW ++I  Y+K 
Sbjct: 133 GQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFD----RMPNRDVVSWNSMIAGYLKA 188

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
                                              G++ L  ++   + +       D+ 
Sbjct: 189 -----------------------------------GEIELASELFDEMPER------DLV 207

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
             NA+ID Y KCG    A KVF+ M  K+VV+W SMI+         +ALD+FR M  LG
Sbjct: 208 SCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLG 267

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN-TDGFIGNALVDMYAKCGRIDQA 379
           L+PD   +V VL++ A++G++E GKW+H Y+  N I  + GFIG+AL+DMY+KCG I+ A
Sbjct: 268 LRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENA 327

Query: 380 FGVFRSMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           + VFRS+   R++  + +MI GLAIHG A +ALDIF EM ++ IEP+E+TF+G+LS CSH
Sbjct: 328 YHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSH 387

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
            GLVEEG  +F  M   Y + P+ +HYGCM+DLFGRAG + +AL +I++MP   D   W 
Sbjct: 388 GGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWK 447

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
           A+L A   H  +E+ +      +   P+   +Y+L++NIY+   RW +  K+R  M++R 
Sbjct: 448 AILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRG 507

Query: 559 VKKTPGCSLVEVYGEFYEFRKG---DKSHPKTLEIYKLLDEIMHQSKNHGY 606
           VKK  GCS + V G+ +EF  G   D S+  + ++   + E++ + K  GY
Sbjct: 508 VKKIAGCSSMLVBGKVHEFLXGKELDSSY--SGQVLAKIAEVVSRLKLQGY 556



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 119/276 (43%), Gaps = 18/276 (6%)

Query: 225 LVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
           +V VL  C  L +L    +IH + I  N  N    V    A   +    G +  A  VF 
Sbjct: 9   VVSVLDKCKSLCELR---QIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFS 65

Query: 284 EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG-LGLKPD-DFTLVCVLNSCANIGWL 341
            +   N   + ++I G +      E+L ++ RM   L      +F++  VL +C  +   
Sbjct: 66  RIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAF 125

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
           + G+ VH  + K H+  D F+GN++V MY   G I+ A  VF  M  RDV S+ +MI G 
Sbjct: 126 DEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGY 185

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
              G+   A ++F EM     E D V+   ++      G  E   K F  MS        
Sbjct: 186 LKAGEIELASELFDEMP----ERDLVSCNAMIDGYGKCGRCELAEKVFETMS-----DKD 236

Query: 462 TEHYGCMVDLFGRAGLIREALDLIK---SMPLVPDA 494
              +  M+  + +     +ALDL +   S+ L PD 
Sbjct: 237 VVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDG 272


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/582 (34%), Positives = 326/582 (56%), Gaps = 58/582 (9%)

Query: 35  KSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIENLSLQ---NPQVYLYNF 88
           KS+   KQ HA ++K G    P    ++L+   ISLS   +      +   NP V+++N 
Sbjct: 16  KSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNT 75

Query: 89  IIQCLSNAN-PLEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           +I+ L  ++ P +++  + EM      P ++++  +++KA    +S+RVG Q+H  ++  
Sbjct: 76  LIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVH 135

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            L ++++V  TL+ +Y  CG +    K+F     P A    ++W  ++            
Sbjct: 136 GLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNA----IAWNAMV------------ 179

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP--DVFIHNA 264
                                  +AC + GD+  G ++        F+L P  ++   N 
Sbjct: 180 -----------------------TACCRGGDMKGGREL--------FDLMPVRNLMSWNV 208

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           ++  Y K G +  AR++F EMP+K+ VSW++MI G  H G F+EA   FR +Q  G++P+
Sbjct: 209 MLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPN 268

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF- 383
           + +L  VL++CA  G LE GK +H +++K+ +     + NAL+D Y+KCG +  A  VF 
Sbjct: 269 ETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFE 328

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
           R M  R++ S+T+M+  LA+HG   +A+ IF +M + GI PDE+ F+ +L ACSHAGLVE
Sbjct: 329 RIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVE 388

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           +GC++F  M  +YN++P  EHYGCMVDL+GRAG +++A + +  MP+   A +W  LLGA
Sbjct: 389 QGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGA 448

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C +H  V+LAE V E L   +P     ++L++N Y+   +WK+A  +R+ M E+++ KTP
Sbjct: 449 CSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTP 508

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           G S++EV    Y F  G K +  T E YK L EI+ + +  G
Sbjct: 509 GWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEG 550



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 8/177 (4%)

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA--KCGRIDQAFGVFRSMKC 388
           +LN C +   L   K +H  + K  + +D FI   L+   A      +D A  +FR    
Sbjct: 11  LLNICKS---LTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPN 67

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE-PDEVTFVGVLSACSHAGLVEEGCK 447
            DV+ +  +I GL    +   +L  F EM +     PD  +F  ++ A ++   V  G +
Sbjct: 68  PDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQ 127

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
                + V+ L         ++ ++G  G +  A  +   MP  P+A  W A++ AC
Sbjct: 128 LHCQ-ALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMP-EPNAIAWNAMVTAC 182


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 207/626 (33%), Positives = 342/626 (54%), Gaps = 33/626 (5%)

Query: 3   SPLTVASGSRYNDINTFQQLSL---------LHQSPRLES--------SKSVGQLKQFHA 45
           S  T+ SG   N +NT + LSL         LH  P + S        + SV   +  H 
Sbjct: 34  SWTTIISG-YVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKACGLNMSVSFGESLHG 92

Query: 46  FIIKTG--SPQHQTQILYDKIISLSRGNE----IENLSLQNPQVYLYNFIIQCLSNAN-P 98
           + +KT   +       L D  + + + +E     + + L+N  V  +  II  L  A   
Sbjct: 93  YSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRN--VVSWTAIIAGLVRAGYN 150

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
            EA+A + +M I+ +  +TYT    LKAC  S +L  G+++H  ++K    +  +V NTL
Sbjct: 151 KEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTL 210

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
             +Y  CG +    +LF        QRD+VSWTT+I + V++     A+ +F  M + ++
Sbjct: 211 ATMYNKCGKLDYGLRLFE----SMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDV 266

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            P+      V+S C+ LG +  G ++H ++      L   + + N+++ MY KC  +  A
Sbjct: 267 SPNEFTFAAVISGCATLGRIEWGEQLHAHVIRR--GLVDSLSVANSIMAMYSKCWQLDLA 324

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
             VF  +  ++++SW++MI+G    G  +EA D    M+  G +P++F    VL+ C N+
Sbjct: 325 STVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNM 384

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             LE GK +H ++    +  +  + +AL++MY+KCG I +A  +F   +  ++ S+TAMI
Sbjct: 385 AILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMI 444

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G A HG + +A+D+F ++ +VG+ PD VTF+ VL+ACSHAGLV+ G  +F  +S+V+ +
Sbjct: 445 NGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQI 504

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P  +HYGCM+DL  RAG + +A  +I+SMP   D  VW  LL AC+IH  V+  +   E
Sbjct: 505 CPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAE 564

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            +++ +P     +I + N+Y++K +WKEA ++RK MK + V K PG S ++       F 
Sbjct: 565 KILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFV 624

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNH 604
            GD+SHP+   IY +LD +  Q++ H
Sbjct: 625 SGDRSHPEGEYIYDVLDLLASQAEMH 650



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/263 (38%), Positives = 137/263 (52%), Gaps = 3/263 (1%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGI 242
           QRD +SWTT+I  YV     TEA+  F  M  +  L  D  IL + L AC     +S G 
Sbjct: 29  QRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKACGLNMSVSFGE 88

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            +H Y     F  S  VF+ +AL+DMY+K G +     VF EMP++NVVSW ++IAGL  
Sbjct: 89  SLHGYSVKTDFVNS--VFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVR 146

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
            G  KEAL  F  M    +  D +T    L +CA+ G L  G+ +H    K       F+
Sbjct: 147 AGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFV 206

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
            N L  MY KCG++D    +F SM  RDV S+T +I+     G+   A+  F  M +  +
Sbjct: 207 ANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDV 266

Query: 423 EPDEVTFVGVLSACSHAGLVEEG 445
            P+E TF  V+S C+  G +E G
Sbjct: 267 SPNEFTFAAVISGCATLGRIEWG 289



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 137/303 (45%), Gaps = 52/303 (17%)

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GLGL 321
           N ++   +K G++ +AR++FD+M  ++ +SW ++I+G  +     EAL +F +M    GL
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
             D F L   L +C     +  G+ +H Y  K       F+G+ALVDMY K G++D+   
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF+ M  R+V S+TA+I GL   G   +AL  FS+M    +  D  TF   L AC+ +G 
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGA 184

Query: 442 VEEG----C----KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP---- 489
           +  G    C    K F  +S V N          +  ++ + G +   L L +SM     
Sbjct: 185 LNYGREIHCQTLKKGFTAVSFVANT---------LATMYNKCGKLDYGLRLFESMTQRDV 235

Query: 490 ------------------------------LVPDAFVWGALLGACKIHAKVELAEIVMEN 519
                                         + P+ F + A++  C    ++E  E +  +
Sbjct: 236 VSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAH 295

Query: 520 LVR 522
           ++R
Sbjct: 296 VIR 298


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 184/489 (37%), Positives = 279/489 (57%), Gaps = 35/489 (7%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+ ++   +  L + +    ++   AV       H    F   P+  R    W T+++A
Sbjct: 30  KQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPR--RTSFIWNTMLRA 87

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH----------- 245
           +     P   +  +  M      P+      +L AC++L DLS GI +H           
Sbjct: 88  FTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAY 147

Query: 246 --------------------RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
                               R + D   N   DV    A+I+ Y K G +  AR++FDEM
Sbjct: 148 DFVQNGLLHLYASCNCMDSARRLFDGSVN--RDVVTWTAVINGYAKSGQVVVARQLFDEM 205

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
           P KN VSW++MI G    G F+EAL++F  MQ  G +P+   +V  L +CA +G L+ G+
Sbjct: 206 PEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGR 265

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
           W+H Y+D+N +  D  +G AL+DMYAKCG ++ A  VF  M  RDV+++T++I GLA HG
Sbjct: 266 WIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHG 325

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
            +  A+++F+ M   G+ P+EVTF+ +LSACS  GLVEEG + F  M+ +Y ++P  +HY
Sbjct: 326 HSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHY 385

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
           GC+VDL GRAG++ +A  +++ MPL PD++V GALL AC++H  VEL +  +E L     
Sbjct: 386 GCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSL 445

Query: 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585
           +  G ++L++N+Y+S N+W++  K+RK M+E+KVKK PGCSL+EV G  +EF  GD SH 
Sbjct: 446 DHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHV 505

Query: 586 KTLEIYKLL 594
              EI  LL
Sbjct: 506 FMDEIVLLL 514



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 183/366 (50%), Gaps = 44/366 (12%)

Query: 76  LSLQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
           LSL     +++N +++  ++   P   ++LY+ ML  G LPN YT  ++L+AC Q   L 
Sbjct: 71  LSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLS 130

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH------------------ 176
            G  +HA +++    +  +V N L+ LYA C  + +  +LF                   
Sbjct: 131 FGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYA 190

Query: 177 -----------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
                      F + P  +++ VSW+ +I  Y ++    EA+  F DM  A  RP+   +
Sbjct: 191 KSGQVVVARQLFDEMP--EKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAI 248

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
           V  L+AC+ LG L  G  IH Y+  N   L  D  +  ALIDMY KCG + +A +VFDEM
Sbjct: 249 VGALTACAFLGALDQGRWIHAYVDRNRMVL--DRILGTALIDMYAKCGCVETACRVFDEM 306

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             ++V ++ S+I+GL + G    A+++F RMQ  G+ P++ T +C+L++C+ +G +E G 
Sbjct: 307 LDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGL 366

Query: 346 WVHTYLDKNHINTDGFIG-----NALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIV 399
            +     K+  N  G          LVD+  + G ++ A  V R M    D Y   A++ 
Sbjct: 367 RIF----KSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLN 422

Query: 400 GLAIHG 405
              +HG
Sbjct: 423 ACRVHG 428



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 132/292 (45%), Gaps = 40/292 (13%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+ +M I G  PN   +   L AC    +L  G+ +HAY  +  ++ +  +   L+
Sbjct: 228 EALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALI 287

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG ++   ++F         RD+ ++T+LI       +   AI  F  M    + 
Sbjct: 288 DMYAKCGCVETACRVF----DEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVC 343

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  + +LSACS++G +  G++I + +T N + + P V  +  L+D+  + G +  A+
Sbjct: 344 PNEVTFICLLSACSRVGLVEEGLRIFKSMT-NIYGIEPVVQHYGCLVDLLGRAGMLEDAK 402

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +V  EMP                                  L+PD + L  +LN+C   G
Sbjct: 403 RVVREMP----------------------------------LEPDSYVLGALLNACRVHG 428

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
            +ELGK     L +  ++  G +   L +MYA   + +    V + M+ + V
Sbjct: 429 DVELGKETVECLAERSLDHGG-VHVLLSNMYASANQWEDVAKVRKGMEEKKV 479


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/510 (37%), Positives = 299/510 (58%), Gaps = 14/510 (2%)

Query: 99  LEAIALY---REMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           LE + L+   RE  +    P+  T+  V+ AC      R+G++VH Y +KT  ++ V V 
Sbjct: 278 LEGLRLFFMMREFFVD---PDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVN 334

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N+L+++++  G       +F   +     +DLVSWT +I  Y K   P +A+ ++  M  
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEF----KDLVSWTAMISGYEKNGLPEKAVETYTIMEH 390

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             + PD + +  VLSAC+ LG L  GI +H +   +   L+  V + N+LIDMY KC  I
Sbjct: 391 EGVVPDEITIASVLSACAGLGLLDKGIMLHEFA--DRTGLTSYVIVANSLIDMYSKCRCI 448

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A +VF  +P KNV+SW S+I GL    +  EAL  F++M  L LKP+  TLV VL++C
Sbjct: 449 DKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSAC 507

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A IG L  GK +H +  +  +  DGF+ NAL+DMY +CGR++ A+  F S + +DV S+ 
Sbjct: 508 ARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWN 566

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
            ++ G A  GK   A+++F +M +  + PDE+TF  +L ACS +G+V +G ++F  M   
Sbjct: 567 ILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHK 626

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           +++ P  +HY  +VDL GRAG + +A + IK MP+ PD  +WGALL AC+I+  VEL E+
Sbjct: 627 FHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGEL 686

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             +++   + +  G YIL+ N+Y+   +W E  ++RK M+E ++   PGCS VEV G+ +
Sbjct: 687 AAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVH 746

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
            F  GD  HP+  EI  +L+    + +  G
Sbjct: 747 AFLTGDDFHPQIKEINAVLEGFYEKMEATG 776



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 223/444 (50%), Gaps = 20/444 (4%)

Query: 53  PQHQTQILYDKIISLSRGNEIE-----NLSLQNPQVYLYNFIIQCLSNANPLEAIALYRE 107
           P + ++ +  + ISL + +EI      +++ QNP     + I++     +  +A+     
Sbjct: 29  PLNFSRNIQTRQISLRKHHEISVLNPSSITAQNPN----SLILELCLKGDLEKALIHLDS 84

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           M    +     T   +L+ C   ++   G +VH+Y  KT     V + N L+ ++   G 
Sbjct: 85  MQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGD 144

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           +     +F       A+RDL SW  L+  Y K  Y  EA+  +  M    +RPD      
Sbjct: 145 LVEAWYVFG----KMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPC 200

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL  C  L DL+ G ++H ++    +    DV + NALI MY+KCG+I SAR VFD MP 
Sbjct: 201 VLRTCGGLPDLARGREVHLHVI--RYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPR 258

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           ++ +SWN+MI+G        E L +F  M+   + PD  T+  V+++C  +G   LG+ V
Sbjct: 259 RDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H Y+ K     +  + N+L+ M++  G  D+A  VF  M+ +D+ S+TAMI G   +G  
Sbjct: 319 HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLP 378

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC--KHFLDMSRVYNLQPQTEHY 465
            KA++ ++ M   G+ PDE+T   VLSAC+  GL+++G     F D +    L       
Sbjct: 379 EKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRT---GLTSYVIVA 435

Query: 466 GCMVDLFGRAGLIREALDLIKSMP 489
             ++D++ +   I +AL++   +P
Sbjct: 436 NSLIDMYSKCRCIDKALEVFHRIP 459


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 204/567 (35%), Positives = 317/567 (55%), Gaps = 18/567 (3%)

Query: 17  NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGN 71
           N    +SLL  S  LE  +     ++ H + +K G     T        Y K  S+    
Sbjct: 260 NLVSVISLLPISAALEDEE---MTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALW 316

Query: 72  EIENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQS 130
           ++ N +++  +V  +N II  L+      +A+  +R M+  G  PN+ T+  +L    + 
Sbjct: 317 QVFNETVEKNEVS-WNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVEL 375

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
           +  + G+++H +SM+    +++++ N+L+ +YA  G       +FH       +R++VSW
Sbjct: 376 ECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFH----NLDRRNIVSW 431

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
             +I  Y     P EAI     M +    P+ +    VL AC++LG L  G +IH     
Sbjct: 432 NAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHA--MG 489

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
               L+ D+F+ N+LIDMY KCG + SAR VF+    K+ VS+N +I G +      ++L
Sbjct: 490 VRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSL 548

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           ++F  M+ LG KPD  + V V+++CAN+  L+ GK VH    +NH+ +  F+ N+L+D Y
Sbjct: 549 NLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFY 608

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
            KCGRID A  +F  +  +DV S+  MI+G  + G+   A+ +F  M    ++ D V+++
Sbjct: 609 TKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYI 668

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
            VLSACSH GLVE G ++F +M     L+P   HY CMVDL GRAG + EA  LI+ +P+
Sbjct: 669 AVLSACSHGGLVERGWQYFSEM-LAQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPI 727

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            PDA +WGALLGAC+I+  VEL     E+L   +P+  G YIL++NIY+   RW EA K+
Sbjct: 728 APDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKI 787

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEF 577
           R+ MK R  KK PGCS V++Y + + F
Sbjct: 788 RELMKSRGAKKNPGCSWVQIYDQVHAF 814



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/463 (29%), Positives = 228/463 (49%), Gaps = 17/463 (3%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGN------EIENLSLQNPQV-YLYN 87
           +S+ Q KQ HA  I  G       +    I++ ++         + N + QN +  +L+N
Sbjct: 68  QSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQNCRTAFLWN 127

Query: 88  FIIQCLSNA--NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
            +I+  S A     +    Y  M+ +G+  + +T P+VLK C  S  +  G +VH    K
Sbjct: 128 TLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFK 187

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY-VKMDYPT 204
               ++VYV NTL+ LY  CG +    +LF        +RD+VSW T+I    V  DY  
Sbjct: 188 LGFDTDVYVGNTLLMLYGNCGFLNDARRLF----DEMPERDVVSWNTIIGLLSVNGDYTE 243

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
                F+ + ++ ++P+ + ++ +L   + L D  +  +IH Y       L   V   NA
Sbjct: 244 ARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSV--KVGLDSQVTTCNA 301

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L+D Y KCG++ +  +VF+E   KN VSWNS+I GL  +G+  +AL+ FR M   G +P+
Sbjct: 302 LVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPN 361

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             T+  +L     +   + GK +H +  +    TD FI N+L+DMYAK G   +A  +F 
Sbjct: 362 SVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFH 421

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
           ++  R++ S+ AMI   A++    +A+    +M + G  P+ VTF  VL AC+  G +  
Sbjct: 422 NLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGP 481

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           G K    M     L         ++D++ + G +  A ++  +
Sbjct: 482 G-KEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT 523



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 180/366 (49%), Gaps = 16/366 (4%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           +L  C + QSL   +QVHA  +    L  +V +  +L+  YA      +   LF+  Q  
Sbjct: 60  LLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFN--QTF 117

Query: 182 QAQRDLVSWTTLIQAY-VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
           Q  R    W TLI+A+ +  +   +   ++  M +  ++ D      VL  CS   D+  
Sbjct: 118 QNCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICK 177

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G+++H  +    F+   DV++ N L+ +Y  CG +  AR++FDEMP ++VVSWN++I  L
Sbjct: 178 GMEVHGVVFKLGFD--TDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLL 235

Query: 301 THRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           +  G + EA + +  M     +KP+  +++ +L   A +   E+ + +H Y  K  +++ 
Sbjct: 236 SVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQ 295

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
               NALVD Y KCG +   + VF     ++  S+ ++I GLA  G+ W AL+ F  M  
Sbjct: 296 VTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMID 355

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH----YGCMVDLFGRA 475
            G +P+ VT   +L       LVE  C         ++++  TE        ++D++ ++
Sbjct: 356 AGAQPNSVTISSILPV-----LVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKS 410

Query: 476 GLIREA 481
           G   EA
Sbjct: 411 GHSTEA 416


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 186/475 (39%), Positives = 289/475 (60%), Gaps = 12/475 (2%)

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC--GLIKAVHKLFHFRQHPQAQRDLVS 189
           S+   +Q HA  ++T LL N    + L+   A+   G +    KLF   Q+P    D   
Sbjct: 23  SISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNP----DPFI 78

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
             T+I+ Y +   P EA+  ++ M +  +  D      VL+AC++LG + LG + H  + 
Sbjct: 79  CNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVL 138

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
            N F    D+F+ NALI  Y  CG+   A  VFDE  V++VV+WN MI    ++G  ++A
Sbjct: 139 KNGF--GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKA 196

Query: 310 LDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKWVHTY---LDKNHINTDGFIGNA 365
            D+   M  L  L+PD+ T+V ++ +CA +G LE GK++H+Y   LDK  IN D  +  A
Sbjct: 197 FDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETA 256

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           LVDMYAKCG ID A  VFR M+ R+V+++ A+I GLA+HG    A+ +F +M    + PD
Sbjct: 257 LVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPD 316

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
           +VTF+ +L ACSHAGLV+EG   F  M   + ++P+ EHYGC+VDL  RA  + +AL  I
Sbjct: 317 DVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFI 376

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
           ++MP+  ++ +W  LLGAC+     +LAE +   ++  EP+  G Y++++N+Y+  ++W 
Sbjct: 377 ENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWD 436

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
            ALKLRK+MK + ++KTPGCS +E+ G  ++F  GD+SH +T +IY +++E+  +
Sbjct: 437 HALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRR 491



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 217/405 (53%), Gaps = 25/405 (6%)

Query: 36  SVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIEN-----LSLQNPQVYLYN 87
           S+ + KQ HA +++T    +P   ++++    ++LS   ++         +QNP  ++ N
Sbjct: 23  SISKTKQAHALLLRTHLLHNPLFSSKLI--SFLALSHSGDLNYARKLFTQMQNPDPFICN 80

Query: 88  FIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
            +I+  + + NP EA++LY  M+ +G+  + YT P+VL AC +  ++++G++ H   +K 
Sbjct: 81  TMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKN 140

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
              S+++V N L++ Y  CG       +F         RD+V+W  +I A++      +A
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVF----DESTVRDVVTWNIMINAHLNKGLSEKA 196

Query: 207 ILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD-NHFNLSPDVFIHNA 264
                +M +  NLRPD + +V ++ AC++LG+L  G  +H Y  + + F ++ D+ +  A
Sbjct: 197 FDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETA 256

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L+DMY KCG+I  A +VF  M V+NV +WN++I GL   G  ++A+ +F +M+   L PD
Sbjct: 257 LVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPD 316

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCGRIDQAFGV 382
           D T + +L +C++ G ++ G  +   + KN    +  + +   +VD+  +  ++D A   
Sbjct: 317 DVTFIALLCACSHAGLVDEGLAMFQAM-KNKFQIEPRMEHYGCVVDLLCRARKVDDALAF 375

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ--VGIEPD 425
             +M  +      A ++G    G  +   D+  ++ +  + +EPD
Sbjct: 376 IENMPIKANSVLWATLLGACRSGGHF---DLAEKIGRRVIELEPD 417


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 194/572 (33%), Positives = 322/572 (56%), Gaps = 13/572 (2%)

Query: 41  KQFHAFIIKTG---SP--QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQC-LS 94
            Q H  +I  G    P   +    +Y K   LS   ++ N ++ +  V  +N +I   + 
Sbjct: 93  NQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFN-TMPDTNVVTWNGMIAGFVQ 151

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    EA  L+ EM+  G+ P++ T    L +  +S SL+ G+++H Y ++  +  +V++
Sbjct: 152 NGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFL 211

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +Y  C  +    K+F          D+V  T +I  YV      +A+  F  + 
Sbjct: 212 KSALIDIYFKCRDVGMACKIFK----QSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLL 267

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  + P+ + L  VL AC+ L  L+LG ++H  I  +   L     + +A++DMY KCG 
Sbjct: 268 EEKMSPNAVTLASVLPACAGLATLNLGKELHANILKH--GLDERRHVGSAIMDMYAKCGR 325

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A ++F  MP K+ V WN++I   +  G+ +EA+D+FR+M   GL  D  ++   L++
Sbjct: 326 LDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSA 385

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CAN+  L  GK +H+++ K   +++ F  +AL+DMY KCG +  A  VF  M+ ++  S+
Sbjct: 386 CANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSW 445

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            ++I     HG    +L +F +M + GI+PD VTF+ +LSAC HAG V++G ++F  M+ 
Sbjct: 446 NSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTE 505

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y +  + EHY C+VDLFGRAG + EA + IK+MP  PD  VWG LLGAC++H  VELAE
Sbjct: 506 EYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAE 565

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
           +    L+  +PE  G Y+L++N+++   +W    K+R  MK+R V+K PG S +EV    
Sbjct: 566 VASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTT 625

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           + F   D SHP++ +IY +L+ ++ + +  GY
Sbjct: 626 HMFVAADGSHPESAQIYSVLNNLLLELRKEGY 657



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 217/433 (50%), Gaps = 19/433 (4%)

Query: 85  LYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           + N  ++C     P  A+ ++ +M      PN+ T   VL  C        G Q+H   +
Sbjct: 44  MLNGFVKC---GEPNSAVKVFEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVI 100

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
                 +  V N L+ +Y+  G +    KLF    +     ++V+W  +I  +V+  +  
Sbjct: 101 SCGFHFDPLVANALVAMYSKFGQLSDALKLF----NTMPDTNVVTWNGMIAGFVQNGFMD 156

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EA L F +M  A + PD +     L + ++   L  G +IH YI  +   L  DVF+ +A
Sbjct: 157 EASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIAL--DVFLKSA 214

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LID+Y KC ++  A K+F +    ++V   ++I+G    G   +AL+IFR +    + P+
Sbjct: 215 LIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPN 274

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             TL  VL +CA +  L LGK +H  + K+ ++    +G+A++DMYAKCGR+D A+ +FR
Sbjct: 275 AVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFR 334

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            M  +D   + A+I   + +GK  +A+D+F +M + G+  D V+    LSAC++   +  
Sbjct: 335 RMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHH 394

Query: 445 G-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG---LIREALDLIKSMPLVPDAFVWGAL 500
           G   H   +   ++ +   E    ++D++G+ G   + R   D+++    V     W ++
Sbjct: 395 GKAIHSFMIKGAFDSEVFAE--SALIDMYGKCGNLSVARCVFDMMREKNEVS----WNSI 448

Query: 501 LGACKIHAKVELA 513
           + A   H  +E++
Sbjct: 449 IAAYGSHGHLEVS 461



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 176/369 (47%), Gaps = 24/369 (6%)

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           +V ++L++LYA  G I+   +LF         +D V W  ++  +VK   P  A+  F D
Sbjct: 8   FVGSSLIKLYAENGCIEDARRLFD----KMPNKDCVLWNVMLNGFVKCGEPNSAVKVFED 63

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M     +P+ +    VLS C+       G ++H  +    F+  P   + NAL+ MY K 
Sbjct: 64  MRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDP--LVANALVAMYSKF 121

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G +  A K+F+ MP  NVV+WN MIAG    G   EA  +F  M   G+ PD  T    L
Sbjct: 122 GQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFL 181

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            S      L+ GK +H Y+ ++ I  D F+ +AL+D+Y KC  +  A  +F+     D+ 
Sbjct: 182 PSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIV 241

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------- 445
             TA+I G  ++G    AL+IF  + +  + P+ VT   VL AC+    +  G       
Sbjct: 242 VCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANI 301

Query: 446 CKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
            KH LD  R         H G  ++D++ + G +  A  + + MP   DA  W A++  C
Sbjct: 302 LKHGLDERR---------HVGSAIMDMYAKCGRLDLAYQIFRRMP-EKDAVCWNAIITNC 351

Query: 505 KIHAKVELA 513
             + K + A
Sbjct: 352 SQNGKPQEA 360



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 159/341 (46%), Gaps = 40/341 (11%)

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           FN+  D F+ ++LI +Y + G I  AR++FD+MP K+ V WN M+ G    G+   A+ +
Sbjct: 3   FNV--DEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F  M+    KP+  T   VL+ CA+    E G  +H  +     + D  + NALV MY+K
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
            G++  A  +F +M   +V ++  MI G   +G   +A  +FSEM   G+ PD +TF   
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 433 LSACSHAGLVEEG----------------------------CKHFLDMSRVYNLQPQTEH 464
           L + + +  +++G                            C+      +++      + 
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240

Query: 465 YGCMVDLFGRA--GLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
             C   + G    GL  +AL++ + +    + P+A    ++L AC   A + L + +  N
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHAN 300

Query: 520 LVRF---EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           +++    E    G+ I+  ++Y+   R   A ++ ++M E+
Sbjct: 301 ILKHGLDERRHVGSAIM--DMYAKCGRLDLAYQIFRRMPEK 339


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 185/510 (36%), Positives = 293/510 (57%), Gaps = 7/510 (1%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           +++L+ EM  +G+ PN +T    LKAC    +L  G Q+H + +K      V V N+L+ 
Sbjct: 454 SLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVD 513

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL-- 218
           +Y+ CG I    K+F +       R L+SW  +I  YV   Y + A+ +F  M +A +  
Sbjct: 514 MYSKCGRINEAEKVFRW----MVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKE 569

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           RPD   L  +L ACS  G +  G +IH ++  + F+      I  +L+D+Y+KCGN+ SA
Sbjct: 570 RPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSA 629

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           RK FD++  K ++SW+S+I G    G F EA+ +F+R+Q L  + D F L  ++   A+ 
Sbjct: 630 RKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADF 689

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             L+ GK +   + K     +  + N+LVDMY KCG +D+A   F  M+ +DV S+T MI
Sbjct: 690 ALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMI 749

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G   HG   KA+ IF++M +  IEPDEV ++ VLSACSH+G+++EG + F  +     +
Sbjct: 750 TGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGI 809

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +P+ EHY C+VDL GRAG ++EA  L+ +MP+ P+  +W  LL  C++H  +EL + V +
Sbjct: 810 KPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGK 869

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            L+R + +    Y++M+N+Y     W E    R+    + ++K  G S VE+  E + FR
Sbjct: 870 ILLRIDGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIEREVHFFR 929

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNH-GYI 607
            G+ SHP TL I + L E+  + +   GY+
Sbjct: 930 SGEDSHPLTLVIQETLKEVERRLREELGYV 959



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 197/413 (47%), Gaps = 13/413 (3%)

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           N+   N L+ +Y  C      +K+F        +R++VSWT L+  +V       ++  F
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFD----SMPERNVVSWTALMSGHVLNGDLNGSLSLF 458

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
            +M +  + P+       L AC  L  L  G++IH +     F +  +V   N+L+DMY 
Sbjct: 459 TEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEV--GNSLVDMYS 516

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK--PDDFTL 328
           KCG I  A KVF  M  ++++SWN+MIAG  H G    AL  F  MQ   +K  PD+FTL
Sbjct: 517 KCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTL 576

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKN--HINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
             +L +C++ G +  GK +H +L ++  H  +   I  +LVD+Y KCG +  A   F  +
Sbjct: 577 TSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQI 636

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
           K + + S++++I+G A  G   +A+ +F  + ++  + D      ++   +   L+++G 
Sbjct: 637 KEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQG- 695

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           K    +        +T     +VD++ + GL+ EA      M L  D   W  ++     
Sbjct: 696 KQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQL-KDVISWTVMITGYGK 754

Query: 507 HAKVELAEIVMENLVRFEPEGDG-AYILMTNIYSSKNRWKEALKLRKKMKERK 558
           H   + A  +   ++R   E D   Y+ + +  S     KE  +L  K+ E +
Sbjct: 755 HGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQ 807



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 137/263 (52%), Gaps = 13/263 (4%)

Query: 248 ITDNHFNLSP---DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
            T+++F LS    ++   N LIDMY KC     A KVFD MP +NVVSW ++++G    G
Sbjct: 390 FTNSNFRLSGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNG 449

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
               +L +F  M   G+ P++FT    L +C  +  LE G  +H +  K        +GN
Sbjct: 450 DLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGN 509

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE- 423
           +LVDMY+KCGRI++A  VFR M  R + S+ AMI G    G   +AL  F  M +  I+ 
Sbjct: 510 SLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKE 569

Query: 424 -PDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI--- 478
            PDE T   +L ACS  G++  G + H   +   ++        G +VDL+ + G +   
Sbjct: 570 RPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSA 629

Query: 479 REALDLIKSMPLVPDAFVWGALL 501
           R+A D IK   ++     W +L+
Sbjct: 630 RKAFDQIKEKTMIS----WSSLI 648


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 190/507 (37%), Positives = 298/507 (58%), Gaps = 8/507 (1%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           LE + L+  M    + P+  T+  V+ AC      R+G++VH Y +KT  ++ V V N+L
Sbjct: 278 LEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSL 337

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           +++++  G       +F   +     +DLVSWT +I  Y K   P +A+ ++  M    +
Sbjct: 338 IQMHSSVGCWDEAEMVFSKMEF----KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGV 393

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            PD + +  VLSAC+ LG L  GI +H +   +   L+  V + N+LIDMY KC  I  A
Sbjct: 394 VPDEITIASVLSACAGLGLLDKGIMLHEFA--DRTGLTSYVIVANSLIDMYSKCRCIDKA 451

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
            +VF  +P KNV+SW S+I GL    +  EAL  F++M  L LKP+  TLV VL++CA I
Sbjct: 452 LEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARI 510

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G L  GK +H +  +  +  DGF+ NAL+DMY +CGR++ A+  F S + +DV S+  ++
Sbjct: 511 GALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILL 569

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G A  GK   A+++F +M +  + PDE+TF  +L ACS +G+V +G ++F  M   +++
Sbjct: 570 TGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHI 629

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P  +HY  +VDL GRAG + +A + IK MP+ PD  +WGALL AC+I+  VEL E+  +
Sbjct: 630 APNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQ 689

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
           ++   + +  G YIL+ N+Y+   +W E  ++RK M+E ++   PGCS VEV G+ + F 
Sbjct: 690 HIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFL 749

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHG 605
            GD  HP+  EI  +L+    + +  G
Sbjct: 750 TGDDFHPQIKEINAVLEGFYEKMEATG 776



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 193/369 (52%), Gaps = 11/369 (2%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+ C   ++   G +VH+Y  KT     V + N L+ ++   G +     +F       
Sbjct: 100 LLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFG----KM 155

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
           A+RDL SW  L+  Y K  Y  EA+  +  M    +RPD      VL  C  L DL+ G 
Sbjct: 156 AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGR 215

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           ++H ++    +    DV + NALI MY+KCG+I SAR VFD MP ++ +SWN+MI+G   
Sbjct: 216 EVHLHVI--RYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFE 273

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
                E L +F  M+   + PD  T+  V+++C  +G   LG+ VH Y+ K     +  +
Sbjct: 274 NDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSV 333

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
            N+L+ M++  G  D+A  VF  M+ +D+ S+TAMI G   +G   KA++ ++ M   G+
Sbjct: 334 NNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGV 393

Query: 423 EPDEVTFVGVLSACSHAGLVEEGC--KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
            PDE+T   VLSAC+  GL+++G     F D +    L         ++D++ +   I +
Sbjct: 394 VPDEITIASVLSACAGLGLLDKGIMLHEFADRT---GLTSYVIVANSLIDMYSKCRCIDK 450

Query: 481 ALDLIKSMP 489
           AL++   +P
Sbjct: 451 ALEVFHRIP 459


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 211/615 (34%), Positives = 340/615 (55%), Gaps = 60/615 (9%)

Query: 3   SPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYD 62
           SP +++   +     +F+Q +LL+   R+++  ++ +L    A +IKT + Q     L  
Sbjct: 119 SPPSISMPLQPPSCPSFKQ-TLLN---RIKNCSTINELHGLCASMIKTNAIQDC--FLVH 172

Query: 63  KIISLSRG-NEIEN-----LSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKG-LL 114
           + IS S   N +         ++NP V++YN +I+       P  A+  Y  ML +  +L
Sbjct: 173 QFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVL 232

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P +YT   ++KAC    ++ +GQ VH +  K    S+++V                    
Sbjct: 233 PTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFV-------------------- 272

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
                           T L+  Y K++  +EA   F +MC+     D      ++SA ++
Sbjct: 273 ---------------QTALVDFYSKLEILSEARKVFDEMCER----DAFAWTAMVSALAR 313

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           +GD+    K+   + +       +    N +ID Y + GN+ SA  +F++MP K+++SW 
Sbjct: 314 VGDMDSARKLFEEMPER------NTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWT 367

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           +MI   +   Q+++AL I+  M+  G+ PD+ T+  V ++CA+IG LELGK +H Y+   
Sbjct: 368 TMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQ 427

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            +N D +IG+ALVDMYAKCG +D +  +F  +  +++Y + A+I GLA+HG A KAL +F
Sbjct: 428 GLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMF 487

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           + M +  I P+ VTF+ +LSAC+HAGLV+EG   FL M+R Y+++P   HYGCMVD+  +
Sbjct: 488 AIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSK 547

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           +G + EAL+LIKSM   P++ +WGALL  CK+H   E+AE  +E L+  EP   G Y L+
Sbjct: 548 SGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLL 607

Query: 535 TNIYSSKNRWKEALKLRKKMKERKV-KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
            ++Y+ +  W E   +R  MKE+ V KK PG S +E+ G  ++F     SHP + +IY +
Sbjct: 608 VSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFV 667

Query: 594 LDEIMHQSKNHGYIL 608
           L E+  Q K  GYIL
Sbjct: 668 LTELDGQLKLAGYIL 682


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 184/489 (37%), Positives = 279/489 (57%), Gaps = 35/489 (7%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+ ++   +  L + +    ++   AV       H    F   P+  R    W T+++A
Sbjct: 5   KQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPR--RTSFIWNTMLRA 62

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH----------- 245
           +     P   +  +  M      P+      +L AC++L DLS GI +H           
Sbjct: 63  FTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAY 122

Query: 246 --------------------RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
                               R + D   N   DV    A+I+ Y K G +  AR++FDEM
Sbjct: 123 DFVQNGLLHLYASCNCMDSARRLFDGSVN--RDVVTWTAVINGYAKSGQVVVARQLFDEM 180

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
           P KN VSW++MI G    G F+EAL++F  MQ  G +P+   +V  L +CA +G L+ G+
Sbjct: 181 PEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGR 240

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
           W+H Y+D+N +  D  +G AL+DMYAKCG ++ A  VF  M  RDV+++T++I GLA HG
Sbjct: 241 WIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHG 300

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
            +  A+++F+ M   G+ P+EVTF+ +LSACS  GLVEEG + F  M+ +Y ++P  +HY
Sbjct: 301 HSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHY 360

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
           GC+VDL GRAG++ +A  +++ MPL PD++V GALL AC++H  VEL +  +E L     
Sbjct: 361 GCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSL 420

Query: 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585
           +  G ++L++N+Y+S N+W++  K+RK M+E+KVKK PGCSL+EV G  +EF  GD SH 
Sbjct: 421 DHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHV 480

Query: 586 KTLEIYKLL 594
              EI  LL
Sbjct: 481 FMDEIVLLL 489



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 183/366 (50%), Gaps = 44/366 (12%)

Query: 76  LSLQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
           LSL     +++N +++  ++   P   ++LY+ ML  G LPN YT  ++L+AC Q   L 
Sbjct: 46  LSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLS 105

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH------------------ 176
            G  +HA +++    +  +V N L+ LYA C  + +  +LF                   
Sbjct: 106 FGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYA 165

Query: 177 -----------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
                      F + P  +++ VSW+ +I  Y ++    EA+  F DM  A  RP+   +
Sbjct: 166 KSGQVVVARQLFDEMP--EKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAI 223

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
           V  L+AC+ LG L  G  IH Y+  N   L  D  +  ALIDMY KCG + +A +VFDEM
Sbjct: 224 VGALTACAFLGALDQGRWIHAYVDRNRMVL--DRILGTALIDMYAKCGCVETACRVFDEM 281

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             ++V ++ S+I+GL + G    A+++F RMQ  G+ P++ T +C+L++C+ +G +E G 
Sbjct: 282 LDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGL 341

Query: 346 WVHTYLDKNHINTDGFIG-----NALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIV 399
            +     K+  N  G          LVD+  + G ++ A  V R M    D Y   A++ 
Sbjct: 342 RIF----KSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLN 397

Query: 400 GLAIHG 405
              +HG
Sbjct: 398 ACRVHG 403



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 132/292 (45%), Gaps = 40/292 (13%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+ +M I G  PN   +   L AC    +L  G+ +HAY  +  ++ +  +   L+
Sbjct: 203 EALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALI 262

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG ++   ++F         RD+ ++T+LI       +   AI  F  M    + 
Sbjct: 263 DMYAKCGCVETACRVF----DEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVC 318

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  + +LSACS++G +  G++I + +T N + + P V  +  L+D+  + G +  A+
Sbjct: 319 PNEVTFICLLSACSRVGLVEEGLRIFKSMT-NIYGIEPVVQHYGCLVDLLGRAGMLEDAK 377

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +V  EMP                                  L+PD + L  +LN+C   G
Sbjct: 378 RVVREMP----------------------------------LEPDSYVLGALLNACRVHG 403

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
            +ELGK     L +  ++  G +   L +MYA   + +    V + M+ + V
Sbjct: 404 DVELGKETVECLAERSLDHGG-VHVLLSNMYASANQWEDVAKVRKGMEEKKV 454


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 188/517 (36%), Positives = 290/517 (56%), Gaps = 45/517 (8%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQ---------VHAYSMKTALLSNVYVFNTLMRLYAVC 165
           PN+ + P  LK+  Q Q + + Q+         +HA  ++     + ++   L+R  + C
Sbjct: 35  PNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKC 94

Query: 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
             I    ++F +  +P    ++  +T LI  +V      EAI  +  M   ++ PD  ++
Sbjct: 95  HAIDYASRIFQYTHNP----NVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLM 150

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
             +L AC     L  G ++H          S +  +   ++++Y KCG +  AR+VF+EM
Sbjct: 151 ASILKACGSQLALREGREVHSRALK--LGFSSNRLVRLRIMELYGKCGELGDARRVFEEM 208

Query: 286 PV------------------------------KNVVSWNSMIAGLTHRGQFKEALDIFRR 315
           P                               K+ V W +MI G     +   AL+ FR 
Sbjct: 209 PEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRG 268

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           MQG  ++P++FT+VCVL++C+ +G LE+G+WVH+Y+ K  I  + F+GNAL++MY++CG 
Sbjct: 269 MQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGS 328

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           ID+A  VF  MK RDV +Y  MI GL+++GK+ +A+++F  M    + P  VTFVGVL+A
Sbjct: 329 IDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNA 388

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           CSH GLV+ G + F  M+R Y ++PQ EHYGCMVDL GR G + EA DLI++M + PD  
Sbjct: 389 CSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHI 448

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           + G LL ACK+H  +EL E V + L        G Y+L++++Y+S  +WKEA ++R KMK
Sbjct: 449 MLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMK 508

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           E  ++K PGCS +EV  E +EF  GD  HP+   IY+
Sbjct: 509 EAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYE 545



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/392 (31%), Positives = 215/392 (54%), Gaps = 40/392 (10%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS-----LQNPQVYL 85
           L+ S+ + Q+   HA +I+ G  Q    ++++ + S S+ + I+  S       NP VYL
Sbjct: 56  LQRSRHINQVLPIHAQLIRNGHSQDPF-MVFELLRSCSKCHAIDYASRIFQYTHNPNVYL 114

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           Y  +I   +S+ N LEAI LY  ML + +LP+ Y +  +LKAC    +LR G++VH+ ++
Sbjct: 115 YTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRAL 174

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ---------------------- 182
           K    SN  V   +M LY  CG +    ++F   + P+                      
Sbjct: 175 KLGFSSNRLVRLRIMELYGKCGELGDARRVFE--EMPEDVVASTVMISSYSDQGLVEEAG 232

Query: 183 ------AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
                  ++D V WT +I  +V+ +    A+ +F  M   N+RP+   +V VLSACS+LG
Sbjct: 233 AVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG 292

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
            L +G  +H Y+    F +  ++F+ NALI+MY +CG+I  A+ VFDEM  ++V+++N+M
Sbjct: 293 ALEIGRWVHSYM--RKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 350

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNH 355
           I+GL+  G+ ++A+++FR M G  L+P + T V VLN+C++ G ++ G +  H+      
Sbjct: 351 ISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYR 410

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           +         +VD+  + GR+++A+ + R+MK
Sbjct: 411 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMK 442


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 199/543 (36%), Positives = 308/543 (56%), Gaps = 19/543 (3%)

Query: 78  LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +    VY +N II   + + + L+A+  +  M    L PN  T P  +K+C     L  G
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAG 105

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+H  +      S+++V + L+ +Y+ CG +    KLF   + P+  R++VSWT++I  
Sbjct: 106 KQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFD--EIPE--RNVVSWTSMISG 161

Query: 197 YVKMDYPTEAILSFFDMCQAN-----------LRPDGMILVIVLSACSKLGDLSLGIKIH 245
           YV+ +   EA+  F +    +           +  D ++L  V+SAC+++   S+   +H
Sbjct: 162 YVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVH 221

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
                  F     + + N L+D Y KCG I  +RKVFD M   +V SWNS+IA     G 
Sbjct: 222 GLAVKKGFEGC--LAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGL 279

Query: 306 FKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
             EA  +F  M   G ++ +  TL  VL +CA+ G L++GK +H  + K  +  +  +G 
Sbjct: 280 SVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGT 339

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
           ++VDMY KCGR++ A   F  +K ++V S+T M+ G  +HG   +A+ +F EM + GI+P
Sbjct: 340 SIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKP 399

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           + +TFV VL+ACSHAGL++EG   F  M   ++++P  EHY CMVDL GRAG ++EA  L
Sbjct: 400 NYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGL 459

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
           I+ M + PD  VWG+LLGAC+IH  VEL EI    L + +P   G Y+L++NIY+   RW
Sbjct: 460 IQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRW 519

Query: 545 KEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
            +  ++R  MK   + KTPG S+VE  G  + F  GDK HP+  +IY+ LDE+  + +  
Sbjct: 520 DDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEV 579

Query: 605 GYI 607
           GY+
Sbjct: 580 GYM 582


>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
          Length = 545

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 200/502 (39%), Positives = 287/502 (57%), Gaps = 39/502 (7%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNT-LMRLYAVCGLIKAVHKLFHFRQHPQAQRDL 187
           Q +++R  Q++HA ++   L  N    +  + R YA  G      +LF    HP    D+
Sbjct: 29  QCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFDEIPHP----DI 84

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
           +S+T+L+  ++K+D+  +AI  F     +  RPDG   V  LSA   LGD  +G  +H  
Sbjct: 85  ISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGL 144

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD------------------------ 283
           I      L  ++ + NAL+DMY +CG    AR VFD                        
Sbjct: 145 IF--RCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVD 202

Query: 284 -------EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
                  +MP+K+ VSW ++I G     Q  +AL++F +M   G +P+  T+V VL++CA
Sbjct: 203 SALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACA 262

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           +IG L+LG+ +H Y  K++  T+  + NAL+DMYAK G I  AF VF  ++ +D +++T 
Sbjct: 263 DIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTT 322

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           MI    + G   KA+++F +M + GI P+ VTFV VLSACSHAGL++EG + F  M  VY
Sbjct: 323 MISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVY 382

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
           ++ P+ EHYGCMVDL GR GL+ EA  LI  M + PD  +W +LL AC  H    LAEI 
Sbjct: 383 HIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIA 442

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            + +++ EP  DG Y+L+ N+Y+  NRWKEAL +RK+M  RK+ K PGCS +EV G  +E
Sbjct: 443 GKEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIEVDGVVHE 502

Query: 577 FRKGDKSHPKTLEIYKLLDEIM 598
           F   DKSH    EIY  L EIM
Sbjct: 503 FLVEDKSHDARREIYVTL-EIM 523



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 190/412 (46%), Gaps = 41/412 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQI---LYDKIISLSRGNEIENL--SLQNPQVYL 85
           L   K++ +L++ HA  +  G   +Q  I   ++       R  +   L   + +P +  
Sbjct: 27  LTQCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFDEIPHPDIIS 86

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +  ++   L   +  +AI+++   +  G  P+ +     L A       R+G  VH    
Sbjct: 87  FTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIF 146

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH---------------------------- 176
           +  L S + V N L+ +Y  CG  +    +F                             
Sbjct: 147 RCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALS 206

Query: 177 -FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
            F Q P   +  VSWT LI  +V+   P +A+  F  M     RP+ + +V VLSAC+ +
Sbjct: 207 FFYQMPM--KSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADI 264

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
           G L LG  IH Y + +  N + ++ + NAL+DMY K G+I SA  VF+E+ +K+  +W +
Sbjct: 265 GALDLGRAIHGYGSKS--NATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTT 322

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-N 354
           MI+  T +G  ++A+++F  M   G+ P+  T V VL++C++ G ++ G+ +   + +  
Sbjct: 323 MISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVY 382

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
           HI+        +VD+  + G +++A  +   M    D+  + +++     HG
Sbjct: 383 HIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHG 434


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 189/517 (36%), Positives = 291/517 (56%), Gaps = 45/517 (8%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQ---------VHAYSMKTALLSNVYVFNTLMRLYAVC 165
           PN+ + P  LK+  Q Q + + Q+         +HA  ++     + ++   L+R  + C
Sbjct: 35  PNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKC 94

Query: 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
             I    ++F +  +P    ++  +T LI  +V      +AI  +  M   ++ PD  ++
Sbjct: 95  HAIDYASRIFQYTHNP----NVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLM 150

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
             +L AC     L  G ++H         LS +  +   ++++Y KCG +  AR+VF+EM
Sbjct: 151 ASILKACGSQLALREGREVHSRALK--LGLSSNRLVRLRIMELYGKCGELGDARRVFEEM 208

Query: 286 PV------------------------------KNVVSWNSMIAGLTHRGQFKEALDIFRR 315
           P                               K+ V W +MI G     +   AL+ FR 
Sbjct: 209 PEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRG 268

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           MQG  ++P++FT+VCVL++C+ +G LE+G+WVH+Y+ K  I  + F+GNAL++MY++CG 
Sbjct: 269 MQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGS 328

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           ID+A  VF  MK RDV +Y  MI GL+++GK+ +A+++F  M    + P  VTFVGVL+A
Sbjct: 329 IDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNA 388

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           CSH GLV+ G K F  M+R Y ++PQ EHYGCMVDL GR G + EA DLI++M + PD  
Sbjct: 389 CSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHI 448

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           + G LL ACK+H  +EL E V + L        G Y+L++++Y+S  +WKEA ++R KMK
Sbjct: 449 MLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMK 508

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           E  ++K PGCS +EV  E +EF  GD  HP+   IY+
Sbjct: 509 EAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYE 545



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 126/392 (32%), Positives = 214/392 (54%), Gaps = 40/392 (10%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS-----LQNPQVYL 85
           L+ SK + Q+   HA +I+ G  Q    ++++ + S S+ + I+  S       NP VYL
Sbjct: 56  LQRSKHINQVLPIHAQLIRNGHSQ-DPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYL 114

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           Y  +I   +S+ N  +AI LY  ML   +LP+ Y +  +LKAC    +LR G++VH+ ++
Sbjct: 115 YTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRAL 174

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ---------------------- 182
           K  L SN  V   +M LY  CG +    ++F   + P+                      
Sbjct: 175 KLGLSSNRLVRLRIMELYGKCGELGDARRVFE--EMPEDVVASTVMISSYSDQGLVEEAG 232

Query: 183 ------AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
                  ++D V WT +I  +V+ +    A+ +F  M   N+RP+   +V VLSACS+LG
Sbjct: 233 AVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG 292

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
            L +G  +H Y+    F +  ++F+ NALI+MY +CG+I  A+ VFDEM  ++V+++N+M
Sbjct: 293 ALEIGRWVHSYM--RKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 350

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNH 355
           I+GL+  G+ ++A+++FR M G  L+P + T V VLN+C++ G ++ G K  H+      
Sbjct: 351 ISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYG 410

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           +         +VD+  + GR+++A+ + R+MK
Sbjct: 411 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMK 442


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 307/559 (54%), Gaps = 8/559 (1%)

Query: 44  HAFIIKTGSPQH---QTQIL--YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANP 98
           HA I+  G   H    T +L  Y K+  +    ++ N   +   V     I    SN   
Sbjct: 194 HAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLY 253

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           L+A  L+  M+ +G+ P+  T   V KA    + +   ++V  Y+++  + SN  V   L
Sbjct: 254 LDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTAL 313

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + + + CG ++    +F+   H    R    W  +I  Y++  +  +A+  F  MCQ ++
Sbjct: 314 IDMNSKCGSLQEARSIFN--SHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDI 371

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
             D      V +A + L  LSLG K+H     +   ++  V I NA+ + Y KCG++   
Sbjct: 372 YLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNY-VSISNAVANAYAKCGSLEDV 430

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           RKVF+ M  ++++SW S++   +   ++ +A++IF  M+  G+ P+ FT   VL SCAN+
Sbjct: 431 RKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANL 490

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             LE G+ VH  + K  ++ D  I +ALVDMYAKCG +  A  VF  +   D  S+TA+I
Sbjct: 491 CLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAII 550

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G A HG    AL +F  M Q+G+EP+ VTF+ VL ACSH GLVEEG ++F  M + Y L
Sbjct: 551 AGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGL 610

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P+ EHY C+VDL  R G + +A++ I  MP+ P+  VW  LLGAC++H  VEL E+  +
Sbjct: 611 VPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQ 670

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            ++ F+ E    Y+L++N Y     +K+ L LR  MKE+ VKK PGCS + V G  ++F 
Sbjct: 671 KILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTLHKFY 730

Query: 579 KGDKSHPKTLEIYKLLDEI 597
            GD+ HP+  +IY  L+E+
Sbjct: 731 AGDQQHPEKDKIYAKLEEL 749



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 136/536 (25%), Positives = 247/536 (46%), Gaps = 33/536 (6%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKII-SLSRGNEIENL-----SLQNPQVYLYNFIIQC 92
           Q K  H F++K+    H + +L + +  + S+ ++I+        +     + +  +I  
Sbjct: 86  QAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAG 145

Query: 93  LS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
           L+ N   L+    + EM  +G+ P+ +    +L+ C    S+ +G  VHA  +     S+
Sbjct: 146 LAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSH 205

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
            +V   L+ +YA    I+  +K+F    +   + ++VSW  +I  +   D   +A   F 
Sbjct: 206 TFVSTALLNMYAKLQEIEDSYKVF----NTMTEVNVVSWNAMITGFTSNDLYLDAFDLFL 261

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            M    + PD    + V  A   L D++   ++  Y  +    +  +  +  ALIDM  K
Sbjct: 262 RMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALE--LGVDSNTLVGTALIDMNSK 319

Query: 272 CGNIPSARKVFDE--MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
           CG++  AR +F+   +  +    WN+MI+G    G  ++AL++F +M    +  D +T  
Sbjct: 320 CGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYC 379

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGF-IGNALVDMYAKCGRIDQAFGVFRSMKC 388
            V N+ A +  L LGK VH    K+ +  +   I NA+ + YAKCG ++    VF  M+ 
Sbjct: 380 SVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMED 439

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG--- 445
           RD+ S+T+++   +   +  KA++IFS M   GI P++ TF  VL +C++  L+E G   
Sbjct: 440 RDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQV 499

Query: 446 ----CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
               CK  LDM +             +VD++ + G + +A  +   +    D   W A++
Sbjct: 500 HGIICKVGLDMDKCIE--------SALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAII 550

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW-KEALKLRKKMKE 556
                H  V+ A  +   +V+   E +    L      S     +E L+  K MK+
Sbjct: 551 AGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKK 606



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 105/211 (49%)

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           LV +L  C     L     +H ++  + F+    + + N +   Y KC +I +A ++FD+
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           M  +N  SW  +IAGL   G F +  + F  MQ  G+ PD F    +L  C  +  +ELG
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
             VH  +      +  F+  AL++MYAK   I+ ++ VF +M   +V S+ AMI G   +
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
                A D+F  M   G+ PD  TF+GV  A
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKA 281


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 307/559 (54%), Gaps = 8/559 (1%)

Query: 44  HAFIIKTGSPQH---QTQIL--YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANP 98
           HA I+  G   H    T +L  Y K+  +    ++ N   +   V     I    SN   
Sbjct: 194 HAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLY 253

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           L+A  L+  M+ +G+ P+  T   V KA    + +   ++V  Y+++  + SN  V   L
Sbjct: 254 LDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTAL 313

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + + + CG ++    +F+   H    R    W  +I  Y++  +  +A+  F  MCQ ++
Sbjct: 314 IDMNSKCGSLQEARSIFN--SHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDI 371

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
             D      V +A + L  LSLG K+H     +   ++  V I NA+ + Y KCG++   
Sbjct: 372 YLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNY-VSISNAVANAYAKCGSLEDV 430

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           RKVF+ M  ++++SW S++   +   ++ +A++IF  M+  G+ P+ FT   VL SCAN+
Sbjct: 431 RKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANL 490

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             LE G+ VH  + K  ++ D  I +ALVDMYAKCG +  A  VF  +   D  S+TA+I
Sbjct: 491 CLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAII 550

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G A HG    AL +F  M Q+G+EP+ VTF+ VL ACSH GLVEEG ++F  M + Y L
Sbjct: 551 AGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGL 610

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P+ EHY C+VDL  R G + +A++ I  MP+ P+  VW  LLGAC++H  VEL E+  +
Sbjct: 611 VPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQ 670

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            ++ F+ E    Y+L++N Y     +K+ L LR  MKE+ VKK PGCS + V G  ++F 
Sbjct: 671 KILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKFY 730

Query: 579 KGDKSHPKTLEIYKLLDEI 597
            GD+ HP+  +IY  L+E+
Sbjct: 731 AGDQQHPEKDKIYAKLEEL 749



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 136/536 (25%), Positives = 247/536 (46%), Gaps = 33/536 (6%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKII-SLSRGNEIENL-----SLQNPQVYLYNFIIQC 92
           Q K  H F++K+    H + +L + +  + S+ ++I+        +     + +  +I  
Sbjct: 86  QAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAG 145

Query: 93  LS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
           L+ N   L+    + EM  +G+ P+ +    +L+ C    S+ +G  VHA  +     S+
Sbjct: 146 LAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSH 205

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
            +V   L+ +YA    I+  +K+F    +   + ++VSW  +I  +   D   +A   F 
Sbjct: 206 TFVSTALLNMYAKLQEIEDSYKVF----NTMTEVNVVSWNAMITGFTSNDLYLDAFDLFL 261

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            M    + PD    + V  A   L D++   ++  Y  +    +  +  +  ALIDM  K
Sbjct: 262 RMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALE--LGVDSNTLVGTALIDMNSK 319

Query: 272 CGNIPSARKVFDE--MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
           CG++  AR +F+   +  +    WN+MI+G    G  ++AL++F +M    +  D +T  
Sbjct: 320 CGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYC 379

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGF-IGNALVDMYAKCGRIDQAFGVFRSMKC 388
            V N+ A +  L LGK VH    K+ +  +   I NA+ + YAKCG ++    VF  M+ 
Sbjct: 380 SVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMED 439

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG--- 445
           RD+ S+T+++   +   +  KA++IFS M   GI P++ TF  VL +C++  L+E G   
Sbjct: 440 RDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQV 499

Query: 446 ----CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
               CK  LDM +             +VD++ + G + +A  +   +    D   W A++
Sbjct: 500 HGIICKVGLDMDKCIE--------SALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAII 550

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW-KEALKLRKKMKE 556
                H  V+ A  +   +V+   E +    L      S     +E L+  K MK+
Sbjct: 551 AGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKK 606



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 105/211 (49%)

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           LV +L  C     L     +H ++  + F+    + + N +   Y KC +I +A ++FD+
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           M  +N  SW  +IAGL   G F +  + F  MQ  G+ PD F    +L  C  +  +ELG
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
             VH  +      +  F+  AL++MYAK   I+ ++ VF +M   +V S+ AMI G   +
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
                A D+F  M   G+ PD  TF+GV  A
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKA 281


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 193/573 (33%), Positives = 320/573 (55%), Gaps = 12/573 (2%)

Query: 41   KQFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
            KQ H   +K+G     S  +    +Y K+       E+ N       +   + I  C  +
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983

Query: 96   ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ-SQSLRVGQQVHAYSMKTALLSNVYV 154
            +   E++ L+ ++L +GL P+ +TL  VL+AC      L + +Q+H +++KT  +++ +V
Sbjct: 984  SLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFV 1043

Query: 155  FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
              TL+ +Y+  G ++    LF  +       DL  W  ++  Y+  +   +A+  F  + 
Sbjct: 1044 ATTLIDVYSKSGKMEEAEFLFQNKD----DLDLACWNAMMFGYIIGNDGKKALELFSLIH 1099

Query: 215  QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
            ++  + D + L     AC  L  L  G +IH +     F+   D+ +++ ++DMY+KCG+
Sbjct: 1100 KSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFD--SDLHVNSGILDMYIKCGD 1157

Query: 275  IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
            + +A  VF+ +   + V+W SMI+G    G   +AL I+ RM+   + PD++T   ++ +
Sbjct: 1158 MVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKA 1217

Query: 335  CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
             + +  LE G+ +H  + K    +D F+G +LVDMYAKCG I+ A+ +F+ M  R++  +
Sbjct: 1218 SSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALW 1277

Query: 395  TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
             AM+VGLA HG A +A+++F  M   GIEPD V+F+G+LSACSHAGL  E  ++   M  
Sbjct: 1278 NAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPN 1337

Query: 455  VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
             Y ++P+ EHY C+VD  GRAGL++EA  +I++MP    A +  ALLGAC+I   VE  +
Sbjct: 1338 DYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGK 1397

Query: 515  IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
             V   L   EP    AY+L++NIY++ NRW +    RK MK + VKK PG S ++V    
Sbjct: 1398 RVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNML 1457

Query: 575  YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            + F   D+SHP+   IY  ++E+M   +  GY+
Sbjct: 1458 HLFVVDDRSHPQADIIYDKVEEMMKTIREDGYV 1490



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/445 (29%), Positives = 216/445 (48%), Gaps = 18/445 (4%)

Query: 75   NLSLQNPQVYLYNF-IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133
            +LS  NP V+ +N  + +CL   +   AI  +  M    +  +  TL  VL A   +  L
Sbjct: 861  SLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDL 920

Query: 134  RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
             +G+QVH  ++K+ L S+V V N+L+ +Y+  G      ++F+  +H     DL+SW ++
Sbjct: 921  ELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKH----LDLISWNSM 976

Query: 194  IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD---LSLGIKIHRYITD 250
            I +  +     E++  F D+    L+PD   L  VL ACS L D   +S  I +H   T 
Sbjct: 977  ISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTG 1036

Query: 251  NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
            N      D F+   LID+Y K G +  A  +F      ++  WN+M+ G       K+AL
Sbjct: 1037 N----IADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKAL 1092

Query: 311  DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
            ++F  +   G K D  TL     +C  +  L+ GK +H +  K   ++D  + + ++DMY
Sbjct: 1093 ELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMY 1152

Query: 371  AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
             KCG +  A  VF  +   D  ++T+MI G   +G   +AL I+  M Q  + PDE TF 
Sbjct: 1153 IKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFA 1212

Query: 431  GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY--GCMVDLFGRAGLIREALDLIKSM 488
             ++ A S    +E+G +     + V  L   ++ +    +VD++ + G I +A  L K M
Sbjct: 1213 TLIKASSCVTALEQGRQLH---ANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM 1269

Query: 489  PLVPDAFVWGALLGACKIHAKVELA 513
              V +  +W A+L     H   E A
Sbjct: 1270 N-VRNIALWNAMLVGLAQHGNAEEA 1293



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 192/407 (47%), Gaps = 47/407 (11%)

Query: 44   HAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS---- 94
            HA I+ +GS       +    +Y K  SLS   ++ + + +   V  +N I+   +    
Sbjct: 644  HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLV-TWNAILGAYAASVD 702

Query: 95   --NANPLEAIALYREMLIKGLLPNT--YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
              + N  E + L+R  L++  L +T   TL  VLK C  S  L   + VH Y++K  L  
Sbjct: 703  SNDGNAQEGLHLFR--LLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEW 760

Query: 151  NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
            +V+V   L+ +Y+ CG ++    LF + +    +RD+V W  +++ YV++    EA   F
Sbjct: 761  DVFVSGALVNIYSKCGRMRDARLLFDWMR----ERDVVLWNMMLKGYVQLGLEKEAFQLF 816

Query: 211  FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             +  ++ LRPD   + ++L+  S++              D    L+  V  + A + +  
Sbjct: 817  SEFHRSGLRPDEFSVQLILNGVSEVN------------WDEGKWLADQVQAYAAKLSLS- 863

Query: 271  KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
                        D+ P  +V  WN  ++     G    A++ F  M GL +  D  TL+ 
Sbjct: 864  ------------DDNP--DVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLV 909

Query: 331  VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
            VL + A    LELGK VH    K+ +++D  + N+LV+MY+K G    A  VF  MK  D
Sbjct: 910  VLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLD 969

Query: 391  VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            + S+ +MI   A      +++++F ++   G++PD  T   VL ACS
Sbjct: 970  LISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACS 1016



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 173/394 (43%), Gaps = 52/394 (13%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+    + +L +G+  HA  + +    + ++ N L+ +Y+ CG + +  ++F       
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFD----TT 682

Query: 183 AQRDLVSWTTLIQAYVKM----DYPTEAILSFFDMCQANL-RPDGMILVIVLSACSKLGD 237
            +RDLV+W  ++ AY       D   +  L  F + +A+L     M L  VL  C   G 
Sbjct: 683 PERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGC 742

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L     +H Y       L  DVF+  AL+++Y KCG +  AR +FD M  ++VV WN M+
Sbjct: 743 LWAAEGVHGYAI--KIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMML 800

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW----VHTYLDK 353
            G    G  KEA  +F      GL+PD+F++  +LN  + + W E GKW    V  Y  K
Sbjct: 801 KGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDE-GKWLADQVQAYAAK 859

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
             ++ D                              DV+ +   +      G  W A++ 
Sbjct: 860 LSLSDDN----------------------------PDVFCWNKKLSECLWAGDNWGAIEC 891

Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473
           F  M+ + I+ D VT + VL+A +    +E G K    ++    L         +V+++ 
Sbjct: 892 FVNMNGLNIDYDAVTLLVVLAAVAGTDDLELG-KQVHGIAVKSGLDSDVSVANSLVNMYS 950

Query: 474 RAG---LIREALDLIKSMPLVPDAFVWGALLGAC 504
           + G     RE  + +K + L+     W +++ +C
Sbjct: 951 KMGCAYFAREVFNDMKHLDLIS----WNSMISSC 980


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 307/560 (54%), Gaps = 22/560 (3%)

Query: 49  KTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQ-CLSNANPLEAIALYRE 107
           K+G P+    + Y+               +  P +  +N +I  C+ +     A+ L  +
Sbjct: 235 KSGCPEAAIAVFYE---------------IPKPDIVSWNAVIAGCVLHEKNDLALKLLGK 279

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           M    + P+ +TL   LKAC     +++G+Q+H+  MK  +  + +V   L+ +Y+ CGL
Sbjct: 280 MGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGL 339

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           ++    +F         +D++ W ++I  Y    Y  EA+  F +M +  L  +   L  
Sbjct: 340 LQDARMVFDL----MPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLST 395

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +L + +         ++H     + +    D ++ N+L+D Y KC  +  A KVF+  P 
Sbjct: 396 ILKSTAGSQANGFCEQVHTISIKSGYQY--DGYVANSLLDSYGKCCLLEDAAKVFEVCPA 453

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           +++V++ SMI   +  G  +EAL ++ RMQ   +KPD F    + N+CAN+   E GK +
Sbjct: 454 EDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQI 513

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H ++ K  + +D F GN+LV+MYAKCG ID A  +F  +  R + S++AMI GLA HG  
Sbjct: 514 HVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHG 573

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            KAL +F +M + GI P+ +T V VLSAC+HAGLV E  + F  M +++ + P  EHY C
Sbjct: 574 RKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYAC 633

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           MVD+ GR G + EA+ L+K MP    A VWGALLGA +IH  +EL     E L+  EPE 
Sbjct: 634 MVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEK 693

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
            G +IL+ NIY+S   W    K+R+ MK   VKK PG S +E+  + Y F  GD+SHP++
Sbjct: 694 SGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRS 753

Query: 588 LEIYKLLDEIMHQSKNHGYI 607
            EIY  LD++  +  + GY+
Sbjct: 754 KEIYVKLDDLRERLTSAGYV 773



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 156/578 (26%), Positives = 250/578 (43%), Gaps = 51/578 (8%)

Query: 16  INTFQQLSLLHQSPRLESSKSVGQLKQFHAFI---IKTGSPQHQTQILYDKIISLSRGNE 72
           +N + +      + +L    S   L  + A I   ++ G  +      Y+  +  ++GNE
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 73  IENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQS 132
               S+        N     L     +  +AL  EM+  G+ PN ++L  VL AC   + 
Sbjct: 149 FTFSSVLKGCSLTRN-----LELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLED 203

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
              G +VH Y +K    S+ +  N L+ +YA  G  +A   +F+    P    D+VSW  
Sbjct: 204 ENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKP----DIVSWNA 259

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           +I   V  +    A+     M    + P    L   L AC+ +G + LG ++H  +    
Sbjct: 260 VIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMK-- 317

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
            ++ PD F+   LIDMY KCG +  AR VFD MP K+V+ WNS+I+G ++ G   EA+ +
Sbjct: 318 MDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSL 377

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F  M   GL+ +  TL  +L S A        + VHT   K+    DG++ N+L+D Y K
Sbjct: 378 FTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGK 437

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           C  ++ A  VF      D+ +YT+MI   + +G   +AL ++  M    I+PD   F  +
Sbjct: 438 CCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSL 497

Query: 433 LSACSHAGLVEEG----------------------------CKHFLDMSRVYNLQP--QT 462
            +AC++    E+G                            C    D S ++N       
Sbjct: 498 FNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGI 557

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEI---V 516
             +  M+    + G  R+AL L   M    ++P+     ++L AC     V  A     +
Sbjct: 558 VSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGL 617

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
           ME L    P  +  Y  M +I     R  EA+ L K+M
Sbjct: 618 MEKLFGITPTQE-HYACMVDILGRVGRLDEAMVLVKEM 654



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 139/305 (45%), Gaps = 47/305 (15%)

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           D+S G+ IH  I              N L+++Y KC     ARK+  +    ++VSW+++
Sbjct: 65  DVSSGMAIHARIIRLGLLGL-----RNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSAL 119

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLK---------------------------------- 322
           I+G    G+ +EAL  +  M  LG K                                  
Sbjct: 120 ISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTEM 179

Query: 323 ------PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
                 P++F+L  VLN+CA +     G  VH YL K   ++D F  NAL+DMYAK G  
Sbjct: 180 ISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCP 239

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           + A  VF  +   D+ S+ A+I G  +H K   AL +  +M    + P   T    L AC
Sbjct: 240 EAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKAC 299

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           +  GLV+ G +    + ++ +++P +     ++D++ + GL+++A  +   MP   D  V
Sbjct: 300 AAIGLVKLGRQLHSALMKM-DMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMP-XKDVIV 357

Query: 497 WGALL 501
           W +++
Sbjct: 358 WNSII 362


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 176/427 (41%), Positives = 264/427 (61%), Gaps = 5/427 (1%)

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
           HP      VSWT LI AY+   +  EAI        + +RPD    V VL+AC+++ DL 
Sbjct: 3   HPST----VSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLE 58

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G  +          ++  VF+  A +D+Y+KCG +  AR VFDEM  ++ V+W +M+ G
Sbjct: 59  TGEAVWAAARQEE-GVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGG 117

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G  +EALD+F  MQ  G KPD +T+V  L++C  +G L+LG+     +  + +  +
Sbjct: 118 YASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGN 177

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             +G AL+DMYAKCG   +A+ VF+ M  RD+  + AMI+GL + G    A  +  +M +
Sbjct: 178 PVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKK 237

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G++ ++ TF+G+L +C+H GLV +G ++F +M+ VY + P+ EHYGCMVDLF RAGL+ 
Sbjct: 238 SGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLE 297

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA  LI  MP++ +A VWGALLG CKIH   +LAE  ++ L+R EP   G Y++++NIYS
Sbjct: 298 EAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYS 357

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
           +  RW++A KLR +MK + ++K P  S VE+ G+ ++F  GD SHP + +IY  LDE+  
Sbjct: 358 NSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGM 417

Query: 600 QSKNHGY 606
           + K  GY
Sbjct: 418 EMKAMGY 424



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 184/384 (47%), Gaps = 21/384 (5%)

Query: 78  LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + +P    +  +I    +A + LEAI + R     G+ P+++T   VL AC +   L  G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 137 QQVHAYS-MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           + V A +  +  +  +V+V    + LY  CG ++    +F         RD V+W  ++ 
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFD----EMKNRDAVAWGAMVG 116

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            Y    +P EA+  FF M     +PD   +V  LSAC++LG L LG +    +  +    
Sbjct: 117 GYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLG 176

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
           +P   +  ALIDMY KCG+   A  VF +M  ++++ WN+MI GL   G  K A  +  +
Sbjct: 177 NP--VLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQ 234

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGK-----WVHTYLDKNHINTDGFIGNALVDMY 370
           M+  G+K +D T + +L SC + G +  G+       H Y     I   G     +VD++
Sbjct: 235 MKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYG----CMVDLF 290

Query: 371 AKCGRIDQAFGVFRSMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVT 428
           ++ G +++A  +   M    +   + A++ G  IH  A  A     ++  + +EP +   
Sbjct: 291 SRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQL--IRLEPWNSGN 348

Query: 429 FVGVLSACSHAGLVEEGCKHFLDM 452
           +V + +  S++G  E+  K  L+M
Sbjct: 349 YVMLSNIYSNSGRWEDAAKLRLEM 372



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           MP  + VSW ++IA     G   EA+ + RR    G++PD FT V VL +CA +  LE G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 345 K--WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
           +  W     ++  +    F+  A +D+Y KCG +++A  VF  MK RD  ++ AM+ G A
Sbjct: 61  EAVWAAARQEEG-VAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYA 119

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
            +G   +ALD+F  M   G +PD  T VG LSAC+  G ++ G +  + M     +    
Sbjct: 120 SNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLG-RQAVGMVHWDEVLGNP 178

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
                ++D++ + G   EA  + + M L  D  VW A++
Sbjct: 179 VLGTALIDMYAKCGSTSEAWMVFQQM-LERDIIVWNAMI 216


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 197/542 (36%), Positives = 299/542 (55%), Gaps = 65/542 (11%)

Query: 121 PYVLKACWQS-QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG----LIKAVHKLF 175
           P +L   + S ++ R  +Q+HA  +KT  + +      +++  A         +AV    
Sbjct: 19  PLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAV---- 74

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMD---YPTEAILSFFDM-CQANLRPDGMILVIVLSA 231
            FRQ P+   +   W T+++   + +     +EA++ F  M C   ++P+      VL A
Sbjct: 75  -FRQMPEP--NCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKA 131

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC------------------- 272
           C++   L  G +IH  I    F    D F+ + L+ MY+ C                   
Sbjct: 132 CARASRLREGKQIHGLIVK--FGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDG 189

Query: 273 ----------------------------GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
                                       G+I SA+ +FDEMP ++VVSWN MI+G    G
Sbjct: 190 SCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNG 249

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
            F EA+++F+ MQ   + P+  TLV VL + A IG LELGKW+H Y  KN I  D  +G+
Sbjct: 250 HFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGS 309

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
           ALVDMY+KCG ID+A  VF ++  R+  +++A+I   A+HG+A  A+  F  M + G+ P
Sbjct: 310 ALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTP 369

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           ++V ++G+LSACSHAGLVEEG   F  M +V  LQP+ EHYGCMVDL GRAG + EA +L
Sbjct: 370 NDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEEL 429

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
           I++MP+ PD  +W ALLGACK+H  +++ E V E L+   P   G+Y+ ++N+Y+S   W
Sbjct: 430 IRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNW 489

Query: 545 KEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
           +   ++R KMK   ++K PGCS +E++G  +EF   D SH K  EI  +L E+  + +++
Sbjct: 490 EAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSN 549

Query: 605 GY 606
           GY
Sbjct: 550 GY 551



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/489 (26%), Positives = 217/489 (44%), Gaps = 110/489 (22%)

Query: 13  YNDINTFQ---QLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-- 67
           YN   TF    Q  L+   P   S K+   LKQ HA  IKTG  Q Q  +   ++I    
Sbjct: 6   YNPNRTFNFSPQPPLILSKP-FTSCKTPRDLKQLHAIFIKTG--QIQDPLTAAEVIKFCA 62

Query: 68  --SRGNEIENL---SLQNPQVYLYNFIIQCLSNANP----LEAIALYREMLIKGLL-PNT 117
             SR  +        +  P  + +N I++ L+  N      EA+ L+  ML  G + PN 
Sbjct: 63  FSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNR 122

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH- 176
           +T P VLKAC ++  LR G+Q+H   +K     + +V + L+R+Y +C +++  + LF  
Sbjct: 123 FTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCK 182

Query: 177 --------------------------------------------FRQHPQAQRDLVSWTT 192
                                                       F + P  QR +VSW  
Sbjct: 183 NVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMP--QRSVVSWNV 240

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           +I  Y +  +  EAI  F +M  +N+ P+ + LV VL A +++G L LG  IH Y   N 
Sbjct: 241 MISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNK 300

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
             +  D  + +AL+DMY KCG+I  A +VF+ +P +N ++W+++I      G+ ++A+  
Sbjct: 301 IEI--DDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIH 358

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-----NHINTDGFIGNALV 367
           F  M   G+ P+D   + +L++C++ G +E G+   +++ K       I   G     +V
Sbjct: 359 FHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYG----CMV 414

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           D+  + G +++A  + R+M                                   IEPD+V
Sbjct: 415 DLLGRAGHLEEAEELIRNMP----------------------------------IEPDDV 440

Query: 428 TFVGVLSAC 436
            +  +L AC
Sbjct: 441 IWKALLGAC 449



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 154/346 (44%), Gaps = 22/346 (6%)

Query: 59  ILYDKIISLSRGNEIENLSLQNPQ--VYLYNFIIQCLS-NANPLEAIALYREMLIKGLLP 115
           I+ D  + L      +NL  + PQ  V  +N +I   + N + +EAI L++EM    + P
Sbjct: 209 IMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDP 268

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           N  TL  VL A  +  +L +G+ +H Y+ K  +  +  + + L+ +Y+ CG I    ++F
Sbjct: 269 NYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVF 328

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
                   +R+ ++W+ +I A+       +AI+ F  M +A + P+ +  + +LSACS  
Sbjct: 329 E----TLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHA 384

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWN 294
           G +  G     ++      L P +  +  ++D+  + G++  A ++   MP++ + V W 
Sbjct: 385 GLVEEGRSFFSHMV-KVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWK 443

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           +++         K    +   +  L    D  + V + N  A++G  E    V   +   
Sbjct: 444 ALLGACKMHKNLKMGERVAETLMELA-PHDSGSYVALSNLYASLGNWEAVARVRLKMKGM 502

Query: 355 HINTD---------GFIGNALV--DMYAKCGRIDQAFGVFRSMKCR 389
            I  D         G I   LV  D ++K   I    G   SMK R
Sbjct: 503 DIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEM-SMKLR 547


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 191/514 (37%), Positives = 295/514 (57%), Gaps = 8/514 (1%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
             N   LE + L+  M    + P+  T+  V+ AC      R+G Q+H+Y ++TA   N+
Sbjct: 212 FENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNI 271

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V+N+L+++Y   G  K    +F   +     RD+VSWTT+I   V    P +A+ ++  
Sbjct: 272 SVYNSLIQMYLSVGHWKEAESVFSGME----CRDVVSWTTIISGCVDNLLPDKALETYKT 327

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M      PD + +  VLSAC+ LG L +G+K+H         L   V + N+LIDMY KC
Sbjct: 328 MEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILY--VVVANSLIDMYSKC 385

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
             I  A ++F ++P K+V+SW S+I GL    +  EAL  FR+M  L  KP+  TL+  L
Sbjct: 386 KRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMI-LKSKPNSVTLISAL 444

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           ++CA +G L  GK +H +  K  +  DGF+ NA++D+Y +CGR+  A   F ++  +DV 
Sbjct: 445 SACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQF-NLNEKDVG 503

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           ++  ++ G A  GK    +++F  M +  I PD+VTF+ +L ACS +G+V EG ++F  M
Sbjct: 504 AWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRM 563

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              Y++ P  +HY C+VDL GRAG + EA + I+ MP+ PD  +WGALL AC+IH  V L
Sbjct: 564 KVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLL 623

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            E+  +++ + + E  G YIL+ N+Y+   +W E  K+R+ MKE  +   PGCS VEV G
Sbjct: 624 GELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKG 683

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           + + F  GD  HP+  EI  +L+    + K  G+
Sbjct: 684 KVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSGF 717



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 238/461 (51%), Gaps = 19/461 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ LY  +L  G+ P+ YT P VL++C  +  L  G++VHA+ ++     +V V N L+
Sbjct: 118 EALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALI 177

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y  CG + +   LF         RD +SW  +I  Y + D   E +  FF M + ++ 
Sbjct: 178 TMYVKCGDVVSARMLF----DKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSID 233

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD M +  V+SAC  LGD  LG ++H Y+    ++   ++ ++N+LI MYL  G+   A 
Sbjct: 234 PDLMTMTSVISACELLGDERLGTQLHSYVVRTAYD--GNISVYNSLIQMYLSVGHWKEAE 291

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            VF  M  ++VVSW ++I+G        +AL+ ++ M+  G  PD+ T+  VL++CA++G
Sbjct: 292 SVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLG 351

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L++G  +H   ++        + N+L+DMY+KC RI++A  +F  +  +DV S+T++I 
Sbjct: 352 QLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVIN 411

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK---HFLDMSRVY 456
           GL I+ + ++AL  F +M  +  +P+ VT +  LSAC+  G +  G +   H L     +
Sbjct: 412 GLRINNRCFEALIFFRKMI-LKSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGF 470

Query: 457 N-LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           +   P       ++DL+ R G +R AL+         D   W  LL       K  +   
Sbjct: 471 DGFLPNA-----ILDLYVRCGRMRTALNQFNLNE--KDVGAWNILLTGYAQKGKGAMVME 523

Query: 516 VMENLVRFEPEGDG-AYILMTNIYSSKNRWKEALKLRKKMK 555
           + + +V  E   D   +I +    S      E L+  ++MK
Sbjct: 524 LFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMK 564



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 197/379 (51%), Gaps = 20/379 (5%)

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
           L +V + N L+ ++   G +     +F        +RDL SW  L+  Y K  +  EA+ 
Sbjct: 66  LLSVRLGNALLSMFVRFGDVGNAWNVFG----RMGERDLFSWNVLVGGYTKAGFFDEALC 121

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            +  +  A +RPD      VL +C+   DL  G ++H ++    F+   DV + NALI M
Sbjct: 122 LYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVV--RFDFDMDVDVVNALITM 179

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y+KCG++ SAR +FD+MP ++ +SWN+MI+G     +  E L++F RM+ L + PD  T+
Sbjct: 180 YVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTM 239

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             V+++C  +G   LG  +H+Y+ +   + +  + N+L+ MY   G   +A  VF  M+C
Sbjct: 240 TSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMEC 299

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           RDV S+T +I G   +    KAL+ +  M   G  PDEVT   VLSAC+  G ++ G K 
Sbjct: 300 RDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMK- 358

Query: 449 FLDMSRVYNLQPQTEHY------GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
                 ++ L  +T H         ++D++ +   I +AL++   +P   D   W +++ 
Sbjct: 359 ------LHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIP-DKDVISWTSVIN 411

Query: 503 ACKIHAKVELAEIVMENLV 521
             +I+ +   A I    ++
Sbjct: 412 GLRINNRCFEALIFFRKMI 430



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 193/372 (51%), Gaps = 19/372 (5%)

Query: 42  QFHAFIIKTGSPQHQTQILYDKII----SLSRGNEIENL--SLQNPQVYLYNFIIQ-CLS 94
           Q H+++++T    + +  +Y+ +I    S+    E E++   ++   V  +  II  C+ 
Sbjct: 257 QLHSYVVRTAYDGNIS--VYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVD 314

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N  P +A+  Y+ M I G +P+  T+  VL AC     L +G ++H  + +T  +  V V
Sbjct: 315 NLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVV 374

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N+L+ +Y+ C  I+   ++FH  Q P   +D++SWT++I      +   EA++ F  M 
Sbjct: 375 ANSLIDMYSKCKRIEKALEIFH--QIP--DKDVISWTSVINGLRINNRCFEALIFFRKMI 430

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
             + +P+ + L+  LSAC+++G L  G +IH +       +  D F+ NA++D+Y++CG 
Sbjct: 431 LKS-KPNSVTLISALSACARVGALMCGKEIHAHALKA--GMGFDGFLPNAILDLYVRCGR 487

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           + +A   F+ +  K+V +WN ++ G   +G+    +++F+RM    + PDD T + +L +
Sbjct: 488 MRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCA 546

Query: 335 CANIGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVY 392
           C+  G +  G      +  N HI  +      +VD+  + G++++A      M  + D  
Sbjct: 547 CSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPA 606

Query: 393 SYTAMIVGLAIH 404
            + A++    IH
Sbjct: 607 IWGALLNACRIH 618


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 208/594 (35%), Positives = 329/594 (55%), Gaps = 29/594 (4%)

Query: 22  LSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL---YDKIISLSRGNEIENLSL 78
           ++L+ Q   LE+      LK  HA I+K+    H    L   Y  + S+S    + + S 
Sbjct: 8   IALIKQCVTLEA------LKSLHASILKSHLHPHLCTSLIAQYASLGSISHAYALFSTS- 60

Query: 79  QNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
            +  V+L+N II+  SN  +   ++ LY  ML  G+    +T P++LKAC       +G 
Sbjct: 61  HSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGA 120

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           + HA+ +     S+V+V N+LM +Y   G      ++F        +R++VSW++++ AY
Sbjct: 121 RAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFE----RMPERNVVSWSSMVGAY 176

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
                  E +L F+ M    + P+   +V  ++   +  +        R + DN   L  
Sbjct: 177 AHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEAD---DFCRVVIDN--GLDS 231

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           D  + NA + MY +CG I  AR+ F  +  K++V+W SMI           AL++F++M+
Sbjct: 232 DQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMK 291

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD----KNHINTDGFIGNALVDMYAKC 373
            LG+ PD  TL+ ++++ +N+   +L ++VH  +     KNHI  D     A++D+Y KC
Sbjct: 292 LLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALD----TAVIDLYVKC 347

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G ++ A   F  M  R++ S++ MI G  +HG   +AL +F +M +  I+PD + FV VL
Sbjct: 348 GNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQM-KASIKPDHIAFVMVL 406

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SACSH GL+ EG + F  M+R + + P+TEHY CMVDL GRAG + EA   I+ MP+ PD
Sbjct: 407 SACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPD 466

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
           A VWGALLGAC+IH+ +E AE    +L   + E  G YIL++NIY+S  + KEA  +R  
Sbjct: 467 AGVWGALLGACRIHSNLETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRAL 526

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           MK R V+KT G +++E+  + Y F  GD S+P+T  IY  L ++M + +  GY+
Sbjct: 527 MKSRGVRKTVGHTIIEIKNKVYTFVAGDTSNPQTDLIYSELRKLMDRIQEAGYV 580


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 188/480 (39%), Positives = 278/480 (57%), Gaps = 5/480 (1%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-FRQHPQAQRDL 187
           +  SLR  +Q+ A+++KT L S++ V    +   ++     ++    H F Q PQ   D+
Sbjct: 29  KCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQP--DI 86

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
           V + T+ + Y + D P  A   F  +  + L PD      +L AC+    L  G ++H  
Sbjct: 87  VLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCL 146

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
                  LS +V++   LI+MY  C  +  AR+VFD++    VV++N+MI G     +  
Sbjct: 147 AIK--LGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPN 204

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           EAL +FR +Q   LKP D T++ VL+SCA +G L+LGKW+H Y+ KN  N    +  AL+
Sbjct: 205 EALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALI 264

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           DMYAKCG +D A  VF +M  RD  +++AMI+  AIHG   KA+ +F EM + G EPDE+
Sbjct: 265 DMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEI 324

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           TF+G+L ACSH GLVEEG ++F  M   Y + P  +HYGCMVDL GRAG + EA + I  
Sbjct: 325 TFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVG 384

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
           +P+ P   +W  LL AC  H  VEL + V+E +   +    G YI+++N+ +   RW++ 
Sbjct: 385 LPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDV 444

Query: 548 LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             +RK M ER V K PGCS VEV    +EF  GD  H  + ++++ LDE++ + K  GY+
Sbjct: 445 NYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYV 504



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 217/456 (47%), Gaps = 62/456 (13%)

Query: 2   ASPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILY 61
           A P+T       N  NT   LSLL +        S+ +LKQ  AF IKT    H    + 
Sbjct: 5   APPVTPMCPPNSNS-NTTHPLSLLPKC------TSLRELKQLQAFAIKTH--LHSDLSVL 55

Query: 62  DKIISLSRGNEIENLSLQN----------PQVYLYNFIIQCLSNAN-PLEAIALYREMLI 110
            K I+    N     S+Q+          P + L+N + +  +  + PL A  L+ ++L 
Sbjct: 56  TKFINFCSLNPTTT-SMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILF 114

Query: 111 KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170
            GL P+ YT P +LKAC   ++L  G+Q+H  ++K  L  NVYV  TL+ +Y  C  +  
Sbjct: 115 SGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDC 174

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
             ++F     P     +V++  +I  Y +   P EA+  F ++   NL+P  + ++ VLS
Sbjct: 175 ARRVFDKIWEPC----VVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLS 230

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           +C+ LG L LG  +H Y+  N FN    V +  ALIDMY KCG++  A  VF+ M V++ 
Sbjct: 231 SCALLGALDLGKWMHEYVKKNGFNRF--VKVDTALIDMYAKCGSLDDAVCVFENMAVRDT 288

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHT 349
            +W++MI      G   +A+ +F+ M+  G +PD+ T + +L +C++ G +E G ++ + 
Sbjct: 289 QAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYG 348

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
             DK  +         +VD+  + GR+++A+                 IVGL        
Sbjct: 349 MRDKYGVIPGIKHYGCMVDLLGRAGRLEEAY---------------EFIVGLP------- 386

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
                       I P  + +  +LSAC   G VE G
Sbjct: 387 ------------IRPTPILWRTLLSACGSHGNVELG 410


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 200/562 (35%), Positives = 316/562 (56%), Gaps = 57/562 (10%)

Query: 18  TFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQT---QILYDKIISLSRGNEIE 74
           T +  S   +S    S  ++G LKQ HA +I  G   + +   +++Y   I++S      
Sbjct: 7   TDKSPSRQQRSQLWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYA 66

Query: 75  NL---SLQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQS 130
           +     +  P  +++N +I+  + + +PL AI+LY +M    + P+ +T P+VLKAC + 
Sbjct: 67  HQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRL 126

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
             +++G  VH    +    SN +V NTL+  +A CG +     LF       A+RD+V+W
Sbjct: 127 CWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFD----GSAKRDVVAW 182

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
           + L   Y                                   ++ G+L +  ++      
Sbjct: 183 SALTAGY-----------------------------------ARRGELGVARQL------ 201

Query: 251 NHFNLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
             F+  P  D+   N +I  Y K G + SARK+FDE+P ++VV+WN+MIAG    G  ++
Sbjct: 202 --FDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQ 259

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-NHINTDGFIGNALV 367
           AL++F  M+ +G  PD+ T++ +L++C ++G L+ G+ +H  + +    +    +GNAL+
Sbjct: 260 ALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALI 319

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           DMYAKCG I +A  VF+ M+ +DV ++ +++ GLA HG A K++ +F+EM ++ I PDE+
Sbjct: 320 DMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEI 379

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           TFVGVL ACSHAG VEEG ++F  M   YN++P   HYGCMVDL GRAGL+ EA D I +
Sbjct: 380 TFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDT 439

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
           M + P+A VW  LLGAC+IH  VEL       L++   +  G Y+L++NIY+S+  W   
Sbjct: 440 MKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGV 499

Query: 548 LKLRKKMKERKVKKTPGCSLVE 569
            K+RK M +  V+K  GCSL+E
Sbjct: 500 EKVRKLMDDSGVRKEAGCSLIE 521


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 191/513 (37%), Positives = 292/513 (56%), Gaps = 8/513 (1%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
             N   LE + L+  M+   + P+  T+  V+ AC      R+G+Q+H Y ++T    + 
Sbjct: 284 FENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDP 343

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            + N+L+ +Y+  GLI+    +F   +     RDLVSWT +I  Y     P +A+ ++  
Sbjct: 344 SIHNSLIPMYSSVGLIEEAETVFSRTE----CRDLVSWTAMISGYENCLMPQKALETYKM 399

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M    + PD + + IVLSACS L +L +G+ +H         L     + N+LIDMY KC
Sbjct: 400 MEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQK--GLVSYSIVANSLIDMYAKC 457

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
             I  A ++F     KN+VSW S+I GL    +  EAL  FR M    LKP+  TLVCVL
Sbjct: 458 KCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVL 516

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           ++CA IG L  GK +H +  +  ++ DGF+ NA++DMY +CGR++ A+  F S+   +V 
Sbjct: 517 SACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVD-HEVT 575

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+  ++ G A  GK   A ++F  M +  + P+EVTF+ +L ACS +G+V EG ++F  M
Sbjct: 576 SWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSM 635

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              Y++ P  +HY C+VDL GR+G + EA + I+ MP+ PD  VWGALL +C+IH  VEL
Sbjct: 636 KYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVEL 695

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            E+  EN+ + +    G YIL++N+Y+   +W +  ++RK M++  +   PGCS VEV G
Sbjct: 696 GELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKG 755

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
             + F   D  HP+  EI  LL+    + K  G
Sbjct: 756 TVHAFLSSDNFHPQIKEINALLERFYKKMKEAG 788



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 202/369 (54%), Gaps = 8/369 (2%)

Query: 78  LQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           ++   ++ +N ++   + A    EA+ LY  ML  G+ P+ YT P VL+ C    +L  G
Sbjct: 167 MEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRG 226

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +++H + ++    S+V V N L+ +Y  CG +     +F         RD +SW  +I  
Sbjct: 227 REIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVF----DKMPNRDRISWNAMISG 282

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y +     E +  F  M +  + PD M +  V++AC  LGD  LG +IH Y+    F   
Sbjct: 283 YFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRD 342

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           P   IHN+LI MY   G I  A  VF     +++VSW +MI+G  +    ++AL+ ++ M
Sbjct: 343 PS--IHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMM 400

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +  G+ PD+ T+  VL++C+ +  L++G  +H    +  + +   + N+L+DMYAKC  I
Sbjct: 401 EAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCI 460

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           D+A  +F S   +++ S+T++I+GL I+ + ++AL  F EM +  ++P+ VT V VLSAC
Sbjct: 461 DKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR-RLKPNSVTLVCVLSAC 519

Query: 437 SHAGLVEEG 445
           +  G +  G
Sbjct: 520 ARIGALTCG 528



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 200/419 (47%), Gaps = 46/419 (10%)

Query: 123 VLKACWQSQSLRVGQQVHAY----------SMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           +++ C   ++ + G +V++Y           +  ALLS    F  L+  + V G ++   
Sbjct: 112 LIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRME--- 168

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
                      +R+L SW  L+  Y K     EA+  +  M    ++PD      VL  C
Sbjct: 169 -----------KRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTC 217

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
             + +L  G +IH ++    +    DV + NALI MY+KCG++ +AR VFD+MP ++ +S
Sbjct: 218 GGMPNLVRGREIHVHVI--RYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRIS 275

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WN+MI+G    G   E L +F  M    + PD  T+  V+ +C  +G   LG+ +H Y+ 
Sbjct: 276 WNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVL 335

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           +     D  I N+L+ MY+  G I++A  VF   +CRD+ S+TAMI G        KAL+
Sbjct: 336 RTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALE 395

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG------ 466
            +  M   GI PDE+T   VLSACS        C   LDM    NL    +  G      
Sbjct: 396 TYKMMEAEGIMPDEITIAIVLSACS--------CLCNLDMG--MNLHEVAKQKGLVSYSI 445

Query: 467 ---CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
               ++D++ +   I +AL++  S  L  +   W +++   +I+ +   A      ++R
Sbjct: 446 VANSLIDMYAKCKCIDKALEIFHS-TLEKNIVSWTSIILGLRINNRCFEALFFFREMIR 503



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 147/288 (51%), Gaps = 9/288 (3%)

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G +++ Y++ +  +LS  + + NAL+ M+++ GN+  A  VF  M  +N+ SWN ++ G 
Sbjct: 125 GSRVYSYVSISMSHLS--LQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGY 182

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
              G F EALD++ RM  +G+KPD +T  CVL +C  +  L  G+ +H ++ +    +D 
Sbjct: 183 AKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDV 242

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            + NAL+ MY KCG ++ A  VF  M  RD  S+ AMI G   +G   + L +F  M + 
Sbjct: 243 DVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKY 302

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            ++PD +T   V++AC   G    G + H   +   +   P    +  ++ ++   GLI 
Sbjct: 303 PVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSI--HNSLIPMYSSVGLIE 360

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           EA + + S     D   W A++     +    + +  +E     E EG
Sbjct: 361 EA-ETVFSRTECRDLVSWTAMISG---YENCLMPQKALETYKMMEAEG 404



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 152/328 (46%), Gaps = 42/328 (12%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K   + +  EI + +L+   V   + I+    N    EA+  +REM I+ L PN+ T
Sbjct: 453 MYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM-IRRLKPNSVT 511

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           L  VL AC +  +L  G+++HA++++T +  + ++ N ++ +Y  CG ++   K F    
Sbjct: 512 LVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVD 571

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
           H     ++ SW  L+  Y +      A   F  M ++N+ P+ +  + +L ACS+ G ++
Sbjct: 572 H-----EVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVA 626

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G++        +FN                      S +  +  MP  N+  +  ++  
Sbjct: 627 EGLE--------YFN----------------------SMKYKYSIMP--NLKHYACVVDL 654

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           L   G+ +EA +  ++M    +KPD      +LNSC     +ELG+     + ++   + 
Sbjct: 655 LGRSGKLEEAYEFIQKMP---MKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSV 711

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           G+    L ++YA  G+ D+   V + M+
Sbjct: 712 GYY-ILLSNLYADNGKWDKVAEVRKMMR 738


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 193/573 (33%), Positives = 319/573 (55%), Gaps = 15/573 (2%)

Query: 42  QFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H+  +K G  Q          +Y K   L     +  L  ++  V     I  C+ N 
Sbjct: 263 QLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNG 322

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
              EA+ L+ +ML  G  P++ TL  +L A      L+ G++VH Y ++  +  + ++ +
Sbjct: 323 LLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVS 382

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQR--DLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            L+ +Y  C  ++    L+       A R  D+V  +T+I  YV      +A+  F  + 
Sbjct: 383 ALVDIYFKCRDVRTARNLY------DAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLL 436

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  ++P+ + +  VL AC+ +  L LG +IH Y+  N +      ++ +AL+DMY KCG 
Sbjct: 437 EQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYE--GKCYVESALMDMYAKCGR 494

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  +  +F +M +K+ V+WNSMI+  +  G+ +EALD+FR+M   G+K ++ T+   L++
Sbjct: 495 LDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSA 554

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA++  +  GK +H  + K  I  D F  +AL+DMYAKCG ++ A  VF  M  ++  S+
Sbjct: 555 CASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSW 614

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            ++I     HG   +++     M + G +PD VTF+ ++SAC+HAGLVEEG + F  M++
Sbjct: 615 NSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTK 674

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y + P+ EH+ CMVDL+ R+G + +A+  I  MP  PDA +WGALL AC++H  VELA+
Sbjct: 675 EYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELAD 734

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
           I  + L + +P   G Y+LM+NI +   RW    K+R+ MK+ K+ K PG S V+V    
Sbjct: 735 IASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSS 794

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + F   DKSHP++ +IY  L  ++ + +  GY+
Sbjct: 795 HLFVASDKSHPESEDIYTSLKALLQELREEGYV 827



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/490 (28%), Positives = 241/490 (49%), Gaps = 43/490 (8%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+ L+R M + G  PN  TL   L  C     L  G Q+H+ ++K  L   V V NTL+ 
Sbjct: 226 AVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLS 285

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +YA C  +    +LF        + DLV+W  +I   V+     EA+  F DM ++  RP
Sbjct: 286 MYAKCRCLDDAWRLFEL----LPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARP 341

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D + LV +L A + L  L  G ++H YI  N  ++  D F+ +AL+D+Y KC ++ +AR 
Sbjct: 342 DSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHM--DAFLVSALVDIYFKCRDVRTARN 399

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           ++D     +VV  +++I+G    G  ++AL +FR +    +KP+  T+  VL +CA+I  
Sbjct: 400 LYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISA 459

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L LG+ +H Y+ +N      ++ +AL+DMYAKCGR+D +  +F  M  +D  ++ +MI  
Sbjct: 460 LPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISS 519

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA----------GLVEEG----- 445
            + +G+  +ALD+F +M   GI+ + VT    LSAC+            G++ +G     
Sbjct: 520 FSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKAD 579

Query: 446 -------------CKHFLDMSRVYNLQPQTEH--YGCMVDLFGRAGLIREALDLIKSMP- 489
                        C +     RV+   P      +  ++  +G  GL++E++  +  M  
Sbjct: 580 IFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQE 639

Query: 490 --LVPDAFVWGALLGACKIHAKVELAEIVMENLVR---FEPEGDGAYILMTNIYSSKNRW 544
               PD   + AL+ AC     VE    + + + +     P  +  +  M ++YS   R 
Sbjct: 640 EGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRME-HFACMVDLYSRSGRL 698

Query: 545 KEALKLRKKM 554
            +A++    M
Sbjct: 699 DKAIQFIADM 708



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 200/390 (51%), Gaps = 10/390 (2%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P+ +TLPYV+K+C    ++ +G+ VH  +  T L S+VYV + L+++Y+  GL++     
Sbjct: 139 PDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDA 198

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F         RD V W  ++  Y+K      A+  F +M  +   P+   L   LS C+ 
Sbjct: 199 F----DGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAA 254

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
             DL  G+++H         L  +V + N L+ MY KC  +  A ++F+ +P  ++V+WN
Sbjct: 255 EADLLSGVQLHSLAVK--CGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWN 312

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
            MI+G    G   EAL +F  M   G +PD  TLV +L +  ++  L+ GK VH Y+ +N
Sbjct: 313 GMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRN 372

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            ++ D F+ +ALVD+Y KC  +  A  ++ + +  DV   + +I G  ++G + KAL +F
Sbjct: 373 CVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMF 432

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFG 473
             + +  I+P+ VT   VL AC+    +  G + H   +   Y  +   E    ++D++ 
Sbjct: 433 RYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVE--SALMDMYA 490

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           + G +  +  +   M L  D   W +++ +
Sbjct: 491 KCGRLDLSHYIFSKMSL-KDEVTWNSMISS 519



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 163/328 (49%), Gaps = 8/328 (2%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSN---VYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           +L+ C  +  L +G Q+HA ++ +  LSN   + +   L+ +Y +    +    +F    
Sbjct: 38  LLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ--ANLRPDGMILVIVLSACSKLGD 237
              A   L  W  LI+ +    + + A+L +  M    A   PD   L  V+ +C+ LG 
Sbjct: 98  RAAAGSSL-PWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGA 156

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           +SLG  +HR  T     L+ DV++ +ALI MY   G +  AR  FD MP ++ V WN M+
Sbjct: 157 VSLGRLVHR--TARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMM 214

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
            G    G    A+ +FR M+  G +P+  TL C L+ CA    L  G  +H+   K  + 
Sbjct: 215 DGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLE 274

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            +  + N L+ MYAKC  +D A+ +F  +   D+ ++  MI G   +G   +AL +F +M
Sbjct: 275 QEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDM 334

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEG 445
            + G  PD VT V +L A +    +++G
Sbjct: 335 LRSGARPDSVTLVSLLPALTDLNGLKQG 362


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 182/495 (36%), Positives = 294/495 (59%), Gaps = 40/495 (8%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVC--GLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
           Q++HA+ +KT L  +    + ++   A    G I   + +F     P    +L SW T+I
Sbjct: 41  QKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSP----NLFSWNTII 96

Query: 195 QAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           + + +   P  AI  F DM   ++++P  +    V  A ++LG    G ++H  +     
Sbjct: 97  RGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIK--L 154

Query: 254 NLSPDVFIHNALIDMYL-------------------------------KCGNIPSARKVF 282
            L  D FI N +I MY                                KCG +  +RK+F
Sbjct: 155 GLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLF 214

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
           DEMP++N VSWNSMI+G    G+ +EALD+F +MQ   +KP +FT+V +LN+ A +G L+
Sbjct: 215 DEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALK 274

Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
            G+W+H Y+ KN+   +  +  +++DMY KCG I +AF VF     + + S+  MI+GLA
Sbjct: 275 QGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLA 334

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
           ++G   +A+ +FS +    + PD+VTFVGVL+AC+++GLV++  ++F  MS+ Y ++P  
Sbjct: 335 MNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSI 394

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
           +HY CMVD  GRAGL+ EA +LI++MP+ PDA +W +LL AC+ H  VELA+   +++V 
Sbjct: 395 KHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVD 454

Query: 523 FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDK 582
            +      Y+L++NIY++ ++++EA++ R  MKE++++K PGCSL+EV GE +EF  G +
Sbjct: 455 LDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEIHEFVAGGR 514

Query: 583 SHPKTLEIYKLLDEI 597
            HP+  E+Y LL+E+
Sbjct: 515 LHPQAQEVYSLLNEL 529



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 209/456 (45%), Gaps = 75/456 (16%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIENLSL-----QNPQVYLYNFI 89
           ++  L++ HA ++KTG  +H   +       + S G +I    L      +P ++ +N I
Sbjct: 36  TMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTI 95

Query: 90  IQCLS-NANPLEAIALYREMLI-KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           I+  S ++ P  AI+L+ +MLI   + P+  T P V KA  Q      G Q+H   +K  
Sbjct: 96  IRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLG 155

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ---------------------------H 180
           L  + ++ NT++ +YA CG +  + K F+ R                             
Sbjct: 156 LQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFD 215

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
               R+ VSW ++I  YV+     EA+  F  M +  ++P    +V +L+A ++LG L  
Sbjct: 216 EMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQ 275

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G  IH YI  N+F L  +V +  ++IDMY KCG+I  A +VF+  P+K + SWN+MI GL
Sbjct: 276 GEWIHDYIRKNNFEL--NVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGL 333

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTD 359
              G   EA+ +F R++   L+PDD T V VL +C   G ++  K   + + K + I   
Sbjct: 334 AMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPS 393

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
               + +VD   + G +++A  + R+M                                 
Sbjct: 394 IKHYSCMVDTLGRAGLLEEAEELIRNMP-------------------------------- 421

Query: 420 VGIEPDEVTFVGVLSACSHAGLVE---EGCKHFLDM 452
             + PD + +  +LSAC   G VE      KH +D+
Sbjct: 422 --VNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDL 455


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 177/485 (36%), Positives = 280/485 (57%), Gaps = 7/485 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           ++ AC + +SL   + +HA+   +    +V++ N+L+ LY  CG +    ++F       
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFD----GM 125

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
             RD+ SWT+LI  Y + D P EA+     M +   +P+G     +L A        +G 
Sbjct: 126 PARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           +IH       ++   DV++ +AL+DMY +CG +  A  VFD++  KN VSWN++IAG   
Sbjct: 186 QIHALTV--KYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 243

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
           +G  +  L +F  MQ  G +   FT   V ++ A IG LE GKWVH ++ K+      F+
Sbjct: 244 KGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFV 303

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           GN ++DMYAK G +  A  VF  +  +DV ++ +M+   A +G   +A+  F EM + G+
Sbjct: 304 GNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGV 363

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
             +++TF+ +L+ACSH GLV+EG K + DM + YNL+P+ +HY  +VDL GRAGL+ +AL
Sbjct: 364 HLNQITFLSILTACSHGGLVKEG-KQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDAL 422

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
             I  MP+ P A VWGALLG+C++H   ++ +   +++   +P+  G  +L+ NIY+S  
Sbjct: 423 VFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTG 482

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           +W  A ++RK MK   VKK P CS VE+    + F   D +HP++ EIYK  +EI  Q +
Sbjct: 483 QWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIR 542

Query: 603 NHGYI 607
             GY+
Sbjct: 543 KAGYV 547



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 6/286 (2%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N  P EA+ L   ML     PN +T   +LKA   S S  +G+Q+HA ++K     +VYV
Sbjct: 143 NDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYV 202

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +YA CG +     +F   +     ++ VSW  LI  + +       +L F +M 
Sbjct: 203 GSALLDMYARCGRMDMAIAVFDQLE----SKNGVSWNALIAGFARKGDGETTLLMFAEMQ 258

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +            V SA + +G L  G  +H ++  +   LS   F+ N ++DMY K G+
Sbjct: 259 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLS--AFVGNTILDMYAKSGS 316

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  ARKVFD +  K+VV+WNSM+      G  +EA+  F  M+  G+  +  T + +L +
Sbjct: 317 MIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTA 376

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           C++ G ++ GK     + + ++  +      +VD+  + G ++ A 
Sbjct: 377 CSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDAL 422


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 189/517 (36%), Positives = 294/517 (56%), Gaps = 8/517 (1%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N +   A  ++ EM      PN+ T   VL  C     +  G Q+H   + + L  + 
Sbjct: 224 VKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDS 283

Query: 153 YVFNT--LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
            V NT  L+ +Y  C  ++   K+F  R       D+V  T +I  YV       A+  F
Sbjct: 284 PVANTFALIDIYFKCRDVEMARKIFDQR----TPVDIVVCTAMISGYVLNGMNNNALEIF 339

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             + Q  +R + + L  VL AC+ L  L+LG ++H +I  N    S   ++ +A++DMY 
Sbjct: 340 RWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGS--CYVGSAIMDMYA 397

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG +  A + F  +  K+ V WNSMI   +  G+ +EA+D+FR+M   G K D  ++  
Sbjct: 398 KCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISA 457

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
            L++CAN+  L  GK +H ++ +    +D F  +AL+DMY+KCG +D A  VF +M+ ++
Sbjct: 458 ALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKN 517

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
             S+ ++I     HG+   +L++F  M   GI+PD VTF+ ++SAC HAG V+EG  +F 
Sbjct: 518 EVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFR 577

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M+    +  + EHY CMVDLFGRAG + EA  +I SMP  PDA VWG LLGAC++H  V
Sbjct: 578 CMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNV 637

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           ELAE+   NL   +P+  G Y+L++N++++  +W+  LK+R  MKER V+K PGCS ++V
Sbjct: 638 ELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDV 697

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
               + F   D+SHP++ +IY LL  +  + +  GY+
Sbjct: 698 NNTTHMFVAADRSHPQSSQIYLLLKNLFLELRKEGYV 734



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/510 (26%), Positives = 234/510 (45%), Gaps = 50/510 (9%)

Query: 86  YNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N++I+  +     + A+  Y +ML  G LP+ YT PYV+KAC    S+ +G+ VH    
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQ 174

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
                 +V+V ++L++ Y+  G I     LF         +D V W  ++  YVK     
Sbjct: 175 FMGFELDVFVGSSLIKFYSENGCIHDARYLFD----RMPSKDGVLWNVMLNGYVKNGDWD 230

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A   F +M +    P+ +    VLS C+    ++ G ++H  +  +   +   V    A
Sbjct: 231 NATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFA 290

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LID+Y KC ++  ARK+FD+    ++V   +MI+G    G    AL+IFR +    ++ +
Sbjct: 291 LIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRAN 350

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             TL  VL +CA +  L LGK +H ++ KN      ++G+A++DMYAKCGR+D A   F 
Sbjct: 351 SVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFI 410

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            +  +D   + +MI   + +GK  +A+D+F +M   G + D V+    LSAC++   +  
Sbjct: 411 GISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHY 470

Query: 445 G----------------------------CKHFLDMSRVYNLQPQTEH--YGCMVDLFGR 474
           G                            C +     RV++   +     +  ++  +G 
Sbjct: 471 GKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGN 530

Query: 475 AGLIREALDLIKSM---PLVPDAFVWGALLGAC----KIHAKVELAEIVMENL---VRFE 524
            G ++++L+L   M    + PD   + A++ AC    ++   +     + E L    R E
Sbjct: 531 HGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARME 590

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
                 Y  M +++    R  EA  +   M
Sbjct: 591 -----HYACMVDLFGRAGRLNEAFGMINSM 615



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 179/397 (45%), Gaps = 12/397 (3%)

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           L  +L+ C     L  G+Q HA  +   +  N  +   L+ +Y +CG       +F+  +
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
              ++     W  +I+ +  M     A+L +F M      PD      V+ AC  L  ++
Sbjct: 109 LWCSE----PWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVA 164

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           LG  +H  I    F L  DVF+ ++LI  Y + G I  AR +FD MP K+ V WN M+ G
Sbjct: 165 LGRVVHDKIQFMGFEL--DVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNG 222

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G +  A  +F  M+     P+  T  CVL+ CA+   +  G  +H  +  + +  D
Sbjct: 223 YVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMD 282

Query: 360 GFIGN--ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
             + N  AL+D+Y KC  ++ A  +F      D+   TAMI G  ++G    AL+IF  +
Sbjct: 283 SPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWL 342

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAG 476
            Q  +  + VT   VL AC  AGL        L    + N    + + G  ++D++ + G
Sbjct: 343 LQERMRANSVTLASVLPAC--AGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCG 400

Query: 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
            +  A      +    DA  W +++ +C  + K E A
Sbjct: 401 RLDLAHQTFIGIS-DKDAVCWNSMITSCSQNGKPEEA 436



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 109/224 (48%), Gaps = 6/224 (2%)

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           + I  C  N  P EAI L+R+M + G   +  ++   L AC    +L  G+++HA+ M+ 
Sbjct: 422 SMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRG 481

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
           A  S+++  + L+ +Y+ CG +    ++F   +    +++ VSW ++I AY       ++
Sbjct: 482 AFRSDLFAESALIDMYSKCGNLDLACRVFDTME----EKNEVSWNSIIAAYGNHGRLKDS 537

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F  M    ++PD +  + ++SAC   G +  GI   R +T+    +   +  +  ++
Sbjct: 538 LNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTE-ELGIMARMEHYACMV 596

Query: 267 DMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEA 309
           D++ + G +  A  + + MP   +   W +++      G  + A
Sbjct: 597 DLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELA 640


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/495 (38%), Positives = 284/495 (57%), Gaps = 9/495 (1%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L P       +L++C   ++++ G+Q+HA         +  +   L+ LY VC  + +  
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS-FFDMCQANLRPDGMILVIVLSA 231
            LF   + P+   ++  W  LI+ Y   + P EA +  ++ M    L PD      VL A
Sbjct: 131 LLFD--RIPK--HNIFLWNVLIRGYA-WNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKA 185

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           C+ L  +  G +IH ++    +    DVF+  ALIDMY KCG + SAR+VFD++ V++ V
Sbjct: 186 CAALSAIEHGREIHEHVVQTGWE--KDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAV 243

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
            WNSM+A  +  G     L +   M   GL+P + TLV  +++ A+   L  G+ +H   
Sbjct: 244 LWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLS 303

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            +    +   +  ALVDMYAKCG +  A  +F  +  + V S+ AMI G A+HG A +AL
Sbjct: 304 WRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEAL 363

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
           D+F EM++V  +PD +TFVGVLSACSH GL+EEG   F  M R Y + P  +HY CMVDL
Sbjct: 364 DLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDL 422

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
            G +G + EA +LI  M ++PD+ VWGALL +CKIHA VEL EI +E L+  EP+  G Y
Sbjct: 423 LGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNY 482

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           ++++NIY+   +W+   KLRK M +R++KK+  CS +EV  + + F  GD SHP + EIY
Sbjct: 483 VILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIY 542

Query: 592 KLLDEIMHQSKNHGY 606
             L+ +    K  GY
Sbjct: 543 SELERVGGLMKEAGY 557



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 180/357 (50%), Gaps = 14/357 (3%)

Query: 82  QVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            ++L+N +I+  +   P EA + LY +M   GL+P+ +T P+VLKAC    ++  G+++H
Sbjct: 140 NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIH 199

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            + ++T    +V+V   L+ +YA CG + +  ++F         RD V W +++ AY + 
Sbjct: 200 EHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVF----DKILVRDAVLWNSMLAAYSQN 255

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
            +P   +    +M    LRP    LV  +SA +    L  G ++H       F     V 
Sbjct: 256 GHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKV- 314

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
              AL+DMY KCG++  AR +F+ + VK VVSWN+MI G    G   EALD+F  M  + 
Sbjct: 315 -KTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA 373

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWV--HTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            KPD  T V VL++C++ G LE G W+   T +    I+        +VD+    GR+D+
Sbjct: 374 -KPDHITFVGVLSACSHGGLLEEG-WMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDE 431

Query: 379 AFGVFRSMKC-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           A+ +   MK   D   + A++    IH      L   +    + +EPD+     +LS
Sbjct: 432 AYNLIMQMKVLPDSGVWGALLNSCKIHANV--ELGEIALERLIELEPDDAGNYVILS 486



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 136/313 (43%), Gaps = 20/313 (6%)

Query: 41  KQFHAFIIKTGSPQH-----QTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS- 94
           ++ H  +++TG  +          +Y K   +    E+ +  L    V L+N ++   S 
Sbjct: 196 REIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAV-LWNSMLAAYSQ 254

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N +P   ++L  EM++ GL P   TL   + A   + +L  G+++H  S +    S+  V
Sbjct: 255 NGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKV 314

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
              L+ +YA CG ++    LF         + +VSW  +I  Y    + TEA L  F+  
Sbjct: 315 KTALVDMYAKCGSVRVARNLF----ERLGVKRVVSWNAMITGYAMHGHATEA-LDLFEEM 369

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
               +PD +  V VLSACS  G L  G      +  + + + P V  +  ++D+    G 
Sbjct: 370 NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRD-YKIDPTVQHYTCMVDLLGHSGR 428

Query: 275 IPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
           +  A  +  +M V  +   W +++         +       R+  + L+PDD     +L 
Sbjct: 429 LDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERL--IELEPDDAGNYVIL- 485

Query: 334 SCANIGWLELGKW 346
             +NI + + GKW
Sbjct: 486 --SNI-YAQAGKW 495


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 199/568 (35%), Positives = 310/568 (54%), Gaps = 62/568 (10%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI ++ +M+   +LP  +TL  VL +C  + S  +G++VH++ +K  L + V V N+L+
Sbjct: 90  DAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLL 149

Query: 160 RLYAVCGLIKAVHKLF---HFRQHPQ------------------------AQRDLVSWTT 192
            +YA  G +K    +F     R                            ++RD+VSW +
Sbjct: 150 NMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNS 209

Query: 193 LIQAYVKMDYPTEAILSFFD--MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
           +I    +  +  EA L FF   +   +L+PD   L   LSAC+ L  LS G +IH YI  
Sbjct: 210 MIAGCNQHGFDNEA-LQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVR 268

Query: 251 NHFNLSP-------------------------------DVFIHNALIDMYLKCGNIPSAR 279
             F+ S                                DV    AL++ Y+K G+I  AR
Sbjct: 269 TMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPAR 328

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++F+ +   +VV+W +MI G    G   +A+++F+ M   G +P+ FTL  +L++ +++ 
Sbjct: 329 QIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVT 388

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-CRDVYSYTAMI 398
            L  GK +H    ++       +GNAL  MYAK G I+ A  VF  ++  RD  S+T+MI
Sbjct: 389 SLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMI 448

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
           + LA HG   +A+++F +M  +GI+PD +T+VGVLSAC+H GLVE+G  +F  M  V+ +
Sbjct: 449 MALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKI 508

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P   HY CMVDLFGRAGL++EA   +++MP+ PD   WG+LL +CK++  V+LA++  E
Sbjct: 509 DPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAE 568

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            L+  EP   GAY  + N+YSS  +W +A K+RK MK R VKK  G S V++  + + F 
Sbjct: 569 RLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFG 628

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             D  HP+  EIYK++D+I  + K  G+
Sbjct: 629 VEDGLHPQKDEIYKMMDKIWKEIKKMGF 656



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 140/508 (27%), Positives = 216/508 (42%), Gaps = 109/508 (21%)

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
           +   + +NT++  YA  G ++  H++F         RD VSWTT+I  Y +M    +AI 
Sbjct: 38  VKTTFSWNTILSGYAKQGKLEKAHQVFDL----IPVRDSVSWTTIIVGYNQMGRFEDAIK 93

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F DM +  + P    L  VL++C+  G   +G K+H ++      L   V + N+L++M
Sbjct: 94  IFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVV--KLGLHACVPVANSLLNM 151

Query: 269 YLKCGNIPSARKVFDEMPVKN-------------------------------VVSWNSMI 297
           Y K G++  A+ VFD M ++N                               +VSWNSMI
Sbjct: 152 YAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMI 211

Query: 298 AGLTHRGQFKEALDIFRR-MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           AG    G   EAL  F   ++   LKPD F+L   L++CAN+  L  GK +H Y+ +   
Sbjct: 212 AGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMF 271

Query: 357 NTDGFIGNALVDMYAKCG------RIDQAFG---------------------------VF 383
           +  G +GNAL+ MYAK G      RI +  G                           +F
Sbjct: 272 DASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIF 331

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS------ 437
            S+K  DV ++TAMIVG   +G    A+++F  M   G  P+  T   +LSA S      
Sbjct: 332 NSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLN 391

Query: 438 -----HAGLVEEG-----------------CKHFLDMSRVYNLQPQ---TEHYGCMVDLF 472
                HA  +  G                         +V+NL  Q   T  +  M+   
Sbjct: 392 HGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMAL 451

Query: 473 GRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEI---VMENLVRFEPE 526
            + GL  EA++L + M    + PD   +  +L AC     VE       +M+N+ + +P 
Sbjct: 452 AQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPT 511

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKM 554
               Y  M +++      +EA K  + M
Sbjct: 512 L-SHYACMVDLFGRAGLLQEAYKFVENM 538



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 34/220 (15%)

Query: 253 FNLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
           FN  P    F  N ++  Y K G +  A +VFD +PV++ VSW ++I G    G+F++A+
Sbjct: 33  FNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAI 92

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
            IF  M    + P  FTL  VL SCA  G   +GK VH+++ K  ++    + N+L++MY
Sbjct: 93  KIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMY 152

Query: 371 AK-------------------------------CGRIDQAFGVFRSMKCRDVYSYTAMIV 399
           AK                               CGR+D A   F  +  RD+ S+ +MI 
Sbjct: 153 AKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIA 212

Query: 400 GLAIHGKAWKALDIFSE-MSQVGIEPDEVTFVGVLSACSH 438
           G   HG   +AL  FS  +    ++PD  +    LSAC++
Sbjct: 213 GCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACAN 252



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 155/334 (46%), Gaps = 45/334 (13%)

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYN-FIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           Y K+  ++   +I N SL++P V  +   I+  + N    +AI +++ M+ +G  PN++T
Sbjct: 318 YVKLGDITPARQIFN-SLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFT 376

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-FR 178
           L  +L A     SL  G+Q+HA ++++    +  V N L  +YA  G I    K+F+  R
Sbjct: 377 LAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLR 436

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
           Q+    RD VSWT++I A  +     EAI  F  M    ++PD +  V VLSAC+  G +
Sbjct: 437 QN----RDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLV 492

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMI 297
             G      + + H  + P +  +  ++D++ + G +  A K  + MP++ +V++W S+ 
Sbjct: 493 EQGRSYFDLMKNVH-KIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSL- 550

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
                                             L+SC     ++L K     L     N
Sbjct: 551 ----------------------------------LSSCKVYKNVDLAKVAAERLLLIEPN 576

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
             G   +AL ++Y+ CG+ D A  + + MK R V
Sbjct: 577 NSGAY-SALANVYSSCGKWDDAAKIRKLMKARGV 609



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
           ++ N L+++YAK G    A  +F  M  +  +S+  ++ G A  GK  KA  +F  +   
Sbjct: 11  YLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPV- 69

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
               D V++  ++   +  G  E+  K F+DM +
Sbjct: 70  ---RDSVSWTTIIVGYNQMGRFEDAIKIFVDMVK 100


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/512 (37%), Positives = 295/512 (57%), Gaps = 10/512 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EAI L+ EM++ G  P+ +TL  V+ AC   + L +GQQ+H+ +++  L  +  V   L+
Sbjct: 254 EAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313

Query: 160 RLYAVC---GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV-KMDYPTEAILSFFDMCQ 215
            +YA C   G + A  K+F          ++ SWT +I  YV K  Y  EA+  F  M  
Sbjct: 314 NMYAKCSVDGSMCAARKIFD----QILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL 369

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
            ++ P+       L AC+ L  L +G ++  +     F  S    + N+LI MY + G I
Sbjct: 370 THVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGF--SSVNCVANSLISMYARSGRI 427

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             ARK FD +  KN++S+N++I         +EAL++F  ++  G+    FT   +L+  
Sbjct: 428 DDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGA 487

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A+IG +  G+ +H  + K+ +  +  + NAL+ MY++CG I+ AF VF  M+ R+V S+T
Sbjct: 488 ASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWT 547

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           ++I G A HG A +AL++F +M + G+ P+ VT++ VLSACSH GLV EG KHF  M   
Sbjct: 548 SIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTE 607

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + + P+ EHY CMVD+ GR+G + EA+  I SMP   DA VW   LGAC++H  +EL + 
Sbjct: 608 HGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKH 667

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             + ++  EP    AYIL++N+Y+S ++W E   +RK MKE+ + K  GCS VEV  + +
Sbjct: 668 AAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVH 727

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +F  GD SHPK  EIY  L  +  + K  GY+
Sbjct: 728 KFYVGDTSHPKAAEIYDELQNLSVKIKKLGYV 759



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 227/462 (49%), Gaps = 21/462 (4%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +  NP   L   +IQ ++N    +AI+    M+ +G  P+  T    LK C +++S  +G
Sbjct: 27  TFTNPNP-LTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIG 85

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
             VH    ++ L  +    N+L+ LY+ CG  +    +F   Q   + RDL+SW+ ++  
Sbjct: 86  TLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF---QLMGSSRDLISWSAMVSC 142

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           +   +    A+L+F DM +    P+         ACS    +S+G  I  ++    + L 
Sbjct: 143 FANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGY-LQ 201

Query: 257 PDVFIHNALIDMYLKC-GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
            DV +   LIDM++K  G++ SA KVF++MP +N V+W  MI  L   G   EA+D+F  
Sbjct: 202 SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLE 261

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC-- 373
           M   G +PD FTL  V+++CAN+  L LG+ +H+   ++ +  D  +G  L++MYAKC  
Sbjct: 262 MILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSV 321

Query: 374 -GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK-AWKALDIFSEMSQVGIEPDEVTFVG 431
            G +  A  +F  +   +V+S+TAMI G    G    +ALD+F  M    + P+  TF  
Sbjct: 322 DGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSS 381

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI---REALDLIKSM 488
            L AC++   +  G + F    ++            ++ ++ R+G I   R+A D++   
Sbjct: 382 TLKACANLAALRIGEQVFTHAVKL-GFSSVNCVANSLISMYARSGRIDDARKAFDILFEK 440

Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
            L+    V  A       +AK   +E  +E     E +G GA
Sbjct: 441 NLISYNTVIDA-------YAKNLNSEEALELFNEIEDQGMGA 475



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           YN +I   + N N  EA+ L+ E+  +G+  + +T   +L       ++  G+Q+HA  +
Sbjct: 445 YNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVI 504

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K+ L  N  V N L+ +Y+ CG I++  ++F         R+++SWT++I  + K  + T
Sbjct: 505 KSGLKLNQSVCNALISMYSRCGNIESAFQVF----EDMEDRNVISWTSIITGFAKHGFAT 560

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           +A+  F  M +  +RP+ +  + VLSACS +G ++ G K  + +   H  + P +  +  
Sbjct: 561 QALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEH-GVIPRMEHYAC 619

Query: 265 LIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFK 307
           ++D+  + G++  A +  + MP K + + W + +      G  +
Sbjct: 620 MVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLE 663


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/573 (33%), Positives = 319/573 (55%), Gaps = 15/573 (2%)

Query: 42  QFHAFIIKTG-SPQ----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H+  +K G  P+    +    +Y K   L     +  L  Q+  V     I  C+ N 
Sbjct: 263 QLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNG 322

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
             +EA  L+ +M   G  P++ TL  +L A      L+ G++VH Y ++  +  +V++ +
Sbjct: 323 LFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVS 382

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQR--DLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            L+ +Y  C  ++    L+       A R  D+V  +T+I  YV      EA+  F  + 
Sbjct: 383 ALVDIYFKCRDVRMAQNLY------DAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLL 436

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  ++P+ + +  VL  C+ +  L LG +IH Y+  N +      ++ +AL+DMY KCG 
Sbjct: 437 EQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERK--CYVESALMDMYAKCGR 494

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  +  +F +M  K+ V+WNSMI+  +  G+ +EALD+FR+M   G+K ++ T+   L++
Sbjct: 495 LDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSA 554

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA++  +  GK +H    K  I  D F  +AL+DMYAKCG ++ A  VF  M  ++  S+
Sbjct: 555 CASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSW 614

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            ++I     HG   +++ +   M + G +PD VTF+ ++SAC+HAGLVEEG + F  M++
Sbjct: 615 NSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTK 674

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y + P+ EH+ CMVDL+ R+G + +A+  I  MP  PDA +WGALL AC++H  VELA+
Sbjct: 675 KYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELAD 734

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
           I  + L + +P   G Y+LM+NI +   RW    K+R+ MK+ K+ K PG S V+V    
Sbjct: 735 IASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSS 794

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + F   DKSHP++ +IY  L  ++ + +  GY+
Sbjct: 795 HLFVASDKSHPESEDIYTSLKTLLQELREEGYV 827



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 147/507 (28%), Positives = 245/507 (48%), Gaps = 44/507 (8%)

Query: 85  LYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           L+N ++  C+   +   A+ L+R M   G  PN  TL   L  C     L  G Q+H+ +
Sbjct: 209 LWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLA 268

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K  L   V V NTL+ +YA C  +    +LF        Q DLV+W  +I   V+    
Sbjct: 269 VKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFEL----MPQDDLVTWNGMISGCVQNGLF 324

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EA   F+DM ++  RPD + LV +L A + L  L  G ++H YI  N  N+  DVF+ +
Sbjct: 325 VEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNM--DVFLVS 382

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL+D+Y KC ++  A+ ++D     +VV  ++MI+G    G  +EAL +FR +    +KP
Sbjct: 383 ALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKP 442

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           +  T+  VL  CA++  L LG+ +H Y+ +N      ++ +AL+DMYAKCGR+D +  +F
Sbjct: 443 NAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIF 502

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             M  +D  ++ +MI   + +GK  +ALD+F +M   GI+ + +T    LSAC+    + 
Sbjct: 503 LKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIY 562

Query: 444 EG----------------------------CKHFLDMSRVYNLQPQTEH--YGCMVDLFG 473
            G                            C +     RV+   P      +  ++  +G
Sbjct: 563 YGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYG 622

Query: 474 RAGLIREALDLIKSMP---LVPDAFVWGALLGACKIHAKVELAEIVMENLVR---FEPEG 527
             GL++E++ L+  M      PD   + AL+ AC     VE    + + + +     P  
Sbjct: 623 AHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRM 682

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKM 554
           +  +  M ++YS   +  +A++    M
Sbjct: 683 E-HFACMVDLYSRSGKLDKAIQFIADM 708



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 187/363 (51%), Gaps = 9/363 (2%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P+ +TLPYV+K+C    ++ +G+ VH  +    L ++VYV + L+++YA  GL+      
Sbjct: 139 PDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDA 198

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F        +RD V W  ++   +K      A+  F +M  +   P+   L   LS C+ 
Sbjct: 199 F----DGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCAT 254

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
             DL  G ++H         L P+V + N L+ MY KC  +  A ++F+ MP  ++V+WN
Sbjct: 255 DADLLSGAQLHSLAV--KCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWN 312

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
            MI+G    G F EA  +F  MQ  G +PD  TLV +L +  ++  L+ GK VH Y+ +N
Sbjct: 313 GMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRN 372

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            +N D F+ +ALVD+Y KC  +  A  ++ + +  DV   + MI G  ++G + +AL +F
Sbjct: 373 CVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMF 432

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFG 473
             + +  I+P+ VT   VL  C+    +  G + H   +   Y  +   E    ++D++ 
Sbjct: 433 RYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVE--SALMDMYA 490

Query: 474 RAG 476
           + G
Sbjct: 491 KCG 493



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 161/328 (49%), Gaps = 8/328 (2%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSN---VYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           VL+ C  +  L +G Q+HA ++ +  LS+   + +   L+ +Y +    +    +F    
Sbjct: 38  VLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ--ANLRPDGMILVIVLSACSKLGD 237
              A   L  W  LI+ +        A+L +  M    A   PD   L  V+ +C+ LG 
Sbjct: 98  RAAAASSL-PWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGA 156

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           +SLG  +HR  T     L+ DV++ +AL+ MY   G + +AR  FD +P ++ V WN M+
Sbjct: 157 MSLGRLVHR--TARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMM 214

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
            G    G    A+ +FR M+  G +P+  TL C L+ CA    L  G  +H+   K  + 
Sbjct: 215 DGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLE 274

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            +  + N L+ MYAKC  +D A+ +F  M   D+ ++  MI G   +G   +A  +F +M
Sbjct: 275 PEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDM 334

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEG 445
            + G  PD +T V +L A +    +++G
Sbjct: 335 QRSGARPDSITLVSLLPALTDLNGLKQG 362



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 124/287 (43%), Gaps = 10/287 (3%)

Query: 225 LVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
           L+ VL  C     L LG++IH R +     +    + +H  L+ MY+       A  VF 
Sbjct: 35  LLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFS 94

Query: 284 EMPVKNVVS---WNSMIAGLTHRGQFKEALDIFRRM--QGLGLKPDDFTLVCVLNSCANI 338
            +P     S   WN +I G T  GQ   A+  + +M        PD  TL  V+ SCA +
Sbjct: 95  ALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAAL 154

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G + LG+ VH       +  D ++G+ALV MYA  G +  A   F  +  RD   +  M+
Sbjct: 155 GAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMM 214

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC-SHAGLVEEGCKHFLDMSRVYN 457
            G    G    A+ +F  M   G EP+  T    LS C + A L+     H L +     
Sbjct: 215 DGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVK--CG 272

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           L+P+      ++ ++ +   + +A  L + MP   D   W  ++  C
Sbjct: 273 LEPEVAVANTLLAMYAKCQCLDDAWRLFELMP-QDDLVTWNGMISGC 318


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/588 (32%), Positives = 338/588 (57%), Gaps = 30/588 (5%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQ 82
           L++  +  +  Q HA  IKT S  H +  +  ++++L     I NL         +Q P 
Sbjct: 22  LQNCGTEREANQLHALSIKTASLNHPS--VSSRLLALYADPRINNLQYAHSLFDWIQEPT 79

Query: 83  VYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           +  +N +I+C + N    +AIAL+ ++L    +P+++TLP VLK C +  +L+ G+Q+H 
Sbjct: 80  LVSWNLLIKCYIENQRSNDAIALFCKLLCD-FVPDSFTLPCVLKGCARLGALQEGKQIHG 138

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             +K     + +V ++L+ +Y+ CG I+   K+F   +     +D+VSW +LI  Y +  
Sbjct: 139 LVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRME----DKDVVSWNSLIDGYARCG 194

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP--DV 259
               A+  F +M +     D     I++   SK G L     +        F+  P  + 
Sbjct: 195 EIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAARDV--------FDRMPIRNS 242

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
              NA+I+ Y+K G+  +A+++FD+MP +++V+WNSMI G     QF +AL +F  M   
Sbjct: 243 VSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLRE 302

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            + P+  T++  +++ + +  L  G+WVH+Y+ K+   TDG +G  L++MY+KCG +  A
Sbjct: 303 DISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSA 362

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             VFRS+  + +  +T++IVGL +HG   + L++F EM + G++P  +TF+GVL+ACSHA
Sbjct: 363 LRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHA 422

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           G  E+  ++F  M+  Y ++P  EHYGC++D+  RAG + EA D I+ MP+  +  +W +
Sbjct: 423 GFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTS 482

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           LL   + H  + + E   ++L+   P+  G Y++++N+Y++   W++  ++R+ MK++ +
Sbjct: 483 LLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGM 542

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           KK PGCS +E  G  +EF  GDKSHP+T EIY  L E+  +    G+I
Sbjct: 543 KKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHI 590


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 177/485 (36%), Positives = 280/485 (57%), Gaps = 7/485 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           ++ AC + +SL   + +HA+   +    +V++ N+L+ LY  CG +    ++F       
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFD----GM 125

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
             RD+ SWT+LI  Y + D P EA+     M +   +P+G     +L A        +G 
Sbjct: 126 PARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           +IH       ++   DV++ +AL+DMY +CG +  A  VFD++  KN VSWN++IAG   
Sbjct: 186 QIHALTVK--YDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 243

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
           +G  +  L +F  MQ  G +   FT   V ++ A IG LE GKWVH ++ K+      F+
Sbjct: 244 KGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFV 303

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           GN ++DMYAK G +  A  VF  +  +DV ++ +M+   A +G   +A+  F EM + G+
Sbjct: 304 GNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGV 363

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
             +++TF+ +L+ACSH GLV+EG K + DM + YNL+P+ +HY  +VDL GRAGL+ +AL
Sbjct: 364 HLNQITFLSILTACSHGGLVKEG-KQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDAL 422

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
             I  MP+ P A VWGALLG+C++H   ++ +   +++   +P+  G  +L+ NIY+S  
Sbjct: 423 VFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTG 482

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           +W  A ++RK MK   VKK P CS VE+    + F   D +HP++ EIYK  +EI  Q +
Sbjct: 483 QWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIR 542

Query: 603 NHGYI 607
             GY+
Sbjct: 543 KAGYV 547



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 6/286 (2%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N  P EA+ L   ML     PN +T   +LKA   S S  +G+Q+HA ++K     +VYV
Sbjct: 143 NDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYV 202

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +YA CG +     +F   +     ++ VSW  LI  + +       +L F +M 
Sbjct: 203 GSALLDMYARCGRMDMAIAVFDQLE----SKNGVSWNALIAGFARKGDGETTLLMFAEMQ 258

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +            V SA + +G L  G  +H ++  +   LS   F+ N ++DMY K G+
Sbjct: 259 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLS--AFVGNTILDMYAKSGS 316

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  ARKVFD +  K+VV+WNSM+      G  +EA+  F  M+  G+  +  T + +L +
Sbjct: 317 MIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTA 376

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           C++ G ++ GK     + + ++  +      +VD+  + G ++ A 
Sbjct: 377 CSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDAL 422


>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
 gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
          Length = 528

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 290/508 (57%), Gaps = 38/508 (7%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVY-VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDL 187
           Q + LR  Q++HA ++   L  +   V   + R YA  G +    KLF    +P    DL
Sbjct: 23  QCKKLRELQRIHALAIAHGLHPHQQSVSCKIFRCYADFGRVADARKLFDEIPNP----DL 78

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
           +S+T+L+  ++++D   EAI  F  +  A  RPDG  +V  LSA S  GD  +G  +H  
Sbjct: 79  ISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVGRAVHGL 138

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM---------------------- 285
           I      L  +V + NALIDMY +CG   SA KVFD M                      
Sbjct: 139 IF--RLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGVD 196

Query: 286 ---------PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
                    PV++VV+W ++I G     Q   AL++F RM   G +P   T+V VL++CA
Sbjct: 197 SALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSACA 256

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           +IG L+LG+ +H Y  K + + +  + NAL+DMYAK G I+ AF VF+ ++ +D +++T 
Sbjct: 257 DIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTT 316

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           MI    + G   KAL++F +M + G+ P+ VTFV VLSACSH+GL+EEG + F  M ++Y
Sbjct: 317 MISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLY 376

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            + P  EHYGCM+DL GR GL+ EA  LI  M + PD  +W +LL AC +     LAEI 
Sbjct: 377 KIDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIA 436

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            + +V+ EP  DG Y+L+ N+Y+S N+W+EA ++R++M   K+ K PGCS +E+ G  +E
Sbjct: 437 GKEIVKREPGDDGVYVLLWNMYASSNKWREAREMRQQMLSLKIFKKPGCSWIEIDGAVHE 496

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
           F   DK+H    EIY+ L+ +  Q K H
Sbjct: 497 FLVEDKTHDARREIYETLEYMSRQLKTH 524



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 171/373 (45%), Gaps = 47/373 (12%)

Query: 7   VASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI---LYDK 63
           VAS  RY + +    L        L   K + +L++ HA  I  G   HQ  +   ++  
Sbjct: 5   VASRGRYMNRSVCHHL--------LAQCKKLRELQRIHALAIAHGLHPHQQSVSCKIFRC 56

Query: 64  IISLSRGNEIENL--SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTL 120
                R  +   L   + NP +  +  ++   L   N  EAI+L+  ++  G  P+ + +
Sbjct: 57  YADFGRVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAV 116

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH---- 176
              L A   +    VG+ VH    +  L   V V N L+ +Y+ CG  ++  K+F     
Sbjct: 117 VGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSL 176

Query: 177 -------------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
                                    F Q P   R +V+WT LI  +V+   P  A+  F 
Sbjct: 177 KDEVTWGSMLHGYIKCAGVDSALSFFDQVP--VRSVVAWTALITGHVQGRQPVRALELFG 234

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            M     RP  + +V VLSAC+ +G L LG  IH Y   +  N S ++ + NAL+DMY K
Sbjct: 235 RMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGY--GSKCNASLNIIVSNALMDMYAK 292

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
            G+I  A  VF E+  K+  +W +MI+  T +G  K+AL++F+ M   G+ P+  T V V
Sbjct: 293 SGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSV 352

Query: 332 LNSCANIGWLELG 344
           L++C++ G +E G
Sbjct: 353 LSACSHSGLIEEG 365



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 41/290 (14%)

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
            P+ A+ L+  M+++G  P   T+  VL AC    +L +G+ +H Y  K     N+ V N
Sbjct: 225 QPVRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSN 284

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            LM +YA  G I+    +F   Q     +D  +WTT+I          +A+  F DM +A
Sbjct: 285 ALMDMYAKSGHIEMAFSVFQEVQ----SKDSFTWTTMISCCTVQGDGKKALELFQDMLRA 340

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            + P+ +  V VLSACS  G +  GI++   +    + + P +  +  +ID+  + G + 
Sbjct: 341 GVVPNSVTFVSVLSACSHSGLIEEGIELFDRMR-QLYKIDPLLEHYGCMIDLLGRGGLLE 399

Query: 277 SARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEA----LDIFRRMQGLGLKPDDFTLVCV 331
            A  +  +M V+ ++V W S+++    RG  + A     +I +R  G     DD   V +
Sbjct: 400 EAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIAGKEIVKREPG-----DDGVYVLL 454

Query: 332 LNSCAN------------------------IGWLELGKWVHTYL--DKNH 355
            N  A+                          W+E+   VH +L  DK H
Sbjct: 455 WNMYASSNKWREAREMRQQMLSLKIFKKPGCSWIEIDGAVHEFLVEDKTH 504


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 316/572 (55%), Gaps = 12/572 (2%)

Query: 41  KQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           KQ H +++++G     + +      Y K   +  G ++ +  +    V     I  C+ N
Sbjct: 262 KQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQN 321

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           +   +A+ L+ EM   G  P+ +    VL +C    +L  G+QVHAY++K  + ++ +V 
Sbjct: 322 SFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVK 381

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ +YA C  +    K+F+      A  DLVS+  +I+ Y + D   EA+  F +M  
Sbjct: 382 NGLIDMYAKCDSLTDARKVFNL----MAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRL 437

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
           +   P  +I V +L   + L  L L  +IH  I    + +S D F  +ALID+Y KC  +
Sbjct: 438 SLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIK--YGVSLDEFAGSALIDVYSKCSRV 495

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             AR VF+E+  K++V W +M +G T + + +E+L +++ +Q   LKP++FT   V+ + 
Sbjct: 496 GDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAA 555

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           +NI  L  G+  H  + K   + D F+ N LVDMYAK G I++A   F S   +D   + 
Sbjct: 556 SNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWN 615

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI   A HG+A KAL +F +M   G++P+ VTFVGVLSACSH GL++ G  HF  MS+ 
Sbjct: 616 SMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQ- 674

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + ++P  EHY CMV L GRAG + EA + I+ MP+   A VW +LL AC++   VEL   
Sbjct: 675 FGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGTY 734

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             E  +   P   G+Y+L++NI++SK  W    +LR+KM    V K PGCS +EV  E +
Sbjct: 735 AAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRLREKMDISGVVKEPGCSWIEVNNEIH 794

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +F   D +H  +  I  +LD ++ Q K  GY+
Sbjct: 795 KFIAKDTAHRDSAPISLVLDNLLLQIKGFGYM 826



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 176/613 (28%), Positives = 273/613 (44%), Gaps = 84/613 (13%)

Query: 14  NDINTFQQL---SLLHQ--SPRLE---SSKSVGQ-------------LKQFHAFIIKTGS 52
           N IN  Q L   +LLHQ   PR+      + +G+              K+ H+ I+  G 
Sbjct: 10  NKINVIQTLHFSTLLHQFLEPRIPPIIEQRKIGRELANLLQSPHIPCCKKIHSKIVVFGF 69

Query: 53  PQHQTQIL------YDKIISLSRGNEI------ENLSLQNPQVYLYNFIIQCLSNANPLE 100
            +H   ++      Y K+  ++  N++      +NL   +  V +Y     CL      E
Sbjct: 70  HKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCL------E 123

Query: 101 AIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           A+ L+ + +      PN Y L  V++AC Q   L    Q+H   +K   + +VYV  +L+
Sbjct: 124 ALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLI 183

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
             Y     I     LF   Q   +     +WTT+I  Y K      ++  F  M + ++ 
Sbjct: 184 DFYTKHACIDDARLLFDGLQVKTS----FTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVC 239

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD  +L  VLSAC  L  L  G +IH Y+  +   +  DV + N  ID Y KC  +   R
Sbjct: 240 PDKYVLSSVLSACLMLKFLEGGKQIHCYVLRS--GIVMDVSMVNGFIDFYFKCHKVQLGR 297

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           K+FD M  KNVVSW ++IAG       ++ALD+F  M  +G  PD F    VLNSC ++ 
Sbjct: 298 KLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLV 357

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            LE G+ VH Y  K +I+ D F+ N L+DMYAKC  +  A  VF  M   D+ SY AMI 
Sbjct: 358 ALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIE 417

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G +   K  +ALD+F EM      P  + FV +L        V     H    ++++ L 
Sbjct: 418 GYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLG-------VSASLYHLELSNQIHGLI 470

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
            +   YG  +D F  + LI    D+      V D              A++   EI  ++
Sbjct: 471 IK---YGVSLDEFAGSALI----DVYSKCSRVGD--------------ARLVFEEIQDKD 509

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK--KMKERKVKKTPGCSLVEVYGEFYEF 577
           +V         +  M + Y+ ++  +E+LKL K  +M   K  +    +++         
Sbjct: 510 IV--------VWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASL 561

Query: 578 RKGDKSHPKTLEI 590
           R G + H + +++
Sbjct: 562 RHGQQFHNQVIKM 574



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 213/421 (50%), Gaps = 8/421 (1%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           ++ L+ +M    + P+ Y L  VL AC   + L  G+Q+H Y +++ ++ +V + N  + 
Sbjct: 226 SLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFID 285

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
            Y  C  ++   KLF         +++VSWTT+I   ++  +  +A+  F +M +    P
Sbjct: 286 FYFKCHKVQLGRKLF----DRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNP 341

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D      VL++C  L  L  G ++H Y      N+  D F+ N LIDMY KC ++  ARK
Sbjct: 342 DAFGCTSVLNSCGSLVALEKGRQVHAYAIK--VNIDNDDFVKNGLIDMYAKCDSLTDARK 399

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VF+ M   ++VS+N+MI G + + +  EALD+FR M+     P     V +L   A++  
Sbjct: 400 VFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYH 459

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           LEL   +H  + K  ++ D F G+AL+D+Y+KC R+  A  VF  ++ +D+  +TAM  G
Sbjct: 460 LELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSG 519

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
                +  ++L ++  +    ++P+E TF  V++A S+   +  G + F +         
Sbjct: 520 YTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHG-QQFHNQVIKMGFDD 578

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
                  +VD++ ++G I EA     S     D   W +++     H + E A  V E++
Sbjct: 579 DPFVANTLVDMYAKSGSIEEAHKAFISTNW-KDTACWNSMIATYAQHGEAEKALQVFEDM 637

Query: 521 V 521
           +
Sbjct: 638 I 638


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 318/569 (55%), Gaps = 64/569 (11%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           AI ++ +M+ + + P+ +T+  VL +C  +Q+L +G+++H++ +K  L S V V  +L+ 
Sbjct: 126 AIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLN 185

Query: 161 LYAVCGLIKAVHKLF-----------------------------HFRQHPQAQRDLVSWT 191
           +YA CG       +F                              F + P   RD+VSW 
Sbjct: 186 MYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPD--RDIVSWN 243

Query: 192 TLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI-- 248
           ++I  Y +  Y  EA++ F  M  + +L+PD   L  +LSAC+ L  L++G +IH YI  
Sbjct: 244 SMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILR 303

Query: 249 -----------------------------TDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
                                         +++   + ++    +L+D Y K GN+  AR
Sbjct: 304 AETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAR 363

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++F+++  ++VV+W +MI G    G + +AL++FR M   G +P+ +TL  +L+  +++ 
Sbjct: 364 EIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLT 423

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR-SMKCRDVYSYTAMI 398
            LE GK +H    K   ++   + NAL+ MYAK G I+ A  VF      +++ S+T+MI
Sbjct: 424 ILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMI 483

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
           + LA HG   +A+++F  M  VG++PD +T+VGVLSAC+H GLVE+G K++  M+ V+ +
Sbjct: 484 MALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEI 543

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +P   HY CM+DL+GRAGL++EA   I+SMP+ PD   WG+LL +CKIH   +LA++  E
Sbjct: 544 EPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAE 603

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            L+  +P   GAY+ + N+YS+  +W+ A + RK MK+R V+K  G S + +  E + F 
Sbjct: 604 RLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFG 663

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             D  HP+  EIYKL+ EI  + K  G+I
Sbjct: 664 VEDVIHPQKDEIYKLMAEIWEEIKKMGFI 692



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 218/507 (42%), Gaps = 109/507 (21%)

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           +P    +++ +++ KGL    Y +  ++    ++ SLR    V         L + + +N
Sbjct: 25  DPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHV----FDEMPLKSTFSWN 80

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
           TL+  YA  G  +   +L +  + P    D VSWT +I  Y +      AI  F  M   
Sbjct: 81  TLISGYAKQGNFEVSRRLLY--EMPDC--DPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            + P    +  VLS+C+    L +G KIH ++      L   V +  +L++MY KCG+  
Sbjct: 137 RVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVK--LGLGSCVPVATSLLNMYAKCGDPV 194

Query: 277 SARKVFDEMPVKN-------------------------------VVSWNSMIAGLTHRGQ 305
            A+ VFD M VKN                               +VSWNSMI+G + +G 
Sbjct: 195 IAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254

Query: 306 FKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
             EAL IF +M     LKPD+FTL  +L++CAN+  L +GK +H Y+ +    T G +GN
Sbjct: 255 NLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGN 314

Query: 365 ALVDMYAKCGRID---------------------------------QAFGVFRSMKCRDV 391
           AL+ MYAK G ++                                  A  +F  ++ RDV
Sbjct: 315 ALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDV 374

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------ 445
            ++TAMIVG   +G    AL++F  M   G EP+  T   +LS  S   ++E G      
Sbjct: 375 VAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHAS 434

Query: 446 ------------CKHFLDM----------SRVYNL---QPQTEHYGCMVDLFGRAGLIRE 480
                           + M           RV++L   + +   +  M+    + GL +E
Sbjct: 435 AIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKE 494

Query: 481 ALDLIKSMPLV---PDAFVWGALLGAC 504
           A++L + M  V   PD   +  +L AC
Sbjct: 495 AINLFERMLSVGMKPDHITYVGVLSAC 521



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 5/239 (2%)

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTL 120
           Y K+ ++    EI N       V     I+  + N    +A+ L+R M+ +G  PN+YTL
Sbjct: 353 YTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTL 412

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
             +L        L  G+Q+HA ++K    S   V N L+ +YA  G I    ++F     
Sbjct: 413 AAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDL--- 469

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
           P  ++++VSWT++I A  +     EAI  F  M    ++PD +  V VLSAC+ +G +  
Sbjct: 470 PNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQ 529

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIA 298
           G K +  +T+ H  + P +  +  +ID+Y + G +  A    + MP++ + ++W S++A
Sbjct: 530 GRKYYNMMTEVH-EIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLA 587


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 299/542 (55%), Gaps = 65/542 (11%)

Query: 121 PYVLKACWQS-QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG----LIKAVHKLF 175
           P +L   + S ++ R  +Q+HA  +KT  + +      +++  A         +AV    
Sbjct: 19  PLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAV---- 74

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMD---YPTEAILSFFDM-CQANLRPDGMILVIVLSA 231
            FRQ P+   +   W T+++   + +     +EA++ F  M C   ++P+      VL A
Sbjct: 75  -FRQMPEP--NCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKA 131

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC------------------- 272
           C++   L  G +IH  I    F    D F+ + L+ MY+ C                   
Sbjct: 132 CARASRLREGKQIHGLIVK--FGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDG 189

Query: 273 ----------------------------GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
                                       G+I SA+ +FDEMP ++VVSWN MI+G    G
Sbjct: 190 SCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNG 249

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
            F EA+++F+ MQ   + P+  TLV VL + A IG LELGKW+H Y  KN +  D  +G+
Sbjct: 250 HFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGS 309

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
           ALVDMY+KCG ID+A  VF ++  R+  +++A+I   A+HG+A  A+  F  M + G+ P
Sbjct: 310 ALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTP 369

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           ++V ++G+LSACSHAGLVEEG   F  M +V  LQP+ EHYGCMVDL GRAG + EA +L
Sbjct: 370 NDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEEL 429

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
           I++MP+ PD  +W ALLGACK+H  +++ E V E L+   P   G+Y+ ++N+Y+S   W
Sbjct: 430 IRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNW 489

Query: 545 KEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
           +   ++R KMK   ++K PGCS +E++G  +EF   D SH K  EI  +L E+  + +++
Sbjct: 490 EAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSN 549

Query: 605 GY 606
           GY
Sbjct: 550 GY 551



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 127/483 (26%), Positives = 214/483 (44%), Gaps = 107/483 (22%)

Query: 16  INTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL----SRGN 71
           +N   Q  L+   P   S K+   LKQ HA  IKTG  Q Q  +   ++I      SR  
Sbjct: 12  LNFSPQPPLILSKP-FTSCKTPRDLKQLHAIFIKTG--QIQDPLTAAEVIKFCAFSSRDI 68

Query: 72  EIENL---SLQNPQVYLYNFIIQCLSNANP----LEAIALYREMLIKGLL-PNTYTLPYV 123
           +        +  P  + +N I++ L+  N      EA+ L+  ML  G + PN +T P V
Sbjct: 69  DYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSV 128

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH------- 176
           LKAC ++  LR G+Q+H   +K     + +V + L+R+Y +C +++  + LF        
Sbjct: 129 LKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFD 188

Query: 177 --------------------------------------FRQHPQAQRDLVSWTTLIQAYV 198
                                                 F + P   R +VSW  +I  Y 
Sbjct: 189 GSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMP--PRSVVSWNVMISGYA 246

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +  +  EAI  F +M  +N+ P+ + LV VL A +++G L LG  IH Y   N   +  D
Sbjct: 247 QNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEI--D 304

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             + +AL+DMY KCG+I  A +VF+ +P +N ++W+++I      G+ ++A+  F  M  
Sbjct: 305 DVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGK 364

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-----NHINTDGFIGNALVDMYAKC 373
            G+ P+D   + +L++C++ G +E G+   +++ K       I   G     +VD+  + 
Sbjct: 365 AGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYG----CMVDLLGRA 420

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G +++A  + R+M                                   IEPD+V +  +L
Sbjct: 421 GHLEEAEELIRNMP----------------------------------IEPDDVIWKALL 446

Query: 434 SAC 436
            AC
Sbjct: 447 GAC 449



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 153/347 (44%), Gaps = 22/347 (6%)

Query: 58  QILYDKIISLSRGNEIENLSLQNP--QVYLYNFIIQCLS-NANPLEAIALYREMLIKGLL 114
            I+ D  + L      +NL  + P   V  +N +I   + N + +EAI L++EM    + 
Sbjct: 208 NIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNID 267

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           PN  TL  VL A  +  +L +G+ +H Y+ K  +  +  + + L+ +Y+ CG I    ++
Sbjct: 268 PNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQV 327

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F        +R+ ++W+ +I A+       +AI+ F  M +A + P+ +  + +LSACS 
Sbjct: 328 FE----TLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSH 383

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSW 293
            G +  G     ++      L P +  +  ++D+  + G++  A ++   MP++ + V W
Sbjct: 384 AGLVEEGRSFFSHMV-KVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIW 442

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
            +++         K    +   +  L    D  + V + N  A++G  E    V   +  
Sbjct: 443 KALLGACKMHKNLKMGERVAETLMELA-PHDSGSYVALSNLYASLGNWEAVARVRLKMKG 501

Query: 354 NHINTD---------GFIGNALV--DMYAKCGRIDQAFGVFRSMKCR 389
             I  D         G I   LV  D ++K   I    G   SMK R
Sbjct: 502 MDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEM-SMKLR 547


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 203/586 (34%), Positives = 313/586 (53%), Gaps = 58/586 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SLQNPQ 82
           L+S KS   LK+ HA +I TG  Q +   +  K +  S      N+         +  P 
Sbjct: 34  LQSCKSTEDLKKIHAQLIITG--QIKDTFIATKTVE-SYAVSARNIDYAFWVFVGINYPD 90

Query: 83  VYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
            Y +  +I+    A NP +A+  Y  M  +G+  N +T  +VLKA     S + G+ VH 
Sbjct: 91  SYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHG 150

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             +K     +V+  N L+ +Y  CG I   H LF          ++V+W T+I       
Sbjct: 151 KLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFD----EMPNHNVVTWNTMI------- 199

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
                                       + C   GD     ++   + +       +V  
Sbjct: 200 ----------------------------TGCFGCGDTERARRLFGEMPER------NVGS 225

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            NA++  Y K G++  AR +FD MP ++VVSW SMI+     G+  EAL++F+ M   G+
Sbjct: 226 WNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGV 285

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
             D   +  +L++CA IG L++G+W+H Y+ ++ +  D F+  ALVDMYAKCG ID AFG
Sbjct: 286 SADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFG 345

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF +M  +++ S+ AM+ GLAIHG  + AL++F +M   G+ P+++TFV VLSACSH G 
Sbjct: 346 VFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGS 405

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           VEEG K F  M + +N+ P+ EHYGCMVD+  R GLI EA ++I++MPL P+  +WGALL
Sbjct: 406 VEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALL 465

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV-K 560
            ACK+H    + E V+  + +   E  G Y+L++NI+++K++W E  K RK MK+  V K
Sbjct: 466 NACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEK 525

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           K PG S +E+    ++F   D+ H K  E+  +++ +    +  GY
Sbjct: 526 KIPGYSSIELDSVVHDFFAEDRLHSKWREVSTVIERLNTHLEVKGY 571


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 188/526 (35%), Positives = 299/526 (56%), Gaps = 7/526 (1%)

Query: 83  VYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           V  +N ++   + +   E A  L+  M   GL PN  +   +L  CW  ++L  G+ VHA
Sbjct: 224 VSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHA 283

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             M   L+ ++ V  +L+R+Y  CG I+   ++F         RD+VSWT +I+ Y +  
Sbjct: 284 QCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFD----NMKVRDVVSWTVMIEGYAENG 339

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
              +A   F  M +  ++PD +  + +++AC+   +L+   +IH  +    F    D+ +
Sbjct: 340 NIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFG--TDLLV 397

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
             AL+ MY KCG I  AR+VFD MP ++VVSW++MI      G   EA + F  M+   +
Sbjct: 398 STALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNI 457

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           +PD  T + +LN+C ++G L++G  ++T   K  + +   +GNAL+ M AK G +++A  
Sbjct: 458 EPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARY 517

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           +F +M  RDV ++ AMI G ++HG A +AL +F  M +    P+ VTFVGVLSACS AG 
Sbjct: 518 IFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGF 577

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           V+EG + F  +     + P  + YGCMVDL GRAG + EA  LIKSMP+ P + +W +LL
Sbjct: 578 VDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLL 637

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
            AC+IH  +++AE   E  +  +P     Y+ ++++Y++   W+   K+RK M+ R ++K
Sbjct: 638 VACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRK 697

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             GC+ +EV G+ + F   D+SHP   EIY  L  +M+  K  GYI
Sbjct: 698 EQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGYI 743



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 224/452 (49%), Gaps = 11/452 (2%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           S++N  V  +N +I   +    + EA AL+R+M+ +GL P+  T   VL AC     L  
Sbjct: 117 SVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNW 176

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G++VHA  +    +S+  +   L+ +Y   G +    ++F         RD+ ++  ++ 
Sbjct: 177 GKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLH----IRDVSTFNVMVG 232

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            Y K     +A   F+ M Q  L+P+ +  + +L  C     L+ G  +H    +    L
Sbjct: 233 GYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNA--GL 290

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             D+ +  +LI MY  CG+I  AR+VFD M V++VVSW  MI G    G  ++A  +F  
Sbjct: 291 VDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFAT 350

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           MQ  G++PD  T + ++N+CA    L   + +H+ +D     TD  +  ALV MYAKCG 
Sbjct: 351 MQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGA 410

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           I  A  VF +M  RDV S++AMI     +G   +A + F  M +  IEPD VT++ +L+A
Sbjct: 411 IKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNA 470

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           C H G ++ G + +    +  +L         ++ +  + G +  A  +  +M +  D  
Sbjct: 471 CGHLGALDVGMEIYTQAIKA-DLVSHVPLGNALIIMNAKHGSVERARYIFDTM-VRRDVI 528

Query: 496 VWGALLGACKIHAKVELAEIVMENLV--RFEP 525
            W A++G   +H     A  + + ++  RF P
Sbjct: 529 TWNAMIGGYSLHGNAREALYLFDRMLKERFRP 560



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 206/395 (52%), Gaps = 22/395 (5%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           ++ T   + + C + +   +G+QV  + ++     N+Y  NTL++LY++CG +    ++F
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
              ++    + +V+W  LI  Y ++ +  EA   F  M    L P  +  + VL ACS  
Sbjct: 116 DSVEN----KTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSP 171

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
             L+ G ++H  +    F    D  I  AL+ MY+K G++  AR+VFD + +++V ++N 
Sbjct: 172 AGLNWGKEVHAQVVTAGF--VSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNV 229

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           M+ G    G +++A ++F RMQ +GLKP+  + + +L+ C     L  GK VH       
Sbjct: 230 MVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAG 289

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           +  D  +  +L+ MY  CG I+ A  VF +MK RDV S+T MI G A +G    A  +F+
Sbjct: 290 LVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFA 349

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG-------CM 468
            M + GI+PD +T++ +++AC+ +          L+ +R  + Q     +G        +
Sbjct: 350 TMQEEGIQPDRITYMHIMNACAISA--------NLNHAREIHSQVDIAGFGTDLLVSTAL 401

Query: 469 VDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           V ++ + G I++A  +  +MP   D   W A++GA
Sbjct: 402 VHMYAKCGAIKDARQVFDAMPR-RDVVSWSAMIGA 435



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 181/380 (47%), Gaps = 50/380 (13%)

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D    V +   C++L D +LG ++  +I      L  +++  N LI +Y  CGN+  AR+
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQL--NIYELNTLIKLYSICGNVTEARQ 113

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           +FD +  K VV+WN++IAG    G  KEA  +FR+M   GL+P   T + VL++C++   
Sbjct: 114 IFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAG 173

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L  GK VH  +      +D  IG ALV MY K G +D A  VF  +  RDV ++  M+ G
Sbjct: 174 LNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGG 233

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA----------------CSHAGLVE- 443
            A  G   KA ++F  M QVG++P++++F+ +L                  C +AGLV+ 
Sbjct: 234 YAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDD 293

Query: 444 -----------------EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
                            EG +   D  +V ++   T     M++ +   G I +A  L  
Sbjct: 294 IRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWT----VMIEGYAENGNIEDAFGLFA 349

Query: 487 SMP---LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT----NIYS 539
           +M    + PD   +  ++ AC I A +  A  +   +   +  G G  +L++    ++Y+
Sbjct: 350 TMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQV---DIAGFGTDLLVSTALVHMYA 406

Query: 540 SKNRWKEALKLRKKMKERKV 559
                K+A ++   M  R V
Sbjct: 407 KCGAIKDARQVFDAMPRRDV 426


>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
          Length = 545

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 199/502 (39%), Positives = 286/502 (56%), Gaps = 39/502 (7%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNT-LMRLYAVCGLIKAVHKLFHFRQHPQAQRDL 187
           Q +++R  Q++HA ++   L  N    +  + R YA  G      +LF    HP    D+
Sbjct: 29  QCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFDEIPHP----DI 84

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
           +S+T+L+  ++K+D+  +AI  F     +  RPDG   V  LSA   LGD  +G  +H  
Sbjct: 85  ISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGL 144

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD------------------------ 283
           I      L  ++ + NAL+DMY +CG    AR VFD                        
Sbjct: 145 IF--RCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVD 202

Query: 284 -------EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
                  +MP+K+ VSW ++I G     Q  +AL++F +M   G +P+  T+V VL++CA
Sbjct: 203 SALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACA 262

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           +IG L+LG+ +H Y  K++  T+  + NAL+DMYAK G I  AF VF  ++ +D +++T 
Sbjct: 263 DIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTT 322

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           MI    + G   KA+++F +M + GI P+ VTFV VLSACSHAGL++EG + F  M  VY
Sbjct: 323 MISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVY 382

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
           ++ P+ EHYGCMVDL GR GL+ EA  LI  M + PD  +W +LL AC  H    LAEI 
Sbjct: 383 HIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIA 442

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
              +++ EP  DG Y+L+ N+Y+  NRWKEAL +RK+M  RK+ K PGCS +EV G  +E
Sbjct: 443 GMEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIEVDGVVHE 502

Query: 577 FRKGDKSHPKTLEIYKLLDEIM 598
           F   DK+H    EIY  L EIM
Sbjct: 503 FLVEDKTHDARREIYVTL-EIM 523



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 190/412 (46%), Gaps = 41/412 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQI---LYDKIISLSRGNEIENL--SLQNPQVYL 85
           L   K++ +L++ HA  +  G   +Q  I   ++       R  +   L   + +P +  
Sbjct: 27  LTQCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFDEIPHPDIIS 86

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +  ++   L   +  +AI+++   +  G  P+ +     L A       R+G  VH    
Sbjct: 87  FTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIF 146

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH---------------------------- 176
           +  L S + V N L+ +Y  CG  +    +F                             
Sbjct: 147 RCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALS 206

Query: 177 -FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
            F Q P   +  VSWT LI  +V+   P +A+  F  M     RP+ + +V VLSAC+ +
Sbjct: 207 FFYQMPM--KSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADI 264

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
           G L LG  IH Y + +  N + ++ + NAL+DMY K G+I SA  VF+E+ +K+  +W +
Sbjct: 265 GALDLGRAIHGYGSKS--NATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTT 322

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-N 354
           MI+  T +G  ++A+++F  M   G+ P+  T V VL++C++ G ++ G+ +   + +  
Sbjct: 323 MISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVY 382

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
           HI+        +VD+  + G +++A  +   M    D+  + +++     HG
Sbjct: 383 HIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHG 434


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 196/579 (33%), Positives = 312/579 (53%), Gaps = 25/579 (4%)

Query: 41  KQFHAFIIKTGSPQHQT-----QILYDKIISLSRG------NEIENLSLQNPQVYLYNFI 89
           +Q HA+  K G   +         LY K   +          E+EN+ L N  +  Y  +
Sbjct: 369 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYG-L 427

Query: 90  IQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           +  L N+       ++R+M I+ ++PN YT P +LK C +   L +G+Q+H+  +KT   
Sbjct: 428 LDDLRNS-----FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQ 482

Query: 150 SNVYVFNTLMRLYAVCG-LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            N YV + L+ +YA  G L  A   L  F     A +D+VSWTT+I  Y + ++  +A+ 
Sbjct: 483 LNAYVCSVLIDMYAKLGKLDTAWDILIRF-----AGKDVVSWTTMIAGYTQYNFDDKALT 537

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
           +F  M    +R D + L   +SAC+ L  L  G +IH     + F  S D+   NAL+ +
Sbjct: 538 TFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGF--SSDLPFQNALVTL 595

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y +CG I  +   F++    + ++WN++++G    G  +EAL +F RM   G+  ++FT 
Sbjct: 596 YSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTF 655

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
              + + +    ++ GK VH  + K   +++  + NAL+ MYAKCG I  A   F  +  
Sbjct: 656 GSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVST 715

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           ++  S+ A+I   + HG   +ALD F +M    + P+ VT VGVLSACSH GLV++G  +
Sbjct: 716 KNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAY 775

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M+  Y L P+ EHY C+VD+  RAGL+  A + I+ MP+ PDA VW  LL AC +H 
Sbjct: 776 FESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHK 835

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
            +E+ E    +L+  EPE    Y+L++N+Y+   +W      R+KMKE+ VKK PG S +
Sbjct: 836 NMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWI 895

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           EV    + F  GD++HP   EI++   ++  ++   GY+
Sbjct: 896 EVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYV 934



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 233/465 (50%), Gaps = 21/465 (4%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQ--TQILYDKIISLSRGNEIENLSL--QNPQ--VY 84
           L+++ S+ + ++ H+ I+K G   +   ++ L+D    L +G+      +  + P+  ++
Sbjct: 55  LKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFD--FYLFKGDLYGAFKVFDEMPERTIF 112

Query: 85  LYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKAC-WQSQSLRVGQQVHAY 142
            +N +I+ L++ N + E   L+  M+ + + PN  T   VL+AC   S +  V +Q+HA 
Sbjct: 113 TWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHAR 172

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +   L  +  V N L+ LY+  G +    ++F   +     +D  SW  +I    K + 
Sbjct: 173 ILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLR----LKDHSSWVAMISGLSKNEC 228

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             EAI  F DM    + P       VLSAC K+  L +G ++H  +    F  S D ++ 
Sbjct: 229 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF--SSDTYVC 286

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           NAL+ +Y   GN+ SA  +F  M  ++ V++N++I GL+  G  ++A+++F+RM   GL+
Sbjct: 287 NALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLE 346

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD  TL  ++ +C+  G L  G+ +H Y  K    ++  I  AL+++YAKC  I+ A   
Sbjct: 347 PDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDY 406

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F   +  +V  +  M+V   +      +  IF +M    I P++ T+  +L  C   G +
Sbjct: 407 FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 466

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGC--MVDLFGRAGLIREALDLI 485
           E G +     S++     Q   Y C  ++D++ + G +  A D++
Sbjct: 467 ELGEQIH---SQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 508



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 191/396 (48%), Gaps = 12/396 (3%)

Query: 111 KGLLPNTYTLPYVLKACWQSQ-SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK 169
           +G+ PN  TL ++L+ C ++  SL  G+++H+  +K  L SN  +   L   Y   G + 
Sbjct: 38  RGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLY 97

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
              K+F        +R + +W  +I+     +   E    F  M   N+ P+      VL
Sbjct: 98  GAFKVFD----EMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVL 153

Query: 230 SACSKLGDLSLGI--KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
            AC + G ++  +  +IH  I   +  L     + N LID+Y + G +  AR+VFD + +
Sbjct: 154 EAC-RGGSVAFDVVEQIHARIL--YQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRL 210

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K+  SW +MI+GL+      EA+ +F  M  LG+ P  +    VL++C  I  LE+G+ +
Sbjct: 211 KDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 270

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H  + K   ++D ++ NALV +Y   G +  A  +F +M  RD  +Y  +I GL+  G  
Sbjct: 271 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 330

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            KA+++F  M   G+EPD  T   ++ ACS  G +  G +     +         +  G 
Sbjct: 331 EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGA 389

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           +++L+ +   I  ALD       V +  +W  +L A
Sbjct: 390 LLNLYAKCADIETALDYFLETE-VENVVLWNVMLVA 424


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 203/608 (33%), Positives = 330/608 (54%), Gaps = 60/608 (9%)

Query: 2   ASPLTVASGSRYNDINTFQQLSLL---HQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQ 58
           ++P      S+   +N+ Q+  L    H    L++ K+   L Q H  +IKT   + +  
Sbjct: 6   STPYLSPVPSKTTALNSQQKQHLRKPDHAISLLQNCKNPKDLIQLHTLLIKTSLIKEKYA 65

Query: 59  I--------LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN-ANPLEAIALYREML 109
                     +D + SL+   ++ +        ++Y  +I+  +N  NP EA A Y  ML
Sbjct: 66  FGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRML 125

Query: 110 I--KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
              + + PN +T  YV  AC +   +  G+Q HA  +K      V+ +N+L+  Y   G 
Sbjct: 126 CDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGE 185

Query: 168 IK-AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
           +   V ++F   + P    D+VSW  LI  YVK     EA   F +M + ++    ++LV
Sbjct: 186 VGIVVRRVFDKIEGP----DVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLV 241

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
                                                     Y   G +  A  +FDEMP
Sbjct: 242 -----------------------------------------GYADAGFLSEASCLFDEMP 260

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
            +N+VSW+++I G    G + +AL++F+ MQ   +K D+  +  +L++CA +G L+ G+W
Sbjct: 261 KRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRW 320

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           +H Y+DK+ I  D  +  AL+DMY+KCGRID A+ VF+    + V+ +++MI GLA+H  
Sbjct: 321 LHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSF 380

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
             KA+++F++M + GIEP E+T++ +L+AC+H+GLV+ G + F  M      +P+ +HYG
Sbjct: 381 GEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYG 440

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           C+VDL GRAGL+ +A  ++++MP+  D  +W ALL ACK+H  VEL E V   L++ EP+
Sbjct: 441 CIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLHRNVELGEQVGRILIKMEPQ 500

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
            D  Y+L +N+Y++ NRW  + KLR++MK R ++K PGCS +E+ G  +EF   D SHP+
Sbjct: 501 NDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSSIELNGAVHEFVSRDHSHPQ 560

Query: 587 TLEIYKLL 594
           +  IY+LL
Sbjct: 561 SQVIYELL 568


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 183/496 (36%), Positives = 290/496 (58%), Gaps = 50/496 (10%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P ++T   ++KAC     L  G+ VH +  K    S+V+V   L+  Y   G I    ++
Sbjct: 8   PTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRV 67

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F       ++RD+ +WTT+I  +                                   ++
Sbjct: 68  FD----EMSERDVFAWTTMISVH-----------------------------------AR 88

Query: 235 LGDLSLGIKIHRYITDNHFNLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
            GD+S   ++        F+  P  +    NA+ID Y +  N+ SA  +F +MP ++++S
Sbjct: 89  TGDMSSARQL--------FDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIIS 140

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W +MIA  +   QF+EAL +F  MQ  G+ PD+ T+  ++++CA++G L+LGK +H Y  
Sbjct: 141 WTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAM 200

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           +   + D +IG+AL+DMYAKCG +D++  VF  ++ ++++ + ++I GLA+HG A +AL 
Sbjct: 201 EMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALA 260

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           +FS M +  I+P+ VTF+ VL AC+HAGLVEEG K FL MSR +++ P+ EHYGCMVDL 
Sbjct: 261 MFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLL 320

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           G+AGL+ +AL+L++SM + P++ +WGALLG CK+H  +++A++ +      EP   G Y 
Sbjct: 321 GKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYT 380

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKT-PGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           L+ N+Y+  NRW E   +R  MKE  V+KT PG S +E+  + ++F   DKSH  + EIY
Sbjct: 381 LLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKIHQFAASDKSHLASDEIY 440

Query: 592 KLLDEIMHQSKNHGYI 607
            LL E+  Q K  GY+
Sbjct: 441 TLLVELDGQLKLSGYV 456



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 120/226 (53%), Gaps = 11/226 (4%)

Query: 78  LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + N  +  +  +I C S N    EA+A++ EM   G+ P+  T+  ++ AC    +L +G
Sbjct: 133 MPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLG 192

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCG-LIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           +++H Y+M+     +VY+ + L+ +YA CG L K++   F  R     +++L  W ++I+
Sbjct: 193 KEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLR-----KKNLFCWNSIIE 247

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT-DNHFN 254
                 Y  EA+  F  M +  ++P+G+  + VL AC+  G +  G K  R+++    F+
Sbjct: 248 GLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRK--RFLSMSRDFS 305

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAG 299
           + P++  +  ++D+  K G +  A ++   M ++ N V W +++ G
Sbjct: 306 IPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGG 351



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 16/189 (8%)

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           + P  FT   ++ +C+ +  L  G+ VH ++ K   ++  F+  ALVD Y   G+I +A 
Sbjct: 6   VSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEAR 65

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  M  RDV+++T MI   A  G    A  +F EM       +  ++  ++   S   
Sbjct: 66  RVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPV----RNTASWNAMIDGYSRLR 121

Query: 441 LVEEGCKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMP---LVPDAF 495
            VE     F  M       P  +   +  M+  + +    REAL +   M    + PD  
Sbjct: 122 NVESAELLFSQM-------PNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEV 174

Query: 496 VWGALLGAC 504
               ++ AC
Sbjct: 175 TMATIISAC 183


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/499 (38%), Positives = 286/499 (57%), Gaps = 15/499 (3%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           PN+ T+  VL A  Q  SLR G+++H + ++   + +V V   ++ +Y  C  I    ++
Sbjct: 218 PNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRI 277

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI------LVIV 228
           F         ++ V+W+ ++ AYV  D+  EA+  F   CQ  +  D +I      L  V
Sbjct: 278 FDMMG---IVKNEVTWSAMVGAYVVCDFMREALELF---CQLLMLKDDVIVLSAVTLATV 331

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           +  C+ L DLS G  +H Y   + F L  D+ + N L+ MY KCG I  A + F+EM ++
Sbjct: 332 IRVCANLTDLSTGTCLHCYAIKSGFVL--DLMVGNTLLSMYAKCGIINGAMRFFNEMDLR 389

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           + VS+ ++I+G    G  +E L +F  MQ  G+ P+  TL  VL +CA++  L  G   H
Sbjct: 390 DAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSH 449

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
            Y        D  I NAL+DMYAKCG+ID A  VF  M  R + S+  MI+   IHG   
Sbjct: 450 CYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGL 509

Query: 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCM 468
           +AL +F  M   G++PD+VTF+ ++SACSH+GLV EG   F  M++ + + P+ EHY CM
Sbjct: 510 EALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACM 569

Query: 469 VDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
           VDL  RAGL +E    I+ MPL PD  VWGALL AC+++  VEL E V + + +  PE  
Sbjct: 570 VDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPEST 629

Query: 529 GAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD-KSHPKT 587
           G ++L++N+YS+  RW +A ++R   KE+  +K+PGCS +E+ G  + F  G  +SHP+ 
Sbjct: 630 GNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQL 689

Query: 588 LEIYKLLDEIMHQSKNHGY 606
            +I   LDE++ + K  GY
Sbjct: 690 TQISNKLDELLVEMKRLGY 708



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 163/527 (30%), Positives = 257/527 (48%), Gaps = 41/527 (7%)

Query: 21  QLSLLHQSPRLES---SKSVGQLKQFHAFIIKTGSPQHQTQI---------LYDKIISLS 68
           +LSL + +  LES   SKS+ + K  H  ++K     H+T +         L D  I+ S
Sbjct: 6   RLSLEYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACS 65

Query: 69  RGNEIENLSLQNPQ----VYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYV 123
                 ++  + P     V L+N +I+  +   P E AI LY +ML  G+ PN +T P+V
Sbjct: 66  ELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFV 125

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           LKAC   +    G+++H    +  L SNVYV   L+  YA CG +    ++F  + H   
Sbjct: 126 LKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFD-KMH--- 181

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           +RD+V+W ++I  +   +   + +       Q ++ P+   +V VL A +++  L  G +
Sbjct: 182 KRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKE 241

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMIAGLTH 302
           IH +     F    DV +   ++D+Y KC  I  AR++FD M  VKN V+W++M+     
Sbjct: 242 IHGFCVRRGF--VGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVV 299

Query: 303 RGQFKEALDIFRRMQGLGLKPD-----DFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
               +EAL++F   Q L LK D       TL  V+  CAN+  L  G  +H Y  K+   
Sbjct: 300 CDFMREALELF--CQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFV 357

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            D  +GN L+ MYAKCG I+ A   F  M  RD  S+TA+I G   +G + + L +F EM
Sbjct: 358 LDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEM 417

Query: 418 SQVGIEPDEVTFVGVLSACSH-AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
              GI P++ T   VL AC+H AGL    C H   +  +      T     ++D++ + G
Sbjct: 418 QLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAI--ICGFTADTMICNALIDMYAKCG 475

Query: 477 LI---REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
            I   R+  D +    +V     W  ++ A  IH     A ++ +N+
Sbjct: 476 KIDTARKVFDRMHKRGIVS----WNTMIIAYGIHGIGLEALLLFDNM 518


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 213/602 (35%), Positives = 316/602 (52%), Gaps = 24/602 (3%)

Query: 16  INTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI------LYDKIISLSR 69
           ++ F + S+L +  R        + ++ HA +I+TG   ++  I      +Y K  +++ 
Sbjct: 389 LSAFSEFSVLEEGRR--------KGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIAD 440

Query: 70  GNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ 129
              +  L ++   V   + I     N    +A   +  M   G +P+ +TL   L +C  
Sbjct: 441 ACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCAS 500

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
              + +G+Q+H   +K  L ++V V N L+ LYA  G      K+F        + D VS
Sbjct: 501 LGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSL----MPEYDQVS 556

Query: 190 WTTLIQAYVKMDYP-TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
           W ++I A    +   ++A+  F  M +       +  + +LSA S L    +  +IH  +
Sbjct: 557 WNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALV 616

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFK 307
               + LS D  I NAL+  Y KCG +    K+F  M   ++ VSWNSMI+G  H     
Sbjct: 617 L--KYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLH 674

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           +A+D+   M   G + D FT   +L++CA++  LE G  VH    +  + +D  +G+ALV
Sbjct: 675 KAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALV 734

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           DMY+KCGRID A   F  M  R+VYS+ +MI G A HG   KAL +F+ M   G  PD V
Sbjct: 735 DMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHV 794

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           TFVGVLSACSH G VEEG +HF  MS VY L P+ EH+ CMVDL GRAG + E  D I S
Sbjct: 795 TFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINS 854

Query: 488 MPLVPDAFVWGALLGA-CKIHAK-VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
           MP+ P+  +W  +LGA C+ + +  EL     E L+  EP+    Y+L+ N+Y+S  +W+
Sbjct: 855 MPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWE 914

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           +  K R  MKE  VKK  GCS V +    + F  GDK HP+   IY  L E+  + ++ G
Sbjct: 915 DVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAG 974

Query: 606 YI 607
           YI
Sbjct: 975 YI 976



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 200/406 (49%), Gaps = 26/406 (6%)

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            +++H  S+K   + N+++ NTL+ +Y   G + +  KLF       + R+LV+W  LI 
Sbjct: 90  ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFD----EMSNRNLVTWACLIS 145

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG--DLSLGIKIHRYITDNHF 253
            Y +   P EA   F DM +A   P+       L AC + G     LG++IH  I+   +
Sbjct: 146 GYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRY 205

Query: 254 NLSPDVFIHNALIDMYLKC-GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
               DV + N LI MY  C  +   AR VFD + ++N +SWNS+I+  + RG    A D+
Sbjct: 206 G--SDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDL 263

Query: 313 FRRMQ----GLGLKPDDFTLVCVLNS-CANIGW-LELGKWVHTYLDKNHINTDGFIGNAL 366
           F  MQ    G   KP+++T   ++ + C+++ + L + + +   ++K+    D ++ +AL
Sbjct: 264 FSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSAL 323

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ-VGIEPD 425
           V  +A+ G  D A  +F  M  R+V S   ++VGL    +   A  +F EM   VGI  D
Sbjct: 324 VSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD 383

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMS----RVYNLQPQTEHYGCMVDLFGRAGLIREA 481
             ++V +LSA S   ++EEG +   ++     R      +      +V+++ ++G I +A
Sbjct: 384 --SYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADA 441

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
             + + M +  D+  W +L+       + E +E   E+  R    G
Sbjct: 442 CSVFELM-VEKDSVSWNSLISGLD---QNECSEDAAESFHRMRRTG 483



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 196/422 (46%), Gaps = 21/422 (4%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQS--QSLRVGQQVHAYSMKTALLSNV 152
           N  P EA A +R+M+  G +PN Y     L+AC +S     ++G Q+H    KT   S+V
Sbjct: 150 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 209

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V N L+ +Y  C L  A      F       R+ +SW ++I  Y +      A   F  
Sbjct: 210 VVCNVLISMYGSC-LDSANDARSVF--DGIGIRNSISWNSIISVYSRRGDAVSAYDLFSS 266

Query: 213 MCQANL----RPDGMIL-VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
           M +  L    +P+      ++ +ACS + D  L +               D+++ +AL+ 
Sbjct: 267 MQKEGLGFSFKPNEYTFGSLITTACSSV-DFGLCVLEQMLARVEKSGFLQDLYVSSALVS 325

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDF 326
            + + G    A+ +F++M V+NVVS N ++ GL  + Q + A  +F  M+ L G+  D +
Sbjct: 326 GFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSY 385

Query: 327 TLVCVLNSCANIGWLE----LGKWVHTYLDKNHINTDGF-IGNALVDMYAKCGRIDQAFG 381
             V +L++ +    LE     G+ VH ++ +  +N +   IGN LV+MYAK G I  A  
Sbjct: 386 --VVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACS 443

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF  M  +D  S+ ++I GL  +  +  A + F  M + G  P   T +  LS+C+  G 
Sbjct: 444 VFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGW 503

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           +  G +   D  ++  L         ++ L+   G   E L +   MP   D   W +++
Sbjct: 504 IMLGEQIHCDGLKL-GLDTDVSVSNALLALYAETGCFTECLKVFSLMPEY-DQVSWNSVI 561

Query: 502 GA 503
           GA
Sbjct: 562 GA 563



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 160/344 (46%), Gaps = 42/344 (12%)

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           ++F+ N LI++Y++ G++ SA+K+FDEM  +N+V+W  +I+G T  G+  EA   FR M 
Sbjct: 105 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 164

Query: 318 GLGLKPDDFTLVCVLNSCANIG--WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC-G 374
             G  P+ +     L +C   G    +LG  +H  + K    +D  + N L+ MY  C  
Sbjct: 165 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 224

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI----EPDEVTFV 430
             + A  VF  +  R+  S+ ++I   +  G A  A D+FS M + G+    +P+E TF 
Sbjct: 225 SANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFG 284

Query: 431 GVL-SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL---------FGRAGLIRE 480
            ++ +ACS              +  +  +  + E  G + DL         F R GL  +
Sbjct: 285 SLITTACSSVD---------FGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDD 335

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV--MENLVRFEPEGDGAYILMTNIY 538
           A ++ + M +     + G ++G  K       A++   M++LV    +   +Y+++ + +
Sbjct: 336 AKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD---SYVVLLSAF 392

Query: 539 SS---------KNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
           S          K R   A  +R  + + KV    G  LV +Y +
Sbjct: 393 SEFSVLEEGRRKGREVHAHVIRTGLNDNKV--AIGNGLVNMYAK 434


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 225/639 (35%), Positives = 335/639 (52%), Gaps = 75/639 (11%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEIE-NL 76
           SLL+    L   KS+ Q KQ HA  I  G   H   +      Y     L+  + I  N 
Sbjct: 46  SLLYSCTNL---KSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNS 102

Query: 77  SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
            + NP    +N +I   ++N    EA++ YREM+ KG+ P+ +T P VLKAC +   L  
Sbjct: 103 DIVNP--LPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDF 160

Query: 136 GQQVH-----AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
           G++VH     AY  +     N+YV N+L+ +Y   G + A  +LF+  Q P+  RD VSW
Sbjct: 161 GREVHESINAAYGHRW----NLYVHNSLVSMYGKFGELDAARRLFN--QMPE--RDAVSW 212

Query: 191 TTLIQAYVKMDYPTEAILSFFDM------------------------------------- 213
             +I  Y       EA   F +M                                     
Sbjct: 213 NGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRR 272

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
           C  +L P  MI  I L ACS +G + LG  IH     + F+   +V   NALI MY +C 
Sbjct: 273 CDIDLDPVAMI--IGLGACSHIGAIKLGTVIHASAIRSCFDGFDNV--RNALITMYSRCK 328

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
           ++  A  +F  +  K++ +WNSM++G TH  + +EA  +FR M   G++P+  T+  +L 
Sbjct: 329 DLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILP 388

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGF-----IGNALVDMYAKCGRIDQAFGVFRSMKC 388
            CA +  L+ GK  H Y+    +  +GF     + N+LV+MYA+ G++  A  VF S++ 
Sbjct: 389 HCARVANLQQGKEFHCYI----MRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRR 444

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           RD  +YT++I G  I G+   AL +F EM +  I+PD+VT V VLSACSH+GLV EG   
Sbjct: 445 RDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVL 504

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  MS +Y + P  EH+ CMVDLFGRAGL+ +A  +I SMP  P   +W  L+GAC+IH 
Sbjct: 505 FEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLVGACRIHG 564

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
             E+ E   E L+  +PE  G Y+L+ N++++  RW +  ++R  M++  V+K PGC+ V
Sbjct: 565 NTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKLAEVRTYMRDLGVRKAPGCTWV 624

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +V   F  F  GD S   + ++Y+LL+ +    K+ GY+
Sbjct: 625 DVGSGFSPFVVGDTSKHNSNDLYELLEGLTDLMKDAGYV 663



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 107/451 (23%), Positives = 217/451 (48%), Gaps = 53/451 (11%)

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
           +++  +L +C   +SL  G+Q+HA+++     +++ +   L+  Y+   L+   H +   
Sbjct: 42  HSISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTI--- 98

Query: 178 RQHPQAQRDLVS---WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
                   D+V+   W  LI +YV      EA+ ++ +M    +RPD      VL AC +
Sbjct: 99  ----TVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGE 154

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
             DL  G ++H  I +  +    ++++HN+L+ MY K G + +AR++F++MP ++ VSWN
Sbjct: 155 KLDLDFGREVHESI-NAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWN 213

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLG---------------------------------- 320
            +I+    RG +KEA ++F  M+  G                                  
Sbjct: 214 GIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRC 273

Query: 321 -LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF--IGNALVDMYAKCGRID 377
            +  D   ++  L +C++IG ++LG  +H    ++    DGF  + NAL+ MY++C  + 
Sbjct: 274 DIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCF--DGFDNVRNALITMYSRCKDLR 331

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A  +F+S+K + + ++ +M+ G     ++ +A  +F EM   GIEP+ VT   +L  C+
Sbjct: 332 HADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCA 391

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
               +++G +    + R    +     +  +V+++ R+G +  A  +  S+    D   +
Sbjct: 392 RVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRR-RDKVTY 450

Query: 498 GALLGACKIHAKVELAEIVMENLV--RFEPE 526
            +L+    I  + + A  + + ++  R +P+
Sbjct: 451 TSLIAGYGIQGEGKTALKLFDEMIKHRIKPD 481


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 196/579 (33%), Positives = 312/579 (53%), Gaps = 25/579 (4%)

Query: 41  KQFHAFIIKTGSPQHQT-----QILYDKIISLSRG------NEIENLSLQNPQVYLYNFI 89
           +Q HA+  K G   +         LY K   +          E+EN+ L N  +  Y  +
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYG-L 467

Query: 90  IQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           +  L N+       ++R+M I+ ++PN YT P +LK C +   L +G+Q+H+  +KT   
Sbjct: 468 LDDLRNS-----FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQ 522

Query: 150 SNVYVFNTLMRLYAVCG-LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            N YV + L+ +YA  G L  A   L  F     A +D+VSWTT+I  Y + ++  +A+ 
Sbjct: 523 LNAYVCSVLIDMYAKLGKLDTAWDILIRF-----AGKDVVSWTTMIAGYTQYNFDDKALT 577

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
           +F  M    +R D + L   +SAC+ L  L  G +IH     + F  S D+   NAL+ +
Sbjct: 578 TFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGF--SSDLPFQNALVTL 635

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y +CG I  +   F++    + ++WN++++G    G  +EAL +F RM   G+  ++FT 
Sbjct: 636 YSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTF 695

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
              + + +    ++ GK VH  + K   +++  + NAL+ MYAKCG I  A   F  +  
Sbjct: 696 GSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVST 755

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           ++  S+ A+I   + HG   +ALD F +M    + P+ VT VGVLSACSH GLV++G  +
Sbjct: 756 KNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAY 815

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M+  Y L P+ EHY C+VD+  RAGL+  A + I+ MP+ PDA VW  LL AC +H 
Sbjct: 816 FESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHK 875

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
            +E+ E    +L+  EPE    Y+L++N+Y+   +W      R+KMKE+ VKK PG S +
Sbjct: 876 NMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWI 935

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           EV    + F  GD++HP   EI++   ++  ++   GY+
Sbjct: 936 EVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYV 974



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 233/465 (50%), Gaps = 21/465 (4%)

Query: 31  LESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENLSL--QNPQ--VY 84
           L+++ S+ + ++ H+ I+K G  S    ++ L+D    L +G+      +  + P+  ++
Sbjct: 95  LKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFD--FYLFKGDLYGAFKVFDEMPERTIF 152

Query: 85  LYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKAC-WQSQSLRVGQQVHAY 142
            +N +I+ L++ N + E   L+  M+ + + PN  T   VL+AC   S +  V +Q+HA 
Sbjct: 153 TWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHAR 212

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +   L  +  V N L+ LY+  G +    ++F   +     +D  SW  +I    K + 
Sbjct: 213 ILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLR----LKDHSSWVAMISGLSKNEC 268

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             EAI  F DM    + P       VLSAC K+  L +G ++H  +    F  S D ++ 
Sbjct: 269 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF--SSDTYVC 326

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           NAL+ +Y   GN+ SA  +F  M  ++ V++N++I GL+  G  ++A+++F+RM   GL+
Sbjct: 327 NALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLE 386

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD  TL  ++ +C+  G L  G+ +H Y  K    ++  I  AL+++YAKC  I+ A   
Sbjct: 387 PDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDY 446

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F   +  +V  +  M+V   +      +  IF +M    I P++ T+  +L  C   G +
Sbjct: 447 FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 506

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGC--MVDLFGRAGLIREALDLI 485
           E G +     S++     Q   Y C  ++D++ + G +  A D++
Sbjct: 507 ELGEQIH---SQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 191/396 (48%), Gaps = 12/396 (3%)

Query: 111 KGLLPNTYTLPYVLKACWQSQ-SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK 169
           +G+ PN  TL ++L+ C ++  SL  G+++H+  +K  L SN  +   L   Y   G + 
Sbjct: 78  RGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLY 137

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
              K+F        +R + +W  +I+     +   E    F  M   N+ P+      VL
Sbjct: 138 GAFKVFD----EMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVL 193

Query: 230 SACSKLGDLSLGI--KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
            AC + G ++  +  +IH  I   +  L     + N LID+Y + G +  AR+VFD + +
Sbjct: 194 EAC-RGGSVAFDVVEQIHARIL--YQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRL 250

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K+  SW +MI+GL+      EA+ +F  M  LG+ P  +    VL++C  I  LE+G+ +
Sbjct: 251 KDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQL 310

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H  + K   ++D ++ NALV +Y   G +  A  +F +M  RD  +Y  +I GL+  G  
Sbjct: 311 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 370

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            KA+++F  M   G+EPD  T   ++ ACS  G +  G +     +         +  G 
Sbjct: 371 EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGA 429

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           +++L+ +   I  ALD       V +  +W  +L A
Sbjct: 430 LLNLYAKCADIETALDYFLETE-VENVVLWNVMLVA 464


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 181/477 (37%), Positives = 290/477 (60%), Gaps = 11/477 (2%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVC----GLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           +Q+HA+S++  +  +       +  Y V       +   HK+F   + P    ++  W T
Sbjct: 34  RQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPI---NVFIWNT 90

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANL-RPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
           LI+ Y ++     A   + +M  + L  PD      ++ A + + D+ LG  IH  +  +
Sbjct: 91  LIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS 150

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
            F     +++ N+L+ +Y  CG++ SA KVFD+MP K++V+WNS+I G    G+ +EAL 
Sbjct: 151 GFG--SLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           ++  M   G+KPD FT+V +L++CA IG L LGK VH Y+ K  +  +    N L+D+YA
Sbjct: 209 LYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFV 430
           +CGR+++A  +F  M  ++  S+T++IVGLA++G   +A+++F  M S  G+ P E+TFV
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
           G+L ACSH G+V+EG ++F  M   Y ++P+ EH+GCMVDL  RAG +++A + IKSMP+
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPM 388

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            P+  +W  LLGAC +H   +LAE     +++ EP   G Y+L++N+Y+S+ RW +  K+
Sbjct: 389 QPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKI 448

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           RK+M    VKK PG SLVEV    +EF  GDKSHP++  IY  L E+  + ++ GY+
Sbjct: 449 RKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYV 505



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 229/404 (56%), Gaps = 22/404 (5%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQI---LYDKIISL------SRGNEIENLSLQNPQVYLY 86
           S+ +L+Q HAF I+ G      ++   L   ++SL      S  +++ +   +   V+++
Sbjct: 29  SITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIW 88

Query: 87  NFIIQCLSN-ANPLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           N +I+  +   N + A +LYREM + GL+ P+T+T P+++KA      +R+G+ +H+  +
Sbjct: 89  NTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVI 148

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           ++   S +YV N+L+ LYA CG + + +K+F        ++DLV+W ++I  + +   P 
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVF----DKMPEKDLVAWNSVINGFAENGKPE 204

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EA+  + +M    ++PDG  +V +LSAC+K+G L+LG ++H Y+      L+ ++   N 
Sbjct: 205 EALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK--VGLTRNLHSSNV 262

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKP 323
           L+D+Y +CG +  A+ +FDEM  KN VSW S+I GL   G  KEA+++F+ M+   GL P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322

Query: 324 DDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            + T V +L +C++ G ++ G ++     ++  I         +VD+ A+ G++ +A+  
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382

Query: 383 FRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
            +SM  + +V  +  ++    +HG +   L  F+ +  + +EP+
Sbjct: 383 IKSMPMQPNVVIWRTLLGACTVHGDS--DLAEFARIQILQLEPN 424


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 317/569 (55%), Gaps = 64/569 (11%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           AI ++ +M+ + + P+ +T+  VL +C  +Q+L +G+++H++ +K  L S V V  +L+ 
Sbjct: 126 AIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLN 185

Query: 161 LYAVCGLIKAVHKLF-----------------------------HFRQHPQAQRDLVSWT 191
           +YA CG       +F                              F + P   RD+VSW 
Sbjct: 186 MYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPD--RDIVSWN 243

Query: 192 TLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI-- 248
           ++I  Y +  Y  EA+  F  M  + +L+PD   L  +LSAC+ L  L++G +IH YI  
Sbjct: 244 SMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILR 303

Query: 249 -----------------------------TDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
                                         +++   + ++    +L+D Y K GN+  AR
Sbjct: 304 AETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAR 363

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++F+++  ++VV+W +MI G    G + +AL++FR M   G +P+ +TL  +L+  +++ 
Sbjct: 364 EIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLT 423

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR-SMKCRDVYSYTAMI 398
            LE GK +H    K   ++   + NAL+ MYAK G I+ A  VF      +++ S+T+MI
Sbjct: 424 ILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMI 483

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
           + LA HG   +A+++F  M  VG++PD +T+VGVLSAC+H GLVE+G K++  M+ V+ +
Sbjct: 484 MALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEI 543

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +P   HY CM+DL+GRAGL++EA   I+SMP+ PD   WG+LL +CKIH   +LA++  E
Sbjct: 544 EPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAE 603

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            L+  +P   GAY+ + N+YS+  +W+ A + RK MK+R V+K  G S + +  E + F 
Sbjct: 604 RLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFG 663

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             D  HP+  EIYKL+ EI  + K  G+I
Sbjct: 664 VEDVIHPQKDEIYKLMAEIWEEIKKMGFI 692



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 218/507 (42%), Gaps = 109/507 (21%)

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           +P    +++ +++ KGL    Y +  ++    ++ SLR    V         L + + +N
Sbjct: 25  DPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHV----FDEMPLKSTFSWN 80

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
           TL+  YA  G  +   +L +  + P    D VSWT +I  Y +      AI  F  M   
Sbjct: 81  TLISGYAKQGNFEVSRRLLY--EMPDC--DPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            + P    +  VLS+C+    L +G KIH ++      L   V +  +L++MY KCG+  
Sbjct: 137 RVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVK--LGLGSCVPVATSLLNMYAKCGDPV 194

Query: 277 SARKVFDEMPVKN-------------------------------VVSWNSMIAGLTHRGQ 305
            A+ VFD M VKN                               +VSWNSMI+G + +G 
Sbjct: 195 IAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254

Query: 306 FKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
             EAL IF +M     LKPD+FTL  +L++CAN+  L +GK +H Y+ +    T G +GN
Sbjct: 255 NLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGN 314

Query: 365 ALVDMYAKCGRID---------------------------------QAFGVFRSMKCRDV 391
           AL+ MYAK G ++                                  A  +F  ++ RDV
Sbjct: 315 ALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDV 374

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------ 445
            ++TAMIVG   +G    AL++F  M   G EP+  T   +LS  S   ++E G      
Sbjct: 375 VAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHAS 434

Query: 446 ------------CKHFLDM----------SRVYNL---QPQTEHYGCMVDLFGRAGLIRE 480
                           + M           RV++L   + +   +  M+    + GL +E
Sbjct: 435 AIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKE 494

Query: 481 ALDLIKSMPLV---PDAFVWGALLGAC 504
           A++L + M  V   PD   +  +L AC
Sbjct: 495 AINLFERMLSVGMKPDHITYVGVLSAC 521



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 5/239 (2%)

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTL 120
           Y K+ ++    EI N       V     I+  + N    +A+ L+R M+ +G  PN+YTL
Sbjct: 353 YTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTL 412

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
             +L        L  G+Q+HA ++K    S   V N L+ +YA  G I    ++F     
Sbjct: 413 AAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDL--- 469

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
           P  ++++VSWT++I A  +     EAI  F  M    ++PD +  V VLSAC+ +G +  
Sbjct: 470 PNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQ 529

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIA 298
           G K +  +T+ H  + P +  +  +ID+Y + G +  A    + MP++ + ++W S++A
Sbjct: 530 GRKYYNMMTEVH-EIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLA 587


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 202/637 (31%), Positives = 328/637 (51%), Gaps = 75/637 (11%)

Query: 42  QFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQCLSNA 96
           Q HA I+K+G+ Q+   I    I S S  N   +      S+ +P +Y ++ +I  L+ A
Sbjct: 36  QAHARILKSGA-QNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94

Query: 97  NPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
               ++I ++  M   GL+P+++ LP + K C +  + +VG+Q+H  S  + L  + +V 
Sbjct: 95  KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQA-------------------------------Q 184
            ++  +Y  CG +    K+F                                       +
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI 244
            ++VSW  ++  + +  Y  EA++ F  +      PD + +  VL +      L++G  I
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 245 HRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK---------------- 288
           H Y+      L  D  + +A+IDMY K G++     +F++  +                 
Sbjct: 275 HGYVIKQ--GLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG 332

Query: 289 -------------------NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
                              NVVSW S+IAG    G+  EAL++FR MQ  G+KP+  T+ 
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            +L +C NI  L  G+  H +  + H+  +  +G+AL+DMYAKCGRI+ +  VF  M  +
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           ++  + +++ G ++HGKA + + IF  + +  ++PD ++F  +LSAC   GL +EG K+F
Sbjct: 453 NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
             MS  Y ++P+ EHY CMV+L GRAG ++EA DLIK MP  PD+ VWGALL +C++   
Sbjct: 513 KMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNN 572

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           V+LAEI  E L   EPE  G Y+L++NIY++K  W E   +R KM+   +KK PGCS ++
Sbjct: 573 VDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQ 632

Query: 570 VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           V    Y    GDKSHP+  +I + +DEI  + +  G+
Sbjct: 633 VKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGH 669


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 206/584 (35%), Positives = 325/584 (55%), Gaps = 16/584 (2%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII-SLSRGNEIENLSL---QNPQ--VY 84
           L +SK    + + HA +I TG   H       K+I S +R   IE+      ++PQ  V 
Sbjct: 14  LITSKDEPTIAKIHALMILTGIFGHGNS--NAKLIQSYARLGHIESARQVFDKSPQCGVD 71

Query: 85  LYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            +N +I   S    + EA++LY  M  +G+ P++ T   VLKAC +S  LR G++    +
Sbjct: 72  AWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQA 131

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +      +V+V   ++ LYA CG +    ++F        +RDLV WTT+I    +    
Sbjct: 132 VDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFD----KMGRRDLVCWTTMITGLAQNGQA 187

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EA+  +  M +  +  DG++++ ++ AC+ LG   +G+ IH Y+     ++  DV +  
Sbjct: 188 REAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRK--DIIMDVIVQT 245

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           +L+DMY K G++  A  VF  M  KNV+SW+++I+G    G    AL +   MQ  G KP
Sbjct: 246 SLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKP 305

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  +LV VL +C+ +G+L+LGK VH Y+ +  ++ D     A++DMY+KCG +  A  VF
Sbjct: 306 DSVSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVF 364

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             +  RD  S+ A+I    IHG   +AL +F +M +  ++PD  TF  +LSA SH+GLVE
Sbjct: 365 DQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVE 424

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           +G   F  M   Y +QP  +HY CMVDL  RAG + EA +LI+SM   P   +W ALL  
Sbjct: 425 KGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSG 484

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C  H K  + E+  + ++   P+  G Y L++N +++  RW E  ++RK MK+  +KK P
Sbjct: 485 CLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVP 544

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           G S++EV G+ + F   DKSH +  EI ++L ++ ++ K  GY+
Sbjct: 545 GYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYV 588


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 193/538 (35%), Positives = 310/538 (57%), Gaps = 10/538 (1%)

Query: 60  LYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNT 117
           +Y K+  + +G  + + ++ +N  V  +  II  L +A   +EA+  + EM I  +  ++
Sbjct: 201 MYMKVGKIEQGCRVFKKMTKRN--VVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDS 258

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
           +T    LKA   S  L  G+ +H  ++K     + +V NTL  +Y  CG    V +LF  
Sbjct: 259 HTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEK 318

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
            + P    D+VSWTTLI  YV+      A+ +F  M ++N+ P+      V+SAC+ L  
Sbjct: 319 MKMP----DVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAI 374

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
              G +IH ++      L   + + N+++ +Y K G + SA  VF  +  K+++SW+++I
Sbjct: 375 AKWGEQIHGHVL--RLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTII 432

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
           A  +  G  KEA D    M+  G KP++F L  VL+ C ++  LE GK VH ++    I+
Sbjct: 433 AVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGID 492

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            +  + +AL+ MY+KCG +++A  +F  MK  ++ S+TAMI G A HG + +A+++F ++
Sbjct: 493 HEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKI 552

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
           S VG++PD VTF+GVL+ACSHAG+V+ G  +F+ M+  Y + P  EHYGC++DL  RAG 
Sbjct: 553 SSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGR 612

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
           + EA  +I+SMP   D  VW  LL +C++H  V+      E L+R +P   G +I + NI
Sbjct: 613 LSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANI 672

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           Y++K RWKEA  +RK MK + V K  G S V V  +   F  GD++HP++  I  +L+
Sbjct: 673 YAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDKLNAFVAGDQAHPQSEHITTVLE 730



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 235/496 (47%), Gaps = 44/496 (8%)

Query: 96  ANPLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           ++  EA+ L+  M ++ GL  + + +   LKAC    ++  G+ +H +S+K+ L+++V+V
Sbjct: 135 SDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFV 194

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +Y   G I+   ++F        +R++VSWT +I   V   Y  EA+L F +M 
Sbjct: 195 SSALIDMYMKVGKIEQGCRVF----KKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMW 250

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
            + +  D     I L A +    L  G  IH       F+ S   F+ N L  MY KCG 
Sbjct: 251 ISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESS--FVINTLATMYNKCGK 308

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
                ++F++M + +VVSW ++I     +G+ + A++ F+RM+   + P+ +T   V+++
Sbjct: 309 ADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISA 368

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CAN+   + G+ +H ++ +  +     + N++V +Y+K G +  A  VF  +  +D+ S+
Sbjct: 369 CANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISW 428

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG--------- 445
           + +I   +  G A +A D  S M + G +P+E     VLS C    L+E+G         
Sbjct: 429 STIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLC 488

Query: 446 -------------------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDL 484
                              C    + S+++N         +  M++ +   G  +EA++L
Sbjct: 489 IGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINL 548

Query: 485 ---IKSMPLVPDAFVWGALLGACKIHAKVELA---EIVMENLVRFEPEGDGAYILMTNIY 538
              I S+ L PD   +  +L AC     V+L     ++M N  +  P  +  Y  + ++ 
Sbjct: 549 FEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKE-HYGCIIDLL 607

Query: 539 SSKNRWKEALKLRKKM 554
               R  EA  + + M
Sbjct: 608 CRAGRLSEAEHMIRSM 623



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 180/375 (48%), Gaps = 25/375 (6%)

Query: 115 PNTYTLPYVLKAC----WQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170
           P TY+ P     C     Q++  ++ Q  +AYS+      N+   N+ ++     G +  
Sbjct: 56  PLTYSSPGTATECRELIQQAKQEQLAQ--NAYSVH-----NMLELNSELKQLVKQGQLCK 108

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVL 229
              +F    H    RD +SWTTLI  YV      EA++ F +M  Q  L+ D  ++ + L
Sbjct: 109 SRYMFDKMTH----RDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVAL 164

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
            AC    ++  G  +H +   +   L   VF+ +ALIDMY+K G I    +VF +M  +N
Sbjct: 165 KACGLGVNICFGELLHGFSVKS--GLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRN 222

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           VVSW ++IAGL H G   EAL  F  M    +  D  T    L + A+   L  GK +HT
Sbjct: 223 VVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHT 282

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
              K   +   F+ N L  MY KCG+ D    +F  MK  DV S+T +I      G+   
Sbjct: 283 QTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEH 342

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYG 466
           A++ F  M +  + P++ TF  V+SAC++  + + G +   H L +  V  L        
Sbjct: 343 AVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANS--- 399

Query: 467 CMVDLFGRAGLIREA 481
            +V L+ ++GL++ A
Sbjct: 400 -IVTLYSKSGLLKSA 413


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 202/637 (31%), Positives = 328/637 (51%), Gaps = 75/637 (11%)

Query: 42  QFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQCLSNA 96
           Q HA I+K+G+ Q+   I    I S S  N   +      S+ +P +Y ++ +I  L+ A
Sbjct: 36  QAHARILKSGA-QNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94

Query: 97  NPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
               ++I ++  M   GL+P+++ LP + K C +  + +VG+Q+H  S  + L  + +V 
Sbjct: 95  KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQA-------------------------------Q 184
            ++  +Y  CG +    K+F                                       +
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI 244
            ++VSW  ++  + +  Y  EA++ F  +      PD + +  VL +      L++G  I
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 245 HRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK---------------- 288
           H Y+      L  D  + +A+IDMY K G++     +F++  +                 
Sbjct: 275 HGYVIKQ--GLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG 332

Query: 289 -------------------NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
                              NVVSW S+IAG    G+  EAL++FR MQ  G+KP+  T+ 
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            +L +C NI  L  G+  H +  + H+  +  +G+AL+DMYAKCGRI+ +  VF  M  +
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           ++  + +++ G ++HGKA + + IF  + +  ++PD ++F  +LSAC   GL +EG K+F
Sbjct: 453 NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
             MS  Y ++P+ EHY CMV+L GRAG ++EA DLIK MP  PD+ VWGALL +C++   
Sbjct: 513 KMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNN 572

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           V+LAEI  E L   EPE  G Y+L++NIY++K  W E   +R KM+   +KK PGCS ++
Sbjct: 573 VDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQ 632

Query: 570 VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           V    Y    GDKSHP+  +I + +DEI  + +  G+
Sbjct: 633 VKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGH 669


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 194/608 (31%), Positives = 331/608 (54%), Gaps = 25/608 (4%)

Query: 16  INTFQQLSLLHQSPR-------LESSKSVGQL---KQFHAFIIKTGSPQHQTQILYDKII 65
           +  F ++ L   SP        L +  +VG L   KQ H++++K G       I+   ++
Sbjct: 229 LGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAG--MSLDYIMEGSLL 286

Query: 66  SL-SRGNEIENL-----SLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTY 118
            L  +  +IE       S     V L+N ++      + L ++  ++  ML  G+ PN +
Sbjct: 287 DLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKF 346

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T P +L+ C  +  + +G+Q+H+ ++K    S++YV   L+ +Y+  G +    ++    
Sbjct: 347 TYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMI 406

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
           +    ++D+VSWT++I  YV+ ++  EA+ +F +M    + PD + L   +SAC+ +  +
Sbjct: 407 E----EKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAV 462

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G +IH  +  + +  S DV I N L+ +Y +CG    A   F+ +  K  ++WN +I+
Sbjct: 463 HQGSQIHARVYVSGY--SADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLIS 520

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G    G ++EAL +F +M   G K + FT V  +++ AN+  ++ GK +H  + K    +
Sbjct: 521 GFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTS 580

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           +  I NAL+ +Y KCG I+ A   F  M  R+  S+  +I   + HG+  +ALD+F +M 
Sbjct: 581 ETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMK 640

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
           Q G++P +VTFVGVL+ACSH GLVEEG  +F  MS  + + P+ +HY C+VD+ GRAG +
Sbjct: 641 QQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQL 700

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
             A   ++ MP+  D+ VW  LL ACK+H  +E+ E   ++L+  EP    +Y+L++N Y
Sbjct: 701 DRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAY 760

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           +   +W    ++RK MK+R V+K PG S +EV    + F  GD+ HP   +IY  L  + 
Sbjct: 761 AVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLN 820

Query: 599 HQSKNHGY 606
            +    GY
Sbjct: 821 DRLYKIGY 828



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 146/532 (27%), Positives = 257/532 (48%), Gaps = 46/532 (8%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ LYREM   G++P  Y L  +L AC +++  ++G+ +H    K    S  +V N L+
Sbjct: 126 EAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALI 185

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY  C   +   ++F    +     D V++ TLI  + +  +   A+  F +M  + L 
Sbjct: 186 SLYLRCRSFRLADRVFCDMLYC----DSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLS 241

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + +  +L+ACS +GDL  G ++H Y+      +S D  +  +L+D+Y+K G+I  A 
Sbjct: 242 PDSVTIASLLAACSAVGDLRKGKQLHSYLLKA--GMSLDYIMEGSLLDLYVKSGDIEEAL 299

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++FD     NVV WN M+          ++ DIF RM   G++P+ FT  C+L +C + G
Sbjct: 300 QIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTG 359

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            + LG+ +H+   KN   +D ++   L+DMY+K G +D+A  +   ++ +DV S+T+MI 
Sbjct: 360 EIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIA 419

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY--N 457
           G   H    +AL+ F EM   GI PD +     +SAC+    V +G +     +RVY   
Sbjct: 420 GYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIH---ARVYVSG 476

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
                  +  +V L+ R G+ +EA    +++    +   W  L+      A+  L E  +
Sbjct: 477 YSADVSIWNGLVYLYARCGISKEAFSSFEAIEH-KEGITWNGLISG---FAQSGLYEEAL 532

Query: 518 ENLVRFEPEGD--GAYILMTNIYSSKNRWKEALKLRKKMKERKVK------KTPGCSLVE 569
           +  ++ +  G     +  +++I +S N     +K  K++  R +K           +L+ 
Sbjct: 533 KVFMKMDQAGAKYNVFTFVSSISASANL--ADIKQGKQIHARVIKTGYTSETEISNALIS 590

Query: 570 VYG----------EFYEFRKGDK-----------SHPKTLEIYKLLDEIMHQ 600
           +YG          +F+E  K ++            H + LE   L D++  Q
Sbjct: 591 LYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQ 642



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 204/406 (50%), Gaps = 17/406 (4%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQS-QSLRVGQQVHAYSMKTALLSN 151
           L+  +P + + L+     + ++         L+AC  S +   +  ++HA ++   L   
Sbjct: 17  LAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPLVPEIHAKAIICGLSGY 76

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
             + N L+ LYA  G ++   ++F       + RD VSW  ++  Y +     EA+  + 
Sbjct: 77  RIIGNLLIDLYAKKGFVRRARRVFE----ELSVRDNVSWVAVLSGYAQNGLGEEAVRLYR 132

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
           +M ++ + P   +L  +LSAC+K     LG  IH  +    F    + F+ NALI +YL+
Sbjct: 133 EMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGF--FSETFVGNALISLYLR 190

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           C +   A +VF +M   + V++N++I+G    G    AL IF  MQ  GL PD  T+  +
Sbjct: 191 CRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASL 250

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L +C+ +G L  GK +H+YL K  ++ D  +  +L+D+Y K G I++A  +F S    +V
Sbjct: 251 LAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNV 310

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFL 450
             +  M+V         K+ DIF  M   G+ P++ T+  +L  C+H G +  G + H L
Sbjct: 311 VLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSL 370

Query: 451 DMSRVYNLQPQTEHY--GCMVDLFGRAGLIREA---LDLIKSMPLV 491
            +   +    Q++ Y  G ++D++ + G + +A   LD+I+   +V
Sbjct: 371 TIKNGF----QSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVV 412


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 198/575 (34%), Positives = 314/575 (54%), Gaps = 21/575 (3%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQ-----TQILYDKIISLSRGNEIENL----SLQNPQV 83
           +SK++ Q +  H+ IIK G   ++        +Y K      G  I+ +    +++ P +
Sbjct: 326 NSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKC-----GLAIDAIGVFKTIKKPDI 380

Query: 84  YLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
            +++ +I CL       E+I L+  M +   LPN YT+  +L A   + +L+ GQ +HA 
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHAC 440

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
             K    ++V V N L+ +Y   G +    KL+         RDL+SW   +        
Sbjct: 441 VWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYE----SMVDRDLISWNAYLSGLHDCGM 496

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
               +  F+ M +    P+    + +L +CS L D+  G ++H +I  N   L  + F+ 
Sbjct: 497 YDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ--LDDNNFVC 554

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
            ALIDMY KC  +  A   F+ + V+++ +W  +I       Q ++AL+ FR+MQ  G+K
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P++FTL   L+ C+++  LE G+ +H+ + K+   +D F+G+ALVDMYAKCG +++A  +
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEAL 674

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F ++  RD  ++  +I G A +G+  KAL  F  M   GI PD VTF G+LSACSH GLV
Sbjct: 675 FEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLV 734

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           EEG +HF  M R + + P  +H  CMVD+ GR G   E  D I+ M L  +A +W  +LG
Sbjct: 735 EEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLG 794

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           A K+H  + L E     L   +PE + +YIL++NI++++ RW +  ++R  M  + VKK 
Sbjct: 795 ASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKE 854

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           PGCS VE  G+ + F   D SHP+  EI+  LDE+
Sbjct: 855 PGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDEL 889



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 236/494 (47%), Gaps = 29/494 (5%)

Query: 19  FQQL---SLLHQSPRLESSKSVGQLKQFHAFIIKTGS--PQHQTQILYDKI-ISLSRGN- 71
           FQ L   S LH SP+   S       +F  F I+  S   Q   +   D I IS+S+G  
Sbjct: 17  FQNLLISSWLHSSPQF--SNKFQNTTRFLFFPIRRSSFKVQLDPRCPSDSIGISMSKGQF 74

Query: 72  --EIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ 129
             E +N+    P  Y +NF  Q   +A   +     ++ L        Y+   +L+ C  
Sbjct: 75  GCEFKNVVHNFP--YRFNFEHQKTEDAKGNQVCWSSKKKL------KYYS--SMLRECAS 124

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
            +SL V + +H   +K  +  + +++ +L+ +YA C    + +      + P   RD+VS
Sbjct: 125 KRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRY--SAYARLVLAKMPD--RDVVS 180

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           WT LIQ  V   +  ++I  F +M    + P+   L   L ACS    L LG ++H    
Sbjct: 181 WTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAF 240

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
                L  D+F+ +AL+D+Y KCG I  A K+F  MP +N V+WN ++ G   RG     
Sbjct: 241 K--LGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGV 298

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           L +F  M  L +K ++FTL  VL  CAN   L+ G+ +H+ + K     + FIG  LVDM
Sbjct: 299 LKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDM 358

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           Y+KCG    A GVF+++K  D+  ++A+I  L   G++ +++ +F  M      P++ T 
Sbjct: 359 YSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTI 418

Query: 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
             +LSA ++ G ++ G +        Y  +        +V ++ + G + +   L +SM 
Sbjct: 419 CSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM- 476

Query: 490 LVPDAFVWGALLGA 503
           +  D   W A L  
Sbjct: 477 VDRDLISWNAYLSG 490


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 190/532 (35%), Positives = 298/532 (56%), Gaps = 7/532 (1%)

Query: 77  SLQNPQVYLYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           +L NP    YN II   +  +  L+A+ +++ +    L  +  +L   L AC   +    
Sbjct: 299 TLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLE 358

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G Q+H  ++K  L  N+ V NT++ +Y  CG +     +F        +RD VSW  +I 
Sbjct: 359 GIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFE----EMERRDAVSWNAIIA 414

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           A+ + +   + +  F  M ++ + PD      V+ AC+    L+ G +IH  I  +   L
Sbjct: 415 AHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGL 474

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             D F+ +AL+DMY KCG +  A K+   +  K  VSWNS+I+G + + Q + A   F +
Sbjct: 475 --DWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQ 532

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M  +G+ PD++T   VL+ CAN+  +ELGK +H  + K  +++D +I + LVDMY+KCG 
Sbjct: 533 MLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGN 592

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +  +  +F     RD  +++AMI   A HG   KA+++F EM  + ++P+   F+ VL A
Sbjct: 593 MQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRA 652

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           C+H G V++G  +F  M   Y L PQ EHY CMVDL GR+G + EAL LI+SMP   D  
Sbjct: 653 CAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDV 712

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           +W  LL  CK+   VE+AE    +L++ +P+   AY+L+ N+Y+    W E  K+R  MK
Sbjct: 713 IWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMK 772

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             K+KK PGCS +EV  E + F  GDK+HP++ EIY+    ++ + K  GY+
Sbjct: 773 NCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYEQTHLLVDEMKWAGYV 824



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/509 (27%), Positives = 236/509 (46%), Gaps = 50/509 (9%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T  ++L+ C   ++L  G+QVH   + T  +  +YV N L++ Y  C   K  +    F 
Sbjct: 8   TFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFY--CKSSKMNYAFKVFD 65

Query: 179 QHPQ-----------------------------AQRDLVSWTTLIQAYVKMDYPTEAILS 209
           + PQ                              +RD+VSW +L+  Y+      ++I  
Sbjct: 66  RMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F  M    +  D     ++L ACS + D  LG+++H       F    DV   +AL+DMY
Sbjct: 126 FVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFE--NDVVTGSALVDMY 183

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            KC  +  A +VF EMP +N+V W+++IAG     +F E L +F+ M  +G+     T  
Sbjct: 184 SKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYA 243

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            V  SCA +   +LG  +H +  K+    D  IG A +DMYAKC R+  A+ VF ++   
Sbjct: 244 SVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNP 303

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-H 448
              SY A+IVG A   +  KALDIF  + +  +  DE++  G L+ACS      EG + H
Sbjct: 304 PRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLH 363

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
            L +           +   ++D++G+ G + EA  + + M    DA  W A++ A + + 
Sbjct: 364 GLAVKCGLGFNICVAN--TILDMYGKCGALMEACLIFEEMER-RDAVSWNAIIAAHEQNE 420

Query: 509 KVELAEIVMENLVR--FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT---- 562
           ++     +  +++R   EP+ D  Y  +    +     ++AL    ++  R +K      
Sbjct: 421 EIVKTLSLFVSMLRSTMEPD-DFTYGSVVKACAG----QQALNYGTEIHGRIIKSGMGLD 475

Query: 563 --PGCSLVEVYGEFYEFRKGDKSHPKTLE 589
              G +LV++YG+     + +K H +  E
Sbjct: 476 WFVGSALVDMYGKCGMLMEAEKIHARLEE 504


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 188/520 (36%), Positives = 307/520 (59%), Gaps = 36/520 (6%)

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
           +Y L  +LK C    +L+   Q H + +   L  +  + +  +   +  G     H +F 
Sbjct: 41  SYHLLSLLKQC---SNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFT 97

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
            +  P    D+  + T+I+A    +  TEAIL +  +  ++LR D   L  VL A  +L 
Sbjct: 98  HKTRP----DIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLL 153

Query: 237 DLSLGIKIH------RYITDNHFNLS-----------------------PDVFIHNALID 267
            + +G +IH        ++D H   +                        DV   NA++ 
Sbjct: 154 AIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVA 213

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
            Y K G++ +AR +F+ MP +NV+SW ++IAG     +  EA+ +FRRMQ   ++PD+  
Sbjct: 214 GYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIA 273

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           ++  L++CA++G LELG+W+H Y+DK+ ++    + NAL+DMYAKCG+I++A  VF++M+
Sbjct: 274 MLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNME 333

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            + V ++T+MI GLA+HG   +AL++FS M +  I+P+E+TFV +LSAC H GLVE G  
Sbjct: 334 HKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRW 393

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           +F  M   Y ++P+ +HYGCM+DL GRAG ++EA +L++ MP   +A +WG+LL A +IH
Sbjct: 394 YFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIH 453

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
              EL +  +++L++ EP   G Y L++NIY+++++W EA  +RK M++  VKK PG S 
Sbjct: 454 GDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSC 513

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +EV    +EF  GDK HP++  I+++L +I  QSK   Y+
Sbjct: 514 IEVNNRVHEFVAGDKLHPQSERIFEVLCKINLQSKIAMYV 553



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 218/432 (50%), Gaps = 58/432 (13%)

Query: 18  TFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS 77
           ++  LSLL Q   L+       L Q H F++  G  Q    IL  + I         + S
Sbjct: 41  SYHLLSLLKQCSNLK------HLHQTHCFMLSRGLDQ--DNILLSRFIEACSSLGFSHYS 92

Query: 78  LQ------NPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQS 130
                    P +YLYN II+ LSN     EAI LY  +L   L  +TY+LP+VLKA  + 
Sbjct: 93  HSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRL 152

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-------------- 176
            ++ VG+Q+H  ++ T L+S+++V   L+++Y+ CG +    +LF               
Sbjct: 153 LAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMV 212

Query: 177 ---------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221
                          F + P  +R+++SWT +I  Y +MD P EAI  F  M    + PD
Sbjct: 213 AGYAKVGDVDNARHLFERMP--ERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPD 270

Query: 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
            + ++  LSAC+ LG L LG  IH YI D H  LS  V ++NALIDMY KCG I  A +V
Sbjct: 271 EIAMLAALSACAHLGALELGEWIHNYI-DKH-GLSKIVPLNNALIDMYAKCGKIEKALEV 328

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           F  M  K+V++W SMI GL   G  +EAL++F  M+   +KP++ T V +L++C ++G +
Sbjct: 329 FKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLV 388

Query: 342 ELGKWVH-----TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYT 395
           E+G+W        Y  K  I   G     ++D+  + G + +A  + R M    +   + 
Sbjct: 389 EMGRWYFKCMGTKYGIKPKIQHYG----CMIDLLGRAGFLQEAQELVRGMPFEANAPIWG 444

Query: 396 AMIVGLAIHGKA 407
           +++    IHG A
Sbjct: 445 SLLAAARIHGDA 456


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 199/569 (34%), Positives = 313/569 (55%), Gaps = 51/569 (8%)

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           +N I+   +   + + A+ ++  M    G+ P+  +L  VL AC    +   G+QVH Y+
Sbjct: 198 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 257

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHK------------------------------ 173
           +++ L  +V+V N ++ +YA CG+++  +K                              
Sbjct: 258 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDAL 317

Query: 174 -LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
            LF   +  + + ++V+W+ +I  Y +     EA+  F  M      P+ + LV +LS C
Sbjct: 318 GLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGC 377

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSP-----DVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +  G L  G + H +      NL       D+ + NALIDMY KC +  +AR +FD +P 
Sbjct: 378 ALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPP 437

Query: 288 KN--VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF------TLVCVLNSCANIG 339
           K+  VV+W  +I G    G+  EAL++F +M    L+PD+F      T+ C L +CA +G
Sbjct: 438 KDRSVVTWTVLIGGNAQHGEANEALELFSQM----LQPDNFVMPNAFTISCALMACARLG 493

Query: 340 WLELGKWVHTYLDKNHINTDG-FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
            L  G+ +H Y+ +N   +   F+ N L+DMY+K G +D A  VF +M  R+  S+T+++
Sbjct: 494 ALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLM 553

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G  +HG+  +AL IF EM +VG+ PD VTFV VL ACSH+G+V++G  +F  M++ + +
Sbjct: 554 TGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGV 613

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P  EHY CMVDL  RAG + EA++LI+ MP+ P   VW ALL AC+++A VEL E    
Sbjct: 614 VPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAAN 673

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            L+  E   DG+Y L++NIY++   WK+  ++R  MK   +KK PGCS V+       F 
Sbjct: 674 QLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFF 733

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            GD SHP + +IY LL ++M + K  GY+
Sbjct: 734 AGDWSHPMSQQIYDLLRDLMQRIKALGYV 762



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 169/547 (30%), Positives = 262/547 (47%), Gaps = 71/547 (12%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQ 82
           +L HQ   L S++ +      H  ++  G P   T I+   +   S    +  L   +P 
Sbjct: 34  TLFHQCKSLASAELI------HQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPS 87

Query: 83  ---VYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
              V+ +N +I+   +   LE  + LYR M   G  P+ YT P+VLKAC +  S R G  
Sbjct: 88  SHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGAS 147

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           VHA    +    NV+V N L+ +Y  CG  +   ++F      +   DLVSW +++ AY+
Sbjct: 148 VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFD-EMRERGVGDLVSWNSIVAAYM 206

Query: 199 KMDYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           +      A+  F  M +   +RPD + LV VL AC+ +G  S G ++H Y   +   L  
Sbjct: 207 QGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS--GLFE 264

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK---------- 307
           DVF+ NA++DMY KCG +  A KVF+ M VK+VVSWN+M+ G +  G+F           
Sbjct: 265 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIR 324

Query: 308 -------------------------EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
                                    EALD+FR+M+  G +P+  TLV +L+ CA  G L 
Sbjct: 325 EEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLL 384

Query: 343 LGKWVHTY-------LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--KCRDVYS 393
            GK  H +       LD+N    D  + NAL+DMY+KC     A  +F  +  K R V +
Sbjct: 385 HGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVT 444

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVG--IEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
           +T +I G A HG+A +AL++FS+M Q    + P+  T    L AC+  G +      F  
Sbjct: 445 WTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR-----FGR 499

Query: 452 MSRVYNLQPQTEH-----YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
               Y L+ + E        C++D++ ++G +  A  +  +M    +   W +L+    +
Sbjct: 500 QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQ-RNGVSWTSLMTGYGM 558

Query: 507 HAKVELA 513
           H + E A
Sbjct: 559 HGRGEEA 565


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 198/575 (34%), Positives = 314/575 (54%), Gaps = 21/575 (3%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQ-----TQILYDKIISLSRGNEIENL----SLQNPQV 83
           +SK++ Q +  H+ IIK G   ++        +Y K      G  I+ +    +++ P +
Sbjct: 326 NSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKC-----GLAIDAIGVFKTIKKPDI 380

Query: 84  YLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
            +++ +I CL       E+I L+  M +   LPN YT+  +L A   + +L+ GQ +HA 
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHAC 440

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
             K    ++V V N L+ +Y   G +    KL+         RDL+SW   +        
Sbjct: 441 VWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYE----SMVDRDLISWNAYLSGLHDCGM 496

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
               +  F+ M +    P+    + +L +CS L D+  G ++H +I  N   L  + F+ 
Sbjct: 497 YDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ--LDDNNFVC 554

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
            ALIDMY KC  +  A   F+ + V+++ +W  +I       Q ++AL+ FR+MQ  G+K
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P++FTL   L+ C+++  LE G+ +H+ + K+   +D F+G+ALVDMYAKCG +++A  +
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEAL 674

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F ++  RD  ++  +I G A +G+  KAL  F  M   GI PD VTF G+LSACSH GLV
Sbjct: 675 FEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLV 734

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           EEG +HF  M R + + P  +H  CMVD+ GR G   E  D I+ M L  +A +W  +LG
Sbjct: 735 EEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLG 794

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           A K+H  + L E     L   +PE + +YIL++NI++++ RW +  ++R  M  + VKK 
Sbjct: 795 ASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKE 854

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           PGCS VE  G+ + F   D SHP+  EI+  LDE+
Sbjct: 855 PGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDEL 889



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 236/494 (47%), Gaps = 29/494 (5%)

Query: 19  FQQL---SLLHQSPRLESSKSVGQLKQFHAFIIKTGS--PQHQTQILYDKI-ISLSRGN- 71
           FQ L   S LH SP+   S       +F  F I+  S   Q   +   D I IS+S+G  
Sbjct: 17  FQNLLISSWLHSSPQF--SNKFQNTTRFLFFPIRRSSFKVQLDPRCPSDSIGISMSKGQF 74

Query: 72  --EIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ 129
             E +N+    P  Y +NF  Q   +A   +     ++ L        Y+   +L+ C  
Sbjct: 75  GCEFKNVVHNFP--YRFNFEHQKTEDAKGNQVCWSSKKKL------KYYS--SMLRECAS 124

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
            +SL V + +H   +K  +  + +++ +L+ +YA C    + +      + P   RD+VS
Sbjct: 125 KRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRY--SAYARLVLAKMPD--RDVVS 180

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           WT LIQ  V   +  ++I  F +M    + P+   L   L ACS    L LG ++H    
Sbjct: 181 WTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAF 240

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
                L  D+F+ +AL+D+Y KCG I  A K+F  MP +N V+WN ++ G   RG     
Sbjct: 241 K--LGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGV 298

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           L +F  M  L +K ++FTL  VL  CAN   L+ G+ +H+ + K     + FIG  LVDM
Sbjct: 299 LKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDM 358

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           Y+KCG    A GVF+++K  D+  ++A+I  L   G++ +++ +F  M      P++ T 
Sbjct: 359 YSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTI 418

Query: 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
             +LSA ++ G ++ G +        Y  +        +V ++ + G + +   L +SM 
Sbjct: 419 CSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM- 476

Query: 490 LVPDAFVWGALLGA 503
           +  D   W A L  
Sbjct: 477 VDRDLISWNAYLSG 490


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 204/572 (35%), Positives = 322/572 (56%), Gaps = 12/572 (2%)

Query: 41  KQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           KQ H ++++ G     + +      Y K   +  G ++ N  +    V     I  C+ N
Sbjct: 275 KQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQN 334

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           +   +A+ L+ EM+ KG  P+ +    VL +C   Q+L+ G+QVHAY++K  + ++ +V 
Sbjct: 335 SFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVK 394

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ +YA C  +    K+F       A  ++VS+  +I+ Y + D   EA+  F +M  
Sbjct: 395 NGLIDMYAKCDSLTNARKVFDL----VAAINVVSYNAMIEGYSRQDKLVEALDLFREMRL 450

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
           +   P  +  V +L   S L  L L  +IH  I    F +S D F  +ALID+Y KC  +
Sbjct: 451 SLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIK--FGVSLDSFAGSALIDVYSKCSCV 508

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             AR VF+E+  +++V WN+M +G + + + +E+L +++ +Q   LKP++FT   V+ + 
Sbjct: 509 GDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAA 568

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           +NI  L  G+  H  + K  ++ D F+ N+LVDMYAKCG I+++   F S   RD+  + 
Sbjct: 569 SNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWN 628

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI   A HG A KAL++F  M   G++P+ VTFVG+LSACSHAGL++ G  HF  MS+ 
Sbjct: 629 SMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSK- 687

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + ++P  +HY CMV L GRAG I EA + +K MP+ P A VW +LL AC++   VEL   
Sbjct: 688 FGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTY 747

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             E  +  +P   G+YIL++NI++SK  W     +R+KM   +V K PG S +EV  E +
Sbjct: 748 AAEMAISCDPADSGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNNEVH 807

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F   D +H  +  I  +LD ++ Q K  GY+
Sbjct: 808 RFIARDTAHRDSTLISLVLDNLILQIKGFGYV 839



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/397 (33%), Positives = 201/397 (50%), Gaps = 13/397 (3%)

Query: 41  KQFHAFIIKTGSPQHQTQIL------YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS 94
           K+ HA I+  G  QH   ++      Y K+   S   ++ +       V   + +     
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130

Query: 95  NANPLEAIALY-REMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
           +   +EA+ L+ R M      PN Y L  V++AC Q  +L    Q+H + +K   + +VY
Sbjct: 131 HGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVY 190

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V  +L+  YA  G +     +F   +     +  V+WT +I  Y K+     ++  F  M
Sbjct: 191 VGTSLIDFYAKRGYVDEARLIFDGLK----VKTTVTWTAIIAGYAKLGRSEVSLKLFNQM 246

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
            + ++ PD  ++  VLSACS L  L  G +IH Y+    F++  DV + N +ID YLKC 
Sbjct: 247 REGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDM--DVSVVNGIIDFYLKCH 304

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
            + + RK+F+ +  K+VVSW +MIAG        +A+D+F  M   G KPD F    VLN
Sbjct: 305 KVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLN 364

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           SC ++  L+ G+ VH Y  K +I+ D F+ N L+DMYAKC  +  A  VF  +   +V S
Sbjct: 365 SCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVS 424

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           Y AMI G +   K  +ALD+F EM      P  +TFV
Sbjct: 425 YNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFV 461



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 211/421 (50%), Gaps = 8/421 (1%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           ++ L+ +M    + P+ Y +  VL AC   + L  G+Q+H Y ++     +V V N ++ 
Sbjct: 239 SLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIID 298

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
            Y  C  +K   KLF    +    +D+VSWTT+I   ++  +  +A+  F +M +   +P
Sbjct: 299 FYLKCHKVKTGRKLF----NRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKP 354

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D      VL++C  L  L  G ++H Y      N+  D F+ N LIDMY KC ++ +ARK
Sbjct: 355 DAFGCTSVLNSCGSLQALQKGRQVHAYAIK--VNIDNDDFVKNGLIDMYAKCDSLTNARK 412

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VFD +   NVVS+N+MI G + + +  EALD+FR M+     P   T V +L   +++  
Sbjct: 413 VFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFL 472

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           LEL   +H  + K  ++ D F G+AL+D+Y+KC  +  A  VF  +  RD+  + AM  G
Sbjct: 473 LELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSG 532

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
            +   +  ++L ++ ++    ++P+E TF  V++A S+   +  G + F +      L  
Sbjct: 533 YSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHG-QQFHNQVIKMGLDD 591

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
                  +VD++ + G I E+     S     D   W +++     H     A  V E +
Sbjct: 592 DPFVTNSLVDMYAKCGSIEESHKAFSSTNQ-RDIACWNSMISTYAQHGDAAKALEVFERM 650

Query: 521 V 521
           +
Sbjct: 651 I 651



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 186/371 (50%), Gaps = 37/371 (9%)

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           +V++ NTL+  Y+   L     KLF    H    R+LV+W++++  Y +  Y  EA+L F
Sbjct: 86  DVFLVNTLLHAYSKMNLQSDAQKLFDTMPH----RNLVTWSSMVSMYTQHGYSVEALLLF 141

Query: 211 FD-MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
              M   + +P+  IL  V+ AC++LG+LS  +++H ++    F    DV++  +LID Y
Sbjct: 142 CRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGF--VQDVYVGTSLIDFY 199

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            K G +  AR +FD + VK  V+W ++IAG    G+ + +L +F +M+   + PD + + 
Sbjct: 200 AKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVIS 259

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            VL++C+ + +LE GK +H Y+ +   + D  + N ++D Y KC ++     +F  +  +
Sbjct: 260 SVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDK 319

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG---- 445
           DV S+T MI G   +     A+D+F EM + G +PD      VL++C     +++G    
Sbjct: 320 DVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVH 379

Query: 446 ------------------------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIR 479
                                   C    +  +V++L        Y  M++ + R   + 
Sbjct: 380 AYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLV 439

Query: 480 EALDLIKSMPL 490
           EALDL + M L
Sbjct: 440 EALDLFREMRL 450


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 181/477 (37%), Positives = 290/477 (60%), Gaps = 11/477 (2%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVC----GLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           +Q+HA+S++  +  +       +  Y V       +   HK+F   + P    ++  W T
Sbjct: 34  RQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPI---NVFIWNT 90

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANL-RPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
           LI+ Y ++     A   + +M  + L  PD      ++ A + + D+ LG  IH  +  +
Sbjct: 91  LIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS 150

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
            F     +++ N+L+ +Y  CG++ SA KVFD+MP K++V+WNS+I G    G+ +EAL 
Sbjct: 151 GFGSL--IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           ++  M   G+KPD FT+V +L++CA IG L LGK VH Y+ K  +  +    N L+D+YA
Sbjct: 209 LYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFV 430
           +CGR+++A  +F  M  ++  S+T++IVGLA++G   +A+++F  M S  G+ P E+TFV
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
           G+L ACSH G+V+EG ++F  M   Y ++P+ EH+GCMVDL  RAG +++A + IKSMP+
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPM 388

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            P+  +W  LLGAC +H   +LAE     +++ EP   G Y+L++N+Y+S+ RW +  K+
Sbjct: 389 QPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKI 448

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           RK+M    VKK PG SLVEV    +EF  GDKSHP++  IY  L E+  + ++ GY+
Sbjct: 449 RKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYV 505



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 227/406 (55%), Gaps = 26/406 (6%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQ-----ILYDKIISLSRGNEIENL-----SLQNP-QVY 84
           S+ +L+Q HAF I+ G      +     I Y  ++SL     +         ++ P  V+
Sbjct: 29  SITKLRQIHAFSIRHGVSISDAELGKHLIFY--LVSLPSPPPMSYAHKVFSKIEKPINVF 86

Query: 85  LYNFIIQCLSN-ANPLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           ++N +I+  +   N + A +LYREM + GL+ P+T+T P+++KA      +R+G+ +H+ 
Sbjct: 87  IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +++   S +YV N+L+ LYA CG + + +K+F        ++DLV+W ++I  + +   
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVF----DKMPEKDLVAWNSVINGFAENGK 202

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
           P EA+  + +M    ++PDG  +V +LSAC+K+G L+LG ++H Y+      L+ ++   
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI--KVGLTRNLHSS 260

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GL 321
           N L+D+Y +CG +  A+ +FDEM  KN VSW S+I GL   G  KEA+++F+ M+   GL
Sbjct: 261 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 320

Query: 322 KPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
            P + T V +L +C++ G ++ G ++     ++  I         +VD+ A+ G++ +A+
Sbjct: 321 LPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAY 380

Query: 381 GVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
              +SM  + +V  +  ++    +HG +   L  F+ +  + +EP+
Sbjct: 381 EYIKSMPMQPNVVIWRTLLGACTVHGDS--DLAEFARIQILQLEPN 424


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 189/517 (36%), Positives = 299/517 (57%), Gaps = 46/517 (8%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK C     L+   ++HA+ +K +L  + ++   ++ +       +  + LF     P 
Sbjct: 20  ILKNCPNIVELK---KIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPN 76

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-----QANLRPDGMILVIVLSACSKLGD 237
           A      +  +I+AY        AI  +  M      +  + PD      V+ +C+ L  
Sbjct: 77  A----FLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMC 132

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
             LG ++H ++    F    +  + N+L++MY+KC ++  A KVF+EM  ++ VSWN++I
Sbjct: 133 YDLGKQVHGHVFK--FGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLI 190

Query: 298 AGLTHRGQFK-------------------------------EALDIFRRMQGLGLKPDDF 326
           +G    GQ +                               +AL+ FRRMQ +G++PD+ 
Sbjct: 191 SGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEI 250

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           +LV VL +CA +G LELGKW+H Y DK     +  + NAL++MYAKCG ID+   +F  M
Sbjct: 251 SLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQM 310

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             RDV S++ MIVGLA HG+A +A+++F EM +  IEP+ +TFVG+LSAC+HAGL+ EG 
Sbjct: 311 NERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGL 370

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           ++F  M R YN++P  EHYGC+V+L G +G + +AL+LIK MP+ PD+ +WG+LL +C+ 
Sbjct: 371 RYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRS 430

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H+ +E+A I ME+L+  EP   G Y+L++N+Y+   +W    ++RK M+ + +KKTPGCS
Sbjct: 431 HSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCS 490

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLD-EIMHQSK 602
            +EV     EF  GD S P +  IY++L   +MHQ +
Sbjct: 491 SIEVDNMVQEFASGDDSKPFSKAIYRVLKLLVMHQRR 527



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 202/402 (50%), Gaps = 52/402 (12%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGN---EIENL---SLQNPQ 82
           P L++  ++ +LK+ HA I+K    Q  +  L  K++ +   +   E  NL    + +P 
Sbjct: 19  PILKNCPNIVELKKIHAHIVKFSLSQ--SSFLVTKMVDVCNHHAETEYANLLFKRVADPN 76

Query: 83  VYLYNFIIQCLS-NANPLEAIALYREMLIKG-----LLPNTYTLPYVLKACWQSQSLRVG 136
            +LYN +I+    N   + AI +Y++ML        + P+ +T P+V+K+C       +G
Sbjct: 77  AFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLG 136

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +QVH +  K    SN  V N+L+ +Y  C  +   HK+F        +RD VSW TLI  
Sbjct: 137 KQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVF----EEMTERDAVSWNTLISG 192

Query: 197 YVKMDYPTEAILSFFDM-------------------CQAN------------LRPDGMIL 225
           +V++     A   F +M                   C A+            + PD + L
Sbjct: 193 HVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISL 252

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
           V VL AC++LG L LG  IH Y     F    ++ + NALI+MY KCG+I   R++FD+M
Sbjct: 253 VSVLPACAQLGALELGKWIHFYADKAGF--LRNICVCNALIEMYAKCGSIDEGRRLFDQM 310

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             ++V+SW++MI GL + G+  EA+++F+ MQ   ++P+  T V +L++CA+ G L  G 
Sbjct: 311 NERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGL 370

Query: 346 WVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSM 386
                + +++    G      LV++    GR+DQA  + + M
Sbjct: 371 RYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKM 412



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 168/403 (41%), Gaps = 78/403 (19%)

Query: 224 ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
           I V +L  C  + +L    KIH +I    F+LS   F+   ++D+         A  +F 
Sbjct: 16  IFVPILKNCPNIVELK---KIHAHIVK--FSLSQSSFLVTKMVDVCNHHAETEYANLLFK 70

Query: 284 EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-----LKPDDFTLVCVLNSCANI 338
            +   N   +N+MI    H   +  A+ ++++M G       + PD FT   V+ SCA +
Sbjct: 71  RVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGL 130

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD-------- 390
              +LGK VH ++ K    ++  + N+LV+MY KC  +D A  VF  M  RD        
Sbjct: 131 MCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLI 190

Query: 391 -----------------------VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
                                  ++S+TA++ G A  G    AL+ F  M  VGIEPDE+
Sbjct: 191 SGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEI 250

Query: 428 TFVGVLSACSHAGLVEEG------------------CKHFLDM----------SRVYNLQ 459
           + V VL AC+  G +E G                  C   ++M           R+++  
Sbjct: 251 SLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQM 310

Query: 460 PQTE--HYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAE 514
            + +   +  M+      G   EA++L + M    + P+   +  LL AC     +    
Sbjct: 311 NERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGL 370

Query: 515 IVMENLVR---FEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
              E++ R    EP G   Y  + N+     R  +AL+L KKM
Sbjct: 371 RYFESMKRDYNIEP-GVEHYGCLVNLLGLSGRLDQALELIKKM 412



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 127/248 (51%), Gaps = 12/248 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+  +R M + G+ P+  +L  VL AC Q  +L +G+ +H Y+ K   L N+ V N L+
Sbjct: 232 DALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALI 291

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I    +LF        +RD++SW+T+I          EAI  F +M +A + 
Sbjct: 292 EMYAKCGSIDEGRRLF----DQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIE 347

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  V +LSAC+  G L+ G++    +  + +N+ P V  +  L+++    G +  A 
Sbjct: 348 PNIITFVGLLSACAHAGLLNEGLRYFESMKRD-YNIEPGVEHYGCLVNLLGLSGRLDQAL 406

Query: 280 KVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           ++  +MP+K +   W S+++        + A+     +  L L+P D     +L++    
Sbjct: 407 ELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHL--LELEPADTGNYVLLSNL--- 461

Query: 339 GWLELGKW 346
            + +LGKW
Sbjct: 462 -YADLGKW 468


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 185/488 (37%), Positives = 295/488 (60%), Gaps = 17/488 (3%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK C     L+   ++HA+ +K +L  + ++   ++ +    G  +  + LF     P 
Sbjct: 65  ILKDCPNIVELK---KIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPN 121

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-----QANLRPDGMILVIVLSACSKLGD 237
           A      +  +I+AY        AI  +  M      +  + PD      V+ +C+ L  
Sbjct: 122 A----FLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMC 177

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN--VVSWNS 295
             LG ++H ++    F    +  + N+L++MY+KC ++  A +VF+EM  ++  + SW +
Sbjct: 178 YDLGKQVHGHVFK--FGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTA 235

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           +++G    G + +AL+ FRRMQ +G++PD+ +LV VL  CA +G LELGKW+H Y DK  
Sbjct: 236 IVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAG 295

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
              +  + NAL++MYAKCG IDQ   +F  MK RDV S++ MIVGLA HG+A +A+++F 
Sbjct: 296 FLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQ 355

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           EM +  IEP  +TFVG+L+AC+HAGL+ EG ++F  M R YN++P  EHYGC+V+L G +
Sbjct: 356 EMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLS 415

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
           G + +AL+L+K MP  PD+ +WG+LL +C+ H  +++A I ME+L+  EP   G Y+L++
Sbjct: 416 GRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLS 475

Query: 536 NIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           N+Y+   +W    ++RK M+ + +KKTPGCS +EV     EF  GD S P +  I ++L 
Sbjct: 476 NLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLK 535

Query: 596 -EIMHQSK 602
             +MHQSK
Sbjct: 536 LLVMHQSK 543



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 194/371 (52%), Gaps = 19/371 (5%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSR---GNEIENL---SLQNPQ 82
           P L+   ++ +LK+ HA I+K      Q+  L  K++ +       E  NL    + +P 
Sbjct: 64  PILKDCPNIVELKKIHAHIVKFS--LSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPN 121

Query: 83  VYLYNFIIQCLS-NANPLEAIALYREML-----IKGLLPNTYTLPYVLKACWQSQSLRVG 136
            +LYN +I+    N   + AI +Y++ML        + P+ +T P+V+K+C       +G
Sbjct: 122 AFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLG 181

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +QVH +  K    SN  V N+L+ +Y  C  +   H++  F +  +    + SWT ++  
Sbjct: 182 KQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRV--FEEMTERDATIFSWTAIVSG 239

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y ++    +A+  F  M    + PD + LV VL  C++LG L LG  IH Y     F   
Sbjct: 240 YARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGF--L 297

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            ++ + NALI+MY KCG+I   R++FD+M  ++V+SW++MI GL + G+ +EA+++F+ M
Sbjct: 298 RNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEM 357

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGR 375
           Q   ++P   T V +L +CA+ G L  G      + +++    G      LV++    GR
Sbjct: 358 QKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGR 417

Query: 376 IDQAFGVFRSM 386
           +DQA  + + M
Sbjct: 418 LDQALELVKKM 428



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 151/314 (48%), Gaps = 19/314 (6%)

Query: 41  KQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLS 94
           KQ H  + K G       ++    +Y K  SL   + + E ++ ++  ++ +  I+   +
Sbjct: 182 KQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYA 241

Query: 95  NANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
                 +A+  +R M + G+ P+  +L  VL  C Q  +L +G+ +H Y+ K   L N+ 
Sbjct: 242 RIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNIC 301

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V N L+ +YA CG I    +LF        +RD++SW+T+I          EAI  F +M
Sbjct: 302 VCNALIEMYAKCGSIDQGRRLF----DQMKERDVISWSTMIVGLANHGRAREAIELFQEM 357

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
            +A + P  +  V +L+AC+  G L+ G++    +  + +N+ P V  +  L+++    G
Sbjct: 358 QKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRD-YNIEPGVEHYGCLVNLLGLSG 416

Query: 274 NIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
            +  A ++  +MP K +   W S+++     G  K A+     +  L L+P D     +L
Sbjct: 417 RLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHL--LELEPADTGNYVLL 474

Query: 333 NSCANIGWLELGKW 346
           ++     + +LGKW
Sbjct: 475 SNL----YADLGKW 484


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 286/527 (54%), Gaps = 42/527 (7%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL-SNVY 153
           N    EA++++R+M+++G+ PN+ T+   + AC     LR G+++H Y +K   L S++ 
Sbjct: 340 NGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 399

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI------ 207
           V N+L+  YA C  ++   + F   +    Q DLVSW  ++  Y       EAI      
Sbjct: 400 VGNSLVDYYAKCRSVEVARRKFGMIK----QTDLVSWNAMLAGYALRGSHEEAIELLSEM 455

Query: 208 ----------------------------LSFFD-MCQANLRPDGMILVIVLSACSKLGDL 238
                                       L FF  M    + P+   +   L+AC ++ +L
Sbjct: 456 KFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNL 515

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
            LG +IH Y+  NH  LS  V   +ALI MY  C ++  A  VF E+  ++VV WNS+I+
Sbjct: 516 KLGKEIHGYVLRNHIELSTGV--GSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIIS 573

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
                G+   ALD+ R M    ++ +  T+V  L +C+ +  L  GK +H ++ +  ++T
Sbjct: 574 ACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDT 633

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
             FI N+L+DMY +CG I ++  +F  M  RD+ S+  MI    +HG    A+++F    
Sbjct: 634 CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFR 693

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
            +G++P+ +TF  +LSACSH+GL+EEG K+F  M   Y + P  E Y CMVDL  RAG  
Sbjct: 694 TMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQF 753

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            E L+ I+ MP  P+A VWG+LLGAC+IH   +LAE     L   EP+  G Y+LM NIY
Sbjct: 754 NETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIY 813

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585
           S+  RW++A K+R  MKER V K PGCS +EV  + + F  GD SHP
Sbjct: 814 SAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHP 860



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 172/369 (46%), Gaps = 48/369 (13%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E I L+  M+ +G+ P+ +  P V KAC + ++ RVG+ V+ Y +      N  V  +++
Sbjct: 173 ETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSIL 232

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            ++  CG +    + F   +     +D+  W  ++  Y       +A+    DM  + ++
Sbjct: 233 DMFIKCGRMDIARRFFEEIEF----KDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVK 288

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +                                       NA+I  Y + G    A 
Sbjct: 289 PDQVTW-------------------------------------NAIISGYAQSGQFEEAS 311

Query: 280 KVFDEMP-----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           K F EM        NVVSW ++IAG    G   EAL +FR+M   G+KP+  T+   +++
Sbjct: 312 KYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSA 371

Query: 335 CANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           C N+  L  G+ +H Y  K   +++D  +GN+LVD YAKC  ++ A   F  +K  D+ S
Sbjct: 372 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 431

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           + AM+ G A+ G   +A+++ SEM   GIEPD +T+ G+++  +  G  +   + F  M 
Sbjct: 432 WNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMH 491

Query: 454 RVYNLQPQT 462
            +  + P T
Sbjct: 492 SM-GMDPNT 499



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 201/459 (43%), Gaps = 72/459 (15%)

Query: 63  KIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPY 122
           +I   S G  +    + N    L    +  +   NP E I +Y                 
Sbjct: 54  RITGFSGGGSVHRNGVLNNAAML----LSSMDLTNPDECIEIYAS--------------- 94

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+ C +  +LR+G QVHA  +   +    ++ + L+ +Y   G ++   ++F       
Sbjct: 95  ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFD----KM 150

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
           ++R++ SWT +++ Y  +    E I  F+ M    +RPD  +   V  ACS+L +  +G 
Sbjct: 151 SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 210

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            ++ Y+    F    +  +  +++DM++KCG +  AR+ F+E+  K+V  WN M++G T 
Sbjct: 211 DVYDYMLSIGF--EGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 268

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
           +G+FK+AL     M+  G+KPD  T            W                      
Sbjct: 269 KGEFKKALKCISDMKLSGVKPDQVT------------W---------------------- 294

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKC-----RDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            NA++  YA+ G+ ++A   F  M        +V S+TA+I G   +G  ++AL +F +M
Sbjct: 295 -NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKM 353

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
              G++P+ +T    +SAC++  L+  G +      +V  L         +VD + +   
Sbjct: 354 VLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRS 413

Query: 478 I---REALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           +   R    +IK   LV     W A+L    +    E A
Sbjct: 414 VEVARRKFGMIKQTDLVS----WNAMLAGYALRGSHEEA 448



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 7/224 (3%)

Query: 78  LQNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           L    V ++N II  C  +   + A+ L REM +  +  NT T+   L AC +  +LR G
Sbjct: 560 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG 619

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +++H + ++  L +  ++ N+L+ +Y  CG I+   ++F        QRDLVSW  +I  
Sbjct: 620 KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDL----MPQRDLVSWNVMISV 675

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y    +  +A+  F       L+P+ +    +LSACS  G +  G K  + +    + + 
Sbjct: 676 YGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK-MMKTEYAMD 734

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAG 299
           P V  +  ++D+  + G      +  ++MP + N   W S++  
Sbjct: 735 PAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 778



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 38/254 (14%)

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           +L  C  +  L LG  VH  L  N ++   F+G+ L+++Y + G ++ A  +F  M  R+
Sbjct: 95  ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERN 154

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           V+S+TA++      G   + + +F  M   G+ PD   F  V  ACS       G K   
Sbjct: 155 VFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG-KDVY 213

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
           D       +  +   G ++D+F + G +  A    + +    D F+W             
Sbjct: 214 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF-KDVFMWN------------ 260

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK--KTPGCSLV 568
                                 +M + Y+SK  +K+ALK    MK   VK  +    +++
Sbjct: 261 ----------------------IMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAII 298

Query: 569 EVYGEFYEFRKGDK 582
             Y +  +F +  K
Sbjct: 299 SGYAQSGQFEEASK 312


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 191/512 (37%), Positives = 295/512 (57%), Gaps = 10/512 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EAI L+ +M+  G  P+ +TL  V+ AC   + L +GQQ+H+ +++  L  +  V   L+
Sbjct: 254 EAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313

Query: 160 RLYAVC---GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV-KMDYPTEAILSFFDMCQ 215
            +YA C   G + A  K+F          ++ SWT +I  YV K  Y  EA+  F  M  
Sbjct: 314 NMYAKCSVDGSMCAARKIFD----QILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL 369

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
            ++ P+       L AC+ L  L +G ++  +     F  S    + N+LI MY + G I
Sbjct: 370 THVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGF--SSVNCVANSLISMYARSGRI 427

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             ARK FD +  KN++S+N++I         +EAL++F  ++  G+    FT   +L+  
Sbjct: 428 DDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGA 487

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A+IG +  G+ +H  + K+ +  +  + NAL+ MY++CG I+ AF VF  M+ R+V S+T
Sbjct: 488 ASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWT 547

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           ++I G A HG A +AL++F +M + G+ P+EVT++ VLSACSH GLV EG KHF  M   
Sbjct: 548 SIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTE 607

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + + P+ EHY C+VD+ GR+G + EA+  I SMP   DA VW   LGAC++H  +EL + 
Sbjct: 608 HGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKH 667

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             + ++  EP    AYIL++N+Y+S ++W E   +RK MKE+ + K  GCS VEV  + +
Sbjct: 668 AAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVH 727

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +F  GD SHPK  EIY  L  +  + K  GY+
Sbjct: 728 KFYVGDTSHPKAAEIYDELQNLSVKIKKLGYV 759



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 226/462 (48%), Gaps = 21/462 (4%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +  NP   L   +IQ ++N    +AI+    M+ +G  P+  T    LK C +++S  +G
Sbjct: 27  TFTNPNP-LTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIG 85

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
             VH    ++ L  +    N+L+ LY+ CG  +    +F       + RDL+SW+ ++  
Sbjct: 86  TLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMG---SSRDLISWSAMVSC 142

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           +   +    A+L+F DM +    P+         ACS    +S+G  I  ++    + L 
Sbjct: 143 FANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGY-LQ 201

Query: 257 PDVFIHNALIDMYLKC-GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
            DV +   LIDM++K  G++ SA KVF++MP +N V+W  MI  L   G   EA+D+F  
Sbjct: 202 SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLD 261

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC-- 373
           M   G +PD FTL  V+++CAN+  L LG+ +H+   ++ +  D  +G  L++MYAKC  
Sbjct: 262 MIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSV 321

Query: 374 -GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK-AWKALDIFSEMSQVGIEPDEVTFVG 431
            G +  A  +F  +   +V+S+TAMI G    G    +ALD+F  M    + P+  TF  
Sbjct: 322 DGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSS 381

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI---REALDLIKSM 488
            L AC++   +  G + F    ++            ++ ++ R+G I   R+A D++   
Sbjct: 382 TLKACANLAALRIGEQVFTHAVKL-GFSSVNCVANSLISMYARSGRIDDARKAFDILFEK 440

Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
            L+    V  A       +AK   +E  +E     E +G GA
Sbjct: 441 NLISYNTVIDA-------YAKNLNSEEALELFNEIEDQGMGA 475



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           YN +I   + N N  EA+ L+ E+  +G+  + +T   +L       ++  G+Q+HA  +
Sbjct: 445 YNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVI 504

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K+ L  N  V N L+ +Y+ CG I++  ++F         R+++SWT++I  + K  + T
Sbjct: 505 KSGLKLNQSVCNALISMYSRCGNIESAFQVF----EDMEDRNVISWTSIITGFAKHGFAT 560

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           +A+  F  M +  +RP+ +  + VLSACS +G ++ G K  + +   H  + P +  +  
Sbjct: 561 QALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEH-GVIPRMEHYAC 619

Query: 265 LIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFK 307
           ++D+  + G++  A +  + MP K + + W + +      G  +
Sbjct: 620 IVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLE 663


>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 187/477 (39%), Positives = 275/477 (57%), Gaps = 16/477 (3%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
           +  SL   +Q+HA  +K  L    +V   L+  +++C  +     +F+  Q P    D++
Sbjct: 26  RCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDP----DVL 81

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
            + TLI+A+V+   P  A   FF+M  + +  D      +L ACS    + +   IH  +
Sbjct: 82  LYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQV 141

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
               F L  D+F+ N+LID Y K G +  AR++FDEMP ++ VSWN+++ G    G+   
Sbjct: 142 EKMGFCL--DIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNA 199

Query: 309 ALDIFRRMQG----------LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           A ++F +M             GLK DD T++ +L++CA  G L LGK VH  +++     
Sbjct: 200 AFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKC 259

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
              + NAL+DMYAKCG ++ A  +F  M  +DV S+ A+I GLA+HG   KAL +FS M 
Sbjct: 260 STPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMK 319

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             G  PD+VTFVGVL AC+HAG V+EG  +F  M R Y + P+ EHYGCMVDL GR G +
Sbjct: 320 GEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRL 379

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
           +EA  L+ SMPL P+A +WG LLGAC++H+   LAE V + LV+ E    G   +++NIY
Sbjct: 380 KEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIY 439

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           ++   W     +R +MK   ++K  G S +EV  E +EF   D+SHPK+  IYK +D
Sbjct: 440 AAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTID 496



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 133/427 (31%), Positives = 216/427 (50%), Gaps = 40/427 (9%)

Query: 20  QQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII---SLSRGNEIE-N 75
           Q++S LH+        S+ Q+KQ HA ++K     H+   +  K+I   SL R   +  N
Sbjct: 19  QKISDLHRC------SSLNQVKQIHAQVLKAN--LHRESFVGQKLIAAFSLCRQMTLAVN 70

Query: 76  L--SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQS 132
           +   +Q+P V LYN +I+  + N+ PL A +++ EM   G+  + +T P++LKAC     
Sbjct: 71  VFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVW 130

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           +RV + +HA   K     +++V N+L+  Y   G +    +LF        +RD VSW T
Sbjct: 131 VRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLF----DEMPERDTVSWNT 186

Query: 193 LIQAYVKM-----------DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
           ++  YVK              P   ++S+  M +A L+ D   ++ +LSAC+  G L LG
Sbjct: 187 ILDGYVKAGEMNAAFELFEKMPARNVVSWSTM-EAGLKFDDGTVISILSACAVSGLLGLG 245

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            ++H  I    F  S  V   NALIDMY KCG++ +A  +F  M  K+VVSWN++I GL 
Sbjct: 246 KRVHASIERTRFKCSTPV--SNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLA 303

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDG 360
             G  ++AL +F RM+G G  PD  T V VL +C + G+++ G  + H       +  + 
Sbjct: 304 MHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEV 363

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIF----- 414
                +VD+  + GR+ +AF +  SM    +   +  ++    +H     A ++F     
Sbjct: 364 EHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVK 423

Query: 415 SEMSQVG 421
           SE+S  G
Sbjct: 424 SELSDSG 430


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 201/552 (36%), Positives = 307/552 (55%), Gaps = 63/552 (11%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQ---TQILYDKIISLSRGNEIENL---------SLQNPQV 83
           +VG LKQ HA +I  G   +     +++    +S+   N    +          +  P  
Sbjct: 13  NVGTLKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDT 72

Query: 84  YLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           +++N  I+  S + +P+ A+ALY +M  + + P+ +T P+VLKAC +   +  G  VH  
Sbjct: 73  FMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGR 132

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            ++    SNV V NTL+  +A CG +K    +F        + D+V+W+ LI  Y     
Sbjct: 133 VLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFD----DSDKGDVVAWSALIAGY----- 183

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP--DVF 260
                                         ++ GDLS+  K+        F+  P  D+ 
Sbjct: 184 ------------------------------AQRGDLSVARKL--------FDEMPKRDLV 205

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
             N +I +Y K G + SAR++FDE P+K++VSWN++I G   R   +EAL++F  M G+G
Sbjct: 206 SWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCGVG 265

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHT-YLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
             PD+ T++ +L++CA++G LE G+ VH   ++ N       +GNALVDMYAKCG I +A
Sbjct: 266 ECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKA 325

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             VF  ++ +DV S+ ++I GLA HG A ++L +F EM    + PDEVTFVGVL+ACSHA
Sbjct: 326 VRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHA 385

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           G V+EG ++F  M   Y ++P   H GC+VD+ GRAGL++EA + I SM + P+A VW +
Sbjct: 386 GNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMKIEPNAIVWRS 445

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           LLGACK+H  VELA+   E L+R   +  G Y+L++N+Y+S+  W  A  +RK M +  V
Sbjct: 446 LLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQGEWDGAENVRKLMDDNGV 505

Query: 560 KKTPGCSLVEVY 571
            K  G S VE +
Sbjct: 506 TKNRGSSFVEAF 517


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 193/517 (37%), Positives = 299/517 (57%), Gaps = 10/517 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    +A+ L   M+ +G+  +  TL  VL  C       +   +H Y++K  L   ++V
Sbjct: 146 NTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFV 205

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ +Y   G++   H +F       A RDLV+W ++I A  +      A+  F  M 
Sbjct: 206 CNALIDVYGKLGMLTEAHWVFG----GMALRDLVTWNSIISANEQGGKVAAAVELFHGMM 261

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIK-IHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
           ++ + PD + LV + SA ++ GD  LG K +H Y+    +++  D+   NA++DMY K  
Sbjct: 262 ESGVCPDVLTLVSLASAVAQCGD-ELGAKSVHCYVRRRGWDVG-DIIAGNAMVDMYAKMS 319

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG-LGLKPDDFTLVCVL 332
            I +A+KVFD +P ++VVSWN++I G    G   EA+ I+  M    GLKP   T V VL
Sbjct: 320 KIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVL 379

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            + + +G L+ G  +H    K  +N D ++   L+D+YAKCG++ +A  +F  M  R   
Sbjct: 380 PAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTG 439

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            + A+I GL +HG   KAL +FS+M Q  I+PD VTFV +L+ACSHAGLV++G   F  M
Sbjct: 440 PWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLM 499

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
             VY + P  +HY CMVD+ GRAG + EA + I+SMP+ PD+ VWGALLGAC+IH  VE+
Sbjct: 500 QTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEM 559

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            ++  +NL   +PE  G Y+LM+N+Y+   +W     +R  ++ + ++KTPG S +EV G
Sbjct: 560 GKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKG 619

Query: 573 EFYEFRKGDKS--HPKTLEIYKLLDEIMHQSKNHGYI 607
               F  G ++  HP+  EI + L +++ + K+ GY+
Sbjct: 620 SVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYV 656



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 135/439 (30%), Positives = 224/439 (51%), Gaps = 21/439 (4%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKG---LLPNTYTLPYVLKACWQSQSLR 134
           LQ P + L N +I   S A            L+ G   L P+++T P +++A     S  
Sbjct: 27  LQVPPLLLVNSLIAAFSRAALPRLALPLLRRLLAGAHPLRPDSFTFPPLVRAAPGPAS-- 84

Query: 135 VGQQVHAYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
              Q+HA +++  LL  NV+   +L+  Y   G +   +++F        +RD+ +W  +
Sbjct: 85  -AAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFD----EMPERDVPAWNAM 139

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           +    +     +A+     M    +  D + L  VL  C  LGD +L + +H Y   +  
Sbjct: 140 LSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKH-- 197

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            LS ++F+ NALID+Y K G +  A  VF  M ++++V+WNS+I+     G+   A+++F
Sbjct: 198 GLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELF 257

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFI-GNALVDMYA 371
             M   G+ PD  TLV + ++ A  G  ELG K VH Y+ +   +    I GNA+VDMYA
Sbjct: 258 HGMMESGVCPDVLTLVSLASAVAQCG-DELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYA 316

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFV 430
           K  +ID A  VF ++  RDV S+  +I G   +G A +A+ I+++M +  G++P + TFV
Sbjct: 317 KMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFV 376

Query: 431 GVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
            VL A S+ G +++G + H L +    NL        C++DL+ + G + EA+ L + MP
Sbjct: 377 SVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTT--CLIDLYAKCGKLVEAMFLFEHMP 434

Query: 490 LVPDAFVWGALLGACKIHA 508
                  W A++    +H 
Sbjct: 435 RRSTG-PWNAIIAGLGVHG 452


>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 197/494 (39%), Positives = 286/494 (57%), Gaps = 15/494 (3%)

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLK--ACWQSQSLRVGQQVHAYSMKTALLSN-V 152
           +NP  A  L   +L  G   +   L  VLK  A   S        +HA+S K  L  +  
Sbjct: 35  SNPGTAPPLAASLLRHGAPHDAGALRAVLKRLAATASAPCEAAPALHAHSAKLGLYRHHR 94

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V + L+ LY  CG       LF       A  D+VSWT ++  + ++    EA   F  
Sbjct: 95  GVRDALVALYLACGRRGVASDLFAGAGGGPAP-DVVSWTAMVTWHARLGLFREAAELFLA 153

Query: 213 MCQANLRPDGMILVIVLSACSKLG-DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
           M          +      A      +L L  ++HR + +    L  DV   NAL+DMY K
Sbjct: 154 MADDGAVVVDAVAAAAAFAACAGAGELVLAREVHRRVLEAGVAL--DVVACNALVDMYAK 211

Query: 272 CGNIPSARKVFDEM-PVKNVVSWNSMIAGLTHRGQFKEALDIFRRM---QGLGLKP--DD 325
           CG+  +A + F  M P KN+V+WN+MI+     G+ +EAL++FR M   QG    P  DD
Sbjct: 212 CGDSAAALRCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREMLQQQGCTSSPLPDD 271

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD-GFIGNALVDMYAKCGRIDQAFGVFR 384
            T V VL +CA +G L+ G+WVH Y+ +   +   G +GNAL+DMYAKCG ++QA  VF 
Sbjct: 272 ATFVAVLGACARLGALDAGRWVHAYIVRTGRDAAAGVVGNALIDMYAKCGAVEQAAEVFD 331

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
           +M  RDVY+YT+MI GLA+HG+  +AL +F +M Q  + P+EVTF+GVLSAC HAG +E+
Sbjct: 332 AMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPNEVTFLGVLSACCHAGNIED 391

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G +HF  M+ ++ + P  EHYGC+VD+ GRAG + EA +L+  MP+ PDA +WG+LL AC
Sbjct: 392 GLRHFDAMAELHGVTPGIEHYGCVVDMLGRAGRLDEAEELVSVMPIRPDAIIWGSLLAAC 451

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           + H  V+ AE VM  +   E +  G Y+LM+N+Y+ + R  +A+++R++M+  KV K PG
Sbjct: 452 RAHGHVDRAERVMRRMAEDEDDA-GDYVLMSNMYAQEGRHGKAVQVRRQMRRGKVDKVPG 510

Query: 565 CSLVEVYGEFYEFR 578
           CSL+E+ G  +EF+
Sbjct: 511 CSLIEIDGVVHEFQ 524


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 192/580 (33%), Positives = 319/580 (55%), Gaps = 24/580 (4%)

Query: 44  HAFIIKTGSPQHQTQI-----LYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLSNAN 97
           HA +IKTG+ +    +     +Y K   +    ++ +NL  +N  V+    +   + N+ 
Sbjct: 3   HAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWT-TLMTGYVQNSQ 61

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P  A+ ++ +ML  G  P+ +TL   L AC   +S+ +G+Q HA+ +K  +  +  + N 
Sbjct: 62  PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNA 121

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L  LY+  G + +  K F        ++D++SWTT+I A          +  F +M   N
Sbjct: 122 LCSLYSKFGSLDSSVKAFR----ETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFEN 177

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           + P+   L  VLS CS +    LG+++H   T        ++ I N+L+ +YLKCG I  
Sbjct: 178 VEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTK--LGHESNLRITNSLVYLYLKCGCIDE 235

Query: 278 ARKVFDEMPVKNVVSWNSMIAG-----------LTHRGQFKEALDIFRRMQGLGLKPDDF 326
           A+ +F+ M  KN+++WN+MIAG            + +    EAL ++ ++   G KPD F
Sbjct: 236 AKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLF 295

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           TL  +L  C+ +  LE G+ +H    K+   +D  +G ALVDMY KCG I++A   F  M
Sbjct: 296 TLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDM 355

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             R + S+T+MI   A HG++  AL +F +M   G  P+++TFVGVL+ACSHAG+V+E  
Sbjct: 356 STRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEAL 415

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           ++F  M + Y ++P  +HYGC+VD+F R G + EA D+IK M + P+ F+W  L+  C+ 
Sbjct: 416 EYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRN 475

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H   EL     E L++ +P     Y+++ N+Y S  RW++   +R+ MKE KV K    S
Sbjct: 476 HGNEELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWS 535

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            + + GE + F+  ++ H    E++ LL++++ ++K+ GY
Sbjct: 536 RISIKGEVHSFKTNNRLHNHNAELHTLLNDLVDRAKSLGY 575



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/392 (31%), Positives = 190/392 (48%), Gaps = 26/392 (6%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQI------LYDKIISLSRGNEIENLSLQNPQVYLY 86
           S +S+   KQFHAFIIK     H + I      LY K  SL    +    + +   +   
Sbjct: 93  SLESITLGKQFHAFIIKY-RISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWT 151

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
             I  C  N      + L+ EML + + PN +TL  VL  C   QS  +G QVH+ S K 
Sbjct: 152 TIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKL 211

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK-MDYP-- 203
              SN+ + N+L+ LY  CG I     LF+  ++    ++L++W  +I  + + MD    
Sbjct: 212 GHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEY----KNLITWNAMIAGHAQAMDLAKD 267

Query: 204 --------TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
                   TEA+  +  + ++  +PD   L  +L+ CS+L  L  G +IH     + F  
Sbjct: 268 NFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGF-- 325

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             DV +  AL+DMY KCG+I  ARK F +M  + ++SW SMI      GQ + AL +F  
Sbjct: 326 LSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFED 385

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCG 374
           M+  G +P+  T V VL +C++ G ++        + K + I         LVDM+ + G
Sbjct: 386 MRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLG 445

Query: 375 RIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
           R+D+AF V + M    + + +  +I G   HG
Sbjct: 446 RLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHG 477



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/469 (28%), Positives = 220/469 (46%), Gaps = 66/469 (14%)

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           VHA+ +KT      +V + L+ +YA CG++    K+F        +R++V WTTL+  YV
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVF----DNLPRRNVVVWTTLMTGYV 57

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +   P  A+  F DM ++   P    L I L+ACS L  ++LG + H +I    + +S D
Sbjct: 58  QNSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIK--YRISHD 115

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             I NAL  +Y K G++ S+ K F E   K+V+SW ++I+     G+    L +F  M  
Sbjct: 116 SSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLF 175

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
             ++P+DFTL  VL+ C+ I   +LG  VH+   K    ++  I N+LV +Y KCG ID+
Sbjct: 176 ENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDE 235

Query: 379 AFGVFRSMKCRDVYSYTAMIVG-----------LAIHGKAWKALDIFSEMSQVGIEPDEV 427
           A  +F  M+ +++ ++ AMI G            +      +AL ++ ++++ G +PD  
Sbjct: 236 AKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLF 295

Query: 428 TFVGVLSACS-----------HA------------------------GLVEEGCKHFLDM 452
           T   +L+ CS           HA                        G +E   K FLDM
Sbjct: 296 TLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDM 355

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV---PDAFVWGALLGACK---- 505
           S    +      +  M+  F R G  + AL L + M L    P+   +  +L AC     
Sbjct: 356 STRTLIS-----WTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGM 410

Query: 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
           +   +E  EI M+   + +P  D  Y  + +++    R  EA  + K+M
Sbjct: 411 VDEALEYFEI-MQKEYKIKPVMD-HYGCLVDMFVRLGRLDEAFDVIKRM 457


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 199/589 (33%), Positives = 318/589 (53%), Gaps = 53/589 (8%)

Query: 25  LHQSPRLESSKSVGQLKQFHAFIIKT---GSPQHQTQILYDKIISLSRGNEIEN---LSL 78
           LH        KS+  +KQ  A I KT     P    ++L    ++L           L +
Sbjct: 6   LHCLALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDI 65

Query: 79  QNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGL-LPNTYTLPYVLKACWQSQSLRVG 136
           +NP V++YN +I+ LS+++ P  A+ L+ EM  K + LP++++  ++LKA    ++L  G
Sbjct: 66  RNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNG 125

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            Q+H  ++   L S+++V  TL+ +YA C  +    K+F     P    ++V+W  ++ A
Sbjct: 126 LQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEP----NIVAWNAIVAA 181

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
             + +   +A   F  M   NL                                      
Sbjct: 182 CFRCEGVKDAEQVFRCMPIRNLTS------------------------------------ 205

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
                 N ++  Y K G +  AR+VF +MP+K+ VSW++MI G  H G F +A   FR +
Sbjct: 206 -----WNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREV 260

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +  G++P++ +L  VL++CA  G  E G+ +H +++K+       + NAL+D Y+KCG +
Sbjct: 261 RREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNL 320

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           D A  VF +M  R   S+TAMI G+A+HG   +A+ +F+EM +  I+PD +TF+ +L AC
Sbjct: 321 DMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYAC 380

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SHAGLV+ GC +F  M   Y ++P  EHYGCMVDL+GRAG +++A D +  MP+ P+  V
Sbjct: 381 SHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIV 440

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W  LLGAC IH  + LA  V   L   +PE  G ++L++NIY+   +WK+   LR+ M  
Sbjct: 441 WRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTH 500

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           +++KKTPG S++EV    Y F  G+K +   +E ++ L EIM + +  G
Sbjct: 501 QRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEG 549


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 187/520 (35%), Positives = 307/520 (59%), Gaps = 36/520 (6%)

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
           +Y L  +LK C    +L+   Q H + +   L  +  + +  +   +  G     H +F 
Sbjct: 41  SYHLLSLLKQC---SNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFT 97

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
            +  P    D+  + T+I+A    +  TEAIL +  +  ++LR D   L  VL A  +L 
Sbjct: 98  HKTRP----DIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLL 153

Query: 237 DLSLGIKIH------RYITDNHFNLS-----------------------PDVFIHNALID 267
            + +G +IH        ++D H   +                        DV   NA++ 
Sbjct: 154 AIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVA 213

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
            Y K G++ +AR +F+ MP +NV+SW ++IAG     +  EA+ +FRRMQ   ++PD+  
Sbjct: 214 GYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIA 273

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           ++  L++CA++G LELG+W+H Y+DK+ ++    + NAL+DMYAKCG+I++A  VF++M+
Sbjct: 274 MLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNME 333

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            + V ++T+MI GLA+HG   +AL++FS M +  I+P+E+TFV +LSAC H GLVE G  
Sbjct: 334 HKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRW 393

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           +F  M   Y ++P+ +HYGCM+DL GRAG ++EA +L++ MP   +A +WG+LL A +IH
Sbjct: 394 YFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIH 453

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
              EL +  +++L++ EP   G Y L++NIY+++++W EA  +RK M++  VKK PG S 
Sbjct: 454 GDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSC 513

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +EV    +EF  GDK HP++  I+++L +J  QSK   Y+
Sbjct: 514 IEVNNRVHEFVAGDKLHPQSERIFEVLCKJNLQSKIAMYV 553



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 218/432 (50%), Gaps = 58/432 (13%)

Query: 18  TFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS 77
           ++  LSLL Q   L+       L Q H F++  G  Q    IL  + I         + S
Sbjct: 41  SYHLLSLLKQCSNLK------HLHQTHCFMLSRGLDQ--DNILLSRFIEACSSLGFSHYS 92

Query: 78  LQ------NPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQS 130
                    P +YLYN II+ LSN     EAI LY  +L   L  +TY+LP+VLKA  + 
Sbjct: 93  HSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRL 152

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-------------- 176
            ++ VG+Q+H  ++ T L+S+++V   L+++Y+ CG +    +LF               
Sbjct: 153 LAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMV 212

Query: 177 ---------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221
                          F + P  +R+++SWT +I  Y +MD P EAI  F  M    + PD
Sbjct: 213 AGYAKVGDVDNARHLFERMP--ERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPD 270

Query: 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
            + ++  LSAC+ LG L LG  IH YI D H  LS  V ++NALIDMY KCG I  A +V
Sbjct: 271 EIAMLAALSACAHLGALELGEWIHNYI-DKH-GLSKIVPLNNALIDMYAKCGKIEKALEV 328

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           F  M  K+V++W SMI GL   G  +EAL++F  M+   +KP++ T V +L++C ++G +
Sbjct: 329 FKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLV 388

Query: 342 ELGKWVH-----TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYT 395
           E+G+W        Y  K  I   G     ++D+  + G + +A  + R M    +   + 
Sbjct: 389 EMGRWYFKCMGTKYGIKPKIQHYG----CMIDLLGRAGFLQEAQELVRGMPFEANAPIWG 444

Query: 396 AMIVGLAIHGKA 407
           +++    IHG A
Sbjct: 445 SLLAAARIHGDA 456


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 188/508 (37%), Positives = 286/508 (56%), Gaps = 6/508 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E++ L+  M I G  PN +T   VLKAC   +   VG+ VH  + KT+ L  ++V   L+
Sbjct: 229 ESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELI 288

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY   G +    ++F        + D++ W+ +I  Y + +   EAI  F  M +  + 
Sbjct: 289 DLYIKSGDVDDALQVFE----EMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVL 344

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+   L  +L AC+ L DL LG +IH ++      L  +VF+ NAL+DMY KCG + ++ 
Sbjct: 345 PNQFTLASLLQACASLVDLQLGNQIHCHVV--KVGLDMNVFVSNALMDMYAKCGRMENSL 402

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++F E P    VSWN++I G    G  ++AL +F+ M    ++  + T   VL +CA I 
Sbjct: 403 QLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIA 462

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            LE G  +H+   K   + +  +GNAL+DMYAKCG I  A  VF  ++  D  S+ AMI 
Sbjct: 463 ALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMIS 522

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G ++HG   +AL  F  M +   +PD+VTFVG+LSACS+AGL++ G  +F  M   Y+++
Sbjct: 523 GYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIE 582

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  EHY CMV L GR+G + +A  L+  +P  P   VW ALL AC IH  VEL  I  + 
Sbjct: 583 PCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQR 642

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           ++  EPE +  ++L++NIY++  RW     +R  MK + ++K PG S +E  G  + F  
Sbjct: 643 VLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSV 702

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GD SHP T  I  +L+ +  +++N GY+
Sbjct: 703 GDTSHPDTKLINGMLEWLNMKARNEGYV 730



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 150/524 (28%), Positives = 257/524 (49%), Gaps = 26/524 (4%)

Query: 15  DINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGS--PQHQTQILYDKIISLSRGNE 72
           + NT+   SLL    R   +      K  H  IIK G+        IL +  +      +
Sbjct: 41  EFNTYIYGSLLQSCIR---NGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPD 97

Query: 73  IENLSLQNPQVYLYNFII------QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKA 126
              L  + P     +F+       QCL  +   EAI L+  +  +G   N +    VLK 
Sbjct: 98  AAKLFDEMPDRNTVSFVTLIQGYSQCLRFS---EAIGLFSRLQGEGHELNPFVFSTVLKL 154

Query: 127 CWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRD 186
              ++  ++G  VHA   K    S+ +V   L+  Y+VCG  +   ++F   ++    +D
Sbjct: 155 LVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEY----KD 210

Query: 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
           +VSWT ++  YV+ +   E++  F  M     +P+      VL AC  L   ++G  +H 
Sbjct: 211 MVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHG 270

Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
                 +    ++F+   LID+Y+K G++  A +VF+EMP  +V+ W+ MIA      Q 
Sbjct: 271 CAFKTSY--LEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQS 328

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
           +EA+++F RM+   + P+ FTL  +L +CA++  L+LG  +H ++ K  ++ + F+ NAL
Sbjct: 329 EEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNAL 388

Query: 367 VDMYAKCGRIDQAFGVF-RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           +DMYAKCGR++ +  +F  S  C DV S+  +IVG    G   KAL +F +M +  ++  
Sbjct: 389 MDMYAKCGRMENSLQLFSESPNCTDV-SWNTVIVGYVQAGNGEKALILFKDMLECQVQGT 447

Query: 426 EVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           EVT+  VL AC+    +E G + H L +  +Y+    T     ++D++ + G I++A  L
Sbjct: 448 EVTYSSVLRACAGIAALEPGSQIHSLSVKTIYD--KNTVVGNALIDMYAKCGNIKDA-RL 504

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
           +  M    D   W A++    +H     A    E+++  E + D
Sbjct: 505 VFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPD 548



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 122/265 (46%), Gaps = 13/265 (4%)

Query: 42  QFHAFIIKTGSPQHQ--TQILYDKIISLSRGNEIENLSLQNPQ---VYLYNFIIQCLSNA 96
           Q H  ++K G   +   +  L D      R      L  ++P    V     I+  +   
Sbjct: 368 QIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAG 427

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           N  +A+ L+++ML   +     T   VL+AC    +L  G Q+H+ S+KT    N  V N
Sbjct: 428 NGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGN 487

Query: 157 TLMRLYAVCGLIKAVHKLFH-FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
            L+ +YA CG IK    +F   R+H Q     VSW  +I  Y       EA+ +F  M +
Sbjct: 488 ALIDMYAKCGNIKDARLVFDMLREHDQ-----VSWNAMISGYSVHGLYGEALKTFESMLE 542

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
              +PD +  V +LSACS  G L  G    + + +  +++ P    +  ++ +  + G++
Sbjct: 543 TECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVE-EYDIEPCAEHYTCMVWLLGRSGHL 601

Query: 276 PSARKVFDEMPVK-NVVSWNSMIAG 299
             A K+  E+P + +V+ W ++++ 
Sbjct: 602 DKAAKLVHEIPFEPSVMVWRALLSA 626


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 198/569 (34%), Positives = 312/569 (54%), Gaps = 51/569 (8%)

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           +N I+   +   + + A+ ++  M    G+ P+  +L  VL AC    +   G+QVH Y+
Sbjct: 217 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 276

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHK------------------------------ 173
           +++ L  +V+V N ++ +YA CG+++  +K                              
Sbjct: 277 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDAL 336

Query: 174 -LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
            LF   +  + + ++V+W+ +I  Y +     EA+  F  M      P+ + LV +LS C
Sbjct: 337 GLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGC 396

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSP-----DVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +  G L  G + H +      NL       D+ + NALIDMY KC +  +AR +FD +P 
Sbjct: 397 ASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPP 456

Query: 288 KN--VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF------TLVCVLNSCANIG 339
           K+  VV+W  +I G    G+  EAL++F +M    L+PD+F      T+ C L +CA +G
Sbjct: 457 KDRSVVTWTVLIGGNAQHGEANEALELFSQM----LQPDNFVMPNAFTISCALMACARLG 512

Query: 340 WLELGKWVHTYLDKNHINTDG-FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
            L  G+ +H Y+ +N   +   F+ N L+DMY+K G +D A  VF +M  R+  S+T+++
Sbjct: 513 ALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLM 572

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G  +HG+  +AL IF EM +V + PD VTFV VL ACSH+G+V++G  +F  M++ + +
Sbjct: 573 TGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGV 632

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P  EHY CMVDL  RAG + EA++LI+ MP+ P   VW ALL AC+++A VEL E    
Sbjct: 633 VPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAAN 692

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            L+  E   DG+Y L++NIY++   WK+  ++R  MK   +KK PGCS V+       F 
Sbjct: 693 QLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFF 752

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            GD SHP + +IY LL ++M + K  GY+
Sbjct: 753 AGDWSHPMSQQIYDLLRDLMQRIKALGYV 781



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 169/547 (30%), Positives = 261/547 (47%), Gaps = 71/547 (12%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQ 82
           +L HQ       KS+   +  H  ++  G P   T I+   +   S    +  L   +P 
Sbjct: 53  TLFHQC------KSLASAELTHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPS 106

Query: 83  ---VYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
              V+ +N +I+   +   LE  + LYR M   G  P+ YT P+VLKAC +  S R G  
Sbjct: 107 SHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGAS 166

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           VHA    +    NV+V N L+ +Y  CG  +   ++F      +   DLVSW +++ AY+
Sbjct: 167 VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFD-EMRERGVGDLVSWNSIVAAYM 225

Query: 199 KMDYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           +      A+  F  M +   +RPD + LV VL AC+ +G  S G ++H Y   +   L  
Sbjct: 226 QGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS--GLFE 283

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK---------- 307
           DVF+ NA++DMY KCG +  A KVF+ M VK+VVSWN+M+ G +  G+F           
Sbjct: 284 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIR 343

Query: 308 -------------------------EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
                                    EALD+FR+M   G +P+  TLV +L+ CA+ G L 
Sbjct: 344 EEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLL 403

Query: 343 LGKWVHTY-------LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--KCRDVYS 393
            GK  H +       LD+N    D  + NAL+DMY+KC     A  +F  +  K R V +
Sbjct: 404 HGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVT 463

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVG--IEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
           +T +I G A HG+A +AL++FS+M Q    + P+  T    L AC+  G +      F  
Sbjct: 464 WTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR-----FGR 518

Query: 452 MSRVYNLQPQTEH-----YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
               Y L+ + E        C++D++ ++G +  A  +  +M    +   W +L+    +
Sbjct: 519 QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQ-RNGVSWTSLMTGYGM 577

Query: 507 HAKVELA 513
           H + E A
Sbjct: 578 HGRGEEA 584


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 191/538 (35%), Positives = 307/538 (57%), Gaps = 55/538 (10%)

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL--IKAV 171
           LP+   L  + + C   Q +   +Q+HA+S+KTA+ ++ +V + L+ LY+   +  +   
Sbjct: 14  LPHNLHLS-LFQTCSAPQEV---EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYA 69

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
             +F   Q    +R L+ W T+I+ YV+  +  + I+ F ++    L PD   L  V+  
Sbjct: 70  RSIFDRIQ----RRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKG 124

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD-------- 283
           C++LG +  G +IH       F    DVF+  +L++MY KCG I  ARKVFD        
Sbjct: 125 CARLGVVQEGKQIHGLALKIGF--GSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVV 182

Query: 284 ----------------------------------EMPVKNVVSWNSMIAGLTHRGQFKEA 309
                                             +MP+ ++V+WN MIAG    GQF +A
Sbjct: 183 LWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDA 242

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           + +F  M  LG +P   TLV VL++ + +  L  G+W+H+Y++KN    DG +G +L++M
Sbjct: 243 VKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEM 302

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           YAKCG I+ A  VFR+++ + V  +TA+IVGL IHG A  AL +F EM + G++P+ + F
Sbjct: 303 YAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIF 362

Query: 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
           +GVL+AC+HAGLV++G ++F  M   Y ++P  EHYGC+VD+  RAG + EA + I++MP
Sbjct: 363 IGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMP 422

Query: 490 LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549
           + P+  +W +LLG  + H K+++ E   + ++   PE  G YIL++N+Y++   W++   
Sbjct: 423 ISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSH 482

Query: 550 LRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +R+ M +R  +K PGCS VE  G  +EF  GD SHP+T EIY  + E+  + K  G++
Sbjct: 483 VREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHV 540



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 135/488 (27%), Positives = 215/488 (44%), Gaps = 69/488 (14%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQVYLYNFII 90
           +++Q HAF +KT    H    +  ++++L    +I +L         +Q   +  +N II
Sbjct: 31  EVEQLHAFSLKTAIFNHP--FVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTII 88

Query: 91  QC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           +C + N    + I L+ E L+   LP+ +TLP V+K C +   ++ G+Q+H  ++K    
Sbjct: 89  KCYVENQFSHDGIVLFHE-LVHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 147

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFH--------------------------------- 176
           S+V+V  +L+ +Y+ CG I    K+F                                  
Sbjct: 148 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGD 207

Query: 177 -------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
                  F Q P    DLV+W  +I  Y       +A+  FF M +   RP    LV VL
Sbjct: 208 FDSALELFYQMPIW--DLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVL 265

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           SA S L  L  G  IH Y+  N F L  D  +  +LI+MY KCG I SA  VF  +  K 
Sbjct: 266 SAVSGLAVLGKGRWIHSYMEKNGFEL--DGILGTSLIEMYAKCGCIESALTVFRAIQKKK 323

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK-WVH 348
           V  W ++I GL   G    AL +F  M   GLKP+    + VLN+C + G ++ G+ +  
Sbjct: 324 VGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFD 383

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKA 407
             +++  I         LVD+  + G +++A     +M    +   + +++ G   HGK 
Sbjct: 384 MMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGK- 442

Query: 408 WKALDIFSEMSQVGIE--PDEVTFVGVLSACSHAGLVEEGCKHFLDM--SRVYNLQP--- 460
              +DI    +Q  IE  P+ +    +LS    A  + E   H  +M   R +   P   
Sbjct: 443 ---IDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCS 499

Query: 461 QTEHYGCM 468
             EH G +
Sbjct: 500 SVEHKGTL 507


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 188/526 (35%), Positives = 300/526 (57%), Gaps = 54/526 (10%)

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL----IKAVHKLFHFRQHPQAQRD 186
           +++R   Q+HA  +K+  + +      ++R  A   L    +   HK+F+  Q PQ  R+
Sbjct: 34  RTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFN--QMPQ--RN 89

Query: 187 LVSWTTLIQAYVKMDYPTE--AILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIK 243
             SW T+I+ + + D      AI  F++M     + P+      VL AC+K G +  G +
Sbjct: 90  CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149

Query: 244 IH-----------RYITDNHFNL--------------------------------SPDVF 260
           IH            ++  N   +                                  ++ 
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIV 209

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           + N +ID Y++ G+  +AR +FD+M  ++VVSWN+MI+G +  G FK+A+++FR M+   
Sbjct: 210 LWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD 269

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           ++P+  TLV VL + + +G LELG+W+H Y + + I  D  +G+AL+DMY+KCG I++A 
Sbjct: 270 IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAI 329

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  +   +V +++AMI G AIHG+A  A+D F +M Q G+ P +V ++ +L+ACSH G
Sbjct: 330 HVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGG 389

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LVEEG ++F  M  V  L+P+ EHYGCMVDL GR+GL+ EA + I +MP+ PD  +W AL
Sbjct: 390 LVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKAL 449

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           LGAC++   VE+ + V   L+   P   GAY+ ++N+Y+S+  W E  ++R +MKE+ ++
Sbjct: 450 LGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIR 509

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           K PGCSL+++ G  +EF   D SHPK  EI  +L EI  + +  GY
Sbjct: 510 KDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGY 555



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 220/477 (46%), Gaps = 102/477 (21%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL--------QN 80
           P++ + +++  L Q HA  IK+G  Q +  +   +I+     +++ +  L        Q 
Sbjct: 28  PQINNCRTIRDLSQIHAVFIKSG--QMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQM 85

Query: 81  PQ--VYLYNFIIQCLSNAN---PLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLR 134
           PQ   + +N II+  S ++    L AI L+ EM+    + PN +T P VLKAC ++  ++
Sbjct: 86  PQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQ 145

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF------------RQHPQ 182
            G+Q+H  ++K     + +V + L+R+Y +CG +K    LF+             R+   
Sbjct: 146 EGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRD 205

Query: 183 A-----------------------------QRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
                                         QR +VSW T+I  Y    +  +A+  F +M
Sbjct: 206 GEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM 265

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
            + ++RP+ + LV VL A S+LG L LG  +H Y  D+   +  D  + +ALIDMY KCG
Sbjct: 266 KKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRI--DDVLGSALIDMYSKCG 323

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
            I  A  VF+ +P +NV++W++MI G    GQ  +A+D F +M+  G++P D   + +L 
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIG-----NALVDMYAKCGRIDQAFGVFRSMKC 388
           +C++ G +E G+   + +    ++ DG          +VD+  + G +D+A     +M  
Sbjct: 384 ACSHGGLVEEGRRYFSQM----VSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMP- 438

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
                                            I+PD+V +  +L AC   G VE G
Sbjct: 439 ---------------------------------IKPDDVIWKALLGACRMQGNVEMG 462



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 46/295 (15%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ ++REM    + PN  TL  VL A  +  SL +G+ +H Y+  + +  +  + + L+
Sbjct: 257 DAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALI 316

Query: 160 RLYAVCGLI-KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
            +Y+ CG+I KA+H    F + P  + ++++W+ +I  +       +AI  F  M QA +
Sbjct: 317 DMYSKCGIIEKAIHV---FERLP--RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV 371

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITD--NHFNLSPDVFIHNALIDMYLKCGNIP 276
           RP  +  + +L+ACS  G +  G    RY +   +   L P +  +  ++D+  + G + 
Sbjct: 372 RPSDVAYINLLTACSHGGLVEEG---RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLD 428

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A +    MP+                                  KPDD     +L +C 
Sbjct: 429 EAEEFILNMPI----------------------------------KPDDVIWKALLGACR 454

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
             G +E+GK V   L  + +  D     AL +MYA  G   +   +   MK +D+
Sbjct: 455 MQGNVEMGKRVANIL-MDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDI 508


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 218/668 (32%), Positives = 334/668 (50%), Gaps = 111/668 (16%)

Query: 39  QLKQFHAFIIKTGSPQHQ--TQILYDKIISLSRGNEIENL---SLQNPQVYLYNFIIQCL 93
            L+Q HA II      H     +L +    L       +L   S  NP V+++  +++  
Sbjct: 16  HLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFY 75

Query: 94  SN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           S+  +  + + ++  M   G+ P+ +  P ++K+         G   HA+ +K    S+ 
Sbjct: 76  SHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNG-----GIGFHAHVLKLGHGSDA 130

Query: 153 YVFNTLMRLYAVCGLIKAVHKL---------------------FHFRQHPQAQ------- 184
           +V N ++ +YA  G I    K+                     + +    QAQ       
Sbjct: 131 FVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP 190

Query: 185 -RDLVSWTTLIQAYVKM------------------------------DYPTEAILSFFD- 212
            R++++WT ++  Y K+                              +   E +L  FD 
Sbjct: 191 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDE 250

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M  A + PD    V V+SACS  GD  L   + R +      L  + F+  AL+DMY KC
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQL--NCFVRTALLDMYAKC 308

Query: 273 GNIPSARKVFDE--------------------------------MPVKNVVSWNSMIAGL 300
           G+I +AR++FDE                                MP +NVV+WNSMIAG 
Sbjct: 309 GSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGY 368

Query: 301 THRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
              GQ   A+++F+ M     L PD+ T+V V+++C ++G LELG WV  +L +N I   
Sbjct: 369 AQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLS 428

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
               NA++ MY++CG ++ A  VF+ M  RDV SY  +I G A HG   +A+++ S M +
Sbjct: 429 ISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKE 488

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            GIEPD VTF+GVL+ACSHAGL+EEG K F  +       P  +HY CMVDL GR G + 
Sbjct: 489 GGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELE 543

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           +A   ++ MP+ P A V+G+LL A +IH +VEL E+    L   EP+  G +IL++NIY+
Sbjct: 544 DAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYA 603

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
           S  RWK+  ++R+ MK+  VKKT G S VE  G+ ++F   D+SH ++ +IY+LL E+  
Sbjct: 604 SAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRK 663

Query: 600 QSKNHGYI 607
           + +  GYI
Sbjct: 664 KMREAGYI 671


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 219/603 (36%), Positives = 338/603 (56%), Gaps = 50/603 (8%)

Query: 8   ASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL 67
            S   +N I+T   +S L Q P L + ++V  L  F        S QH         +SL
Sbjct: 70  GSTKEFNQIHTQLIVSGLLQQP-LAAGRAVKTLCSF------PDSVQHA--------VSL 114

Query: 68  SRGNEIENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLI-KGLLPNTYTLPYVLK 125
             G       L+ P  ++ N I++   N N P  A+  Y E ++ K + PN YT P ++K
Sbjct: 115 FEG-------LEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVK 167

Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
            CW+  S+  G+++HA  +K     +++V N+L+ +Y+VCG I     +F       +  
Sbjct: 168 VCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEV----CSIS 223

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP-DGMILVIVLSACSKLGDLSLGIKI 244
           DLV+W ++I  YVK      A   F +M + +L   + MI   V +     GD++     
Sbjct: 224 DLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGN-----GDMT----- 273

Query: 245 HRYITDNHFNLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
                ++ FN  P  D+   N +ID Y +  N+  A ++F+ MP +NVVSWN M+A    
Sbjct: 274 ---AAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVR 330

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGF 361
              + E L +F +M G  + P++ TLV VL +CA++G L+ GKW+H+Y+  N  I  D  
Sbjct: 331 IKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVL 389

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           +  AL+ MYAKCG +D A  VF  M  R V S+ +MI+G  +HG+A KAL++F +M + G
Sbjct: 390 LSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRG 449

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
             P++ TF+ VLSAC+H+G++ EG  +F  M R Y ++P+ EHYGCMVDL GRAGL+++ 
Sbjct: 450 PMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDL 509

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
            +LI+ MP+     +WGALL AC+ H+  ELAEIV + L+  EP   G Y+L++NIY+++
Sbjct: 510 EELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAE 569

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF--YEFRKGDKSHPKTLEIYKLLDEIMH 599
            +W +   +RK MKER + KT G S V +  EF    F +    H K++ +Y +L ++  
Sbjct: 570 GKWDDVEIVRKMMKERGLTKTTGFSWVHIE-EFGTQSFVEKASVHRKSM-MYSILSDMAT 627

Query: 600 QSK 602
           Q K
Sbjct: 628 QMK 630


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 179/536 (33%), Positives = 310/536 (57%), Gaps = 38/536 (7%)

Query: 104 LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYA 163
            +R +  + ++PN+ T+  V+ AC + + L  G++V+ +   + +  N  + + L+ +Y 
Sbjct: 222 FFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYM 281

Query: 164 VCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM 223
            C  I    +LF   ++  +  DL +   +   YV+     EA+     M  + +RPD +
Sbjct: 282 KCNAIDIAKRLFD--EYGASNLDLCN--AMASNYVRQGLTKEALGVLNLMMDSGIRPDRI 337

Query: 224 ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC----------- 272
            ++  +S+CS+L ++  G   H Y+  N F    +  I NALIDMY+KC           
Sbjct: 338 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDN--ICNALIDMYMKCHRQDTAFRIFD 395

Query: 273 --------------------GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
                               G + +A + F+ MP KN+VSWN++I+ L     ++EA+++
Sbjct: 396 RMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEV 455

Query: 313 FRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           F  MQ    +  D  T++ + ++C ++G L+L KW++ Y++KN I  D  +G  LVDM++
Sbjct: 456 FHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFS 515

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           +CG  + A  +F S+  RDV ++TA I  +A+ G   +A+++F+EM + G++PD V F+G
Sbjct: 516 RCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIG 575

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
            L+AC H GLV++G + F  M +++ + P+  HYGCMVDL GRAGL+ EAL LIK MP  
Sbjct: 576 ALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTE 635

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P+  +W +LL AC++   VE+A    E +    PE  G+Y+L++N+Y+S  RW +  K+R
Sbjct: 636 PNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVR 695

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             MKE+ ++K PG S++++ G+ +EF  GD+SHP+  +I  +LDE+  ++ + G++
Sbjct: 696 LSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHV 751



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 172/622 (27%), Positives = 293/622 (47%), Gaps = 102/622 (16%)

Query: 23  SLLHQSPR-------LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII---------- 65
           SL +QS R       L++ K++ +LK FH  + K G     + I   K++          
Sbjct: 23  SLPNQSKRTKATPSSLKNCKTIDELKMFHLSLTKQGLDDDVSAIT--KLVARSCELGTRE 80

Query: 66  SLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVL 124
           SLS   E+          ++YN +I+  +++    EAI L+  M+  G+ P+ YT P+ L
Sbjct: 81  SLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGL 140

Query: 125 KACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ 184
             C +S+    G Q+H   +K     +++V N+L+  YA CG +    K+F       ++
Sbjct: 141 SVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVF----DEMSE 196

Query: 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIK 243
           R++VSWT++I  Y + ++  +A+  FF M +  ++ P+ + +V V+SAC+KL DL  G K
Sbjct: 197 RNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEK 256

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303
           ++ +I D+   ++ D+ I +AL+DMY+KC  I  A+++FDE    N+   N+M +    +
Sbjct: 257 VYDFIRDSGIEVN-DLMI-SALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQ 314

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
           G  KEAL +   M   G++PD  +++  ++SC+ +  +  GK  H Y+ +N   +   I 
Sbjct: 315 GLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNIC 374

Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK---AW------------ 408
           NAL+DMY KC R D AF +F  M  + V ++ +++ G   +G+   AW            
Sbjct: 375 NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIV 434

Query: 409 ----------------KALDIFSEM-SQVGIEPDEVTFVGVLSACSHAGLVE--EGCKHF 449
                           +A+++F  M SQ  +  D VT + + SAC H G ++  +   ++
Sbjct: 435 SWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYY 494

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP-------------------- 489
           ++ +R+   Q        +VD+F R G    A+ +  S+                     
Sbjct: 495 IEKNRI---QLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNV 551

Query: 490 --------------LVPDAFVW-GALLGACKIHAKVELAEIV--MENLVRFEPEGDGAYI 532
                         L PD  V+ GAL   C      +  EI   ME L    PE D  Y 
Sbjct: 552 ERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPE-DVHYG 610

Query: 533 LMTNIYSSKNRWKEALKLRKKM 554
            M ++       +EAL+L K M
Sbjct: 611 CMVDLLGRAGLLEEALQLIKDM 632



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 162/333 (48%), Gaps = 10/333 (3%)

Query: 111 KGLLPN----TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
           K  LPN    T   P  LK C     L++    H    K  L  +V     L+      G
Sbjct: 21  KPSLPNQSKRTKATPSSLKNCKTIDELKM---FHLSLTKQGLDDDVSAITKLVARSCELG 77

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
             +++       ++ ++      + +LI+ Y       EAIL F  M  + + PD     
Sbjct: 78  TRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFP 137

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
             LS C+K  D   GI+IH  I     + + D+F+ N+L+  Y +CG +  ARKVFDEM 
Sbjct: 138 FGLSVCAKSRDKGNGIQIHGLII--KMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMS 195

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGK 345
            +NVVSW SMI G   R   K+A+D+F RM +   + P+  T+VCV+++CA +  LE G+
Sbjct: 196 ERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGE 255

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            V+ ++  + I  +  + +ALVDMY KC  ID A  +F      ++    AM       G
Sbjct: 256 KVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQG 315

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
              +AL + + M   GI PD ++ +  +S+CS 
Sbjct: 316 LTKEALGVLNLMMDSGIRPDRISMLSAISSCSQ 348


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 182/487 (37%), Positives = 288/487 (59%), Gaps = 28/487 (5%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV--CGLIKAVHKLFHFRQ 179
           ++L+ C   + LR   Q+H   +KT L+ +    + L+   A    G +     +F    
Sbjct: 23  HLLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIF 79

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
            P    +   W T+I+ Y     P EA+L +  M   ++  +      +L ACS +  L 
Sbjct: 80  RP----NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALE 135

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
              +IH +I    F    +++  N+L+++Y K G+I SAR +FD++  ++          
Sbjct: 136 ETQQIHAHIIKMGFG--SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT--------- 184

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
                   EAL++F RMQ  G+K D+  LV  L +CA++G L+ GKW+H Y+ K+ I  D
Sbjct: 185 --------EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEID 236

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             +G  L+DMYAKCG +++A  VFR M+ + V  +TAMI G AIHG+  +AL+ F +M  
Sbjct: 237 PILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQT 296

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G+EP+++TF G+L+ACSHAGLV E    F  M R++  +P  EHYGCMVDL GRAGL++
Sbjct: 297 AGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLK 356

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA +LI++MP+ P+A +WGALL AC IH  +EL + + + L++ +P   G YI + +I++
Sbjct: 357 EAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHA 416

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
           +   W +A ++R++MKE+ V K PGCS++ V G  +EF  GD+SHP+  EI  +L++I+ 
Sbjct: 417 AAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVE 476

Query: 600 QSKNHGY 606
           + +  GY
Sbjct: 477 RLREEGY 483



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/440 (28%), Positives = 211/440 (47%), Gaps = 54/440 (12%)

Query: 1   MASPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL 60
           MA  L   +    ++ N  Q L LL +   +E      +L+Q H  ++KTG      +I 
Sbjct: 1   MAPILCTPTSQLSSESNAAQTLHLLQRCSNME------ELRQIHGQMLKTGLIL--DEIP 52

Query: 61  YDKIISLSRGNEIENLS--------LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIK 111
             K+++        +L+        +  P  +++N +I+  SN+  P EA+ LY  ML  
Sbjct: 53  ASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYH 112

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
            +  N YT P++LKAC    +L   QQ+HA+ +K    S +Y  N+L+ +Y+  G IK+ 
Sbjct: 113 SVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSA 172

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
             LF        QRD                 TEA+  F  M  A ++ D + LV  L A
Sbjct: 173 RLLF----DQVDQRD-----------------TEALNLFHRMQTAGIKLDNVALVSTLQA 211

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           C+ LG L  G  IH YI  +   + P   +   LIDMY KCG++  A +VF +M  K V 
Sbjct: 212 CADLGVLDQGKWIHAYIKKHEIEIDP--ILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVS 269

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
            W +MI+G    G+ +EAL+ F +MQ  G++P+  T   +L +C++ G +   K +   +
Sbjct: 270 VWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESM 329

Query: 352 DKNHINTDGFIGN-----ALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
           ++ H    GF  +      +VD+  + G + +A  +  +M  + +   + A++    IHG
Sbjct: 330 ERIH----GFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 385

Query: 406 KAWKALDIFSEMSQVGIEPD 425
                L++  ++ ++ I+ D
Sbjct: 386 N----LELGKQIGKILIQVD 401


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 165/417 (39%), Positives = 255/417 (61%), Gaps = 2/417 (0%)

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
            ++I+ Y   +    ++  +  M +  + PD      VL + ++L    LG  IH  I  
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
             F    +V++  AL++MY  C ++  AR+VFDE+P +N+VSWN++I G  H   F++ +
Sbjct: 171 MGF--ESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVI 228

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           D+FR MQ  G KP + T+V VL +CA++G L  G+W+  Y+D N +  + F+G AL+DMY
Sbjct: 229 DVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMY 288

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           AKCG +D+A  +F++M+ ++VY++  +I G A++G+   AL  FS M     +PDEVTF+
Sbjct: 289 AKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFL 348

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
           GVL AC H GLV EG  +F  M   + L+P+ EHYGCMVDL GRAG + EA  LI++M +
Sbjct: 349 GVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSM 408

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            PD  +W  LLGAC+IH  ++L E  ++ L+  EP     Y+L+ N+Y+   RW +  ++
Sbjct: 409 QPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEV 468

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R+ M  R+V+K PGCS +E+    YEF   +   P   E+YKLL ++  + K  GY+
Sbjct: 469 REMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYV 525



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 191/409 (46%), Gaps = 54/409 (13%)

Query: 85  LYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           L N +I+C +++N  L ++ +Y +M   G+ P++ T P VLK+  Q     +G+ +H   
Sbjct: 109 LCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCI 168

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           ++    SNVYV   L+ +Y  C  +    ++F         R++VSW  LI  Y      
Sbjct: 169 IQMGFESNVYVSTALVNMYGTCSSVSDARQVF----DEIPDRNIVSWNALITGYNHNRMF 224

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            + I  F +M  A  +P  + +V VL AC+ LG L+ G  I  YI  N   L  +VF+  
Sbjct: 225 RKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRL--NVFVGT 282

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           ALIDMY KCG +  A K+F  M VKNV +WN +I+G    G+ + AL  F RM     KP
Sbjct: 283 ALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKP 342

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCGRIDQAFG 381
           D+ T + VL +C + G +  G+   T + K        I +   +VD+  + G +D+A  
Sbjct: 343 DEVTFLGVLCACCHQGLVNEGRTYFTSM-KEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQ 401

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           + ++M                                   ++PD + +  +L AC   G 
Sbjct: 402 LIQAM----------------------------------SMQPDPIIWRELLGACRIHGN 427

Query: 442 VEEGCKHFLDMSRVYNLQPQT-EHYGCMVDLFGR------AGLIREALD 483
           ++ G      + ++  L+P   E+Y  + +L+ R       G +RE +D
Sbjct: 428 IQLG---EFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMD 473


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 186/511 (36%), Positives = 301/511 (58%), Gaps = 19/511 (3%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ--------QVHAYSMKT 146
           N    E + ++ +M+ + + P++ T+  V +AC +  SLR+G+         VH + ++ 
Sbjct: 469 NGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRR 528

Query: 147 ALLSNV-YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
           A+   + ++   LM LYA  G ++  HK+F   +    ++ ++SW TLI  + +   P E
Sbjct: 529 AMDPELDFLGPALMELYADTGNLRDCHKVFETIK----EKTILSWNTLISIFTRNGQPEE 584

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN-HFNLSPDVFIHNA 264
           A+L F  M    L PD   L   LSAC  +    LG +IH YI    +FN     F+ NA
Sbjct: 585 ALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFN----DFVQNA 640

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LIDMY KCG + SA K+F+++  K++V+WNSMI G +  G   EA+ +F +M    +K D
Sbjct: 641 LIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMD 700

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             T + V+ +C+++G+LE GKWVH  L    +  D ++  AL DMY+KCG +  A GVF 
Sbjct: 701 KLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFD 760

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            M  R + S++ MI G  +HG+    + +F++M   GI+P+++TF+ +LSACSHAG VEE
Sbjct: 761 RMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEE 820

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G  +F  MS  + ++P+ +H+ CMVDL  RAG +  A  +I S+P   ++ +WGALL  C
Sbjct: 821 GKLYFNSMSE-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGC 879

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           +IH ++++ + + +NL+  +    G Y L++NIY+ +  W +  K+R  MK + ++K PG
Sbjct: 880 RIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPG 939

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
            S +E+  + Y F  GD SH +T +IY+ L+
Sbjct: 940 YSTIEIDKKIYRFGPGDTSHSQTKDIYRFLE 970



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 205/444 (46%), Gaps = 74/444 (16%)

Query: 125 KACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ 184
           K C  S +L    Q+HA+   T L  +      L+  YA  G+ ++  ++F     P   
Sbjct: 356 KRCATSTTL---TQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKP--- 409

Query: 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIK 243
            D   W  LI+ YV   +  EA+  + +M  Q   +    +   VL ACS  GDLS+G K
Sbjct: 410 -DSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGK 468

Query: 244 ----------------------------------------------------IHRYITDN 251
                                                               +H ++   
Sbjct: 469 NGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRR 528

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
             +   D F+  AL+++Y   GN+    KVF+ +  K ++SWN++I+  T  GQ +EAL 
Sbjct: 529 AMDPELD-FLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALL 587

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           +F +MQ  GL PD ++L   L++C  I + +LG  +H Y+ K   N + F+ NAL+DMYA
Sbjct: 588 LFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYA 646

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           KCG +  A  +F  +K + + ++ +MI G + +G + +A+ +F +M    ++ D++TF+ 
Sbjct: 647 KCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLS 706

Query: 432 VLSACSHAGLVEEG--CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA---LDLIK 486
           V+ ACSH G +E+G    H L M   Y L+  +     + D++ + G ++ A    D + 
Sbjct: 707 VIQACSHLGYLEKGKWVHHKLIM---YGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMS 763

Query: 487 SMPLVPDAFVWGALLGACKIHAKV 510
              +V     W  ++    +H ++
Sbjct: 764 ERSIVS----WSVMIAGYGMHGQI 783



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 123/264 (46%), Gaps = 13/264 (4%)

Query: 42  QFHAFIIKTGS----PQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNAN 97
           Q H +IIKTG+     Q+    +Y K   +   N++     +   V   + I     N  
Sbjct: 622 QIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGY 681

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
            +EAI L+ +M +  +  +  T   V++AC     L  G+ VH   +   L  + Y+   
Sbjct: 682 SVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTA 741

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD-MCQA 216
           L  +Y+ CG ++  H +F       ++R +VSW+ +I  Y  M     A +S F+ M  +
Sbjct: 742 LTDMYSKCGELQMAHGVF----DRMSERSIVSWSVMIAGY-GMHGQINATISLFNQMLGS 796

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            ++P+ +  + +LSACS  G +  G K++ + + + F + P       ++D+  + G++ 
Sbjct: 797 GIKPNDITFMHILSACSHAGAVEEG-KLY-FNSMSEFGVEPKHDHFACMVDLLSRAGDLN 854

Query: 277 SARKVFDEMPV-KNVVSWNSMIAG 299
            A ++   +P   N   W +++ G
Sbjct: 855 GAYQIITSLPFPANSSIWGALLNG 878


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 198/532 (37%), Positives = 299/532 (56%), Gaps = 53/532 (9%)

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           +KAC   +S+R  +QVHA+ +KT    +  +   ++RL A        + L  F Q P+ 
Sbjct: 22  IKAC---KSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPE- 77

Query: 184 QRDLVSWTTLIQAYVKM-DYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLG 241
            R+  +W T+I+A  +  D   +A+L F  M  +A + P+      VL AC+ +  L+ G
Sbjct: 78  -RNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEG 136

Query: 242 IKIHRYI-----TDNHF---------------------------------NLSPD----- 258
            ++H  +      D+ F                                 NL  D     
Sbjct: 137 KQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGRE 196

Query: 259 --VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
             V + N ++D Y + GN+ +AR++FD M  ++VVSWN MI+G    G +KEA++IF RM
Sbjct: 197 FNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRM 256

Query: 317 QGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
             +G + P+  TLV VL + + +G LELGKWVH Y +KN I  D  +G+ALVDMYAKCG 
Sbjct: 257 MQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGS 316

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           I++A  VF  +   +V ++ A+I GLA+HGKA    +  S M + GI P +VT++ +LSA
Sbjct: 317 IEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSA 376

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           CSHAGLV+EG   F DM     L+P+ EHYGCMVDL GRAG + EA +LI +MP+ PD  
Sbjct: 377 CSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDV 436

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           +W ALLGA K+H  +++     E L++  P   GAY+ ++N+Y+S   W     +R  MK
Sbjct: 437 IWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMK 496

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +  ++K PGCS +E+ G  +EF   D SH +  +I+ +L+EI ++    G++
Sbjct: 497 DMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHM 548



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 203/411 (49%), Gaps = 68/411 (16%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQN 80
           P++++ KS+ +LKQ HAF++KTG  Q     +  +I+ LS  ++  ++         L  
Sbjct: 20  PQIKACKSMRELKQVHAFLVKTG--QTHDNAIATEILRLSATSDFRDIGYALSVFDQLPE 77

Query: 81  PQVYLYNFIIQCLSNANP--LEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQ 137
              + +N +I+ L+      L+A+ ++ +ML +  + PN +T P VLKAC     L  G+
Sbjct: 78  RNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGK 137

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH----------------- 180
           QVH   +K  L+ + +V   L+R+Y +CG ++  + LF+                     
Sbjct: 138 QVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREF 197

Query: 181 --------------------------PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
                                       AQR +VSW  +I  Y +  +  EAI  F  M 
Sbjct: 198 NVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMM 257

Query: 215 Q-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
           Q  ++ P+ + LV VL A S+LG L LG  +H Y   N   +  D  + +AL+DMY KCG
Sbjct: 258 QMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRI--DDVLGSALVDMYAKCG 315

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
           +I  A +VF+ +P  NV++WN++I GL   G+  +  +   RM+  G+ P D T + +L+
Sbjct: 316 SIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILS 375

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGN-----ALVDMYAKCGRIDQA 379
           +C++ G ++ G+   ++ + + +N+ G          +VD+  + G +++A
Sbjct: 376 ACSHAGLVDEGR---SFFN-DMVNSVGLKPKIEHYGCMVDLLGRAGYLEEA 422



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 13/205 (6%)

Query: 100 EAIALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           EAI ++  M+  G +LPN  TL  VL A  +   L +G+ VH Y+ K  +  +  + + L
Sbjct: 248 EAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSAL 307

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD-MCQAN 217
           + +YA CG I+   ++F   + PQ   ++++W  +I   + M      I ++   M +  
Sbjct: 308 VDMYAKCGSIEKAIQVF--ERLPQ--NNVITWNAVIGG-LAMHGKANDIFNYLSRMEKCG 362

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITD--NHFNLSPDVFIHNALIDMYLKCGNI 275
           + P  +  + +LSACS  G +  G     +  D  N   L P +  +  ++D+  + G +
Sbjct: 363 ISPSDVTYIAILSACSHAGLVDEG---RSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYL 419

Query: 276 PSARKVFDEMPVK-NVVSWNSMIAG 299
             A ++   MP+K + V W +++  
Sbjct: 420 EEAEELILNMPMKPDDVIWKALLGA 444


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 202/579 (34%), Positives = 309/579 (53%), Gaps = 11/579 (1%)

Query: 34  SKSVGQLKQFHAFIIKTGSPQH--QTQILYDKIISLSRGNEIENL--SLQNPQVYLYNFI 89
           S+++   +Q HA +++ G  +       L D  + + R +    +   + +  V  +N +
Sbjct: 215 SRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNAL 274

Query: 90  IQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I  C+ N +   AI L  +M   GL+PN +TL  +LKAC  + +  +G+Q+H + +K   
Sbjct: 275 ISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANA 334

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            S+ Y+   L+ +YA    +    K+F +  H    RDL+    LI          EA+ 
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFH----RDLILCNALISGCSHGGRHDEALS 390

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F+++ +  L  +   L  VL + + L   S   ++H       F    D  + N LID 
Sbjct: 391 LFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIF--DAHVVNGLIDS 448

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KC  +  A +VF+E    ++++  SMI  L+     + A+ +F  M   GL+PD F L
Sbjct: 449 YWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVL 508

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             +LN+CA++   E GK VH +L K    +D F GNALV  YAKCG I+ A   F S+  
Sbjct: 509 SSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE 568

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           R V S++AMI GLA HG   +AL++F  M   GI P+ +T   VL AC+HAGLV+E  ++
Sbjct: 569 RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRY 628

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M  ++ +    EHY CM+DL GRAG + +A++L+ SMP   +A +WGALLGA ++H 
Sbjct: 629 FNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHK 688

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
             EL ++  E L   EPE  G ++L+ N Y+S   W E  K+RK MK+  +KK P  S +
Sbjct: 689 DPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWI 748

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           EV  + + F  GDKSHP T EIY  L E+       G++
Sbjct: 749 EVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFV 787



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 229/462 (49%), Gaps = 41/462 (8%)

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
           +N  P  AI  +  M  +G+  N + LP VLK    +   R+G QVHA +M T   S+V+
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDA---RLGAQVHAMAMATGFGSDVF 136

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V N L+ +Y   G +    ++F+      ++R+ VSW  L+ AYVK D   +AI  F +M
Sbjct: 137 VANALVAMYGGFGFMDDARRVFN---EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
             + ++P       V++AC+   ++  G ++H  +    ++   DVF  NAL+DMY+K G
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD--KDVFTANALVDMYMKMG 251

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
            +  A  +F++MP  +VVSWN++I+G    G    A+++  +M+  GL P+ FTL  +L 
Sbjct: 252 RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILK 311

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +C+  G  +LG+ +H ++ K + ++D +IG  LVDMYAK   +D A  VF  M  RD+  
Sbjct: 312 ACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLIL 371

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGLV 442
             A+I G +  G+  +AL +F E+ + G+  +  T   VL + +           HA  V
Sbjct: 372 CNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAV 431

Query: 443 EEG-----------------CKHFLDMSRVYNLQPQTEHYGC--MVDLFGRAGLIREALD 483
           + G                 C    D +RV+      +   C  M+    +      A+ 
Sbjct: 432 KIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIK 491

Query: 484 LIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
           L   M    L PD FV  +LL AC   +  E  + V  +L++
Sbjct: 492 LFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 216/463 (46%), Gaps = 19/463 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI ++ EM+  G+ P  +    V+ AC  S+++  G+QVHA  ++     +V+  N L+
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALV 244

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y   G +     +  F + P +  D+VSW  LI   V   +   AI     M  + L 
Sbjct: 245 DMYMKMGRVDIASVI--FEKMPDS--DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+   L  +L ACS  G   LG +IH ++     N   D +I   L+DMY K   +  AR
Sbjct: 301 PNVFTLSSILKACSGAGAFDLGRQIHGFMIKA--NADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVFD M  ++++  N++I+G +H G+  EAL +F  ++  GL  +  TL  VL S A++ 
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
                + VH    K     D  + N L+D Y KC  +  A  VF      D+ + T+MI 
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
            L+       A+ +F EM + G+EPD      +L+AC+     E+G +     + +   Q
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH---AHLIKRQ 535

Query: 460 PQTEHYG--CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
             ++ +    +V  + + G I +A     S+P       W A++G    H   + A   +
Sbjct: 536 FMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRA---L 591

Query: 518 ENLVRFEPEG-DGAYILMTNIYSSKNRW---KEALKLRKKMKE 556
           E   R   EG +  +I MT++  + N      EA +    MKE
Sbjct: 592 ELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 159/317 (50%), Gaps = 12/317 (3%)

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
           +Q+L  G  +HA  +K+  L++    N L+  Y+ C       ++F     P      VS
Sbjct: 17  AQALLPGAHLHASLLKSGSLASFR--NHLISFYSKCRRPCCARRVFDEIPDPCH----VS 70

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W++L+ AY     P  AI +F  M    +  +   L +VL     + D  LG ++H    
Sbjct: 71  WSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAM 127

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKE 308
              F    DVF+ NAL+ MY   G +  AR+VF+E    +N VSWN +++      Q  +
Sbjct: 128 ATGFG--SDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGD 185

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A+ +F  M   G++P +F   CV+N+C     +E G+ VH  + +   + D F  NALVD
Sbjct: 186 AIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVD 245

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           MY K GR+D A  +F  M   DV S+ A+I G  ++G   +A+++  +M   G+ P+  T
Sbjct: 246 MYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFT 305

Query: 429 FVGVLSACSHAGLVEEG 445
              +L ACS AG  + G
Sbjct: 306 LSSILKACSGAGAFDLG 322


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 201/567 (35%), Positives = 305/567 (53%), Gaps = 75/567 (13%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQ 79
           S  L++  +   L+Q HA II+ G   HQ   L  + ++L   N + N S        + 
Sbjct: 29  STLLKACTTTSTLEQVHARIIRKG--LHQDHFLISQFLTLC--NSLSNFSYTTSVFNGVS 84

Query: 80  NPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +P   L+N  I+  S N +    ++L+  M     +P+ +T P ++KAC +   ++ G  
Sbjct: 85  SPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVA 144

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
            H  +++  +  +V+V  +L+ LY  CG I    K+F        +R++VSWT +I  Y 
Sbjct: 145 FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVF----DEMGERNVVSWTAMIAGYA 200

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
                 EA   F +M + N                                         
Sbjct: 201 SFSDLVEARKLFDEMPEKN----------------------------------------- 219

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ-------FKEALD 311
               NA+I  Y+KCG++ SARK+FDEMP +NVVS+ +MI G    G        F+EA +
Sbjct: 220 AVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPE 279

Query: 312 ---------IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT-DGF 361
                    IFR      +KPD+F +V ++++C+ +G LEL KWV  Y+ K+ I+     
Sbjct: 280 RDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAH 339

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           +  AL+DM AKCG +D+A  +F  M  RD+ SY +M+ GL+IHG   +A+ +FS M   G
Sbjct: 340 VIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEG 399

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           + PD+V F  +L+ACS AGLV+EGC +F  M   Y++ P  +HY CMVDL GRAG ++EA
Sbjct: 400 LTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEA 459

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
            +L+KSMP+ P A  WGALLGACK+H  +EL E+V + L   EP+  G Y+L++NIY++ 
Sbjct: 460 YELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAA 519

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLV 568
            +W +   LR KM+ER ++K PGCS +
Sbjct: 520 EQWLDVSLLRNKMRERGIRKIPGCSWI 546



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 162/390 (41%), Gaps = 44/390 (11%)

Query: 192 TLIQAYVKMDYPTE-AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
           T I+ Y  + +P     L  FD   +        +  +L AC+    L    ++H  I  
Sbjct: 2   TFIRRYTALTFPDYLPTLRSFDTTSS--------ISTLLKACTTTSTLE---QVHARIIR 50

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
               L  D F+ +  + +     N      VF+ +   + V WN+ I G +        +
Sbjct: 51  K--GLHQDHFLISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTV 108

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
            +F RM+     PD FT   ++ +C+ +  ++ G   H    +  +  D F+  +L+D+Y
Sbjct: 109 SLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLY 168

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
            KCG I  A  VF  M  R+V S+TAMI G A      +A  +F EM     E + V++ 
Sbjct: 169 GKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP----EKNAVSWN 224

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP- 489
            ++S     G +    K F +M            +  M+D + ++G +  A  + +  P 
Sbjct: 225 AIISGYVKCGDLRSARKMFDEMP-----HRNVVSFTTMIDGYAKSGDMASARFVFEEAPE 279

Query: 490 ------------------LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
                             + PD F+  +L+ AC     +ELA+ V + + +   +   A+
Sbjct: 280 RDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAH 339

Query: 532 IL--MTNIYSSKNRWKEALKLRKKMKERKV 559
           ++  + ++ +       A KL ++M +R +
Sbjct: 340 VIAALIDMNAKCGSMDRATKLFEEMPKRDL 369


>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 617

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 187/505 (37%), Positives = 292/505 (57%), Gaps = 12/505 (2%)

Query: 79  QNPQVYLYNFIIQCLSNA-NPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + P  Y +N++I+ L+N  N  E A++LYR M   GL P+ +T  +V  AC + + + VG
Sbjct: 89  EEPNHYSFNYMIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVG 148

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           + VH+   K  L  + ++ ++L+ +YA CGL+    K+F         R  VSW ++I  
Sbjct: 149 RSVHSSLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFD----EITDRVTVSWNSMISG 204

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y +     +A+  F  M +    PD   LV +L AC+ LGDL+ G  + +        LS
Sbjct: 205 YSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLS 264

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
              F+ + LI MY KCG++ SAR+VF++M  K+ V+WN+MI   +  G+  EA  +F  M
Sbjct: 265 --TFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEM 322

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +  G+ PD  TL  VL++C ++G LELGK + T+  +  +  + ++   LVDMY KCG I
Sbjct: 323 EKTGVSPDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHI 382

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           ++A  VF +M  ++  ++ AMI   A  G A +AL +F +M    + P +VTF+GVLSAC
Sbjct: 383 EEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDQMP---VPPSDVTFIGVLSAC 439

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
            HAGLV++GC++F +MS ++ L P+ EHY  ++DL  RAGL+ EA + ++  P  PD  +
Sbjct: 440 VHAGLVDQGCRYFHEMSSLFGLVPKIEHYTNIIDLLSRAGLLDEAWEFMERFPGKPDEIM 499

Query: 497 WGALLGACKIHAKVELAEIVMENLVRF-EPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
             A+LGAC     V + E  M  L+   E +  G Y++ + + +    W E+ K+R  M+
Sbjct: 500 LAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSKVLADMKMWDESAKMRALMR 559

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKG 580
           +R V KTPGCS +E+ GE  EF  G
Sbjct: 560 DRGVVKTPGCSWIEINGELMEFLAG 584


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/569 (34%), Positives = 312/569 (54%), Gaps = 55/569 (9%)

Query: 47  IIKTGSPQHQTQILYDKIISLSRGNEIENLS------LQNPQVYLYNFIIQ-CLSNANPL 99
           +IKT + Q     L ++ IS        NL+      +QNP V ++N +I+ C+      
Sbjct: 1   MIKTNTTQ--DCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSE 58

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+  Y  ML   ++P +Y+   ++KAC        G+ VH +  K    S+V+V  TL+
Sbjct: 59  QALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLI 118

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
             Y+  G +    ++F        +RD+ +WTT+I A+V+            DM  A   
Sbjct: 119 EFYSTFGDVGGSRRVFD----DMPERDVFAWTTMISAHVRDG----------DMASAGRL 164

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            D M                                  +V   NA+ID Y K GN  SA 
Sbjct: 165 FDEMP-------------------------------EKNVATWNAMIDGYGKLGNAESAE 193

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +F++MP ++++SW +M+   +   ++KE + +F  +   G+ PD+ T+  V+++CA++G
Sbjct: 194 FLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLG 253

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L LGK VH YL     + D +IG++L+DMYAKCG ID A  VF  ++ ++++ +  +I 
Sbjct: 254 ALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIID 313

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           GLA HG   +AL +F EM +  I P+ VTF+ +L+AC+HAG +EEG + F+ M + Y + 
Sbjct: 314 GLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIA 373

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           PQ EHYGCMVDL  +AGL+ +AL++I++M + P++F+WGALL  CK+H  +E+A I ++N
Sbjct: 374 PQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQN 433

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV-KKTPGCSLVEVYGEFYEFR 578
           L+  EP   G Y L+ N+Y+ +NRW E  K+R  MK+  V K+ PG S VE+    + F 
Sbjct: 434 LMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTVHLFA 493

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             D  HP   +++ LL E+  Q +  GY+
Sbjct: 494 ASDTYHPSYSQLHLLLAELDDQLRLAGYV 522


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/591 (32%), Positives = 314/591 (53%), Gaps = 12/591 (2%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTG-SP----QHQTQILYDKIISLSRGNEIENLS 77
           +L H       +K + + KQ HA +I  G +P     +    +Y K   L    ++ +  
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTM 66

Query: 78  LQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
            Q   V     I     N+   EAI  +  M I G +P  +     ++AC    S+ +G+
Sbjct: 67  PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGK 126

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           Q+H  ++K  + S ++V + L  +Y+ CG +    K+F         +D VSWT +I  Y
Sbjct: 127 QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFE----EMPCKDEVSWTAMIDGY 182

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            K+    EA+L+F  M    +  D  +L   L AC  L     G  +H  +    F    
Sbjct: 183 SKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFE--S 240

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFD-EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           D+F+ NAL DMY K G++ SA  VF  +   +NVVS+  +I G     Q ++ L +F  +
Sbjct: 241 DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +  G++P++FT   ++ +CAN   LE G  +H  + K + + D F+ + LVDMY KCG +
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           +QA   F  +      ++ +++     HG    A+ IF  M   G++P+ +TF+ +L+ C
Sbjct: 361 EQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGC 420

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SHAGLVEEG  +F  M + Y + P  EHY C++DL GRAG ++EA + I  MP  P+AF 
Sbjct: 421 SHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFG 480

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W + LGAC+IH   E+ ++  E LV+ EP+  GA +L++NIY+++ +W++   +R +M++
Sbjct: 481 WCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRD 540

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             VKK PG S V+V  + + F   D SHP+   IY+ LD ++ Q K  GY+
Sbjct: 541 GNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYV 591



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 212/410 (51%), Gaps = 9/410 (2%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           +L +T  L +V++   +++ LR G+Q+HA  +        ++ N L+ +Y+ CG +    
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
           KLF        QR+LVSWT +I    +    +EAI +F  M      P        + AC
Sbjct: 61  KLF----DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRAC 116

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           + LG + +G ++H       F +  ++F+ + L DMY KCG +  A KVF+EMP K+ VS
Sbjct: 117 ASLGSIEMGKQMHCLAL--KFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS 174

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W +MI G +  G+F+EAL  F++M    +  D   L   L +C  +   + G+ VH+ + 
Sbjct: 175 WTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV 234

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFR-SMKCRDVYSYTAMIVGLAIHGKAWKAL 411
           K    +D F+GNAL DMY+K G ++ A  VF    +CR+V SYT +I G     +  K L
Sbjct: 235 KLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGL 294

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
            +F E+ + GIEP+E TF  ++ AC++   +E+G +    + ++ N          +VD+
Sbjct: 295 SVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI-NFDEDPFVSSILVDM 353

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
           +G+ GL+ +A+     +   P    W +L+     H   + A  + E +V
Sbjct: 354 YGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFGQHGLGKDAIKIFERMV 402


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 192/509 (37%), Positives = 299/509 (58%), Gaps = 7/509 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +++ L+ +M I G  PN +T+   LK+C   ++ +VG+ VH  ++K     ++YV   L+
Sbjct: 188 DSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALL 247

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY   G I    + F        + DL+ W+ +I  Y + D   EA+  F  M Q+++ 
Sbjct: 248 ELYTKSGEIAEAQQFFE----EMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVV 303

Query: 220 -PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            P+      VL AC+ L  L+LG +IH  +      L  +VF+ NAL+D+Y KCG I ++
Sbjct: 304 VPNNFTFASVLQACASLVLLNLGNQIHSCVL--KVGLDSNVFVSNALMDVYAKCGEIENS 361

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
            K+F     KN V+WN++I G    G  ++AL++F  M GL ++P + T   VL + A++
Sbjct: 362 VKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASL 421

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             LE G+ +H+   K   N D  + N+L+DMYAKCGRID A   F  M  +D  S+ A+I
Sbjct: 422 VALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALI 481

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G +IHG   +AL++F  M Q   +P+++TFVGVLSACS+AGL+++G  HF  M + Y +
Sbjct: 482 CGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGI 541

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +P  EHY CMV L GR+G   EA+ LI  +P  P   VW ALLGAC IH  ++L ++  +
Sbjct: 542 EPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQ 601

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            ++  EP+ D  ++L++N+Y++  RW     +RK MK++KVKK PG S VE  G  + F 
Sbjct: 602 RVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFT 661

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            GD SHP    I+ +L+ +  ++++ GY+
Sbjct: 662 VGDTSHPNIKLIFAMLEWLYKKTRDAGYV 690



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 176/370 (47%), Gaps = 8/370 (2%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           ++++   +L+   +++    G+ +H + +K     +++  N L+  Y   G ++   KLF
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
              + P    + VS+ TL Q + +      A      + +     +  +   +L     +
Sbjct: 62  D--EMPLT--NTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSM 117

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
                 + +H Y+         D F+  ALID Y  CGN+ +AR+VFD +  K++VSW  
Sbjct: 118 DLADTCLSVHAYVY--KLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTG 175

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           M+A        +++L +F +M+ +G +P++FT+   L SC  +   ++GK VH    K  
Sbjct: 176 MVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVC 235

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
            + D ++G AL+++Y K G I +A   F  M   D+  ++ MI   A   K+ +AL++F 
Sbjct: 236 YDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFC 295

Query: 416 EMSQVG-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            M Q   + P+  TF  VL AC+   L+  G +    + +V  L         ++D++ +
Sbjct: 296 RMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKV-GLDSNVFVSNALMDVYAK 354

Query: 475 AGLIREALDL 484
            G I  ++ L
Sbjct: 355 CGEIENSVKL 364



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 19/269 (7%)

Query: 41  KQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENL------SLQNPQVYLYNFIIQC 92
            Q H+ ++K G  S    +  L D     ++  EIEN       S +  +V     I+  
Sbjct: 327 NQIHSCVLKVGLDSNVFVSNALMD---VYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGY 383

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           +   +  +A+ L+  ML   + P   T   VL+A     +L  G+Q+H+ ++KT    + 
Sbjct: 384 VQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDS 443

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V N+L+ +YA CG I      F        ++D VSW  LI  Y       EA L+ FD
Sbjct: 444 VVANSLIDMYAKCGRIDDARLTF----DKMDKQDEVSWNALICGYSIHGLGMEA-LNLFD 498

Query: 213 MC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
           M  Q+N +P+ +  V VLSACS  G L  G + H       + + P +  +  ++ +  +
Sbjct: 499 MMQQSNSKPNKLTFVGVLSACSNAGLLDKG-RAHFKSMLQDYGIEPCIEHYTCMVWLLGR 557

Query: 272 CGNIPSARKVFDEMPVK-NVVSWNSMIAG 299
            G    A K+  E+P + +V+ W +++  
Sbjct: 558 SGQFDEAVKLIGEIPFQPSVMVWRALLGA 586


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 186/488 (38%), Positives = 293/488 (60%), Gaps = 11/488 (2%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT--LMRLYAVCGLIKAVHKLFHFRQH 180
           +++ C  SQS    +Q+HA+S++  +      FN   +  L ++   +    ++F+  Q 
Sbjct: 40  LVQLCGSSQSKL--KQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQA 97

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLS 239
           P    ++ +W T+I+ + + + P+ A+  F  M  A+ + PD      +  A +KL D+S
Sbjct: 98  P----NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVS 153

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           LG  IH  +  N F+     F+ N+L+ MY   G++ SA +VF+ M  ++ V+WNS+I G
Sbjct: 154 LGEGIHSVVVRNGFD--SLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVING 211

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G   EAL ++R M   G++PD FT+V +L++C  +G L LG+ VH Y+ K  +  +
Sbjct: 212 FALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQN 271

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
               NAL+D+Y+KCG    A  VF  M+ R V S+T++IVGLA++G   +AL +F E+ +
Sbjct: 272 QHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELER 331

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G++P E+TFVGVL ACSH G+++EG  +F  M   Y + P+ EH+GCMVDL  RAG + 
Sbjct: 332 QGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVG 391

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           +A D I++MP+ P+A +W  LLGAC IH  +EL E+    + R E    G ++L++N+Y+
Sbjct: 392 DAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYA 451

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
           S+ RW +   +RK M  + VKKTPG SLVE+    YEF  GD+SHP++ E Y +L +I  
Sbjct: 452 SERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQ 511

Query: 600 QSKNHGYI 607
             K  GY+
Sbjct: 512 LLKIEGYV 519



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 147/524 (28%), Positives = 242/524 (46%), Gaps = 83/524 (15%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQI---LYDKIISLSR----GNEIENLSLQNPQVYLYNF 88
           S  +LKQ HAF I+ G P         L   ++SLS       +I N  +Q P ++ +N 
Sbjct: 47  SQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFN-QIQAPNIFTWNT 105

Query: 89  IIQCLSNA-NPLEAIALYREM-LIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           +I+  + + NP  A+ L+ +M     +LP+T+T P++ KA  +   + +G+ +H+  ++ 
Sbjct: 106 MIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRN 165

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
              S  +V N+L+ +Y+V G + + +++F    +    RD V+W ++I  +     P EA
Sbjct: 166 GFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSY----RDRVAWNSVINGFALNGMPNEA 221

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  + +M    + PDG  +V +LSAC +LG L+LG ++H Y+      L  +    NAL+
Sbjct: 222 LTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVK--VGLVQNQHASNALL 279

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           D+Y KCGN   A+KVFDEM  ++VVSW S+I GL   G   EAL +F  ++  GLKP + 
Sbjct: 280 DLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEI 339

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T V VL +C++                                   CG +D+ F  FR M
Sbjct: 340 TFVGVLYACSH-----------------------------------CGMLDEGFNYFRRM 364

Query: 387 K-----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           K        +  +  M+  L   GK   A D    M    + P+ V +  +L AC+  G 
Sbjct: 365 KEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMP---VPPNAVIWRTLLGACTIHGH 421

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD--------LIKSMPLVPD 493
           +E G     +++R    + +  H G  V L       R  LD        L+K +   P 
Sbjct: 422 LELG-----EVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTP- 475

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
                   G   +  K  + E +M +  R  P+ +  Y ++  I
Sbjct: 476 --------GYSLVELKNRVYEFIMGD--RSHPQSEETYAMLAKI 509


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 200/575 (34%), Positives = 315/575 (54%), Gaps = 19/575 (3%)

Query: 41  KQFHAFIIKTGSP--QHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQ-- 91
           ++ H  ++K G    Q     L D     S+  EIE        + +P V  +N II   
Sbjct: 203 RKIHGLMLKMGLDLDQFSANALVDM---YSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGC 259

Query: 92  CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
            L + N L A+ L  EM   G  PN +TL   LKAC       +G+Q+H+  +K    S+
Sbjct: 260 VLHDCNDL-ALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSD 318

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
           ++    L+ +Y+ C ++    + +        ++D+++W  LI  Y +     +A+  F 
Sbjct: 319 LFAAVGLVDMYSKCEMMDDARRAYD----SMPKKDIIAWNALISGYSQCGDHLDAVSLFS 374

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            M   ++  +   L  VL + + L  + +  +IH     +   +  D ++ N+L+D Y K
Sbjct: 375 KMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKS--GIYSDFYVINSLLDTYGK 432

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           C +I  A K+F+E   +++V++ SMI   +  G  +EAL ++ +MQ   +KPD F    +
Sbjct: 433 CNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSL 492

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           LN+CAN+   E GK +H +  K     D F  N+LV+MYAKCG I+ A   F  +  R +
Sbjct: 493 LNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGI 552

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            S++AMI G A HG   +AL +F++M + G+ P+ +T V VL AC+HAGLV EG ++F  
Sbjct: 553 VSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEK 612

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           M  ++ ++P  EHY CM+DL GR+G + EA++L+ S+P   D FVWGALLGA +IH  +E
Sbjct: 613 MEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIE 672

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           L +   + L   EPE  G ++L+ NIY+S   W+   K+RK MK+ KVKK PG S +E+ 
Sbjct: 673 LGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIK 732

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            + Y F  GD+SH ++ EIY  LD++       GY
Sbjct: 733 DKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGY 767



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 162/561 (28%), Positives = 267/561 (47%), Gaps = 49/561 (8%)

Query: 42  QFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           + HA +IK G     S ++    LY K        ++ + S +   V   + +   + N 
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
              EA+ ++ EM + G+  N +T P VLKAC   + L +G++VH  ++ T   S+ +V N
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
           TL+ +YA CGL+    +LF        +R++VSW  L   YV+ +   EA+  F +M ++
Sbjct: 122 TLVVMYAKCGLLDDSRRLF----GGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRS 177

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            + P+   + I+L+AC+ L +  LG KIH  +     +L  D F  NAL+DMY K G I 
Sbjct: 178 GIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDL--DQFSANALVDMYSKAGEIE 235

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A  VF ++   +VVSWN++IAG         AL +   M+G G +P+ FTL   L +CA
Sbjct: 236 GAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACA 295

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            +G+ ELG+ +H+ L K   ++D F    LVDMY+KC  +D A   + SM  +D+ ++ A
Sbjct: 296 AMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNA 355

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I G +  G    A+ +FS+M    I+ ++ T   VL + +    ++  CK    +S   
Sbjct: 356 LISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKV-CKQIHTISIKS 414

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            +         ++D +G+   I EA  + +                           E  
Sbjct: 415 GIYSDFYVINSLLDTYGKCNHIDEASKIFE---------------------------ERT 447

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP--GCSLVEVYGEF 574
            E+LV        AY  M   YS     +EALKL  +M++  +K  P    SL+      
Sbjct: 448 WEDLV--------AYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANL 499

Query: 575 YEFRKGDKSHPKTLEIYKLLD 595
             + +G + H   ++   + D
Sbjct: 500 SAYEQGKQLHVHAIKFGFMCD 520


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 202/579 (34%), Positives = 309/579 (53%), Gaps = 11/579 (1%)

Query: 34  SKSVGQLKQFHAFIIKTGSPQH--QTQILYDKIISLSRGNEIENL--SLQNPQVYLYNFI 89
           S+++   +Q HA +++ G  +       L D  + + R +    +   + +  V  +N +
Sbjct: 215 SRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNAL 274

Query: 90  IQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I  C+ N +   AI L  +M   GL+PN +TL  +LKAC  + +  +G+Q+H + +K   
Sbjct: 275 ISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANA 334

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            S+ Y+   L+ +YA    +    K+F +  H    RDL+    LI          EA+ 
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFH----RDLILCNALISGCSHGGRHDEALS 390

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F+++ +  L  +   L  VL + + L   S   ++H       F    D  + N LID 
Sbjct: 391 LFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIF--DAHVVNGLIDS 448

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KC  +  A +VF+E    ++++  SMI  L+     + A+ +F  M   GL+PD F L
Sbjct: 449 YWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVL 508

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             +LN+CA++   E GK VH +L K    +D F GNALV  YAKCG I+ A   F S+  
Sbjct: 509 SSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPE 568

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           R V S++AMI GLA HG   +AL++F  M   GI P+ +T   VL AC+HAGLV+E  ++
Sbjct: 569 RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRY 628

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M  ++ +    EHY CM+DL GRAG + +A++L+ SMP   +A +WGALLGA ++H 
Sbjct: 629 FNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHK 688

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
             EL ++  E L   EPE  G ++L+ N Y+S   W E  K+RK MK+  +KK P  S +
Sbjct: 689 DPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWI 748

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           EV  + + F  GDKSHP T EIY  L E+       G++
Sbjct: 749 EVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFV 787



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 229/462 (49%), Gaps = 41/462 (8%)

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
           +N  P  AI  +  M  +G+  N + LP VLK    +   R+G QVHA +M T   S+V+
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDA---RLGAQVHAMAMATGFGSDVF 136

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V N L+ +Y   G +    ++F+      ++R+ VSW  L+ AYVK D   +AI  F +M
Sbjct: 137 VANALVAMYGGFGFMDDARRVFN---EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
             + ++P       V++AC+   ++  G ++H  +    ++   DVF  NAL+DMY+K G
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD--KDVFTANALVDMYMKMG 251

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
            +  A  +F++MP  +VVSWN++I+G    G    A+++  +M+  GL P+ FTL  +L 
Sbjct: 252 RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILK 311

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +C+  G  +LG+ +H ++ K + ++D +IG  LVDMYAK   +D A  VF  M  RD+  
Sbjct: 312 ACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLIL 371

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGLV 442
             A+I G +  G+  +AL +F E+ + G+  +  T   VL + +           HA  V
Sbjct: 372 CNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAV 431

Query: 443 EEG-----------------CKHFLDMSRVYNLQPQTEHYGC--MVDLFGRAGLIREALD 483
           + G                 C    D +RV+      +   C  M+    +      A+ 
Sbjct: 432 KIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIK 491

Query: 484 LIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
           L   M    L PD FV  +LL AC   +  E  + V  +L++
Sbjct: 492 LFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 216/463 (46%), Gaps = 19/463 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI ++ EM+  G+ P  +    V+ AC  S+++  G+QVHA  ++     +V+  N L+
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALV 244

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y   G +     +  F + P +  D+VSW  LI   V   +   AI     M  + L 
Sbjct: 245 DMYMKMGRVDIASVI--FEKMPDS--DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+   L  +L ACS  G   LG +IH ++     N   D +I   L+DMY K   +  AR
Sbjct: 301 PNVFTLSSILKACSGAGAFDLGRQIHGFMIKA--NADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVFD M  ++++  N++I+G +H G+  EAL +F  ++  GL  +  TL  VL S A++ 
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
                + VH    K     D  + N L+D Y KC  +  A  VF      D+ + T+MI 
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
            L+       A+ +F EM + G+EPD      +L+AC+     E+G +     + +   Q
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH---AHLIKRQ 535

Query: 460 PQTEHYG--CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
             ++ +    +V  + + G I +A     S+P       W A++G    H   + A   +
Sbjct: 536 FMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRA---L 591

Query: 518 ENLVRFEPEG-DGAYILMTNIYSSKNRW---KEALKLRKKMKE 556
           E   R   EG +  +I MT++  + N      EA +    MKE
Sbjct: 592 ELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 158/317 (49%), Gaps = 12/317 (3%)

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
           +Q+L  G  +HA  +K+  L++    N L+  Y+ C       + F     P      VS
Sbjct: 17  AQALLPGAHLHASLLKSGSLASFR--NHLISFYSKCRRPCCARRFFDEIPDPCH----VS 70

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W++L+ AY     P  AI +F  M    +  +   L +VL     + D  LG ++H    
Sbjct: 71  WSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAM 127

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKE 308
              F    DVF+ NAL+ MY   G +  AR+VF+E    +N VSWN +++      Q  +
Sbjct: 128 ATGFG--SDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGD 185

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A+ +F  M   G++P +F   CV+N+C     +E G+ VH  + +   + D F  NALVD
Sbjct: 186 AIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVD 245

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           MY K GR+D A  +F  M   DV S+ A+I G  ++G   +A+++  +M   G+ P+  T
Sbjct: 246 MYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFT 305

Query: 429 FVGVLSACSHAGLVEEG 445
              +L ACS AG  + G
Sbjct: 306 LSSILKACSGAGAFDLG 322


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 187/517 (36%), Positives = 303/517 (58%), Gaps = 13/517 (2%)

Query: 97  NPLEAIALYREMLIK--GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           NP     L+   LI    L P+      +LK C     L+ G+ VH + M +   +++ +
Sbjct: 69  NPNSTTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVI 128

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP---TEAILSFF 211
            N+++ +YA CG ++   ++F         +D+V+WT++I  Y +  Y    T A++ F 
Sbjct: 129 KNSILFMYAKCGSLEIARQVFD----EMCVKDVVTWTSMITGYSQDGYASSATTALVLFL 184

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
           +M +  LRP+   L  ++  C  LG    G +IH       +    +VF+ ++L+DMY +
Sbjct: 185 EMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWK--YGFQENVFVGSSLVDMYAR 242

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           CG +  +R VFDE+  KN VSWN++I+G   +G+ +EAL +F +MQ  G    +FT   +
Sbjct: 243 CGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSAL 302

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L S +  G LE GKW+H ++ K+     G++GN L+ MYAK G I  A  VF  +   DV
Sbjct: 303 LCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDV 362

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMS-QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
            S  +M++G A HG   +A+++F EM   V IEP+++TF+ VL+ACSHAGL++EG  +F 
Sbjct: 363 VSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYF- 421

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
           ++ + Y L+P+  HY  +VDLFGRAGL+ +A   I+ MP+ P+A +WGALLGA K+H   
Sbjct: 422 ELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNT 481

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           E+     + ++  +P   GA+ L++NIY+S  +WK+  K+RK+MK+  +KK P CS VE+
Sbjct: 482 EMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEI 541

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
               + F   D SHP+  ++Y++ + +  + K  GY+
Sbjct: 542 ENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYV 578


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 320/572 (55%), Gaps = 13/572 (2%)

Query: 41  KQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           KQ HA++++ G+    + +      Y K   +  G ++ +  +    +     I   + N
Sbjct: 250 KQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQN 309

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           +   EA+ L+ EM   G  P+ +    VL +C   ++L  G+QVHAY++K  L S+ +V 
Sbjct: 310 SFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVK 369

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ +YA   L+    K+F       A+++++S+  +I+ Y   +  +EA+  F +M  
Sbjct: 370 NGLIDMYAKSNLLIDAKKVFDV----MAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 425

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
               P  +  V +L   + L  L L  +IH  I    F +S D+F  +ALID+Y KC  +
Sbjct: 426 RLFPPSLLTFVSLLGVSASLFALELSKQIHGLII--KFGVSLDLFAGSALIDVYSKCSYV 483

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             AR VF+EM  K++V WN+M  G T   + +EAL ++  +Q    KP++FT   ++ + 
Sbjct: 484 KDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAA 543

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           +N+  L  G+  H  L K  ++   F+ NALVDMYAKCG I++A  +F S   RDV  + 
Sbjct: 544 SNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWN 603

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI   A HG+A +AL +F EM + GI+P+ VTFV VLSACSHAG VE+G  HF  M   
Sbjct: 604 SMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPG- 662

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + ++P TEHY C+V L GR+G + EA + I+ MP+ P A VW +LL AC+I   VEL + 
Sbjct: 663 FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKY 722

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             E  +  +P+  G+YIL++NI++SK  W +  K+R +M   +V K PG S +EV  +  
Sbjct: 723 AAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVN 782

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F   D +H +  +I  +LD ++   K  GY+
Sbjct: 783 VFIARDTTH-READIGSVLDILIQHIKGAGYV 813



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 145/481 (30%), Positives = 235/481 (48%), Gaps = 21/481 (4%)

Query: 42  QFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQV-----YLYNFII----QC 92
           Q H F++++G  Q    +    I   S+   IE   L   Q+       +  II    +C
Sbjct: 150 QLHGFVVRSGFDQ-DVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKC 208

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
             +A  LE  A  RE     ++P+ Y +  VL AC   + L  G+Q+HAY ++     +V
Sbjct: 209 GRSAVSLELFAQMRE---TNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDV 265

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V N L+  Y  C  +KA  KLF         ++++SWTT+I  Y++  +  EA+  F +
Sbjct: 266 SVVNVLIDFYTKCNRVKAGRKLF----DQMVVKNIISWTTMISGYMQNSFDWEAMKLFGE 321

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +   +PDG     VL++C     L  G ++H Y      NL  D F+ N LIDMY K 
Sbjct: 322 MNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKA--NLESDEFVKNGLIDMYAKS 379

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
             +  A+KVFD M  +NV+S+N+MI G + + +  EAL++F  M+     P   T V +L
Sbjct: 380 NLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL 439

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
              A++  LEL K +H  + K  ++ D F G+AL+D+Y+KC  +  A  VF  M  +D+ 
Sbjct: 440 GVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIV 499

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            + AM  G   H +  +AL ++S +     +P+E TF  +++A S+   +  G + F + 
Sbjct: 500 VWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHG-QQFHNQ 558

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
                L         +VD++ + G I EA  +  S  +  D   W +++     H + E 
Sbjct: 559 LVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEE 617

Query: 513 A 513
           A
Sbjct: 618 A 618



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 133/415 (32%), Positives = 210/415 (50%), Gaps = 9/415 (2%)

Query: 100 EAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           EA+ ++ ++  K G  PN + L  V++AC Q   +  G Q+H + +++    +VYV  +L
Sbjct: 111 EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSL 170

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           +  Y+  G I+    +F       +++  V+WTT+I  Y K      ++  F  M + N+
Sbjct: 171 IDFYSKNGNIEEARLVF----DQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 226

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            PD  ++  VLSACS L  L  G +IH Y+      +  DV + N LID Y KC  + + 
Sbjct: 227 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM--DVSVVNVLIDFYTKCNRVKAG 284

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           RK+FD+M VKN++SW +MI+G        EA+ +F  M  LG KPD F    VL SC + 
Sbjct: 285 RKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSR 344

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             LE G+ VH Y  K ++ +D F+ N L+DMYAK   +  A  VF  M  ++V SY AMI
Sbjct: 345 EALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMI 404

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G +   K  +AL++F EM      P  +TFV +L   S +    E  K    +   + +
Sbjct: 405 EGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL-GVSASLFALELSKQIHGLIIKFGV 463

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
                    ++D++ +   +++A  + + M    D  VW A+      H + E A
Sbjct: 464 SLDLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMFFGYTQHLENEEA 517



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 227/456 (49%), Gaps = 41/456 (8%)

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +H   + + L S+ ++ N L+ + +    +     +F    H    ++L++W++++  Y 
Sbjct: 49  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPH----KNLITWSSMVSMYS 104

Query: 199 KMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           +  Y  EA++ F D+  ++   P+  +L  V+ AC++LG +  G ++H ++  + F+   
Sbjct: 105 QQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFD--Q 162

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           DV++  +LID Y K GNI  AR VFD++  K  V+W ++IAG T  G+   +L++F +M+
Sbjct: 163 DVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMR 222

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              + PD + +  VL++C+ + +LE GK +H Y+ +     D  + N L+D Y KC R+ 
Sbjct: 223 ETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVK 282

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
               +F  M  +++ S+T MI G   +   W+A+ +F EM+++G +PD      VL++C 
Sbjct: 283 AGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCG 342

Query: 438 HAGLVEEG----------------------------CKHFLDMSRVYNLQPQTE--HYGC 467
               +E+G                                +D  +V+++  +     Y  
Sbjct: 343 SREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNA 402

Query: 468 MVDLFGRAGLIREALDLIKSMPLV---PDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           M++ +     + EAL+L   M +    P    + +LLG       +EL++ +   +++F 
Sbjct: 403 MIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFG 462

Query: 525 PEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
              D  A   + ++YS  +  K+A  + ++M E+ +
Sbjct: 463 VSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDI 498


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 185/514 (35%), Positives = 300/514 (58%), Gaps = 6/514 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N N   A+ +   M  +G+  +T T+  +L  C QS  +  G  +H + +K  L S+V+V
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ +Y+  G ++    +F   +     RDLVSW ++I AY + + P+ A+  F  M 
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQME----VRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ 315

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              +RPD + +V + S  S+L D  +   I  ++    + L  DV I NAL++MY K G 
Sbjct: 316 LGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREW-LDKDVVIGNALVNMYAKLGY 374

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLN 333
           +  A  VFD++P K+ +SWN+++ G T  G   EA+D +  M+      P+  T V ++ 
Sbjct: 375 MNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIP 434

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           + +++G L+ G  +H  L KN +  D F+   L+D+Y KCGR++ A  +F  +       
Sbjct: 435 AYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP 494

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           + A+I  L IHG+  +AL +F +M    ++ D +TFV +LSACSH+GLV+EG K F  M 
Sbjct: 495 WNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQ 554

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           + Y ++P  +HYGCMVDL GRAG + +A +L+++MP+ PDA +WGALL ACKI+   EL 
Sbjct: 555 KEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELG 614

Query: 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
            +  + L+  + E  G Y+L++NIY++  +W+  +K+R   ++R ++KTPG S V V  +
Sbjct: 615 TLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSK 674

Query: 574 FYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              F  G+++HPK  EIYK L  +  + K+ GY+
Sbjct: 675 AEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYV 708



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 219/418 (52%), Gaps = 13/418 (3%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L P+ YT P +LKAC    SL  G++VH    K     +V+V  +L+ LY+  G++   H
Sbjct: 120 LRPDFYTFPPILKAC---VSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAH 176

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
           K+F         +D+ SW  +I  + +      A+     M    ++ D + +  +L  C
Sbjct: 177 KVF----VDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVC 232

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           ++  D+  G+ IH ++  +   L  DVF+ NALI+MY K G +  A+ VFD+M V+++VS
Sbjct: 233 AQSDDVINGVLIHLHVLKH--GLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS 290

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WNS+IA          AL  F+ MQ  G++PD  T+V + +  + +    + + +  ++ 
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 353 KNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
           +   ++ D  IGNALV+MYAK G ++ A  VF  +  +D  S+  ++ G   +G A +A+
Sbjct: 351 RREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAI 410

Query: 412 DIFSEMSQV-GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           D ++ M +     P++ T+V ++ A SH G +++G K    + +  +L        C++D
Sbjct: 411 DAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIK-NSLYLDVFVATCLID 469

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
           L+G+ G + +A+ L   +P    +  W A++ +  IH + E A  + ++++    + D
Sbjct: 470 LYGKCGRLEDAMSLFYEIPR-DTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKAD 526



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 192/428 (44%), Gaps = 68/428 (15%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +++HA  +      N+ +   L+ LY   G I      F +      ++++ SW ++I A
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH----KKNIFSWNSIISA 94

Query: 197 YVKMDYPTEA---ILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           YV+     EA   +   F MC   +LRPD      +L AC  L D   G K+H  +    
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMG 151

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           F    DVF+  +L+ +Y + G +  A KVF +MPVK+V SWN+MI+G    G    AL +
Sbjct: 152 FE--DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV 209

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
             RM+G G+K D  T+  +L  CA    +  G  +H ++ K+ +++D F+ NAL++MY+K
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK 269

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
            GR+  A  VF  M+ RD+ S+ ++I     +     AL  F  M   GI PD +T V +
Sbjct: 270 FGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329

Query: 433 LSACS----------------------------------HAGLVEEGCKHFLDMSRVYNL 458
            S  S                                  +A L    C H      V++ 
Sbjct: 330 TSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH-----TVFDQ 384

Query: 459 QPQ--TEHYGCMVDLFGRAGLIREALDLIKSMP----LVPDAFVW----------GALLG 502
            P+  T  +  +V  + + GL  EA+D    M      +P+   W          GAL  
Sbjct: 385 LPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444

Query: 503 ACKIHAKV 510
             KIHAK+
Sbjct: 445 GMKIHAKL 452


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 174/377 (46%), Positives = 248/377 (65%), Gaps = 2/377 (0%)

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           A +KL D+  G K+H     N F     VF+ N L+ MY  CG+  SA K+F+ M  +N+
Sbjct: 4   AIAKLMDVREGEKVHSIAIRNGFESL--VFVQNTLVHMYAACGHAESAHKLFELMAERNL 61

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           V+WNS+I G    G+  EAL +FR M   G++PD FT+V +L++CA +G L LG+  H Y
Sbjct: 62  VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 121

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           + K  ++ +   GNAL+D+YAKCG I QA  VF  M+ + V S+T++IVGLA++G   +A
Sbjct: 122 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 181

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           L++F E+ + G+ P E+TFVGVL ACSH G+V+EG  +F  M   Y + P+ EHYGCMVD
Sbjct: 182 LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVD 241

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           L GRAGL+++A + I++MP+ P+A VW  LLGAC IH  + L E+    L++ EP+  G 
Sbjct: 242 LLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGD 301

Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
           Y+L++N+Y+S+ RW +  K+R+ M    VKKTPG SLVE+    +EF  GD+SHP+T EI
Sbjct: 302 YVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEI 361

Query: 591 YKLLDEIMHQSKNHGYI 607
           Y  L EI    K  GY+
Sbjct: 362 YVKLAEITKLLKLEGYV 378



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 172/339 (50%), Gaps = 54/339 (15%)

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           +R G++VH+ +++    S V+V NTL+ +YA CG  ++ HKLF       A+R+LV+W +
Sbjct: 11  VREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFEL----MAERNLVTWNS 66

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           +I  Y     P EA+  F +M    + PDG  +V +LSAC++LG L+LG + H Y+    
Sbjct: 67  VINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV--K 124

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
             L  ++   NAL+D+Y KCG+I  A KVFDEM  K+VVSW S+I GL   G  KEAL++
Sbjct: 125 VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALEL 184

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F+ ++  GL P + T V VL +C++                                   
Sbjct: 185 FKELERKGLMPSEITFVGVLYACSH----------------------------------- 209

Query: 373 CGRIDQAFGVFRSMK-----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           CG +D+ F  F+ MK        +  Y  M+  L   G   +A +    M    ++P+ V
Sbjct: 210 CGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMP---MQPNAV 266

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
            +  +L AC+  G +  G     +++R   LQ + +H G
Sbjct: 267 VWRTLLGACTIHGHLALG-----EVARAQLLQLEPKHSG 300



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 12/270 (4%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N  P EA+ L+REM ++G+ P+ +T+  +L AC +  +L +G++ H Y +K  L  N++ 
Sbjct: 74  NGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHA 133

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ LYA CG I+  HK+F   +    ++ +VSWT+LI       +  EA+  F ++ 
Sbjct: 134 GNALLDLYAKCGSIRQAHKVFDEME----EKSVVSWTSLIVGLAVNGFGKEALELFKELE 189

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  L P  +  V VL ACS  G +  G    + + +  + + P +  +  ++D+  + G 
Sbjct: 190 RKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKE-EYGIVPKIEHYGCMVDLLGRAGL 248

Query: 275 IPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD---DFTLVC 330
           +  A +    MP++ N V W +++   T  G    AL    R Q L L+P    D+ L+ 
Sbjct: 249 VKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHL--ALGEVARAQLLQLEPKHSGDYVLLS 306

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDG 360
            L + +   W ++ K   T L +    T G
Sbjct: 307 NLYA-SEQRWSDVHKVRRTMLREGVKKTPG 335



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           LY K  S+ + +++ +   +   V   + I+    N    EA+ L++E+  KGL+P+  T
Sbjct: 140 LYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEIT 199

Query: 120 LPYVLKACWQSQSLRVG-QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
              VL AC     +  G         +  ++  +  +  ++ L    GL+K  H+   F 
Sbjct: 200 FVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHE---FI 256

Query: 179 QHPQAQRDLVSWTTLIQA 196
           Q+   Q + V W TL+ A
Sbjct: 257 QNMPMQPNAVVWRTLLGA 274


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 181/507 (35%), Positives = 284/507 (56%), Gaps = 6/507 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           ++I L+REM+  G+  ++ T+  VL A  + Q L+VG  +   ++K       YV   L+
Sbjct: 192 DSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLI 251

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY+ CG +     LF     P    DL+++  +I  +        ++  F ++  +  R
Sbjct: 252 SLYSKCGDVNTARLLFRRINRP----DLIAYNAMISGFTANGGTECSVKLFRELLFSGER 307

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
                +V ++   S  G L L   IH +   +   L+P V    A   +Y K   I  AR
Sbjct: 308 VSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTV--STAFTAIYNKLNEIDLAR 365

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +FDE P K VV+WN+MI+G T  G  + A+ +F+ M      P+  T+  +L++CA +G
Sbjct: 366 HLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLG 425

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L  GKWVH  +   ++  + ++  ALVDMYAKCG I +A+ +F SM  ++  ++  MI 
Sbjct: 426 SLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIF 485

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G  +HG   +AL +++EM  +G  P  VTF+ VL ACSHAGLV EG + F +M   Y ++
Sbjct: 486 GYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIE 545

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  EHY CMVD+ GR+G + +AL+ IK MP+ P   VWG LLGAC IH   ++A +  E 
Sbjct: 546 PLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASER 605

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L   +P   G Y+L++NIYS +  + +A  +R+ +K+RK+ K+PGC+L+EV G  + F  
Sbjct: 606 LFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVS 665

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           GD+SH    +IY  L+++  + +  GY
Sbjct: 666 GDRSHSHATDIYAKLEKLTGKMREMGY 692



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 148/569 (26%), Positives = 252/569 (44%), Gaps = 58/569 (10%)

Query: 31  LESSKSVGQLKQFHAFIIKTG------SPQHQTQILYDKIISLSRGNEIENLSLQNPQVY 84
           +  + +   L Q HA  I  G      +    TQ L+D   S +R       S+  P ++
Sbjct: 19  INKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFD--FSATRHARALFFSVPKPDIF 76

Query: 85  LYNFIIQCLS-NANPLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           L+N +++  S N +P  +I+LY  +     L P+ +T  + + AC   + L +   +HA+
Sbjct: 77  LFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML---LHAH 133

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
           S+     SNV+V + L+ LY  C   + V+    F   P  +RD V W T+I   VK   
Sbjct: 134 SIIDGYGSNVFVGSALVDLY--CKFSRVVYARKVFDGMP--ERDTVLWNTMINGLVKNCC 189

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             ++I  F +M    +R D   +  VL A ++L +L +G+ I        F      ++ 
Sbjct: 190 FDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCD--YVL 247

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
             LI +Y KCG++ +AR +F  +   +++++N+MI+G T  G  + ++ +FR +   G +
Sbjct: 248 TGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGER 307

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
               T+V ++   +  G L L   +H +  K+ I  +  +  A   +Y K   ID A  +
Sbjct: 308 VSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHL 367

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F     + V ++ AMI G   +G    A+ +F EM +    P+ VT   +LSAC+  G +
Sbjct: 368 FDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSL 427

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP------------- 489
             G K    + +  NL+P       +VD++ + G I EA  L  SM              
Sbjct: 428 SFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFG 486

Query: 490 ---------------------LVPDAFVWGALLGACKIHAKVELAEIVMENLV---RFEP 525
                                  P A  + ++L AC     V   E +  N+V   R EP
Sbjct: 487 YGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEP 546

Query: 526 EGDGAYILMTNIYSSKNRWKEALKLRKKM 554
             +  Y  M +I     + ++AL+  KKM
Sbjct: 547 LIE-HYACMVDILGRSGQLEKALEFIKKM 574



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 135/311 (43%), Gaps = 25/311 (8%)

Query: 7   VASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLK------------QFHAFIIKTG--- 51
            A+G     +  F++L  L    R+ SS  VG +               H F +K+G   
Sbjct: 286 TANGGTECSVKLFREL--LFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIIL 343

Query: 52  SPQHQTQI--LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREML 109
           +P   T    +Y+K+  +     + + S +   V     I     N +   AI+L++EM+
Sbjct: 344 NPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMM 403

Query: 110 IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIK 169
                PN  T+  +L AC Q  SL  G+ VH       L  N+YV   L+ +YA CG I 
Sbjct: 404 KTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNIS 463

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
              +LF       ++++ V+W T+I  Y    Y  EA+  + +M      P  +  + VL
Sbjct: 464 EAWQLF----DSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVL 519

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK- 288
            ACS  G +  G +I   +  N + + P +  +  ++D+  + G +  A +   +MPV+ 
Sbjct: 520 YACSHAGLVGEGEEIFHNMV-NKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEP 578

Query: 289 NVVSWNSMIAG 299
               W +++  
Sbjct: 579 GPAVWGTLLGA 589


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 185/514 (35%), Positives = 300/514 (58%), Gaps = 6/514 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N N   A+ +   M  +G+  +T T+  +L  C QS  +  G  +H + +K  L S+V+V
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ +Y+  G ++    +F   +     RDLVSW ++I AY + + P+ A+  F  M 
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQME----VRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ 315

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              +RPD + +V + S  S+L D  +   I  ++    + L  DV I NAL++MY K G 
Sbjct: 316 LGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREW-LDKDVVIGNALVNMYAKLGY 374

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLN 333
           +  A  VFD++P K+ +SWN+++ G T  G   EA+D +  M+      P+  T V ++ 
Sbjct: 375 MNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIP 434

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           + +++G L+ G  +H  L KN +  D F+   L+D+Y KCGR++ A  +F  +       
Sbjct: 435 AYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP 494

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           + A+I  L IHG+  +AL +F +M    ++ D +TFV +LSACSH+GLV+EG K F  M 
Sbjct: 495 WNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQ 554

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           + Y ++P  +HYGCMVDL GRAG + +A +L+++MP+ PDA +WGALL ACKI+   EL 
Sbjct: 555 KEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELG 614

Query: 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
            +  + L+  + E  G Y+L++NIY++  +W+  +K+R   ++R ++KTPG S V V  +
Sbjct: 615 TLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSK 674

Query: 574 FYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              F  G+++HPK  EIYK L  +  + K+ GY+
Sbjct: 675 AEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYV 708



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 212/403 (52%), Gaps = 13/403 (3%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L P+ YT P +LKAC    SL  G++VH    K     +V+V  +L+ LY+  G++   H
Sbjct: 120 LRPDFYTFPPILKAC---VSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAH 176

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
           K+F         +D+ SW  +I  + +      A+     M    ++ D + +  +L  C
Sbjct: 177 KVF----VDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVC 232

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           ++  D+  G+ IH ++  +   L  DVF+ NALI+MY K G +  A+ VFD+M V+++VS
Sbjct: 233 AQSDDVINGVLIHLHVLKH--GLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS 290

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WNS+IA          AL  F+ MQ  G++PD  T+V + +  + +    + + +  ++ 
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 353 KNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
           +   ++ D  IGNALV+MYAK G ++ A  VF  +  +D  S+  ++ G   +G A +A+
Sbjct: 351 RREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAI 410

Query: 412 DIFSEMSQV-GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           D ++ M +     P++ T+V ++ A SH G +++G K    + +  +L        C++D
Sbjct: 411 DAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIK-NSLYLDVFVATCLID 469

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           L+G+ G + +A+ L   +P    +  W A++ +  IH + E A
Sbjct: 470 LYGKCGRLEDAMSLFYEIPR-DTSVPWNAIIASLGIHGRGEEA 511



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 192/428 (44%), Gaps = 68/428 (15%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +++HA  +      N+ +   L+ LY   G I      F +      ++++ SW ++I A
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH----KKNIFSWNSIISA 94

Query: 197 YVKMDYPTEA---ILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           YV+     EA   +   F MC   +LRPD      +L AC  L D   G K+H  +    
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMG 151

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           F    DVF+  +L+ +Y + G +  A KVF +MPVK+V SWN+MI+G    G    AL +
Sbjct: 152 FE--DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV 209

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
             RM+G G+K D  T+  +L  CA    +  G  +H ++ K+ +++D F+ NAL++MY+K
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK 269

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
            GR+  A  VF  M+ RD+ S+ ++I     +     AL  F  M   GI PD +T V +
Sbjct: 270 FGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329

Query: 433 LSACS----------------------------------HAGLVEEGCKHFLDMSRVYNL 458
            S  S                                  +A L    C H      V++ 
Sbjct: 330 TSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH-----TVFDQ 384

Query: 459 QPQ--TEHYGCMVDLFGRAGLIREALDLIKSMP----LVPDAFVW----------GALLG 502
            P+  T  +  +V  + + GL  EA+D    M      +P+   W          GAL  
Sbjct: 385 LPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444

Query: 503 ACKIHAKV 510
             KIHAK+
Sbjct: 445 GMKIHAKL 452


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 181/502 (36%), Positives = 289/502 (57%), Gaps = 16/502 (3%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           PN  +    L+   + ++L   +QVHA+ + T L+ + Y    L R+  +   I   H L
Sbjct: 4   PNPSSNHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTY---PLSRILLISSTIVFTHAL 60

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD--MCQANLRPDGMILVIVLSAC 232
             F   P     +  + TLI +   +   T    S +   +    L+P+G     +  AC
Sbjct: 61  SIFNHIPNPT--IFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKAC 118

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
                L  G  +H ++       + D F+  AL++ Y KCG + + R +F+++   ++ S
Sbjct: 119 GSQPWLRHGRALHTHVL-KFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLAS 177

Query: 293 WNSMIAGLTHRGQF--------KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           WNS+++   H             E L +F  MQ   +K ++ TLV ++++CA +G L  G
Sbjct: 178 WNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQG 237

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
            W H Y+ K+++  + F+G AL+DMY+KCG +D A  +F  +  RD   Y AMI G AIH
Sbjct: 238 AWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIH 297

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G   +ALD+F +M+  G+ PD+VT V  + +CSH GLVEEGC  F  M  VY ++P+ EH
Sbjct: 298 GYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEH 357

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           YGC+VDL GRAG +REA + + +MP+ P+A +W +LLGA ++H  +E+ E+V+++L++ E
Sbjct: 358 YGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLE 417

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           PE  G Y+L++N+Y+S NRW +  ++RK MK+  + K PG SLVEV G  +EF  GDK+H
Sbjct: 418 PETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTH 477

Query: 585 PKTLEIYKLLDEIMHQSKNHGY 606
           P++ EIY  L+E+  +   +G+
Sbjct: 478 PRSKEIYLKLEEMSRRLHEYGH 499



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 190/366 (51%), Gaps = 24/366 (6%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQI----LYDKIISLSRGNEIENLSLQNPQVYLY 86
           LE  K++  LKQ HA +I TG   H   +    L    I  +    I N  + NP ++LY
Sbjct: 16  LEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFN-HIPNPTIFLY 74

Query: 87  NFIIQCLSNANPLEAIA--LYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           N +I  L+N  P   IA  LY  +L    L PN +T P + KAC     LR G+ +H + 
Sbjct: 75  NTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHV 134

Query: 144 MK-TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV---- 198
           +K      + +V   L+  YA CG + A   LF+    P    DL SW +++ AYV    
Sbjct: 135 LKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKP----DLASWNSILSAYVHNSG 190

Query: 199 ----KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
                +    E +  F +M ++ ++ + + LV ++SAC++LG LS G   H Y+  +  N
Sbjct: 191 AICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKH--N 248

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           L  + F+  ALIDMY KCG +  A ++FD++P ++ + +N+MI G    G   +ALD+F+
Sbjct: 249 LKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFK 308

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKC 373
           +M   GL PDD TLV  + SC+++G +E G  V   + + + +         LVD+  + 
Sbjct: 309 KMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRA 368

Query: 374 GRIDQA 379
           GR+ +A
Sbjct: 369 GRLREA 374



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 6/227 (2%)

Query: 82  QVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
             Y++N    C   +  LE + L+ EM    +  N  TL  ++ AC +  +L  G   H 
Sbjct: 183 SAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHV 242

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           Y +K  L  N +V   L+ +Y+ CG +    +LF    H    RD + +  +I  +    
Sbjct: 243 YVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPH----RDTLCYNAMIGGFAIHG 298

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           Y  +A+  F  M    L PD + LV+ + +CS +G +  G  +   + +  + + P +  
Sbjct: 299 YGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEV-YGVEPKLEH 357

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFK 307
           +  L+D+  + G +  A +    MP+K N V W S++      G  +
Sbjct: 358 YGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLE 404


>gi|357116863|ref|XP_003560196.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 528

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 196/446 (43%), Positives = 267/446 (59%), Gaps = 17/446 (3%)

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +HA+ +K   L    V + L+ LY  CG       LF  R  P    D+VSWT ++  + 
Sbjct: 77  LHAHVVKLGCLDRRRVRDGLVALYLACGQGAVARALFE-RGAP----DVVSWTAMVTGHT 131

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           ++    EA   F  M                +  +  GDL L  + HR + D    L  D
Sbjct: 132 RLGLFEEAAALFLAMADGVAVDAVAAAAAFAAC-AGAGDLGLARETHRRVLDAGVAL--D 188

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEM-PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           V   NALIDMY KCG+  +AR+ F  M P KNVVSWN+MIA     G  +EAL  FR MQ
Sbjct: 189 VVACNALIDMYAKCGDAAAARRCFRRMLPAKNVVSWNTMIAACARSGDTREALSWFREMQ 248

Query: 318 GLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
             G ++PDD T V VL +CA++G L+ G+WVH Y+   H      +GNAL+DMYAKCG +
Sbjct: 249 RSGCVRPDDATFVAVLGACADLGALDAGRWVHAYMMGRHTKAV-VVGNALLDMYAKCGAV 307

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           D A  VF +M  RDVY+YT+MI GLA+HG+  +AL + ++M + G+ P+ VTF+GVLSAC
Sbjct: 308 DGAKEVFDAMPRRDVYTYTSMISGLAMHGRGQEALALLADMRRAGVRPNAVTFLGVLSAC 367

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
            HAGLVEEG  HF  +     + P  EHYGC+VD+ GRAG + EA +L+  MP  PDA +
Sbjct: 368 CHAGLVEEGLLHFNAIPESLGVAPGIEHYGCVVDMLGRAGRLDEAEELVARMPARPDALI 427

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGD----GAYILMTNIYSSKNRWKEALKLRK 552
           WG+LL AC+ H  V  AE VM  +   + +GD    G Y+LM+N+Y+SK R  +A++LRK
Sbjct: 428 WGSLLSACRAHGHVARAERVMRRMA--DVDGDLADAGDYVLMSNMYASKGRHGKAVQLRK 485

Query: 553 KMKERKVKKTPGCSLVEVYGEFYEFR 578
           +M+  ++ K PGCSL+E+ G  +EFR
Sbjct: 486 QMRRGRMDKVPGCSLIEIDGVVHEFR 511



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 148/291 (50%), Gaps = 9/291 (3%)

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           L + ++ H   +   +  +V   N L+ +YA CG   A  + F         +++VSW T
Sbjct: 170 LGLARETHRRVLDAGVALDVVACNALIDMYAKCGDAAAARRCFRRM---LPAKNVVSWNT 226

Query: 193 LIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
           +I A  +     EA+  F +M ++  +RPD    V VL AC+ LG L  G  +H Y+   
Sbjct: 227 MIAACARSGDTREALSWFREMQRSGCVRPDDATFVAVLGACADLGALDAGRWVHAYMMGR 286

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
           H   +  V + NAL+DMY KCG +  A++VFD MP ++V ++ SMI+GL   G+ +EAL 
Sbjct: 287 H---TKAVVVGNALLDMYAKCGAVDGAKEVFDAMPRRDVYTYTSMISGLAMHGRGQEALA 343

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMY 370
           +   M+  G++P+  T + VL++C + G +E G      + ++     G      +VDM 
Sbjct: 344 LLADMRRAGVRPNAVTFLGVLSACCHAGLVEEGLLHFNAIPESLGVAPGIEHYGCVVDML 403

Query: 371 AKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            + GR+D+A  +   M  R D   + +++     HG   +A  +   M+ V
Sbjct: 404 GRAGRLDEAEELVARMPARPDALIWGSLLSACRAHGHVARAERVMRRMADV 454


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 206/640 (32%), Positives = 331/640 (51%), Gaps = 62/640 (9%)

Query: 19  FQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGS-----PQHQTQILYDKIISLSRGNEI 73
            Q  SL H       S S   L   HA  +K GS     P +    LY K  +++   ++
Sbjct: 291 LQSCSLYH----FTLSNSPPPLGTLHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKL 346

Query: 74  -ENLSLQNPQVYLYNFIIQCLSNANPLEAI-ALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
            + +  +N Q +    +I   + A   E +  L+REM  KG  PN YTL  VLK C    
Sbjct: 347 FDEIPQRNTQTW--TILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDN 404

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------------- 176
           +L++G+ VHA+ ++  +  +V + N+++ LY  C + +   +LF                
Sbjct: 405 NLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIG 464

Query: 177 --------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
                         FR+ P   +D+VSW T++   ++  Y   A+   + M +       
Sbjct: 465 AYLRAGDVEKSLDMFRRLPY--KDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSA 522

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
           +   I L   S L  + LG ++H  +    F    D FI ++L++MY KCG +  A  + 
Sbjct: 523 VTFSIALILASSLSHVELGRQLHGMVLK--FGFDSDGFIRSSLVEMYCKCGRMDKASIIL 580

Query: 283 DEMPVK----------------NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
            ++P+                  +VSW SM++G    G++++ L  FR M    +  D  
Sbjct: 581 RDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIR 640

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T+  ++++CAN G LE G+ VH Y+ K     D ++G++L+DMY+K G +D A+ VFR  
Sbjct: 641 TVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQS 700

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
              ++  +T+MI G A+HG+   A+ +F EM   GI P+EVTF+GVL+ACSHAGL+EEGC
Sbjct: 701 NEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGC 760

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           ++F  M   Y + P  EH   MVDL+GRAG + +  + I    +     VW + L +C++
Sbjct: 761 RYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRL 820

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H  VE+ + V E L++  P   GAY+L++N+ +S +RW EA ++R  M +R VKK PG S
Sbjct: 821 HKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQS 880

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            +++  + + F  GD+SHP+  EIY  LD ++ + K  GY
Sbjct: 881 WIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGY 920


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 180/506 (35%), Positives = 294/506 (58%), Gaps = 43/506 (8%)

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           LK C++   L+   ++HA+ +K +L  + ++   ++      G +     LF    HP  
Sbjct: 17  LKNCFKITQLK---KIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHP-- 71

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDM---CQANLRPDGMILVIVLSACSKLGDLSL 240
             ++ ++  +I+ Y    + + AI  F  M      ++ PD      V+ +C+ +    L
Sbjct: 72  --NIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRL 129

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP------------------------ 276
           G+++H  +    F         NALIDMY K G++                         
Sbjct: 130 GMQVHGLVYK--FGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGY 187

Query: 277 -------SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
                  SAR++FD+MPV+ +VSW +MI G    G + +ALD+FR MQ +G++PD+ +++
Sbjct: 188 VKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISII 247

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            VL +CA +G LE+GKW+H Y DKN       I NAL++MYAKCG ID+A+ +F  +  +
Sbjct: 248 AVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEK 307

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           DV S++ MI GLA HGK ++A+ +F EM +V + P+E+TF+GVL ACSH GL +EG K+F
Sbjct: 308 DVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYF 367

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
             MS  Y+++P+ EHYGC++DL GR+G + +ALD I  MP+ PD+ +W +LL +C+IH  
Sbjct: 368 DVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRN 427

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           +++A I ++ L+  EPE  G Y+L+ N+Y+   +W++   +RK ++ +++KKTPG S +E
Sbjct: 428 LQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIE 487

Query: 570 VYGEFYEFRKGDKSHPKTLEIYKLLD 595
           V     EF   D S P + E++ +L+
Sbjct: 488 VNNVVQEFVSSDDSKPFSQEVFWILE 513



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 206/444 (46%), Gaps = 63/444 (14%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS-----------LQ 79
           L++   + QLK+ HA ++K    Q  +  L  K++     +  +NL            L 
Sbjct: 17  LKNCFKITQLKKIHAHVVKLSLSQ--SNFLVTKML-----DSCDNLGHVSYATLLFKQLL 69

Query: 80  NPQVYLYNFIIQCLS-NANPLEAIALYREMLI---KGLLPNTYTLPYVLKACWQSQSLRV 135
           +P ++ YN II+  + N +   AI+++ +ML      + P+ +T P+V+K+C      R+
Sbjct: 70  HPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRL 129

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G QVH    K     +    N L+ +Y   G +    K+F    H    RD++SW +LI 
Sbjct: 130 GMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSH----RDVISWNSLIF 185

Query: 196 AYVKM-----------DYPTEAILS--------------------FFDMCQANLRPDGMI 224
            YVK+           D P   I+S                    F +M    + PD + 
Sbjct: 186 GYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEIS 245

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           ++ VL AC++LG L +G  IH Y   N F       I NALI+MY KCG I  A  +FD+
Sbjct: 246 IIAVLPACAQLGALEVGKWIHMYADKNGFLRKTG--ICNALIEMYAKCGCIDEAWNLFDQ 303

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG-WLEL 343
           +  K+V+SW++MI GL + G+  EA+ +F  M  + + P++ T + VL +C++ G W E 
Sbjct: 304 LVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEG 363

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLA 402
            K+        HI  +      L+D+  + G + QA      M  + D   + +++    
Sbjct: 364 LKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCR 423

Query: 403 IHGKAWKALDIFSEMSQVGIEPDE 426
           IH     A+    ++ +  +EP+E
Sbjct: 424 IHRNLQIAVIAVKQLME--LEPEE 445



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 128/248 (51%), Gaps = 12/248 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ ++REM + G+ P+  ++  VL AC Q  +L VG+ +H Y+ K   L    + N L+
Sbjct: 226 DALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALI 285

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I     LF        ++D++SW+T+I          EAI  F +MC+  + 
Sbjct: 286 EMYAKCGCIDEAWNLF----DQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVA 341

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  + VL ACS  G    G+K    ++ + +++ P++  +  LID+  + G +  A 
Sbjct: 342 PNEITFLGVLLACSHTGLWDEGLKYFDVMSAS-YHIEPEIEHYGCLIDLLGRSGCLGQAL 400

Query: 280 KVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
               +MP+K +   WNS+++        + A+   +++  + L+P++     +L   AN+
Sbjct: 401 DTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQL--MELEPEESGNYVLL---ANM 455

Query: 339 GWLELGKW 346
            + E GKW
Sbjct: 456 -YAEHGKW 462


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 197/592 (33%), Positives = 319/592 (53%), Gaps = 46/592 (7%)

Query: 60  LYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIK-GLLPN 116
           +Y +  SLS   ++ + +S+ +  V  +N II+  +    P  A+ ++  M  + G  P+
Sbjct: 171 MYSRCRSLSDARKVFDEMSVWD--VVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPD 228

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH---- 172
             TL  VL  C    +  +G+Q+H +++ + ++ N++V N L+ +YA CG++   +    
Sbjct: 229 NITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFS 288

Query: 173 ---------------------------KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
                                      +LF   Q  + + D+V+W+  I  Y +     E
Sbjct: 289 NMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYE 348

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL-----SPDVF 260
           A+     M  + ++P+ + L+ VLS C+ +G L  G +IH Y      +L       +  
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENM 408

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVK--NVVSWNSMIAGLTHRGQFKEALDIFRRM-- 316
           + N LIDMY KC  + +AR +FD +  K  +VV+W  MI G +  G   +AL++   M  
Sbjct: 409 VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG-FIGNALVDMYAKCGR 375
           +    +P+ FT+ C L +CA++  L +GK +H Y  +N  N    F+ N L+DMYAKCG 
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGS 528

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           I  A  VF +M  ++  ++T+++ G  +HG   +AL IF EM ++G + D VT + VL A
Sbjct: 529 ISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYA 588

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           CSH+G++++G ++F  M  V+ + P  EHY C+VDL GRAG +  AL LI+ MP+ P   
Sbjct: 589 CSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPV 648

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           VW A L  C+IH KVEL E   E +       DG+Y L++N+Y++  RWK+  ++R  M+
Sbjct: 649 VWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMR 708

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            + VKK PGCS VE       F  GDK+HP   EIY++L + M + K+ GY+
Sbjct: 709 HKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYV 760



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 174/585 (29%), Positives = 282/585 (48%), Gaps = 62/585 (10%)

Query: 4   PLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFH----AFIIKTGSPQHQTQI 59
           P   A   +Y  ++ F   +     P +   K++ Q+K  H    +F I T +       
Sbjct: 8   PNAAAKSHQYIKVSLFSTSAPEITPPFIHKCKTISQVKLIHQKLLSFGILTLNLTSHLIS 67

Query: 60  LYDKIISLSRG-NEIENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNT 117
            Y  +  LS   + +      +  VY +N +I+    N    + + L+  M      P+ 
Sbjct: 68  TYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDN 127

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
           YT P+V KAC +  S+R G+  HA S+ T  +SNV+V N L+ +Y+ C  +    K+F  
Sbjct: 128 YTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVF-- 185

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLG 236
                +  D+VSW ++I++Y K+  P  A+  F  M  +   RPD + LV VL  C+ LG
Sbjct: 186 --DEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
             SLG ++H +   +   +  ++F+ N L+DMY KCG +  A  VF  M VK+VVSWN+M
Sbjct: 244 THSLGKQLHCFAVTS--EMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAM 301

Query: 297 IAGLTHRGQFKEALDIFRRMQ---------------------GL--------------GL 321
           +AG +  G+F++A+ +F +MQ                     GL              G+
Sbjct: 302 VAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTY-------LDKNHINTDGFIGNALVDMYAKCG 374
           KP++ TL+ VL+ CA++G L  GK +H Y       L KN    +  + N L+DMYAKC 
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCK 421

Query: 375 RIDQAFGVFRSM--KCRDVYSYTAMIVGLAIHGKAWKALDIFSEM--SQVGIEPDEVTFV 430
           ++D A  +F S+  K RDV ++T MI G + HG A KAL++ SEM        P+  T  
Sbjct: 422 KVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481

Query: 431 GVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
             L AC+    +  G + H   +    N  P      C++D++ + G I +A  +  +M 
Sbjct: 482 CALVACASLAALRIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGSISDARLVFDNM- 539

Query: 490 LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           +  +   W +L+    +H   E A  + + + R   + DG  +L+
Sbjct: 540 MAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLV 584



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 131/300 (43%), Gaps = 41/300 (13%)

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKN--VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           LI  Y+  G +  A  +    P  +  V  WNS+I      G   + L +F  M  L   
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD++T   V  +C  I  +  G+  H         ++ F+GNALV MY++C  +  A  V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS-QVGIEPDEVTFVGVLSACSHAGL 441
           F  M   DV S+ ++I   A  GK   AL++FS M+ + G  PD +T V VL  C+  G 
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
              G +  L    V +   Q    G C+VD++ + G++ EA  +  +M  V D   W A+
Sbjct: 245 HSLGKQ--LHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMS-VKDVVSWNAM 301

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           +                                    YS   R+++A++L +KM+E K+K
Sbjct: 302 VAG----------------------------------YSQIGRFEDAVRLFEKMQEEKIK 327


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 193/512 (37%), Positives = 296/512 (57%), Gaps = 16/512 (3%)

Query: 99  LEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           +E+I ++R+++ +     +T TL  +L A  + Q LR+G Q+H+ + KT   S+ YV   
Sbjct: 202 VESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTG 261

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD---MC 214
            + LY+ CG IK    LF   + P    D+V++  +I  Y   +  TE  LS F    + 
Sbjct: 262 FISLYSKCGKIKMGSALFREFRKP----DIVAYNAMIHGYTS-NGETELSLSLFKELMLS 316

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
            A LR   ++ ++ +S     G L L   IH Y   ++F LS    +  AL  +Y K   
Sbjct: 317 GARLRSSTLVSLVPVS-----GHLMLIYAIHGYCLKSNF-LS-HASVSTALTTVYSKLNE 369

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I SARK+FDE P K++ SWN+MI+G T  G  ++A+ +FR MQ     P+  T+ C+L++
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSA 429

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA +G L LGKWVH  +      +  ++  AL+ MYAKCG I +A  +F  M  ++  ++
Sbjct: 430 CAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTW 489

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
             MI G  +HG+  +AL+IF EM   GI P  VTF+ VL ACSHAGLV+EG + F  M  
Sbjct: 490 NTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIH 549

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y  +P  +HY CMVD+ GRAG ++ AL  I++M + P + VW  LLGAC+IH    LA 
Sbjct: 550 RYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLAR 609

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
            V E L   +P+  G ++L++NI+S+   + +A  +R+  K+RK+ K PG +L+E+    
Sbjct: 610 TVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETP 669

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           + F  GD+SHP+  EIY+ L+++  + +  GY
Sbjct: 670 HVFTSGDQSHPQVKEIYEKLEKLEGKMREAGY 701



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 227/489 (46%), Gaps = 22/489 (4%)

Query: 34  SKSVGQLKQFHAFIIKTGSPQ------HQTQILYDKIISLSRGNEIENLSLQNPQVYLYN 87
           S S+  L Q HA II  G           TQ L D + ++    +I  LS+Q P V+L+N
Sbjct: 30  STSISHLAQTHAQIILHGFRNDISLLTKLTQRLSD-LGAIYYARDI-FLSVQRPDVFLFN 87

Query: 88  FIIQCLS-NANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
            +++  S N +P  +++++  +     L PN+ T  + + A    +  R G+ +H  ++ 
Sbjct: 88  VLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVV 147

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
               S + + + ++++Y     ++   K+F        ++D + W T+I  Y K +   E
Sbjct: 148 DGCDSELLLGSNIVKMYFKFWRVEDARKVF----DRMPEKDTILWNTMISGYRKNEMYVE 203

Query: 206 AILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           +I  F D+  ++  R D   L+ +L A ++L +L LG++IH   T          ++   
Sbjct: 204 SIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKT--GCYSHDYVLTG 261

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
            I +Y KCG I     +F E    ++V++N+MI G T  G+ + +L +F+ +   G +  
Sbjct: 262 FISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLR 321

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             TLV ++      G L L   +H Y  K++  +   +  AL  +Y+K   I+ A  +F 
Sbjct: 322 SSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFD 378

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
               + + S+ AMI G   +G    A+ +F EM +    P+ VT   +LSAC+  G +  
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSL 438

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G K   D+ R  + +        ++ ++ + G I EA  L   M    +   W  ++   
Sbjct: 439 G-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMT-KKNEVTWNTMISGY 496

Query: 505 KIHAKVELA 513
            +H + + A
Sbjct: 497 GLHGQGQEA 505



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/464 (22%), Positives = 196/464 (42%), Gaps = 43/464 (9%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
           +S S+    Q HA  +     +++ +   L +  +  G I     +F   Q P    D+ 
Sbjct: 29  RSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRP----DVF 84

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIH-R 246
            +  L++ +   + P  ++  F  + ++ +L+P+       +SA S   D   G  IH +
Sbjct: 85  LFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQ 144

Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
            + D       ++ + + ++ MY K   +  ARKVFD MP K+ + WN+MI+G      +
Sbjct: 145 AVVDG---CDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMY 201

Query: 307 KEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
            E++ +FR +      + D  TL+ +L + A +  L LG  +H+   K    +  ++   
Sbjct: 202 VESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTG 261

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
            + +Y+KCG+I     +FR  +  D+ +Y AMI G   +G+   +L +F E+   G    
Sbjct: 262 FISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLR 321

Query: 426 EVTFVGVLSACSHAGL---VEEGC--KHFLDMSRV--------------------YNLQP 460
             T V ++    H  L   +   C   +FL  + V                    ++  P
Sbjct: 322 SSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESP 381

Query: 461 QTE--HYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEI 515
           +     +  M+  + + GL  +A+ L + M      P+      +L AC     + L + 
Sbjct: 382 EKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKW 441

Query: 516 VMENLVRFEPEGDGAYI--LMTNIYSSKNRWKEALKLRKKMKER 557
           V  +LVR        Y+   +  +Y+      EA +L   M ++
Sbjct: 442 V-HDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK 484


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/451 (40%), Positives = 259/451 (57%), Gaps = 36/451 (7%)

Query: 190 WTTLIQAYVKMDYPTE---AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
           + T I+ + +   P     ++L F  M   +L P+      +   CS      LG + H 
Sbjct: 57  FNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHG 116

Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE---------------------- 284
            +  N F +  DVF+ N++I  Y  CG +  AR VFDE                      
Sbjct: 117 MVIKNSFEM--DVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNI 174

Query: 285 ---------MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
                    M  +N +SWN MI+G    GQ KEAL +FR MQ L  +P+   LV VL++C
Sbjct: 175 LEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSAC 234

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           + +G L+ G WVH Y+ K  +  D  +  AL+DMYAKCG ID A   F + + RDV +YT
Sbjct: 235 SQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYT 294

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           A I GLA++G + +AL +F +M   GI PD V+++ VL ACSHAG VE+G  +F  MS V
Sbjct: 295 AAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDV 354

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + ++P+ +HY CMVDL GRAGL+ EA   + SMP+ PD  +WGALLGAC+++   E+ + 
Sbjct: 355 HGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQR 414

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
           V   LV  +   DG YIL++NIY+   + ++A ++RK M+ RKV + PGCSL+EV G  +
Sbjct: 415 VGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVH 474

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           EF  GD+SH KT EIY + +EI+ + K  GY
Sbjct: 475 EFFSGDRSHEKTEEIYLMWEEIVKEIKKFGY 505



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 173/360 (48%), Gaps = 35/360 (9%)

Query: 81  PQVYLYNFIIQCLSNANP----LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           P V+L+N  I+  S A      L ++ L+  M +  L PN +T  ++ + C    +  +G
Sbjct: 52  PTVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLG 111

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH---------------- 180
           +Q H   +K +   +V+V N+++R Y+VCG +     +F                     
Sbjct: 112 RQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRN 171

Query: 181 -----------PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
                         +R+ +SW  +I  Y +   P EA+  F +M   +  P+  ILV VL
Sbjct: 172 GNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVL 231

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           SACS+LG L  G  +H YI      +  D  +  ALIDMY KCG+I  A + F     ++
Sbjct: 232 SACSQLGALDHGCWVHCYIGKKCVRV--DSILSAALIDMYAKCGSIDLAMQAFSTSRKRD 289

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVH 348
           V ++ + I+GL   G  +EAL +F +M+G G+ PD  + + VL +C++ GW+E G  +  
Sbjct: 290 VSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFA 349

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKA 407
           +  D + I  +      +VD+  + G +++A     SM  + D   + A++    ++G A
Sbjct: 350 SMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNA 409



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 143/331 (43%), Gaps = 47/331 (14%)

Query: 67  LSRGNEIENLSLQNPQV----YLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLP 121
           +  GN +E LSL +         +N +I   + N  P EA+AL+REM +    PN+  L 
Sbjct: 169 IRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILV 228

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
            VL AC Q  +L  G  VH Y  K  +  +  +   L+ +YA CG I    + F   +  
Sbjct: 229 SVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSR-- 286

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
             +RD+ ++T  I          EA+  F  M    + PDG+  + VL ACS  G +  G
Sbjct: 287 --KRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKG 344

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
                 ++D H  + P++  +  ++D+  + G +  A K    MP+              
Sbjct: 345 FHYFASMSDVH-GIRPELDHYACMVDLLGRAGLLEEAEKFVASMPI-------------- 389

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG- 360
                               KPD+     +L +C   G  E+G+ V + L ++  N DG 
Sbjct: 390 --------------------KPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGR 429

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           +I   L ++YA+  + + A  V ++M+ R V
Sbjct: 430 YI--LLSNIYAESMKGEDAEQVRKTMRRRKV 458



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 34/192 (17%)

Query: 289 NVVSWNSMIAGLTHR---GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
            V  +N+ I G +     G    ++ +F RM  L L P++FT   +   C+N    +LG+
Sbjct: 53  TVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGR 112

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRID---------------------------- 377
             H  + KN    D F+ N+++  Y+ CGR++                            
Sbjct: 113 QFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNG 172

Query: 378 ---QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
              +A  +F  M  R+  S+  MI G A +G+  +AL +F EM  +  EP+    V VLS
Sbjct: 173 NILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLS 232

Query: 435 ACSHAGLVEEGC 446
           ACS  G ++ GC
Sbjct: 233 ACSQLGALDHGC 244


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 192/549 (34%), Positives = 306/549 (55%), Gaps = 8/549 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTY 118
           +Y K   +S   ++ N +L NP    YN II   +  +  L+A+ +++ +    L  +  
Sbjct: 283 MYAKCDRMSDAWKVFN-TLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEI 341

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           +L   L AC   +    G Q+H  ++K  L  N+ V NT++ +Y  CG +     +F   
Sbjct: 342 SLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFD-- 399

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                +RD VSW  +I A+ + +   + +  F  M ++ + PD      V+ AC+    L
Sbjct: 400 --DMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQAL 457

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
           + G++IH  I  +   L  D F+ +AL+DMY KCG +  A K+ D +  K  VSWNS+I+
Sbjct: 458 NYGMEIHGRIVKSGMGL--DWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIIS 515

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G + + Q + A   F +M  +G+ PD+FT   VL+ CAN+  +ELGK +H  + K ++++
Sbjct: 516 GFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHS 575

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           D +I + LVDMY+KCG +  +  +F     RD  +++AMI   A HG   +A+ +F EM 
Sbjct: 576 DVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQ 635

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
            + ++P+   F+ VL AC+H G V++G  +F  M   Y L P  EHY CMVDL GR+  +
Sbjct: 636 LLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQV 695

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            EAL LI+SM    D  +W  LL  CK+   VE+AE    +L++ +P+   AY+L+ N+Y
Sbjct: 696 NEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVY 755

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           ++   W E  K+R  MK  K+KK PGCS +EV  E + F  GDK+HP++ EIY+    ++
Sbjct: 756 ANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYEQTHLLV 815

Query: 599 HQSKNHGYI 607
            + K  GY+
Sbjct: 816 DEMKWAGYV 824



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 139/508 (27%), Positives = 235/508 (46%), Gaps = 46/508 (9%)

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
           +T  ++L+ C   ++L  G+Q HA  + T+ +  +YV N L++ Y     +    K+F  
Sbjct: 7   FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 178 RQHPQA---------------------------QRDLVSWTTLIQAYVKMDYPTEAILSF 210
             H                              +RD+VSW +L+  Y+      ++I  F
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             M    +  D     +VL ACS + D  LG+++H       F    DV   +AL+DMY 
Sbjct: 127 VRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFE--NDVVTGSALVDMYS 184

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KC  +  A ++F EMP +N+V W+++IAG     +F E L +F+ M  +G+     T   
Sbjct: 185 KCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYAS 244

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           V  SCA +   +LG  +H +  K+    D  IG A +DMYAKC R+  A+ VF ++    
Sbjct: 245 VFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPP 304

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HF 449
             SY A+IVG A   +  KAL+IF  + +  +  DE++  G L+ACS      EG + H 
Sbjct: 305 RQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHG 364

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           L +           +   ++D++G+ G + EA  +   M    DA  W A++ A + + +
Sbjct: 365 LAVKCGLGFNICVAN--TILDMYGKCGALVEACTIFDDMER-RDAVSWNAIIAAHEQNEE 421

Query: 510 VELAEIVMENLVR--FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT----- 562
           +     +  +++R   EP+ D  Y  +    +     ++AL    ++  R VK       
Sbjct: 422 IVKTLSLFVSMLRSTMEPD-DFTYGSVVKACAG----QQALNYGMEIHGRIVKSGMGLDW 476

Query: 563 -PGCSLVEVYGEFYEFRKGDKSHPKTLE 589
             G +LV++YG+     + +K H +  E
Sbjct: 477 FVGSALVDMYGKCGMLMEAEKIHDRLEE 504


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 178/453 (39%), Positives = 273/453 (60%), Gaps = 33/453 (7%)

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
           +FH  Q+P        + +LI+A      P EA+  +  M Q+ L+PD M    V+ AC+
Sbjct: 122 IFHHLQNPPPSL----YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN 177

Query: 234 KLGDLSLGIKIHRYITDNHF---------------------------NL--SPDVFIHNA 264
           +      G+ +H ++  + F                           NL  + DV   NA
Sbjct: 178 ESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNA 237

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           +ID Y+K   +  AR VFD M  ++V+SWN+MI G    G+  EAL +F +M+ +G+KP 
Sbjct: 238 MIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPT 297

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
           + T+V +L++CA++G L+ G  +HTY++ N I  +  +G ALVDMYAKCG+I  A  VF 
Sbjct: 298 EATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFN 357

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
           +M+ +DV ++  +I G+AIHG   +A  +F EM + G+EP+++TFV +LSACSHAG+V+E
Sbjct: 358 AMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDE 417

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G K    MS  Y ++P+ EHYGC++DL  RAG + EA++LI +MP+ P+    GALLG C
Sbjct: 418 GQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGC 477

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           +IH   EL E+V + L+  +P   G YIL++NIY++  +W +A K+R  MK   + K PG
Sbjct: 478 RIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPG 537

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
            S++E+ G  + F  GD SHP++ +IY+ L+EI
Sbjct: 538 VSVIELKGMVHRFVAGDWSHPESNKIYEKLNEI 570



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 191/358 (53%), Gaps = 32/358 (8%)

Query: 78  LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           LQNP   LYN +I+ LS++  PLEA+ LY  ML  GL P+  T P+V+KAC +S     G
Sbjct: 126 LQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFG 185

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH----------------FRQH 180
             VH + +K+    + Y+ ++L+ LYA    + A  +LF+                + +H
Sbjct: 186 LLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKH 245

Query: 181 PQAQ-----------RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
            +             RD++SW T+I  Y     P EA+  F  M    ++P    +V +L
Sbjct: 246 VEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLL 305

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           SAC+ LG L  G+ +H YI DN   +  +  +  AL+DMY KCG I  A +VF+ M  K+
Sbjct: 306 SACAHLGALDKGLHLHTYINDNRIEV--NSIVGTALVDMYAKCGKISLATQVFNAMESKD 363

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           V++WN++IAG+   G  KEA  +F+ M+  G++P+D T V +L++C++ G ++ G+ +  
Sbjct: 364 VLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLD 423

Query: 350 YLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
            +  ++ I         ++D+ A+ G +++A  +  +M    +  +  A++ G  IHG
Sbjct: 424 CMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHG 481



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 111/227 (48%), Gaps = 8/227 (3%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P EA+AL+ +M   G+ P   T+  +L AC    +L  G  +H Y     +  N  V   
Sbjct: 279 PNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA 338

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +YA CG I    ++F+  +     +D+++W T+I          EA   F +M +A 
Sbjct: 339 LVDMYAKCGKISLATQVFNAME----SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAG 394

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           + P+ +  V +LSACS  G +  G K+   ++ + + + P V  +  +ID+  + G +  
Sbjct: 395 VEPNDITFVAILSACSHAGMVDEGQKLLDCMSSS-YGIEPKVEHYGCVIDLLARAGFLEE 453

Query: 278 ARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           A ++   MP++ N  +  +++ G    G F+    + +R+  + L+P
Sbjct: 454 AMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRL--INLQP 498


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 194/519 (37%), Positives = 298/519 (57%), Gaps = 45/519 (8%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL--IKAVHKLFHFRQHPQAQRD 186
           + ++ R  +Q+HA+ +KT  + +      L++   +     IK   K F    HP    +
Sbjct: 24  RCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHP----N 79

Query: 187 LVSWTTLIQAYVKMDY-------PTEAILSFFDMCQANL-RPDGMILVIVLSACSKLGDL 238
             SW T+I+A    D          EA+L F  M    L  P+      VL AC+KL  +
Sbjct: 80  CFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARI 139

Query: 239 SLGIKIHRYIT-------------------------DNHF-----NLSPDVFIHNALIDM 268
             G ++H ++                          D H       L  +V + N +ID 
Sbjct: 140 EEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDG 199

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y++ G++ ++R++FD MP K+VVSWN MI+G    G FKEA+++F  MQ   + P+  TL
Sbjct: 200 YVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTL 259

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
           V VL + + +G +ELGKWVH + +KN I  D  +G+AL+DMY+KCG ID+A  VF  ++ 
Sbjct: 260 VSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRN 319

Query: 389 R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
           + +  +++A+I GLA+HG+A  ALD F  M Q G+ P +V ++GVLSACSHAGLVEEG  
Sbjct: 320 KKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRS 379

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
            +  M  +  L P+ EHYGCMVDL GRAG + EA  LI +MP+ PD  +  ALLGACK+H
Sbjct: 380 IYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMH 439

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
             +E+ E + + L+ + P   G+Y+ ++N+++S+  W+  +K+R KMKE  ++K PGCS 
Sbjct: 440 GNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSW 499

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           +E+ G  +EF   D SHP+   I+ +L+E+  + ++ GY
Sbjct: 500 IELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGY 538



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 219/432 (50%), Gaps = 66/432 (15%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTGSPQH---QTQILYDKIISLSRGNEIENL-----SLQN 80
           P++   K+   LKQ HA  IKTG   H     ++L  K ++LS   EI+        + +
Sbjct: 20  PQISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELL--KFLTLSTQREIKYARKFFSQIHH 77

Query: 81  PQVYLYNFIIQCLS--------NANPLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQ 131
           P  + +N II+ L+        + N LEA+  +  ML  GL+ PN +T P VLKAC +  
Sbjct: 78  PNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLA 137

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
            +  G+Q+H + +K  L+S+ +V + L+R+Y +CG +K  H LF+     + + ++V W 
Sbjct: 138 RIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFY---QTRLEGNVVLWN 194

Query: 192 TLIQAYVKM-------------------------------DYPTEAILSFFDMCQANLRP 220
            +I  YV+M                                +  EAI  F DM   ++ P
Sbjct: 195 VMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPP 254

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           + + LV VL A S+LG + LG  +H +   N   +  D  + +ALIDMY KCG+I  A +
Sbjct: 255 NYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEI--DDVLGSALIDMYSKCGSIDKAVQ 312

Query: 281 VFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           VF+ +   KN ++W+++I GL   G+ ++ALD F RMQ  G+ P D   + VL++C++ G
Sbjct: 313 VFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAG 372

Query: 340 WLELGKWVHTYLDKNHINTDGFIG-----NALVDMYAKCGRIDQAFGVFRSMKCR-DVYS 393
            +E G+ ++ ++    +N  G +        +VD+  + G +++A  +  +M  + D   
Sbjct: 373 LVEEGRSIYYHM----VNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVI 428

Query: 394 YTAMIVGLAIHG 405
             A++    +HG
Sbjct: 429 LKALLGACKMHG 440


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 189/509 (37%), Positives = 300/509 (58%), Gaps = 8/509 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+  Y EM   G  P+   +  ++ A  +S +   G Q+HAY+MK  L S++ V N+L+
Sbjct: 366 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLV 425

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA    +K +  +F         +D+VSWTT+I  + +    + A+  F ++    + 
Sbjct: 426 DMYAKFCSMKYMDCIFD----KMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGID 481

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            D M++  +L ACS L  +S   +IH YI     +   D+ + N ++D+Y +CGN+  A 
Sbjct: 482 LDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS---DLVLQNGIVDVYGECGNVDYAA 538

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++F+ +  K+VVSW SMI+   H G   EAL++F  M+  G++PD  +LV +L++ A++ 
Sbjct: 539 RMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLS 598

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ GK +H +L +     +G + + LVDMYA+CG ++++  VF  ++ +D+  +T+MI 
Sbjct: 599 ALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMIN 658

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
              +HG    A+D+F  M    I PD + FV VL ACSH+GL+ EG +    M   Y L+
Sbjct: 659 AYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLE 718

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  EHY C+VDL GRA  + EA   +K M + P A VW ALLGAC+IH+  EL EI  + 
Sbjct: 719 PWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQK 778

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L+  +PE  G Y+L++N+YS++ RWK+   +R +MK   +KK PGCS +EV  + + F  
Sbjct: 779 LLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMA 838

Query: 580 GDKSHPKTLEIYKLLDEIMHQ-SKNHGYI 607
            DKSHP++ EIY  L +I  + +K  GY+
Sbjct: 839 RDKSHPQSYEIYSKLSQITEKLAKEGGYV 867



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 247/484 (51%), Gaps = 21/484 (4%)

Query: 33  SSKSVGQLKQFHAFIIKTGSP------QHQTQILYDKIISLSRGNEIENLSLQNPQVYLY 86
           S K++ + +Q HA +I + +         +   +Y K   L    ++ +  + +  ++ +
Sbjct: 90  SKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFD-GMPHKTIFTW 148

Query: 87  NFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           N +I   ++N  PL ++ LYREM + G+  +  T P +LKAC   +  R G +VH  ++K
Sbjct: 149 NAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIK 208

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
              +S V+V N+++ +Y  C  +    +LF   + P+ + D+VSW ++I AY       E
Sbjct: 209 EGYVSIVFVANSIVGMYTKCNDLNGARQLFD--RMPE-KEDVVSWNSMISAYSSNGQSIE 265

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           A+  F +M +A+L P+    V  L AC     +  G+ IH  +  + + +  +VF+ NAL
Sbjct: 266 ALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI--NVFVANAL 323

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           I MY + G +  A  +F  M   + +SWNSM++G    G + EAL  +  M+  G KPD 
Sbjct: 324 IAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDL 383

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
             ++ ++ + A  G    G  +H Y  KN +++D  +GN+LVDMYAK   +     +F  
Sbjct: 384 VAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDK 443

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE-- 443
           M  +DV S+T +I G A +G   +AL++F E+   GI+ D +    +L ACS   L+   
Sbjct: 444 MPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSV 503

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           +    ++    + +L  Q      +VD++G  G +  A  + + +    D   W +++ +
Sbjct: 504 KEIHSYIIRKGLSDLVLQNG----IVDVYGECGNVDYAARMFELIEF-KDVVSWTSMI-S 557

Query: 504 CKIH 507
           C +H
Sbjct: 558 CYVH 561



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 201/384 (52%), Gaps = 36/384 (9%)

Query: 79  QNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLL---------------PNTYTL--- 120
           QNP + +  F ++      P+E  +L RE+  +G +               P+ ++L   
Sbjct: 28  QNPPLKISKFPLK------PVETPSL-REICKRGSVNEAFQSLTDLFANQSPSQFSLDEA 80

Query: 121 -PYVLKACWQSQSLRVGQQVHAYSMKT-ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
              VL+ C   ++L  GQQVHA+ + + AL ++V++   L+ +Y  CG +    KLF   
Sbjct: 81  YSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGM 140

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
            H    + + +W  +I AYV    P  ++  + +M  + +  D      +L AC  L D 
Sbjct: 141 PH----KTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDR 196

Query: 239 SLGIKIHRY-ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSM 296
             G ++H   I + + ++   VF+ N+++ MY KC ++  AR++FD MP K +VVSWNSM
Sbjct: 197 RYGAEVHGLAIKEGYVSI---VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSM 253

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           I+  +  GQ  EAL +F  MQ   L P+ +T V  L +C +  +++ G ++H  + K+  
Sbjct: 254 ISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSY 313

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
             + F+ NAL+ MYA+ G++ +A  +F +M   D  S+ +M+ G   +G   +AL  + E
Sbjct: 314 YINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHE 373

Query: 417 MSQVGIEPDEVTFVGVLSACSHAG 440
           M   G +PD V  + +++A + +G
Sbjct: 374 MRDAGQKPDLVAVISIIAASARSG 397


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 199/582 (34%), Positives = 319/582 (54%), Gaps = 30/582 (5%)

Query: 41  KQFHAFIIKTG---SPQHQTQI--LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQC-LS 94
           KQ H+ +I  G   SP   T +  +Y K   +     +         V+ YN II   +S
Sbjct: 31  KQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVS 90

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    +    Y++M ++G++P+ YT P V++ C +   ++   ++H   +K  L  +V+V
Sbjct: 91  NGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVK---KIHGCLLKMGLELDVFV 147

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+  Y   G ++   K+F       + RD+V W  +I  Y K+    EA+  F  M 
Sbjct: 148 GSALVNTYLKNGSMEDAQKVFG----ELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMH 203

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              + P    +  +LS  +  GDL  G  +H  +    ++    V + NALIDMY KC +
Sbjct: 204 VKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYD--SGVSVSNALIDMYGKCKH 261

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I  A  +F+ +  K++ SWNS+I+     G     L +F +M G G+ PD  T+  VL +
Sbjct: 262 IGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPA 321

Query: 335 CANIGWLELGKWVHTYLDKNHINTDG--------FIGNALVDMYAKCGRIDQAFGVFRSM 386
           C+++  L  G+ +H Y+  N +  D          + NA++DMYAKCG ++ A  +F SM
Sbjct: 322 CSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSM 381

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             +DV S+  MI+G  +HG A +AL +FS+M +   +P+EVT VGVLSAC+HAG V  G 
Sbjct: 382 SKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGR 441

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
                M   + + P  EHY C++D+ GRAG + +A ++++ MP+  +  VW ALLGAC++
Sbjct: 442 LFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRL 501

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H   ELAEI    +++ EPE  G+Y+LM+N+Y    R++E L++RK MKE+ VKKTPGCS
Sbjct: 502 HGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCS 561

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
            +E+    + FR GD++H +       L+ + +Q  + G+IL
Sbjct: 562 WIELKDGVHVFRTGDRTHSE-------LNALTNQLCDIGFIL 596



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 193/404 (47%), Gaps = 18/404 (4%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           +L N       L++C   Q+L  G+Q+H+  +      +     +L+ +Y+ CG +    
Sbjct: 7   MLNNVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAI 66

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
            +F+    P  +R++ ++  +I  +V     ++    +  M    + PD      V+  C
Sbjct: 67  LVFY---DPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTC 123

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
            ++ ++    KIH  +      L  DVF+ +AL++ YLK G++  A+KVF E+ +++VV 
Sbjct: 124 CEVMEVK---KIHGCLLK--MGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVL 178

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WN+MI G    G   EAL++FRRM   G+ P  FT+  +L+  A+ G L+ GK VH  + 
Sbjct: 179 WNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVM 238

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K   ++   + NAL+DMY KC  I  A  +F  +  +D++S+ ++I      G     L 
Sbjct: 239 KMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLR 298

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH-------- 464
           +F +M   GI PD VT   VL ACSH   +  G +       +  L    E+        
Sbjct: 299 LFDKMLGSGILPDLVTITTVLPACSHLAALMHG-REIHGYMIINGLGKDDENGAVDNLLV 357

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
              ++D++ + G +  AL +  SM    D   W  ++    +H 
Sbjct: 358 SNAVMDMYAKCGSMNNALKIFDSMS-KKDVASWNIMIMGYGMHG 400


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 192/537 (35%), Positives = 306/537 (56%), Gaps = 10/537 (1%)

Query: 60  LYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNT 117
           +Y K+  + +G  + E +  +N  V  +  II  L +A   +E +  + EM    +  ++
Sbjct: 168 MYMKVGKIEQGCRVFEKMMTRN--VVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDS 225

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
           +T    LKA   S  L  G+ +H  ++K     + +V NTL  +Y  CG    V +LF  
Sbjct: 226 HTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEK 285

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
            + P    D+VSWTTLI  YV+M     A+ +F  M ++ + P+      V+S+C+ L  
Sbjct: 286 MRMP----DVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAA 341

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
              G +IH ++      L   + + N++I +Y KCG + SA  VF  +  K+++SW+++I
Sbjct: 342 AKWGEQIHGHVL--RLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTII 399

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
           +  +  G  KEA D    M+  G KP++F L  VL+ C ++  LE GK VH +L    I+
Sbjct: 400 SVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGID 459

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            +  + +A++ MY+KCG + +A  +F  MK  D+ S+TAMI G A HG + +A+++F ++
Sbjct: 460 HEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKI 519

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
           S VG++PD V F+GVL+AC+HAG+V+ G  +F+ M+ VY + P  EHYGC++DL  RAG 
Sbjct: 520 SSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGR 579

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
           + EA  +I+SMP   D  VW  LL AC++H  V+      E L++ +P   G +I + NI
Sbjct: 580 LSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANI 639

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           Y++K RWKEA  +RK MK + V K  G S V V  +   F  GD++HP++  I  +L
Sbjct: 640 YAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDQLNAFVAGDQAHPQSEHITTVL 696



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 235/496 (47%), Gaps = 44/496 (8%)

Query: 96  ANPLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           ++  EA+ L+  M +  G   + + +   LKAC    ++  G+ +H +S+K+ L+ +V+V
Sbjct: 102 SDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFV 161

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +Y   G I+   ++F         R++VSWT +I   V   Y  E +L F +M 
Sbjct: 162 SSALIDMYMKVGKIEQGCRVF----EKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMW 217

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           ++ +  D     I L A +    L  G  IH       F+ S   F+ N L  MY KCG 
Sbjct: 218 RSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESS--FVINTLATMYNKCGK 275

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
                ++F++M + +VVSW ++I+     G+ + A++ F+RM+   + P+ +T   V++S
Sbjct: 276 PDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISS 335

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CAN+   + G+ +H ++ +  +     + N+++ +Y+KCG +  A  VF  +  +D+ S+
Sbjct: 336 CANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISW 395

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG--------- 445
           + +I   +  G A +A D  S M + G +P+E     VLS C    L+E+G         
Sbjct: 396 STIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLC 455

Query: 446 -------------------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDL 484
                              C    + S+++N     +   +  M++ +   G  +EA++L
Sbjct: 456 IGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINL 515

Query: 485 ---IKSMPLVPDAFVWGALLGACKIHAKVELA---EIVMENLVRFEPEGDGAYILMTNIY 538
              I S+ L PD  ++  +L AC     V+L     ++M N+ R  P  +  Y  + ++ 
Sbjct: 516 FEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKE-HYGCLIDLL 574

Query: 539 SSKNRWKEALKLRKKM 554
               R  EA  + + M
Sbjct: 575 CRAGRLSEAEHIIRSM 590



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 149/302 (49%), Gaps = 10/302 (3%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGI 242
            RD +SWTTLI  YV      EA++ F +M      + D  ++ + L AC+   ++  G 
Sbjct: 85  HRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNICFGE 144

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            +H +   +   L   VF+ +ALIDMY+K G I    +VF++M  +NVVSW ++IAGL H
Sbjct: 145 LLHGFSVKS--GLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVH 202

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
            G   E L  F  M    +  D  T    L + A+   L  GK +HT   K   +   F+
Sbjct: 203 AGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFV 262

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
            N L  MY KCG+ D    +F  M+  DV S+T +I      G+   A++ F  M +  +
Sbjct: 263 INTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYV 322

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            P++ TF  V+S+C++    + G +   H L +  V  L         ++ L+ + GL++
Sbjct: 323 SPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANS----IITLYSKCGLLK 378

Query: 480 EA 481
            A
Sbjct: 379 SA 380



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 3/240 (1%)

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GLGL 321
           N+ +   +K G +  AR +FD+M  ++ +SW ++IAG  +     EAL +F  M    G 
Sbjct: 61  NSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGP 120

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           + D F +   L +CA    +  G+ +H +  K+ +    F+ +AL+DMY K G+I+Q   
Sbjct: 121 QRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCR 180

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF  M  R+V S+TA+I GL   G   + L  FSEM +  +  D  TF   L A + + L
Sbjct: 181 VFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSL 240

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           +  G K     +        +     +  ++ + G     + L + M + PD   W  L+
Sbjct: 241 LHHG-KAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRM-PDVVSWTTLI 298


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 197/587 (33%), Positives = 328/587 (55%), Gaps = 20/587 (3%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRG-NEIENL-----SLQNPQVYLY 86
           +S  VG  +    F++KTG  +    +    I    +G N  EN       +    V  +
Sbjct: 178 NSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTW 237

Query: 87  NFII-QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
             +I +C+    P EAI  + +M++ G   + +TL  V  AC + ++L +G+Q+H+++++
Sbjct: 238 TLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLHSWAIR 297

Query: 146 TALLSNVYVFNTLMRLYAVC---GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK-MD 201
           + L  +V    +L+ +YA C   G +    K+F   Q       ++SWT LI  Y++  +
Sbjct: 298 SGLADDVEC--SLVDMYAKCSADGSVDDCRKVFDRMQ----DHSVMSWTALITGYMQNCN 351

Query: 202 YPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
             TEAI  F +M  Q ++ P+         AC  + D  +G ++  +       L+ +  
Sbjct: 352 LATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKR--GLASNSS 409

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           + N++I M++KC  +  AR  F+ +  KN+VS+N+ + G      F+ A ++   +    
Sbjct: 410 VSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERE 469

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           L    FT   +L+  AN+G L  G+ +H+ + K  ++ +  + NAL+ MY+KCG ID A 
Sbjct: 470 LGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTAS 529

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  M  R+V S+T+MI G A HG A + L+ F++M++ G++P+EVT+V +LSACSH G
Sbjct: 530 RVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVG 589

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LV EG +HF  M   + ++P+ EHY CMVDL  RAGL+ +A + I +MP   D  VW   
Sbjct: 590 LVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTF 649

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           LGAC++H+  EL ++    ++ F+P    AYI ++NIY+S  +W+E+ ++R+KMKER + 
Sbjct: 650 LGACRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKERNLV 709

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K  GCS +EV  + ++F  GD SHP   +IY  LD ++ + K  GY+
Sbjct: 710 KEGGCSWIEVGDKVHKFYVGDTSHPNAHQIYDELDWLITEIKRCGYV 756



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 229/488 (46%), Gaps = 51/488 (10%)

Query: 60  LYDKIISLSRGNEI-ENLS-LQNPQVYLYNFIIQCL-SNANPLEAIALYREMLIKGLLPN 116
           LY K   L++  ++ E +       V  ++ ++ C  +N    +AI L+ E L  GL+PN
Sbjct: 106 LYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPN 165

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTA-LLSNVYVFNTLMRLYAVC-GLIKAVHKL 174
            Y    V++AC  S  + VG+ +  + MKT    S+V V  +L+ ++       +  +K+
Sbjct: 166 DYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKV 225

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F       ++ ++V+WT +I   ++M +P EAI  F DM  +    D   L  V SAC++
Sbjct: 226 F----DKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAE 281

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC---GNIPSARKVFDEMPVKNVV 291
           L +LSLG ++H +   +   L+ DV    +L+DMY KC   G++   RKVFD M   +V+
Sbjct: 282 LENLSLGRQLHSWAIRS--GLADDV--ECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVM 337

Query: 292 SWNSMIAGLTHRGQF-KEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           SW ++I G         EA+++F  M   G ++P+ FT      +C N+    +GK V  
Sbjct: 338 SWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLG 397

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           +  K  + ++  + N+++ M+ KC R++ A   F S+  +++ SY   + G   +     
Sbjct: 398 HAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEH 457

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------------------CKHFLD 451
           A ++ SE+++  +     TF  +LS  ++ G + +G                  C   + 
Sbjct: 458 AFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALIS 517

Query: 452 M----------SRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMP---LVPDAFV 496
           M          SRV++L        +  M+  F + G     L+    M    + P+   
Sbjct: 518 MYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVT 577

Query: 497 WGALLGAC 504
           + A+L AC
Sbjct: 578 YVAILSAC 585



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 186/359 (51%), Gaps = 13/359 (3%)

Query: 88  FIIQCLSNANPLEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
            I++ L+  +   A++    M   G+ P ++ T   +LK+C +++  R+G+ VHA  ++ 
Sbjct: 32  LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEF 91

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            +  +  ++N+L+ LY+  G +     +F        +RD+VSW+ ++  +       +A
Sbjct: 92  EIEPDSVLYNSLISLYSKSGDLTKAKDVFE-TMGRFGKRDVVSWSAMMACFGNNGREFDA 150

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN-HFNLSPDVFIHNAL 265
           I  F +  +  L P+      V+ ACS    + +G  I  ++    HF    DV +  +L
Sbjct: 151 IKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFE--SDVCVGCSL 208

Query: 266 IDMYLKCGN-IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           IDM++K  N   +A KVFD+M   NVV+W  MI      G  +EA+  F  M   G + D
Sbjct: 209 IDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESD 268

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC---GRIDQAFG 381
            FTL  V ++CA +  L LG+ +H++  ++ +  D  +  +LVDMYAKC   G +D    
Sbjct: 269 KFTLSSVFSACAELENLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRK 326

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGK-AWKALDIFSEM-SQVGIEPDEVTFVGVLSACSH 438
           VF  M+   V S+TA+I G   +   A +A+++FSEM +Q  +EP+  TF     AC +
Sbjct: 327 VFDRMQDHSVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 181/483 (37%), Positives = 291/483 (60%), Gaps = 11/483 (2%)

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC----GLIKAVHKLFHFRQHPQAQRD 186
            SL   +Q+HA+S++  +  +       +  Y V       +   HK+F   + P    +
Sbjct: 28  SSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPI---N 84

Query: 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIH 245
           +  W TLI+ Y ++     A+  + +M  +  + PD      +L A  K+ D+ LG  IH
Sbjct: 85  VFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIH 144

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
             +  + F     +++ N+L+ +Y  CG++ SA KVFD+MP K++V+WNS+I G    G+
Sbjct: 145 SVVIRSGFG--SLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
            +EAL ++  M   G+KPD FT+V +L++CA IG L LGK  H Y+ K  +  +    N 
Sbjct: 203 PEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNV 262

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEP 424
           L+D+YA+CGR+++A  +F  M  ++  S+T++IVGLA++G   +A+++F  M S+ G+ P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLP 322

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
            E+TFVG+L ACSH G+V+EG ++F  MS  Y ++P+ EH+GCMVDL  RAG +++A + 
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
           I  MP+ P+  +W  LLGAC +H   +LAE+    +++ EP   G Y+L++N+Y+S+ RW
Sbjct: 383 ILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRW 442

Query: 545 KEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
            +  K+RK+M    V+K PG SLVEV    +EF  GDKSHP+   IY  L E+  + +  
Sbjct: 443 SDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLE 502

Query: 605 GYI 607
           GY+
Sbjct: 503 GYV 505



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 225/404 (55%), Gaps = 22/404 (5%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQI---LYDKIISL------SRGNEIENLSLQNPQVYLY 86
           S+ +L+Q HAF I+ G      ++   L   ++SL      S  +++ +   +   V+++
Sbjct: 29  SLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIW 88

Query: 87  NFIIQCLSN-ANPLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           N +I+  +   N + A++LYREM   G + P+T+T P++LKA  +   +R+G+ +H+  +
Sbjct: 89  NTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVI 148

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           ++   S +YV N+L+ LYA CG + + +K+F        ++DLV+W ++I  + +   P 
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVF----DKMPEKDLVAWNSVINGFAENGKPE 204

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EA+  + +M    ++PDG  +V +LSAC+K+G L+LG + H Y+      L+ ++   N 
Sbjct: 205 EALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIK--VGLTRNLHSSNV 262

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKP 323
           L+D+Y +CG +  A+ +FDEM  KN VSW S+I GL   G  KEA+++F+ M+   GL P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLP 322

Query: 324 DDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            + T V +L +C++ G ++ G ++     ++  I         +VD+ A+ G++ +A+  
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382

Query: 383 FRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
              M  + +V  +  ++    +HG +   L   + M  + +EP+
Sbjct: 383 ILKMPMQPNVVIWRTLLGACTVHGDS--DLAELARMKILQLEPN 424


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 189/517 (36%), Positives = 297/517 (57%), Gaps = 46/517 (8%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK C     L+   ++HA+ +K +L  + ++   ++ +    G  +  + LF     P 
Sbjct: 20  ILKDCPNIVELK---KIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPN 76

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-----QANLRPDGMILVIVLSACSKLGD 237
           A      +  +I+AY        AI  +  M      +  + PD      V+ +C+ L  
Sbjct: 77  A----FLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMC 132

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
             LG ++H ++    F    +  + N+L++MY+KC ++  A +VF+EM  ++ VSWN++I
Sbjct: 133 YDLGKQVHGHVFK--FGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLI 190

Query: 298 AGLTHRGQFK-------------------------------EALDIFRRMQGLGLKPDDF 326
           +G    GQ +                               +AL+ FRRMQ +G++PD+ 
Sbjct: 191 SGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEI 250

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           +LV VL  CA +G LELGKW+H Y DK     +  + NAL++MYAKCG IDQ   +F  M
Sbjct: 251 SLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQM 310

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
           K RDV S++ MIVGLA HG+A +A+++F EM +  IEP  +TFVG+L+AC+HAGL+ EG 
Sbjct: 311 KERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGL 370

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           ++F  M R YN++P  EHYGC+V+L G +G + +AL+L+K MP  PD+ +WG+LL +C+ 
Sbjct: 371 RYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRS 430

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H  +++A I ME+L+  EP   G Y+L++N+Y+   +W    ++RK M+ + +KKTPGCS
Sbjct: 431 HGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCS 490

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLD-EIMHQSK 602
            +EV     EF  GD S P +  I ++L   +MHQSK
Sbjct: 491 SIEVDNMVQEFASGDDSKPFSKAICRVLKLLVMHQSK 527



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/402 (29%), Positives = 198/402 (49%), Gaps = 52/402 (12%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSR---GNEIENL---SLQNPQ 82
           P L+   ++ +LK+ HA I+K    Q  +  L  K++ +       E  NL    + +P 
Sbjct: 19  PILKDCPNIVELKKIHAHIVKFSLSQ--SSFLVTKMVDVCNHYGETEYANLLFKGVADPN 76

Query: 83  VYLYNFIIQCLS-NANPLEAIALYREML-----IKGLLPNTYTLPYVLKACWQSQSLRVG 136
            +LYN +I+    N   + AI +Y++ML        + P+ +T P+V+K+C       +G
Sbjct: 77  AFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLG 136

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +QVH +  K    SN  V N+L+ +Y  C  +   H++F        +RD VSW TLI  
Sbjct: 137 KQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVF----EEMTERDAVSWNTLISG 192

Query: 197 YVKMD-----------------YPTEAILS--------------FFDMCQANLRPDGMIL 225
           +V++                  +   AI+S              F  M    + PD + L
Sbjct: 193 HVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISL 252

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
           V VL  C++LG L LG  IH Y     F    ++ + NALI+MY KCG+I   R++FD+M
Sbjct: 253 VSVLPDCAQLGALELGKWIHIYADKAGF--LRNICVCNALIEMYAKCGSIDQGRRLFDQM 310

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             ++V+SW++MI GL + G+ +EA+++F+ MQ   ++P   T V +L +CA+ G L  G 
Sbjct: 311 KERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGL 370

Query: 346 WVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSM 386
                + +++    G      LV++    GR+DQA  + + M
Sbjct: 371 RYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKM 412



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 169/406 (41%), Gaps = 78/406 (19%)

Query: 224 ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
           + V +L  C  + +L    KIH +I    F+LS   F+   ++D+    G    A  +F 
Sbjct: 16  MFVPILKDCPNIVELK---KIHAHIVK--FSLSQSSFLVTKMVDVCNHYGETEYANLLFK 70

Query: 284 EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-----LKPDDFTLVCVLNSCANI 338
            +   N   +N+MI    H   +  A+ ++++M G       + PD FT   V+ SCA +
Sbjct: 71  GVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGL 130

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD-------- 390
              +LGK VH ++ K    ++  + N+LV+MY KC  +D A  VF  M  RD        
Sbjct: 131 MCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLI 190

Query: 391 -----------------------VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
                                  ++S+TA++ G A  G    AL+ F  M  VGIEPDE+
Sbjct: 191 SGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEI 250

Query: 428 TFVGVLSACSHAGLVEEG------------------CKHFLDM----------SRVYNLQ 459
           + V VL  C+  G +E G                  C   ++M           R+++  
Sbjct: 251 SLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQM 310

Query: 460 PQTE--HYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAE 514
            + +   +  M+      G  REA++L + M    + P    +  LL AC     +    
Sbjct: 311 KERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGL 370

Query: 515 IVMENLVR---FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
              E++ R    EP G   Y  + N+     R  +AL+L KKM  +
Sbjct: 371 RYFESMKRDYNIEP-GVEHYGCLVNLLGLSGRLDQALELVKKMPRK 415



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 125/248 (50%), Gaps = 12/248 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+  +R M + G+ P+  +L  VL  C Q  +L +G+ +H Y+ K   L N+ V N L+
Sbjct: 232 DALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALI 291

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I    +LF        +RD++SW+T+I          EAI  F +M +A + 
Sbjct: 292 EMYAKCGSIDQGRRLF----DQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIE 347

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P  +  V +L+AC+  G L+ G++    +  + +N+ P V  +  L+++    G +  A 
Sbjct: 348 PSIITFVGLLTACAHAGLLNEGLRYFESMKRD-YNIEPGVEHYGCLVNLLGLSGRLDQAL 406

Query: 280 KVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           ++  +MP K +   W S+++     G  K A+     +  L L+P D     +L++    
Sbjct: 407 ELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHL--LELEPADTGNYVLLSNL--- 461

Query: 339 GWLELGKW 346
            + +LGKW
Sbjct: 462 -YADLGKW 468


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 188/502 (37%), Positives = 297/502 (59%), Gaps = 17/502 (3%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           ML   +LP+  +   +L++C  S   ++G+  H   MK     ++ +   L+  YA  G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILV 226
           +K   ++F        +RD+V+   +I A  K  Y  EA   F +M + N    + MI  
Sbjct: 61  LKCAKRVFM----GMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMI-- 114

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM- 285
              +   KLGD    I   R + D   N   DV   NA+ID Y K   + +A+++F  M 
Sbjct: 115 ---TCYCKLGD----INSARLMFD--CNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMG 165

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             +N V+WN+MI+     G+F  A+ +F++MQ   +KP + T+V +L++CA++G L++G+
Sbjct: 166 SARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGE 225

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
           W+H Y+    +  D  +GNAL+DMY KCG ++ A  VF  +  ++++ + ++IVGL ++G
Sbjct: 226 WIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNG 285

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
           +  +A+  F  M + GI+PD VTFVG+LS CSH+GL+  G ++F +M  VY L+P  EHY
Sbjct: 286 RGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHY 345

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
           GCMVDL GRAG ++EAL+LI++MP+ P++ V G+LL AC+IH   +L E V + L+  +P
Sbjct: 346 GCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDP 405

Query: 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585
              G Y+ ++N+Y+S +RW +    RK M +R V KTPGCS +EV    +EF  GD SHP
Sbjct: 406 CDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHP 465

Query: 586 KTLEIYKLLDEIMHQSKNHGYI 607
           +  +I   LDEI  + K  G++
Sbjct: 466 QFTQINAFLDEIAKELKGQGHV 487



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 102/201 (50%), Gaps = 13/201 (6%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           AI+++++M  + + P   T+  +L AC    +L +G+ +H Y     L  +V + N L+ 
Sbjct: 189 AISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALID 248

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y  CG ++A   +F    H  +++++  W ++I          EAI +F  M +  ++P
Sbjct: 249 MYCKCGALEAAIDVF----HGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKP 304

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITD--NHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           DG+  V +LS CS  G LS G    RY ++    + L P V  +  ++D+  + G +  A
Sbjct: 305 DGVTFVGILSGCSHSGLLSAG---QRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEA 361

Query: 279 RKVFDEMPVKNVVSWNSMIAG 299
            ++   MP+K     NSM+ G
Sbjct: 362 LELIRAMPMKP----NSMVLG 378


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 195/582 (33%), Positives = 308/582 (52%), Gaps = 40/582 (6%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTY 118
           +Y K   +S   EI    ++   V  +  IIQ  +    L EA  LY +ML  G+ PN  
Sbjct: 223 MYSKCGEISLACEIFQ-KMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAV 281

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T   +L +C   ++L  G+++H++  +  L ++V V N L+ +Y  C  I+   + F   
Sbjct: 282 TFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFD-- 339

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDY-PTEAILSFFDMCQANLR----PDGMILVIVLSACS 233
               ++RD++SW+ +I  Y +  Y   E++   F + +   R    P+ +  + +L ACS
Sbjct: 340 --RMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACS 397

Query: 234 KLGDLSLGIKIH-----------RYITDNHFNL------------------SPDVFIHNA 264
             G L  G +IH           R +    FN+                  + +V    +
Sbjct: 398 VHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWAS 457

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L+ MY+KCG++ SA KVF EM  +NVVSWN MIAG    G   +  ++   M+  G +PD
Sbjct: 458 LLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPD 517

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             T++ +L +C  +  LE GK VH    K  + +D  +  +L+ MY+KCG + +A  VF 
Sbjct: 518 RVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFD 577

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            +  RD  ++ AM+ G   HG   +A+D+F  M +  + P+E+TF  V+SAC  AGLV+E
Sbjct: 578 KISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQE 637

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G + F  M   + ++P  +HYGCMVDL GRAG ++EA + I+ MP  PD  VW ALLGAC
Sbjct: 638 GREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGAC 697

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           K H  V+LAE    +++R EP     Y+ ++NIY+   RW ++ K+RK M ++ +KK  G
Sbjct: 698 KSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRG 757

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            S +E+ G  + F   D +HP+   I+  L+ +  + K  GY
Sbjct: 758 ESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGY 799



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 151/532 (28%), Positives = 241/532 (45%), Gaps = 79/532 (14%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N +P +A   +  M    + PN  T   +LKAC     L   +++H     + + ++V V
Sbjct: 157 NNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAV 216

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
              L+ +Y+ CG I    ++F        +R++VSWT +IQA  +     EA   +  M 
Sbjct: 217 ATALITMYSKCGEISLACEIF----QKMKERNVVSWTAIIQANAQHRKLNEAFELYEKML 272

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           QA + P+ +  V +L++C+    L+ G +IH +I++    L  DV + NALI MY KC  
Sbjct: 273 QAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISER--GLETDVVVANALITMYCKCNC 330

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRG-QFKEALD----IFRRMQGLGLKPDDFTLV 329
           I  AR+ FD M  ++V+SW++MIAG    G Q KE+LD    +  RM+  G+ P+  T +
Sbjct: 331 IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFM 390

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI---DQAFG----- 381
            +L +C+  G LE G+ +H  + K    +D  +  A+ +MYAKCG I   +Q F      
Sbjct: 391 SILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK 450

Query: 382 -----------------------VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
                                  VF  M  R+V S+  MI G A  G   K  ++ S M 
Sbjct: 451 NVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMK 510

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEG----------------------------CKHFL 450
             G +PD VT + +L AC     +E G                            C    
Sbjct: 511 VEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVT 570

Query: 451 DMSRVYN--LQPQTEHYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACK 505
           +   V++      T  +  M+  +G+ G+  EA+DL K M    + P+   + A++ AC 
Sbjct: 571 EARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACG 630

Query: 506 IHAKV-ELAEI--VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
               V E  EI  +M+   R +P G   Y  M ++     R +EA +  ++M
Sbjct: 631 RAGLVQEGREIFRIMQEDFRMKP-GKQHYGCMVDLLGRAGRLQEAEEFIQRM 681



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/407 (30%), Positives = 213/407 (52%), Gaps = 13/407 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EAI L   +  +GLL N+ T   +++ C + +    G+ VH    +  L  ++Y+ N+L+
Sbjct: 61  EAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLI 120

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
             Y+  G + +V ++F         RD+V+W+++I AY   ++P +A  +F  M  AN+ 
Sbjct: 121 NFYSKFGDVASVEQVFR----RMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  + +L AC+    L    +IH  +  +   +  DV +  ALI MY KCG I  A 
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKAS--GMETDVAVATALITMYSKCGEISLAC 234

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++F +M  +NVVSW ++I       +  EA +++ +M   G+ P+  T V +LNSC    
Sbjct: 235 EIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPE 294

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L  G+ +H+++ +  + TD  + NAL+ MY KC  I  A   F  M  RDV S++AMI 
Sbjct: 295 ALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIA 354

Query: 400 GLAIHG-KAWKALD----IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           G A  G +  ++LD    +   M + G+ P++VTF+ +L ACS  G +E+G +   ++S+
Sbjct: 355 GYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISK 414

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           V   +        + +++ + G I EA  +   M    +   W +LL
Sbjct: 415 V-GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLL 459



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 185/371 (49%), Gaps = 41/371 (11%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           ++  C+KL     G  +H+ +  +   L+ D+++ N+LI+ Y K G++ S  +VF  M +
Sbjct: 84  IIEHCAKLRRFEDGKMVHKQL--DELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTL 141

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           ++VV+W+SMIA         +A D F RM+   ++P+  T + +L +C N   LE  + +
Sbjct: 142 RDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREI 201

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           HT +  + + TD  +  AL+ MY+KCG I  A  +F+ MK R+V S+TA+I   A H K 
Sbjct: 202 HTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKL 261

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGLVEEG----------- 445
            +A +++ +M Q GI P+ VTFV +L++C+           H+ + E G           
Sbjct: 262 NEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANAL 321

Query: 446 ------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLI-REALD----LIKSM---P 489
                 C    D    ++   + +   +  M+  + ++G   +E+LD    L++ M    
Sbjct: 322 ITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREG 381

Query: 490 LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY-ILMTNIYSSKNRWKEAL 548
           + P+   + ++L AC +H  +E    +   + +   E D +    + N+Y+      EA 
Sbjct: 382 VFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAE 441

Query: 549 KLRKKMKERKV 559
           ++  KM+ + V
Sbjct: 442 QVFSKMENKNV 452



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 113/223 (50%), Gaps = 2/223 (0%)

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           L   G+ KEA+ +   ++  GL  +  T  C++  CA +   E GK VH  LD+  +  D
Sbjct: 53  LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAID 112

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            ++GN+L++ Y+K G +     VFR M  RDV ++++MI   A +    KA D F  M  
Sbjct: 113 IYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD 172

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             IEP+ +TF+ +L AC++  ++E+  +    + +   ++        ++ ++ + G I 
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKA-REIHTVVKASGMETDVAVATALITMYSKCGEIS 231

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
            A ++ + M    +   W A++ A   H K+  A  + E +++
Sbjct: 232 LACEIFQKMK-ERNVVSWTAIIQANAQHRKLNEAFELYEKMLQ 273


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 193/589 (32%), Positives = 327/589 (55%), Gaps = 24/589 (4%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRG-NEIENL-----SLQNPQVYLY 86
           +S  VG  +    F++KTG  +    +    I    +G N  EN       +    V  +
Sbjct: 178 NSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTW 237

Query: 87  NFII-QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
             +I +C+    P EAI  + +M++ G   + +TL  V  AC + ++L +G+Q+H+++++
Sbjct: 238 TLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIR 297

Query: 146 TALLSNVYVFNTLMRLYAVC---GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK-MD 201
           + L+ +V    +L+ +YA C   G +    K+F   +       ++SWT LI  Y+K  +
Sbjct: 298 SGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRME----DHSVMSWTALITGYMKNCN 351

Query: 202 YPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF--NLSPD 258
             TEAI  F +M  Q ++ P+         AC  L D  +G    + +    F   L+ +
Sbjct: 352 LATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVG----KQVLGQAFKRGLASN 407

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             + N++I M++K   +  A++ F+ +  KN+VS+N+ + G      F++A  +   +  
Sbjct: 408 SSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITE 467

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
             L    FT   +L+  AN+G +  G+ +H+ + K  ++ +  + NAL+ MY+KCG ID 
Sbjct: 468 RELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDT 527

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  VF  M+ R+V S+T+MI G A HG A + L+ F++M + G++P+EVT+V +LSACSH
Sbjct: 528 ASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSH 587

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
            GLV EG +HF  M   + ++P+ EHY CMVDL  RAGL+ +A + I +MP   D  VW 
Sbjct: 588 VGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWR 647

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
             LGAC++H+  EL ++    ++  +P    AYI ++NIY+   +W+E+ ++R+KMKER 
Sbjct: 648 TFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERN 707

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + K  GCS +EV  + ++F  GD +HP   +IY  LD ++ + K  GY+
Sbjct: 708 LVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYV 756



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 209/451 (46%), Gaps = 48/451 (10%)

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA-LLSNV 152
           +N   L+AI ++ E L  GL+PN Y    V++AC  S  + VG+    + MKT    S+V
Sbjct: 143 NNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDV 202

Query: 153 YVFNTLMRLYAVC-GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
            V  +L+ ++       +  +K+F       ++ ++V+WT +I   ++M +P EAI  F 
Sbjct: 203 CVGCSLIDMFVKGENSFENAYKVF----DKMSELNVVTWTLMITRCMQMGFPREAIRFFL 258

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
           DM  +    D   L  V SAC++L +LSLG ++H +   +   L  DV    +L+DMY K
Sbjct: 259 DMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS--GLVDDV--ECSLVDMYAK 314

Query: 272 C---GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF-KEALDIFRRMQGLG-LKPDDF 326
           C   G++   RKVFD M   +V+SW ++I G         EA+++F  M   G ++P+ F
Sbjct: 315 CSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHF 374

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T      +C N+    +GK V     K  + ++  + N+++ M+ K  R++ A   F S+
Sbjct: 375 TFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESL 434

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG- 445
             +++ SY   + G   +    +A  + SE+++  +     TF  +LS  ++ G + +G 
Sbjct: 435 SEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGE 494

Query: 446 -----------------CKHFLDM----------SRVYNLQPQTE--HYGCMVDLFGRAG 476
                            C   + M          SRV+N         +  M+  F + G
Sbjct: 495 QIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHG 554

Query: 477 LIREALDLIKSM---PLVPDAFVWGALLGAC 504
                L+    M    + P+   + A+L AC
Sbjct: 555 FAIRVLETFNQMIEEGVKPNEVTYVAILSAC 585



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 183/353 (51%), Gaps = 14/353 (3%)

Query: 95  NANPLE-AIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           NA  L  A++    M   G+ P ++ T   +LK+C +++  R+G+ VHA  ++  +  + 
Sbjct: 38  NAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDS 97

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            ++N+L+ LY+  G       +F   +    +RD+VSW+ ++  Y       +AI  F +
Sbjct: 98  VLYNSLISLYSKSGDSAKAEDVFETMRRF-GKRDVVSWSAMMACYGNNGRELDAIKVFVE 156

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLG-IKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
             +  L P+      V+ ACS    + +G + +   +   HF    DV +  +LIDM++K
Sbjct: 157 FLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHF--ESDVCVGCSLIDMFVK 214

Query: 272 CGN-IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
             N   +A KVFD+M   NVV+W  MI      G  +EA+  F  M   G + D FTL  
Sbjct: 215 GENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSS 274

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC---GRIDQAFGVFRSMK 387
           V ++CA +  L LGK +H++  ++ +  D  +  +LVDMYAKC   G +D    VF  M+
Sbjct: 275 VFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRME 332

Query: 388 CRDVYSYTAMIVGLAIHGK-AWKALDIFSEM-SQVGIEPDEVTFVGVLSACSH 438
              V S+TA+I G   +   A +A+++FSEM +Q  +EP+  TF     AC +
Sbjct: 333 DHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 180/526 (34%), Positives = 304/526 (57%), Gaps = 17/526 (3%)

Query: 89  IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I +C+    P EAI  + +M++ G   + +TL  V  AC + ++L +G+Q+H++++++ L
Sbjct: 241 ITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGL 300

Query: 149 LSNVYVFNTLMRLYAVC---GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK-MDYPT 204
           + +V    +L+ +YA C   G +    K+F   +       ++SWT LI  Y+K  +  T
Sbjct: 301 VDDVEC--SLVDMYAKCSADGSVDDCRKVFDRME----DHSVMSWTALITGYMKNCNLAT 354

Query: 205 EAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF--NLSPDVFI 261
           EAI  F +M  Q ++ P+         AC  L D  +G    + +    F   L+ +  +
Sbjct: 355 EAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVG----KQVLGQAFKRGLASNSSV 410

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            N++I M++K   +  A++ F+ +  KN+VS+N+ + G      F++A  +   +    L
Sbjct: 411 ANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITEREL 470

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
               FT   +L+  AN+G +  G+ +H+ + K  ++ +  + NAL+ MY+KCG ID A  
Sbjct: 471 GVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASR 530

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF  M+ R+V S+T+MI G A HG A + L+ F++M + G++P+EVT+V +LSACSH GL
Sbjct: 531 VFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGL 590

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           V EG +HF  M   + ++P+ EHY CMVDL  RAGL+ +A + I +MP   D  VW   L
Sbjct: 591 VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
           GAC++H+  EL ++    ++  +P    AYI ++NIY+   +W+E+ ++R+KMKER + K
Sbjct: 651 GACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVK 710

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             GCS +EV  + ++F  GD +HP   +IY  LD ++ + K  GY+
Sbjct: 711 EGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYV 756



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 209/451 (46%), Gaps = 48/451 (10%)

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA-LLSNV 152
           +N   L+AI ++ E L  GL+PN Y    V++AC  S  + VG+    + MKT    S+V
Sbjct: 143 NNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDV 202

Query: 153 YVFNTLMRLYAVC-GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
            V  +L+ ++       +  +K+F       ++ ++V+WT +I   ++M +P EAI  F 
Sbjct: 203 CVGCSLIDMFVKGENSFENAYKVF----DKMSELNVVTWTLMITRCMQMGFPREAIRFFL 258

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
           DM  +    D   L  V SAC++L +LSLG ++H +   +   L  DV    +L+DMY K
Sbjct: 259 DMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS--GLVDDV--ECSLVDMYAK 314

Query: 272 C---GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF-KEALDIFRRMQGLG-LKPDDF 326
           C   G++   RKVFD M   +V+SW ++I G         EA+++F  M   G ++P+ F
Sbjct: 315 CSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHF 374

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T      +C N+    +GK V     K  + ++  + N+++ M+ K  R++ A   F S+
Sbjct: 375 TFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESL 434

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG- 445
             +++ SY   + G   +    +A  + SE+++  +     TF  +LS  ++ G + +G 
Sbjct: 435 SEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGE 494

Query: 446 -----------------CKHFLDM----------SRVYNLQPQTE--HYGCMVDLFGRAG 476
                            C   + M          SRV+N         +  M+  F + G
Sbjct: 495 QIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHG 554

Query: 477 LIREALDLIKSM---PLVPDAFVWGALLGAC 504
                L+    M    + P+   + A+L AC
Sbjct: 555 FAIRVLETFNQMIEEGVKPNEVTYVAILSAC 585



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 186/359 (51%), Gaps = 13/359 (3%)

Query: 88  FIIQCLSNANPLEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
            I++ L+  +   A++    M   G+ P ++ T   +LK+C +++  R+G+ VHA  ++ 
Sbjct: 32  LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEF 91

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            +  +  ++N+L+ LY+  G       +F   +    +RD+VSW+ ++  Y       +A
Sbjct: 92  DIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRR-FGKRDVVSWSAMMACYGNNGRELDA 150

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG-IKIHRYITDNHFNLSPDVFIHNAL 265
           I  F +  +  L P+      V+ ACS    + +G + +   +   HF    DV +  +L
Sbjct: 151 IKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFE--SDVCVGCSL 208

Query: 266 IDMYLKCGN-IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           IDM++K  N   +A KVFD+M   NVV+W  MI      G  +EA+  F  M   G + D
Sbjct: 209 IDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESD 268

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC---GRIDQAFG 381
            FTL  V ++CA +  L LGK +H++  ++ +  D  +  +LVDMYAKC   G +D    
Sbjct: 269 KFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRK 326

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGK-AWKALDIFSEM-SQVGIEPDEVTFVGVLSACSH 438
           VF  M+   V S+TA+I G   +   A +A+++FSEM +Q  +EP+  TF     AC +
Sbjct: 327 VFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385


>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
 gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
 gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 531

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 183/505 (36%), Positives = 281/505 (55%), Gaps = 46/505 (9%)

Query: 137 QQVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
             +H   +K  LL    ++   L+  YA  G      +LF   + P+  + LV  T + +
Sbjct: 30  SSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFD--EMPE--QGLVPRTAMAR 85

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL----GIKIHRYITDN 251
           A+V      +AI  F DM    + PD + L + L AC   G  +     G KIH  I  +
Sbjct: 86  AHVASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTS 145

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK----------------------- 288
              + PDVF+   LI +Y +CG +  +R+VFD+MP +                       
Sbjct: 146 --GIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYE 203

Query: 289 --------NVVSWNSMIAGLTHRGQFKEALDIFRRM---QGLGLKPDDFTLVCVLNSCAN 337
                   +VVSWN+++AG    G+ +EAL +FR+M       + P+  T+  +L +CA 
Sbjct: 204 LFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAG 263

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF-RSMKCRDVYSYTA 396
            G LE G WVH Y+++N +N DG++   L+DMY KCG ID A  VF ++ + RD++S+T 
Sbjct: 264 AGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTT 323

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I GLA+HG+A  AL +F  M   GI PD+VT VGVL+AC+H GLV+EG  +F  M   +
Sbjct: 324 VICGLAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKF 383

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            + P+ EHYGCM+DL GR G ++EA  +I++MP+ P+  +WGA L ACK+H  +EL +I 
Sbjct: 384 RITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIA 443

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            E L R +P+     ++++++Y+    W    + R++M   +VKKTPGCS +E+ GE +E
Sbjct: 444 AEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEVHE 503

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQS 601
           F  G   HP+  EI  +L ++  Q+
Sbjct: 504 FVAGGSQHPQYAEICSVLQDVEAQT 528



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 181/371 (48%), Gaps = 41/371 (11%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV----GQQVHAYSMKTAL 148
           +++    +AIA++ +M+  G+ P+   L   L AC  + S       G+++HA  + + +
Sbjct: 88  VASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGI 147

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLF----------------HFRQHPQA--------- 183
             +V+V   L+R+Y  CG +    ++F                 + +H +          
Sbjct: 148 EPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLA 207

Query: 184 --QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN---LRPDGMILVIVLSACSKLGDL 238
             +RD+VSW T++  Y       EA+  F  M   +   + P+   +  +L AC+  G L
Sbjct: 208 MPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCL 267

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMI 297
             GI +H YI  N  N   D ++   LIDMY KCG+I +A +VF++ P K ++ SW ++I
Sbjct: 268 ETGIWVHAYIERNRMN--DDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVI 325

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHI 356
            GL   G+  +AL +F  MQ  G+ PDD TLV VLN+CA+ G ++ G  + ++   K  I
Sbjct: 326 CGLAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRI 385

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFS 415
                    ++D+  + GR+ +A+ + R+M    +   + A +    +HG          
Sbjct: 386 TPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAE 445

Query: 416 EMSQVGIEPDE 426
           E+++  ++PD+
Sbjct: 446 ELTR--LDPDD 454


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 201/572 (35%), Positives = 311/572 (54%), Gaps = 68/572 (11%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI +  +M+ +G+ P  +TL  VL +   ++ +  G++VH++ +K  L  NV V N+L+
Sbjct: 129 KAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLL 188

Query: 160 RLYAVCG---------------------LIKAVH--------KLFHFRQHPQAQRDLVSW 190
            +YA CG                      + A+H         +  F Q   A+RD+V+W
Sbjct: 189 NMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQ--MAERDIVTW 246

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANL-RPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
            ++I  + +  Y   A+  F  M + +L  PD   L  VLSAC+ L  L +G +IH +I 
Sbjct: 247 NSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIV 306

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN-------------------- 289
              F++S  V   NALI MY +CG + +AR++ ++   K+                    
Sbjct: 307 TTGFDISGIVL--NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364

Query: 290 -------------VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
                        VV+W +MI G    G + EA+++FR M G G +P+ +TL  +L+  +
Sbjct: 365 QAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVAS 424

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-RDVYSYT 395
           ++  L  GK +H    K+       + NAL+ MYAK G I  A   F  ++C RD  S+T
Sbjct: 425 SLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWT 484

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI+ LA HG A +AL++F  M   G+ PD +T+VGV SAC+HAGLV +G ++F  M  V
Sbjct: 485 SMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDV 544

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
             + P   HY CMVDLFGRAGL++EA + I+ MP+ PD   WG+LL AC++H  ++L ++
Sbjct: 545 DKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKV 604

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             E L+  EPE  GAY  + N+YS+  +W+EA K+RK MK+ +VKK  G S +EV  + +
Sbjct: 605 AAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVH 664

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F   D +HP+  EIY  + +I  + K  GY+
Sbjct: 665 VFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYV 696



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 139/508 (27%), Positives = 211/508 (41%), Gaps = 132/508 (25%)

Query: 125 KACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-------- 176
           K+  +S      Q VH   +K+ L+ +VY+ N LM +Y+  G      KLF         
Sbjct: 22  KSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAF 81

Query: 177 ---------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
                                F Q PQ  RD VSWTT+I  Y  +    +AI    DM +
Sbjct: 82  SWNTVLSAYSKRGDMDSTCEFFDQLPQ--RDSVSWTTMIVGYKNIGQYHKAIRVMGDMVK 139

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             + P    L  VL++ +    +  G K+H +I      L  +V + N+L++MY KCG+ 
Sbjct: 140 EGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVK--LGLRGNVSVSNSLLNMYAKCGDP 197

Query: 276 PSARKVFDEMPVKNV-------------------------------VSWNSMIAGLTHRG 304
             A+ VFD M V+++                               V+WNSMI+G   RG
Sbjct: 198 MMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRG 257

Query: 305 QFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
               ALDIF +M +   L PD FTL  VL++CAN+  L +GK +H+++     +  G + 
Sbjct: 258 YDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVL 317

Query: 364 NALVDMYAKCGRID---------------------------------QAFGVFRSMKCRD 390
           NAL+ MY++CG ++                                 QA  +F S+K RD
Sbjct: 318 NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRD 377

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HA 439
           V ++TAMIVG   HG   +A+++F  M   G  P+  T   +LS  S           H 
Sbjct: 378 VVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHG 437

Query: 440 GLVEEG-----------------CKHFLDMSRVYNL---QPQTEHYGCMVDLFGRAGLIR 479
             V+ G                   +    SR ++L   +  T  +  M+    + G   
Sbjct: 438 SAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE 497

Query: 480 EALDLIKSM---PLVPDAFVWGALLGAC 504
           EAL+L ++M    L PD   +  +  AC
Sbjct: 498 EALELFETMLMEGLRPDHITYVGVFSAC 525



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 60  LYDKIISLSRGNEIENL--SLQNPQVYLYN-FIIQCLSNANPLEAIALYREMLIKGLLPN 116
           L D  I L   N+ +N+  SL++  V  +   I+    + +  EAI L+R M+  G  PN
Sbjct: 353 LLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPN 412

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
           +YTL  +L       SL  G+Q+H  ++K+  + +V V N L+ +YA  G I +  + F 
Sbjct: 413 SYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFD 472

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
                + +RD VSWT++I A  +  +  EA+  F  M    LRPD +  V V SAC+  G
Sbjct: 473 L---IRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAG 529

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNS 295
            ++ G +    + D    + P +  +  ++D++ + G +  A++  ++MP++ +VV+W S
Sbjct: 530 LVNQGRQYFDMMKDVD-KIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGS 588

Query: 296 MIAG 299
           +++ 
Sbjct: 589 LLSA 592


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 174/440 (39%), Positives = 262/440 (59%), Gaps = 6/440 (1%)

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           + +V K+F        ++DLVSW T+I    +     E +    +M  ANL+PD   L  
Sbjct: 250 VDSVRKIFEM----MPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSS 305

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL   ++  D+S G +IH         L  +V++ ++LIDMY KC  +  + +VF  +  
Sbjct: 306 VLPLIAENVDISKGKEIHGCSIRQ--GLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTE 363

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           ++ +SWNS+IAG    G F E L  FR+M    +KP  ++   ++ +CA++  L LGK +
Sbjct: 364 RDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQL 423

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H Y+ +N  + + FI ++LVDMYAKCG I  A  +F  M+ RD+ S+TAMI+G A+HG A
Sbjct: 424 HGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHA 483

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
             A+++F +M   GIEP+ V F+ VL+ACSHAGLV+E  K+F  M+  + + P  EHY  
Sbjct: 484 LDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAA 543

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           + DL GRAG + EA D I  MP+ P   VW  LL AC++H  V++AE V   ++  +P+ 
Sbjct: 544 VSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKN 603

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
            GAYIL+ NIYS+  RWKEA K R  ++   ++KTP CS +EV  + Y F  GD+SHP  
Sbjct: 604 TGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCY 663

Query: 588 LEIYKLLDEIMHQSKNHGYI 607
            +I + ++ +M   +  GY+
Sbjct: 664 EKIREAMEVLMELMEKEGYV 683



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 159/287 (55%), Gaps = 17/287 (5%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E + + REM    L P+++TL  VL    ++  +  G+++H  S++  L + VYV ++L+
Sbjct: 283 ETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLI 342

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA C  +   +++F        +RD +SW ++I   V+     E +  F  M  A ++
Sbjct: 343 DMYAKCTRVVDSYRVFTL----LTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIK 398

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P       ++ AC+ L  L LG ++H YIT N F+   ++FI ++L+DMY KCGNI +AR
Sbjct: 399 PKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD--ENIFIASSLVDMYAKCGNIRTAR 456

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++FD M ++++VSW +MI G    G   +A+++F +M+  G++P+    + VL +C++ G
Sbjct: 457 QIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAG 516

Query: 340 WLELGKWVHTYLDKNHINTDGFIG------NALVDMYAKCGRIDQAF 380
            ++   W +     N +  D  I        A+ D+  + GR+++A+
Sbjct: 517 LVDEA-WKYF----NSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAY 558



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 217/486 (44%), Gaps = 34/486 (6%)

Query: 33  SSKSVGQLKQFHAFIIK----TGSPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           S KS  Q +Q HA ++K    +         +Y  I  L     + N +L  P    +  
Sbjct: 20  SIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFN-TLHFPPALAWKS 78

Query: 89  IIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           +I+C  S+  P +++  +  ML  GL P+    P VLKAC     L +G+ +H Y ++  
Sbjct: 79  VIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVG 138

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFH-----FRQHPQAQRDLVSWTTLIQAYVKMDY 202
           L  ++Y  N LM +Y+    +K   +          +  +  R + + + L+    +   
Sbjct: 139 LDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGRKVS 198

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             EA    +D+   +   +  +L I     S+  ++     + + I D   ++S D    
Sbjct: 199 DIEAF--NYDVSCRSREFEAQVLEIDYKPRSEYREME-ACNLGQQIKDISHSMSVD---- 251

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
                         S RK+F+ MP K++VSWN++IAG    G + E L + R M G  LK
Sbjct: 252 --------------SVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLK 297

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD FTL  VL   A    +  GK +H    +  ++ + ++ ++L+DMYAKC R+  ++ V
Sbjct: 298 PDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRV 357

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F  +  RD  S+ ++I G   +G   + L  F +M    I+P   +F  ++ AC+H   +
Sbjct: 358 FTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTL 417

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
             G +    ++R             +VD++ + G IR A  +   M L  D   W A++ 
Sbjct: 418 HLGKQLHGYITR-NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRL-RDMVSWTAMIM 475

Query: 503 ACKIHA 508
            C +H 
Sbjct: 476 GCALHG 481



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 132/291 (45%), Gaps = 12/291 (4%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K   +     +  L  +   +   + I  C+ N    E +  +R+ML+  + P +Y+
Sbjct: 344 MYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYS 403

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
              ++ AC    +L +G+Q+H Y  +     N+++ ++L+ +YA CG I+   ++F   +
Sbjct: 404 FSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMR 463

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
                RD+VSWT +I       +  +AI  F  M    + P+ +  + VL+ACS  G + 
Sbjct: 464 ----LRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVD 519

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS-WNSMIA 298
              K    +T + F ++P V  + A+ D+  + G +  A      MP+    S W ++++
Sbjct: 520 EAWKYFNSMTLD-FGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLS 578

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDD---FTLVCVLNSCANIGWLELGKW 346
                     A  +  R+  L + P +   + L+  + S A   W E  KW
Sbjct: 579 ACRVHKNVDMAEKVANRI--LEVDPKNTGAYILLANIYSAAR-RWKEAAKW 626



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 173/407 (42%), Gaps = 47/407 (11%)

Query: 107 EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
           E L+  LL N    P  +K+  +SQ+    QQ+HA  +K    S   +   L  +Y+   
Sbjct: 8   EALVNSLLRN----PLSIKS--RSQA----QQLHAQVLKFQASSLCNLSLLLS-IYSHIN 56

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
           L+    +LF+    P A    ++W ++I+ Y     P +++ SF  M  + L PD  +  
Sbjct: 57  LLHDSLRLFNTLHFPPA----LAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFP 112

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP-------SAR 279
            VL AC+ L DL+LG  +H YI      L  D++  NAL++MY K   +         A 
Sbjct: 113 SVLKACAMLMDLNLGESLHGYII--RVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGAS 170

Query: 280 KVFDEMPVKN-VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           +V DEM  +   V   S++ G     Q ++  DI      +  +  +F         A +
Sbjct: 171 QVLDEMTERTRSVRTASVLVG----NQGRKVSDIEAFNYDVSCRSREFE--------AQV 218

Query: 339 GWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
             LE+  K    Y +    N    +G  + D+ +    +D    +F  M  +D+ S+  +
Sbjct: 219 --LEIDYKPRSEYREMEACN----LGQQIKDI-SHSMSVDSVRKIFEMMPEKDLVSWNTI 271

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I G A +G   + L +  EM    ++PD  T   VL   +    + +G K     S    
Sbjct: 272 IAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKG-KEIHGCSIRQG 330

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           L  +      ++D++ +   + ++  +  ++    D   W +++  C
Sbjct: 331 LDAEVYVASSLIDMYAKCTRVVDSYRVF-TLLTERDGISWNSIIAGC 376


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 187/541 (34%), Positives = 304/541 (56%), Gaps = 16/541 (2%)

Query: 74  ENLSLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQS 132
           EN       V+ +N II   ++N  P E    Y++M  +G++P+ +T P  +KAC     
Sbjct: 95  ENDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLE 154

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           ++   ++H    K  L  +V++ + L+  Y   GL++  H    F + P   RD+V W  
Sbjct: 155 IK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLME--HAQVAFEELPI--RDVVLWNA 207

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           ++  Y ++      + +F  M   ++ P    +   LS  + +GDL+ G  IH +     
Sbjct: 208 MVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMG 267

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           ++    V + N+LIDMY KC  I  A ++F+ M  K++ SWNS+++     G     L +
Sbjct: 268 YD--SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRL 325

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG------FIGNAL 366
             RM G G++PD  T+  VL +C+++  L  G+ +H Y+  + +  DG       + NA+
Sbjct: 326 LDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAV 385

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           +DMYAKCG +  A  VF  M  +DV S+  MI+G  +HG   +AL++FS M +V ++PDE
Sbjct: 386 IDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDE 445

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           VTFVGVLSACSHAG V +G    + M   Y++ P  EHY C++D+ GRAG + EA +L  
Sbjct: 446 VTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELAL 505

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546
           +MP+  +  VW ALL AC++H    LAE+  + +   EPE  G+Y+LM+N+Y +  R++E
Sbjct: 506 TMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEE 565

Query: 547 ALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            L++R  M+++ V+KTPGCS +E+    + F   D++HP+   IY  L+ +  +   HGY
Sbjct: 566 VLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAXSIYAGLNSLTARLXEHGY 625

Query: 607 I 607
           +
Sbjct: 626 V 626


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 179/508 (35%), Positives = 302/508 (59%), Gaps = 6/508 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E++ L+ +M  +G++P+   +  V+ AC +  ++   + +  Y  +     +V +   ++
Sbjct: 114 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMI 173

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG +++  ++F   +    +++++SW+ +I AY       +A+  F  M  + + 
Sbjct: 174 DMYAKCGCVESAREIFDRME----EKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGML 229

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + L  +L ACS L +L +G  IH  +    F L  D F+  AL+DMY KC  I  AR
Sbjct: 230 PDKITLASLLYACSDLKNLQMGRLIHHIVY--KFGLDLDHFVCAALVDMYGKCREIEDAR 287

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +FD+MP +++V+W  MI G    G   E+L +F +M+  G+ PD   +V V+ +CA +G
Sbjct: 288 FLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLG 347

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            +   + +  Y+ +     D  +G A++DM+AKCG ++ A  +F  M+ ++V S++AMI 
Sbjct: 348 AMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIA 407

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
               HG+  KALD+F  M + GI P+++T V +L ACSHAGLVEEG + F  M   Y+++
Sbjct: 408 AYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVR 467

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
              +HY C+VDL GRAG + EAL LI+SM +  D  +WGA LGAC+ H  V LAE    +
Sbjct: 468 ADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATS 527

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L+  +P+  G YIL++NIY++  RW++  K R  M +R++KK PG + +EV  + ++F  
Sbjct: 528 LLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSV 587

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GD +HP++ EIY++L  + ++ +  GY+
Sbjct: 588 GDTTHPRSKEIYEMLKSLGNKLELVGYV 615



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 138/411 (33%), Positives = 225/411 (54%), Gaps = 8/411 (1%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           +     +RE++  G  P+ YTLP+V++AC   ++L++G+ +H    K  L  + +V   L
Sbjct: 12  INCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAAL 71

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y  C  I+    LF   Q    +RDLV+WT +I  Y +     E+++ F  M +  +
Sbjct: 72  VDMYVKCREIEDARFLFDKMQ----ERDLVTWTVMIGGYAECGKANESLVLFEKMREEGV 127

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            PD + +V V+ AC+KLG +     I  YI    F L  DV +  A+IDMY KCG + SA
Sbjct: 128 VPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQL--DVILGTAMIDMYAKCGCVESA 185

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           R++FD M  KNV+SW++MIA   + GQ ++ALD+FR M   G+ PD  TL  +L +C+++
Sbjct: 186 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDL 245

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             L++G+ +H  + K  ++ D F+  ALVDMY KC  I+ A  +F  M  RD+ ++T MI
Sbjct: 246 KNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMI 305

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G A  G A ++L +F +M + G+ PD+V  V V+ AC+  G + +  +   D  +    
Sbjct: 306 GGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA-RTIDDYIQRKKF 364

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           Q        M+D+  + G +  A ++   M    +   W A++ A   H +
Sbjct: 365 QLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ 414



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 138/298 (46%), Gaps = 34/298 (11%)

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           M+ G    G +      FR +   G +PD++TL  V+ +C ++  L++G+ +H  + K  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           ++ D F+  ALVDMY KC  I+ A  +F  M+ RD+ ++T MI G A  GKA ++L +F 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEG----------------------------CK 447
           +M + G+ PD+V  V V+ AC+  G + +                             C 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 448 HFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLG 502
                  +++   +     +  M+  +G  G  R+ALDL + M    ++PD     +LL 
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDG-AYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           AC     +++  ++   + +F  + D      + ++Y      ++A  L  KM ER +
Sbjct: 241 ACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDL 298


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 193/546 (35%), Positives = 304/546 (55%), Gaps = 17/546 (3%)

Query: 67  LSRGNEIENL--SLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLL-PNTYTLPYV 123
           LSRG++   +  ++ +P   L+N ++  L  +  LEA   +  M+  G + P++ TL   
Sbjct: 162 LSRGDDARKVFDTVPSPDTILWNTLLAGLPGSEALEA---FVRMVDAGRVRPDSTTLASS 218

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           L+A  ++  + +G+ VH Y +K  L  + +V   LM LY+ CG + +   LF    +P  
Sbjct: 219 LRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNP-- 276

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
             DLV++  LI  Y        ++  F ++  +  RP+   LV V+   S  G   L   
Sbjct: 277 --DLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARC 334

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303
           +H ++      L  D  +  AL  +Y +  ++ SAR +FD M  K + SWN+MI+G    
Sbjct: 335 LHAFVVKA--RLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQN 392

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
           G  + A+ +F+ MQ L ++P+  T+   L++CA++G L LGKWVH  + K  +  + ++ 
Sbjct: 393 GLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVM 452

Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423
            AL+DMYAKCG I +A  +F  M  ++V S+ AMI G  +HG+  +AL ++ +M    I 
Sbjct: 453 TALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARIL 512

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           P   TF+ V+ ACSH GLV+EG K F  M+  Y + P  EH  CMVDL GRAG + EAL+
Sbjct: 513 PTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALE 572

Query: 484 LIKSMP---LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540
           LI   P   + P   VWGALLGAC +H   +LA++  + L   + E  G Y+L++N+Y+S
Sbjct: 573 LISEFPQSAIGPG--VWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTS 630

Query: 541 KNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
           K  + EA  +R++ K RK+ KTPGC+L+E+    + F  GD  HP++  IY  L+ +  +
Sbjct: 631 KKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAK 690

Query: 601 SKNHGY 606
               GY
Sbjct: 691 MIEAGY 696



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 164/384 (42%), Gaps = 72/384 (18%)

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
           + D F+ +AL  +Y K      ARKVFD +P  + + WN+++AGL       EAL+ F R
Sbjct: 146 AADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPG----SEALEAFVR 201

Query: 316 MQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           M   G ++PD  TL   L + A    + +G+ VH Y  K  +     +   L+ +Y+KCG
Sbjct: 202 MVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCG 261

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV-- 432
            +D A  +F  M   D+ +Y A+I G +++G    ++++F E++  G  P+  T V V  
Sbjct: 262 DMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIP 321

Query: 433 ---------LSACSHAGLVEEG---------------CKHFLDMSRVYN-----LQPQTE 463
                    L+ C HA +V+                 C+   DM    +     L+   E
Sbjct: 322 VYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCR-LNDMESARSIFDAMLEKTME 380

Query: 464 HYGCMVDLFGRAGLIREAL---DLIKSMPLVPDAFVWGALLGACK----------IH--- 507
            +  M+  + + GL   A+    L++ + + P+     + L AC           +H   
Sbjct: 381 SWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRII 440

Query: 508 --AKVELAEIVMENLV-----------------RFEPEGDGAYILMTNIYSSKNRWKEAL 548
              K+EL   VM  L+                 R + +   ++  M + Y    +  EAL
Sbjct: 441 SKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEAL 500

Query: 549 KLRKKMKERKVKKTPGCSLVEVYG 572
           KL K M + ++  T    L  +Y 
Sbjct: 501 KLYKDMLDARILPTSSTFLSVIYA 524


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 213/620 (34%), Positives = 324/620 (52%), Gaps = 59/620 (9%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEI-ENLSLQNPQVYLYNF 88
           KS+ Q KQ H  II  G  QH   +      Y     L+  + I EN ++ +P    +N 
Sbjct: 107 KSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHP--LPWNL 164

Query: 89  IIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           +I   + N    EA++ Y++M  KG+ P+ +T P VLKAC +   +  G+++HA    + 
Sbjct: 165 LISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASC 224

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
           L  N++V N+L+ +YA  G +     LF        +RD VSW T+I  Y       EA 
Sbjct: 225 LGWNLFVHNSLVSMYAKTGELSTARCLFE----NMLERDDVSWNTMISGYASKGMWKEAF 280

Query: 208 LSFFDM------------------------------CQANLRP-----DGMILVIVLSAC 232
             F  M                                +++R      D +  +I L AC
Sbjct: 281 ELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGAC 340

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           S +G + LG +IH     + ++   +V   NALI MY +C  +  A  +F     KN+++
Sbjct: 341 SHIGAIKLGREIHGSAIRSFYDGVDNV--KNALITMYSRCKYLRHAYNLFQSTRTKNIIT 398

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WNSM++G TH  + +EA  +FR M   G++P+  T+  +L  CA +  L+ GK  H Y+ 
Sbjct: 399 WNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYI- 457

Query: 353 KNHINTDGF-----IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
              +   GF     + N+LVDMYA+ G++ +A  +F S+  RD  +YT++I G  I G+ 
Sbjct: 458 ---LRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEG 514

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            +AL +F EM +  I+PD VT V VLSACSH+GLV EG K F  M   Y + P+ EH+ C
Sbjct: 515 REALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFAC 574

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           MVDLFGRAGL+ +A ++I  MP  P + +W  LLGAC+IH   E+ E   E L+   PE 
Sbjct: 575 MVDLFGRAGLLHKAKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPEN 634

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
            G Y+L+ N+Y++   W +  K+R  M++  V+K PGC+ V+V   F+ F   D S P  
Sbjct: 635 SGYYVLIANMYAAAGCWSKLAKVRTYMRDLGVRKAPGCAWVDVGSGFFPFLVDDTSKPHV 694

Query: 588 LEIYKLLDEIMHQSKNHGYI 607
            ++Y LL+ +    K+  Y+
Sbjct: 695 NKLYPLLEGLTELMKDAEYV 714



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 3/225 (1%)

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           L  LS G ++H  I    F   P   I   L+  Y     +  A  + +   + + + WN
Sbjct: 106 LKSLSQGKQLHTLIISLGFEQHP--IIVPKLVTFYTNFDLLADAHTITENSNILHPLPWN 163

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
            +I+     G   EAL  +++M   G++PD FT   VL +C     +  GK +H  ++ +
Sbjct: 164 LLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINAS 223

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            +  + F+ N+LV MYAK G +  A  +F +M  RD  S+  MI G A  G   +A ++F
Sbjct: 224 CLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELF 283

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
            +M   GIE + +T+  +   C  +G  EE  +  L   R Y + 
Sbjct: 284 GKMRVEGIELNIITWNTIAGGCVQSGNFEEALE-LLSHMRSYGID 327


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 220/661 (33%), Positives = 336/661 (50%), Gaps = 76/661 (11%)

Query: 11  SRYNDINTFQQLSLL-------------HQSPRLESS----KSVGQLKQFHAFIIKTGSP 53
           SR N ++ F+ +SL+             H    L SS    KS+ + +Q H  II  G  
Sbjct: 73  SRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFE 132

Query: 54  QHQTQILYDKIISLSRGNEI--------ENLSLQNPQVYLYNFIIQC-LSNANPLEAIAL 104
           QH   IL  K+++      +        EN ++ +P  + +N +I   + N    +A++ 
Sbjct: 133 QHP--ILVPKLVTFYSAFNLLVDAHVITENSNILHP--FPWNLLISSYVRNGFCQKALSA 188

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           Y++M+ KG+ P+ +T P VLKAC +   L  G++VH     + +  ++ V N L+ +Y  
Sbjct: 189 YKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGK 248

Query: 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM----------- 213
           CG +     LF        +RD VSW ++I  Y  M    EA   F  M           
Sbjct: 249 CGKVGIARDLFD----KIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIII 304

Query: 214 --------------------------CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
                                     C ++L  D + L+I L ACS +GD  LG +IH +
Sbjct: 305 WNTIAGGYLRTGNYKGALELLSQMRKCGSHL--DSVALIIGLGACSHIGDAKLGKEIHSF 362

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
              + F     V   NALI MY +C ++  A  +F  M  K++++WNS+I+G  H  + +
Sbjct: 363 AIRSCFGEVDTV--KNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSE 420

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI-GNAL 366
           EA  + R M   G++P+  T+  VL  CA +  L+ GK  H Y+ +     D  +  NAL
Sbjct: 421 EASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNAL 480

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           VDMYA+ G++ +A  VF  +  RD  +YT+MI G  + G+   AL +F EM+   I+PD 
Sbjct: 481 VDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDH 540

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           +T + VLSACSH+GLV +G   F  M  +Y L P  EH+ CM DLFGRAGL+ +A ++I+
Sbjct: 541 ITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIR 600

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546
           +MP  P   +W  L+GAC+IH   E+ E   E L+  +PE  G Y+L+ N+Y++   W +
Sbjct: 601 NMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNK 660

Query: 547 ALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             K+R  M++  V+K PGC+ V+V   F  F   D S+    EIY LL+ +    K  GY
Sbjct: 661 LAKVRIFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVMKEAGY 720

Query: 607 I 607
           I
Sbjct: 721 I 721


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 192/583 (32%), Positives = 324/583 (55%), Gaps = 57/583 (9%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQ---TQILYDKIISLSRGNEIEN---LSLQNPQVYLYNF 88
           K++  L Q H F IK+G         +++    IS+S          L    P  +++N 
Sbjct: 183 KNLRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNT 242

Query: 89  IIQCLSNAN-PLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           +++  S ++ P  ++A++ EM+ KG + P++++  +V+KA    +SLR G Q+H  ++K 
Sbjct: 243 LVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKH 302

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            L S+++V  TL+ +Y  CG +    K+F     P    +LV+W                
Sbjct: 303 GLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQP----NLVAWNA-------------- 344

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI-HRYITDNHFNLSPDVFIHNAL 265
                                V++AC +  D+S   +I  + +  NH +        N +
Sbjct: 345 ---------------------VVTACFRGNDVSGAREIFDKMLVRNHTSW-------NVM 376

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           +  Y+K G +  A+++F EMP ++ VSW++MI G +H G F E+   FR +    ++P++
Sbjct: 377 LAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNE 436

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
            +L  VL++C+  G  E GK +H +++K+  +    + NAL+DMY++CG +  A  VF  
Sbjct: 437 VSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEG 496

Query: 386 MK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
           M+  R + S+T+MI GLA+HG   +A+ IF+EM++ G+ PDE++F+ +L ACSHAGL++E
Sbjct: 497 MQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKE 556

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G  +F  M RVY+++P  EHYGCMVDL+GR+G +++A   I  MP+ P A VW  LLGAC
Sbjct: 557 GEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGAC 616

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
             H  +ELAE V + L   +P   G  +L++N+Y++  +WK+   +RK M  +++KK   
Sbjct: 617 SSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITA 676

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH-GY 606
            SLVEV    Y+F   +K     +E ++ L EI+ + ++  GY
Sbjct: 677 WSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGY 719


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 190/473 (40%), Positives = 277/473 (58%), Gaps = 8/473 (1%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRL-YAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           QQ+HA  + T L     +   L+   YA    I    +LF     P    D   + +LI 
Sbjct: 36  QQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKP----DTFLFHSLIT 91

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
              K  +P E++L +  M  AN+         V+ + + L   S+G  IH ++    + L
Sbjct: 92  LTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGL 151

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             D ++  AL+  Y K G++  ARKVFD+MP K VV+WNSMI+G    G  KEA+++F  
Sbjct: 152 --DAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFL 209

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           MQ LG+KPD  T V +L++CA +G + LG WVH Y+ +N  + +  +G AL++MY++CG 
Sbjct: 210 MQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGN 269

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           + +A  VF SM+ +++ ++TAMI G  +HG   +A+++F+EMS  G  P+ VTFV VLSA
Sbjct: 270 VSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSA 329

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK-SMPLVPDA 494
           C+HAGLV+EG + F  M + Y L P  EH  CMVD+ GRAG + EA   IK + P  P  
Sbjct: 330 CAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAP 389

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            VW A+LGACK+H   +L   V E+L+  EPE  G Y++++NIY+   R     K+R  M
Sbjct: 390 AVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIM 449

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              ++KK  G S ++V  + Y F  GDKSHPKT +IY  LDE+M + +  GYI
Sbjct: 450 IRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYI 502



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 216/420 (51%), Gaps = 39/420 (9%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIE-------N 75
           S++   PRL+       L+Q HA II TG    +T+ L  K++S +              
Sbjct: 24  SIILAGPRLKP------LQQIHARIIITG--LGRTRSLITKLLSFAYAAASPISYTRRLF 75

Query: 76  LSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
            S+  P  +L++ +I   S  + P E++  YR ML+  +  + YT   V+K+     +  
Sbjct: 76  FSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFS 135

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
           +G+ +H +        + YV   L+  YA  G +    K+F        ++ +V+W ++I
Sbjct: 136 IGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVF----DKMPEKTVVAWNSMI 191

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
             Y +  +  EA+  FF M    ++PD    V +LSAC+++G + LG  +H YI  N F+
Sbjct: 192 SGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFD 251

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           L  +V +  AL++MY +CGN+  AR+VFD M  KN+V+W +MI+G    G   +A+++F 
Sbjct: 252 L--NVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFN 309

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA-----LVDM 369
            M   G +P++ T V VL++CA+ G ++ G+ + T + + +    G + +      +VDM
Sbjct: 310 EMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEY----GLVPSVEHQVCMVDM 365

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYS--YTAMIVGLAIHGKAWKALDIFSEMSQ--VGIEPD 425
             + G +++A+   ++   ++     +TAM+    +H    K  D+  E+++  + IEP+
Sbjct: 366 LGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMH----KNFDLGVEVAEHLLSIEPE 421



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 106/228 (46%), Gaps = 9/228 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+  M   G+ P++ T   +L AC Q  ++ +G  VH Y  +     NV +   LM
Sbjct: 202 EAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALM 261

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ CG +    ++F   +    ++++V+WT +I  Y    + ++AI  F +M     R
Sbjct: 262 NMYSRCGNVSKAREVFDSME----EKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPR 317

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  V VLSAC+  G +  G +I   +    + L P V     ++DM  + G++  A 
Sbjct: 318 PNNVTFVAVLSACAHAGLVDEGRQIFTTM-KQEYGLVPSVEHQVCMVDMLGRAGHLNEAY 376

Query: 280 KVFDEMPVKNVVS--WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           +       K      W +M+        F   +++   +  L ++P++
Sbjct: 377 QFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHL--LSIEPEN 422


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 200/550 (36%), Positives = 318/550 (57%), Gaps = 19/550 (3%)

Query: 41  KQFHAFIIKTGSPQHQTQ-----ILYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLS 94
           +Q H +++KTG     T       +Y K   +     + + +S +N     +N II  L+
Sbjct: 129 RQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNG--VSWNAIITSLA 186

Query: 95  N-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
                 +A+ ++R M+  G+ PN+ T   +L    + +    G+++H +S++  L S+++
Sbjct: 187 YLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIF 246

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V N L+ +YA  G       +F+       ++++VSW  ++  + +      A+     M
Sbjct: 247 VANALIDMYAKSGRSLQASNVFN----QIGEKNIVSWNAMVANFAQNRLELAAVDLVRQM 302

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKC 272
                 P+ +    VL AC+++G L  G +IH R I       S D+F+ NAL DMY KC
Sbjct: 303 QADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGS---SVDLFVSNALTDMYAKC 359

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G +  AR+VF ++ +++ VS+N +I G +      E+L +F  M   G+K D  + + V+
Sbjct: 360 GCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVI 418

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           ++CAN+  L+ GK VH    + H++T  FI NAL+D Y KCGRID A  VFR +  RD  
Sbjct: 419 SACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTA 478

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+ +MI+G  + G+   A+++F  M + G+E D V+++ VLSACSH GLVEEG K+F  M
Sbjct: 479 SWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHM 538

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
            +V N++P   HY CMVDL GRAGLI EA+ LI+S+P+ PDA VWGALLGAC+IH  +EL
Sbjct: 539 -QVQNIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIEL 597

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           A    E+L + +P+  G Y +++N+Y+   +W EA ++RK MK R  KK PGCS V++  
Sbjct: 598 AHWAAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDN 657

Query: 573 EFYEFRKGDK 582
           + + F  G++
Sbjct: 658 QVHAFVAGER 667



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 188/335 (56%), Gaps = 7/335 (2%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           G+  + +T P+VLKAC  S S++ G+++H    K    S+V+V NTL+  Y  CG +K V
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLS 230
            ++F        +RD+VSW ++I  +    +  EAI  F +M  ++  RP+ + +V VL 
Sbjct: 62  KRVF----DEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLP 117

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
            C+ L D   G +IH Y+      L   V + NAL+D+Y KCG +  +R+VFDE+  +N 
Sbjct: 118 VCAGLEDGVTGRQIHCYVVKT--GLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNG 175

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           VSWN++I  L +  + ++AL++FR M   G+KP+  T   +L     +   + GK +H +
Sbjct: 176 VSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGF 235

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
             +  + +D F+ NAL+DMYAK GR  QA  VF  +  +++ S+ AM+   A +     A
Sbjct: 236 SLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAA 295

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
           +D+  +M   G  P+ VTF  VL AC+  G +  G
Sbjct: 296 VDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPG 330



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 141/465 (30%), Positives = 236/465 (50%), Gaps = 11/465 (2%)

Query: 100 EAIALYREM-LIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           EAI L+ EM L  G  PN  ++  VL  C   +    G+Q+H Y +KT L S V V N L
Sbjct: 91  EAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNAL 150

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y  CG +K   ++F       ++R+ VSW  +I +   ++   +A+  F  M    +
Sbjct: 151 VDVYGKCGYVKDSRRVF----DEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGV 206

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           +P+ +    +L    +L     G +IH +     F L  D+F+ NALIDMY K G    A
Sbjct: 207 KPNSVTFSSMLPVLVELKLFDFGKEIHGFSL--RFGLESDIFVANALIDMYAKSGRSLQA 264

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
             VF+++  KN+VSWN+M+A          A+D+ R+MQ  G  P+  T   VL +CA I
Sbjct: 265 SNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARI 324

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G+L  GK +H    +   + D F+ NAL DMYAKCG ++ A  VF+ +  RD  SY  +I
Sbjct: 325 GFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFK-ISLRDEVSYNILI 383

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
           +G +      ++L +F EM   G++ D V+++GV+SAC++   +++G K    ++   +L
Sbjct: 384 IGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQG-KEVHGLAVRKHL 442

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
                    ++D + + G I  A  + + +P   D   W +++    +  ++ +A  + E
Sbjct: 443 HTHLFIANALLDFYIKCGRIDLAGKVFRQIP-SRDTASWNSMILGYGMLGELTIAINLFE 501

Query: 519 NLVRFEPEGDG-AYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
            +     E D  +YI + +  S     +E  K  + M+ + +K T
Sbjct: 502 AMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPT 546



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 159/313 (50%), Gaps = 10/313 (3%)

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           +R D      VL AC+    +  G +IH  +    F+   DVF+ N L+  Y  CG +  
Sbjct: 3   VRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFD--SDVFVGNTLLLFYGNCGGLKD 60

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GLGLKPDDFTLVCVLNSCA 336
            ++VFDEM  ++VVSWNS+I   +  G + EA+ +F  M    G +P+  ++V VL  CA
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA 120

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            +     G+ +H Y+ K  +++   +GNALVD+Y KCG +  +  VF  +  R+  S+ A
Sbjct: 121 GLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNA 180

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I  LA   +   AL++F  M   G++P+ VTF  +L       L + G K     S  +
Sbjct: 181 IITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFG-KEIHGFSLRF 239

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            L+        ++D++ ++G   +A ++   +    +   W A++ A     ++ELA + 
Sbjct: 240 GLESDIFVANALIDMYAKSGRSLQASNVFNQIG-EKNIVSWNAMV-ANFAQNRLELAAV- 296

Query: 517 MENLVRFEPEGDG 529
             +LVR + + DG
Sbjct: 297 --DLVR-QMQADG 306



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 6/166 (3%)

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
           +G++ DD T   VL +CA+   ++ G+ +H  + K   ++D F+GN L+  Y  CG +  
Sbjct: 1   MGVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKD 60

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS-QVGIEPDEVTFVGVLSACS 437
              VF  M  RDV S+ ++I   ++HG   +A+ +F EM+ + G  P+ V+ V VL  C 
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVC- 119

Query: 438 HAGLVEEGCKHFLDMSRVY--NLQPQTEHYGCMVDLFGRAGLIREA 481
            AGL E+G         V    L  Q      +VD++G+ G ++++
Sbjct: 120 -AGL-EDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDS 163


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 202/580 (34%), Positives = 318/580 (54%), Gaps = 16/580 (2%)

Query: 37  VGQLKQFHAFIIK--TGSP---QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQ 91
           +G  +Q HA  IK  +GS    Q+    +Y K  S+  G  +    +++  +  +  II 
Sbjct: 164 LGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFE-RIRDKDLISWGSIIA 222

Query: 92  CLSN-ANPLEAIALYREMLIKGLL-PNTYTLPYVLKACWQS-QSLRVGQQVHAYSMKTAL 148
            L+     ++A+ ++REM+ +G+  PN +    V +AC     SL  G+Q+H  S+K  L
Sbjct: 223 GLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQL 282

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             N Y   +L  +YA C  + +  K+F+  + P    DLVSW +LI A+      +EA++
Sbjct: 283 DRNSYAGCSLSDMYARCNELDSARKVFYRIESP----DLVSWNSLINAFSAKGLLSEAMV 338

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F +M  + LRPDG+ ++ +L AC     L  G  IH Y+      L  DV + N+L+ M
Sbjct: 339 LFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVK--LGLGGDVIVSNSLLSM 396

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y +C +  SA  VF E   ++VV+WNS++         ++   +F  +       D  +L
Sbjct: 397 YARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISL 456

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             VL++ A +G+ E+ K VH Y  K  +  D  + N L+D YAKCG +D A  +F  M  
Sbjct: 457 NNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGT 516

Query: 389 -RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            RDV+S++++IVG A  G A +ALD+F+ M  +G++P+ VTFVGVL+ACS  GLV+EGC 
Sbjct: 517 GRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACSRVGLVDEGCY 576

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           ++  M   Y + P  EH  C++DL  RAG + EA   +  MP  PD  +W  LL A + H
Sbjct: 577 YYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQMPFEPDIIMWKTLLAASRTH 636

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
             V++ +   E ++  +P    AY+L+ NIY+S   W E  +L+K M+   V+K+PG S 
Sbjct: 637 NDVDMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDMRSSGVQKSPGKSW 696

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +++ GE   F   D+SHP++ EIY +L+ I  +    GYI
Sbjct: 697 IKLKGELKVFIVEDRSHPESDEIYTMLEVIGLEMVKAGYI 736



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 193/409 (47%), Gaps = 9/409 (2%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N+   +A+ L+  ML  G +P+ + L   + AC +   L +G+QVHA ++K    S++ V
Sbjct: 126 NSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIV 185

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ +Y+  G +     LF   +     +DL+SW ++I    +     +A+  F +M 
Sbjct: 186 QNALVTMYSKSGSVGDGFALFERIR----DKDLISWGSIIAGLAQQGREMDALQIFREMI 241

Query: 215 QANL-RPDGMILVIVLSACS-KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
              +  P+      V  ACS  +  L  G +IH       + L  + +   +L DMY +C
Sbjct: 242 AEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHG--VSVKYQLDRNSYAGCSLSDMYARC 299

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
             + SARKVF  +   ++VSWNS+I   + +G   EA+ +F  M+  GL+PD  T++ +L
Sbjct: 300 NELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALL 359

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +C     L  G+ +H+YL K  +  D  + N+L+ MYA+C     A  VF     RDV 
Sbjct: 360 CACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVV 419

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           ++ +++     H        +FS + +     D ++   VLSA +  G  E   K     
Sbjct: 420 TWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELGYFEM-VKQVHAY 478

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           +    L         ++D + + G + +A  L + M    D F W +L+
Sbjct: 479 AFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLI 527



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 203/422 (48%), Gaps = 17/422 (4%)

Query: 127 CWQSQSLRVGQQVHAYSMKTA-----LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           C + +SL  G+ VH + + ++     L  N  + N L+ +Y  CG   +   +F      
Sbjct: 52  CSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDSARVVFD----G 107

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
              R+ VSW  +I A+ +     +A+  F  M ++   PD   L   + ACS+LGDL LG
Sbjct: 108 MLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLG 167

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            ++H       +    D+ + NAL+ MY K G++     +F+ +  K+++SW S+IAGL 
Sbjct: 168 RQVHAQAI--KWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLA 225

Query: 302 HRGQFKEALDIFRRMQGLGL-KPDDFTLVCVLNSCA-NIGWLELGKWVHTYLDKNHINTD 359
            +G+  +AL IFR M   G+  P++F    V  +C+  +  LE G+ +H    K  ++ +
Sbjct: 226 QQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRN 285

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            + G +L DMYA+C  +D A  VF  ++  D+ S+ ++I   +  G   +A+ +FSEM  
Sbjct: 286 SYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRD 345

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G+ PD +T + +L AC     + +G      + ++  L         ++ ++ R     
Sbjct: 346 SGLRPDGITVMALLCACVGYDALHQGRSIHSYLVKL-GLGGDVIVSNSLLSMYARCLDFS 404

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
            A+D+        D   W ++L AC  H  +E    +   L R  P  D   I + N+ S
Sbjct: 405 SAMDVFHETH-DRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLD--RISLNNVLS 461

Query: 540 SK 541
           + 
Sbjct: 462 AS 463


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 194/571 (33%), Positives = 315/571 (55%), Gaps = 11/571 (1%)

Query: 42  QFHAFIIKTG----SPQHQTQI-LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H   +  G    SP   T + +Y K   L    ++ + S Q+  V     I   + N 
Sbjct: 180 QLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNG 239

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
              EA  L+R M+  G+ P++ T    L    +  SL+  +++H Y ++ A++ +V++ +
Sbjct: 240 LMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKS 299

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+ +Y  C  ++   K+        +  D V  TT+I  YV      EA+ +F  + Q 
Sbjct: 300 ALIDIYFKCRDVEMAQKILC----QSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQE 355

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            ++P  +    +  A + L  L+LG ++H  I      L     + +A++DMY KCG + 
Sbjct: 356 RMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT--KLDEKCHVGSAILDMYAKCGRLD 413

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A +VF+ +  K+ + WNSMI   +  G+  EA+++FR+M   G + D  ++   L++CA
Sbjct: 414 LACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACA 473

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           N+  L  GK +H  + K  + +D +  ++L+DMYAKCG ++ +  VF  M+ R+  S+ +
Sbjct: 474 NLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNS 533

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I     HG   + L +F EM + GI+PD VTF+G++SAC HAG V+EG +++  M+  Y
Sbjct: 534 IISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEY 593

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            +  + EHY C+ D+FGRAG + EA + I SMP  PDA VWG LLGAC IH  VELAE+ 
Sbjct: 594 GIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVA 653

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            ++L   +P   G Y+L+ N+ +   +W++ LK+R  MKER V+K PG S +EV    + 
Sbjct: 654 SKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHM 713

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           F   D SHP T +IY +LD ++ + K  GY+
Sbjct: 714 FVAADGSHPLTAQIYSVLDSLLLELKKEGYV 744



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 201/410 (49%), Gaps = 10/410 (2%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+  Y +ML  G+ P+ YT PYV+KAC   +S+++G+ VH       L  +V+V ++L++
Sbjct: 42  ALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIK 101

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           LYA  G +     LF        Q+D V W  ++  YVK      AI  F +M  + ++P
Sbjct: 102 LYAENGHLSDAQYLF----DNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKP 157

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           + +    VLS C+    L LG ++H         L  D  + N L+ MY KC  + +ARK
Sbjct: 158 NSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLEL--DSPVANTLLAMYSKCQCLQAARK 215

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           +FD  P  ++VSWN +I+G    G   EA  +FR M   G+KPD  T    L     +  
Sbjct: 216 LFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLS 275

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L+  K +H Y+ ++ +  D F+ +AL+D+Y KC  ++ A  +       D    T MI G
Sbjct: 276 LKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISG 335

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
             ++GK  +AL+ F  + Q  ++P  VTF  +  A   AGL        L  S +     
Sbjct: 336 YVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPA--FAGLAALNLGKELHGSIIKTKLD 393

Query: 461 QTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           +  H G  ++D++ + G +  A  +   +    DA  W +++ +C  + +
Sbjct: 394 EKCHVGSAILDMYAKCGRLDLACRVFNRIT-EKDAICWNSMITSCSQNGR 442



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 139/484 (28%), Positives = 225/484 (46%), Gaps = 53/484 (10%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N +   AI ++ EM    + PN+ T   VL  C     L +G Q+H  ++   L  + 
Sbjct: 135 VKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDS 194

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V NTL+ +Y+ C  ++A  KLF        Q DLVSW  +I  YV+     EA   F  
Sbjct: 195 PVANTLLAMYSKCQCLQAARKLF----DTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRG 250

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M  A ++PD +     L   ++L  L    +IH YI  +   L  DVF+ +ALID+Y KC
Sbjct: 251 MISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVL--DVFLKSALIDIYFKC 308

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
            ++  A+K+  +    + V   +MI+G    G+ KEAL+ FR +    +KP   T   + 
Sbjct: 309 RDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIF 368

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            + A +  L LGK +H  + K  ++    +G+A++DMYAKCGR+D A  VF  +  +D  
Sbjct: 369 PAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAI 428

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA----------GLV 442
            + +MI   + +G+  +A+++F +M   G   D V+  G LSAC++           GL+
Sbjct: 429 CWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLM 488

Query: 443 EEG------------------CKHFLDMSRVYN-LQPQTE-HYGCMVDLFGRAGLIREAL 482
            +G                  C +     RV++ +Q + E  +  ++  +G  G ++E L
Sbjct: 489 IKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECL 548

Query: 483 DLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
            L   M    + PD   +  ++ AC    +V+              EG   Y LMT  Y 
Sbjct: 549 ALFHEMLRNGIQPDHVTFLGIISACGHAGQVD--------------EGIRYYHLMTEEYG 594

Query: 540 SKNR 543
              R
Sbjct: 595 IPAR 598



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 137/287 (47%), Gaps = 7/287 (2%)

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y   G +K    LF+  Q         +W  +I+ +  M     A+L +  M  A + P
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTS----AWNWMIRGFTMMGQFNYALLFYLKMLGAGVSP 56

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D      V+ AC  L  + +G  +H   T N   L  DVF+ ++LI +Y + G++  A+ 
Sbjct: 57  DKYTFPYVVKACCGLKSVKMGKIVHE--TVNLMGLKEDVFVGSSLIKLYAENGHLSDAQY 114

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           +FD +P K+ V WN M+ G    G    A+ IF  M+   +KP+  T  CVL+ CA+   
Sbjct: 115 LFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAM 174

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L+LG  +H       +  D  + N L+ MY+KC  +  A  +F +    D+ S+  +I G
Sbjct: 175 LDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISG 234

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
              +G   +A  +F  M   GI+PD +TF   L  C +  L  + CK
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITFASFL-PCVNELLSLKHCK 280


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 187/510 (36%), Positives = 301/510 (59%), Gaps = 12/510 (2%)

Query: 89  IIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           +I C + +    EA+ ++ +M    + PN  T+  VL AC +   ++ G+ VH + ++ A
Sbjct: 273 MISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRA 332

Query: 148 LLSNV-YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
           +   + ++   LM LYA  G ++  HK+F   +    ++ ++SW TLI  + +   P EA
Sbjct: 333 MDPELDFLGPALMELYADTGNLRDCHKVFETIK----EKTILSWNTLISIFTRNGQPEEA 388

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN-HFNLSPDVFIHNAL 265
           +L F  M    L PD   L   LSAC  +    LG +IH YI    +FN     F+ NAL
Sbjct: 389 LLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFN----DFVQNAL 444

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           IDMY KCG + SA K+F+++  K++V+WNSMI G +  G   EA+ +F +M    +K D 
Sbjct: 445 IDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDK 504

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
            T + V+ +C+++G+LE GKWVH  L    +  D ++  AL DMY+KCG +  A GVF  
Sbjct: 505 LTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDR 564

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
           M  R + S++ MI G  +HG+    + +F++M   GI+P+++TF+ +LSACSHAG VEEG
Sbjct: 565 MSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEG 624

Query: 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505
             +F  MS  + ++P+ +H+ CMVDL  RAG +  A  +I S+P   ++ +WGALL  C+
Sbjct: 625 KLYFNSMSE-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCR 683

Query: 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGC 565
           IH ++++ + + +NL+  +    G Y L++NIY+ +  W +  K+R  MK + ++K PG 
Sbjct: 684 IHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGY 743

Query: 566 SLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           S +E+  + Y F  GD SH +T +IY+ L+
Sbjct: 744 STIEIDKKIYRFGPGDTSHSQTKDIYRFLE 773



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 229/426 (53%), Gaps = 12/426 (2%)

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           + ++  + N    E + ++ +M+ + + P++ T+  V +AC +  SLR+G+ VH Y ++ 
Sbjct: 171 SIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRR 230

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            + SN  + N+L+ +Y   G + +  +LF         R    WT +I  Y +     EA
Sbjct: 231 EIESNASLNNSLIVMYGKLGDLYSAERLF----ENVPCRMTAPWTPMISCYNQSGCFQEA 286

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F  M +  + P+ + +V VL AC++LG +  G  +H ++     +   D F+  AL+
Sbjct: 287 LNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELD-FLGPALM 345

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           ++Y   GN+    KVF+ +  K ++SWN++I+  T  GQ +EAL +F +MQ  GL PD +
Sbjct: 346 ELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSY 405

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           +L   L++C  I + +LG  +H Y+ K   N + F+ NAL+DMYAKCG +  A  +F  +
Sbjct: 406 SLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKI 464

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG- 445
           K + + ++ +MI G + +G + +A+ +F +M    ++ D++TF+ V+ ACSH G +E+G 
Sbjct: 465 KEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGK 524

Query: 446 -CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
              H L M   Y L+  +     + D++ + G ++ A  +   M        W  ++   
Sbjct: 525 WVHHKLIM---YGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMS-ERSIVSWSVMIAGY 580

Query: 505 KIHAKV 510
            +H ++
Sbjct: 581 GMHGQI 586



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 126/484 (26%), Positives = 236/484 (48%), Gaps = 24/484 (4%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTG---SPQHQTQIL--YDKIISLSRGNEIENLSLQNPQV 83
           P      +   L Q HA +  TG    P   T+++  Y +I        + + +   P  
Sbjct: 6   PLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFD-TFPKPDS 64

Query: 84  YLYNFIIQCLSNANPLE-AIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQQVHA 141
           +++  +I+C       E A++LY EM+ +     + +  P VLKAC     L VG +VH 
Sbjct: 65  FMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHG 124

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             +K    S+  V  +L+ +Y     +    K F         RD+V+W++++  +V+  
Sbjct: 125 RVIKCGFESDAVVETSLLCMYGEMSCLDDACKAF----DTMPIRDVVAWSSIVLNFVQNG 180

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
             +E +  F  M    + PD + ++ V  ACS+LG L LG  +H Y+      +  +  +
Sbjct: 181 QASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRRE--IESNASL 238

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
           +N+LI MY K G++ SA ++F+ +P +    W  MI+     G F+EAL++F +MQ   +
Sbjct: 239 NNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKM 298

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD-GFIGNALVDMYAKCGRIDQAF 380
           +P+  T+V VL +CA +G ++ G+ VH ++ +  ++ +  F+G AL+++YA  G +    
Sbjct: 299 EPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCH 358

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF ++K + + S+  +I     +G+  +AL +F +M   G+ PD  +    LSAC    
Sbjct: 359 KVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTIS 418

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA---LDLIKSMPLVPDAFVW 497
             + G +    + +  N     ++   ++D++ + G +  A    + IK   LV     W
Sbjct: 419 FSQLGAQIHGYIIKTGNFNDFVQN--ALIDMYAKCGFVHSANKMFEKIKEKSLV----TW 472

Query: 498 GALL 501
            +++
Sbjct: 473 NSMI 476


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 181/496 (36%), Positives = 286/496 (57%), Gaps = 11/496 (2%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           GL  ++ T   ++K C  ++++  G  +  +         +++ N L+ +Y    L+   
Sbjct: 56  GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDA 115

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
           H+LF   Q PQ  R+++SWTT+I AY K     +A+     M + N+RP+      VL +
Sbjct: 116 HQLFD--QMPQ--RNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           C+ + D+ +   +H  I      L  DVF+ +ALID++ K G    A  VFDEM   + +
Sbjct: 172 CNGMSDVRM---LHCGIIKE--GLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAI 226

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
            WNS+I G     +   AL++F+RM+  G   +  TL  VL +C  +  LELG   H ++
Sbjct: 227 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            K   + D  + NALVDMY KCG ++ A  VF  MK RDV +++ MI GLA +G + +AL
Sbjct: 287 VK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEAL 344

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
            +F  M   G +P+ +T VGVL ACSHAGL+E+G  +F  M ++Y + P  EHYGCM+DL
Sbjct: 345 KLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDL 404

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
            G+AG + +A+ L+  M   PDA  W  LLGAC++   + LAE   + ++  +PE  G Y
Sbjct: 405 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTY 464

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
            L++NIY++  +W    ++R +M++R +KK PGCS +EV  + + F  GD SHP+ +E+ 
Sbjct: 465 TLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVS 524

Query: 592 KLLDEIMHQSKNHGYI 607
           K L++++H+    GY+
Sbjct: 525 KKLNQLIHRLTGIGYV 540



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 172/347 (49%), Gaps = 20/347 (5%)

Query: 91  QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
           +C  +   LE + L   ML   + PN YT   VL++C     +R+   +H   +K  L S
Sbjct: 139 KCKIHQKALELLVL---MLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLES 192

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           +V+V + L+ ++A  G  +    +F          D + W ++I  + +      A+  F
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVF----DEMVTGDAIVWNSIIGGFAQNSRSDVALELF 248

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             M +A    +   L  VL AC+ L  L LG++ H +I         D+ ++NAL+DMY 
Sbjct: 249 KRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV----KYDQDLILNNALVDMYC 304

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG++  A +VF++M  ++V++W++MI+GL   G  +EAL +F RM+  G KP+  T+V 
Sbjct: 305 KCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVG 364

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCGRIDQAFGVFRSMKC 388
           VL +C++ G LE G W +    K     D    +   ++D+  K G++D A  +   M+C
Sbjct: 365 VLFACSHAGLLEDG-WYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMEC 423

Query: 389 R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
             D  ++  ++    +       L  ++    + ++P++     +LS
Sbjct: 424 EPDAVTWRTLLGACRVQRNM--VLAEYAAKKVIALDPEDAGTYTLLS 468



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 139/306 (45%), Gaps = 19/306 (6%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENLSLQNPQV-- 83
           S  L S   +  ++  H  IIK G  S       L D    L  G   + LS+ +  V  
Sbjct: 166 SSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKL--GEPEDALSVFDEMVTG 223

Query: 84  --YLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
              ++N II   + N+    A+ L++ M   G +    TL  VL+AC     L +G Q H
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 283

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            + +K     ++ + N L+ +Y  CG ++   ++F    +   +RD+++W+T+I    + 
Sbjct: 284 VHIVKYD--QDLILNNALVDMYCKCGSLEDALRVF----NQMKERDVITWSTMISGLAQN 337

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
            Y  EA+  F  M  +  +P+ + +V VL ACS  G L  G    R +    + + P   
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK-KLYGIDPVRE 396

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            +  +ID+  K G +  A K+ +EM  + + V+W +++     R Q    L  +   + +
Sbjct: 397 HYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC--RVQRNMVLAEYAAKKVI 454

Query: 320 GLKPDD 325
            L P+D
Sbjct: 455 ALDPED 460



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 21/222 (9%)

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           L ++     A+     +Q  GL  D  T   ++  C +   +  G  +  +L  N     
Sbjct: 36  LCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPM 95

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            F+ N L++MY K   ++ A  +F  M  R+V S+T MI   +      KAL++   M +
Sbjct: 96  MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155

Query: 420 VGIEPDEVTFVGVLSACS--------HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
             + P+  T+  VL +C+        H G+++EG            L+        ++D+
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEG------------LESDVFVRSALIDV 203

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           F + G   +AL +   M +  DA VW +++G    +++ ++A
Sbjct: 204 FAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVA 244


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 180/503 (35%), Positives = 290/503 (57%), Gaps = 8/503 (1%)

Query: 107 EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
           EM I+GL         VL  C    ++R GQ+VHA+ +KT     VY+   L+ LY  C 
Sbjct: 467 EMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCR 526

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
            +    ++         +R++VSWT +I  Y +  Y +EA+  F +M  +   P+     
Sbjct: 527 CLGDARRVLD----EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFA 582

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
            VL++C+      LG +IH  +    F     +F+ ++L+DMY K G I  AR+VFD +P
Sbjct: 583 TVLTSCTSSSGFQLGRQIHSLVIKTSFE--SHIFVGSSLLDMYAKAGKICEARRVFDGLP 640

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
            ++VVS  ++I+G    G  +EALD+FRR+Q  G++ +  T   VL + + +  L+ G+ 
Sbjct: 641 ERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQ 700

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           VH+++ +  +     + N+L+DMY+KCG +  +  +F SM  R V S+ AM+VG + HG 
Sbjct: 701 VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGL 760

Query: 407 AWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDM-SRVYNLQPQTEH 464
             +A+++F  M +   ++PD VTF+ VLS CSH G+ + G + F +M ++    +P+ EH
Sbjct: 761 GREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEH 820

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           YGC+VDLFGRAG + EA + IK MP  P A +WG+LLGAC++H  V + E V   L+  E
Sbjct: 821 YGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIE 880

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
            E  G Y++++N+Y+S  RW +   +R+ MKE+ V K PG S +E+    + F   D+SH
Sbjct: 881 SENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSH 940

Query: 585 PKTLEIYKLLDEIMHQSKNHGYI 607
           P+  E++  + E+  + K  GY+
Sbjct: 941 PRKEEVFAKVRELSIKIKEAGYV 963



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 194/379 (51%), Gaps = 24/379 (6%)

Query: 33  SSKSVGQLKQFHAFIIKTG-SP----QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYN 87
           S  ++ + ++ HA +IKT   P    + +  +LY+K   L     + +   +   V    
Sbjct: 489 SQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTA 548

Query: 88  FIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
            I          EA+ L+ EML+ G  PN +T   VL +C  S   ++G+Q+H+  +KT+
Sbjct: 549 MISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTS 608

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
             S+++V ++L+ +YA  G I    ++F        +RD+VS T +I  Y ++    EA+
Sbjct: 609 FESHIFVGSSLLDMYAKAGKICEARRVF----DGLPERDVVSCTAIISGYAQLGLDEEAL 664

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F  + +  +R + +    VL+A S L  L  G ++H ++      L   V + N+LID
Sbjct: 665 DLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL--RAKLPFYVVLQNSLID 722

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDF 326
           MY KCG++  +R++FD MP + V+SWN+M+ G +  G  +EA+++F+ M+    +KPD  
Sbjct: 723 MYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSV 782

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-----NALVDMYAKCGRIDQAFG 381
           T + VL+ C++ G  + G  +   +       DGF         +VD++ + GR+++AF 
Sbjct: 783 TFLAVLSGCSHGGMEDRGLEIFYEMVN---QKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 839

Query: 382 VFRSMKCRDVYSYTAMIVG 400
             + M     +  TA I G
Sbjct: 840 FIKKMP----FEPTAAIWG 854


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 181/496 (36%), Positives = 286/496 (57%), Gaps = 11/496 (2%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           GL  ++ T   ++K C  ++++  G  +  +         +++ N L+ +Y    L+   
Sbjct: 56  GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDA 115

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
           H+LF   Q PQ  R+++SWTT+I AY K     +A+     M + N+RP+      VL +
Sbjct: 116 HQLFD--QMPQ--RNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           C+ + D+ +   +H  I      L  DVF+ +ALID++ K G    A  VFDEM   + +
Sbjct: 172 CNGMSDVRM---LHCGIIKE--GLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAI 226

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
            WNS+I G     +   AL++F+RM+  G   +  TL  VL +C  +  LELG   H ++
Sbjct: 227 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            K   + D  + NALVDMY KCG ++ A  VF  MK RDV +++ MI GLA +G + +AL
Sbjct: 287 VK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEAL 344

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
            +F  M   G +P+ +T VGVL ACSHAGL+E+G  +F  M ++Y + P  EHYGCM+DL
Sbjct: 345 KLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDL 404

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
            G+AG + +A+ L+  M   PDA  W  LLGAC++   + LAE   + ++  +PE  G Y
Sbjct: 405 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTY 464

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
            L++NIY++  +W    ++R +M++R +KK PGCS +EV  + + F  GD SHP+ +E+ 
Sbjct: 465 TLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVS 524

Query: 592 KLLDEIMHQSKNHGYI 607
           K L++++H+    GY+
Sbjct: 525 KKLNQLIHRLTGIGYV 540



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 172/347 (49%), Gaps = 20/347 (5%)

Query: 91  QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
           +C  +   LE + L   ML   + PN YT   VL++C     +R+   +H   +K  L S
Sbjct: 139 KCKIHQKALELLVL---MLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLES 192

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           +V+V + L+ ++A  G  +    +F          D + W ++I  + +      A+  F
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVF----DEMVTGDAIVWNSIIGGFAQNSRSDVALELF 248

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             M +A    +   L  VL AC+ L  L LG++ H +I         D+ ++NAL+DMY 
Sbjct: 249 KRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV----KYDQDLILNNALVDMYC 304

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG++  A +VF++M  ++V++W++MI+GL   G  +EAL +F RM+  G KP+  T+V 
Sbjct: 305 KCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVG 364

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCGRIDQAFGVFRSMKC 388
           VL +C++ G LE G W +    K     D    +   ++D+  K G++D A  +   M+C
Sbjct: 365 VLFACSHAGLLEDG-WYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMEC 423

Query: 389 R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
             D  ++  ++    +       L  ++    + ++P++     +LS
Sbjct: 424 EPDAVTWRTLLGACRVQRNM--VLAEYAAKKVIALDPEDAGTYTLLS 468



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 139/306 (45%), Gaps = 19/306 (6%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENLSLQNPQV-- 83
           S  L S   +  ++  H  IIK G  S       L D    L  G   + LS+ +  V  
Sbjct: 166 SSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKL--GEPEDALSVFDEMVTG 223

Query: 84  --YLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
              ++N II   + N+    A+ L++ M   G +    TL  VL+AC     L +G Q H
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 283

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            + +K     ++ + N L+ +Y  CG ++   ++F    +   +RD+++W+T+I    + 
Sbjct: 284 VHIVKYD--QDLILNNALVDMYCKCGSLEDALRVF----NQMKERDVITWSTMISGLAQN 337

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
            Y  EA+  F  M  +  +P+ + +V VL ACS  G L  G    R +    + + P   
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK-KLYGIDPVRE 396

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            +  +ID+  K G +  A K+ +EM  + + V+W +++     R Q    L  +   + +
Sbjct: 397 HYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC--RVQRNMVLAEYAAKKVI 454

Query: 320 GLKPDD 325
            L P+D
Sbjct: 455 ALDPED 460



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 21/222 (9%)

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           L ++     A+     +Q  GL  D  T   ++  C +   +  G  +  +L  N     
Sbjct: 36  LCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPM 95

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            F+ N L++MY K   ++ A  +F  M  R+V S+T MI   +      KAL++   M +
Sbjct: 96  MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155

Query: 420 VGIEPDEVTFVGVLSACS--------HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
             + P+  T+  VL +C+        H G+++EG            L+        ++D+
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEG------------LESDVFVRSALIDV 203

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           F + G   +AL +   M +  DA VW +++G    +++ ++A
Sbjct: 204 FAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVA 244


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 194/545 (35%), Positives = 297/545 (54%), Gaps = 43/545 (7%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P EAI LY  +  +G+ P+      V KAC  S      ++VH  +++  ++S+ ++ N 
Sbjct: 113 PNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNA 172

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+  Y  C  ++   ++F         +D+VSWT++   YV    P   +  F +M    
Sbjct: 173 LIHAYGKCKCVEGARRVFD----DLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNG 228

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++P+ + L  +L ACS+L DL  G  IH +   +   +  +VF+ +AL+ +Y +C ++  
Sbjct: 229 VKPNSVTLSSILPACSELKDLKSGRAIHGFAVRH--GMIENVFVCSALVSLYARCLSVKQ 286

Query: 278 ARKVFDEMPVKNVVSWN-----------------------------------SMIAGLTH 302
           AR VFD MP ++VVSWN                                   ++I G   
Sbjct: 287 ARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCME 346

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
            GQ ++A+++ R+MQ LG KP+  T+   L +C+ +  L +GK VH Y+ ++ +  D   
Sbjct: 347 NGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTT 406

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
             ALV MYAKCG ++ +  VF  M CR DV ++  MI+  A+HG   + L +F  M Q G
Sbjct: 407 MTALVYMYAKCGDLNLSRNVF-DMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSG 465

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           I+P+ VTF GVLS CSH+ LVEEG + F  M R + ++P   HY CMVD+F RAG + EA
Sbjct: 466 IKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEA 525

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
            + I+ MP+ P A  WGALLGAC+++  VELA+I    L   EP   G Y+ + NI  + 
Sbjct: 526 YEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTA 585

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQS 601
             W EA + R  MKER + KTPGCS ++V    + F  GDK++ ++ +IY  LDE+  + 
Sbjct: 586 KLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKM 645

Query: 602 KNHGY 606
           K+ GY
Sbjct: 646 KSAGY 650



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 172/352 (48%), Gaps = 19/352 (5%)

Query: 106 REMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC 165
           RE++I G     + LP        +QS  + +Q+ +  +  ++ +N+     L       
Sbjct: 23  RELIIFG-----FVLPPFFSITHSTQSSSIWKQLTSTKVAPSVPTNIPSHLGLR------ 71

Query: 166 GLIKAVHKLFHFRQHPQ-----AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
            L+KA   +  FR+  Q      Q D  + +TLI A+     P EAI  +  +    ++P
Sbjct: 72  -LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKP 130

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
              + + V  AC   GD S   ++H         +  D F+ NALI  Y KC  +  AR+
Sbjct: 131 HNSVFLTVAKACGASGDASRVKEVHDDAI--RCGMMSDAFLGNALIHAYGKCKCVEGARR 188

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VFD++ VK+VVSW SM +   + G  +  L +F  M   G+KP+  TL  +L +C+ +  
Sbjct: 189 VFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKD 248

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L+ G+ +H +  ++ +  + F+ +ALV +YA+C  + QA  VF  M  RDV S+  ++  
Sbjct: 249 LKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTA 308

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
              + +  K L +FS+MS  G+E DE T+  V+  C   G  E+  +    M
Sbjct: 309 YFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKM 360



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 117/240 (48%), Gaps = 8/240 (3%)

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTL 120
           YDK ++L   +++ +  ++  +      I  C+ N    +A+ + R+M   G  PN  T+
Sbjct: 315 YDKGLALF--SQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITI 372

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
              L AC   +SLR+G++VH Y  +  L+ ++     L+ +YA CG +     +F     
Sbjct: 373 SSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDM--- 429

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
              ++D+V+W T+I A        E +L F  M Q+ ++P+ +    VLS CS    +  
Sbjct: 430 -ICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEE 488

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS-WNSMIAG 299
           G++I   +  +H  + PD   +  ++D++ + G +  A +    MP++   S W +++  
Sbjct: 489 GLQIFNSMGRDHL-VEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGA 547



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 2/239 (0%)

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L+   L  G+   A+++FD +P  +  + +++I+  T RG   EA+ ++  ++  G+KP 
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
           +   + V  +C   G     K VH    +  + +D F+GNAL+  Y KC  ++ A  VF 
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            +  +DV S+T+M       G     L +F EM   G++P+ VT   +L ACS    ++ 
Sbjct: 192 DLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKS 251

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           G +     +  + +         +V L+ R   +++A  +   MP   D   W  +L A
Sbjct: 252 G-RAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPH-RDVVSWNGVLTA 308


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 192/504 (38%), Positives = 281/504 (55%), Gaps = 43/504 (8%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+ AY+++  +     +  +L+++ +    I   HKLF F   P     +  +  LIQA
Sbjct: 5   KQIQAYTLRNGIEHTKQLIVSLLQIPS----IPYAHKLFDFIPKPT----VFLYNKLIQA 56

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y       +    +  MC     P+      + SAC+ L     G  +H +   + F   
Sbjct: 57  YSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGC- 115

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            DVF   AL+DMY K G +  ARK FDEM V++V +WNSMIAG    G  + AL++FR M
Sbjct: 116 -DVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLM 174

Query: 317 --------------------------------QGLGLKPDDFTLVCVLNSCANIGWLELG 344
                                           +   ++P++ TL  VL +CAN+G LE+G
Sbjct: 175 PARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVG 234

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAI 403
           + +  Y   N    + ++ NAL++MYA+CGRID+A+GVF  +  R ++ S+ +MI+GLA+
Sbjct: 235 ERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAV 294

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           HG+  +A+++F +M + G  PD+VTFVGVL AC+H G+V EG   F  M R +++ P+ E
Sbjct: 295 HGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLE 354

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           HYGCMVDL GRAG +REA DLI  MP+ PD+ VWG LLGAC  H  VELAE     L   
Sbjct: 355 HYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELAEKAAGALFEL 414

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           EP   G Y++++NIY++  RW    +LRK MK  K+ K  G S +E  G  ++F   D+S
Sbjct: 415 EPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFIEEGGHIHKFIVEDRS 474

Query: 584 HPKTLEIYKLLDEIMHQSKNHGYI 607
           H ++ EIY LLDE+  + K HG +
Sbjct: 475 HSRSDEIYALLDEVSMKMKLHGNV 498



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 126/473 (26%), Positives = 219/473 (46%), Gaps = 77/473 (16%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYD--KIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           +LKQ  A+ ++ G  +H  Q++    +I S+   +++ +  +  P V+LYN +IQ  S+ 
Sbjct: 3   RLKQIQAYTLRNGI-EHTKQLIVSLLQIPSIPYAHKLFDF-IPKPTVFLYNKLIQAYSSH 60

Query: 97  NPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
            P  +  +LY +M ++G  PN ++  ++  AC    S + G+ +H + +K+    +V+  
Sbjct: 61  GPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFAL 120

Query: 156 NTLMRLYAVCGLIKAVHKLFH-----------------------------FRQHPQAQRD 186
             L+ +YA  GL+    K F                              FR  P   R+
Sbjct: 121 TALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMP--ARN 178

Query: 187 LVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           + SWT +I  Y +     +A+  F  M  +  +RP+ + L  VL AC+ LG L +G +I 
Sbjct: 179 VTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIE 238

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMIAGLTHRG 304
            Y   N +    ++++ NAL++MY +CG I  A  VF+E+   +N+ SWNSMI GL   G
Sbjct: 239 VYARGNGY--FKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHG 296

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
           +  EA+++F +M   G  PDD T V VL +C + G +  G+     ++++          
Sbjct: 297 RCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERD---------- 346

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
                          F +   ++      Y  M+  L   G+  +A D+   M    +EP
Sbjct: 347 ---------------FSIAPKLE-----HYGCMVDLLGRAGELREAHDLILRMP---MEP 383

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE-HYGCMVDLFGRAG 476
           D V +  +L ACS  G VE   K       ++ L+P    +Y  + +++  AG
Sbjct: 384 DSVVWGTLLGACSFHGHVELAEK---AAGALFELEPSNPGNYVILSNIYATAG 433


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 203/585 (34%), Positives = 311/585 (53%), Gaps = 23/585 (3%)

Query: 34  SKSVGQLKQFHAFIIKTGSPQ-----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           S+ +   ++ HA +I+TG  +     +    +Y K+  +     +     +   V    F
Sbjct: 215 SRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAF 274

Query: 89  IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I  C+ + +   A+ L  +M   GL+PN +TL  +LKAC  S +  +G+Q+H + +K   
Sbjct: 275 ISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANA 334

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            S+ Y+   L+ +YA  GL+    K+F +      QRDLV W  LI          EA+ 
Sbjct: 335 DSDNYIAFGLVDMYAKHGLLDDAKKVFDW----IPQRDLVLWNALISGCSHGAQHAEALS 390

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR------YITDNHFNLSPDVFIH 262
            F  M +     +   L  VL + + L  +S   ++H       +++D+H        + 
Sbjct: 391 LFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSH--------VV 442

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           N LID Y KC  +  A +VF++    +++++ SMI  L+     ++A+ +F  M   GL 
Sbjct: 443 NGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLD 502

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD F L  +LN+CA++   E GK VH +L K    +D F GNALV  YAKCG I+ A   
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLA 562

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F  +  + V S++AMI GLA HG   +ALD+F  M    I P+ +T   VL AC+HAGLV
Sbjct: 563 FSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLV 622

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           +E  ++F  M  ++ ++   EHY CM+DL GRAG + +A++L+ SMP   +A VWGALL 
Sbjct: 623 DEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLA 682

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           A ++H   EL  +  E L   EPE  G ++L+ N Y+S   W +  K+RK MK+ KVKK 
Sbjct: 683 ASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKE 742

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           P  S VE+  + + F  GDKSHP+  +IY  LDE+       GY+
Sbjct: 743 PAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYV 787



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/411 (30%), Positives = 207/411 (50%), Gaps = 11/411 (2%)

Query: 30  RLESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLY 86
           R  +++S+ Q    HA ++K+G     ++     Y K         + +       V   
Sbjct: 13  RYAATQSLLQGAHIHAHLLKSGLFAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWS 72

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           + +    +NA P +A+  +R M    +  N + LP VLK    +     G Q+HA +M T
Sbjct: 73  SLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKC---APDAGFGTQLHALAMAT 129

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            L  +++V N L+ +Y   G +     +F        +R+ VSW  L+ AYVK D  + A
Sbjct: 130 GLGGDIFVANALVAMYGGFGFVDEARMVF---DEAGCERNTVSWNGLMSAYVKNDRCSHA 186

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F +M    ++P+      V++AC+   DL  G K+H  +    ++   DVF  NAL+
Sbjct: 187 VKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYD--KDVFTANALV 244

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           DMY K G+I  A  VF ++P  +VVSWN+ I+G    G  + AL++  +M+  GL P+ F
Sbjct: 245 DMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVF 304

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           TL  +L +CA  G   LG+ +H ++ K + ++D +I   LVDMYAK G +D A  VF  +
Sbjct: 305 TLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWI 364

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
             RD+  + A+I G +   +  +AL +F  M + G + +  T   VL + +
Sbjct: 365 PQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTA 415



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 222/467 (47%), Gaps = 29/467 (6%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+ ++ EM+  G+ PN +    V+ AC  S+ L  G++VHA  ++T    +V+  N L+ 
Sbjct: 186 AVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVD 245

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y+  G I+    +F        + D+VSW   I   V   +   A+     M  + L P
Sbjct: 246 MYSKLGDIRMAAVVF----GKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVP 301

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           +   L  +L AC+  G  +LG +IH ++     N   D +I   L+DMY K G +  A+K
Sbjct: 302 NVFTLSSILKACAGSGAFNLGRQIHGFMVKA--NADSDNYIAFGLVDMYAKHGLLDDAKK 359

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VFD +P +++V WN++I+G +H  Q  EAL +F RM+  G   +  TL  VL S A++  
Sbjct: 360 VFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEA 419

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           +   + VH   +K    +D  + N L+D Y KC  ++ A+ VF      D+ ++T+MI  
Sbjct: 420 ISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITA 479

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK---HFLD---MSR 454
           L+       A+ +F EM + G++PD      +L+AC+     E+G +   H +    MS 
Sbjct: 480 LSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 539

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
           V+           +V  + + G I +A DL  S         W A++G    H   + A 
Sbjct: 540 VFAGNA-------LVYTYAKCGSIEDA-DLAFSGLPEKGVVSWSAMIGGLAQHGHGKRAL 591

Query: 515 IVMENLV--RFEPEGDGAYILMTNIYSSKNRW---KEALKLRKKMKE 556
            V   +V     P     +I MT++  + N      EA +    MKE
Sbjct: 592 DVFHRMVDEHISPN----HITMTSVLCACNHAGLVDEAKRYFNSMKE 634



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/377 (31%), Positives = 188/377 (49%), Gaps = 16/377 (4%)

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVF-NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
           +QSL  G  +HA+ +K+ L +   VF N L+  Y+ C L  +  ++F     P      V
Sbjct: 17  TQSLLQGAHIHAHLLKSGLFA---VFRNHLLSFYSKCRLPGSARRVFDEIPDPCH----V 69

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
           SW++L+ AY     P +A+ +F  M   ++R +  +L +VL  C+   D   G ++H   
Sbjct: 70  SWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLK-CAP--DAGFGTQLHALA 126

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFK 307
                 L  D+F+ NAL+ MY   G +  AR VFDE    +N VSWN +++      +  
Sbjct: 127 MAT--GLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCS 184

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
            A+ +F  M   G++P++F   CV+N+C     LE G+ VH  + +   + D F  NALV
Sbjct: 185 HAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALV 244

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
           DMY+K G I  A  VF  +   DV S+ A I G  +HG    AL++  +M   G+ P+  
Sbjct: 245 DMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVF 304

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           T   +L AC+ +G    G +    M +          +G +VD++ + GL+ +A  +   
Sbjct: 305 TLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDDAKKVFDW 363

Query: 488 MPLVPDAFVWGALLGAC 504
           +P   D  +W AL+  C
Sbjct: 364 IPQ-RDLVLWNALISGC 379


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 213/561 (37%), Positives = 307/561 (54%), Gaps = 74/561 (13%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRG-----------NEIENLS 77
           P L + K+   LKQ HA +I  G   +    L D ++++S             N    L 
Sbjct: 10  PTLPNLKT---LKQIHALMIINGF-NNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLF 65

Query: 78  LQNPQ--VYLYNFIIQCLSNA-NPLEAIALYREM---LIKGLLPNTYTLPYVLKACWQSQ 131
            Q PQ   ++YN +I+  S + NPL AI+LY EM    +KG   ++YT P+VLKAC +  
Sbjct: 66  AQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKG---DSYTFPFVLKACTRLF 122

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
            +  G  VH   ++    SN  V NTL+  +A CG +     LF        + D+V+W+
Sbjct: 123 WVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFD----DSCKGDVVAWS 178

Query: 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
           +LI  Y                                   ++ GDL +  K+       
Sbjct: 179 SLIAGY-----------------------------------ARRGDLKVARKL------- 196

Query: 252 HFNLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
            FN  P  D+   N +I  Y+K G + SAR +FDE PVK+VVSWN+MIAG    G  K+A
Sbjct: 197 -FNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQA 255

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT-YLDKNHINTDGFIGNALVD 368
           L++F  M   G+ PD+ TL+ +L++CA++G LE GK VH   ++ +       +GNAL+D
Sbjct: 256 LELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALID 315

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           MYAKCG I ++  VF S+  +DV S+ ++IVG+A+HG   ++L +F  M +  I P+E+T
Sbjct: 316 MYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEIT 375

Query: 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
           FVGVL ACSHAG ++EG K+F  MS  Y ++P   H GCMVD+ GRAGL++EA   I SM
Sbjct: 376 FVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSM 435

Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548
            + P+A +W  LL ACK+H  VELA++  E L     +  G Y+LM+N+Y+S+  W  A 
Sbjct: 436 KIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYASRGEWDGAE 495

Query: 549 KLRKKMKERKVKKTPGCSLVE 569
           K+RK M +  V K  G S VE
Sbjct: 496 KVRKLMDDSGVTKIRGSSFVE 516


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 194/591 (32%), Positives = 323/591 (54%), Gaps = 26/591 (4%)

Query: 34  SKSVGQLKQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           ++S  + +  H  ++KTG   +   +     +Y K  ++     + +  L+   V     
Sbjct: 80  TRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTL 139

Query: 89  IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           ++  + N+ P  AI +++EML  G  P+ YTL  VL AC   QSL++G Q HAY +K  +
Sbjct: 140 MVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHV 199

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             +  V + L  LY+ CG ++   K F   +    +++++SWT+ + A      P + + 
Sbjct: 200 DFDASVGSALCSLYSKCGRLEDALKTFSRIR----EKNVISWTSAVSACADNGAPVKGLR 255

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F +M   +++P+   L   LS C ++  L LG +++       F    ++ + N+L+ +
Sbjct: 256 LFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIK--FGYESNLRVRNSLLYL 313

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAG------LT-------HRGQFKEALDIFRR 315
           YLK G I  A ++F+ M   ++V+WN+MIAG      LT       HRG   EAL +F +
Sbjct: 314 YLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGS--EALKLFSK 371

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           +   G+KPD FTL  VL+ C+ +  +E G+ +H    K    +D  +  +L+ MY+KCG 
Sbjct: 372 LNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGS 431

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           I++A   F  M  R + ++T+MI G + HG + +AL IF +MS  G+ P+ VTFVGVLSA
Sbjct: 432 IERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSA 491

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           CSHAG+V +   +F  M + Y ++P  +HY CMVD+F R G + +AL+ IK M   P  F
Sbjct: 492 CSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEF 551

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           +W   +  CK H  +EL     E L+  +P+    Y+L+ N+Y S  R+++  ++RK M+
Sbjct: 552 IWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPETYVLLLNMYLSAERFEDVSRVRKMME 611

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           E KV K    S + +  + Y F+   K+HP++  I K L++++ + KN GY
Sbjct: 612 EEKVGKLKDWSWISIKDKVYSFKTNGKTHPQSSLICKSLEDLLAKVKNVGY 662



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 142/485 (29%), Positives = 224/485 (46%), Gaps = 66/485 (13%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+ C  ++S    Q VH + MKT    N +V + L+ +YA CG ++   ++F       
Sbjct: 73  LLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVF----DNM 128

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            +R++V+WTTL+  +V+   P  AI  F +M  A   P    L  VL ACS L  L LG 
Sbjct: 129 LRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGD 188

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           + H YI   H +   D  + +AL  +Y KCG +  A K F  +  KNV+SW S ++    
Sbjct: 189 QFHAYIIKYHVDF--DASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACAD 246

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
            G   + L +F  M  + +KP++FTL   L+ C  I  LELG  V++   K    ++  +
Sbjct: 247 NGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRV 306

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG-----------LAIHGKAWKAL 411
            N+L+ +Y K G I +A  +F  M    + ++ AMI G           L+   +  +AL
Sbjct: 307 RNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEAL 366

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACS-----------HA--------------------- 439
            +FS+++  G++PD  T   VLS CS           HA                     
Sbjct: 367 KLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMY 426

Query: 440 ---GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV---PD 493
              G +E   K FL+MS    +      +  M+  F + G+ ++AL + + M L    P+
Sbjct: 427 SKCGSIERASKAFLEMSTRTMIA-----WTSMITGFSQHGMSQQALHIFEDMSLAGVRPN 481

Query: 494 AFVWGALLGACKIHAKVELA----EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549
           A  +  +L AC     V  A    EI M+   + +P  D  Y  M +++    R ++AL 
Sbjct: 482 AVTFVGVLSACSHAGMVSQALNYFEI-MQKKYKIKPAMD-HYECMVDMFVRLGRLEQALN 539

Query: 550 LRKKM 554
             KKM
Sbjct: 540 FIKKM 544



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 2/176 (1%)

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
           V +L  C +       + VH ++ K   + + F+ + LV++YAKCG ++ A  VF +M  
Sbjct: 71  VPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLR 130

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           R+V ++T ++VG   + +   A+ +F EM   G  P   T   VL ACS    ++ G   
Sbjct: 131 RNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLG-DQ 189

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           F      Y++         +  L+ + G + +AL     +    +   W + + AC
Sbjct: 190 FHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIR-EKNVISWTSAVSAC 244


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 204/611 (33%), Positives = 337/611 (55%), Gaps = 50/611 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKT---GSPQHQTQILYDKIISLSRGNEIENLSLQN----PQV 83
           LE   S  Q KQ    +++    G     +++L+   +S     E+  L   +    P +
Sbjct: 38  LEKCNSRTQFKQILGHMMRNNLVGQTFPMSRLLFFSAVSHPENLELAILLFNHFTPYPNL 97

Query: 84  YLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           Y++N +I     +N  +A  +YR ML  G  P+  T  Y+L+    ++ +   +Q+H ++
Sbjct: 98  YIFNTMILGFPFSNE-KAFTIYRSMLQNGTYPDRQTFLYLLQT---TKFVAEVKQIHCHA 153

Query: 144 MKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
           +   LLS   Y+ N+L++ Y   G  +   +LF       + R++VS+ T+I  + K+  
Sbjct: 154 LVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFD----EMSDRNVVSYNTMILGFAKVGN 209

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
               +  F DM    L PD   ++ +L  C +LG+  LG  +H  I  +    S ++ ++
Sbjct: 210 ILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIG--SSNLILY 267

Query: 263 NALIDMYLKCGNIPSARKVFD-------------------------------EMPVKNVV 291
           NAL+DMY+KC  +  ARKVFD                               ++P +++V
Sbjct: 268 NALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIV 327

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           SWNS+I+G    G +     +F RM    +KPD  T+V ++++ A +G L+ G+W+H   
Sbjct: 328 SWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLA 387

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            K     + F G+AL+DMY KCG I++AF +F  +  +DV ++T MI G A HG   KAL
Sbjct: 388 VKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKAL 447

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
           ++FS M Q   +P++VTFV VL+ACSH+GLV+EG K F  M + Y+++P  EHYGC+VDL
Sbjct: 448 ELFSVM-QAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDL 506

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
             R+G + +A+ +I+ MP+ P   +WGA+L AC++H  +ELAE  +  L++ EPE +G Y
Sbjct: 507 LCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGY 566

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           IL++N+Y++  RW  +  +R+ M  R VKK  GCS V V G  ++F   +K HP+ ++I 
Sbjct: 567 ILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDIC 626

Query: 592 KLLDEIMHQSK 602
            +L  + ++ +
Sbjct: 627 SILSFLTNEMR 637


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 168/417 (40%), Positives = 256/417 (61%), Gaps = 2/417 (0%)

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
            ++I+ Y+ ++    ++  F  M + ++ PD      VL A ++L D  +G  IH  +  
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
             F    DV+   AL+ +Y  C +I  A ++FDEMP +N V+WN++I G TH  +F +A+
Sbjct: 118 MGF--ICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAI 175

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           D FR M   G +P + T+V VL++C+++G    GKW+H ++  N +  + F+G AL+DMY
Sbjct: 176 DAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMY 235

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           AKCG + +   VF  ++ ++VY++  +I G A++G+   AL  FS M     +PDEVTF+
Sbjct: 236 AKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFL 295

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
           GVL AC H GLV EG   F+ M + + LQP+ EHYGCMVDL GRAGL+ EAL+LI+SM +
Sbjct: 296 GVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI 355

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            PD  +W ALL AC++H   +L E +++ L+  EP     Y+L++NIYS + RW E  KL
Sbjct: 356 EPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKL 415

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R  M  R ++K PGCS +E+    YEF   +   P+   IYK LD ++ + K +GY+
Sbjct: 416 RGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYV 472



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 150/351 (42%), Gaps = 28/351 (7%)

Query: 16  INTFQQLSLLHQSPRLESS-------KSVGQL------KQFHAFIIKTG---SPQHQTQI 59
           +N+    +L+H+   L  S       K+  QL      K  H  +I+ G        T +
Sbjct: 71  LNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTAL 130

Query: 60  --LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNT 117
             LY   +S+S  +++ +   +   V     I     N   ++AI  +R ML  G  P+ 
Sbjct: 131 VHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSE 190

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
            T+  VL AC    +   G+ +H +     L  NV+V   L+ +YA CG +  V K+F  
Sbjct: 191 RTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVF-- 248

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
                 ++++ +W  LI  Y        A+ +F  M   N +PD +  + VL AC   G 
Sbjct: 249 --EEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGL 306

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSM 296
           ++ G +         F L P +  +  ++D+  + G +  A ++   M ++ + + W ++
Sbjct: 307 VTEG-RWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRAL 365

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS--CANIGWLELGK 345
           +      G  K    I +R+  + L+P++     +L++       W E+GK
Sbjct: 366 LCACRVHGNTKLGEYIIKRL--IELEPNNGENYVLLSNIYSRERRWAEVGK 414



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 118/270 (43%), Gaps = 15/270 (5%)

Query: 265 LIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           LID  +      S  ++F +     N    NSMI       +   +L IF  M    + P
Sbjct: 28  LIDDSVSRNGFESIARIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILP 87

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  T   VL + A +    +GK +H  + +     D +   ALV +Y  C  I  A  +F
Sbjct: 88  DSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLF 147

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             M  R+  ++ A+I G   + K  KA+D F  M   G +P E T V VLSACSH G   
Sbjct: 148 DEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFN 207

Query: 444 EG--CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           +G     F+  +R   L+        ++D++ + G + E   + + +    + + W  L+
Sbjct: 208 QGKWIHEFIYHNR---LRLNVFVGTALIDMYAKCGAVYEVEKVFEEIR-EKNVYTWNVLI 263

Query: 502 GACKIHAKVELA-----EIVMENLVRFEPE 526
               ++ + + A      ++MEN   F+P+
Sbjct: 264 SGYAMNGQGDAALQAFSRMLMEN---FKPD 290


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 161/351 (45%), Positives = 229/351 (65%), Gaps = 1/351 (0%)

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           D    N LI  + + G +  AR +FDEMP +N VSW++M+ G    G  +EAL +F +MQ
Sbjct: 158 DASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQ 217

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             G++PDD  LV VL +CA +G LE GKWVH YL  N+I    F+G ALVDMYAKCG + 
Sbjct: 218 AQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQ 277

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
               VF  MK ++V ++T MI GLA+HG+   +L +FS+M   G++PD++ F+G L AC+
Sbjct: 278 LGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACT 337

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           H GLV++G + F  M   Y ++P+ EHYGCMVDL  R GL+ EA D+++ MP+ PDA +W
Sbjct: 338 HTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIW 397

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GAL+  C+ H  VELAE V+++ +  EP+  GAY+L+ NIYS+  R   A ++R  M+E+
Sbjct: 398 GALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREK 457

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK-NHGYI 607
            V+KTPGCS VE+ G  ++F  GD SHP+  +I     EI  + +   GY+
Sbjct: 458 GVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYV 508



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 180/359 (50%), Gaps = 45/359 (12%)

Query: 85  LYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL----RVGQQV 139
           L++ +I+   S+  P  A+ LY  ++  GL P  +TLP +LK+   S ++    R+   V
Sbjct: 55  LHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAV 114

Query: 140 HAYSMKTALLSNVYVFNTLMRLYA-VCGLIKAVHKLFH-------------FRQHPQA-- 183
           HA++++  L   + V N L+R++A + G +   H L                  H +A  
Sbjct: 115 HAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGR 174

Query: 184 ------------QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
                       +R+ VSW+ ++  YV+     EA+  F  M    +RPD  +LV VL+A
Sbjct: 175 VADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAA 234

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           C++LG L  G  +H Y+  N+  ++  VF+  AL+DMY KCG +    +VF+ M  KNV+
Sbjct: 235 CAQLGALEQGKWVHGYLKANNIRMT--VFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVL 292

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK-----W 346
           +W +MI GL   G+  ++L +F +M+  G+KPDD   +  L +C + G ++ G+      
Sbjct: 293 AWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSM 352

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIH 404
           V+ Y  K  I   G     +VD+ A+ G + +A  +   M  + D   + A++ G   H
Sbjct: 353 VNNYGIKPKIEHYG----CMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFH 407


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 198/596 (33%), Positives = 328/596 (55%), Gaps = 35/596 (5%)

Query: 41  KQFHAFIIKTGSPQHQTQ-ILYDKIISLSRGNEIENL--SLQNPQVYLYNFIIQCLSNAN 97
           KQ H + ++ G  +  T   L      L R ++ + L  S  +  +  +N +I   S ++
Sbjct: 217 KQLHGYSLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSD 276

Query: 98  PL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA-LLSNVYVF 155
              EA+A +R M+++G+  +  T+  VL AC   + L VG+++HAY ++   L+ N +V 
Sbjct: 277 RFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVG 336

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           + L+ +Y  C  +++  ++F    H   +R +  W  +I  Y +     +A++ F +M +
Sbjct: 337 SALVDMYCNCRQVESGRRVF---DHILGRR-IELWNAMISGYARNGLDEKALILFIEMIK 392

Query: 216 -ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
            A L P+   +  V+ AC      S    IH Y     F    D ++ NAL+DMY + G 
Sbjct: 393 VAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFK--EDRYVQNALMDMYSRMGK 450

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ----------------- 317
           +  +  +FD M V++ VSWN+MI G    G++  AL +   MQ                 
Sbjct: 451 MDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEK 510

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
           G   KP+  TL+ VL  CA +  +  GK +H Y  +N + +D  +G+ALVDMYAKCG ++
Sbjct: 511 GGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLN 570

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVG----IEPDEVTFVGV 432
            +  VF  M  ++V ++  +I+   +HGK  +AL++F  M ++ G     +P+EVTF+ V
Sbjct: 571 LSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITV 630

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
            +ACSH+GL+ EG   F  M   + ++P ++HY C+VDL GRAG + EA +L+ +MP   
Sbjct: 631 FAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEF 690

Query: 493 DAF-VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           D    W +LLGAC+IH  VEL E+  +NL+  EP     Y+L++NIYSS   W +A+++R
Sbjct: 691 DKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVR 750

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K M++  VKK PGCS +E   E ++F  GD SHP++ +++  L+ +  + +  GY+
Sbjct: 751 KNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYV 806



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 224/440 (50%), Gaps = 33/440 (7%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL-LSNVYVFNTL 158
           EAI+ Y EM + G  P+ +  P VLKA    Q L+ G+Q+HA ++K     S+V V NTL
Sbjct: 75  EAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTL 134

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y  CG I  V K+F         RD VSW + I A  + +   +A+ +F  M   N+
Sbjct: 135 VNMYGKCGGIGDVCKVF----DRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENM 190

Query: 219 RPDGMILVIVLSACSKLG---DLSLGIKIHRY---ITDNHFNLSPDVFIHNALIDMYLKC 272
                 LV V  ACS LG    L LG ++H Y   + D         F +NAL+ MY K 
Sbjct: 191 ELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQ------KTFTNNALMAMYAKL 244

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G +  ++ +F+    +++VSWN+MI+  +   +F EAL  FR M   G++ D  T+  VL
Sbjct: 245 GRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVL 304

Query: 333 NSCANIGWLELGKWVHTY-LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
            +C+++  L++GK +H Y L  N +  + F+G+ALVDMY  C +++    VF  +  R +
Sbjct: 305 PACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRI 364

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQV-GIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
             + AMI G A +G   KAL +F EM +V G+ P+  T   V+ AC H       C+ F 
Sbjct: 365 ELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH-------CEAFS 417

Query: 451 DMSRVYN----LQPQTEHY--GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           +   ++     L  + + Y    ++D++ R G +  +  +  SM  V D   W  ++   
Sbjct: 418 NKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSME-VRDRVSWNTMITGY 476

Query: 505 KIHAKVELAEIVMENLVRFE 524
            +  +   A +++  + R E
Sbjct: 477 VLSGRYSNALVLLHEMQRME 496



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 170/359 (47%), Gaps = 40/359 (11%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
            R   SW   +++  + +   EAI ++ +M  +  RPD      VL A S L DL  G +
Sbjct: 54  SRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303
           IH       +  S  V + N L++MY KCG I    KVFD +  ++ VSWNS IA L   
Sbjct: 114 IHAAAVKFGYG-SSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG---WLELGKWVHTYLDKNHINTDG 360
            ++++AL+ FR MQ   ++   FTLV V  +C+N+G    L LGK +H Y  +   +   
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKT 231

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
           F  NAL+ MYAK GR+D +  +F S   RD+ S+  MI   +   +  +AL  F  M   
Sbjct: 232 FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 291

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEG-----------------------------CKHFLD 451
           G+E D VT   VL ACSH   ++ G                             C+    
Sbjct: 292 GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVES 351

Query: 452 MSRVYN--LQPQTEHYGCMVDLFGRAGLIREAL----DLIKSMPLVPDAFVWGALLGAC 504
             RV++  L  + E +  M+  + R GL  +AL    ++IK   L+P+     +++ AC
Sbjct: 352 GRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 1/158 (0%)

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
           P ++  SW   +   T    F+EA+  +  M   G +PD+F    VL + + +  L+ G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 346 WVHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
            +H    K  + ++   + N LV+MY KCG I     VF  +  RD  S+ + I  L   
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
            K  +AL+ F  M    +E    T V V  ACS+ G++
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVM 210


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 168/417 (40%), Positives = 256/417 (61%), Gaps = 2/417 (0%)

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
            ++I+ Y+ ++    ++  F  M + ++ PD      VL A ++L D  +G  IH  +  
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
             F    DV+   AL+ +Y  C +I  A ++FDEMP +N V+WN++I G TH  +F +A+
Sbjct: 118 MGF--ICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAI 175

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           D FR M   G +P + T+V VL++C+++G    GKW+H ++  N +  + F+G AL+DMY
Sbjct: 176 DAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMY 235

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           AKCG + +   VF  ++ ++VY++  +I G A++G+   AL  FS M     +PDEVTF+
Sbjct: 236 AKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFL 295

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
           GVL AC H GLV EG   F+ M + + LQP+ EHYGCMVDL GRAGL+ EAL+LI+SM +
Sbjct: 296 GVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI 355

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            PD  +W ALL AC++H   +L E +++ L+  EP     Y+L++NIYS + RW E  KL
Sbjct: 356 EPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKL 415

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R  M  R ++K PGCS +E+    YEF   +   P+   IYK LD ++ + K +GY+
Sbjct: 416 RGMMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYV 472



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 150/351 (42%), Gaps = 28/351 (7%)

Query: 16  INTFQQLSLLHQSPRLESS-------KSVGQL------KQFHAFIIKTG---SPQHQTQI 59
           +N+    +L+H+   L  S       K+  QL      K  H  +I+ G        T +
Sbjct: 71  LNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTAL 130

Query: 60  --LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNT 117
             LY   +S+S  +++ +   +   V     I     N   ++AI  +R ML  G  P+ 
Sbjct: 131 VHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSE 190

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
            T+  VL AC    +   G+ +H +     L  NV+V   L+ +YA CG +  V K+F  
Sbjct: 191 RTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVF-- 248

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
                 ++++ +W  LI  Y        A+ +F  M   N +PD +  + VL AC   G 
Sbjct: 249 --EEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGL 306

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSM 296
           ++ G +         F L P +  +  ++D+  + G +  A ++   M ++ + + W ++
Sbjct: 307 VTEG-RWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRAL 365

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS--CANIGWLELGK 345
           +      G  K    I +R+  + L+P++     +L++       W E+GK
Sbjct: 366 LCACRVHGNTKLGEYIIKRL--IELEPNNGENYVLLSNIYSRERRWAEVGK 414



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 118/270 (43%), Gaps = 15/270 (5%)

Query: 265 LIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           LID  +      S  ++F +     N    NSMI       +   +L IF  M    + P
Sbjct: 28  LIDDSVSRNGFESIARIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILP 87

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  T   VL + A +    +GK +H  + +     D +   ALV +Y  C  I  A  +F
Sbjct: 88  DSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLF 147

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             M  R+  ++ A+I G   + K  KA+D F  M   G +P E T V VLSACSH G   
Sbjct: 148 DEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFN 207

Query: 444 EG--CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           +G     F+  +R   L+        ++D++ + G + E   + + +    + + W  L+
Sbjct: 208 QGKWIHEFIYHNR---LRLNVFVGTALIDMYAKCGAVYEVEKVFEEIR-EKNVYTWNVLI 263

Query: 502 GACKIHAKVELA-----EIVMENLVRFEPE 526
               ++ + + A      ++MEN   F+P+
Sbjct: 264 SGYAMNGQGDAALQAFSRMLMEN---FKPD 290


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 191/519 (36%), Positives = 289/519 (55%), Gaps = 10/519 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV--GQQVHAYSMKTALLSNV 152
           N    EA+  +R M   G  P+  T   +L A  Q  +  +  G+++H Y+  + LL NV
Sbjct: 7   NGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNV 66

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V   ++ +Y  CG +      F   Q     ++ V+W  ++  Y       EA+  F +
Sbjct: 67  VVGTAVISMYGKCGRLDDARAAFEELQ----WKNSVTWNAMMTNYKLDGRDREALELFRE 122

Query: 213 MCQAN--LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
           MC+ +   RPD     I + ACS L DL  G +IH  +      L  DV +  AL++MY 
Sbjct: 123 MCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYS 182

Query: 271 KCGNIPSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTL 328
           KCG++  ARKVFD +    + V WN+MIA     G+ K+ALD++R M     L P   T 
Sbjct: 183 KCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTF 242

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
           V V++ CA +  L+ G+ +H  +   + + +  + NALV MY KCG +D+A  VF SMK 
Sbjct: 243 VTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKL 302

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           +D  S+  +I   A HG + +AL ++ EM   G++P EVTFVG+LSACSH GLV +G  +
Sbjct: 303 KDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDY 362

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M   + ++P   H+GC++DL GR G + EA  ++KSMP+  +A  W +LLGACK H 
Sbjct: 363 FYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHG 422

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
            ++      + +V   P   G Y+L++NIY++  RWK+  K+RK M  R VKK+PG S +
Sbjct: 423 DLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWI 482

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           E+    +EF  GD+SHP+  EIY  L +++ + K  GY+
Sbjct: 483 EIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYV 521



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 106/218 (48%), Gaps = 5/218 (2%)

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL--NSCANIGWLELGKWVHTYLDKN 354
           +A  +H G   EAL  FRRM   G +PD  T   +L   +      ++ G+ +H Y   +
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            +  +  +G A++ MY KCGR+D A   F  ++ ++  ++ AM+    + G+  +AL++F
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 415 SEMSQ--VGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDL 471
            EM +      PD+ +F   + ACS+   +E+G + H +       L         ++++
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           + + G + EA  +  S+    D+  W A++ A   H +
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGR 218


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 188/509 (36%), Positives = 301/509 (59%), Gaps = 8/509 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+  Y EM   G  P+   +  ++ A  +S +   G Q+HAY+MK  L S++ V N+L+
Sbjct: 402 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLV 461

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA    +K +  +F         +D+VSWTT+I  + +    + A+  F ++    + 
Sbjct: 462 DMYAKFCSMKYMDCIFD----KMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGID 517

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            D M++  +L ACS L  +S   +IH YI     +   D+ + N ++D+Y +CGN+  A 
Sbjct: 518 LDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS---DLVLQNGIVDVYGECGNVDYAA 574

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++F+ +  K+VVSW SMI+   H G   EAL++F  M+  G++PD  +LV +L++ A++ 
Sbjct: 575 RMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLS 634

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ GK +H +L +     +G + + LVDMYA+CG ++++  VF  ++ +D+  +T+MI 
Sbjct: 635 ALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMIN 694

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
              +HG    A+D+F  M    I PD + FV VL ACSH+GL+ EG +    M   Y L+
Sbjct: 695 AYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLE 754

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  EHY C+VDL GRA  + EA   +K M + P A VW ALLGAC+IH+  EL EI  + 
Sbjct: 755 PWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQK 814

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L+  +PE  G Y+L++N+Y+++ RWK+  ++R +MK   +KK PGCS +EV  + + F  
Sbjct: 815 LLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMA 874

Query: 580 GDKSHPKTLEIYKLLDEIMHQ-SKNHGYI 607
            DKSHP++ EIY  L +I  + +K  GY+
Sbjct: 875 RDKSHPQSYEIYSKLSQITEKLAKEGGYV 903



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 247/484 (51%), Gaps = 21/484 (4%)

Query: 33  SSKSVGQLKQFHAFIIKTGSP------QHQTQILYDKIISLSRGNEIENLSLQNPQVYLY 86
           S K++ + +Q HA +I + +         +   +Y K   L    ++ +  + +  ++ +
Sbjct: 126 SKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFD-GMPHKTIFTW 184

Query: 87  NFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           N +I   ++N  PL ++ LYREM + G+  +  T P +LKAC   +  R G +VH  ++K
Sbjct: 185 NAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIK 244

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
              +S V+V N+++ +Y  C  +    +LF   + P+ + D+VSW ++I AY       E
Sbjct: 245 EGYVSIVFVANSIVGMYTKCNDLNGARQLFD--RMPE-KEDVVSWNSMISAYSSNGQSIE 301

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           A+  F +M +A+L P+    V  L AC     +  G+ IH  +  + + +  +VF+ NAL
Sbjct: 302 ALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI--NVFVANAL 359

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           I MY + G +  A  +F  M   + +SWNSM++G    G + EAL  +  M+  G KPD 
Sbjct: 360 IAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDL 419

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
             ++ ++ + A  G    G  +H Y  KN +++D  +GN+LVDMYAK   +     +F  
Sbjct: 420 VAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDK 479

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE-- 443
           M  +DV S+T +I G A +G   +AL++F E+   GI+ D +    +L ACS   L+   
Sbjct: 480 MPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSV 539

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           +    ++    + +L  Q      +VD++G  G +  A  + + +    D   W +++ +
Sbjct: 540 KEIHSYIIRKGLSDLVLQNG----IVDVYGECGNVDYAARMFELIEF-KDVVSWTSMI-S 593

Query: 504 CKIH 507
           C +H
Sbjct: 594 CYVH 597



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 201/384 (52%), Gaps = 36/384 (9%)

Query: 79  QNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLL---------------PNTYTL--- 120
           QNP + +  F ++      P+E  +L RE+  +G +               P+ ++L   
Sbjct: 64  QNPPLKISKFPLK------PVETPSL-REICKRGSVNEAFQSLTDLFANQSPSQFSLDEA 116

Query: 121 -PYVLKACWQSQSLRVGQQVHAYSMKT-ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
              VL+ C   ++L  GQQVHA+ + + AL ++V++   L+ +Y  CG +    KLF   
Sbjct: 117 YSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGM 176

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
            H    + + +W  +I AYV    P  ++  + +M  + +  D      +L AC  L D 
Sbjct: 177 PH----KTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDR 232

Query: 239 SLGIKIHRY-ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSM 296
             G ++H   I + + ++   VF+ N+++ MY KC ++  AR++FD MP K +VVSWNSM
Sbjct: 233 RCGAEVHGLAIKEGYVSI---VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSM 289

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           I+  +  GQ  EAL +F  MQ   L P+ +T V  L +C +  +++ G ++H  + K+  
Sbjct: 290 ISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSY 349

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
             + F+ NAL+ MYA+ G++ +A  +F +M   D  S+ +M+ G   +G   +AL  + E
Sbjct: 350 YINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHE 409

Query: 417 MSQVGIEPDEVTFVGVLSACSHAG 440
           M   G +PD V  + +++A + +G
Sbjct: 410 MRDAGQKPDLVAVISIIAASARSG 433


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 317/572 (55%), Gaps = 12/572 (2%)

Query: 41  KQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           KQ HA++++ G+    + +      Y K   +  G ++ +  +    +     I   + N
Sbjct: 158 KQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQN 217

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           +   EA+ L+ EM   G  P+ +    VL +C   ++L  G+QVHAY++K  L SN +V 
Sbjct: 218 SFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVK 277

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ +YA   L+    K+F       A+++++S+  +I+ Y   +  +EA+  F +M  
Sbjct: 278 NGLIDMYAKSNLLXDAKKVFDV----MAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 333

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
               P  +  V +L   + L  L L  +IH  I      +S D+F  +ALID+Y KC  +
Sbjct: 334 RLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKX--GVSLDLFAGSALIDVYSKCSYV 391

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             AR VF+EM  K++V WN+M  G T   + +EAL ++  +Q    KP++FT   ++ + 
Sbjct: 392 KDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAA 451

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           +N+  L  G+  H  L K  ++   F+ NALVDMYAKCG I++A  +F S   RDV  + 
Sbjct: 452 SNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWN 511

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +MI   A HG+A +AL +F EM + GI+P+ VTFV VLSACSHAG VE+G  HF  M   
Sbjct: 512 SMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPG- 570

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           + ++P TEHY C+V L GR+G + EA + I+ MP+ P A VW +LL AC+I   VEL + 
Sbjct: 571 FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKY 630

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
             E  +  +P+  G+YIL++NI++SK  W +  K+R +M   +V K PG S +EV  +  
Sbjct: 631 AAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVN 690

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F     +H +   I  +LD ++   K  GY+
Sbjct: 691 VFIARXTTHREADMIGSVLDILIQHIKGAGYV 722



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/478 (28%), Positives = 236/478 (49%), Gaps = 15/478 (3%)

Query: 42  QFHAFIIKTGSPQH---QTQIL--YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H F++++G  Q     T ++  Y K   +     + +  L+   V     I       
Sbjct: 58  QLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCG 117

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
               ++ L+ +M    ++P+ Y +  VL AC   + L  G+Q+HAY ++     +V V N
Sbjct: 118 RSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVN 177

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+  Y  C  +KA  KLF         ++++SWTT+I  Y++  +  EA+  F +M + 
Sbjct: 178 VLIDFYTKCNRVKAGRKLF----DQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRL 233

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
             +PDG     VL++C  L  L  G ++H Y      NL  + F+ N LIDMY K   + 
Sbjct: 234 GWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKA--NLESNEFVKNGLIDMYAKSNLLX 291

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A+KVFD M  +NV+S+N+MI G + + +  EAL++F  M+     P   T V +L   A
Sbjct: 292 DAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSA 351

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           ++  LEL K +H  + K  ++ D F G+AL+D+Y+KC  +  A  VF  M  +D+  + A
Sbjct: 352 SLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNA 411

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV- 455
           M  G   H +  +AL ++S +     +P+E TF  +++A S+   +  G +    + ++ 
Sbjct: 412 MFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMG 471

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
            +  P   +   +VD++ + G I EA  +  S  +  D   W +++     H + E A
Sbjct: 472 LDFCPFVTN--ALVDMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEEA 526



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 132/415 (31%), Positives = 209/415 (50%), Gaps = 9/415 (2%)

Query: 100 EAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           EA+ ++ ++  K G  PN + L  V++AC Q   +  G Q+H + +++    +VYV  +L
Sbjct: 19  EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSL 78

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           +  Y+  G I+    +F        ++  V+WTT+I  Y K      ++  F  M + N+
Sbjct: 79  IDFYSKNGBIEVARLVF----DQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNV 134

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            PD  ++  VLSACS L  L  G +IH Y+      +  DV + N LID Y KC  + + 
Sbjct: 135 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM--DVSVVNVLIDFYTKCNRVKAG 192

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           RK+FD+M VKN++SW +MI+G        EA+ +F  M  LG KPD F    VL SC ++
Sbjct: 193 RKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSL 252

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             LE G+ VH Y  K ++ ++ F+ N L+DMYAK   +  A  VF  M  ++V SY AMI
Sbjct: 253 EALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMI 312

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G +   K  +AL++F EM      P  +TFV +L   S +    E  K    +     +
Sbjct: 313 EGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL-GVSASLFALELSKQIHGLIIKXGV 371

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
                    ++D++ +   +++A  + + M    D  VW A+      H + E A
Sbjct: 372 SLDLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMFFGYTQHLENEEA 425



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 197/380 (51%), Gaps = 16/380 (4%)

Query: 202 YPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           Y  EA++ F D+  ++   P+  +L  V+ AC++LG +  G ++H ++  + F+   DV+
Sbjct: 16  YSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFD--QDVY 73

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           +  +LID Y K GBI  AR VFD++  K  V+W ++IAG T  G+   +L++F +M+   
Sbjct: 74  VGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETN 133

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           + PD + +  VL++C+ + +LE GK +H Y+ +     D  + N L+D Y KC R+    
Sbjct: 134 VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGR 193

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            +F  M  +++ S+T MI G   +   W+A+ +F EM+++G +PD      VL++C    
Sbjct: 194 KLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLE 253

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
            +E+G +     +   NL+        ++D++ ++ L+ +A  +   M    +   + A+
Sbjct: 254 ALEQG-RQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMA-EQNVISYNAM 311

Query: 501 LGACKIHAKV-ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           +       K+ E  E+  E  VR  P     ++ +  + +S      AL+L K++    +
Sbjct: 312 IEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLF----ALELSKQIHGLII 367

Query: 560 KKT------PGCSLVEVYGE 573
           K         G +L++VY +
Sbjct: 368 KXGVSLDLFAGSALIDVYSK 387


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 198/571 (34%), Positives = 319/571 (55%), Gaps = 11/571 (1%)

Query: 42  QFHAFIIKTG---SPQHQTQI--LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H  +I +G    PQ    +  +Y K  +L    ++ N   Q   V     I   + N 
Sbjct: 234 QLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNG 293

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
              EA  L+  M+  G+ P++ T    L +  +S SLR  ++VH+Y ++  +  +VY+ +
Sbjct: 294 FTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKS 353

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+ +Y   G ++   K+F          D+   T +I  YV      +AI +F  + Q 
Sbjct: 354 ALIDVYFKGGDVEMARKIFQ----QNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQE 409

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            +  + + +  VL AC+ +  L  G ++H +I      L   V + +A+ DMY KCG + 
Sbjct: 410 GMVTNSLTMASVLPACAAVAALKPGKELHCHILKKR--LENIVNVGSAITDMYAKCGRLD 467

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A + F  M  ++ V WNSMI+  +  G+ + A+D+FR+M   G K D  +L   L++ A
Sbjct: 468 LAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAA 527

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           N+  L  GK +H Y+ +N  ++D F+ + L+DMY+KCG +  A+ VF  M  ++  S+ +
Sbjct: 528 NLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNS 587

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I     HG   + LD++ EM + GI PD VTF+ ++SAC HAGLV+EG  +F  M+R Y
Sbjct: 588 IIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREY 647

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            +  + EHY CMVDL+GRAG + EA D IKSMP  PDA VWG LLGAC++H  VELA++ 
Sbjct: 648 GIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLA 707

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
             +L+  +P+  G Y+L++N+++    W   LK+R  MKE+ V+K PG S ++V G  + 
Sbjct: 708 SRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVNGGTHM 767

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           F   D +HP+++EIY +L  ++ + +  GY+
Sbjct: 768 FSAADGNHPESVEIYLILKSLLLELRKQGYV 798



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/488 (28%), Positives = 234/488 (47%), Gaps = 25/488 (5%)

Query: 37  VGQLKQFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYL--YNFI 89
           V Q +Q H  +I  G     +P  +   LY   +   R  +  NL  +    Y   +N++
Sbjct: 27  VQQARQVHTQVIVGGMGDVCAPSSRVLGLY---VLCGRFRDAGNLFFELELRYALPWNWM 83

Query: 90  IQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I+ L      + A+  Y +ML   + P+ YT PYV+KAC    ++ +   VH  +     
Sbjct: 84  IRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGF 143

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             +++  + L++LYA  G I+   ++F   + P   RD + W  +++ YVK      AI 
Sbjct: 144 HVDLFAGSALIKLYADNGYIRDARRVFD--ELP--LRDTILWNVMLRGYVKSGDFDNAIG 199

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
           +F +M  +    + +    +LS C+  G+   G ++H  +  + F   P V   N L+ M
Sbjct: 200 TFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQV--ANTLVAM 257

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KCGN+  ARK+F+ MP  + V+WN +IAG    G   EA  +F  M   G+KPD  T 
Sbjct: 258 YSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTF 317

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
              L S    G L   K VH+Y+ ++ +  D ++ +AL+D+Y K G ++ A  +F+    
Sbjct: 318 ASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNIL 377

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK- 447
            DV   TAMI G  +HG    A++ F  + Q G+  + +T   VL AC+    ++ G + 
Sbjct: 378 VDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKEL 437

Query: 448 --HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505
             H L   R+ N+         + D++ + G +  A +  + M    D+  W +++ +  
Sbjct: 438 HCHILK-KRLENIVNVGS---AITDMYAKCGRLDLAYEFFRRMS-DRDSVCWNSMISSFS 492

Query: 506 IHAKVELA 513
            + K E+A
Sbjct: 493 QNGKPEIA 500



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 11/409 (2%)

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
           T  L  + +AC  +  ++  +QVH   +   +       + ++ LY +CG  +    LF 
Sbjct: 11  TTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFF 70

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
             +     R  + W  +I+    + +   A+L +F M  +N+ PD      V+ AC  L 
Sbjct: 71  ELE----LRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLN 126

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           ++ L + +H   T        D+F  +ALI +Y   G I  AR+VFDE+P+++ + WN M
Sbjct: 127 NVPLCMVVHD--TARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVM 184

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           + G    G F  A+  F  M+      +  T  C+L+ CA  G    G  +H  +  +  
Sbjct: 185 LRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGF 244

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
             D  + N LV MY+KCG +  A  +F +M   D  ++  +I G   +G   +A  +F+ 
Sbjct: 245 EFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNA 304

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M   G++PD VTF   L +   +G +   CK        + +         ++D++ + G
Sbjct: 305 MISAGVKPDSVTFASFLPSILESGSLRH-CKEVHSYIVRHRVPFDVYLKSALIDVYFKGG 363

Query: 477 LIREALDLIKSMPLVP----DAFVWGALLGACKIHAKVELAEIVMENLV 521
            +  A  + +   LV      A + G +L    I A      ++ E +V
Sbjct: 364 DVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMV 412


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 186/488 (38%), Positives = 291/488 (59%), Gaps = 11/488 (2%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT--LMRLYAVCGLIKAVHKLFHFRQH 180
           +++ C  SQS    +Q+HA+S++  +      FN   +  L ++   +    ++F+  Q 
Sbjct: 40  LVQLCGSSQSKL--KQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQA 97

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLS 239
           P    ++ +W T+I+ + + + P+ A+  F  M  A+ + PD      +  A +KL D+S
Sbjct: 98  P----NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVS 153

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           LG  IH  +  N F+     F+ N+L+ MY   G   SA +VF+ M  ++ V+WNS+I G
Sbjct: 154 LGEGIHSVVVRNGFD--SLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVING 211

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G   EAL ++R M   G++PD FT+V +L++C  +G L LG+ VH Y+ K  +  +
Sbjct: 212 FALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQN 271

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
               NAL+D+Y+KCG    A  VF  M+ R V S+T++IVGLA++G   +AL +F E+ +
Sbjct: 272 QHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELER 331

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G++P E+TFVGVL ACSH G+++EG  +F  M   Y + P+ EH+GCMVDL  RAG + 
Sbjct: 332 QGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVG 391

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           +A D I++MP+ P+A +W  LLGAC IH  +EL E+    + R E    G ++L++N+Y+
Sbjct: 392 DAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYA 451

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
           S+ RW +   +RK M  + VKKTPG SLVE+    YEF  GD+SHP++ E Y +L +I  
Sbjct: 452 SERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQ 511

Query: 600 QSKNHGYI 607
             K  GY+
Sbjct: 512 LLKIEGYV 519



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 147/524 (28%), Positives = 242/524 (46%), Gaps = 83/524 (15%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQI---LYDKIISLSR----GNEIENLSLQNPQVYLYNF 88
           S  +LKQ HAF I+ G P         L   ++SLS       +I N  +Q P ++ +N 
Sbjct: 47  SQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFN-QIQAPNIFTWNT 105

Query: 89  IIQCLSNA-NPLEAIALYREM-LIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           +I+  + + NP  A+ L+ +M     +LP+T+T P++ KA  +   + +G+ +H+  ++ 
Sbjct: 106 MIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRN 165

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
              S  +V N+L+ +Y+V G  ++ +++F    +    RD V+W ++I  +     P EA
Sbjct: 166 GFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSY----RDRVAWNSVINGFALNGMPNEA 221

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  + +M    + PDG  +V +LSAC +LG L+LG ++H Y+      L  +    NAL+
Sbjct: 222 LTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVK--VGLVQNQHASNALL 279

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           D+Y KCGN   A+KVFDEM  ++VVSW S+I GL   G   EAL +F  ++  GLKP + 
Sbjct: 280 DLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEI 339

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T V VL +C++                                   CG +D+ F  FR M
Sbjct: 340 TFVGVLYACSH-----------------------------------CGMLDEGFNYFRRM 364

Query: 387 K-----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           K        +  +  M+  L   GK   A D    M    + P+ V +  +L AC+  G 
Sbjct: 365 KEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMP---VPPNAVIWRTLLGACTIHGH 421

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD--------LIKSMPLVPD 493
           +E G     +++R    + +  H G  V L       R  LD        L+K +   P 
Sbjct: 422 LELG-----EVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTP- 475

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
                   G   +  K  + E +M +  R  P+ +  Y ++  I
Sbjct: 476 --------GYSLVELKNRVYEFIMGD--RSHPQSEETYAMLAKI 509


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 193/516 (37%), Positives = 296/516 (57%), Gaps = 7/516 (1%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N N  +A+ +  EM ++G+  N  T+  +L  C Q   +     +H Y +K  L  ++
Sbjct: 292 IQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDL 351

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           +V N L+ +YA  G ++   K F          D+VSW ++I AY + D P  A   F  
Sbjct: 352 FVSNALINMYAKFGNLEDARKAFQ----QMFITDVVSWNSIIAAYEQNDDPVTAHGFFVK 407

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M     +PD + LV + S  ++  D      +H +I    + L  DV I NA++DMY K 
Sbjct: 408 MQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGW-LMEDVVIGNAVVDMYAKL 466

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCV 331
           G + SA KVF+ +PVK+V+SWN++I G    G   EA+++++ M+    + P+  T V +
Sbjct: 467 GLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSI 526

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L + A++G L+ G  +H  + K +++ D F+   L+D+Y KCGR+  A  +F  +     
Sbjct: 527 LPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS 586

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            ++ A+I    IHG A K L +F EM   G++PD VTFV +LSACSH+G VEEG K    
Sbjct: 587 VTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEG-KWCFR 645

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           + + Y ++P  +HYGCMVDL GRAG +  A D IK MPL PDA +WGALLGAC+IH  +E
Sbjct: 646 LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIE 705

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           L +   + L   + +  G Y+L++NIY++  +W+   K+R   +ER +KKTPG S +EV 
Sbjct: 706 LGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVN 765

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +   F  G++SHPK  EIY+ L  +  + K+ GYI
Sbjct: 766 RKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYI 801



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 150/492 (30%), Positives = 250/492 (50%), Gaps = 25/492 (5%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQH---QTQI--LYDKI--ISLSRGNEIENLSLQNPQV 83
            +SS      K  HA ++  G  Q     T++  LY  +  +SLSR    +   +    V
Sbjct: 126 FDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQ---IPQKDV 182

Query: 84  YLYNFIIQC-LSNANPLEAIA-LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           Y +N +I   + N +  EAI   Y+ +L+  + P+ YT P VLKAC    +L  G+++H 
Sbjct: 183 YAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHC 239

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           ++ K     NV+V  +L+ +Y+  G       LF         RD+ SW  +I   ++  
Sbjct: 240 WAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF----DDMPFRDMGSWNAMISGLIQNG 295

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
              +A+    +M    ++ + + +V +L  C +LGD+S  + IH Y+  +   L  D+F+
Sbjct: 296 NAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKH--GLEFDLFV 353

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            NALI+MY K GN+  ARK F +M + +VVSWNS+IA          A   F +MQ  G 
Sbjct: 354 SNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGF 413

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTY-LDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           +PD  TLV + +  A     +  + VH + + +  +  D  IGNA+VDMYAK G +D A 
Sbjct: 414 QPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAH 473

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHA 439
            VF  +  +DV S+  +I G A +G A +A++++  M +   I P++ T+V +L A +H 
Sbjct: 474 KVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHV 533

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           G +++G K    + +  NL        C++D++G+ G + +A+ L   +P    +  W A
Sbjct: 534 GALQQGMKIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQ-ESSVTWNA 591

Query: 500 LLGACKIHAKVE 511
           ++    IH   E
Sbjct: 592 IISCHGIHGHAE 603



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 213/446 (47%), Gaps = 27/446 (6%)

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +HA  +    + ++++   L+ LYA  G +      F   Q PQ  +D+ +W ++I AYV
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFD--QIPQ--KDVYAWNSMISAYV 193

Query: 199 KMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
              +  EAI  F+ +   + +RPD      VL AC  L D   G KIH +     F    
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQW-- 248

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           +VF+  +LI MY + G    AR +FD+MP +++ SWN+MI+GL   G   +ALD+   M+
Sbjct: 249 NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 308

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             G+K +  T+V +L  C  +G +     +H Y+ K+ +  D F+ NAL++MYAK G ++
Sbjct: 309 LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLE 368

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F+ M   DV S+ ++I     +     A   F +M   G +PD +T V + S  +
Sbjct: 369 DARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVA 428

Query: 438 HAGLVEEGCK-----HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
            +      CK     H   M R + L         +VD++ + GL+  A  + + +P V 
Sbjct: 429 QS----RDCKNSRSVHGFIMRRGW-LMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIP-VK 482

Query: 493 DAFVWGALL-GACKIHAKVELAEI--VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549
           D   W  L+ G  +     E  E+  +ME      P   G ++ +   Y+     ++ +K
Sbjct: 483 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPN-QGTWVSILPAYAHVGALQQGMK 541

Query: 550 LRKKMKERKVKKT--PGCSLVEVYGE 573
           +  ++ +  +         L++VYG+
Sbjct: 542 IHGRVIKTNLHLDVFVATCLIDVYGK 567


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/608 (32%), Positives = 326/608 (53%), Gaps = 67/608 (11%)

Query: 60   LYDKIISLSRGNEIENLSLQNPQVYLYN-FIIQCLSNANPLEAIALYREMLIKGLLPNTY 118
             Y +   L + N++ +  + NP+  L+N  II  L +    + + L+R+M    L   T 
Sbjct: 718  FYGRCWGLEKANQVFH-EMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETA 776

Query: 119  TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
            T+  VL+AC +  +L   +Q+H Y  +  L S+V + N L+ +Y+  G ++   ++F   
Sbjct: 777  TIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 836

Query: 179  QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI-------------- 224
            ++    R+  SW ++I +Y  + +  +A   F+++  ++++PD +               
Sbjct: 837  EN----RNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYK 892

Query: 225  ---------------------LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
                                 +  VL A S+LG L++G + H Y+  N F+   DV++  
Sbjct: 893  EEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDC--DVYVGT 950

Query: 264  ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
            +LIDMY+K  ++ SA+ VFD M  +N+ +WNS+++G + +G F++AL +  +M+  G+KP
Sbjct: 951  SLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKP 1010

Query: 324  DDFT------------------------LVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
            D  T                        + C+L +CA++  L+ GK +H    +N    D
Sbjct: 1011 DLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIED 1070

Query: 360  GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             F+  AL+DMY+K   +  A  VFR ++ + + S+  MI+G AI G   +A+ +F+EM +
Sbjct: 1071 VFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQK 1130

Query: 420  VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            VG+ PD +TF  +LSAC ++GL+ EG K+F  M   Y + P+ EHY CMVDL GRAG + 
Sbjct: 1131 VGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLD 1190

Query: 480  EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
            EA DLI +MPL PDA +WGALLG+C+IH  +  AE   +NL + EP     YILM N+YS
Sbjct: 1191 EAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYS 1250

Query: 540  SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
              NRW++   LR+ M    V+     S +++    + F   +K HP   +IY  L +++ 
Sbjct: 1251 IFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVS 1310

Query: 600  QSKNHGYI 607
            + K  GY+
Sbjct: 1311 EMKKLGYV 1318



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 141/520 (27%), Positives = 240/520 (46%), Gaps = 101/520 (19%)

Query: 81   PQVYLY--NFIIQCLSNANPLEAI-ALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
            P+ YL   +F+ +  S+A  L  +  +++E+  KG++ ++      LK C +   + +G 
Sbjct: 635  PRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGM 694

Query: 138  QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            ++H   +K     +VY+   LM  Y  C  ++  +++FH   +P+A    + W   I   
Sbjct: 695  EIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEA----LLWNEAIILN 750

Query: 198  VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            ++ +   + +  F  M  + L+ +   +V VL AC K+G L+   +IH Y+    F L  
Sbjct: 751  LQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVF--RFGLDS 808

Query: 258  DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI-------------------- 297
            DV + N LI MY K G +  AR+VFD M  +N  SWNSMI                    
Sbjct: 809  DVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELE 868

Query: 298  ---------------AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
                           +G    G  +E L+I +RMQG G KP+  ++  VL + + +G+L 
Sbjct: 869  SSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLN 928

Query: 343  LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
            +GK  H Y+ +N  + D ++G +L+DMY K   +  A  VF +MK R+++++ +++ G +
Sbjct: 929  MGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYS 988

Query: 403  IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS------------------------ACSH 438
              G    AL + ++M + GI+PD VT+ G++S                        AC+ 
Sbjct: 989  FKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACAS 1048

Query: 439  AGLVEEG------------------CKHFLDM----SRVYN-------LQPQT-EHYGCM 468
              L+++G                      +DM    S + N       +Q +T   + CM
Sbjct: 1049 LSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCM 1108

Query: 469  VDLFGRAGLIREALDLIKSMPLV---PDAFVWGALLGACK 505
            +  F   GL +EA+ +   M  V   PDA  + ALL ACK
Sbjct: 1109 IMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACK 1148



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 184/380 (48%), Gaps = 10/380 (2%)

Query: 185  RDLVSWTTLIQAYVKMDYPTEAILSFF-DMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
            R+ + W + ++ +         +L  F ++    +  D  +  + L  C+++ D+ LG++
Sbjct: 636  RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 695

Query: 244  IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303
            IH  +    F+L  DV++  AL++ Y +C  +  A +VF EMP    + WN  I      
Sbjct: 696  IHGCLIKRGFDL--DVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQS 753

Query: 304  GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
             + ++ +++FR+MQ   LK +  T+V VL +C  +G L   K +H Y+ +  +++D  + 
Sbjct: 754  EKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLC 813

Query: 364  NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423
            N L+ MY+K G+++ A  VF SM+ R+  S+ +MI   A  G    A  +F E+    ++
Sbjct: 814  NPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMK 873

Query: 424  PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI---RE 480
            PD VT+  +LS     G  EE   + L   +    +P +     ++      G +   +E
Sbjct: 874  PDIVTWNCLLSGHFLHGYKEE-VLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKE 932

Query: 481  ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540
                +       D +V  +L+     +  +  A+ V +N+   +     A+  + + YS 
Sbjct: 933  THGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNM---KNRNIFAWNSLVSGYSF 989

Query: 541  KNRWKEALKLRKKMKERKVK 560
            K  +++AL+L  +M++  +K
Sbjct: 990  KGMFEDALRLLNQMEKEGIK 1009


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 197/561 (35%), Positives = 318/561 (56%), Gaps = 22/561 (3%)

Query: 63  KIISLSRGNEIENLS------LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLP 115
           +++   R  E +NL+      +    V+ +N +I  L+ + +  EA+  +  M    L P
Sbjct: 15  RLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYP 74

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
              + P  +KAC     +  G+Q H  +      S+++V + L+ +Y+ CG ++   K+F
Sbjct: 75  TRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVF 134

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC------QANLRPDGMILVIVL 229
              + P+  R++VSWT++I+ Y       +A+  F D+        A +  D M +V V+
Sbjct: 135 D--EIPK--RNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVI 190

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN--IPSARKVFDEMPV 287
           SACS++    L   IH ++    F+    V + N L+D Y K G   +  ARK+FD++  
Sbjct: 191 SACSRVAAKGLTESIHSFVIKRGFDRG--VSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
           K+ VS+NS+++     G   EA D+FRR+ +   +  +  TL  VL + ++ G L +GK 
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKC 308

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           +H  + +  +  D  +G +++DMY KCGR++ A   F  MK ++V S+TAMI G  +HG 
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGH 368

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
           A KAL++F  M   G+ P+ +TFV VL+ACSHAGL + G   F  M   + ++P  EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYG 428

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CMVDL GRAG +++A DLI+ M + PD+ +W +LL AC+IH  VELAEI +  L   +P 
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPS 488

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
             G Y+L+++IY+   RWK+  ++R  MK R + K PG SL+E+ GE + F  GD+ HP+
Sbjct: 489 NCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQ 548

Query: 587 TLEIYKLLDEIMHQSKNHGYI 607
             +IY+ L E+  +    GY+
Sbjct: 549 REKIYEFLAELNRKLLEAGYV 569


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 188/521 (36%), Positives = 302/521 (57%), Gaps = 18/521 (3%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV-----HAYSMKTALL 149
           NA   EA+ L+  M+ +G+  +T T+  VL  C     + +G QV     H Y++K  L 
Sbjct: 147 NARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMC-----VLLGDQVLALVMHVYAVKHGLD 201

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
             ++V N L+ +Y   G+++    +FH  +     RDLV+W ++I    +      A+  
Sbjct: 202 KELFVCNALIDVYGKLGMLEEAQCVFHGME----CRDLVTWNSIISGCEQRGQTAAALKM 257

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F  M  + + PD + LV + SA ++ GD      +H Y+    +++  D+   NA++DMY
Sbjct: 258 FQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVD-DIIAGNAIVDMY 316

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG-LGLKPDDFTL 328
            K  NI +A+++FD MPV++ VSWN++I G    G   EA++ +  MQ   GLK    T 
Sbjct: 317 AKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTF 376

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
           V VL + +++G L+ G  +H    K  +N D ++G  L+D+YAKCG++ +A  +F  M  
Sbjct: 377 VSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPR 436

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           R    + A+I GL +HG   +AL +FS M Q GI+PD VTFV +L+ACSHAGLV++G   
Sbjct: 437 RSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSF 496

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M   Y++ P  +HY CM D+ GRAG + EA + I++MP+ PD+ VWGALLGAC+IH 
Sbjct: 497 FDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHG 556

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
            VE+ ++  +NL   +PE  G Y+LM+N+Y+   +W    ++R  ++ + ++KTPG S +
Sbjct: 557 NVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSI 616

Query: 569 EVYGEFYEFRKGDKS--HPKTLEIYKLLDEIMHQSKNHGYI 607
           EV      F  G+++  HP+  EI   L  ++ + ++ GY+
Sbjct: 617 EVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYV 657



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 218/429 (50%), Gaps = 19/429 (4%)

Query: 87  NFIIQCLSNAN-PLEAIALYREMLIKG--LLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           N +I   S A  P  A  L R +L       P+ +T P +++A   + S     Q+HA +
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNAS---AAQLHACA 93

Query: 144 MKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
           ++  L+  +V+   +L+  Y   G I   +K+F       ++RD+ +W  ++    +   
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFD----EMSERDVPAWNAMLSGLCRNAR 149

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             EA+  F  M    +  D + +  VL  C  LGD  L + +H Y   +   L  ++F+ 
Sbjct: 150 AAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKH--GLDKELFVC 207

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           NALID+Y K G +  A+ VF  M  +++V+WNS+I+G   RGQ   AL +F+ M+G G+ 
Sbjct: 208 NALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVS 267

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI-GNALVDMYAKCGRIDQAFG 381
           PD  TLV + ++ A  G     K +H Y+ +   + D  I GNA+VDMYAK   I+ A  
Sbjct: 268 PDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQR 327

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ-VGIEPDEVTFVGVLSACSHAG 440
           +F SM  +D  S+  +I G   +G A +A++ +  M +  G++  + TFV VL A SH G
Sbjct: 328 MFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLG 387

Query: 441 LVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
            +++G + H L +    N+        C++DL+ + G + EA+ L + MP       W A
Sbjct: 388 ALQQGMRMHALSIKIGLNVDVYVGT--CLIDLYAKCGKLAEAMLLFEKMPRRSTG-PWNA 444

Query: 500 LLGACKIHA 508
           ++    +H 
Sbjct: 445 IISGLGVHG 453


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/493 (36%), Positives = 284/493 (57%), Gaps = 10/493 (2%)

Query: 119 TLPYVLKACW-QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYA---VCGLIKAVHKL 174
           T P  L +C  +  SL+  +Q+ A+S+KT L +++ +   L+           +   H+L
Sbjct: 24  TYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQL 83

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F     P    D+V + ++ + Y + + P +AI  F      NL PD      +L AC  
Sbjct: 84  FEAIPQP----DIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVV 139

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
                 G ++H        N +P  ++   LI+MY  C ++  A++VFDE+    VVS+N
Sbjct: 140 AKAFQQGKQLHCLAIKLGLNENP--YVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYN 197

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           ++I G     +  EAL +FR++Q   LKP+D T++ VL+SCA +G L+LGKW+H Y+ KN
Sbjct: 198 AIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKN 257

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            ++    +  AL+DMYAKCG +D A  VF SM  RD  +++AMIV  A+HG+    + +F
Sbjct: 258 GLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMF 317

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            EM++  ++PDE+TF+G+L ACSH GLV+EG ++F  MS VY + P  +HYGCMVDL GR
Sbjct: 318 EEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGR 377

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           AGL+ EA   I  +P+ P   +W  LL +C  H  +ELA+ VM  ++  +    G Y+++
Sbjct: 378 AGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVIL 437

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           +N+ +   +W++   LRK M  +   K PGCS +EV    +EF  GD  H  +  +++ L
Sbjct: 438 SNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRAL 497

Query: 595 DEIMHQSKNHGYI 607
           DE++ + K+ GY+
Sbjct: 498 DELVKELKSVGYV 510



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 156/559 (27%), Positives = 269/559 (48%), Gaps = 74/559 (13%)

Query: 4   PLTVASGSRYNDI-NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYD 62
           P+   S S+++   NT    SLL   P+  S K   +LKQ  AF IKT   Q+  QIL  
Sbjct: 8   PVIQQSPSQHSSYYNTTYPSSLLSCLPKCTSLK---ELKQIQAFSIKT-HLQNDLQILTK 63

Query: 63  KIISLSRGNEIENL--------SLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGL 113
            I S ++     ++        ++  P + L+N + +  S +N PL+AI+L+ + L   L
Sbjct: 64  LINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNL 123

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
           LP+ YT P +LKAC  +++ + G+Q+H  ++K  L  N YV  TL+ +YA C  +    +
Sbjct: 124 LPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQR 183

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA-NLRPDGMILVIVLSAC 232
           +F     P     +VS+  +I  Y +   P EA LS F   QA  L+P+ + ++ VLS+C
Sbjct: 184 VFDEILEPC----VVSYNAIITGYARSSRPNEA-LSLFRQLQARKLKPNDVTVLSVLSSC 238

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           + LG L LG  IH Y+  N   L   V ++ ALIDMY KCG++  A  VF+ M V++  +
Sbjct: 239 ALLGALDLGKWIHEYVKKN--GLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQA 296

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYL 351
           W++MI      GQ ++ + +F  M    ++PD+ T + +L +C++ G ++ G ++ ++  
Sbjct: 297 WSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYS-- 354

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
                                   + + +G+   +K      Y  M+  L   G+A    
Sbjct: 355 ------------------------MSEVYGIIPGIK-----HYGCMVDLL---GRAGLLH 382

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL-QPQTEHYGCMVD 470
           + +  + ++ I+P  + +  +LS+CS  G +E   +    M+++  L       Y  + +
Sbjct: 383 EAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQV---MNQILELDDSHGGDYVILSN 439

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           L  RAG   +   L K M             GA KI      + I ++N+V     GDG 
Sbjct: 440 LCARAGKWEDVDTLRKLM----------IHKGAVKIPG---CSSIEVDNVVHEFFSGDGV 486

Query: 531 YILMTNIYSSKNRWKEALK 549
           + + T ++ + +   + LK
Sbjct: 487 HYVSTALHRALDELVKELK 505


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 202/616 (32%), Positives = 326/616 (52%), Gaps = 62/616 (10%)

Query: 31  LESSKSVGQLKQFHAFIIKTG----------------SPQHQTQILYDKIISLSRGNEIE 74
           L  SK++  + Q H+ +I TG                S  H+  + + + + +SR    +
Sbjct: 21  LPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRK 80

Query: 75  NLSLQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133
           +    NP  +L+N II+  S+  +P EA  ++  ML  G+  + ++   VLKAC +   +
Sbjct: 81  HRKQDNP--FLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLI 138

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH----------------- 176
           + G Q+H    +  + S+V++ N LM LY  CG +    +LF                  
Sbjct: 139 KEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGY 198

Query: 177 ------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI 224
                       F   P  Q++L+SW ++I  Y + +   E +   +++ +   + D + 
Sbjct: 199 VKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSE---EGLRVAWELFEEMPKRDLIS 255

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP--DVFIHNALIDMYLKCGNIPSARKVF 282
              ++  C K G +     +        FN  P  DV     ++D Y K G I  AR +F
Sbjct: 256 WNSMIDGCVKCGKMENAHHL--------FNQMPKRDVVSWANMVDGYAKLGEIDIARGLF 307

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWL 341
           DEMP ++V+S N+M+AG    G   EAL+ F  M     L PD+ TL+  L++ A +G  
Sbjct: 308 DEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHF 367

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
           + G  +H Y++ N  +    +G AL+DMYAKCG ID A  VF  +  + +  + A+I GL
Sbjct: 368 DEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGL 427

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
           AIHG    A ++F EM ++ ++PD++TF+GVL+AC+HAGLV+EG   F  M RV+ ++P+
Sbjct: 428 AIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPK 487

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
            +HYGCMVD+ GRAG + EA   ++ MP+ P+  VW  LL AC+ H    + E V ++L+
Sbjct: 488 LQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLI 547

Query: 522 RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581
             +     +Y+L++NIY+    W +  ++R  MK+R +KK PGCS +E+ G  +EF   D
Sbjct: 548 SVDSYNPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRD 607

Query: 582 KSHPKTLEIYKLLDEI 597
           KSHP+  EIY +LD +
Sbjct: 608 KSHPQVREIYSMLDSL 623


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 184/472 (38%), Positives = 280/472 (59%), Gaps = 41/472 (8%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR-DLVSWTTLIQ 195
           +QVHA  +KT    ++     L R+  VC    + H      +  + Q+ +   W + ++
Sbjct: 78  RQVHAQIIKTNAPLSIL---PLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLK 134

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           A  + D P +AI+ F+ + Q ++ PD      VL AC  L DLS G  +H  +    F  
Sbjct: 135 ALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFR- 193

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
                                               SW SMIAG    G+ KEA+ +F +
Sbjct: 194 ------------------------------------SWTSMIAGYVQCGKAKEAIHLFAK 217

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+  G+K ++ T+V VL +CA++G L+LG  +H Y +++    +  I N L+DMY KCG 
Sbjct: 218 MEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGC 277

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +++A  VF  M+ R V S++AMI GLA+HG+A +AL +FS+MSQVGIEP+ VTF+G+L A
Sbjct: 278 LEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHA 337

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           CSH GL+ EG + F  M+R Y + PQ EHYGCMVDL  RAGL+ EA + I +MP+ P+  
Sbjct: 338 CSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGV 397

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           VWGALLGAC++H  VE+AE  +++L+  +P  DG Y++++NIY+   RW++  ++RK MK
Sbjct: 398 VWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMK 457

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +R+VKKTPG S + V G  +EF  G++SHP T +I++  +E++ + +  GY+
Sbjct: 458 DRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYV 509



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 182/361 (50%), Gaps = 57/361 (15%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII-----SLSRGNEI-ENLSLQNPQVY 84
           L +  S  +L+Q HA IIKT +P     +    ++     S     +I + +  Q P+ +
Sbjct: 68  LRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETF 127

Query: 85  LYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           ++N  ++ L+  + P++AI L+  +    + P+T+T   VL+AC     L  G+ +H   
Sbjct: 128 VWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILH--- 184

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
                                 G+++ V     FR          SWT++I  YV+    
Sbjct: 185 ----------------------GVVEKV----GFR----------SWTSMIAGYVQCGKA 208

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EAI  F  M +A ++ + + +V VL+AC+ LG L LG++IH Y   N      +V I N
Sbjct: 209 KEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEY--SNRHGFKRNVRISN 266

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
            LIDMY+KCG +  A KVF+EM  + VVSW++MI GL   G+ +EAL +F  M  +G++P
Sbjct: 267 TLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEP 326

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN-----ALVDMYAKCGRIDQ 378
           +  T + +L++C+++G +  G+     + +++    G I        +VD+ ++ G + +
Sbjct: 327 NGVTFIGLLHACSHMGLISEGRRFFASMTRDY----GIIPQIEHYGCMVDLLSRAGLLHE 382

Query: 379 A 379
           A
Sbjct: 383 A 383



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 124/261 (47%), Gaps = 15/261 (5%)

Query: 90  IQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           +QC       EAI L+ +M   G+  N  T+  VL AC    +L +G ++H YS +    
Sbjct: 203 VQC---GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFK 259

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
            NV + NTL+ +Y  CG ++   K+F        +R +VSW+ +I          EA+  
Sbjct: 260 RNVRISNTLIDMYVKCGCLEEACKVF----EEMEERTVVSWSAMIGGLAMHGRAEEALRL 315

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F DM Q  + P+G+  + +L ACS +G +S G +    +T + + + P +  +  ++D+ 
Sbjct: 316 FSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD-YGIIPQIEHYGCMVDLL 374

Query: 270 LKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
            + G +  A +    MP+K N V W +++         + A +  + +  L    D + +
Sbjct: 375 SRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYV 434

Query: 329 VCVLNSCANIGWLELGKWVHT 349
           V      +NI + E G+W  T
Sbjct: 435 V-----LSNI-YAEAGRWEDT 449


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 214/646 (33%), Positives = 333/646 (51%), Gaps = 62/646 (9%)

Query: 11  SRYNDIN--TFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLS 68
           + YND      Q +S+L  S    SS   G  KQ H  II +G  +     L  K++   
Sbjct: 69  TSYNDSFDLILQSISILLVSCTKSSSLPPG--KQLHGHIISSGLVE--DSFLVSKLVMFY 124

Query: 69  RGNE--------IENLSLQNPQVYLYNFIIQCLSNANPLEAIAL-YREMLIKGLLPNTYT 119
              E        +E  +L  P  +  N +I         EA  L Y++M+ KG+ P+ +T
Sbjct: 125 SSLEFLPEAHTLVETSNLFRPCSW--NILITSYVKHKLYEAAILAYKQMVSKGVRPDNFT 182

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
            P +LKAC ++Q+L+ G +VH      +   +++V N L+ +Y  CG +     LF    
Sbjct: 183 FPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDTARNLFD--- 239

Query: 180 HPQAQRDLVSWTTLIQAY-----------------------------------VKMDYPT 204
               +RD VSW ++I  Y                                   +++   T
Sbjct: 240 -NMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFT 298

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY-ITDNHFNLSPDVFIHN 263
           +A+     M    +  D + ++I L ACS +G + LG +IH + I   H  LS    + N
Sbjct: 299 QALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLST---VQN 355

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL+ MY +C +I  A  +F     K+ ++WNSM++GLTH G+ +EAL +FR +   G++P
Sbjct: 356 ALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVEP 415

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI-GNALVDMYAKCGRIDQAFGV 382
           D  T   +L  CA +  L+ G+  H Y+ K+    D  +  NALVDMYA+ G++ +A  +
Sbjct: 416 DYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRI 475

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F S+  +D  +YT++I G  + G+  KA+ +F EM +  I+PD +T + VLSACSH+GLV
Sbjct: 476 FYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACSHSGLV 535

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
            +    F +M  V+ L P+ EHY CM DLFGR GL+ +A ++I  MP  P + +W  L+G
Sbjct: 536 NQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSAIWATLIG 595

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           AC IH  +++ E   E L+   PE  G Y+L+ N+Y++   W +  ++R  M++  V K 
Sbjct: 596 ACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAAGSWSKLAEIRTLMRDSGVAKI 655

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
           PGCS V+V  EF  F  GD S P+ LE   LLD  ++    HG ++
Sbjct: 656 PGCSWVDVGSEFISFSVGDTSSPQALESKLLLDS-LYDVMKHGSLI 700


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 177/488 (36%), Positives = 294/488 (60%), Gaps = 10/488 (2%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           +L + + +C    S+     +HA  +K+   S+ ++ + L+ +Y   G  +   +LF   
Sbjct: 124 SLVFAISSC---TSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD-- 178

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGD 237
                 +DLVSW +L+       Y    + +F  M  ++  +P+ + L+ V+SAC+ +G 
Sbjct: 179 --EMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGA 236

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L  G  +H  +      +S    + N+LI+MY K G + +A ++F+EMPV+++VSWNSM+
Sbjct: 237 LDEGKSLHGVVVK--LGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMV 294

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
               H G  ++ +D+F  M+  G+ PD  T+V +L +C + G     + +H Y+ +   N
Sbjct: 295 VIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN 354

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            D  I  AL+++YAK GR++ +  +F  +K RD  ++TAM+ G A+H    +A+ +F  M
Sbjct: 355 ADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLM 414

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
            + G+E D VTF  +LSACSH+GLVEEG K+F  MS VY ++P+ +HY CMVDL GR+G 
Sbjct: 415 VKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGR 474

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
           + +A +LIKSMP+ P + VWGALLGAC+++  VEL + V E L+  +P     YI+++NI
Sbjct: 475 LEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNI 534

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           YS+   W++A K+R  MKER++ + PGCS +E   + + F  GD+ HP++ EI+  L+E+
Sbjct: 535 YSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEEL 594

Query: 598 MHQSKNHG 605
           + + +  G
Sbjct: 595 IRKIREAG 602



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 173/367 (47%), Gaps = 21/367 (5%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS----LSRGNEIENL--SLQNPQVY 84
           + S  SV      HA +IK  S  +    + D+++S    L    + + L   + N  + 
Sbjct: 129 ISSCTSVSYCSAIHARVIK--SLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLV 186

Query: 85  LYNFIIQCLSNANPLEAI--ALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
            +N ++  LS    L A   A  R     G  PN  TL  V+ AC    +L  G+ +H  
Sbjct: 187 SWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGV 246

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +K  +     V N+L+ +Y   G + A  +LF         R LVSW +++  +    Y
Sbjct: 247 VVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF----EEMPVRSLVSWNSMVVIHNHNGY 302

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             + +  F  M +A + PD   +V +L AC+  G       IH YI    FN   D+ I 
Sbjct: 303 AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN--ADIIIA 360

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
            AL+++Y K G + ++  +F+E+  ++ ++W +M+AG       +EA+ +F  M   G++
Sbjct: 361 TALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVE 420

Query: 323 PDDFTLVCVLNSCANIGWLELGK---WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            D  T   +L++C++ G +E GK    + + + +     D +  + +VD+  + GR++ A
Sbjct: 421 VDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY--SCMVDLLGRSGRLEDA 478

Query: 380 FGVFRSM 386
           + + +SM
Sbjct: 479 YELIKSM 485


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/524 (34%), Positives = 307/524 (58%), Gaps = 9/524 (1%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ-SQSLRVGQQVHAYS 143
           +N +I  ++ N   +EA+ L+ ++L  GL P+ YT+  VLKA     + L + +QVH ++
Sbjct: 384 WNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHA 443

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K   +S+ +V   L+  Y+    +K    LF      +   DLV+W  ++  Y +    
Sbjct: 444 IKINNVSDSFVSTALIDAYSRNRCMKEAEILFE-----RHNFDLVAWNAMMAGYTQSHDG 498

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            + +  F  M +   R D   L  V   C  L  ++ G ++H Y   + ++L  D+++ +
Sbjct: 499 HKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDL--DLWVSS 556

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
            ++DMY+KCG++ +A+  FD +PV + V+W +MI+G    G+ + A  +F +M+ +G+ P
Sbjct: 557 GILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLP 616

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D+FT+  +  + + +  LE G+ +H    K +   D F+G +LVDMYAKCG ID A+ +F
Sbjct: 617 DEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLF 676

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
           + ++  ++ ++ AM+VGLA HG+  + L +F +M  +GI+PD+VTF+GVLSACSH+GLV 
Sbjct: 677 KRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVS 736

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           E  KH   M   Y ++P+ EHY C+ D  GRAGL+++A +LI+SM +   A ++  LL A
Sbjct: 737 EAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAA 796

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C++    E  + V   L+  EP    AY+L++N+Y++ ++W E    R  MK  KVKK P
Sbjct: 797 CRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDP 856

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           G S +EV  + + F   D+S+ +T  IY+ + +++   K  GY+
Sbjct: 857 GFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYV 900



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 199/409 (48%), Gaps = 16/409 (3%)

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           + +M+   +  +  T   +L    +  SL +GQQVH  ++K  L   + V N+L+ +Y  
Sbjct: 303 FADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMY-- 360

Query: 165 CGLIKAVHKLFHFRQ---HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221
           C L K     F F +      ++RDL+SW ++I    +     EA+  F  + +  L+PD
Sbjct: 361 CKLRK-----FGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPD 415

Query: 222 GMILVIVLSACSKLGD-LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
              +  VL A S L + LSL  ++H +      N   D F+  ALID Y +   +  A  
Sbjct: 416 QYTMTSVLKAASSLPEGLSLSKQVHVHAI--KINNVSDSFVSTALIDAYSRNRCMKEAEI 473

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           +F+     ++V+WN+M+AG T      + L +F  M   G + DDFTL  V  +C  +  
Sbjct: 474 LFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFA 532

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           +  GK VH Y  K+  + D ++ + ++DMY KCG +  A   F S+   D  ++T MI G
Sbjct: 533 INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISG 592

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
              +G+  +A  +FS+M  +G+ PDE T   +  A S    +E+G +   +  ++ N   
Sbjct: 593 CIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKL-NCTN 651

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
                  +VD++ + G I +A  L K + ++ +   W A+L     H +
Sbjct: 652 DPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGE 699



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 153/306 (50%), Gaps = 8/306 (2%)

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F DM ++++  D +  +++L+   K+  L+LG ++H        +L   + + N+LI+MY
Sbjct: 303 FADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLM--LTVSNSLINMY 360

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            K      AR VFD M  ++++SWNS+IAG+   G   EA+ +F ++   GLKPD +T+ 
Sbjct: 361 CKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMT 420

Query: 330 CVLNSCANI-GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
            VL + +++   L L K VH +  K +  +D F+  AL+D Y++   + +A  +F     
Sbjct: 421 SVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF 480

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK- 447
            D+ ++ AM+ G        K L +F+ M + G   D+ T   V   C     + +G + 
Sbjct: 481 -DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQV 539

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           H   +   Y+L         ++D++ + G +  A     S+P VPD   W  ++  C  +
Sbjct: 540 HAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIP-VPDDVAWTTMISGCIEN 596

Query: 508 AKVELA 513
            + E A
Sbjct: 597 GEEERA 602



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 7/198 (3%)

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           DL LG   H  I    F  +P+ F+ N LI MY KCG++  AR+VFD+MP +++VSWNS+
Sbjct: 54  DLMLGKCTHARILT--FEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSI 111

Query: 297 IAGLTHRGQ-----FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           +A      +      ++A  +FR ++   +     TL  +L  C + G++   +  H Y 
Sbjct: 112 LAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYA 171

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            K  ++ D F+  ALV++Y K G++ +   +F  M  RDV  +  M+      G   +A+
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 231

Query: 412 DIFSEMSQVGIEPDEVTF 429
           D+ S     G+ P+E+T 
Sbjct: 232 DLSSAFHSSGLNPNEITL 249



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 172/411 (41%), Gaps = 48/411 (11%)

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           N  +A  L+R +    +  +  TL  +LK C  S  +   +  H Y+ K  L  + +V  
Sbjct: 125 NIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAG 184

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+ +Y   G +K    LF         RD+V W  +++AY++M +  EAI        +
Sbjct: 185 ALVNIYLKFGKVKEGKVLFE----EMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSS 240

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            L P+ + L ++       GD S   ++  +   N  +   ++   N  +  YL      
Sbjct: 241 GLNPNEITLRLLARIS---GDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYL------ 291

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
                                    H GQ+   L  F  M    ++ D  T + +L +  
Sbjct: 292 -------------------------HSGQYSALLKCFADMVESDVECDQVTFILMLATAV 326

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            +  L LG+ VH    K  ++    + N+L++MY K  +   A  VF +M  RD+ S+ +
Sbjct: 327 KVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNS 386

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH----AGLVEEGCKHFLDM 452
           +I G+A +G   +A+ +F ++ + G++PD+ T   VL A S       L ++   H + +
Sbjct: 387 VIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKI 446

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           + V +    T     ++D + R   ++EA  L +      D   W A++  
Sbjct: 447 NNVSDSFVST----ALIDAYSRNRCMKEAEILFERHNF--DLVAWNAMMAG 491



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 11/210 (5%)

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           L+    S  L +G+  HA  +        ++ N L+ +Y+ CG +    ++F        
Sbjct: 46  LRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFD----KMP 101

Query: 184 QRDLVSWTTLIQAYVK-----MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
            RDLVSW +++ AY +     ++   +A L F  + Q  +    M L  +L  C   G +
Sbjct: 102 DRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
                 H Y       L  D F+  AL+++YLK G +   + +F+EMP ++VV WN M+ 
Sbjct: 162 WASESFHGYAC--KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLK 219

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
                G  +EA+D+       GL P++ TL
Sbjct: 220 AYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 154/336 (45%), Gaps = 19/336 (5%)

Query: 36  SVGQLKQFHAFIIKTGSPQH---QTQIL--YDKIISLSRGNEIENLSLQNPQVYLYNFII 90
           ++ Q KQ HA+ IK+G        + IL  Y K   +S   +    S+  P    +  +I
Sbjct: 532 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAA-QFAFDSIPVPDDVAWTTMI 590

Query: 91  Q-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
             C+ N     A  ++ +M + G+LP+ +T+  + KA     +L  G+Q+HA ++K    
Sbjct: 591 SGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCT 650

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
           ++ +V  +L+ +YA CG I   + LF   +      ++ +W  ++    +     E +  
Sbjct: 651 NDPFVGTSLVDMYAKCGSIDDAYCLFKRIE----MMNITAWNAMLVGLAQHGEGKETLQL 706

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F  M    ++PD +  + VLSACS  G +S   K H       + + P++  ++ L D  
Sbjct: 707 FKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYK-HMRSMHGDYGIKPEIEHYSCLADAL 765

Query: 270 LKCGNIPSARKVFDEMPVKNVVS-WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
            + G +  A  + + M ++   S + +++A    +G  +    +  ++  L L+P D + 
Sbjct: 766 GRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKL--LELEPLDSSA 823

Query: 329 VCVLNS--CANIGWLELGKWVHTYLDKNHINTD-GF 361
             +L++   A   W E+ K   T +  + +  D GF
Sbjct: 824 YVLLSNMYAAASKWDEM-KLARTMMKGHKVKKDPGF 858


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 186/550 (33%), Positives = 306/550 (55%), Gaps = 5/550 (0%)

Query: 59  ILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTY 118
           ++Y K   L    ++ +  L+   V     +   + N NPLE++ L+ +M + G+ PN +
Sbjct: 15  VMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDF 74

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T    LKAC     L +G+Q+H   +KT       V N+++ +Y+ CG I     +F   
Sbjct: 75  TFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEV- 133

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                 R+L+SW  +I  Y    +  +A++ F  M +     D       L ACS LG +
Sbjct: 134 ---MPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAI 190

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G +IH ++    F  S +  +  ALID+Y+KCG +  AR+VF  +  K+V+SW ++I 
Sbjct: 191 KEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALIL 250

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G    G   E++++FR+++   ++ D F L  ++   A+   ++ GK +H +  K     
Sbjct: 251 GYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGV 310

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           D  + N+++DMY KCG I++A  +F  M  R+V S+T MI G   HG   +A+ +F EM 
Sbjct: 311 DISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQ 370

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
               EPD+VT++ VL  CSH+GLVE+G ++F  +   + ++ + EHY CMVDL GRAG +
Sbjct: 371 LDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRL 430

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
           +EA +L+ SMPL  +  +W  LL AC++H  +EL + V   L+R + E    Y++M+NIY
Sbjct: 431 KEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIY 490

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           +    WKE  ++R+ +K +K+KK  G S VE+  E + F  GD +HP T +I+++L E+ 
Sbjct: 491 ADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEME 550

Query: 599 HQSKNH-GYI 607
            + K   GY+
Sbjct: 551 RRMKEELGYV 560



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/440 (28%), Positives = 211/440 (47%), Gaps = 51/440 (11%)

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ +Y  CG +     +F        +R++VSWT L+  +++   P E++L F  M  
Sbjct: 11  NDLIVMYGKCGRLGVACDVFD----RMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGL 66

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
           + ++P+       L AC  L  L +G +IH       F++     + N++IDMY KCG I
Sbjct: 67  SGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVN--VVGNSIIDMYSKCGRI 124

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A  +F+ MPV+N++SWN+MIAG T  G  ++AL +F++MQ +G   D+FT    L +C
Sbjct: 125 NEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKAC 184

Query: 336 ANIGWLELGKWVHTYLDKN----HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           +++G ++ G  +H +L        +NT   +  AL+D+Y KCG++  A  VF  ++ + V
Sbjct: 185 SDLGAIKEGNQIHAFLITGGFLYSVNTA--VAGALIDLYVKCGKLFMARRVFSHIEEKHV 242

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------ 445
            S+TA+I+G A  G   +++++F ++ +  I+ D      ++   +   LV++G      
Sbjct: 243 ISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAF 302

Query: 446 ------------CKHFLDM----------SRVYNLQPQTE--HYGCMVDLFGRAGLIREA 481
                       C   LDM           R+++  P      +  M+  +G+ GL +EA
Sbjct: 303 AIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEA 362

Query: 482 LDLIKSMPL---VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA----YILM 534
           + L   M L    PD   + A+L  C     VE  +     L  +   G  A    Y  M
Sbjct: 363 IRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSY--HGIKARVEHYACM 420

Query: 535 TNIYSSKNRWKEALKLRKKM 554
            ++     R KEA  L   M
Sbjct: 421 VDLLGRAGRLKEAKNLVDSM 440



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 125/220 (56%), Gaps = 1/220 (0%)

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           D+ + N LI MY KCG +  A  VFD M  +NVVSW +++ G    G   E+L +F +M 
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMG 65

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             G+KP+DFT    L +C  +  L++G+ +H    K   +    +GN+++DMY+KCGRI+
Sbjct: 66  LSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRIN 125

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
           +A  +F  M  R++ S+ AMI G  + G   KAL +F +M +VG   DE TF   L ACS
Sbjct: 126 EAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACS 185

Query: 438 HAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
             G ++EG + H   ++  +     T   G ++DL+ + G
Sbjct: 186 DLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCG 225



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 138/309 (44%), Gaps = 22/309 (7%)

Query: 28  SPRLESSKSVGQLK---QFHAFIIKTGSPQHQTQI--------LYDKIISLSRGNEIENL 76
           +  L++   +G +K   Q HAF+I TG   +            LY K   L     + + 
Sbjct: 178 TSTLKACSDLGAIKEGNQIHAFLI-TGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSH 236

Query: 77  SLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
             +   +     I+      N  E++ L+R++    +  + + L  ++        ++ G
Sbjct: 237 IEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQG 296

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+HA+++K     ++ V N+++ +Y  CG+I    +LF         R+++SWT +I  
Sbjct: 297 KQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLF----SEMPARNVISWTVMITG 352

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y K     EAI  F +M   +  PD +  + VL  CS  G +  G +    +   H  + 
Sbjct: 353 YGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYH-GIK 411

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRR 315
             V  +  ++D+  + G +  A+ + D MP++ NV  W ++++     G     L++ + 
Sbjct: 412 ARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGD----LELGKE 467

Query: 316 MQGLGLKPD 324
           + G+ L+ D
Sbjct: 468 VGGILLRLD 476


>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 531

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 201/543 (37%), Positives = 291/543 (53%), Gaps = 60/543 (11%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL-SNVYVFNT 157
           L + AL R  LIK L P T             ++      +H    K  LL +  ++   
Sbjct: 6   LSSTALLR--LIKSLSPAT------------PRAHLSASGIHCLLFKAGLLHAGAHLPTA 51

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+  Y   G  ++ H    F + P   + LV+ T + +A+       +A+  F DM    
Sbjct: 52  LLSAYGALG--RSGHARDLFDEMPN--QSLVARTAMARAHAVSGQAAQALDLFQDMIADG 107

Query: 218 LRPDGMILVIVLSACSKLGDL----SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
             PD + L +VL+AC   G      S G  +H +I      + PDVF+   LI +Y + G
Sbjct: 108 FMPDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVA--CGIEPDVFVSTELIRVYGERG 165

Query: 274 NIPSARKVFDEMPVK-------------------------------NVVSWNSMIAGLTH 302
            +  AR+VFD MP K                               +VVSWN++IAG   
Sbjct: 166 EMTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCL 225

Query: 303 RGQFKEALDIFRRM---QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
            G+ KEAL +FR+M       + P+  T+  VL++CA  G LE G WVH Y+DKN +N +
Sbjct: 226 VGRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDN 285

Query: 360 GFIGNALVDMYAKCGRIDQAFGVF-RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           G +   L+DMYAKCG ID+A  VF ++   RD+YS+T +I GLA+HG+A   L +FS M 
Sbjct: 286 GTLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQ 345

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             G+ PD+VTFVGVL+AC+H GLV+EG  HF  M   Y + P+ EHYGCM+DL GR G +
Sbjct: 346 DSGMCPDDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDLLGRVGRL 405

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            EA  +I++MP+ P+  +WGA L ACK+H+ VEL EI    + R +P+   A ++M+++Y
Sbjct: 406 PEAYRMIQTMPMKPNMVIWGAFLSACKVHSSVELGEIAAAEVTRLDPDDPWARVMMSSMY 465

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           +    W    + R++M   ++KKTPGCS V + GE +EF  G   HP   EI  +L+ + 
Sbjct: 466 AKAQDWSGLARERREMNSLQMKKTPGCSSVALDGEVHEFVAGGNQHPLCAEICSVLETVE 525

Query: 599 HQS 601
            QS
Sbjct: 526 AQS 528


>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g05240-like [Glycine max]
          Length = 552

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 188/497 (37%), Positives = 291/497 (58%), Gaps = 11/497 (2%)

Query: 81  PQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           P VY++N +I+  ++N NP  ++ LYR+++  G  P+ +T P+VLKAC        G+ +
Sbjct: 56  PSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCAIADQDCGKCI 115

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H   +K+   ++ Y    L+ +Y  C  +K+  K+F          ++V+WT LI  YV 
Sbjct: 116 HCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFD----NIPIWNVVAWTCLIAGYVN 171

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN----- 254
            + P EA+  F DM    + P+ + +V  L  C++  D   G  +H++I    ++     
Sbjct: 172 NNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMST 231

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
            + ++ +  A+++MY KCG+   AR +F++MP +N+VSWNSMI       + KEALD+F 
Sbjct: 232 SNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFF 291

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
            M   G+ PD  T + VL+ CA++  L LG+ VH YL K  I TD  +  AL+DMYAK G
Sbjct: 292 DMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTG 351

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ-VGIEPDEVTFVGVL 433
            +  A  +F S++ RDV  +T+MI GLA+HG   +AL +F  M +   + PD +T++GVL
Sbjct: 352 GLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITYIGVL 411

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
            ACSH GLVEE  KHF  M+ +Y++ P  EHYGCMVDL  R+G   EA  L+++M + P+
Sbjct: 412 FACSHVGLVEEAKKHFRLMTEMYSIVPGREHYGCMVDLLSRSGHFGEAERLMETMAIQPN 471

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
             + GALL  C+IH  + +A  V E L   E    GA++L++NIY+   RW++    RK 
Sbjct: 472 ISIXGALLYGCQIHENLXVANQVKERLTELESCQSGAHVLLSNIYAKAGRWEDVNGTRKV 531

Query: 554 MKERKVKKTPGCSLVEV 570
           MK +++ K  G S VE+
Sbjct: 532 MKHKRITKIIGHSSVEM 548



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 17/242 (7%)

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G+I +A  VF ++   +V  WNSMI G  +    + ++ ++R++   G  PD FT   VL
Sbjct: 41  GDINNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVL 100

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +C  I   + GK +H  + K+    D +    L+ MY  C  +     VF ++   +V 
Sbjct: 101 KACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVV 160

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGL 441
           ++T +I G   + + ++AL +F +MS  G+EP+E+T V  L  C+           H  +
Sbjct: 161 AWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQHI 220

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
            + G   F+  S   N+   T     +++++ + G  + A DL   MP   +   W +++
Sbjct: 221 RKAGYDPFMSTSNS-NIILATA----ILEMYAKCGSFKIARDLFNKMPQ-RNIVSWNSMI 274

Query: 502 GA 503
            A
Sbjct: 275 NA 276


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 179/502 (35%), Positives = 289/502 (57%), Gaps = 8/502 (1%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           M I+GL         VL  C    ++R GQ+VHA+ +KT     VY+   L+ LY  C  
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           +    ++         +R++VSWT +I  Y +  Y +EA+  F +M  +   P+      
Sbjct: 61  LGDARRVLD----EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFAT 116

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL++C+      LG +IH  +    F     +F+ ++L+DMY K G I  AR+VFD +P 
Sbjct: 117 VLTSCTSSSGFQLGRQIHSLVIKTSFE--SHIFVGSSLLDMYAKAGKICEARRVFDGLPE 174

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           ++VVS  ++I+G    G  +EALD+FRR+Q  G++ +  T   VL + + +  L+ G+ V
Sbjct: 175 RDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQV 234

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H+++ +  +     + N+L+DMY+KCG +  +  +F SM  R V S+ AM+VG + HG  
Sbjct: 235 HSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLG 294

Query: 408 WKALDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDM-SRVYNLQPQTEHY 465
            +A+++F  M +   ++PD VTF+ VLS CSH G+ + G + F +M ++    +P+ EHY
Sbjct: 295 REAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHY 354

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
           GC+VDLFGRAG + EA + IK MP  P A +WG+LLGAC++H  V + E V   L+  E 
Sbjct: 355 GCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIES 414

Query: 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585
           E  G Y++++N+Y+S  RW +   +R+ MKE+ V K PG S +E+    + F   D+SHP
Sbjct: 415 ENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHP 474

Query: 586 KTLEIYKLLDEIMHQSKNHGYI 607
           +  E++  + E+  + K  GY+
Sbjct: 475 RKEEVFAKVRELSIKIKEAGYV 496



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 194/379 (51%), Gaps = 24/379 (6%)

Query: 33  SSKSVGQLKQFHAFIIKTG-SP----QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYN 87
           S  ++ + ++ HA +IKT   P    + +  +LY+K   L     + +   +   V    
Sbjct: 22  SQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTA 81

Query: 88  FIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
            I          EA+ L+ EML+ G  PN +T   VL +C  S   ++G+Q+H+  +KT+
Sbjct: 82  MISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTS 141

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
             S+++V ++L+ +YA  G I    ++F        +RD+VS T +I  Y ++    EA+
Sbjct: 142 FESHIFVGSSLLDMYAKAGKICEARRVF----DGLPERDVVSCTAIISGYAQLGLDEEAL 197

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F  + +  +R + +    VL+A S L  L  G ++H ++      L   V + N+LID
Sbjct: 198 DLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL--RAKLPFYVVLQNSLID 255

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDF 326
           MY KCG++  +R++FD MP + V+SWN+M+ G +  G  +EA+++F+ M+    +KPD  
Sbjct: 256 MYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSV 315

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-----NALVDMYAKCGRIDQAFG 381
           T + VL+ C++ G  + G  +   +       DGF         +VD++ + GR+++AF 
Sbjct: 316 TFLAVLSGCSHGGMEDRGLEIFYEMVN---QKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 372

Query: 382 VFRSMKCRDVYSYTAMIVG 400
             + M     +  TA I G
Sbjct: 373 FIKKMP----FEPTAAIWG 387


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 178/488 (36%), Positives = 292/488 (59%), Gaps = 10/488 (2%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           +L + + +C    S+     +HA  +K+   S+ ++ + L+ +Y   G  +   +LF   
Sbjct: 144 SLVFAISSC---TSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD-- 198

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGD 237
                 RDLVSW +L+       Y    + +F  M  ++  +P+ + L+ V+SAC+ +G 
Sbjct: 199 --EMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGA 256

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L  G  +H  +      +S    + N+LI+MY K G + +A ++F+EMPV+++VSWNSM+
Sbjct: 257 LDEGKSLHGVVVK--LGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMV 314

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
               H G  ++ +D+F  M+  G+ PD  T+V +L +C + G     + +H Y+ +   N
Sbjct: 315 VIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN 374

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            D  I  AL+++YAK GR++ +  +F  +K RD  ++TAM+ G A+H    +A+ +F  M
Sbjct: 375 ADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLM 434

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
            + G+E D VTF  +LSACSH+GLVEEG K+F  MS VY ++P+ +HY CMVDL GR+G 
Sbjct: 435 VKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGR 494

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
           + +A +LIKSMP+ P + VWGALLGAC+++  VEL + V E L+  +P     YI+++NI
Sbjct: 495 LEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNI 554

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           YS+   W+ A K+R  MKER++ + PGCS +E   + + F  GD+ HP++ EI+  L+E+
Sbjct: 555 YSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEEL 614

Query: 598 MHQSKNHG 605
           + +    G
Sbjct: 615 IRKIXEAG 622



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 173/367 (47%), Gaps = 21/367 (5%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS----LSRGNEIENL--SLQNPQVY 84
           + S  SV      HA +IK  S  +    + D+++S    L    + + L   + N  + 
Sbjct: 149 ISSCTSVSYCSAIHARVIK--SLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLV 206

Query: 85  LYNFIIQCLSNANPLEAI--ALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
            +N ++  LS    L A   A  R     G  PN  TL  V+ AC    +L  G+ +H  
Sbjct: 207 SWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGV 266

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +K  +     V N+L+ +Y   G + A  +LF         R LVSW +++  +    Y
Sbjct: 267 VVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF----EEMPVRSLVSWNSMVVIHNHNGY 322

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             + +  F  M +A + PD   +V +L AC+  G       IH YI    FN   D+ I 
Sbjct: 323 AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN--ADIIIA 380

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
            AL+++Y K G + ++  +F+E+  ++ ++W +M+AG       +EA+ +F  M   G++
Sbjct: 381 TALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVE 440

Query: 323 PDDFTLVCVLNSCANIGWLELGK---WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            D  T   +L++C++ G +E GK    + + + +     D +  + +VD+  + GR++ A
Sbjct: 441 VDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY--SCMVDLLGRSGRLEDA 498

Query: 380 FGVFRSM 386
           + + +SM
Sbjct: 499 YELIKSM 505


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/482 (36%), Positives = 277/482 (57%), Gaps = 9/482 (1%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR---LYAVCGLIKAVHKLFHFRQHPQAQR 185
           +  SL   +Q+ AY++KT L S++ V   L+    L      +   H LF         +
Sbjct: 38  KCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFD----QILDK 93

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           D++ +  + + Y + + P  A   F ++  + L PD      +L AC+    L  G+ +H
Sbjct: 94  DIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLH 153

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
            +       L+ +++I   LI+MY +C ++ +AR VFDEM    +VS+N++I G     Q
Sbjct: 154 CFAVK--LGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQ 211

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
             EAL +FR +Q   ++P D T++ V+ SCA +G L+LGKW+H Y+ K   +    +  A
Sbjct: 212 PNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTA 271

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           L+DM+AKCG +  A  +F  M+ RD  +++AMIV  A HG   KA+ +F EM + G+ PD
Sbjct: 272 LIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPD 331

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
           E+TF+G+L ACSHAGLVE+G  +F  MS+ Y + P  +HYGCMVDL GRAG + EA + +
Sbjct: 332 EITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFV 391

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
             + +     +W  LL AC  H  VE+A+ V+E +   +    G Y++++N+Y+   RW+
Sbjct: 392 DKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWE 451

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           +   LRK MK+R V K PGCS VEV    +EF  GD  H  ++E+ + LDE+M + K  G
Sbjct: 452 DVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVG 511

Query: 606 YI 607
           Y+
Sbjct: 512 YV 513



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 198/376 (52%), Gaps = 25/376 (6%)

Query: 16  INTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIEN 75
           IN    LSLL +        S+ +LKQ  A+ IKT + Q    +L  K+I+    N   +
Sbjct: 27  INQLHPLSLLSKC------TSLNELKQIQAYTIKT-NLQSDISVL-TKLINFCTLNPTTS 78

Query: 76  L---------SLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLK 125
                      + +  + L+N + +  + +N P  A +L+ E+L  GLLP+ YT   +LK
Sbjct: 79  YMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLK 138

Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
           AC  S++LR G  +H +++K  L  N+Y+  TL+ +YA C  + A   +F   + P    
Sbjct: 139 ACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPC--- 195

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
            +VS+  +I  Y +   P EA+  F ++  +N+ P  + ++ V+ +C+ LG L LG  IH
Sbjct: 196 -IVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIH 254

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
            Y+    F+    V ++ ALIDM+ KCG++  A  +F+ M V++  +W++MI      G 
Sbjct: 255 EYVKKKGFD--KYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGD 312

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-N 364
             +A+ +F  M+  G++PD+ T + +L +C++ G +E G+     + K +  T G     
Sbjct: 313 GLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYG 372

Query: 365 ALVDMYAKCGRIDQAF 380
            +VD+  + G +D+A+
Sbjct: 373 CMVDLLGRAGHLDEAY 388


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/509 (35%), Positives = 291/509 (57%), Gaps = 8/509 (1%)

Query: 99  LEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           LEA+  +REML + +  PN +       AC +      G+Q+H   +K  L S+++   +
Sbjct: 282 LEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCS 341

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L  +YA CG +++   +F+  + P    DLV+W  +I  +  +    E+   F  M    
Sbjct: 342 LCDMYAKCGFLESARTVFYHIEKP----DLVAWNAIIAGFASVSNAKESSSFFSQMRHTG 397

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           L P+ + ++ +L ACS+   L+ GI++H YI    FNL  D+ + N+L+ MY KC N+  
Sbjct: 398 LVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNL--DIPVCNSLLSMYSKCSNLND 455

Query: 278 ARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
           A +VF+++  K ++VSWN+++     + Q  E L + + M    +KPD  TL  VL S  
Sbjct: 456 ALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSG 515

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            I   E+G  +H ++ K+ +N D  + NAL++MY KCG ++ A  +F S+   D+ S+++
Sbjct: 516 QIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSS 575

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +IVG A  G   +A ++F  M  +G++P+E+TFVG+L+ACSH G+VEEG K +  M   Y
Sbjct: 576 LIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDY 635

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            + P  EH  CMVDL  RAG +  A D IK MP VPD  VW  LL ACK+H  +E+ +  
Sbjct: 636 RISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRA 695

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            EN+++ +P    A +++ NI++S   WK+  +LR  M+   V K PG S +E+  + + 
Sbjct: 696 AENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHV 755

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           F   D  HP+  +IY +L+E+M Q  + G
Sbjct: 756 FLAEDNLHPERGKIYTMLEELMLQILDDG 784



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/484 (25%), Positives = 232/484 (47%), Gaps = 36/484 (7%)

Query: 62  DKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLP 121
           DKIISL + N      L    +  ++   +C  +++PL+++              TYT  
Sbjct: 67  DKIISLCKKN------LHREALKAFDIFQKC--SSSPLKSV--------------TYT-- 102

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           +++ AC   +SL  G+++H + +      ++ + N ++ +Y  CG +K    +F      
Sbjct: 103 HLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFD----S 158

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
              +++VSWT++I  Y +      AI  +  M ++   PD      ++ +CS L D  L 
Sbjct: 159 MPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLA 218

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            ++H ++  + F    D+   NALI MY K   +  A  VF  + +K+++SW SMIAG +
Sbjct: 219 RQLHAHVLKSEFG--ADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFS 276

Query: 302 HRGQFKEALDIFRRMQGLGL-KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
             G   EAL  FR M    + +P++F      ++C+ +   + G+ +H    K  + +D 
Sbjct: 277 QLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDL 336

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
           F G +L DMYAKCG ++ A  VF  ++  D+ ++ A+I G A    A ++   FS+M   
Sbjct: 337 FAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHT 396

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
           G+ P++VT + +L ACS   ++  G + H   +   +NL         ++ ++ +   + 
Sbjct: 397 GLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPV--CNSLLSMYSKCSNLN 454

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           +AL + + +    D   W  LL AC    + +  E++    + F       ++ +TN+  
Sbjct: 455 DALQVFEDIGNKADIVSWNTLLTACL--QQNQAGEVLRLTKLMFASRIKPDHVTLTNVLV 512

Query: 540 SKNR 543
           S  +
Sbjct: 513 SSGQ 516



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 201/381 (52%), Gaps = 16/381 (4%)

Query: 78  LQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           ++ P +  +N II   ++ +N  E+ + + +M   GL+PN  T+  +L AC +   L  G
Sbjct: 362 IEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHG 421

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            QVH+Y +K     ++ V N+L+ +Y+ C  +    ++F   +    + D+VSW TL+ A
Sbjct: 422 IQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVF---EDIGNKADIVSWNTLLTA 478

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            ++ +   E +     M  + ++PD + L  VL +  ++    +G +IH +I  +  NL 
Sbjct: 479 CLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNL- 537

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D+ + NALI+MY KCG++  ARK+FD +   +++SW+S+I G    G  KEA ++FR M
Sbjct: 538 -DISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTM 596

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           +GLG+KP++ T V +L +C++IG +E G K   T  +   I+      + +VD+ A+ G 
Sbjct: 597 RGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGC 656

Query: 376 IDQAFGVFRSMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           +D A    + M    DV  +  ++    +HG     L++    ++  ++ D      V+ 
Sbjct: 657 LDVAEDFIKQMPFVPDVVVWKTLLAACKVHGN----LEVGKRAAENVLKIDPSNSAAVVM 712

Query: 435 ACSHAGLVEEGCKHFLDMSRV 455
            C+    +     H+ D +R+
Sbjct: 713 LCN----IHASSGHWKDFARL 729



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 145/301 (48%), Gaps = 16/301 (5%)

Query: 42  QFHAFIIKTGS----PQHQTQI-LYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLSN 95
           Q H++I+K G     P   + + +Y K  +L+   ++ E++  +   V     +  CL  
Sbjct: 423 QVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQ 482

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
               E + L + M    + P+  TL  VL +  Q  S  VG Q+H + MK+ L  ++ V 
Sbjct: 483 NQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVS 542

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ +Y  CG ++   K+F    +P    D++SW++LI  Y +     EA   F  M  
Sbjct: 543 NALINMYTKCGSLECARKMFDSIGNP----DIISWSSLIVGYAQAGCGKEAFELFRTMRG 598

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             ++P+ +  V +L+ACS +G +  G+K++R + ++ + +SP     + ++D+  + G +
Sbjct: 599 LGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQED-YRISPTKEHCSCMVDLLARAGCL 657

Query: 276 PSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
             A     +MP V +VV W +++A     G     L++ +R     LK D      V+  
Sbjct: 658 DVAEDFIKQMPFVPDVVVWKTLLAACKVHGN----LEVGKRAAENVLKIDPSNSAAVVML 713

Query: 335 C 335
           C
Sbjct: 714 C 714



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 125/259 (48%), Gaps = 15/259 (5%)

Query: 253 FN-LSPDVFIHNALIDMYLKCGNIP-SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
           FN  SP   I N    ++L   +I  + +  F   P+      +  I  L  +   +EAL
Sbjct: 23  FNPFSPTSSIKNFKPQLHLALSHIRLNTQLAFSPCPLTVHYPHDDKIISLCKKNLHREAL 82

Query: 311 ---DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
              DIF++     LK   +T +  +N+C+++  LE G+ +H ++   +   D  + N ++
Sbjct: 83  KAFDIFQKCSSSPLKSVTYTHL--INACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHIL 140

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
            MY KCG + +A  +F SM  ++V S+T+MI G + +G+   A+ ++ +M + G  PD  
Sbjct: 141 SMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHF 200

Query: 428 TFVGVLSACSHAG---LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           TF  ++ +CS      L  +   H L      +L  Q      ++ ++ +   + +A+++
Sbjct: 201 TFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNA----LISMYTKFSQMADAINV 256

Query: 485 IKSMPLVPDAFVWGALLGA 503
              + ++ D   WG+++  
Sbjct: 257 FSRI-IIKDLISWGSMIAG 274


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/569 (33%), Positives = 319/569 (56%), Gaps = 14/569 (2%)

Query: 44  HAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL---QNPQ--VYLYNFIIQ-CLSNAN 97
           H +++K G    Q  +    I   ++ N IE+  +   + PQ  +  +N II  C SN  
Sbjct: 7   HGYLVKYGFGA-QCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGL 65

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
             +A+ L+  M ++G   ++ TL  V+ AC QS    +G  VH YS++T L+S   + N 
Sbjct: 66  YDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNA 125

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +Y+ C   ++ +K+F   +    Q+++VSWT +I +Y +  +  +    F +M    
Sbjct: 126 LLDMYSNCSDWRSTNKIFRNME----QKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEG 181

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           +RPD   +   L A +    L  G  +H Y   N   +   + + NAL++MY+KCG +  
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRN--GIEEVLPVANALMEMYVKCGYMEE 239

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           AR +FD +  K+ +SWN++I G +      EA  +F  M  L L+P+  T+ C+L + A+
Sbjct: 240 ARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEML-LQLRPNAVTMACILPAAAS 298

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +  LE G+ +H Y  +     D F+ NALVDMY KCG +  A  +F  +  +++ S+T M
Sbjct: 299 LSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIM 358

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I G  +HG+   A+ +F +M   GI+PD  +F  +L ACSH+GL +EG + F  M   + 
Sbjct: 359 IAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHR 418

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           ++P+ +HY CMVDL    G ++EA + I++MP+ PD+ +W +LL  C+IH  V+LAE V 
Sbjct: 419 IEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVA 478

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           E +   EPE  G Y+L+ NIY+   RW+   KL+ K+  R +++  GCS +EV G+ + F
Sbjct: 479 EMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIF 538

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
              +++HP+ + I + LD++  + +  G+
Sbjct: 539 FAENRNHPQGMRIAEFLDDVARRMQEEGH 567



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 79/190 (41%), Gaps = 33/190 (17%)

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           VH YL K        + NAL+  YAK  RI+ A  VF  M  RD+ S+ ++I G A +G 
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGL 65

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSAC--SH--------------AGLVEE------ 444
             KA+++F  M   G E D  T + V+ AC  SH               GL+ E      
Sbjct: 66  YDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNA 125

Query: 445 ------GCKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMPL---VPD 493
                  C  +   ++++    Q     +  M+  + RAG   +   L + M L    PD
Sbjct: 126 LLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPD 185

Query: 494 AFVWGALLGA 503
            F   + L A
Sbjct: 186 VFAITSALDA 195


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 179/514 (34%), Positives = 288/514 (56%), Gaps = 7/514 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N+   EAI  +  M I G +P  +     ++AC    S+ +G+Q+H  ++K  + S ++V
Sbjct: 19  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 78

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L  +Y+ CG +    K+F   + P   +D VSWT +I  Y K+    EA+L+F  M 
Sbjct: 79  GSNLEDMYSKCGAMFDACKVFE--EMPC--KDEVSWTAMIDGYSKIGEFEEALLAFKKMI 134

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              +  D  +L   L AC  L     G  +H  +         D+F+ NAL DMY K G+
Sbjct: 135 DEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV--KLGFESDIFVGNALTDMYSKAGD 192

Query: 275 IPSARKVFD-EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
           + SA  VF  +   +NVVS+  +I G     Q ++ L +F  ++  G++P++FT   ++ 
Sbjct: 193 MESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIK 252

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +CAN   LE G  +H  + K + + D F+ + LVDMY KCG ++QA   F  +      +
Sbjct: 253 ACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIA 312

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           + +++     HG    A+ IF  M   G++P+ +TF+ +L+ CSHAGLVEEG  +F  M 
Sbjct: 313 WNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMD 372

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           + Y + P  EHY C++DL GRAG ++EA + I  MP  P+AF W + LGAC+IH   E+ 
Sbjct: 373 KTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMG 432

Query: 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
           ++  E LV+ EP+  GA +L++NIY+++ +W++   +R +M++  VKK PG S V+V  +
Sbjct: 433 KLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYK 492

Query: 574 FYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            + F   D SHP+   IY+ LD ++ Q K  GY+
Sbjct: 493 THVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYV 526



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 177/339 (52%), Gaps = 5/339 (1%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           QR+LVSWT +I    +    +EAI +F  M      P        + AC+ LG + +G +
Sbjct: 3   QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 62

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303
           +H       F +  ++F+ + L DMY KCG +  A KVF+EMP K+ VSW +MI G +  
Sbjct: 63  MHCLAL--KFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
           G+F+EAL  F++M    +  D   L   L +C  +   + G+ VH+ + K    +D F+G
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 364 NALVDMYAKCGRIDQAFGVFR-SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           NAL DMY+K G ++ A  VF    +CR+V SYT +I G     +  K L +F E+ + GI
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
           EP+E TF  ++ AC++   +E+G +    + ++ N          +VD++G+ GL+ +A+
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKI-NFDEDPFVSSILVDMYGKCGLLEQAI 299

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
                +   P    W +L+     H   + A  + E +V
Sbjct: 300 QAFDEIG-DPTEIAWNSLVSVFGQHGLGKDAIKIFERMV 337



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 34/261 (13%)

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           MP +N+VSW +MI+GL+   +F EA+  F  M+  G  P  F     + +CA++G +E+G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           K +H    K  I ++ F+G+ L DMY+KCG +  A  VF  M C+D  S+TAMI G +  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGLVEEGCKH----- 448
           G+  +AL  F +M    +  D+      L AC            H+ +V+ G +      
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 449 --FLDM----------SRVYNLQPQTEH---YGCMVDLFGRAGLIREALDL---IKSMPL 490
               DM          S V+ +  +  +   Y C++D +     I + L +   ++   +
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 491 VPDAFVWGALLGACKIHAKVE 511
            P+ F + +L+ AC   A +E
Sbjct: 241 EPNEFTFSSLIKACANQAALE 261


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 185/476 (38%), Positives = 290/476 (60%), Gaps = 15/476 (3%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL-----IKAVHKLFHFRQHPQA 183
           + +S+RV +Q+HA  +  A+  +   F  L ++   C L     I    KLF   Q P  
Sbjct: 66  KCRSMRVLRQIHARLLTHAMPISSISFG-LCKIIGFCALSPYGDIDYARKLFSQIQRP-- 122

Query: 184 QRDLVSWTTLIQAYVKMDYPT-EAILSFFDMCQANL-RPDGMILVIVLSACSKLGDLSLG 241
             ++ SW ++I+   +   P+ E ++ F  M +     P+   +  VL ACS +  L  G
Sbjct: 123 --NIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEG 180

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            ++H  +  + F  SP  F+  AL++ Y KC +I  A KVFDE+  +N+V+W++MI+G  
Sbjct: 181 QQVHANVLKSGFGSSP--FVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYA 238

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
             G   EAL +FR MQ  G+ PD+ T+V V+++CA  G L+ GKWVH Y++K  I TD  
Sbjct: 239 RIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLE 298

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           +  ALV+MYAKCG I++A  VF +M  +D  ++++MIVGLAI+G A  AL+ F  M +  
Sbjct: 299 LSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAK 358

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           ++P+ VTF+GVLSAC+H+GLV EG +++  M   + + P  E YGCMVDL  RA L+ +A
Sbjct: 359 VKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGCMVDLLCRASLVEDA 417

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
             L+++MP+ P+  +W  LL  CK    ++ +E+V + L+  EP     YIL++N+Y+S 
Sbjct: 418 CTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASM 477

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           ++W++  ++RKKMK   +K  PGCS +EV G  +EF  GD SHP+ +E+ ++L +I
Sbjct: 478 SQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDI 533



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 160/324 (49%), Gaps = 27/324 (8%)

Query: 13  YNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQIL------YDK 63
           Y + NTF  ++ + ++  + S+   GQ  Q HA ++K+G   SP  +T ++       D 
Sbjct: 156 YPNPNTFT-MAFVLKACSIVSALEEGQ--QVHANVLKSGFGSSPFVETALVNFYAKCEDI 212

Query: 64  IISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYV 123
           +++    +EI + +L      +  +    L N    EA+ L+R+M   G++P+  T+  V
Sbjct: 213 VLASKVFDEITDRNLVAWSTMISGYARIGLVN----EALGLFRDMQKAGVVPDEVTMVSV 268

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           + AC  S +L  G+ VHAY  K  + +++ +   L+ +YA CG I+   ++F        
Sbjct: 269 ISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVF----DAMP 324

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
            +D  +W+++I          +A+  FF M +A ++P+ +  + VLSAC+  G +S G  
Sbjct: 325 VKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEG-- 382

Query: 244 IHRYITDN-HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLT 301
             RY +    F + P + ++  ++D+  +   +  A  + + MP+  N V W +++ G  
Sbjct: 383 -RRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCK 441

Query: 302 HRGQFKEALDIFRRMQGLGLKPDD 325
                 ++  + +R+  L L+P +
Sbjct: 442 KSKNLDKSEVVAQRL--LELEPHN 463


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 184/516 (35%), Positives = 292/516 (56%), Gaps = 7/516 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N +   +++L+ EM  +G+ PN +T    LKAC    +L  G Q+H + +K      V V
Sbjct: 85  NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEV 144

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N+L+ +Y+ CG I    K+F         R L+SW  +I  +V   Y ++A+ +F  M 
Sbjct: 145 GNSLVDMYSKCGRINEAEKVFR----RIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQ 200

Query: 215 QANL--RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           +AN+  RPD   L  +L ACS  G +  G +IH ++  + F+      I  +L+D+Y+KC
Sbjct: 201 EANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKC 260

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G + SARK FD++  K ++SW+S+I G    G+F EA+ +F+R+Q L  + D F L  ++
Sbjct: 261 GYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSII 320

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
              A+   L  GK +     K     +  + N++VDMY KCG +D+A   F  M+ +DV 
Sbjct: 321 GVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVI 380

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+T +I G   HG   K++ IF EM +  IEPDEV ++ VLSACSH+G+++EG + F  +
Sbjct: 381 SWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKL 440

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              + ++P+ EHY C+VDL GRAG ++EA  LI +MP+ P+  +W  LL  C++H  +EL
Sbjct: 441 LETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIEL 500

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            + V + L+R + +    Y++M+N+Y     W E    R+    + +KK  G S VE+  
Sbjct: 501 GKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIER 560

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH-GYI 607
           E + FR G+ SHP T  I + L E   + +   GY+
Sbjct: 561 EVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYV 596



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 220/451 (48%), Gaps = 16/451 (3%)

Query: 113 LLPNTY-TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           ++PN    L  +L+ C +      G QVH Y +K+    N+   N L+ +Y  C      
Sbjct: 1   MIPNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMA 60

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF-DMCQANLRPDGMILVIVLS 230
           +K+F        +R++VSW+ L+  +V ++   +  LS F +M +  + P+       L 
Sbjct: 61  YKVF----DSMPERNVVSWSALMSGHV-LNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLK 115

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           AC  L  L  G++IH +     F +  +V   N+L+DMY KCG I  A KVF  +  +++
Sbjct: 116 ACGLLNALEKGLQIHGFCLKIGFEMMVEV--GNSLVDMYSKCGRINEAEKVFRRIVDRSL 173

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK--PDDFTLVCVLNSCANIGWLELGKWVH 348
           +SWN+MIAG  H G   +ALD F  MQ   +K  PD+FTL  +L +C++ G +  GK +H
Sbjct: 174 ISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIH 233

Query: 349 TYLDKN--HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
            +L ++  H  +   I  +LVD+Y KCG +  A   F  +K + + S++++I+G A  G+
Sbjct: 234 GFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGE 293

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
             +A+ +F  + ++  + D      ++   +   L+ +G K    ++       +T    
Sbjct: 294 FVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQG-KQMQALAVKLPSGLETSVLN 352

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
            +VD++ + GL+ EA      M L  D   W  ++     H   + +  +   ++R   E
Sbjct: 353 SVVDMYLKCGLVDEAEKCFAEMQL-KDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIE 411

Query: 527 GDG-AYILMTNIYSSKNRWKEALKLRKKMKE 556
            D   Y+ + +  S     KE  +L  K+ E
Sbjct: 412 PDEVCYLAVLSACSHSGMIKEGEELFSKLLE 442


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/512 (37%), Positives = 294/512 (57%), Gaps = 16/512 (3%)

Query: 99  LEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           +E+I ++R+++ +     +T TL  +L A  + Q LR+G Q+H+ + KT   S+ YV   
Sbjct: 202 VESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTG 261

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD---MC 214
            + LY+ CG IK    LF   + P    D+V++  +I  Y   +  TE  LS F    + 
Sbjct: 262 FISLYSKCGKIKMASTLFREFRRP----DIVAYNAMIHGYTS-NGETELSLSLFKELMLS 316

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
            A L+   ++ ++ +S     G L L   IH Y   ++F LS    +  AL  +Y K   
Sbjct: 317 GAKLKSSTLVSLVPVS-----GHLMLIYAIHGYSLKSNF-LS-HTSVSTALTTVYSKLNE 369

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I SARK+FDE P K++ SWN+MI+G T  G  ++A+ +FR MQ     P+  T+ C+L++
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSA 429

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA +G L LGKWVH  +      +  ++  AL+ MYAKCG I +A  +F  M  ++  ++
Sbjct: 430 CAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTW 489

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
             MI G  +HG   +AL IFSEM   GI P  VTF+ VL ACSHAGLV+EG + F  M  
Sbjct: 490 NTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIH 549

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y  +P  +HY C+VD+ GRAG ++ AL  I++MP+ P   VW  LLGAC+IH    LA 
Sbjct: 550 RYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLAR 609

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
            V E L   +P+  G ++L++NI+S+   + +A  +R+  K+RK+ K PG +L+E+    
Sbjct: 610 TVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETP 669

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           + F  GD+SHP+   I++ L+++  + +  GY
Sbjct: 670 HVFTSGDQSHPQVKAIHEKLEKLEGKMREAGY 701



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 228/499 (45%), Gaps = 20/499 (4%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIEN-----LSLQNPQVYL 85
            + S S+  L Q HA I+  G  ++   +L      LS    I       LS+Q P V+L
Sbjct: 27  FKRSTSISHLAQTHAQIVLHGF-RNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFL 85

Query: 86  YNFIIQCLS-NANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           +N +++  S N +P  ++A++  +     L PN+ T  + + A    +  R G  +H  +
Sbjct: 86  FNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQA 145

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +     S + + + ++++Y     ++   K+F        ++D + W T+I  Y K +  
Sbjct: 146 IVDGCDSELLLGSNIVKMYFKFWRVEDARKVF----DRMPEKDTILWNTMISGYRKNEMY 201

Query: 204 TEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
            E+I  F D+  ++  R D   L+ +L A ++L +L LG++IH   T          ++ 
Sbjct: 202 VESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKT--GCYSHDYVL 259

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
              I +Y KCG I  A  +F E    ++V++N+MI G T  G+ + +L +F+ +   G K
Sbjct: 260 TGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAK 319

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
               TLV ++      G L L   +H Y  K++  +   +  AL  +Y+K   I+ A  +
Sbjct: 320 LKSSTLVSLVPVS---GHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKL 376

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F     + + S+ AMI G   +G    A+ +F EM      P+ VT   +LSAC+  G +
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGAL 436

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
             G K   D+ R  + +        ++ ++ + G I EA  L   MP   +   W  ++ 
Sbjct: 437 SLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVTWNTMIS 494

Query: 503 ACKIHAKVELAEIVMENLV 521
              +H   + A  +   ++
Sbjct: 495 GYGLHGHGQEALTIFSEML 513


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 188/506 (37%), Positives = 295/506 (58%), Gaps = 11/506 (2%)

Query: 107 EMLIK-----GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRL 161
           EM+++     G  P++ TL  VL AC  +++L   ++ HA+++++ L   V V   ++  
Sbjct: 146 EMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDA 205

Query: 162 YAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221
           Y  CG I+A   +F +       ++ VSW  +I  Y +     EA+  F  M +  +   
Sbjct: 206 YCKCGDIRAARVVFDW----MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVT 261

Query: 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
            + ++  L AC +LG L  G+++H  +      L  +V + NALI MY KC  +  A  V
Sbjct: 262 DVSVLAALQACGELGCLDEGMRVHELLV--RIGLDSNVSVMNALITMYSKCKRVDLASHV 319

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           FDE+  +  VSWN+MI G    G  ++A+ +F RMQ   +KPD FTLV V+ + A+I   
Sbjct: 320 FDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDP 379

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
              +W+H Y  + H++ D ++  AL+DMYAKCGR++ A  +F S + R V ++ AMI G 
Sbjct: 380 LQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGY 439

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
             HG    A+++F EM  +GI P+E TF+ VLSACSHAGLV+EG ++F  M   Y L+P 
Sbjct: 440 GSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPG 499

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
            EHYG MVDL GRAG + EA   I+ MP+ P   V+GA+LGACK+H  VELAE   + + 
Sbjct: 500 MEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIF 559

Query: 522 RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581
              P+    ++L+ NIY++ + WK+  ++R  M++  ++KTPG S++++  E + F  G 
Sbjct: 560 ELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGS 619

Query: 582 KSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +H +  EIY  L +++ + K  GY+
Sbjct: 620 TNHQQAKEIYSRLAKLIEEIKAVGYV 645



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 144/509 (28%), Positives = 227/509 (44%), Gaps = 52/509 (10%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+A +  M   G  P   T   +LK C     L  G+ VHA      + S       L  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLR 219
           +YA C       ++F   + P   RD V+W  L+  Y +      A+     M  +   R
Sbjct: 103 MYAKCRRPADARRVFD--RMP--VRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGER 158

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + LV VL AC+    L+   + H +   +   L   V +  A++D Y KCG+I +AR
Sbjct: 159 PDSITLVSVLPACANARALAACREAHAFAIRS--GLEELVNVATAILDAYCKCGDIRAAR 216

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            VFD MP KN VSWN+MI G    G  +EAL +F RM   G+   D +++  L +C  +G
Sbjct: 217 VVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELG 276

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ G  VH  L +  ++++  + NAL+ MY+KC R+D A  VF  +  R   S+ AMI+
Sbjct: 277 CLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMIL 336

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH--------------------- 438
           G A +G +  A+ +F+ M    ++PD  T V V+ A +                      
Sbjct: 337 GCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQ 396

Query: 439 -----AGLVEEGCK-HFLDMSRVYNLQPQTEH---YGCMVDLFGRAGLIREALDL---IK 486
                  L++   K   ++++R+     +  H   +  M+  +G  G  + A++L   +K
Sbjct: 397 DVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMK 456

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAE---IVMENLVRFEPEGDGAYILMTNIYSSKNR 543
           S+ +VP+   + ++L AC     V+        M+     EP G   Y  M ++     +
Sbjct: 457 SIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEP-GMEHYGTMVDLLGRAGK 515

Query: 544 WKEALKLRKKMKERKVKKTPGCSLVEVYG 572
             EA    +KM        PG S   VYG
Sbjct: 516 LDEAWAFIQKM-----PMDPGLS---VYG 536



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 166/327 (50%), Gaps = 12/327 (3%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N +  EA+AL+  M+ +G+     ++   L+AC +   L  G +VH   ++  L SNV V
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ +Y+ C  +     +F        +R  VSW  +I    +     +A+  F  M 
Sbjct: 300 MNALITMYSKCKRVDLASHVF----DELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
             N++PD   LV V+ A + + D      IH Y    H  L  DV++  ALIDMY KCG 
Sbjct: 356 LENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLH--LDQDVYVLTALIDMYAKCGR 413

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  AR +F+    ++V++WN+MI G    G  K A+++F  M+ +G+ P++ T + VL++
Sbjct: 414 VNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSA 473

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           C++ G ++ G+   T + +++    G      +VD+  + G++D+A+   + M      S
Sbjct: 474 CSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLS 533

Query: 394 -YTAMIVGLAIHGKAWKALDIFSEMSQ 419
            Y AM+    +H    K +++  E +Q
Sbjct: 534 VYGAMLGACKLH----KNVELAEESAQ 556



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 132/256 (51%), Gaps = 4/256 (1%)

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           L  +  + D P  A+ +F  M  A   P       +L  C+  GDL+ G  +H  +    
Sbjct: 31  LRASAARSDLPA-ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAAR- 88

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
             +  +     AL +MY KC     AR+VFD MPV++ V+WN+++AG    G  + A+++
Sbjct: 89  -GIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEM 147

Query: 313 FRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
             RMQ   G +PD  TLV VL +CAN   L   +  H +  ++ +     +  A++D Y 
Sbjct: 148 VVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYC 207

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           KCG I  A  VF  M  ++  S+ AMI G A +G + +AL +F+ M + G++  +V+ + 
Sbjct: 208 KCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLA 267

Query: 432 VLSACSHAGLVEEGCK 447
            L AC   G ++EG +
Sbjct: 268 ALQACGELGCLDEGMR 283



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 98/209 (46%), Gaps = 5/209 (2%)

Query: 79  QNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +  QV     I+ C  N    +A+ L+  M ++ + P+++TL  V+ A          + 
Sbjct: 325 RRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARW 384

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +H YS++  L  +VYV   L+ +YA CG +     LF+  +    +R +++W  +I  Y 
Sbjct: 385 IHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSAR----ERHVITWNAMIHGYG 440

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
              +   A+  F +M    + P+    + VLSACS  G +  G +    + ++ + L P 
Sbjct: 441 SHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKED-YGLEPG 499

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +  +  ++D+  + G +  A     +MP+
Sbjct: 500 MEHYGTMVDLLGRAGKLDEAWAFIQKMPM 528


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 218/659 (33%), Positives = 334/659 (50%), Gaps = 72/659 (10%)

Query: 11  SRYNDINTFQQLSLL-------------HQSPRLESS----KSVGQLKQFHAFIIKTGSP 53
           SR N ++ F+ +SL+             H    L SS    KS+ + +Q H  II  G  
Sbjct: 147 SRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFE 206

Query: 54  QHQTQILYDKIISLSRGNEI--------ENLSLQNPQVYLYNFIIQC-LSNANPLEAIAL 104
           QH   IL  K+++      +        EN ++ +P  + +N +I   + N    +A++ 
Sbjct: 207 QHP--ILVPKLVTFYSAFNLLVDAHVITENSNILHP--FPWNLLISSYVRNGFCQKALSA 262

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           Y++M+ KG+ P+ +T P VLKAC +   L  G++VH     + +  ++ V N L+ +Y  
Sbjct: 263 YKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGK 322

Query: 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP---- 220
           CG +     LF        +RD VSW ++I  Y  M    EA   F  M   ++      
Sbjct: 323 CGKVGIARDLFD----KIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIII 378

Query: 221 -------------------------------DGMILVIVLSACSKLGDLSLGIKIHRYIT 249
                                          D + L+I L ACS +GD  LG +IH +  
Sbjct: 379 WNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAI 438

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
            + F     V   N+LI MY +C ++  A  +F  M  K+++SWNS+I+G  H  + +EA
Sbjct: 439 RSCFGEVDTV--KNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEA 496

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI-GNALVD 368
             + R M   G++P+  T+  VL  CA +  L+ GK  H Y+ +     D  +  NALVD
Sbjct: 497 SFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVD 556

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           MYA+ G++ +A  VF  +  RD  +YT+MI G  + G+   AL +F EM+   I+PD +T
Sbjct: 557 MYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHIT 616

Query: 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
            + VLSACSH+GLV +G   F  M  +Y L P  EH+ CM DLFGRAGL+ +A ++I++M
Sbjct: 617 MIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNM 676

Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548
           P  P   +W  L+GAC+IH   E+ E   E L+  +PE  G Y+L+ N+Y++   W +  
Sbjct: 677 PYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLA 736

Query: 549 KLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K+R  M++  V+K PGC+ V+V   F  F   D S+    EIY LL+ +    K  GYI
Sbjct: 737 KVRXFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVIKEAGYI 795


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 177/488 (36%), Positives = 294/488 (60%), Gaps = 10/488 (2%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           +L + + +C    S+     +HA  +K+   S+ ++ + L+ +Y   G  +   +LF   
Sbjct: 67  SLVFAISSC---TSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD-- 121

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGD 237
                 +DLVSW +L+       Y    + +F  M  ++  +P+ + L+ V+SAC+ +G 
Sbjct: 122 --EMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGA 179

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L  G  +H  +      +S    + N+LI+MY K G + +A ++F+EMPV+++VSWNSM+
Sbjct: 180 LDEGKSLHGVVVK--LGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMV 237

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
               H G  ++ +D+F  M+  G+ PD  T+V +L +C + G     + +H Y+ +   N
Sbjct: 238 VIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN 297

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            D  I  AL+++YAK GR++ +  +F  +K RD  ++TAM+ G A+H    +A+ +F  M
Sbjct: 298 ADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLM 357

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
            + G+E D VTF  +LSACSH+GLVEEG K+F  MS VY ++P+ +HY CMVDL GR+G 
Sbjct: 358 VKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGR 417

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
           + +A +LIKSMP+ P + VWGALLGAC+++  VEL + V E L+  +P     YI+++NI
Sbjct: 418 LEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNI 477

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           YS+   W++A K+R  MKER++ + PGCS +E   + + F  GD+ HP++ EI+  L+E+
Sbjct: 478 YSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEEL 537

Query: 598 MHQSKNHG 605
           + + +  G
Sbjct: 538 IRKIREAG 545



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 173/367 (47%), Gaps = 21/367 (5%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS----LSRGNEIENL--SLQNPQVY 84
           + S  SV      HA +IK  S  +    + D+++S    L    + + L   + N  + 
Sbjct: 72  ISSCTSVSYCSAIHARVIK--SLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLV 129

Query: 85  LYNFIIQCLSNANPLEAI--ALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
            +N ++  LS    L A   A  R     G  PN  TL  V+ AC    +L  G+ +H  
Sbjct: 130 SWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGV 189

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +K  +     V N+L+ +Y   G + A  +LF         R LVSW +++  +    Y
Sbjct: 190 VVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF----EEMPVRSLVSWNSMVVIHNHNGY 245

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             + +  F  M +A + PD   +V +L AC+  G       IH YI    FN   D+ I 
Sbjct: 246 AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN--ADIIIA 303

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
            AL+++Y K G + ++  +F+E+  ++ ++W +M+AG       +EA+ +F  M   G++
Sbjct: 304 TALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVE 363

Query: 323 PDDFTLVCVLNSCANIGWLELGK---WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            D  T   +L++C++ G +E GK    + + + +     D +  + +VD+  + GR++ A
Sbjct: 364 VDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY--SCMVDLLGRSGRLEDA 421

Query: 380 FGVFRSM 386
           + + +SM
Sbjct: 422 YELIKSM 428


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/522 (35%), Positives = 291/522 (55%), Gaps = 10/522 (1%)

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N ++ C + N+   EAI  + EML  G  P+   +  +  A      L  G++ HAY++
Sbjct: 335 WNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAI 394

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K  L +++ V NTLM +Y  CG I+   K+F         RD +SWTT++  + +    +
Sbjct: 395 KQRLHTDLQVGNTLMDMYIKCGSIECSAKVFE----SMGIRDHISWTTILACFAQSSRHS 450

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EA+    ++ +  +  D M++  +L  C  L  +SL  ++H Y   N      D+ + N 
Sbjct: 451 EALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL---LDLILENR 507

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LID+Y +CG    +  +F  +  K++VSW SMI   T+ G+   A+ +F  MQ   ++PD
Sbjct: 508 LIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPD 567

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
              LV +L + A +  L  GK VH +L + +   +G + ++LVDMY+ CG ++ A  VF 
Sbjct: 568 SVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFE 627

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
             KC+DV  +TAMI    +HG   +A+D+F  M Q G+ PD V+F+ +L ACSH+ LVEE
Sbjct: 628 RAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEE 687

Query: 445 GCKHFLD-MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           G KH+LD M   Y L+P  EHY C+VD+ GR+G   EA + IK+MP+ P + VW ALLGA
Sbjct: 688 G-KHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGA 746

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C++H    LA +    L+  EP+  G YIL++N+++   +W  A + R +M ER ++K P
Sbjct: 747 CRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNP 806

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
            CS +E+    + F  GD  H  +  I+  L EI    +  G
Sbjct: 807 ACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREG 848



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 139/495 (28%), Positives = 233/495 (47%), Gaps = 41/495 (8%)

Query: 41  KQFHAFIIKTGS-PQHQTQILYDKIISL----SRGNEIENLSLQNP--QVYLYNFIIQC- 92
           +Q HA  + TGS  +     L  K++ +     R ++   L    P   V+ +N ++   
Sbjct: 77  RQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAY 136

Query: 93  LSNANPLEAIALY---REMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           LS+ +  EA+ +Y   R     G  P+  TL  VLKAC      R G +VH  ++K  L 
Sbjct: 137 LSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLD 196

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
            +  V N L+ +YA CGL+ +  ++F + Q  Q  RD+ SW +++   V+     EA+  
Sbjct: 197 KSTLVANALIGMYAKCGLLDSALRVFEWLQ--QDARDVASWNSVVSGCVQNGRTLEALAL 254

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F  M  A    +    V VL  C++LG LSLG ++H  +      L+      NAL+ MY
Sbjct: 255 FRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQC---NALLVMY 311

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            K G + SA +VF ++  K+ +SWNSM++       + EA+D F  M   G +PD   +V
Sbjct: 312 AKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVV 371

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            + ++  ++  L  G+  H Y  K  ++TD  +GN L+DMY KCG I+ +  VF SM  R
Sbjct: 372 SLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIR 431

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------H 438
           D  S+T ++   A   +  +AL++  E+ + GI  D +    +L  C            H
Sbjct: 432 DHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVH 491

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
              +  G    +  +R             ++D++G  G    +L+L + +    D   W 
Sbjct: 492 CYAIRNGLLDLILENR-------------LIDIYGECGEFDHSLNLFQRVE-KKDIVSWT 537

Query: 499 ALLGACKIHAKVELA 513
           +++  C  + ++  A
Sbjct: 538 SMINCCTNNGRLNGA 552



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 193/402 (48%), Gaps = 24/402 (5%)

Query: 136 GQQVHAYSMKTALLS---NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           G+QVHA+++ T  L+   + ++   L+ +Y  CG +    +LF+        R + SW  
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFN----GMPARTVFSWNA 131

Query: 193 LIQAYVKMDYPTEAILSFFDM---CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           L+ AY+      EA+  +  M         PDG  L  VL AC   GD   G ++H    
Sbjct: 132 LVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAV 191

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD--EMPVKNVVSWNSMIAGLTHRGQFK 307
                L     + NALI MY KCG + SA +VF+  +   ++V SWNS+++G    G+  
Sbjct: 192 K--VGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTL 249

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK--NHINTDGFIGNA 365
           EAL +FR MQ  G   + +T V VL  CA +G L LG+ +H  L K  + +N      NA
Sbjct: 250 EALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQ---CNA 306

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           L+ MYAK GR+D A  VF  +  +D  S+ +M+     +    +A+D F EM Q G +PD
Sbjct: 307 LLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPD 366

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
               V + SA  H   +  G + F   +    L    +    ++D++ + G I  +  + 
Sbjct: 367 HACVVSLSSALGHLSRLNNG-REFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVF 425

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           +SM  + D   W  +L AC   A+       +E ++  + EG
Sbjct: 426 ESMG-IRDHISWTTIL-AC--FAQSSRHSEALEMILELQKEG 463


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/497 (37%), Positives = 291/497 (58%), Gaps = 6/497 (1%)

Query: 111 KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170
           +G  P++ TL  VL AC  +++L   ++ HA+++++ L   V V   ++  Y  CG I+A
Sbjct: 155 EGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRA 214

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
              +F +       ++ VSW  +I  Y +     EA+  F  M +  +    + ++  L 
Sbjct: 215 ARVVFDW----MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQ 270

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           AC +LG L  G+++H  +      L  +V + NALI MY KC  +  A  VFDE+  +  
Sbjct: 271 ACGELGCLDEGMRVHELLV--RIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ 328

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           VSWN+MI G    G  ++A+ +F RMQ   +KPD FTLV V+ + A+I      +W+H Y
Sbjct: 329 VSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGY 388

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
             + H++ D ++  AL+DMYAKCGR++ A  +F S + R V ++ AMI G   HG    A
Sbjct: 389 SIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAA 448

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           +++F EM  +GI P+E TF+ VLSACSHAGLV+EG ++F  M   Y L+P  EHYG MVD
Sbjct: 449 VELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVD 508

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           L GRAG + EA   I+ MP+ P   V+GA+LGACK+H  VELAE   + +    P+    
Sbjct: 509 LLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVY 568

Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
           ++L+ NIY++ + WK+  ++R  M++  ++KTPG S++++  E + F  G  +H +  EI
Sbjct: 569 HVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEI 628

Query: 591 YKLLDEIMHQSKNHGYI 607
           Y  L +++ + K  GY+
Sbjct: 629 YSRLAKLIEEIKAVGYV 645



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 144/509 (28%), Positives = 227/509 (44%), Gaps = 52/509 (10%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+A +  M   G  P   T   +LK C     L  G+ VHA      + S       L  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLR 219
           +YA C       ++F   + P   RD V+W  L+  Y +      A+     M  +   R
Sbjct: 103 MYAKCRRPADARRVFD--RMP--VRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGER 158

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + LV VL AC+    L+   + H +   +   L   V +  A++D Y KCG+I +AR
Sbjct: 159 PDSITLVSVLPACANARALAACREAHAFAIRS--GLEELVNVATAILDAYCKCGDIRAAR 216

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            VFD MP KN VSWN+MI G    G  +EAL +F RM   G+   D +++  L +C  +G
Sbjct: 217 VVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELG 276

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ G  VH  L +  ++++  + NAL+ MY+KC R+D A  VF  +  R   S+ AMI+
Sbjct: 277 CLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMIL 336

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH--------------------- 438
           G A +G +  A+ +F+ M    ++PD  T V V+ A +                      
Sbjct: 337 GCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQ 396

Query: 439 -----AGLVEEGCK-HFLDMSRVYNLQPQTEH---YGCMVDLFGRAGLIREALDL---IK 486
                  L++   K   ++++R+     +  H   +  M+  +G  G  + A++L   +K
Sbjct: 397 DVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMK 456

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAE---IVMENLVRFEPEGDGAYILMTNIYSSKNR 543
           S+ +VP+   + ++L AC     V+        M+     EP G   Y  M ++     +
Sbjct: 457 SIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEP-GMEHYGTMVDLLGRAGK 515

Query: 544 WKEALKLRKKMKERKVKKTPGCSLVEVYG 572
             EA    +KM        PG S   VYG
Sbjct: 516 LDEAWAFIQKM-----PMDPGLS---VYG 536



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 166/327 (50%), Gaps = 12/327 (3%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N +  EA+AL+  M+ +G+     ++   L+AC +   L  G +VH   ++  L SNV V
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N L+ +Y+ C  +     +F        +R  VSW  +I    +     +A+  F  M 
Sbjct: 300 MNALITMYSKCKRVDLASHVF----DELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
             N++PD   LV V+ A + + D      IH Y    H  L  DV++  ALIDMY KCG 
Sbjct: 356 LENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLH--LDQDVYVLTALIDMYAKCGR 413

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  AR +F+    ++V++WN+MI G    G  K A+++F  M+ +G+ P++ T + VL++
Sbjct: 414 VNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSA 473

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           C++ G ++ G+   T + +++    G      +VD+  + G++D+A+   + M      S
Sbjct: 474 CSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLS 533

Query: 394 -YTAMIVGLAIHGKAWKALDIFSEMSQ 419
            Y AM+    +H    K +++  E +Q
Sbjct: 534 VYGAMLGACKLH----KNVELAEESAQ 556



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 4/248 (1%)

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           D P  A+ +F  M  A   P       +L  C+  GDL+ G  +H  +      +  +  
Sbjct: 39  DLPA-ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAAR--GIDSEAL 95

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL- 319
              AL +MY KC     AR+VFD MPV++ V+WN+++AG    G  + A+++  RMQ   
Sbjct: 96  AATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEE 155

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G +PD  TLV VL +CAN   L   +  H +  ++ +     +  A++D Y KCG I  A
Sbjct: 156 GERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAA 215

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             VF  M  ++  S+ AMI G A +G + +AL +F+ M + G++  +V+ +  L AC   
Sbjct: 216 RVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGEL 275

Query: 440 GLVEEGCK 447
           G ++EG +
Sbjct: 276 GCLDEGMR 283



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 98/209 (46%), Gaps = 5/209 (2%)

Query: 79  QNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +  QV     I+ C  N    +A+ L+  M ++ + P+++TL  V+ A          + 
Sbjct: 325 RRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARW 384

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +H YS++  L  +VYV   L+ +YA CG +     LF+  +    +R +++W  +I  Y 
Sbjct: 385 IHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSAR----ERHVITWNAMIHGYG 440

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
              +   A+  F +M    + P+    + VLSACS  G +  G +    + ++ + L P 
Sbjct: 441 SHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKED-YGLEPG 499

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +  +  ++D+  + G +  A     +MP+
Sbjct: 500 MEHYGTMVDLLGRAGKLDEAWAFIQKMPM 528


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/554 (34%), Positives = 316/554 (57%), Gaps = 43/554 (7%)

Query: 81  PQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           P +Y++N +I     +N  +A  +YR ML  G  P+  T  Y+L+    ++ +   +Q+H
Sbjct: 30  PNLYIFNTMILGFPFSNE-KAFTIYRSMLQNGTYPDRQTFLYLLQT---TKFVAEVKQIH 85

Query: 141 AYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
            +++   LLS   Y+ N+L++ Y   G  +   +LF       + R++VS+ T+I  + K
Sbjct: 86  CHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFD----EMSDRNVVSYNTMILGFAK 141

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
           +      +  F DM    L PD   ++ +L  C +LG+  LG  +H  I  +    S ++
Sbjct: 142 VGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIG--SSNL 199

Query: 260 FIHNALIDMYLKCGNIPSARKVFD-------------------------------EMPVK 288
            ++NAL+DMY+KC  +  ARKVFD                               ++P +
Sbjct: 200 ILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTR 259

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           ++VSWNS+I+G    G +     +F RM    +KPD  T+V ++++ A +G L+ G+W+H
Sbjct: 260 DIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIH 319

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
               K     + F G+AL+DMY KCG I++AF +F  +  +DV ++T MI G A HG   
Sbjct: 320 GLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGN 379

Query: 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCM 468
           KAL++FS M Q   +P++VTFV VL+ACSH+GLV+EG K F  M + Y+++P  EHYGC+
Sbjct: 380 KALELFSVM-QAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCL 438

Query: 469 VDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
           VDL  R+G + +A+ +I+ MP+ P   +WGA+L AC++H  +ELAE  +  L++ EPE +
Sbjct: 439 VDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKE 498

Query: 529 GAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTL 588
           G YIL++N+Y++  RW  +  +R+ M  R VKK  GCS V V G  ++F   +K HP+ +
Sbjct: 499 GGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWM 558

Query: 589 EIYKLLDEIMHQSK 602
           +I  +L  + ++ +
Sbjct: 559 DICSILSFLTNEMR 572


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 219/606 (36%), Positives = 320/606 (52%), Gaps = 19/606 (3%)

Query: 15  DINTFQQLSLLHQSPRLESSKSVG--QLKQFHAFIIKTGSPQHQTQI------LYDKIIS 66
           D++    + LL   P    ++ VG  + ++ H  +I TG       I      +Y K  S
Sbjct: 25  DVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGS 84

Query: 67  LSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKA 126
           ++    +    ++   V   + I     N   +EA+  Y+ M    +LP ++TL   L +
Sbjct: 85  IADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHEILPGSFTLISSLSS 144

Query: 127 CWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRD 186
           C   +  ++GQQ+H  S+K  +  NV V N LM LYA  G +    K+F        + D
Sbjct: 145 CASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFS----SMPEHD 200

Query: 187 LVSWTTLIQAYVKMDYP-TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
            VSW ++I A    +    EA+  F +  +A  + + +    VLSA S L    LG +IH
Sbjct: 201 QVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIH 260

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRG 304
                  +N++ +    NALI  Y KCG +    K+F  M  + + V+WNSMI+G  H  
Sbjct: 261 GLAL--KYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNE 318

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
              +ALD+   M   G + D F    VL++ A++  LE G  VH    +  + +D  +G+
Sbjct: 319 LLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGS 378

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IE 423
           ALVDMY+KCGR+D A   F +M  R+ YS+ +MI G A HG+  +AL +F+ M   G   
Sbjct: 379 ALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTP 438

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           PD VTFVGVLSACSHAGL+EEG KHF  MS  Y L P+ EH+ CM DL GRAG + +  D
Sbjct: 439 PDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLED 498

Query: 484 LIKSMPLVPDAFVWGALLGAC--KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
            I  MP+ P+  +W  +LGAC      K EL +   E L + EPE    Y+L+ N+Y++ 
Sbjct: 499 FIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAG 558

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQS 601
            RW++ +K RKKMK+  VKK  G S V +    + F  GDKSHP T  IYK L E+  + 
Sbjct: 559 GRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVIYKKLKELNRKM 618

Query: 602 KNHGYI 607
           ++ GY+
Sbjct: 619 RDAGYV 624



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 158/310 (50%), Gaps = 9/310 (2%)

Query: 198 VKMDYPTEAILSFFDM-CQANLRPDGMILVIV----LSACSKLGDLSLGIKIHRYITDNH 252
           V+  +  EA   F DM    ++ P+  ++++      S   ++G L  G ++H ++    
Sbjct: 5   VRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEQVG-LKKGREVHGHVITTG 63

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
             +   V I N L++MY KCG+I  AR+VF  M  K+ VSWNSMI GL   G F EA++ 
Sbjct: 64  L-VDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVER 122

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           ++ M+   + P  FTL+  L+SCA++ W +LG+ +H    K  I+ +  + NAL+ +YA+
Sbjct: 123 YQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAE 182

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW-KALDIFSEMSQVGIEPDEVTFVG 431
            G +++   +F SM   D  S+ ++I  LA   ++  +A+  F    + G + + +TF  
Sbjct: 183 TGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSS 242

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           VLSA S     E G K    ++  YN+  +      ++  +G+ G +     +   M   
Sbjct: 243 VLSAVSSLSFGELG-KQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSER 301

Query: 492 PDAFVWGALL 501
            D   W +++
Sbjct: 302 RDDVTWNSMI 311


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 201/583 (34%), Positives = 314/583 (53%), Gaps = 22/583 (3%)

Query: 41  KQFHAFIIKT---GSPQHQTQI--LYDKIISLSRGNEIENL-SLQNPQVYLYNFIIQC-L 93
           K+ H  ++K    GSP   T +  +Y K   +     + N  +  N  V+ YN +I   L
Sbjct: 49  KELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTHHNKNVFAYNALIAGFL 108

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
           +NA P  A+ALY +M   G+ P+ +T P V++AC       V  ++H    K  L  +V+
Sbjct: 109 ANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLELDVF 168

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V + L+  Y     +   +++F   + P   RD+V W  ++  + ++    EA+  F  M
Sbjct: 169 VGSALVNTYLKFRFVGEAYRVF--EELPV--RDVVLWNAMVNGFAQIGRFEEALGVFRRM 224

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
               + P    +  VLS  S +GD   G  +H ++T         V + NALIDMY KC 
Sbjct: 225 GGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTK--MGYESGVVVSNALIDMYGKCK 282

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVL 332
            +  A  VF+ M   ++ SWNS+++     G     L +F RM G   ++PD  T+  VL
Sbjct: 283 CVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVL 342

Query: 333 NSCANIGWLELGKWVHTYL--------DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
            +C ++  L  G+ +H Y+        + + +  D  + NAL+DMYAKCG +  A  VF 
Sbjct: 343 PACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFV 402

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
           +M+ +DV S+  MI G  +HG   +ALDIFS M Q  + P+E++FVG+LSACSHAG+V+E
Sbjct: 403 NMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKE 462

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G     +M   Y + P  EHY C++D+  RAG + EA DL+ +MP   D   W +LL AC
Sbjct: 463 GLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAAC 522

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           ++H   +LAE+    ++  EP+  G Y+LM+N+Y    R++E L+ R  MK++ VKK PG
Sbjct: 523 RLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPG 582

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           CS +E+    + F  GD++HP+T  IY  L+ +    + HGY+
Sbjct: 583 CSWIELVNGVHVFITGDRTHPQTEYIYAGLNSLTAVLQEHGYV 625



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 201/424 (47%), Gaps = 46/424 (10%)

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           L++C  + +L  G+++H + +K A   +     +L+ +Y+ C LI    ++F+F  H   
Sbjct: 36  LQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTH--H 93

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
            +++ ++  LI  ++    P  A+  +  M    + PD      V+ AC    D  +  K
Sbjct: 94  NKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTK 153

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303
           IH  +      L  DVF+ +AL++ YLK   +  A +VF+E+PV++VV WN+M+ G    
Sbjct: 154 IHGLMFK--VGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQI 211

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
           G+F+EAL +FRRM G G+ P  +T+  VL+  + +G  + G+ VH ++ K    +   + 
Sbjct: 212 GRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVS 271

Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE-MSQVGI 422
           NAL+DMY KC  +  A  VF  M   D++S+ +++      G  +  L +F   M    +
Sbjct: 272 NALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRV 331

Query: 423 EPDEVTFVGVLSACSH----------------AGLVEE--------------------GC 446
           +PD VT   VL AC+H                 GL +E                     C
Sbjct: 332 QPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKC 391

Query: 447 KHFLDMSRVY-NLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALL 501
            +  D   V+ N++ +    +  M+  +G  G   EALD+   M    +VP+   +  LL
Sbjct: 392 GNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLL 451

Query: 502 GACK 505
            AC 
Sbjct: 452 SACS 455



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 141/279 (50%), Gaps = 8/279 (2%)

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
           +  L +C+   +LS G ++H ++  N F  SP      +LI+MY KC  I  + +VF+  
Sbjct: 33  IATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAI--TSLINMYSKCSLIDHSLRVFN-F 89

Query: 286 PV---KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
           P    KNV ++N++IAG       + AL ++ +M+ LG+ PD FT  CV+ +C +     
Sbjct: 90  PTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGF 149

Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
           +   +H  + K  +  D F+G+ALV+ Y K   + +A+ VF  +  RDV  + AM+ G A
Sbjct: 150 VVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFA 209

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
             G+  +AL +F  M   G+ P   T  GVLS  S  G  + G +           +   
Sbjct: 210 QIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNG-RAVHGFVTKMGYESGV 268

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
                ++D++G+   + +AL + + M  + D F W +++
Sbjct: 269 VVSNALIDMYGKCKCVGDALSVFEMMDEI-DIFSWNSIM 306



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 22/186 (11%)

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR-- 384
           T +  L SCA+   L  GK +HT+L KN          +L++MY+KC  ID +  VF   
Sbjct: 31  TCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFP 90

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
           +   ++V++Y A+I G   +    +AL ++++M  +GI PD+ TF  V+ AC   G  ++
Sbjct: 91  THHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRAC---GDDDD 147

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR---------EALDLIKSMPLVPDAF 495
           G      +++++ L  +    G  +D+F  + L+          EA  + + +P V D  
Sbjct: 148 G----FVVTKIHGLMFKV---GLELDVFVGSALVNTYLKFRFVGEAYRVFEELP-VRDVV 199

Query: 496 VWGALL 501
           +W A++
Sbjct: 200 LWNAMV 205


>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
 gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
          Length = 568

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/391 (45%), Positives = 245/391 (62%), Gaps = 5/391 (1%)

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD      +L AC++L  L  G +IH     N   L+  VF+ N+L+ +Y  CG   SA 
Sbjct: 116 PDTHTYPPLLQACARLLSLRHGERIHAEAAKN--GLATLVFVKNSLVHLYGACGLFESAH 173

Query: 280 KVFDEMPV--KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           +VFDE+PV  +N+VSWNSM+ G    G+  E L IFR M  +   PD FT+V VL + A 
Sbjct: 174 RVFDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAE 233

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTA 396
           IG L LG+ VH YL K  +  +  +GNAL+D+YAKCG ++ A  VF  M  R  V S+T+
Sbjct: 234 IGALALGRRVHVYLTKVGLVENSHVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTS 293

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +IVGLA++G   +AL++F  M +  + P E+T VGVL ACSH GLV++G  +F  M   Y
Sbjct: 294 LIVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVLYACSHCGLVDDGFMYFNRMKEEY 353

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
           N+ P+ EH GCMVDL GRAG ++EA D I +MPL P+A VW  LLGAC +H K+EL E  
Sbjct: 354 NIAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLEPNAVVWRTLLGACAMHKKLELGEAA 413

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
              LV  +P   G Y+L++N+Y++  RW +   LRK M +  V+K PG SLVE+    YE
Sbjct: 414 WARLVELDPGHSGDYVLLSNLYAAVGRWADVHVLRKTMVKDGVRKNPGRSLVELRNSVYE 473

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           F  GD+SHP++ +IY++L E+    +  GYI
Sbjct: 474 FVMGDRSHPESEQIYQMLAEVADSLRREGYI 504



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 148/526 (28%), Positives = 250/526 (47%), Gaps = 68/526 (12%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSR--------GNEIENLSLQNPQVY 84
           ++ S+  +KQ HA  ++ G P     +    +  L+            +    L +P  +
Sbjct: 28  AAPSLATVKQLHARALRAGVPPAHPLLAKHLLFHLASLRAPPLRYAVAVLTRVLPDPDPF 87

Query: 85  LYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
             N +++   S++ P  A+AL+   L     P+T+T P +L+AC +  SLR G+++HA +
Sbjct: 88  SLNTVLRIAASSSRPSLALALHARRLAP---PDTHTYPPLLQACARLLSLRHGERIHAEA 144

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
            K  L + V+V N+L+ LY  CGL ++ H++F   + P  +R+LVSW +++  +     P
Sbjct: 145 AKNGLATLVFVKNSLVHLYGACGLFESAHRVFD--EIPVGERNLVSWNSMLNGFAANGRP 202

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            E +  F +M   N  PDG  +V VL+A +++G L+LG ++H Y+T     L  +  + N
Sbjct: 203 NEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGRRVHVYLTK--VGLVENSHVGN 260

Query: 264 ALIDMYLKCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           ALID+Y KCG +  AR+VF+EM   + VVSW S+I GL   G  KEAL++F  M+   L 
Sbjct: 261 ALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNGFGKEALELFGIMEREKLV 320

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P + T+V VL +C++                                   CG +D  F  
Sbjct: 321 PTEITMVGVLYACSH-----------------------------------CGLVDDGFMY 345

Query: 383 FRSMKCRDVYSYTAMIVGLA----IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           F  MK  + Y+    I  L     + G+A K  + +  +  + +EP+ V +  +L AC+ 
Sbjct: 346 FNRMK--EEYNIAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLEPNAVVWRTLLGACAM 403

Query: 439 AGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
              +E G   +   +R+  L P  +  Y  + +L+   G   +   L K+M  V D    
Sbjct: 404 HKKLELGEAAW---ARLVELDPGHSGDYVLLSNLYAAVGRWADVHVLRKTM--VKDGVRK 458

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543
               G   +  +  + E VM +  R  PE +  Y ++  +  S  R
Sbjct: 459 NP--GRSLVELRNSVYEFVMGD--RSHPESEQIYQMLAEVADSLRR 500


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 171/420 (40%), Positives = 255/420 (60%), Gaps = 33/420 (7%)

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC------- 272
           PD      V+ AC++LG  +LG ++H       F     +   NALIDMY KC       
Sbjct: 93  PDEFTFPFVVKACARLGLHNLGKQVHAQFF--KFGKKSHLITENALIDMYTKCDNLLDAH 150

Query: 273 ------------------------GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
                                   G +  AR +FDEMP + +VSW ++I+G T  G + +
Sbjct: 151 NLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYID 210

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           ALD+FR MQ  G++PD+ +++ VL +CA +G LE GKW+H +  +N +     I NAL++
Sbjct: 211 ALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIE 270

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           MY KCG IDQA  +F  M+ RDV S++ MI GLA HGK  +A+ IF  M Q  I+P+ +T
Sbjct: 271 MYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGIT 330

Query: 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
           FVG+LSAC+HAG  EEG  +F  M + ++++P+ EHYG +VDL GRAG + +ALD+++ M
Sbjct: 331 FVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKM 390

Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548
           P+ PD+ +WG+LL +C+ H  +E+A I ME+L   EP+  G Y+L++NIY+   +W +  
Sbjct: 391 PMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVS 450

Query: 549 KLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
           ++RK ++ +++KKTPGCSL+EV     EF  GD S P + EI+ LL+ +        +IL
Sbjct: 451 RMRKLVRSKRMKKTPGCSLIEVNNVAQEFVSGDDSKPYSKEIFWLLELLAFHQDMDKHIL 510



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/443 (30%), Positives = 218/443 (49%), Gaps = 51/443 (11%)

Query: 37  VGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS------LQNPQVYLYNFII 90
           + +LK+ HA +IK    Q  +  L  K+I +   NE  + +      + +P  YLYN +I
Sbjct: 1   MAELKKNHALVIKYALSQ--SNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMI 58

Query: 91  Q-CLSNANPLEAIALYREMLIKG---------LLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           + C  N+     I  Y++ML +          +LP+ +T P+V+KAC +     +G+QVH
Sbjct: 59  RACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVH 118

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF-----------------HFR--QHP 181
           A   K    S++   N L+ +Y  C  +   H LF                 H R  Q  
Sbjct: 119 AQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMR 178

Query: 182 QAQ--------RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
           +A+        R +VSWT +I  Y ++    +A+  F +M  A + PD   ++ VL AC+
Sbjct: 179 RARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACA 238

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
           KLG L  G  IH +   N   L     I NALI+MY KCG I  A ++FD+M  ++V+SW
Sbjct: 239 KLGALETGKWIHMFCARN--GLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISW 296

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           ++MI GL + G+ +EA+ IF RM+   +KP+  T V +L++CA+ G+ E G      + K
Sbjct: 297 STMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKK 356

Query: 354 N-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKAL 411
           + HI  +     +LVD+  + GR+ QA  +   M  + D   + +++     H     A+
Sbjct: 357 DFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAV 416

Query: 412 DIFSEMSQVGIEPDEVTFVGVLS 434
                + +  +EPD+     +LS
Sbjct: 417 IAMEHLEE--LEPDDTGNYVLLS 437


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 183/478 (38%), Positives = 273/478 (57%), Gaps = 10/478 (2%)

Query: 134 RVG--QQVHAYSMKTALLSNVYVFNTLMRLYAVC--GLIKAVHKLFHFRQHPQAQRDLVS 189
           RVG  + + A+ ++  L  + ++ + L+   AV   G +   H++F    HP    +L  
Sbjct: 19  RVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHP----NLFM 74

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W T+I+ Y   D P  AI  + DM    + P+      VL AC KL  L  G ++H  I 
Sbjct: 75  WNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIV 134

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
                L  +  + N LI +Y  CG +  A  +FDEMP  +  SW++M++G    GQ  EA
Sbjct: 135 K--VGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEA 192

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           L +FR MQ   +  D FTL  V+  C ++G L+LGKWVH+Y+DK  +  D  +G ALV M
Sbjct: 193 LKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGM 252

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           Y+KCG +D A  VF+ M  RDV +++ MI G AIHG   KAL +F  M +    P+ VTF
Sbjct: 253 YSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTF 312

Query: 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
             VLSACSH+GLVE+G + F  M   Y + PQ +HYGCMVDLF RAG++  A   I++MP
Sbjct: 313 TSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMP 372

Query: 490 LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549
           + P+  +W  LLGACK H   +L E +   +++ +P     Y+L++N+Y+S  RW    +
Sbjct: 373 IEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQ 432

Query: 550 LRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +R  MK++  KK  G S +E+    ++F  GD+SHP+  +IY +L ++  + K  G++
Sbjct: 433 VRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHV 490



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 184/359 (51%), Gaps = 16/359 (4%)

Query: 37  VGQLKQFHAFIIKTGSPQHQ---TQILYDKIISLS----RGNEIENLSLQNPQVYLYNFI 89
           VG LK   A +++    Q     ++++    ++LS      + I + +  +P ++++N I
Sbjct: 20  VGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCT-HHPNLFMWNTI 78

Query: 90  IQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I+  S + +P+ AIALYR+M + G+ PN+YT  +VLKAC +   L  GQ++H+  +K  L
Sbjct: 79  IRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGL 138

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
                + N L++LYA CG +     +F     P    D  SW+T++  Y +     EA+ 
Sbjct: 139 DFETPLVNGLIKLYAACGCMDYACVMFDEMPEP----DSASWSTMVSGYAQNGQAVEALK 194

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F +M   N+  D   L  V+  C  LG L LG  +H Y+      +  DV +  AL+ M
Sbjct: 195 LFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKI--DVVLGTALVGM 252

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KCG++ +A KVF  M  ++V +W++MIAG    G  ++AL +F  M+     P+  T 
Sbjct: 253 YSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTF 312

Query: 329 VCVLNSCANIGWLELGKWV-HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
             VL++C++ G +E G  +  T   +  I         +VD++ + G +  A    ++M
Sbjct: 313 TSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTM 371


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 202/616 (32%), Positives = 325/616 (52%), Gaps = 69/616 (11%)

Query: 56  QTQILYDKIISLS----RGNEIENLSLQN-------------PQVYLYNFIIQCLSNAN- 97
            +++L+ K+I       RGN + NL  ++             PQ  ++++ +     A  
Sbjct: 306 NSEVLHAKLIKNGCVGIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARI 365

Query: 98  --PLEAIALYREMLIKGLLPNTYTLPYVLKACWQS-QSLRVGQQVHAYSMKTALLSNVYV 154
               + + L+ +M  +G+ PN +TL  VLK+C  +    R+G+ +H + ++  L  +  +
Sbjct: 366 GLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVL 425

Query: 155 FNTLMRLYAVCGLIKAVHKLFH-----------------------------FRQHPQAQR 185
            N+++  Y  C       KLF                              FRQ P   +
Sbjct: 426 NNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPG--K 483

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           D  SW T+I   ++      A+   + M  A    + +   I L   S L  L LG +IH
Sbjct: 484 DAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIH 543

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---------------VKNV 290
             +      +  D F+ N+LIDMY KCG +  A  +F  +P               V   
Sbjct: 544 TQVLK--VGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVES 601

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           VSW+SM++G    G+F++AL  F  M    ++ D FTL  V+++CA+ G LELG+ VH Y
Sbjct: 602 VSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGY 661

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           + K     D F+G++++DMY KCG ++ A+ +F   K R+V  +T+MI G A+HG+  +A
Sbjct: 662 IQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREA 721

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           + +F  M   GI P+EV+FVGVL+ACSHAGL+EEGCK+F  M  VY ++P  EH+ CMVD
Sbjct: 722 VRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVD 781

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           L+GRAG + E  + I +  +   + VW + L +C++H  +E+   V + L+  EP   G 
Sbjct: 782 LYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGP 841

Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
           YIL ++I ++++RW+EA K+R  M++R VKK P  S +++  + + F  GD+SHP+  +I
Sbjct: 842 YILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKI 901

Query: 591 YKLLDEIMHQSKNHGY 606
           Y  LDE++ + K  GY
Sbjct: 902 YSYLDELIGRLKEIGY 917


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 180/521 (34%), Positives = 298/521 (57%), Gaps = 6/521 (1%)

Query: 88  FIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
            I   + N   LEA+ L+R+M  +GL+P++  +  +L AC + +++++G  +   ++++ 
Sbjct: 204 LICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSG 263

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
             S++YV N ++ +Y  CG     H++F    +     D+VSW+TLI  Y +     E+ 
Sbjct: 264 FESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVY----SDVVSWSTLIAGYSQNCLYQESY 319

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             +  M    L  + ++   VL A  KL  L  G ++H ++      L  DV + +ALI 
Sbjct: 320 KLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKE--GLMSDVVVGSALIV 377

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY  CG+I  A  +F+    K+++ WNSMI G    G F+ A   FRR+ G   +P+  T
Sbjct: 378 MYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFIT 437

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           +V +L  C  +G L  GK +H Y+ K+ +  +  +GN+L+DMY+KCG ++    VF+ M 
Sbjct: 438 VVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMM 497

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            R+V +Y  MI     HG+  K L  + +M + G  P++VTF+ +LSACSHAGL++ G  
Sbjct: 498 VRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWL 557

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
            +  M   Y ++P  EHY CMVDL GRAG +  A   I  MP+ PDA V+G+LLGAC++H
Sbjct: 558 LYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGACRLH 617

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
            KVEL E++ E +++ + +  G Y+L++N+Y+S  RW++  K+R  +K++ ++K PG S 
Sbjct: 618 NKVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGLEKKPGSSW 677

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
           ++V    Y F      HP   +I + L+ ++   K+  Y+L
Sbjct: 678 IQVGHCIYVFHATSAFHPAFAKIEETLNSLLLVMKSEDYML 718



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/412 (29%), Positives = 207/412 (50%), Gaps = 9/412 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI  Y  ML  G+ P+ YT P VLKAC    +L++G+ VH  +M     +NVYV   ++
Sbjct: 116 KAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHE-TMHGKTKANVYVQCAVI 174

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            ++A CG ++   ++  F + P   RDL SWT LI   +      EA+L F  M    L 
Sbjct: 175 DMFAKCGSVEDARRM--FEEMP--DRDLASWTALICGTMWNGECLEALLLFRKMRSEGLM 230

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +I+  +L AC +L  + LG+ +      + F    D+++ NA+IDMY KCG+   A 
Sbjct: 231 PDSVIVASILPACGRLEAVKLGMALQVCAVRSGFE--SDLYVSNAVIDMYCKCGDPLEAH 288

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +VF  M   +VVSW+++IAG +    ++E+  ++  M  +GL  +      VL +   + 
Sbjct: 289 RVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLE 348

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ GK +H ++ K  + +D  +G+AL+ MYA CG I +A  +F     +D+  + +MIV
Sbjct: 349 LLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIV 408

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G  + G    A   F  +      P+ +T V +L  C+  G + +G K          L 
Sbjct: 409 GYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQG-KEIHGYVTKSGLG 467

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
                   ++D++ + G +     + K M +V +   +  ++ AC  H + E
Sbjct: 468 LNVSVGNSLIDMYSKCGFLELGEKVFKQM-MVRNVTTYNTMISACGSHGQGE 518



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 167/330 (50%), Gaps = 7/330 (2%)

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
           H    FR  P   + +++W  +++  V + + T+AI  +  M Q  + PD     +VL A
Sbjct: 85  HAFLTFRALPH--KPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKA 142

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           CS L  L LG  +H  +   H     +V++  A+IDM+ KCG++  AR++F+EMP +++ 
Sbjct: 143 CSSLHALQLGRWVHETM---HGKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLA 199

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           SW ++I G    G+  EAL +FR+M+  GL PD   +  +L +C  +  ++LG  +    
Sbjct: 200 SWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCA 259

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            ++   +D ++ NA++DMY KCG   +A  VF  M   DV S++ +I G + +    ++ 
Sbjct: 260 VRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESY 319

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
            ++  M  VG+  + +    VL A     L+++G K   +      L         ++ +
Sbjct: 320 KLYIGMINVGLATNAIVATSVLPALGKLELLKQG-KEMHNFVLKEGLMSDVVVGSALIVM 378

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           +   G I+EA  + +      D  VW +++
Sbjct: 379 YANCGSIKEAESIFECTS-DKDIMVWNSMI 407


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 185/496 (37%), Positives = 288/496 (58%), Gaps = 51/496 (10%)

Query: 78  LQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +  P  +++N +I+  + + +PL AI+LY +M    + P+ +T P+VLKAC +   +++G
Sbjct: 38  ITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMG 97

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
             VH    +    SN +V NTL+  +A CG +     LF       A+RD+V+W+ L   
Sbjct: 98  FGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFD----GSAKRDVVAWSALTAG 153

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y                                   ++ G+L +  ++        F+  
Sbjct: 154 Y-----------------------------------ARRGELGVARQL--------FDEM 170

Query: 257 P--DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           P  D+   N +I  Y K G + SARK+FDE+P ++VV+WN+MIAG    G  ++AL++F 
Sbjct: 171 PVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFE 230

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKC 373
            M+ +G  PD+ T++ +L++C ++G L+ G+ +H  + +    +    +GNAL+DMYAKC
Sbjct: 231 EMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKC 290

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G I +A  VF+ M+ +DV ++ +++ GLA HG A K++ +F+EM ++ I PDE+TFVGVL
Sbjct: 291 GSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVL 350

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
            ACSHAG VEEG ++F  M   YN++P   HYGCMVDL GRAGL+ EA D I +M + P+
Sbjct: 351 VACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPN 410

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
           A VW  LLGAC+IH  VEL       L++   +  G Y+L++NIY+S+  W    K+RK 
Sbjct: 411 AIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKL 470

Query: 554 MKERKVKKTPGCSLVE 569
           M +  V+K  GCSL+E
Sbjct: 471 MDDSGVRKEAGCSLIE 486



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 110/235 (46%), Gaps = 12/235 (5%)

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G +  A ++F  +   +   WN+MI G         A+ ++ +M+   ++PD FT   VL
Sbjct: 26  GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 85

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +C  + W+++G  VH  + +    ++ F+ N L+  +A CG +  A  +F     RDV 
Sbjct: 86  KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 145

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           +++A+  G A  G+   A  +F EM       D V++  +++  +  G +E   K F ++
Sbjct: 146 AWSALTAGYARRGELGVARQLFDEMPV----KDLVSWNVMITGYAKRGEMESARKLFDEV 201

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV---PDAFVWGALLGAC 504
            +          +  M+  +   G  ++AL++ + M  V   PD     +LL AC
Sbjct: 202 PK-----RDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSAC 251


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 310/563 (55%), Gaps = 33/563 (5%)

Query: 72  EIENLSLQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQS 130
           +I   +   P    +  II+C ++   L  ++A +  +   G+ P+ +  P +L+A    
Sbjct: 30  QIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLF 89

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ------ 184
           +   + Q +HA  ++     ++Y  N LM +Y+     K    L    + PQA+      
Sbjct: 90  KHFNLAQSLHAAVIRLGFHFDLYTANALMNMYS-----KFHPHLSPLHEFPQARHNHNNK 144

Query: 185 -----------------RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
                            RD+VSW T+I    +     EA+    +M + NLRPD   L  
Sbjct: 145 YSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSS 204

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +L   ++  +++ G +IH Y   + F+   DVFI ++LIDMY KC  +  +   F  +  
Sbjct: 205 ILPIFTEHANVTKGKEIHGYAIRHGFD--KDVFIGSSLIDMYAKCTQVELSVCAFHLLSN 262

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           ++ +SWNS+IAG    G+F + L  FRRM    +KP   +   V+ +CA++  L LGK +
Sbjct: 263 RDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQL 322

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHG 405
           H Y+ +   + + FI ++L+DMYAKCG I  A  +F  ++   RD+ S+TA+I+G A+HG
Sbjct: 323 HAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHG 382

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
            A  A+ +F EM   G++P  V F+ VL+ACSHAGLV+EG K+F  M R + + P  EHY
Sbjct: 383 HALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHY 442

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
             + DL GRAG + EA D I +M   P   VW  LL AC+ H  +ELAE V+  ++  +P
Sbjct: 443 AAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDP 502

Query: 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585
              GA+++M+NIYS+  RW++A KLR +M++  +KKTP CS +EV  + + F  GDKSHP
Sbjct: 503 GNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHP 562

Query: 586 KTLEIYKLLDEIMHQSKNHGYIL 608
              +I + L+ ++ Q +  GY+L
Sbjct: 563 YYDKINEALNILLEQMEKEGYVL 585


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 200/525 (38%), Positives = 304/525 (57%), Gaps = 14/525 (2%)

Query: 80  NPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           NP     N + Q        EA+ LYR ML     PNT+T P++LK+C          Q+
Sbjct: 17  NPTTAWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQL 76

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           HA+ ++T    + Y  ++L+  YA C L     K+F    +P      + +  +I  Y  
Sbjct: 77  HAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPT-----ICYNAMISGYSF 131

Query: 200 MDYPTEAILSFFDM-------CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
              P  A+  F  M          ++  + + L+ ++S CS    L++G+ +H       
Sbjct: 132 NSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCV--R 189

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           F    D+ + N+L+ MY+KCG +  ARKVFDEM V+++++WN+MI+G    G  +  L++
Sbjct: 190 FGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEV 249

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           +  M+  G+  D  TL+ V+++CAN+G   +G+ V   +++     + F+ NALV+MYA+
Sbjct: 250 YSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYAR 309

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           CG + +A  VF     + V S+TA+I G  IHG    AL++F EM +  + PD+  FV V
Sbjct: 310 CGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSV 369

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           LSACSHAGL + G ++F +M R Y LQP  EHY C+VDL GRAG + EA++LIKSM + P
Sbjct: 370 LSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKP 429

Query: 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552
           D  VWGALLGACKIH   E+AE+  +++V  EP   G Y+L++NIY+  N  +   ++R 
Sbjct: 430 DGAVWGALLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRV 489

Query: 553 KMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
            M+ERK++K PG S VE  G+   F  GD SHP+T +IY++LDE+
Sbjct: 490 MMRERKLRKDPGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDEL 534



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 207/408 (50%), Gaps = 25/408 (6%)

Query: 42  QFHAFIIKTGS---PQHQTQIL--YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS-N 95
           Q HA +I+TGS   P  ++ ++  Y K        ++ +  + NP +  YN +I   S N
Sbjct: 75  QLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFD-EMPNPTI-CYNAMISGYSFN 132

Query: 96  ANPLEAIALYREM-------LIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           + PL A+ L+R+M       L   +  N  TL  ++  C  +  L +G  +H   ++   
Sbjct: 133 SKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGF 192

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
           ++++ V N+L+ +Y  CG ++   K+F         RDL++W  +I  Y +  +    + 
Sbjct: 193 VTDLAVANSLVTMYVKCGEVELARKVF----DEMLVRDLITWNAMISGYAQNGHARCVLE 248

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            + +M  + +  D + L+ V+SAC+ LG   +G ++ R I    F  +P  F+ NAL++M
Sbjct: 249 VYSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNP--FLRNALVNM 306

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y +CGN+  AR+VFD    K+VVSW ++I G    G  + AL++F  M    ++PD    
Sbjct: 307 YARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVF 366

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSMK 387
           V VL++C++ G  + G      +++ +    G    + +VD+  + GR+++A  + +SMK
Sbjct: 367 VSVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMK 426

Query: 388 CR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            + D   + A++    IH  A  A   F  +  V +EP  + +  +LS
Sbjct: 427 VKPDGAVWGALLGACKIHKNAEIAELAFQHV--VELEPTNIGYYVLLS 472



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 188/420 (44%), Gaps = 51/420 (12%)

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
           P       +W   ++   K     EA+  +  M +++  P+      +L +C+ L     
Sbjct: 13  PPRWNPTTAWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLA 72

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
             ++H ++        PD +  ++LI+ Y KC     ARKVFDEMP    + +N+MI+G 
Sbjct: 73  ASQLHAHVIRT--GSQPDPYTRSSLINTYAKCSLHHHARKVFDEMP-NPTICYNAMISGY 129

Query: 301 THRGQFKEALDIFRRMQ-------GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           +   +   A+ +FR+M+        + +  +  TL+ +++ C+    L +G  +H    +
Sbjct: 130 SFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVR 189

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
               TD  + N+LV MY KCG ++ A  VF  M  RD+ ++ AMI G A +G A   L++
Sbjct: 190 FGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEV 249

Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAG-------------LVEEGCKHFLDMSRVYNLQP 460
           +SEM   G+  D VT +GV+SAC++ G                 GC  FL  + V N+  
Sbjct: 250 YSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALV-NMYA 308

Query: 461 QTEHYGCMVDLFGRAG------------------LIREALDLIKSM---PLVPDAFVWGA 499
           +  +     ++F R+G                      AL+L   M    + PD  V+ +
Sbjct: 309 RCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVS 368

Query: 500 LLGACKIHAKVELAEI----VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           +L AC  HA +    +     ME     +P G   Y  + ++     R +EA+ L K MK
Sbjct: 369 VLSACS-HAGLTDRGLEYFKEMERKYGLQP-GPEHYSCVVDLLGRAGRLEEAVNLIKSMK 426


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 195/567 (34%), Positives = 309/567 (54%), Gaps = 60/567 (10%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           AI ++REM+   + P  +TL  VL +C   + L +G++VH++ +K  L S + V N+L+ 
Sbjct: 129 AIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLN 188

Query: 161 LYAVCGLIKAVHKLFH-------------FRQHPQA--------------QRDLVSWTTL 193
           +YA  G       +F                 H Q+              +RD+VSW  +
Sbjct: 189 MYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAM 248

Query: 194 IQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           I  Y +  +  EA+  F  M   ++ +PD   L   LSAC+ L +L LG +IH +I    
Sbjct: 249 ISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTE 308

Query: 253 FNL-------------------------------SPDVFIHNALIDMYLKCGNIPSARKV 281
           F+                                + DV    AL+D Y+K G+I  AR++
Sbjct: 309 FDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRI 368

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           FD + V++VV+W +MI G    G  ++A+++FR M   G KP+++TL  +L+  +++  L
Sbjct: 369 FDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASL 428

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-RDVYSYTAMIVG 400
           + G+ +H    ++   +   + NAL+ MYAK G I+ A  VF  +   RD  ++T+MI+ 
Sbjct: 429 DHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIA 488

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
           LA HG   +AL +F  M + GI+PD +T+VGVLSAC+H GLVE+G  ++  M   + + P
Sbjct: 489 LAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIP 548

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
              HY CM+DLFGRAGL++EA   I++MP+ PD   WG+LL +CK+H  VELAE+  E L
Sbjct: 549 TPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERL 608

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
           +  EPE  GAY  + N+YS+  +W+ A  +RK MK++ VKK  G S V++  + + F   
Sbjct: 609 LLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVD 668

Query: 581 DKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           D  HP+   IY+++ +I  + K  G++
Sbjct: 669 DGLHPQRDAIYEMMAKIWKEIKKMGFV 695



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 212/482 (43%), Gaps = 99/482 (20%)

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH------------------ 176
            G+ +HA  +K  L   V++ N LM  YA  G I   H++F                   
Sbjct: 31  TGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYA 90

Query: 177 -----------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
                      F + P+   D VSWT +I  Y +M     AI  F +M   ++ P    L
Sbjct: 91  KGGRLEEAHRVFEEMPEP--DSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTL 148

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
             VL++C+ +  L +G K+H ++  +   LS  + + N+L++MY K G+  +A+ VFD M
Sbjct: 149 TNVLASCAAVECLGIGRKVHSFVVKH--GLSSYISVANSLLNMYAKSGDPVTAKIVFDRM 206

Query: 286 PVK-------------------------------NVVSWNSMIAGLTHRGQFKEALDIFR 314
            +K                               +VVSWN+MI+G    G  +EALDIF 
Sbjct: 207 KLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFS 266

Query: 315 RM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
           +M      KPD FTL   L++CAN+  L+LGK +H ++ +   +T G +GNAL+ MY+K 
Sbjct: 267 KMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKS 326

Query: 374 ---------------------------------GRIDQAFGVFRSMKCRDVYSYTAMIVG 400
                                            G I+ A  +F S++ RDV ++TAMIVG
Sbjct: 327 GGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVG 386

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
              +G    A+++F  M + G +P+  T   +LS  S    ++ G +     +R  N   
Sbjct: 387 YVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASS 446

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
            +     ++ ++ ++G I +A  +   +    D   W +++ A   H   E A  + E +
Sbjct: 447 VSVS-NALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERM 505

Query: 521 VR 522
           + 
Sbjct: 506 LE 507



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 165/339 (48%), Gaps = 37/339 (10%)

Query: 100 EAIALYREMLI-KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           EA+ ++ +ML+     P+ +TL   L AC   ++L++G+Q+HA+ ++T   +   V N L
Sbjct: 260 EALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNAL 319

Query: 159 MRLYAVCGLIKAVHKLFHFRQ----------------------HPQAQ-------RDLVS 189
           + +Y+  G ++   K+                           +P  +       RD+V+
Sbjct: 320 ISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVA 379

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           WT +I  YV+  +  +A+  F  M +   +P+   L  +LS  S L  L  G +IH   T
Sbjct: 380 WTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASAT 439

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKE 308
            +    +  V + NALI MY K G+I  AR VF+ +  K + ++W SMI  L   G  +E
Sbjct: 440 RS--GNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEE 497

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH--INTDGFIGNAL 366
           AL +F RM   G+KPD  T V VL++C ++G +E G+  +  +   H  I T       +
Sbjct: 498 ALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYA-CM 556

Query: 367 VDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIH 404
           +D++ + G + +A     +M    DV ++ +++    +H
Sbjct: 557 IDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVH 595



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 120/268 (44%), Gaps = 65/268 (24%)

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
           K  D   G  IH  I     +L   VF+ N L++ Y K G I  A +VFDEMPVK+V SW
Sbjct: 25  KFKDPFTGKSIHARIIKAGLHLG--VFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSW 82

Query: 294 N-------------------------------SMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           N                               +MI G    GQF+ A+ +FR M    + 
Sbjct: 83  NIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVP 142

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P  FTL  VL SCA +  L +G+ VH+++ K+ +++   + N+L++MYAK G    A  V
Sbjct: 143 PTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIV 202

Query: 383 FRSMKC-------------------------------RDVYSYTAMIVGLAIHGKAWKAL 411
           F  MK                                RDV S+ AMI G   HG   +AL
Sbjct: 203 FDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREAL 262

Query: 412 DIFSEM-SQVGIEPDEVTFVGVLSACSH 438
           DIFS+M      +PD+ T    LSAC++
Sbjct: 263 DIFSKMLMDSSSKPDKFTLASALSACAN 290



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 144/307 (46%), Gaps = 47/307 (15%)

Query: 89  IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I+  + N    +A+ L+R M+ +G  PN YTL  +L       SL  G+Q+HA + ++  
Sbjct: 384 IVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGN 443

Query: 149 LSNVYVFNTLMRLYAVCGLI---KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
            S+V V N L+ +YA  G I   + V  L H++      RD ++WT++I A  +     E
Sbjct: 444 ASSVSVSNALITMYAKSGSINDARWVFNLIHWK------RDTITWTSMIIALAQHGLGEE 497

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           A+  F  M +  ++PD +  V VLSAC+ +G +  G   +  + + H  + P    +  +
Sbjct: 498 ALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAH-KIIPTPSHYACM 556

Query: 266 IDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           ID++ + G +  A    + MP++ +V++W S++A          +  + + ++   +  +
Sbjct: 557 IDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLA----------SCKVHKNVELAEVAAE 606

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
              L+   NS A                           +AL ++Y+ CG+ + A  + +
Sbjct: 607 RLLLIEPENSGAY--------------------------SALANVYSACGQWENAANIRK 640

Query: 385 SMKCRDV 391
           SMK + V
Sbjct: 641 SMKDKGV 647


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 204/625 (32%), Positives = 328/625 (52%), Gaps = 30/625 (4%)

Query: 1   MASPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQL---KQFHAFIIKTG-----S 52
           + + + + + + +ND NT      L  S  L+ S   G L   KQ HA +IK G     S
Sbjct: 41  LRASMPIPNQTHFNDPNTVH----LFCSNALKISAKKGYLPEGKQLHAHLIKFGFCQVLS 96

Query: 53  PQHQTQILYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLSNANPLE-------AIAL 104
            Q+Q   +Y K        ++ E L ++N  V  +N +I+     N            + 
Sbjct: 97  LQNQILSVYLKCQEAEDAKKLFEELPVRN--VVSWNIMIRASVGRNDENESSGMRLCFSY 154

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           +R ML++ ++P+  T   ++  C Q   + +G Q+H +++K     + +V   L+ LYA 
Sbjct: 155 FRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAK 214

Query: 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI 224
           CG ++   ++F       + RDLV W  ++  YV    P EA   F  M    +  D   
Sbjct: 215 CGFVENARRVFC----DVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFT 270

Query: 225 LVIVLSACSK--LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
              +LS  S   L     G ++H  +    F+   DV + +ALI+MY K  NI  AR+VF
Sbjct: 271 FSSLLSVISDDALEYYDFGKQVHSLVLRQSFD--SDVLVASALINMYAKSENIIDARRVF 328

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
           DEM ++NVV+WN+MI G  + G   E + + + M   G  PD+ T+  +++SC     + 
Sbjct: 329 DEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAIT 388

Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
               VH +  K        + N+L+  Y+KCG I  AF  F      D+ ++T++I   A
Sbjct: 389 ETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYA 448

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
            HG A K+ ++F +M   GI+PD + F+GVLSAC+H GLV +G  +F  M+  Y + P +
Sbjct: 449 FHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQIVPDS 508

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
           EHY C+VDL GR GLI EA ++++SMP+  D+   GA +G+CK+H+ +ELA++  E L  
Sbjct: 509 EHYTCLVDLLGRYGLINEAFEILRSMPIEVDSDTLGAFIGSCKLHSNMELAKLAAEKLFL 568

Query: 523 FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDK 582
            EPE    Y +M+NI++S+  W +  ++RK M++++  K PGCS +E+  + + F   DK
Sbjct: 569 IEPEKSVNYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSWIEIGNQIHSFVSNDK 628

Query: 583 SHPKTLEIYKLLDEIMHQSKNHGYI 607
           SHP  LE+Y  L+ ++   K    I
Sbjct: 629 SHPNALEMYVTLNMLLRPMKEQNGI 653


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 198/580 (34%), Positives = 315/580 (54%), Gaps = 17/580 (2%)

Query: 37  VGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS------LQNPQVYLYNFII 90
           VG  +Q HA  +K  S +    I+ + ++++   N + +        +++  +  +  II
Sbjct: 168 VGTGRQVHAHALK--SERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSII 225

Query: 91  QCLSNAN-PLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
              +     +EA+ ++REM+++G   PN +      +AC    S   G+Q+H  S+K  L
Sbjct: 226 AGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRL 285

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             ++YV  +L  +YA C  + +    F+  + P    DLVSW +++ AY      +EA++
Sbjct: 286 DRDLYVGCSLSDMYARCKNLDSARVAFYRIEAP----DLVSWNSIVNAYSVEGLLSEALV 341

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F +M  + LRPDG+ +  +L AC     L  G  IH Y+      L  DV + N+L+ M
Sbjct: 342 LFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVK--LGLDGDVSVCNSLLSM 399

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y +C ++ SA  VF E+  ++VV+WNS++         +E L +F  +       D  +L
Sbjct: 400 YARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISL 459

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM-K 387
             VL++ A +G+ E+ K VH Y  K  +  D  + N L+D YAKCG +D A  +F  M  
Sbjct: 460 NNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGN 519

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            RDV+S++++IVG A  G A +A D+FS M  +GI P+ VTF+GVL+ACS  G V EGC 
Sbjct: 520 NRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCY 579

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           ++  M   Y + P  EH  C+VDL  RAG + EA + I  MP  PD  +W  LL A K+H
Sbjct: 580 YYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMH 639

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
             +E+ +   E ++  +P    AY+L+ NIY++   W E  +L+K M+   VKK+PG S 
Sbjct: 640 NDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSW 699

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           V++ GE   F   D+SHP++ EIY +L+ I  +    GY+
Sbjct: 700 VKLKGELKVFIVEDRSHPESEEIYAMLELIGMEMIKAGYV 739



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 230/481 (47%), Gaps = 22/481 (4%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQTQI------------LYDKIISLSRGNEI-ENLSLQNP 81
           +S+ Q ++ H  ++ + S     Q+            +Y +  +     ++ + +  +NP
Sbjct: 58  RSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVFDEMPARNP 117

Query: 82  QVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
            V   + I   + N    +A+ L+  ML  G   + + L   ++AC +   +  G+QVHA
Sbjct: 118 -VSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHA 176

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           +++K+   S++ V N L+ +Y+  GL+     LF   +     +DL+SW ++I  + +  
Sbjct: 177 HALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIK----DKDLISWGSIIAGFAQQG 232

Query: 202 YPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           +  EA+  F +M  + +  P+         AC  +G    G +IH       + L  D++
Sbjct: 233 FEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSI--KYRLDRDLY 290

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           +  +L DMY +C N+ SAR  F  +   ++VSWNS++   +  G   EAL +F  M+  G
Sbjct: 291 VGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSG 350

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           L+PD  T+  +L +C     L  G+ +H+YL K  ++ D  + N+L+ MYA+C  +  A 
Sbjct: 351 LRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAM 410

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  +K +DV ++ +++   A H    + L +FS +++     D ++   VLSA +  G
Sbjct: 411 DVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELG 470

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
             E   K     +    L         ++D + + G + +A+ L + M    D F W +L
Sbjct: 471 YFEM-VKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSL 529

Query: 501 L 501
           +
Sbjct: 530 I 530



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 177/374 (47%), Gaps = 44/374 (11%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPD------VFIHNALIDMYLKCGNIPSARKV 281
           ++SACS+L  L  G ++HR++  +  + SPD        + N LI MY +C    SAR+V
Sbjct: 50  LVSACSRLRSLPQGRRVHRHLVASSSS-SPDAQLAGNTVLGNHLITMYGRCAAPDSARQV 108

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           FDEMP +N VSW S+IA     G+  +AL +F  M   G   D F L   + +C  +G +
Sbjct: 109 FDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDV 168

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
             G+ VH +  K+   +D  + NALV MY+K G +D  F +F  +K +D+ S+ ++I G 
Sbjct: 169 GTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGF 228

Query: 402 AIHGKAWKALDIFSEMSQVGI-EPDEVTFVGVLSACSHAGLVEEG--------------- 445
           A  G   +AL +F EM   G   P+E  F     AC   G  E G               
Sbjct: 229 AQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRD 288

Query: 446 -------------CKHFLDMSRV--YNLQ-PQTEHYGCMVDLFGRAGLIREALDLIKSM- 488
                        CK+ LD +RV  Y ++ P    +  +V+ +   GL+ EAL L   M 
Sbjct: 289 LYVGCSLSDMYARCKN-LDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMR 347

Query: 489 --PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI-LMTNIYSSKNRWK 545
              L PD      LL AC     +    ++   LV+   +GD +    + ++Y+  +   
Sbjct: 348 DSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLS 407

Query: 546 EALKLRKKMKERKV 559
            A+ +  ++K++ V
Sbjct: 408 SAMDVFHEIKDQDV 421


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 190/547 (34%), Positives = 301/547 (55%), Gaps = 8/547 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYN-FIIQCLSNANPLEAIALYREMLIKGLLPNTY 118
           +Y K  ++S   ++ +L L +  +  YN  II    N    +A  L+ ++       +  
Sbjct: 302 MYAKCDNMSDAYKLFSL-LPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEV 360

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           +L   L A    +    G Q+H  ++K+ L SN+ V N ++ +Y  CG +     LF   
Sbjct: 361 SLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFD-- 418

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                 RD VSW  +I A  + +   + +  F  M ++ + PD      VL AC+     
Sbjct: 419 --EMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAF 476

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
           S G+++H  I  +   L   +F+ +AL+DMY KCG +  A K+   +  + +VSWN++I+
Sbjct: 477 SNGMEVHGRIIKSGMGLK--MFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIIS 534

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G + + + +++   F  M  +G++PD+FT   VL++CAN+  + LGK +H  + K  + +
Sbjct: 535 GFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLS 594

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           D +I + LVDMY+KCG +  +  +FR    RD  ++ AMI G A HG   +AL++F  M 
Sbjct: 595 DVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHML 654

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
              I+P+  TFV VL ACSH G  ++G  +F  M+ +Y L+PQ EHY CMVD+ GR+G +
Sbjct: 655 HENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQV 714

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            EAL LI+ MP   DA +W  LL  CKI   VE+AE    +L++ +PE   AY L++NIY
Sbjct: 715 EEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIY 774

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           +    W++  K+R+ M+   +KK PGCS +EV  E + F   DK+HPK   IY LLD ++
Sbjct: 775 ADAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHTFLVCDKAHPKCEMIYSLLDLLI 834

Query: 599 HQSKNHG 605
              +  G
Sbjct: 835 CDMRRSG 841



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 195/417 (46%), Gaps = 36/417 (8%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-- 176
           T  ++ + C   ++L+ G++ HA+ + +     V+V N L+++Y  C  ++  +K+F   
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 177 ---------------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
                                      F   P    D+VSW +LI  Y++     ++I  
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPH-HGDVVSWNSLISGYLQNGDIQKSIAV 144

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F  M    +  D   L + L  CS L D  LGI+IH       F+   DV   +AL+DMY
Sbjct: 145 FLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDY--DVVTGSALVDMY 202

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            KC ++  +  VF E+P KN +SW++ IAG     Q    L +F+ MQ  G+     T  
Sbjct: 203 AKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYA 262

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            V  SCA +    LG  +H +  K    +D  +G A +DMYAKC  +  A+ +F  +   
Sbjct: 263 SVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDH 322

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-H 448
           ++ SY AMI+G A + + ++A  +F ++ +     DEV+  G LSA +      EG + H
Sbjct: 323 NLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLH 382

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505
            L +    NL         ++D++G+ G + EA  L   M  + D   W A++ AC+
Sbjct: 383 GLAIKS--NLSSNICVANAILDMYGKCGALVEASGLFDEME-IRDPVSWNAIITACE 436



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 124/500 (24%), Positives = 226/500 (45%), Gaps = 42/500 (8%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           L N +  ++IA++ +M   G++ +  TL   LK C   +   +G Q+H  +++     +V
Sbjct: 133 LQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDV 192

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
              + L+ +YA C  ++    L  F + P   ++ +SW+  I   V+ D     +  F +
Sbjct: 193 VTGSALVDMYAKCNSLE--DSLDVFSELPD--KNWISWSAAIAGCVQNDQLLRGLKLFKE 248

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +  +         V  +C+ L    LG ++H +     F    DV +  A +DMY KC
Sbjct: 249 MQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFG--SDVIVGTATLDMYAKC 306

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
            N+  A K+F  +P  N+ S+N+MI G     Q  +A  +F ++Q      D+ +L   L
Sbjct: 307 DNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGAL 366

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           ++ A I     G  +H    K++++++  + NA++DMY KCG + +A G+F  M+ RD  
Sbjct: 367 SAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPV 426

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGL 441
           S+ A+I     +    K L  F  M +  +EPDE T+  VL AC+           H  +
Sbjct: 427 SWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRI 486

Query: 442 VEEG-----------------CKHFLDMSRV-YNLQPQTE-HYGCMVDLFG---RAGLIR 479
           ++ G                 C    +  ++ Y L+ QT   +  ++  F    ++   +
Sbjct: 487 IKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQ 546

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT--NI 537
                +  M + PD F +  +L  C   A V L + +   +++ E   D  YI  T  ++
Sbjct: 547 RFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSD-VYITSTLVDM 605

Query: 538 YSSKNRWKEALKLRKKMKER 557
           YS      ++L + +K  +R
Sbjct: 606 YSKCGNMHDSLLMFRKAPKR 625


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 179/504 (35%), Positives = 289/504 (57%), Gaps = 8/504 (1%)

Query: 99  LEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           LEA+  +REML + +  PN +       AC +      G+Q+H   +K  L S+++   +
Sbjct: 282 LEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCS 341

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L  +YA CG +++   +F+  + P    DLV+W  +I  +  +    E+   F  M    
Sbjct: 342 LCDMYAKCGFLESARTVFYHIEKP----DLVAWNAIIAGFASVSNAKESSSFFSQMRHTG 397

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           L P+ + ++ +L ACS+   L+ GI++H YI    FNL  D+ + N+L+ MY KC N+  
Sbjct: 398 LVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNL--DIPVCNSLLSMYSKCSNLND 455

Query: 278 ARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
           A +VF+++  K ++VSWN+++     + Q  E L + + M    +KPD  TL  VL S  
Sbjct: 456 ALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSG 515

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            I   E+G  +H ++ K+ +N D  + NAL++MY KCG ++ A  +F S+   D+ S+++
Sbjct: 516 QIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSS 575

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +IVG A  G   +A ++F  M  +G++P+E+TFVG+L+ACSH G+VEEG K +  M   Y
Sbjct: 576 LIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDY 635

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            + P  EH  CMVDL  RAG +  A D I+ MP VPD  VW  LL ACK+H  +E+ +  
Sbjct: 636 RISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRA 695

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            EN+++ +P    A +++ NI++S   WK+  +LR  M+   V K PG S +E+  + + 
Sbjct: 696 AENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHV 755

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQ 600
           F   D  HP+  +IY +L+E+M Q
Sbjct: 756 FLAEDNLHPERGKIYTMLEELMLQ 779



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/484 (25%), Positives = 232/484 (47%), Gaps = 36/484 (7%)

Query: 62  DKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLP 121
           DKIISL + N      L    +  ++   +C  +++PL+++              TYT  
Sbjct: 67  DKIISLCKKN------LHREALKAFDIFQKC--SSSPLKSV--------------TYT-- 102

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           +++ AC   +SL  G+++H + +      ++ + N ++ +Y  CG +K    +F      
Sbjct: 103 HLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFD----S 158

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
              +++VSWT++I  Y +      AI  +  M ++   PD      ++ +CS L D  L 
Sbjct: 159 MPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLA 218

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            ++H ++  + F    D+   NALI MY K   +  A  VF  + +K+++SW SMIAG +
Sbjct: 219 RQLHAHVLKSEFG--ADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFS 276

Query: 302 HRGQFKEALDIFRRMQGLGL-KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
             G   EAL  FR M    + +P++F      ++C+ +   + G+ +H    K  + +D 
Sbjct: 277 QLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDL 336

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
           F G +L DMYAKCG ++ A  VF  ++  D+ ++ A+I G A    A ++   FS+M   
Sbjct: 337 FAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHT 396

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
           G+ P++VT + +L ACS   ++  G + H   +   +NL         ++ ++ +   + 
Sbjct: 397 GLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPV--CNSLLSMYSKCSNLN 454

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           +AL + + +    D   W  LL AC    + +  E++    + F       ++ +TN+  
Sbjct: 455 DALQVFEDIGNKADIVSWNTLLTACL--QQNQAGEVLRLTKLMFASRIKPDHVTLTNVLV 512

Query: 540 SKNR 543
           S  +
Sbjct: 513 SSGQ 516



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 201/381 (52%), Gaps = 16/381 (4%)

Query: 78  LQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           ++ P +  +N II   ++ +N  E+ + + +M   GL+PN  T+  +L AC +   L  G
Sbjct: 362 IEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHG 421

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            QVH+Y +K     ++ V N+L+ +Y+ C  +    ++F   +    + D+VSW TL+ A
Sbjct: 422 IQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVF---EDIGNKADIVSWNTLLTA 478

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            ++ +   E +     M  + ++PD + L  VL +  ++    +G +IH +I  +  NL 
Sbjct: 479 CLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNL- 537

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D+ + NALI+MY KCG++  ARK+FD +   +++SW+S+I G    G  KEA ++FR M
Sbjct: 538 -DISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTM 596

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           +GLG+KP++ T V +L +C++IG +E G K   T  +   I+      + +VD+ A+ G 
Sbjct: 597 RGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGC 656

Query: 376 IDQAFGVFRSMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           +D A    R M    DV  +  ++    +HG     L++    ++  ++ D      V+ 
Sbjct: 657 LDVAEDFIRQMPFVPDVVVWKTLLAACKVHGN----LEVGKRAAENVLKIDPSNSAAVVM 712

Query: 435 ACSHAGLVEEGCKHFLDMSRV 455
            C+    +     H+ D +R+
Sbjct: 713 LCN----IHASSGHWKDFARL 729



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 145/301 (48%), Gaps = 16/301 (5%)

Query: 42  QFHAFIIKTGS----PQHQTQI-LYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLSN 95
           Q H++I+K G     P   + + +Y K  +L+   ++ E++  +   V     +  CL  
Sbjct: 423 QVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQ 482

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
               E + L + M    + P+  TL  VL +  Q  S  VG Q+H + MK+ L  ++ V 
Sbjct: 483 NQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVS 542

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ +Y  CG ++   K+F    +P    D++SW++LI  Y +     EA   F  M  
Sbjct: 543 NALINMYTKCGSLECARKMFDSIGNP----DIISWSSLIVGYAQAGCGKEAFELFRTMRG 598

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             ++P+ +  V +L+ACS +G +  G+K++R + ++ + +SP     + ++D+  + G +
Sbjct: 599 LGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQED-YRISPTKEHCSCMVDLLARAGCL 657

Query: 276 PSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
             A     +MP V +VV W +++A     G     L++ +R     LK D      V+  
Sbjct: 658 DVAEDFIRQMPFVPDVVVWKTLLAACKVHGN----LEVGKRAAENVLKIDPSNSAAVVML 713

Query: 335 C 335
           C
Sbjct: 714 C 714



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 125/259 (48%), Gaps = 15/259 (5%)

Query: 253 FN-LSPDVFIHNALIDMYLKCGNIP-SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
           FN  SP   I N    ++L   +I  + +  F   P+      +  I  L  +   +EAL
Sbjct: 23  FNPFSPTSSIKNFKPQLHLALSHIRLNTQLAFSPCPLTVHYPHDDKIISLCKKNLHREAL 82

Query: 311 ---DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
              DIF++     LK   +T +  +N+C+++  LE G+ +H ++   +   D  + N ++
Sbjct: 83  KAFDIFQKCSSSPLKSVTYTHL--INACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHIL 140

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
            MY KCG + +A  +F SM  ++V S+T+MI G + +G+   A+ ++ +M + G  PD  
Sbjct: 141 SMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHF 200

Query: 428 TFVGVLSACSHAG---LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           TF  ++ +CS      L  +   H L      +L  Q      ++ ++ +   + +A+++
Sbjct: 201 TFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNA----LISMYTKFSQMADAINV 256

Query: 485 IKSMPLVPDAFVWGALLGA 503
              + ++ D   WG+++  
Sbjct: 257 FSRI-IIKDLISWGSMIAG 274


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 188/571 (32%), Positives = 315/571 (55%), Gaps = 11/571 (1%)

Query: 42  QFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H   +K G     +  +    +Y K   L  G ++  L  ++  V     I  C+ N 
Sbjct: 268 QLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNG 327

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
              +A+ L+ +M   G+ P++ TL  +L A         G+++H Y ++  +  +V++ +
Sbjct: 328 FVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+ +Y  C  ++    ++   +      D+V  +T+I  YV      EA+  F  + + 
Sbjct: 388 ALVDIYFKCRAVRMAQSVYDSSK----AIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQ 443

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            +RP+ + +  VL AC+ +  + LG ++H Y   N +      ++ +AL+DMY KCG + 
Sbjct: 444 GIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYE--GRCYVESALMDMYAKCGRLD 501

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            +  +F ++  K+ V+WNSMI+     G+ +EAL++FR M   G+K  + T+  VL++CA
Sbjct: 502 LSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACA 561

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           ++  +  GK +H  + K  I  D F  +AL+DMY KCG ++ A  VF SM  ++  S+ +
Sbjct: 562 SLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNS 621

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I     +G   +++ +   M + G + D VTF+ ++SAC+HAG V+EG + F  M+  Y
Sbjct: 622 IIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEY 681

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            + P+ EH+ CMVDL+ RAG + +A++LI  MP  PDA +WGALL AC++H  VELAEI 
Sbjct: 682 QIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIA 741

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            + L + +P   G Y+LM+NI +   RW    K+R+ MK+ KV+K PG S V+V    + 
Sbjct: 742 SQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHL 801

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           F   DKSHP + +IY  L  I+ + +  GYI
Sbjct: 802 FVAADKSHPDSEDIYMSLKSILLELREEGYI 832



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/504 (28%), Positives = 252/504 (50%), Gaps = 46/504 (9%)

Query: 85  LYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           L+N ++     A  +  A+ L+ +M   G  PN  TL   L        L  G Q+H  +
Sbjct: 214 LWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLA 273

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K  L S V V NTL+ +YA C  +    KLF        + DLV+W  +I   V+  + 
Sbjct: 274 VKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGL----MPRDDLVTWNGMISGCVQNGFV 329

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            +A+L F DM ++ +RPD + LV +L A + L   + G ++H YI  N  ++  DVF+ +
Sbjct: 330 DQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHM--DVFLVS 387

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL+D+Y KC  +  A+ V+D     +VV  ++MI+G    G  +EA+ +FR +   G++P
Sbjct: 388 ALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRP 447

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           +   +  VL +CA++  ++LG+ +H+Y  KN      ++ +AL+DMYAKCGR+D +  +F
Sbjct: 448 NAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIF 507

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA---- 439
             +  +D  ++ +MI   A +G+  +AL++F EM   G++   VT   VLSAC+      
Sbjct: 508 SKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIY 567

Query: 440 ------GLVEEG------------------CKHFLDMSRVYNLQPQTEH--YGCMVDLFG 473
                 G+V +G                  C +     RV+   P+     +  ++  +G
Sbjct: 568 YGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYG 627

Query: 474 RAGLIREALDLIKSMP---LVPDAFVWGALLGAC----KIHAKVELAEIVMENLVRFEPE 526
             GL++E++ L++ M       D   + AL+ AC    ++   + L   + E   +  P 
Sbjct: 628 AYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEY-QIAPR 686

Query: 527 GDGAYILMTNIYSSKNRWKEALKL 550
            +  +  M ++YS   +  +A++L
Sbjct: 687 ME-HFACMVDLYSRAGKLDKAMEL 709



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 224/447 (50%), Gaps = 24/447 (5%)

Query: 86  YNFIIQCLSNANPLE-AIALYREMLI--KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           +N++I+ L+ A     A+  Y +M       LP+++T PYV+K+C    ++ +G+ VH  
Sbjct: 112 WNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRT 171

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
           +    L  +++V + L+++YA  GL+    ++F       A+RD V W  ++  YVK   
Sbjct: 172 ARTLGLDGDMFVGSALIKMYANGGLLWDARQVF----DGMAERDCVLWNVMMDGYVKAGS 227

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
            + A+  F DM  +   P+   L   LS  +   DL  G+++H       + L  +V + 
Sbjct: 228 VSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAV--KYGLESEVAVA 285

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           N L+ MY KC  +    K+F  MP  ++V+WN MI+G    G   +AL +F  MQ  G++
Sbjct: 286 NTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIR 345

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD  TLV +L +  ++     GK +H Y+ +N ++ D F+ +ALVD+Y KC  +  A  V
Sbjct: 346 PDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSV 405

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           + S K  DV   + MI G  ++G + +A+ +F  + + GI P+ V    VL AC+    +
Sbjct: 406 YDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAM 465

Query: 443 EEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL---IKSMPLVPDAFVWG 498
           + G + H   +   Y  +   E    ++D++ + G     LDL   I S     D   W 
Sbjct: 466 KLGQELHSYALKNAYEGRCYVE--SALMDMYAKCG----RLDLSHYIFSKISAKDEVTWN 519

Query: 499 ALLGACKIHAKVELA-----EIVMENL 520
           +++ +   + + E A     E+ ME +
Sbjct: 520 SMISSFAQNGEPEEALNLFREMCMEGV 546



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 149/316 (47%), Gaps = 6/316 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT-LMRLYAVCGLIKAVHKLFHFRQHP 181
           VL+ C     L +G QVH  ++   L +      T L+ +Y +    +    +F      
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRG 104

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ--ANLRPDGMILVIVLSACSKLGDLS 239
            A   L  W  LI+          A+L +  M    +   PD      V+ +C+ LG ++
Sbjct: 105 AAACAL-PWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA 163

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           LG  +HR  T     L  D+F+ +ALI MY   G +  AR+VFD M  ++ V WN M+ G
Sbjct: 164 LGRLVHR--TARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDG 221

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G    A+++F  M+  G +P+  TL C L+  A    L  G  +HT   K  + ++
Sbjct: 222 YVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESE 281

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             + N LV MYAKC  +D  + +F  M   D+ ++  MI G   +G   +AL +F +M +
Sbjct: 282 VAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQK 341

Query: 420 VGIEPDEVTFVGVLSA 435
            GI PD VT V +L A
Sbjct: 342 SGIRPDSVTLVSLLPA 357



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 133/301 (44%), Gaps = 13/301 (4%)

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           PD  +L  VL  C     LSLG+++H R +T      + D  +   L+ MY+       A
Sbjct: 38  PDRRLLA-VLRGCVSPSHLSLGLQVHGRAVTAGLH--ATDTALQTRLVGMYVLARRFRDA 94

Query: 279 RKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG--LGLKPDDFTLVCVLN 333
             VF  +P       + WN +I GLT  G ++ AL  + +M        PD  T   V+ 
Sbjct: 95  VAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVK 154

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           SCA +G + LG+ VH       ++ D F+G+AL+ MYA  G +  A  VF  M  RD   
Sbjct: 155 SCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVL 214

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDM 452
           +  M+ G    G    A+++F +M   G EP+  T    LS  +    +  G + H L +
Sbjct: 215 WNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAV 274

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              Y L+ +      +V ++ +   + +   L   MP   D   W  ++  C  +  V+ 
Sbjct: 275 K--YGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPR-DDLVTWNGMISGCVQNGFVDQ 331

Query: 513 A 513
           A
Sbjct: 332 A 332


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 182/490 (37%), Positives = 291/490 (59%), Gaps = 15/490 (3%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ--H 180
           ++K+C +   L    Q+HA+ ++T+L+ N ++    +   A+       +    F Q   
Sbjct: 74  LIKSCSKKTHL---LQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMK 130

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
           P   +    +  +I+AY     P +    + +M +  + P+ +    V+ +C ++  L  
Sbjct: 131 PSGSQ----YNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMG 186

Query: 241 GIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           G++IH R + D H     D  +   L+D+Y  C     A KVFDE+P  + VSWN +I+ 
Sbjct: 187 GLQIHARILRDGH---QSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISC 243

Query: 300 LTHRGQFKEALDIFRRMQGL--GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
             H  + ++AL +F  MQ    G +PDD T + +L +CAN+G LE G+ VH Y++++  +
Sbjct: 244 CIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYD 303

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
               + N+L+ MY++CGR+++A+ +F+ M  R+V S++AMI G A+HG   +A++ F +M
Sbjct: 304 GALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQM 363

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
            Q+G+ PD+ T  GVLSACSH GLV++G   F  MS+V+ ++P   HYGCMVDL GRAGL
Sbjct: 364 QQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGL 423

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
           + +A  LI SM + PD+ +W  LLGAC+IH    L E V+ +L+  + +  G Y+L+ NI
Sbjct: 424 LDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNI 483

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           YSS   W +   LRK MKE+ ++ +PGCS +E+ G+ +EF   D  HP+T EIY++LDEI
Sbjct: 484 YSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEI 543

Query: 598 MHQSKNHGYI 607
             Q K  GY+
Sbjct: 544 GKQLKIAGYV 553



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 192/367 (52%), Gaps = 18/367 (4%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQ---TQILYDKIISLSR--GNEIENLS-LQNPQVY 84
           ++S      L Q HA II+T   Q+     Q L    +S SR  G   +  S +  P   
Sbjct: 75  IKSCSKKTHLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKPSGS 134

Query: 85  LYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            YN +I+  S + +P +   LYREM  +G+ PN  +  +V+K+C +  SL  G Q+HA  
Sbjct: 135 QYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARI 194

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           ++    S+  +  TLM LY+ C   +   K+F   + PQ   D VSW  LI   +  +  
Sbjct: 195 LRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFD--EIPQW--DTVSWNVLISCCIH-NRR 249

Query: 204 TEAILSFFDMCQAN---LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           T   L  FD+ Q+      PD +  +++L AC+ LG L  G ++H YI ++ ++ + ++ 
Sbjct: 250 TRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLC 309

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
             N+LI MY +CG +  A  +F  M  +NVVSW++MI+G    G  +EA++ F +MQ LG
Sbjct: 310 --NSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLG 367

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQA 379
           + PDD TL  VL++C++ G ++ G      + K   I  +      +VD+  + G +DQA
Sbjct: 368 VSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQA 427

Query: 380 FGVFRSM 386
           + +  SM
Sbjct: 428 YQLIMSM 434


>gi|242091752|ref|XP_002436366.1| hypothetical protein SORBIDRAFT_10g001160 [Sorghum bicolor]
 gi|241914589|gb|EER87733.1| hypothetical protein SORBIDRAFT_10g001160 [Sorghum bicolor]
          Length = 523

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 189/432 (43%), Positives = 267/432 (61%), Gaps = 11/432 (2%)

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V N L+ LY  CG   A   LF     P    D+VSWT ++  + ++ +  +A+  FF M
Sbjct: 88  VRNGLIALYLACGERAAATALFD--AFPGDGPDVVSWTAMVTGHARLGFTRDAVALFFAM 145

Query: 214 CQAN--LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
              +  +  D +      +AC++  DL+L  + HR +      L  DV   NAL+DMY K
Sbjct: 146 LDLDDGVSVDAVAAAAGFAACAEARDLALSREAHRRVAAARVAL--DVVAWNALVDMYAK 203

Query: 272 CGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           CG++ +AR+ F  MPV K VVSWN+M+A L   G+  EAL +FR MQ  G++PD  T V 
Sbjct: 204 CGDVAAARQWFRRMPVAKTVVSWNTMLAALARAGEHGEALALFREMQRAGVRPDGATFVA 263

Query: 331 VLNSCANIGWLELGKWVHTYLDKN-HINTDGFI-GNALVDMYAKCGRIDQAFGVFRSMKC 388
           VL +CA +G L+ G+WVH Y+ +    + D  +  NAL+DMYAKCG +DQA  VF  M  
Sbjct: 264 VLGACAQLGALDTGRWVHAYMRRQPERDADAVVVSNALLDMYAKCGAVDQAAAVFDGMAR 323

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEGCK 447
           RDVY+Y +MI GLA HG+A +AL +F+ M + G + P+ V  +GVLSAC HAGLV+EG +
Sbjct: 324 RDVYTYASMIAGLATHGRAEEALALFAAMRRAGGVRPNGVVLLGVLSACCHAGLVDEGLR 383

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           H   M   Y + P  EHYGC VD+ GRAG + EA  L+ +MP+ PDA V G+LL AC+  
Sbjct: 384 HLGAMEDAYGVAPGVEHYGCAVDMLGRAGRLDEAEALVAAMPVPPDALVRGSLLAACRAC 443

Query: 508 AKVELAEIVMENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
             VE AE VM  +   + +G+ G ++LM+N+Y+S+ R   AL+LRK+M++ K+ K PGCS
Sbjct: 444 GDVERAERVMRWMAAVDRDGEAGDHVLMSNMYASEGRHVRALQLRKQMRKSKIVKDPGCS 503

Query: 567 LVEVYGEFYEFR 578
            +E+ G  +EFR
Sbjct: 504 SIEIDGVVHEFR 515



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 138/258 (53%), Gaps = 5/258 (1%)

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
           + L + ++ H       +  +V  +N L+ +YA CG + A  +   FR+ P A + +VSW
Sbjct: 170 RDLALSREAHRRVAAARVALDVVAWNALVDMYAKCGDVAAARQW--FRRMPVA-KTVVSW 226

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
            T++ A  +     EA+  F +M +A +RPDG   V VL AC++LG L  G  +H Y+  
Sbjct: 227 NTMLAALARAGEHGEALALFREMQRAGVRPDGATFVAVLGACAQLGALDTGRWVHAYMRR 286

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
                +  V + NAL+DMY KCG +  A  VFD M  ++V ++ SMIAGL   G+ +EAL
Sbjct: 287 QPERDADAVVVSNALLDMYAKCGAVDQAAAVFDGMARRDVYTYASMIAGLATHGRAEEAL 346

Query: 311 DIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVD 368
            +F  M +  G++P+   L+ VL++C + G ++ G + +    D   +          VD
Sbjct: 347 ALFAAMRRAGGVRPNGVVLLGVLSACCHAGLVDEGLRHLGAMEDAYGVAPGVEHYGCAVD 406

Query: 369 MYAKCGRIDQAFGVFRSM 386
           M  + GR+D+A  +  +M
Sbjct: 407 MLGRAGRLDEAEALVAAM 424



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 83  VYLYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           V  +N ++  L+ A    EA+AL+REM   G+ P+  T   VL AC Q  +L  G+ VHA
Sbjct: 223 VVSWNTMLAALARAGEHGEALALFREMQRAGVRPDGATFVAVLGACAQLGALDTGRWVHA 282

Query: 142 YSMKTAL--LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           Y  +        V V N L+ +YA CG +     +F       A+RD+ ++ ++I     
Sbjct: 283 YMRRQPERDADAVVVSNALLDMYAKCGAVDQAAAVFDG----MARRDVYTYASMIAGLAT 338

Query: 200 MDYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
                EA+  F  M +A  +RP+G++L+ VLSAC   G +  G++ H    ++ + ++P 
Sbjct: 339 HGRAEEALALFAAMRRAGGVRPNGVVLLGVLSACCHAGLVDEGLR-HLGAMEDAYGVAPG 397

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           V  +   +DM  + G +  A  +   MPV  + +   S++A     G  + A  + R M 
Sbjct: 398 VEHYGCAVDMLGRAGRLDEAEALVAAMPVPPDALVRGSLLAACRACGDVERAERVMRWMA 457

Query: 318 GL 319
            +
Sbjct: 458 AV 459


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 201/566 (35%), Positives = 307/566 (54%), Gaps = 19/566 (3%)

Query: 41  KQFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLS 94
           KQ HA +IK G     S Q+Q   +Y K    +   ++ + + L+N  V  +N +I  + 
Sbjct: 93  KQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKN--VVSWNTLICGVV 150

Query: 95  NANPLEAIA-----LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
             N   A+       +R+M+++ + PN  TL  +L+A  +   + + +Q+H + +K+   
Sbjct: 151 EGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFD 210

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
           SN +V + L+  YA  GL+      F       + RDLV W  ++  Y       +A   
Sbjct: 211 SNCFVGSALVDSYAKFGLVDEAQSAFD----EVSSRDLVLWNVMVSCYALNGVQGKAFGV 266

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F  M    ++ D      ++++C  LG   LG ++H  I    F+L  DV + +AL+DMY
Sbjct: 267 FKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDL--DVLVASALVDMY 324

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            K  NI  ARK FD M VKN+VSW +MI G    G  KEA+ + + M  +   PD+  L 
Sbjct: 325 SKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALA 384

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            +L+SC N+        VH Y+ +N       I NALV  Y+KCG I  AF  F S+   
Sbjct: 385 SILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEP 444

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           D+ S+T+++   A HG + + +++F +M    + PD+V F+GVLSAC+H G V EG  +F
Sbjct: 445 DIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYF 504

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
             M  VY + P +EHY C++DL GRAG + EA++L+ SMP+ P +   GA LGACK+H  
Sbjct: 505 NLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAFLGACKVHRN 564

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           V LA    E L   EP     Y LM+N+Y+S   W +  ++RK M+ER   K PGCS +E
Sbjct: 565 VGLARWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWME 624

Query: 570 VYGEFYEFRKGDKSHPKTLEIYKLLD 595
           + GE + F   DK+HP+ +++Y +LD
Sbjct: 625 IAGEVHTFVSRDKTHPRAVQVYGMLD 650


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 192/534 (35%), Positives = 304/534 (56%), Gaps = 11/534 (2%)

Query: 78  LQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +  P +  YN +I   ++      A+ L+  M   GL  + +TL  V+ AC     L +G
Sbjct: 100 IPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGL-IG 158

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           Q +H+ ++ +   S V V N L+  Y   G +    ++F+        RD VSW ++I A
Sbjct: 159 Q-LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFY---GMGGIRDEVSWNSMIVA 214

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y +    ++A+  F +M +  L  D   L  VL+A + L DLS G++ H  +    F+ +
Sbjct: 215 YGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQN 274

Query: 257 PDVFIHNALIDMYLKCGN-IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF-KEALDIFR 314
             V   + LID+Y KCG  +   RKVF+E+   ++V WN+M++G +   +F ++AL+ FR
Sbjct: 275 SHV--GSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFR 332

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF-IGNALVDMYAKC 373
           +MQG+G +P+D + VCV+++C+N+     GK +H+   K+ I ++   + NAL+ MY+KC
Sbjct: 333 QMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKC 392

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G +  A  +F  M   +  S  +MI G A HG   ++L +F  M +  I P  +TF+ VL
Sbjct: 393 GNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVL 452

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SAC+H G VEEG  +F  M   +N++P+ EHY CM+DL GRAG + EA +LI  MP  P 
Sbjct: 453 SACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPG 512

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
           +  W +LLGAC+ H  +ELA      +++ EP     Y++++N+Y+S  RW+E   +RK 
Sbjct: 513 SIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKF 572

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           M++R VKK PGCS +EV    + F   D SHP   EIY+ L+E+  + K  GY+
Sbjct: 573 MRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYV 626



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 216/502 (43%), Gaps = 76/502 (15%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH----- 176
           ++LK C   + L  G+ +H+  +K+ +  + Y  N  + LY+ CG +    K F      
Sbjct: 13  HLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 177 ------------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
                                   F Q P+   DLVS+ TLI AY        A+  F  
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEP--DLVSYNTLISAYADCGETAPALGLFSG 130

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +  L  D   L  V++AC    D+ L  ++H     + F+    V ++NAL+  Y K 
Sbjct: 131 MREMGLDMDXFTLSAVITACCD--DVGLIGQLHSVAVSSGFD--SYVSVNNALLTYYGKN 186

Query: 273 GNIPSARKVFDEM-PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           G++  A++VF  M  +++ VSWNSMI       +  +AL +F+ M   GL  D FTL  V
Sbjct: 187 GDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASV 246

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC-GRIDQAFGVFRSMKCRD 390
           L +   +  L  G   H  L K   + +  +G+ L+D+Y+KC G +     VF  +   D
Sbjct: 247 LTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPD 306

Query: 391 VYSYTAMIVGLAIHGKAWK-ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG---- 445
           +  +  M+ G + + +  + AL+ F +M  +G  P++ +FV V+SACS+     +G    
Sbjct: 307 LVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 446 -------------------------CKHFLDMSRVYNLQPQ--TEHYGCMVDLFGRAGLI 478
                                    C +  D  R+++   +  T     M+  + + G+ 
Sbjct: 367 SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIE 426

Query: 479 REALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAE---IVMENLVRFEPEGDGAYI 532
            E+L L + M    + P +  + ++L AC    +VE       +M+     EPE +  Y 
Sbjct: 427 MESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAE-HYS 485

Query: 533 LMTNIYSSKNRWKEALKLRKKM 554
            M ++     +  EA  L  +M
Sbjct: 486 CMIDLLGRAGKLSEAENLIARM 507


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 198/580 (34%), Positives = 315/580 (54%), Gaps = 17/580 (2%)

Query: 37  VGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS------LQNPQVYLYNFII 90
           VG  +Q HA  +K  S +    I+ + ++++   N + +        +++  +  +  II
Sbjct: 151 VGTGRQVHAHALK--SERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSII 208

Query: 91  QCLSNAN-PLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
              +     +EA+ ++REM+++G   PN +      +AC    S   G+Q+H  S+K  L
Sbjct: 209 AGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRL 268

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             ++YV  +L  +YA C  + +    F+  + P    DLVSW +++ AY      +EA++
Sbjct: 269 DRDLYVGCSLSDMYARCKNLDSARVAFYRIEAP----DLVSWNSIVNAYSVEGLLSEALV 324

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F +M  + LRPDG+ +  +L AC     L  G  IH Y+      L  DV + N+L+ M
Sbjct: 325 LFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVK--LGLDGDVSVCNSLLSM 382

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y +C ++ SA  VF E+  ++VV+WNS++         +E L +F  +       D  +L
Sbjct: 383 YARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISL 442

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM-K 387
             VL++ A +G+ E+ K VH Y  K  +  D  + N L+D YAKCG +D A  +F  M  
Sbjct: 443 NNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGN 502

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            RDV+S++++IVG A  G A +A D+FS M  +GI P+ VTF+GVL+ACS  G V EGC 
Sbjct: 503 NRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCY 562

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           ++  M   Y + P  EH  C+VDL  RAG + EA + I  MP  PD  +W  LL A K+H
Sbjct: 563 YYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMH 622

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
             +E+ +   E ++  +P    AY+L+ NIY++   W E  +L+K M+   VKK+PG S 
Sbjct: 623 NDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSW 682

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           V++ GE   F   D+SHP++ EIY +L+ I  +    GY+
Sbjct: 683 VKLKGELKVFIVEDRSHPESEEIYAMLELIGMEMIKAGYV 722



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 229/468 (48%), Gaps = 13/468 (2%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS 94
           +S+ Q ++ H  ++ + S     Q+  + ++    GN +  +  +NP V   + I   + 
Sbjct: 58  RSLPQGRRVHRHLVASSSSSPDAQLAGNTVL----GNHLITMYGRNP-VSWASVIAAHVQ 112

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    +A+ L+  ML  G   + + L   ++AC +   +  G+QVHA+++K+   S++ V
Sbjct: 113 NGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIV 172

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM- 213
            N L+ +Y+  GL+     LF   +     +DL+SW ++I  + +  +  EA+  F +M 
Sbjct: 173 QNALVTMYSKNGLVDDGFMLFERIK----DKDLISWGSIIAGFAQQGFEMEALQVFREMI 228

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
            + +  P+         AC  +G    G +IH       + L  D+++  +L DMY +C 
Sbjct: 229 VEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIK--YRLDRDLYVGCSLSDMYARCK 286

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
           N+ SAR  F  +   ++VSWNS++   +  G   EAL +F  M+  GL+PD  T+  +L 
Sbjct: 287 NLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLC 346

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +C     L  G+ +H+YL K  ++ D  + N+L+ MYA+C  +  A  VF  +K +DV +
Sbjct: 347 ACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVT 406

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           + +++   A H    + L +FS +++     D ++   VLSA +  G  E   K     +
Sbjct: 407 WNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEM-VKQVHAYA 465

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
               L         ++D + + G + +A+ L + M    D F W +L+
Sbjct: 466 FKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLI 513



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 165/374 (44%), Gaps = 61/374 (16%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPD------VFIHNALIDMYLKCGNIPSARKV 281
           ++SACS+L  L  G ++HR++  +  + SPD        + N LI MY            
Sbjct: 50  LVSACSRLRSLPQGRRVHRHLVASSSS-SPDAQLAGNTVLGNHLITMY------------ 96

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
                 +N VSW S+IA     G+  +AL +F  M   G   D F L   + +C  +G +
Sbjct: 97  -----GRNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDV 151

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
             G+ VH +  K+   +D  + NALV MY+K G +D  F +F  +K +D+ S+ ++I G 
Sbjct: 152 GTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGF 211

Query: 402 AIHGKAWKALDIFSEMSQVGI-EPDEVTFVGVLSACSHAGLVEEG--------------- 445
           A  G   +AL +F EM   G   P+E  F     AC   G  E G               
Sbjct: 212 AQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRD 271

Query: 446 -------------CKHFLDMSRV--YNLQ-PQTEHYGCMVDLFGRAGLIREALDLIKSM- 488
                        CK+ LD +RV  Y ++ P    +  +V+ +   GL+ EAL L   M 
Sbjct: 272 LYVGCSLSDMYARCKN-LDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMR 330

Query: 489 --PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI-LMTNIYSSKNRWK 545
              L PD      LL AC     +    ++   LV+   +GD +    + ++Y+  +   
Sbjct: 331 DSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLS 390

Query: 546 EALKLRKKMKERKV 559
            A+ +  ++K++ V
Sbjct: 391 SAMDVFHEIKDQDV 404


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 192/534 (35%), Positives = 304/534 (56%), Gaps = 11/534 (2%)

Query: 78  LQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +  P +  YN +I   ++      A+ L+  M   GL  + +TL  V+ AC     L +G
Sbjct: 100 IPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGL-IG 158

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           Q +H+ ++ +   S V V N L+  Y   G +    ++F+        RD VSW ++I A
Sbjct: 159 Q-LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFY---GMGGIRDEVSWNSMIVA 214

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y +    ++A+  F +M +  L  D   L  VL+A + L DLS G++ H  +    F+ +
Sbjct: 215 YGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQN 274

Query: 257 PDVFIHNALIDMYLKCGN-IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF-KEALDIFR 314
             V   + LID+Y KCG  +   RKVF+E+   ++V WN+M++G +   +F ++AL+ FR
Sbjct: 275 SHV--GSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFR 332

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF-IGNALVDMYAKC 373
           +MQG+G +P+D + VCV+++C+N+     GK +H+   K+ I ++   + NAL+ MY+KC
Sbjct: 333 QMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKC 392

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G +  A  +F  M   +  S  +MI G A HG   ++L +F  M +  I P  +TF+ VL
Sbjct: 393 GNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVL 452

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SAC+H G VEEG  +F  M   +N++P+ EHY CM+DL GRAG + EA +LI  MP  P 
Sbjct: 453 SACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPG 512

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
           +  W +LLGAC+ H  +ELA      +++ EP     Y++++N+Y+S  RW+E   +RK 
Sbjct: 513 SIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKF 572

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           M++R VKK PGCS +EV    + F   D SHP   EIY+ L+E+  + K  GY+
Sbjct: 573 MRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYV 626



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 128/502 (25%), Positives = 217/502 (43%), Gaps = 76/502 (15%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH----- 176
           ++LK C   + L  G+ +H+  +K+ +  + Y  N  + LY+ CG +    K F      
Sbjct: 13  HLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 177 ------------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
                                   F Q P+   DLVS+ TLI AY        A+  F  
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEP--DLVSYNTLISAYADCGETAPALGLFSG 130

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +  L  DG  L  V++AC    D+ L  ++H     + F+    V ++NAL+  Y K 
Sbjct: 131 MREMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAVSSGFD--SYVSVNNALLTYYGKN 186

Query: 273 GNIPSARKVFDEM-PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           G++  A++VF  M  +++ VSWNSMI       +  +AL +F+ M   GL  D FTL  V
Sbjct: 187 GDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASV 246

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC-GRIDQAFGVFRSMKCRD 390
           L +   +  L  G   H  L K   + +  +G+ L+D+Y+KC G +     VF  +   D
Sbjct: 247 LTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPD 306

Query: 391 VYSYTAMIVGLAIHGKAWK-ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG---- 445
           +  +  M+ G + + +  + AL+ F +M  +G  P++ +FV V+SACS+     +G    
Sbjct: 307 LVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 446 -------------------------CKHFLDMSRVYNLQPQ--TEHYGCMVDLFGRAGLI 478
                                    C +  D  R+++   +  T     M+  + + G+ 
Sbjct: 367 SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIE 426

Query: 479 REALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAE---IVMENLVRFEPEGDGAYI 532
            E+L L + M    + P +  + ++L AC    +VE       +M+     EPE +  Y 
Sbjct: 427 MESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAE-HYS 485

Query: 533 LMTNIYSSKNRWKEALKLRKKM 554
            M ++     +  EA  L  +M
Sbjct: 486 CMIDLLGRAGKLSEAENLIARM 507


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 179/520 (34%), Positives = 300/520 (57%), Gaps = 9/520 (1%)

Query: 81  PQVYLYNFIIQCLSNA-NPLEAIALYREMLI-KGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           P V L+  II     + +P  A+A +  M++ + + P+  TL  V  AC Q  + ++G+ 
Sbjct: 306 PDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRS 365

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           VH +  +  L + + + N+L+ LY   G IK    LF       + +D++SW+T++  Y 
Sbjct: 366 VHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFR----EMSDKDIISWSTMVACYA 421

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
                T+ +  F +M    ++P+ + +V VL AC+ + +L  G+KIH    +  F +  +
Sbjct: 422 DNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEM--E 479

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             +  AL+DMY+KC +   A  +F+ MP K+V++W  + +G    G   E++ +FR M  
Sbjct: 480 TTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLS 539

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G +PD   LV +L + + +G L+    +H ++ KN    + FIG +L+++YAKC  I+ 
Sbjct: 540 SGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIED 599

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS-QVGIEPDEVTFVGVLSACS 437
           A  VF+ M  +DV +++++I     HG+  +AL +F +M+     +P+ VTF+ +LSACS
Sbjct: 600 ANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACS 659

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           H+GL++EG   F  M   Y L+P +EHY  MVDL GR G +  ALD+I +MP+     +W
Sbjct: 660 HSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIW 719

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GALLGAC+IH  +++ E+  +NL   +P   G YIL++NIYS    W  A KLR+ +KE+
Sbjct: 720 GALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSATKLRRLVKEK 779

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           ++ K  G S+VE+  E   F  GD+ H ++  IY++L ++
Sbjct: 780 RLNKIVGQSVVELKNEVRSFIAGDRIHDESDHIYEILTKL 819



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 132/500 (26%), Positives = 245/500 (49%), Gaps = 31/500 (6%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQH-----QTQILYDKIISLSRGNEIENLSLQNPQ--V 83
           LE+  S   + Q H+  +K G         +  +LY +  S+   ++   L  + P   V
Sbjct: 146 LETCCSKLSISQLHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHK---LFQETPHRTV 202

Query: 84  YLYNFIIQCLS-NANPLEAIALYREMLIKGLL-----PNTYTLPYVLKACWQSQSLRVGQ 137
           YL+N +++        +E ++L+R+M     +     P+ Y++   LK+C   + L +G+
Sbjct: 203 YLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGK 262

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            +H +  K  +  +++V + L+ LY  CG +    K+  F ++P+   D+V WT++I  Y
Sbjct: 263 VIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKV--FMEYPKP--DVVLWTSIISGY 318

Query: 198 VKMDYPTEAILSFFD--MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            +   P E  L+FF   +    + PD + LV V SAC++L +  LG  +H ++      L
Sbjct: 319 EQSGSP-ELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRK--GL 375

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
              + + N+L+ +Y K G+I +A  +F EM  K+++SW++M+A     G   + LD+F  
Sbjct: 376 DNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNE 435

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M    +KP+  T+V VL +CA I  LE G  +H          +  +  AL+DMY KC  
Sbjct: 436 MLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFS 495

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
            ++A  +F  M  +DV ++  +  G A +G   +++ +F  M   G  PD +  V +L+ 
Sbjct: 496 PEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTT 555

Query: 436 CSHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGC-MVDLFGRAGLIREALDLIKSMPLVPD 493
            S  G++++  C H   +   +      +  G  +++++ +   I +A  + K M    D
Sbjct: 556 ISELGILQQAVCLHAFVIKNGFE---NNQFIGASLIEVYAKCSSIEDANKVFKGMTY-KD 611

Query: 494 AFVWGALLGACKIHAKVELA 513
              W +++ A   H + E A
Sbjct: 612 VVTWSSIIAAYGFHGQGEEA 631


>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 532

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 186/493 (37%), Positives = 289/493 (58%), Gaps = 29/493 (5%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
           Q +++   +Q+H++ + +A   + +    ++ L+AV       H    F   P   R   
Sbjct: 19  QCRTMSQIKQMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPH--RTTF 76

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS--------------K 234
            W T+I+ +V+ +    A+  + +M Q    P+      VL AC+              K
Sbjct: 77  IWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPVGLASHAQVIK 136

Query: 235 LG----DLSLGIKIHRYITDNH-------FNLSP--DVFIHNALIDMYLKCGNIPSARKV 281
           LG    D  L   IH Y   +        F++S   DV    ALI+ Y+K G++  AR++
Sbjct: 137 LGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFAREL 196

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           FD+MP +N VSW++MI G  H G F+EAL++F  +Q  GL+P+   +V  L +C+ +G L
Sbjct: 197 FDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSL 256

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
           + G+W+H Y+D+N    D  +G ALVDMYAKCG I+ A  VF  M  +D +++T++I GL
Sbjct: 257 DHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGL 316

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
           A HG++  A+ +F  M    + P+EVTF+ VLSACS  GLV+EG + F  MS VY ++P 
Sbjct: 317 ANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPG 376

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
            +HYGCMVDL GRAGL+ EA  L++ MP+ PD++V GALL +C++H  VEL +  +E+LV
Sbjct: 377 VQHYGCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSCRVHGDVELGKETVESLV 436

Query: 522 RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581
               +  G ++L++N+Y+S N+W   +K+RK+M  +KVKK PGCS +E+ G   EF  GD
Sbjct: 437 ERGLDHGGVHVLLSNMYASSNQWDWVVKVRKEMGAKKVKKVPGCSSIEIDGSVSEFIAGD 496

Query: 582 KSHPKTLEIYKLL 594
            S+ +  ++  +L
Sbjct: 497 MSYLRVEDVMLVL 509



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 133/433 (30%), Positives = 210/433 (48%), Gaps = 48/433 (11%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL---SRGNEIEN-----LSLQNPQ 82
           LE  +++ Q+KQ H+ +I + S          KIISL   S   +I +     LSL +  
Sbjct: 17  LEQCRTMSQIKQMHSHLIVSAS--RLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRT 74

Query: 83  VYLYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
            +++N II+     N    A++LY+ ML  G LPN YT  +VL+AC  + +  VG   HA
Sbjct: 75  TFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRAC--TDNSPVGLASHA 132

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH------------------------- 176
             +K    S  +V N L+ LYA    ++A  KLF                          
Sbjct: 133 QVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEF 192

Query: 177 ----FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
               F Q P  +R+ VSW+ +I  YV M    EA+  F D+    LRP+   +V  L+AC
Sbjct: 193 ARELFDQMP--ERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTAC 250

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           S LG L  G  IH Y+  N   L  D  +  AL+DMY KCG I  A  VF++MP K+  +
Sbjct: 251 SYLGSLDHGRWIHAYVDRNGTEL--DRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFA 308

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           + S+I+GL + GQ  +A+ +F RMQ   + P++ T +CVL++C+ +G ++ G  +   + 
Sbjct: 309 FTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMS 368

Query: 353 KNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKA 410
             +    G      +VD+  + G +++A  + R M    D Y   A++    +HG     
Sbjct: 369 VVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSCRVHGDVELG 428

Query: 411 LDIFSEMSQVGIE 423
            +    + + G++
Sbjct: 429 KETVESLVERGLD 441


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 205/577 (35%), Positives = 302/577 (52%), Gaps = 16/577 (2%)

Query: 41  KQFHAFIIKTGSPQHQTQI------LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS 94
           +Q H + I+TG    +  +      +Y K   +     +  L +    V   + I     
Sbjct: 122 RQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQ 181

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    +A+  Y  M   GL+P+ + L   L +C     + +GQQ H   +K  L  +V V
Sbjct: 182 NKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSV 241

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP-TEAILSFFDM 213
            NTL+ LYA    +    K+F +      +RD VSW T+I A        +EAI  F +M
Sbjct: 242 SNTLLALYAETSRLAECQKVFSW----MLERDQVSWNTVIGALADSGASVSEAIEVFLEM 297

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
            +A   P+ +  + +L+  S L    L  +IH  I    +N+  D  I NAL+  Y K G
Sbjct: 298 MRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALIL--KYNVKDDNAIENALLACYGKSG 355

Query: 274 NIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
            + +  ++F  M  + + VSWNSMI+G  H     +A+D+   M   G + D FT   VL
Sbjct: 356 EMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVL 415

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           ++CA +  LE G  VH    +  + +D  IG+ALVDMY+KCGRID A   F  M  R++Y
Sbjct: 416 SACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLY 475

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+ +MI G A HG    AL +F+ M   G  PD +TFVGVLSACSH GLV+EG ++F  M
Sbjct: 476 SWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSM 535

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC--KIHAKV 510
           + VY L P+ EHY CMVDL GRAG + +  + I  MP+ P+  +W  +LGAC      K 
Sbjct: 536 TEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKT 595

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           EL     E L   +P+    Y+L++N+Y+S  +W++  + R+ M+E  VKK  GCS V +
Sbjct: 596 ELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTM 655

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
               + F  GD SHP+   IY  L E+  + ++ GY+
Sbjct: 656 KDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYV 692



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 202/447 (45%), Gaps = 43/447 (9%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL-RVGQQVHAYSMKTALL-SNV 152
           N  P +A  + +EM+ +G LPN +     ++AC +S    R G+QVH Y+++T L  + V
Sbjct: 79  NGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKV 138

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V N L+ +YA CG I     +F         +D VSW ++I    +     +A+ S+  
Sbjct: 139 AVGNGLINMYAKCGDIDHARSVFGL----MVDKDSVSWNSMITGLDQNKCFEDAVKSYNS 194

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +  L P    L+  LS+C+ LG + LG + H         L  DV + N L+ +Y + 
Sbjct: 195 MRKTGLMPSNFALISALSSCASLGCILLGQQTHG--EGIKLGLDMDVSVSNTLLALYAET 252

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG-QFKEALDIFRRMQGLGLKPDDFTLVCV 331
             +   +KVF  M  ++ VSWN++I  L   G    EA+++F  M   G  P+  T + +
Sbjct: 253 SRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINL 312

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM-KCRD 390
           L + +++   +L   +H  + K ++  D  I NAL+  Y K G ++    +F  M + RD
Sbjct: 313 LATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRD 372

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG----- 445
             S+ +MI G   +    KA+D+   M Q G   D  TF  VLSAC+    +E G     
Sbjct: 373 EVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHA 432

Query: 446 -----------------------CKHFLDMSRVYNLQPQTEHYG--CMVDLFGRAGLIRE 480
                                  C      SR +NL P    Y    M+  + R G    
Sbjct: 433 CAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDN 492

Query: 481 ALDLIKSMPL---VPDAFVWGALLGAC 504
           AL L   M L   +PD   +  +L AC
Sbjct: 493 ALRLFTRMKLSGQLPDHITFVGVLSAC 519



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 176/365 (48%), Gaps = 10/365 (2%)

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H   +K    S++++ NTL+ +Y   G   +  KLF         R+ V+W  LI  Y +
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLF----DEMPDRNGVTWACLISGYTQ 78

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK-LGDLSLGIKIHRYITDNHFNLSPD 258
              P +A     +M      P+       + AC + +     G ++H Y      N    
Sbjct: 79  NGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLN-DAK 137

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           V + N LI+MY KCG+I  AR VF  M  K+ VSWNSMI GL     F++A+  +  M+ 
Sbjct: 138 VAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRK 197

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            GL P +F L+  L+SCA++G + LG+  H    K  ++ D  + N L+ +YA+  R+ +
Sbjct: 198 TGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAE 257

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKA-WKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
              VF  M  RD  S+  +I  LA  G +  +A+++F EM + G  P+ VTF+ +L+  S
Sbjct: 258 CQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVS 317

Query: 438 HAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
                +   + H L +   YN++        ++  +G++G +    ++   M    D   
Sbjct: 318 SLSTSKLSHQIHALILK--YNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVS 375

Query: 497 WGALL 501
           W +++
Sbjct: 376 WNSMI 380


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 188/527 (35%), Positives = 299/527 (56%), Gaps = 54/527 (10%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           V++   +  SL   ++VHA          +Y+ N     Y +  L++ V  L H   H  
Sbjct: 11  VVRILERCSSLNQAKEVHA---------QIYIKNLQQSSYVLTKLLRLVTALPHVPLHSY 61

Query: 183 AQ--------RDLVSWTTLIQAYVKMDYPTEAILSFFD-MCQANLRPDGMILVIVLSACS 233
            +         +  +WT LI+AY  +  P    LSF+  M +  + P       + SAC+
Sbjct: 62  PRLLFSQLHTPNPFAWTALIRAYA-LRGPLSQALSFYSSMRKRRVSPISFTFSALFSACA 120

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
            +   +LG ++H   T      S D++++NA+IDMY+KCG++  AR VFDEMP ++V+SW
Sbjct: 121 AVRHSALGAQLHAQ-TLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISW 179

Query: 294 NSMIAGLTHRGQFK-------------------------------EALDIFRRMQGLGLK 322
             +I   T  G  +                               +AL++FRR++  G++
Sbjct: 180 TGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVE 239

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH--INTDGFIGNALVDMYAKCGRIDQAF 380
            D+ TLV V+++CA +G  +   W+    + +   +  +  +G+AL+DMY+KCG +++A+
Sbjct: 240 IDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAY 299

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF+ M+ R+V+SY++MIVG AIHG+A  A+ +F +M + G++P+ VTFVGVL+ACSHAG
Sbjct: 300 DVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAG 359

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LV++G + F  M + Y + P  E Y CM DL  RAG + +AL L+++MP+  D  VWGAL
Sbjct: 360 LVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGAL 419

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           LGA  +H   ++AEI  + L   EP+  G Y+L++N Y+S  RW +  K+RK ++E+ +K
Sbjct: 420 LGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLK 479

Query: 561 KTPGCSLVEVY-GEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           K PG S VE   G  ++F  GD SHPK  EI K L++++ + K  GY
Sbjct: 480 KNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGY 526



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 173/363 (47%), Gaps = 39/363 (10%)

Query: 78  LQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           L  P  + +  +I+  +   PL +A++ Y  M  + + P ++T   +  AC   +   +G
Sbjct: 69  LHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALG 128

Query: 137 QQVHAYS-MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            Q+HA + +     S++YV N ++ +Y  CG ++    +F   + P  +RD++SWT LI 
Sbjct: 129 AQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFD--EMP--ERDVISWTGLIV 184

Query: 196 AYVKMD-------------------------------YPTEAILSFFDMCQANLRPDGMI 224
           AY ++                                 P +A+  F  +    +  D + 
Sbjct: 185 AYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVT 244

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           LV V+SAC++LG       I      + F +  +V + +ALIDMY KCGN+  A  VF  
Sbjct: 245 LVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKG 304

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           M  +NV S++SMI G    G+ + A+ +F  M   G+KP+  T V VL +C++ G ++ G
Sbjct: 305 MRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQG 364

Query: 345 KWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLA 402
           + +   ++K + +     +   + D+ ++ G +++A  +  +M    D   + A++    
Sbjct: 365 QQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASH 424

Query: 403 IHG 405
           +HG
Sbjct: 425 VHG 427



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 133/272 (48%), Gaps = 12/272 (4%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH--AYSMKTALLSNV 152
           NA P++A+ ++R +  +G+  +  TL  V+ AC Q  + +    +   A S    +  NV
Sbjct: 220 NAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNV 279

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V + L+ +Y+ CG ++  + +F   +    +R++ S++++I  +        AI  F+D
Sbjct: 280 LVGSALIDMYSKCGNVEEAYDVFKGMR----ERNVFSYSSMIVGFAIHGRARAAIKLFYD 335

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +  ++P+ +  V VL+ACS  G +  G ++   + +  + ++P   ++  + D+  + 
Sbjct: 336 MLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASM-EKCYGVAPTAELYACMTDLLSRA 394

Query: 273 GNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           G +  A ++ + MP++ +   W +++      G    A    +R+    L+PD+     +
Sbjct: 395 GYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRL--FELEPDNIGNYLL 452

Query: 332 L-NSCANIG-WLELGKWVHTYLDKNHINTDGF 361
           L N+ A+ G W ++ K      +KN     G+
Sbjct: 453 LSNTYASAGRWDDVSKVRKLLREKNLKKNPGW 484


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 185/533 (34%), Positives = 301/533 (56%), Gaps = 16/533 (3%)

Query: 82  QVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V+ +N II   ++N  P E    Y++M  +G++P+ +T P  +KAC     ++   ++H
Sbjct: 23  NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIK---KIH 79

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
               K  L  +V++ + L+  Y   GL++  H    F + P   RD+V W  ++  Y ++
Sbjct: 80  GLLFKFGLELDVFIGSALVNCYLKFGLME--HAQVAFEELPI--RDVVLWNAMVNGYAQI 135

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
                 + +F  M   ++ P    +  +LS  + +GDL+ G  IH +     ++    V 
Sbjct: 136 GQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYD--SGVA 193

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           + N+LIDMY KC  I  A ++F+ M  K++ SWNS+ +     G     L +  RM G G
Sbjct: 194 VSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAG 253

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG------FIGNALVDMYAKCG 374
           ++PD  T+  VL +C+++  L  G+ +H Y+  + +  DG       + NA++DMYAKCG
Sbjct: 254 IQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCG 313

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            +  A  VF  M  +DV S+  MI+G  +HG   +AL++FS M +V ++PDEVTFVGVLS
Sbjct: 314 SMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLS 373

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           ACSHAG V +G      M   Y++ P  EHY C++D+ GRAG + EA +L  +MP+  + 
Sbjct: 374 ACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANP 433

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            VW ALL AC++H    LAE+  + +   EPE  G+Y+LM+N+Y +  R++E L++R  M
Sbjct: 434 VVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTM 493

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +++ V+KTPGCS +E+    + F   D++HP+   IY  L+ +  +   HGY+
Sbjct: 494 RQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAYSIYAGLNSLTARLCEHGYV 546



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 171/384 (44%), Gaps = 47/384 (12%)

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y+ C  +     +F     P  + ++ ++  +I  ++   +P E    +  M    + P
Sbjct: 1   MYSKCNQMNFALSIF---SDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMP 57

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D       + AC  + ++    KIH  +    F L  DVFI +AL++ YLK G +  A+ 
Sbjct: 58  DKFTFPCAIKACLDVLEIK---KIHGLLFK--FGLELDVFIGSALVNCYLKFGLMEHAQV 112

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
            F+E+P+++VV WN+M+ G    GQF+  L+ FRRM    + P  FT+  +L+  A +G 
Sbjct: 113 AFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGD 172

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L  G+ +H +  K   ++   + N+L+DMY KC  I+ A  +F  M+ +D++S+ ++   
Sbjct: 173 LNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSV 232

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH----------------AGLVEE 444
               G     L +   M   GI+PD VT   VL ACSH                +GL ++
Sbjct: 233 HEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKD 292

Query: 445 G------------------CKHFLDMSRVYN--LQPQTEHYGCMVDLFGRAGLIREALDL 484
           G                  C    D   V+          +  M+  +G  G   EAL++
Sbjct: 293 GKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEM 352

Query: 485 IKSM---PLVPDAFVWGALLGACK 505
              M    L PD   +  +L AC 
Sbjct: 353 FSRMCEVQLKPDEVTFVGVLSACS 376


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 182/481 (37%), Positives = 286/481 (59%), Gaps = 15/481 (3%)

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL-----IKAVHKLFHFRQHPQAQRDL 187
           +RV +Q+HA+ +   L  + + F  L ++ A C L     I     +F    HP    ++
Sbjct: 1   MRVLRQLHAHILTRPLPLSSFAF-ALSKIVAFCALSPFGNINYARSVFAQIPHP----NI 55

Query: 188 VSWTTLIQAYVKM-DYPTEAILSFFDMCQANLR-PDGMILVIVLSACSKLGDLSLGIKIH 245
            SW +LI+ Y ++     E I  F  + +     P+   L  VL AC+ +     G+++H
Sbjct: 56  FSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVH 115

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
            ++  + F  S  +F+  +L++ Y KC  I  ARKVF+EMPV+N+V+W +MI+G    G 
Sbjct: 116 SHVLKDGFGSS--LFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGA 173

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
             EA+++FR MQ  G++PD  TLV V+++CA  G L++G W+H Y++K  + TD  +  A
Sbjct: 174 VDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTA 233

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           LVDMYAKCG I++A  VF  M  +D  ++++MI+G A HG A  A+D F +M +  + PD
Sbjct: 234 LVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPD 293

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
            VTF+ VLSAC+H GLV  G + F  +   + ++P  EHYGC VDL  R+GL+ EA  + 
Sbjct: 294 HVTFLAVLSACAHGGLVSRG-RRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRIT 352

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
            +M + P+A  W +LL  CK    + L EIV   L+  EP     YI+++N+YSS ++W+
Sbjct: 353 TTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWE 412

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           +  +LRK MKE+ +K  PGCS +EV G  +EF  GD+SHP+   + + ++E+  + ++ G
Sbjct: 413 KMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSG 472

Query: 606 Y 606
           Y
Sbjct: 473 Y 473



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 194/359 (54%), Gaps = 17/359 (4%)

Query: 40  LKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQVYLYNFIIQ 91
           L+Q HA I+    P         KI++    +   N++        + +P ++ +N +I+
Sbjct: 4   LRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIK 63

Query: 92  CLSNANPL--EAIALYREMLIKGL-LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
             S  + L  E I L++++   G  +PN++TL +VLKAC    +   G QVH++ +K   
Sbjct: 64  GYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGF 123

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            S+++V  +L+  Y  C  I    K+F         R+LV+WT +I  + ++    EA+ 
Sbjct: 124 GSSLFVQTSLVNFYGKCEEIGFARKVF----EEMPVRNLVAWTAMISGHARVGAVDEAME 179

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F +M +A ++PD M LV V+SAC+  G L +G  +H YI + +F L+ D+ +  AL+DM
Sbjct: 180 LFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYI-EKYFVLT-DLELSTALVDM 237

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KCG I  A++VF  MPVK+  +W+SMI G  + G  ++A+D F++M    + PD  T 
Sbjct: 238 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTF 297

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           + VL++CA+ G +  G+   + + +  I          VD+  + G +++A+ +  +MK
Sbjct: 298 LAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMK 356



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+REM   G+ P+  TL  V+ AC  + +L +G  +HAY  K  +L+++ +   L+
Sbjct: 176 EAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALV 235

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I+   ++F         +D  +W+++I  +       +AI +F  M +  + 
Sbjct: 236 DMYAKCGCIERAKQVFVH----MPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVT 291

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  + VLSAC+  G +S G +    + +  F + P V  +   +D+  + G +  A 
Sbjct: 292 PDHVTFLAVLSACAHGGLVSRGRRFWSLMLE--FGIEPSVEHYGCKVDLLCRSGLVEEAY 349

Query: 280 KVFDEMPV-KNVVSWNSMIAG 299
           ++   M +  N  +W S++ G
Sbjct: 350 RITTTMKIPPNAATWRSLLMG 370


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 186/510 (36%), Positives = 300/510 (58%), Gaps = 11/510 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+ +ML  G  P+ YTL  +L AC +  S R+GQQ+H+ +++  L S+  V   L+
Sbjct: 238 EAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLV 297

Query: 160 RLYAVCGLIKAVHKLFH-FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF-DMCQAN 217
            +YA     +++H     F + P+   ++++WT L+  YV+       ++  F  M    
Sbjct: 298 DMYAKSHNGQSLHNAREVFNRMPK--HNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEG 355

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           +RP+ +    +L AC+ LGD   G +IH +   +  NL+    + NAL+ MY + G+I  
Sbjct: 356 IRPNHITYSSMLKACANLGDQDSGRQIHTHCVKS--NLADLNVVGNALVSMYAESGSIEE 413

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           AR  FD++  KN+VS++  + G      +++      RM+ LG+    FT   ++++ A+
Sbjct: 414 ARHAFDQLYEKNMVSFSGNLDGDGRSNTYQDYQ--IERME-LGIST--FTFGSLISAAAS 468

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +G L  G+ +H    K    +D  IGN+LV MY++CG +  A  VF  M   +V S+T+M
Sbjct: 469 VGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSM 528

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I GLA HG A +AL++F +M   G++P++VT++ VLSACSHAGLV+EG +HF  M + + 
Sbjct: 529 ISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHG 588

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           L P+ EHY CMVDL GR+GL+ +ALD I  MP   DA VW  LLGACK H  +++ EI  
Sbjct: 589 LIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAA 648

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
            ++++ EP+    Y+L++N+Y+    W +  ++R  M+++ + K  G S + V    +EF
Sbjct: 649 NHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEF 708

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R GD SHP+  EIY  L+ ++ + K  GY+
Sbjct: 709 RAGDTSHPQAEEIYTKLETLIREIKVMGYV 738



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 211/411 (51%), Gaps = 21/411 (5%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV-GQQVHAYS 143
           +  +  CLS N    EA+ L+ E L +GLLPN +TL    +AC+ S+   + G  V    
Sbjct: 120 WTAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLV 179

Query: 144 MKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            K     ++V V   L+ ++A  G + A+ ++F        +R +V WT LI  Y +  Y
Sbjct: 180 FKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVF----DGLFERTVVVWTLLITRYAQSGY 235

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             EA+  F DM +   +PD   L  +LSAC++LG   LG ++H         L  D  + 
Sbjct: 236 SDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLAL--RLGLESDSCVS 293

Query: 263 NALIDMYLKCGN---IPSARKVFDEMPVKNVVSWNSMIAGLTHRG-QFKEALDIFRRMQG 318
             L+DMY K  N   + +AR+VF+ MP  NV++W ++++G   RG Q  + + +F +M  
Sbjct: 294 CGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLN 353

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G++P+  T   +L +CAN+G  + G+ +HT+  K+++     +GNALV MYA+ G I++
Sbjct: 354 EGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEE 413

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A   F  +  +++ S++  + G    G++    D   E  ++GI     TF  ++SA + 
Sbjct: 414 ARHAFDQLYEKNMVSFSGNLDG---DGRSNTYQDYQIERMELGIST--FTFGSLISAAAS 468

Query: 439 AGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
            G++ +G + H L +   +       +   +V ++ R G + +A  +   M
Sbjct: 469 VGMLTKGQRLHALSLKAGFGSDRAIGN--SLVSMYSRCGYLVDACQVFDEM 517



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 171/357 (47%), Gaps = 13/357 (3%)

Query: 133 LRVGQQVHAYSMKTALL--SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
           + +G+ +  + ++T  L  ++  V N+L+ LY+ C  + A   +F     P   RDLVSW
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFD--GMPVGLRDLVSW 120

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC--SKLGDLSLGIKIHRYI 248
           T +     +     EA+  F +  +  L P+   L     AC  S+L  L+ G  +    
Sbjct: 121 TAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVF 180

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
               +    DV +  ALIDM+ K G++ + R+VFD +  + VV W  +I      G   E
Sbjct: 181 KLGFWG--TDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDE 238

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A+++F  M   G +PD +TL  +L++C  +G   LG+ +H+   +  + +D  +   LVD
Sbjct: 239 AVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVD 298

Query: 369 MYAKC---GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG-KAWKALDIFSEMSQVGIEP 424
           MYAK      +  A  VF  M   +V ++TA++ G    G +  + + +F +M   GI P
Sbjct: 299 MYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRP 358

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           + +T+  +L AC++ G  + G +         NL         +V ++  +G I EA
Sbjct: 359 NHITYSSMLKACANLGDQDSG-RQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEA 414


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 218/606 (35%), Positives = 319/606 (52%), Gaps = 19/606 (3%)

Query: 15  DINTFQQLSLLHQSPRLESSKSVG--QLKQFHAFIIKTGSPQHQTQI------LYDKIIS 66
           D++    + LL   P    ++ VG  + ++ H  +I TG       I      +Y K  S
Sbjct: 305 DVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGS 364

Query: 67  LSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKA 126
           ++    +         V   + I     N   +EA+  Y+ M    +LP ++TL   L +
Sbjct: 365 IADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSS 424

Query: 127 CWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRD 186
           C   +  ++GQQ+H  S+K  +  NV V N LM LYA  G +    K+F        + D
Sbjct: 425 CASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFS----SMPEHD 480

Query: 187 LVSWTTLIQAYVKMDYP-TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
            VSW ++I A  + +    EA++ F +  +A  + + +    VLSA S L    LG +IH
Sbjct: 481 QVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIH 540

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRG 304
                N  N++ +    NALI  Y KCG +    K+F  M  + + V+WNSMI+G  H  
Sbjct: 541 GLALKN--NIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNE 598

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
              +ALD+   M   G + D F    VL++ A++  LE G  VH    +  + +D  +G+
Sbjct: 599 LLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGS 658

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IE 423
           ALVDMY+KCGR+D A   F +M  R+ YS+ +MI G A HG+  +AL +F  M   G   
Sbjct: 659 ALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTP 718

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           PD VTFVGVLSACSHAGL+EEG KHF  MS  Y L P+ EH+ CM D+ GRAG + +  D
Sbjct: 719 PDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLED 778

Query: 484 LIKSMPLVPDAFVWGALLGAC--KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
            I+ MP+ P+  +W  +LGAC      K EL +   E L + EPE    Y+L+ N+Y++ 
Sbjct: 779 FIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAG 838

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQS 601
            RW++ +K RKKMK+  VKK  G S V +    + F  GDKSHP    IYK L E+  + 
Sbjct: 839 GRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKM 898

Query: 602 KNHGYI 607
           ++ GY+
Sbjct: 899 RDAGYV 904



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 209/425 (49%), Gaps = 16/425 (3%)

Query: 86  YNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTL-PYVLKACWQSQ-SLRVGQQVHAY 142
           +N II   S A +   A  ++  M   G  P  YT    V  AC  ++  +R+ +Q+   
Sbjct: 174 WNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCT 233

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
             K+ LL++++V + L+  +A  G +    K+F+        R+ V+   L+   V+  +
Sbjct: 234 IQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFN----QMETRNAVTLNGLMVGLVRQKW 289

Query: 203 PTEAILSFFDM-CQANLRPDGMILVIV----LSACSKLGDLSLGIKIHRYITDNHFNLSP 257
             EA   F DM    ++ P+  ++++      S   ++G L  G ++H ++      +  
Sbjct: 290 GEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVG-LKKGREVHGHVITTGL-VDF 347

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
            V I N L++MY KCG+I  AR+VF  M  K+ VSWNSMI GL   G F EA++ ++ M+
Sbjct: 348 MVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMR 407

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              + P  FTL+  L+SCA++ W +LG+ +H    K  I+ +  + NAL+ +YA+ G ++
Sbjct: 408 RHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLN 467

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW-KALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           +   +F SM   D  S+ ++I  LA   ++  +A+  F    + G + + +TF  VLSA 
Sbjct: 468 ECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAV 527

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           S     E G K    ++   N+  +      ++  +G+ G +     +   M    D   
Sbjct: 528 SSLSFGELG-KQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVT 586

Query: 497 WGALL 501
           W +++
Sbjct: 587 WNSMI 591



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 192/423 (45%), Gaps = 26/423 (6%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV--GQQVHAYSMKTALLSNV 152
           N    EA+   R+M+ +G+  N Y    VL+AC +  S+ +  G+Q+H    K +   + 
Sbjct: 80  NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDA 139

Query: 153 YVFNTLMRLYAVCGLIKAV-HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
            V N L+ +Y  C  I +V + L  F       ++ VSW ++I  Y +      A   F 
Sbjct: 140 VVSNVLISMYWKC--IGSVGYALCAFGDIE--VKNSVSWNSIISVYSQAGDQRSAFRIFS 195

Query: 212 DMCQANLRPDGMIL-VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
            M     RP       +V +ACS L +  + +      T     L  D+F+ + L+  + 
Sbjct: 196 SMQYDGSRPTEYTFGSLVTTACS-LTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFA 254

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLV 329
           K G++  ARKVF++M  +N V+ N ++ GL  +   +EA  +F  M  +  + P+ + ++
Sbjct: 255 KSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVIL 314

Query: 330 CVL---NSCANIGWLELGKWVHTYLDKNHINTDGF------IGNALVDMYAKCGRIDQAF 380
                  S A    L+ G+ VH      H+ T G       IGN LV+MYAKCG I  A 
Sbjct: 315 LSSFPEYSLAEEVGLKKGREVH-----GHVITTGLVDFMVGIGNGLVNMYAKCGSIADAR 369

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  M  +D  S+ +MI GL  +G   +A++ +  M +  I P   T +  LS+C+   
Sbjct: 370 RVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLK 429

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
             + G +     S    +         ++ L+   G + E   +  SMP   D   W ++
Sbjct: 430 WAKLG-QQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSI 487

Query: 501 LGA 503
           +GA
Sbjct: 488 IGA 490



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 14/311 (4%)

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H+   K  L  +VY+ N L+  Y   G   +  K+F   + P   R+ VSW  ++  Y +
Sbjct: 24  HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFD--EMPL--RNCVSWACIVSGYSR 79

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS--P 257
                EA++   DM +  +  +    V VL AC ++G  S+GI   R I    F LS   
Sbjct: 80  NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIG--SVGILFGRQIHGLMFKLSYAV 137

Query: 258 DVFIHNALIDMYLKC-GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           D  + N LI MY KC G++  A   F ++ VKN VSWNS+I+  +  G  + A  IF  M
Sbjct: 138 DAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSM 197

Query: 317 QGLGLKPDDFTLVCVLNSCANIGW--LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           Q  G +P ++T   ++ +  ++    + L + +   + K+ + TD F+G+ LV  +AK G
Sbjct: 198 QYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSG 257

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVL 433
            +  A  VF  M+ R+  +   ++VGL       +A  +F +M S + + P+  ++V +L
Sbjct: 258 SLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE--SYVILL 315

Query: 434 SACSHAGLVEE 444
           S+     L EE
Sbjct: 316 SSFPEYSLAEE 326



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 13/228 (5%)

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           L  DV++ N LI+ YL+ G+  SARKVFDEMP++N VSW  +++G +  G+ KEAL   R
Sbjct: 32  LDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLR 91

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLEL--GKWVHTYLDKNHINTDGFIGNALVDMYAK 372
            M   G+  + +  V VL +C  IG + +  G+ +H  + K     D  + N L+ MY K
Sbjct: 92  DMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWK 151

Query: 373 C-GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           C G +  A   F  ++ ++  S+ ++I   +  G    A  IFS M   G  P E TF  
Sbjct: 152 CIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGS 211

Query: 432 -VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
            V +ACS   L E       D+  +  +    +  G + DLF  +GL+
Sbjct: 212 LVTTACS---LTEP------DVRLLEQIMCTIQKSGLLTDLFVGSGLV 250


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 184/516 (35%), Positives = 292/516 (56%), Gaps = 7/516 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N +   +++L+ EM  +G+ PN +T    LKAC    +L  G Q+H + +K      V V
Sbjct: 456 NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEV 515

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N+L+ +Y+ CG I    K+F         R L+SW  +I  +V   Y ++A+ +F  M 
Sbjct: 516 GNSLVDMYSKCGRINEAEKVFR----RIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQ 571

Query: 215 QANL--RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           +AN+  RPD   L  +L ACS  G +  G +IH ++  + F+      I  +L+D+Y+KC
Sbjct: 572 EANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKC 631

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G + SARK FD++  K ++SW+S+I G    G+F EA+ +F+R+Q L  + D F L  ++
Sbjct: 632 GYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSII 691

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
              A+   L  GK +     K     +  + N++VDMY KCG +D+A   F  M+ +DV 
Sbjct: 692 GVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVI 751

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+T +I G   HG   K++ IF EM +  IEPDEV ++ VLSACSH+G+++EG + F  +
Sbjct: 752 SWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKL 811

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              + ++P+ EHY C+VDL GRAG ++EA  LI +MP+ P+  +W  LL  C++H  +EL
Sbjct: 812 LETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIEL 871

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            + V + L+R + +    Y++M+N+Y     W E    R+    + +KK  G S VE+  
Sbjct: 872 GKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIER 931

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH-GYI 607
           E + FR G+ SHP T  I + L E   + +   GY+
Sbjct: 932 EVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYV 967



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 136/263 (51%), Gaps = 12/263 (4%)

Query: 247 YITDNHFNLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
           Y  D      P  ++   N LIDMY KC     A KVFD MP +NVVSW+++++G    G
Sbjct: 398 YTDDPESETKPWLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNG 457

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
             K +L +F  M   G+ P++FT    L +C  +  LE G  +H +  K        +GN
Sbjct: 458 DLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGN 517

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE- 423
           +LVDMY+KCGRI++A  VFR +  R + S+ AMI G    G   KALD F  M +  I+ 
Sbjct: 518 SLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKE 577

Query: 424 -PDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI--- 478
            PDE T   +L ACS  G++  G + H   +   ++        G +VDL+ + G +   
Sbjct: 578 RPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSA 637

Query: 479 REALDLIKSMPLVPDAFVWGALL 501
           R+A D IK   ++     W +L+
Sbjct: 638 RKAFDQIKEKTMIS----WSSLI 656


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 210/623 (33%), Positives = 319/623 (51%), Gaps = 66/623 (10%)

Query: 35  KSVGQLKQFHAFIIKTGSPQH------------QTQILYDKIISLSRGNEIENLSLQNPQ 82
           KS+ Q KQ HA +I  G  Q+               +L D        N ++ L      
Sbjct: 95  KSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLH----- 149

Query: 83  VYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
              +N +I   + N   +EA+ +Y+ ML K + P+ YT P VLKAC +S     G +VH 
Sbjct: 150 ---WNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHR 206

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
               +++  +++V N L+ +Y   G ++    LF        +RD VSW T+I  Y    
Sbjct: 207 SIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFD----NMPRRDSVSWNTIISCYASRG 262

Query: 202 YPTEAILSFFDMCQ--------------------ANLRP--------------DGMILVI 227
              EA   F  M +                     N R               D + +V+
Sbjct: 263 IWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMVV 322

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF--IHNALIDMYLKCGNIPSARKVFDEM 285
            L+ACS +G + LG +IH +     F    DVF  + NALI MY +C ++  A  +F   
Sbjct: 323 GLNACSHIGAIKLGKEIHGHAVRTCF----DVFDNVKNALITMYSRCRDLGHAFILFHRT 378

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             K +++WN+M++G  H  +++E   +FR M   G++P+  T+  VL  CA I  L+ GK
Sbjct: 379 EEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGK 438

Query: 346 WVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
             H Y+ K+        + NALVDMY++ GR+ +A  VF S+  RD  +YT+MI+G  + 
Sbjct: 439 EFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYGMK 498

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G+    L +F EM ++ I+PD VT V VL+ACSH+GLV +G   F  M  V+ + P+ EH
Sbjct: 499 GEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEH 558

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           Y CM DLFGRAGL+ +A + I  MP  P + +W  LLGAC+IH   E+ E     L+  +
Sbjct: 559 YACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKLLEMK 618

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           P+  G Y+L+ N+Y++   W++  ++R  M+   V+K PGC+ V+V  EF  F  GD S+
Sbjct: 619 PDHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGVRKAPGCAWVDVGSEFSPFLVGDSSN 678

Query: 585 PKTLEIYKLLDEIMHQSKNHGYI 607
           P   EIY L+D +    K+ GY+
Sbjct: 679 PHASEIYPLMDGLNELMKDAGYV 701



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 188/400 (47%), Gaps = 40/400 (10%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L AC   +SL  G+Q+HA  +   L  N  + + L+  Y    L+        F     
Sbjct: 87  LLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQ----FVTESS 142

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
              D + W  LI AYV+  +  EA+  + +M    + PD      VL AC +  D + G+
Sbjct: 143 NTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGL 202

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           ++HR I  +    S  +F+HNAL+ MY + G +  AR +FD MP ++ VSWN++I+    
Sbjct: 203 EVHRSIEASSMEWS--LFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYAS 260

Query: 303 RGQFKEALDIFRRMQGLGLKP----------------------------------DDFTL 328
           RG +KEA  +F  MQ  G++                                   D   +
Sbjct: 261 RGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAM 320

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
           V  LN+C++IG ++LGK +H +  +   +    + NAL+ MY++C  +  AF +F   + 
Sbjct: 321 VVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEE 380

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           + + ++ AM+ G A   +  +   +F EM Q G+EP+ VT   VL  C+    ++ G + 
Sbjct: 381 KGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEF 440

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
              + +    +     +  +VD++ R+G + EA  +  S+
Sbjct: 441 HCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSL 480



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 118/253 (46%), Gaps = 12/253 (4%)

Query: 194 IQAYVKMDYPTEAILSFFDM------CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
           ++ +V   + T A  +FF +          L P G +L+    AC+    LS G ++H  
Sbjct: 51  LKDFVTHGHLTNAFKTFFQIQHHAASSHLLLHPIGSLLL----ACTHFKSLSQGKQLHAQ 106

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
           +     + +P   + + L++ Y     +  A+ V +     + + WN +I+     G F 
Sbjct: 107 VISLGLDQNP--ILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFV 164

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
           EAL +++ M    ++PD++T   VL +C        G  VH  ++ + +    F+ NALV
Sbjct: 165 EALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALV 224

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
            MY + G+++ A  +F +M  RD  S+  +I   A  G   +A  +F  M + G+E + +
Sbjct: 225 SMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVI 284

Query: 428 TFVGVLSACSHAG 440
            +  +   C H+G
Sbjct: 285 IWNTIAGGCLHSG 297


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 185/513 (36%), Positives = 298/513 (58%), Gaps = 12/513 (2%)

Query: 100 EAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           EAI L+ EML+  G +P+ +TL  ++  C + Q L +G+++H++ +++ L+ ++ V  +L
Sbjct: 244 EAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSL 303

Query: 159 MRLYAVCGLIKAVHKLFH-FRQHPQAQRDLVSWTTLIQAYVKMD--YPTEAILSFFDMC- 214
           + +YA CGL++   K+F   R+H     +++SWT L+  YV+    Y  EA+  F +M  
Sbjct: 304 VDMYAKCGLVQEARKVFDGMREH-----NVMSWTALVNGYVRGGGGYEREAMRMFSNMLL 358

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           Q  + P+      VL AC+ L D   G ++H         LS    + N L+ +Y K G 
Sbjct: 359 QGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIK--LGLSAIDCVGNGLVSVYAKSGR 416

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           + SARK FD +  KN+VS   +              D+ R ++ +G     FT   +L+ 
Sbjct: 417 MESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSG 476

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
            A IG +  G+ +H  + K    TD  + NAL+ MY+KCG  + A  VF  M+  +V ++
Sbjct: 477 AACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITW 536

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           T++I G A HG A KAL++F  M + G++P++VT++ VLSACSH GL++E  KHF  M  
Sbjct: 537 TSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRD 596

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            + + P+ EHY CMVDL GR+GL+ EA++ I SMP   DA VW   LG+C++H   +L E
Sbjct: 597 NHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGE 656

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
              + ++  EP     YIL++N+Y+++ RW++   +RK MK++++ K  G S +EV  + 
Sbjct: 657 HAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQV 716

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           ++F  GD  HPK  +IY+ LDE+  + KN GY+
Sbjct: 717 HKFHVGDTLHPKAQQIYEKLDELALKIKNVGYV 749



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 176/328 (53%), Gaps = 13/328 (3%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T   +LK C ++++  +G+ +H     + L  +  + N+L+ LY+       +     F+
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSN--DPITAFSIFQ 111

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD--MCQANLRPDGMILVIVLSACSKLG 236
               ++RD+VS++++I  +       +A+   FD  + Q  + P+      V+ AC K G
Sbjct: 112 SMENSKRDVVSYSSIISCFANNRNCLKAV-EMFDQLLLQDGVYPNEYCFTAVIRACLKGG 170

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK---CGNIPSARKVFDEMPVKNVVSW 293
               G+ +  ++    +     V +   LIDM++K     ++ SARKVFD+M  KNVV+W
Sbjct: 171 FFKTGLCLFGFVLKTGY-FDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTW 229

Query: 294 NSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
             MI  L   G   EA+D+F  M    G  PD FTL  +++ CA I +L LGK +H+++ 
Sbjct: 230 TLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVI 289

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW--KA 410
           ++ +  D  +G +LVDMYAKCG + +A  VF  M+  +V S+TA++ G    G  +  +A
Sbjct: 290 RSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREA 349

Query: 411 LDIFSEM-SQVGIEPDEVTFVGVLSACS 437
           + +FS M  Q G+ P+  TF GVL AC+
Sbjct: 350 MRMFSNMLLQGGVAPNCFTFSGVLKACA 377



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 130/492 (26%), Positives = 231/492 (46%), Gaps = 64/492 (13%)

Query: 62  DKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIK-GLLPNTYT 119
           D I + S    +EN       V  Y+ II C +N  N L+A+ ++ ++L++ G+ PN Y 
Sbjct: 102 DPITAFSIFQSMEN---SKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYC 158

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALL-SNVYVFNTLMRLYAV-CGL--IKAVHKLF 175
              V++AC +    + G  +  + +KT    S+V V   L+ ++   C L  +++  K+F
Sbjct: 159 FTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVF 218

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSK 234
                   ++++V+WT +I    +  Y  EAI  F +M   +   PD   L  ++S C++
Sbjct: 219 ----DKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAE 274

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           +  LSLG ++H ++  +   L  D+ +  +L+DMY KCG +  ARKVFD M   NV+SW 
Sbjct: 275 IQFLSLGKELHSWVIRS--GLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWT 332

Query: 295 SMIAGLTHRGQF--KEALDIFRRM--QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           +++ G    G    +EA+ +F  M  QG G+ P+ FT   VL +CA++   + G+ VH  
Sbjct: 333 ALVNGYVRGGGGYEREAMRMFSNMLLQG-GVAPNCFTFSGVLKACASLPDFDFGEQVHGQ 391

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV------------------- 391
             K  ++    +GN LV +YAK GR++ A   F  +  +++                   
Sbjct: 392 TIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSE 451

Query: 392 ----------------YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
                           ++Y +++ G A  G   K   I + + ++G   D      ++S 
Sbjct: 452 QDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISM 511

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM---PLVP 492
            S  G  E   + F DM     +      +  +++ F + G   +AL+L  +M    + P
Sbjct: 512 YSKCGNKEAALQVFNDMEDCNVIT-----WTSIINGFAKHGFASKALELFYNMLETGVKP 566

Query: 493 DAFVWGALLGAC 504
           +   + A+L AC
Sbjct: 567 NDVTYIAVLSAC 578


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 204/579 (35%), Positives = 315/579 (54%), Gaps = 16/579 (2%)

Query: 37  VGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNP--QVYLYNFIIQCLS 94
            G+    HA  +   +    +  L D  I  +R     N+  + P   V  +N ++   +
Sbjct: 117 AGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYA 176

Query: 95  NANPLE-AIALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN- 151
           N      AIA   +M  +G L PN  TL  +L    Q  +L  G  VHAY ++  L  N 
Sbjct: 177 NHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNE 236

Query: 152 --VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
             V +   L+ +YA C  +    ++FH        R+ V+W+ LI  +V  D  TEA   
Sbjct: 237 EQVLIGTALLDMYAKCKHLVYACRVFH----GMTVRNEVTWSALIGGFVLCDRMTEAFNL 292

Query: 210 FFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
           F DM  +         +   L  C+ L DL +G ++H  +  +   +  D+   N+L+ M
Sbjct: 293 FKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKS--GIHADLTAGNSLLSM 350

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y K G I  A  +FDE+ +K+ +S+ ++++G    G+ +EA  +F++MQ   ++PD  T+
Sbjct: 351 YAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATM 410

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
           V ++ +C+++  L+ G+  H  +    +  +  I N+L+DMYAKCGRID +  VF  M  
Sbjct: 411 VSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPA 470

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           RD+ S+  MI G  IHG   +A  +F  M   G EPD+VTF+ +++ACSH+GLV EG KH
Sbjct: 471 RDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEG-KH 529

Query: 449 FLD-MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           + D M+  Y + P+ EHY CMVDL  R G + EA   I+SMPL  D  VWGALLGAC+IH
Sbjct: 530 WFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIH 589

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
             ++L + V   + +  PEG G ++L++NI+S+  R+ EA ++R   K +  KK+PGCS 
Sbjct: 590 KNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSW 649

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           +E+ G  + F  GD+SHP + +IY  LD I+   K  GY
Sbjct: 650 IEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGY 688



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 222/453 (49%), Gaps = 14/453 (3%)

Query: 81  PQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           P    YN +I+  S   P  A I LYR ML   + PN YT P+VLKAC     L  G+ +
Sbjct: 62  PDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTI 121

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           HA++    L ++++V   L+ LY  C        +F         RD+V+W  ++  Y  
Sbjct: 122 HAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVF----AKMPMRDVVAWNAMLAGYAN 177

Query: 200 MDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
                 AI    DM  +  LRP+   LV +L   ++ G L  G  +H Y    + + + +
Sbjct: 178 HGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEE 237

Query: 259 -VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
            V I  AL+DMY KC ++  A +VF  M V+N V+W+++I G     +  EA ++F+ M 
Sbjct: 238 QVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDML 297

Query: 318 GLGLKPDDFTLVC-VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
             G+     T V   L  CA++  L +G  +H  L K+ I+ D   GN+L+ MYAK G I
Sbjct: 298 VEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLI 357

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           ++A  +F  +  +D  SY A++ G   +GKA +A  +F +M    ++PD  T V ++ AC
Sbjct: 358 NEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPAC 417

Query: 437 SHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           SH   ++ G C H   + R   L  +T     ++D++ + G I  +  +   MP   D  
Sbjct: 418 SHLAALQHGRCSHGSVIIR--GLALETSICNSLIDMYAKCGRIDLSRQVFDKMP-ARDIV 474

Query: 496 VWGALLGACKIHAKVELAEIVMENLVR--FEPE 526
            W  ++    IH   + A  +  ++    FEP+
Sbjct: 475 SWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPD 507



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 120/241 (49%), Gaps = 4/241 (1%)

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           ++ ++  G +  AR+VFD +P  +  ++N++I   + RG F  A+D++R M    + P+ 
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
           +T   VL +C+ +  L  G+ +H +     ++TD F+  AL+D+Y +C R   A  VF  
Sbjct: 100 YTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAK 159

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSHAGLVEE 444
           M  RDV ++ AM+ G A HG    A+    +M  + G+ P+  T V +L   +  G + +
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219

Query: 445 GCKHFLDMSRVYNLQPQTEHY--GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           G        R Y  Q + +      ++D++ +   +  A  +   M  V +   W AL+G
Sbjct: 220 GTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMT-VRNEVTWSALIG 278

Query: 503 A 503
            
Sbjct: 279 G 279


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 178/485 (36%), Positives = 284/485 (58%), Gaps = 7/485 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK C   + L  G+ VHA+ +++    ++ + NTL+ +YA CG ++   K+F       
Sbjct: 66  LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFE----KM 121

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            QRD V+WTTLI  Y + D P +A+L F  M +    P+   L  V+ A +       G 
Sbjct: 122 PQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGH 181

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           ++H +     F+   +V + +AL+D+Y + G +  A+ VFD +  +N VSWN++IAG   
Sbjct: 182 QLHGFCVKCGFD--SNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 239

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
           R   ++AL++F+ M   G +P  F+   +  +C++ G+LE GKWVH Y+ K+      F 
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           GN L+DMYAK G I  A  +F  +  RDV S+ +++   A HG   +A+  F EM +VGI
Sbjct: 300 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
            P+E++F+ VL+ACSH+GL++EG  H+ ++ +   + P+  HY  +VDL GRAG +  AL
Sbjct: 360 RPNEISFLSVLTACSHSGLLDEGW-HYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRAL 418

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
             I+ MP+ P A +W ALL AC++H   EL     E++   +P+  G ++++ NIY+S  
Sbjct: 419 RFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGG 478

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           RW +A ++RKKMKE  VKK P CS VE+    + F   D+ HP+  EI +  +E++ + K
Sbjct: 479 RWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIK 538

Query: 603 NHGYI 607
             GY+
Sbjct: 539 ELGYV 543



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 156/327 (47%), Gaps = 6/327 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K  SL    ++     Q   V     I     +  P +A+  + +ML  G  PN +T
Sbjct: 104 MYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT 163

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           L  V+KA    +    G Q+H + +K    SNV+V + L+ LY   GL+     +F   +
Sbjct: 164 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 223

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
                R+ VSW  LI  + +     +A+  F  M +   RP       +  ACS  G L 
Sbjct: 224 ----SRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLE 279

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G  +H Y+  +   L    F  N L+DMY K G+I  ARK+FD +  ++VVSWNS++  
Sbjct: 280 QGKWVHAYMIKSGEKLV--AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 337

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G  KEA+  F  M+ +G++P++ + + VL +C++ G L+ G   +  + K+ I  +
Sbjct: 338 YAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPE 397

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSM 386
            +    +VD+  + G +++A      M
Sbjct: 398 AWHYVTVVDLLGRAGDLNRALRFIEEM 424


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 179/474 (37%), Positives = 279/474 (58%), Gaps = 6/474 (1%)

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
           ++ +Q+H+  MK  + S+++V   L+ +Y+ C L++     F+       ++DL++W  +
Sbjct: 349 QMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL----PEKDLIAWNAI 404

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I  Y +     EA+  F +M +  +  +   L  +L + + L  + +  ++H     + F
Sbjct: 405 ISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGF 464

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
           +   D+++ N+LID Y KC ++  A ++F+E  + ++VS+ SMI      GQ +EAL +F
Sbjct: 465 H--SDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLF 522

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             MQ + LKPD F    +LN+CAN+   E GK +H ++ K     D F GN+LV+MYAKC
Sbjct: 523 LEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKC 582

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G ID A   F  +  R + S++AMI GLA HG   +AL +F++M + G+ P+ +T V VL
Sbjct: 583 GSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVL 642

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
            AC+HAGLV E   +F  M  ++  +P  EHY CM+DL GRAG I EA++L+  MP   +
Sbjct: 643 GACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEAN 702

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
           A VWGALLGA +IH  VEL     E L   EPE  G ++L+ NIY+S  +W+   ++R+ 
Sbjct: 703 ASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRL 762

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           M++ KVKK PG S +EV  + Y F  GD+SH ++ EIY  LDE+       GY+
Sbjct: 763 MRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYV 816



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/357 (31%), Positives = 182/357 (50%), Gaps = 21/357 (5%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P + +   +L  C  ++SLR G Q+HA+  K+ L  +  + N L+ LY+ C       KL
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
                 P    DLVSW+ LI  Y +      A+++F +M    ++ +      VL ACS 
Sbjct: 114 VDESSEP----DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           + DL +G ++H  +  + F    DVF+ N L+ MY KC     ++++FDE+P +NVVSWN
Sbjct: 170 VKDLRIGKQVHGVVVVSGFE--GDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWN 227

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           ++ +         EA+ +F  M   G+KP++F+L  ++N+C  +     GK +H YL K 
Sbjct: 228 ALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKL 287

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
             + D F  NALVDMYAK G +  A  VF  +K  D+ S+ A+I G  +H    +AL++ 
Sbjct: 288 GYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELL 347

Query: 415 SEMS--------QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
            +M         ++ +E D    VG++   S   L+E       D    +NL P+ +
Sbjct: 348 GQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLE-------DARMAFNLLPEKD 397



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 238/510 (46%), Gaps = 71/510 (13%)

Query: 33  SSKSVGQLKQFHAFIIKTG---SPQHQTQI--LYDKIISLSRGNEIENLSLQNPQVYLYN 87
           ++KS+    Q HA I K+G    P  +  +  LY K        ++ + S +   V    
Sbjct: 68  TTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSA 127

Query: 88  FIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
            I     N     A+  + EM + G+  N +T   VLKAC   + LR+G+QVH   + + 
Sbjct: 128 LISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSG 187

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
              +V+V NTL+ +YA C       +LF   + P+  R++VSW  L   YV+ D+  EA+
Sbjct: 188 FEGDVFVANTLVVMYAKCDEFLDSKRLF--DEIPE--RNVVSWNALFSCYVQXDFCGEAV 243

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F++M  + ++P+   L  +++AC+ L D S G  IH Y+    ++  P  F  NAL+D
Sbjct: 244 GLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP--FSANALVD 301

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY K G++  A  VF+++   ++VSWN++IAG       ++AL++  +M+          
Sbjct: 302 MYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK---------- 351

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
                            + +H+ L K  + +D F+   LVDMY+KC  ++ A   F  + 
Sbjct: 352 -----------------RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLP 394

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS---------- 437
            +D+ ++ A+I G + + +  +AL +F EM + GI  ++ T   +L + +          
Sbjct: 395 EKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQ 454

Query: 438 -HAGLVEEG-----------------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGL 477
            H   V+ G                 C H  D  R++      +   +  M+  + + G 
Sbjct: 455 VHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQ 514

Query: 478 IREALDL---IKSMPLVPDAFVWGALLGAC 504
             EAL L   ++ M L PD FV  +LL AC
Sbjct: 515 GEEALKLFLEMQDMELKPDRFVCSSLLNAC 544



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 171/358 (47%), Gaps = 18/358 (5%)

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM--DYPTEAILSFFDMCQA 216
           M+L+      K +H+  H    P  +        LIQ   +   D  T AIL+  D  + 
Sbjct: 1   MKLWRHHSFQKPLHQRLHLPFKPAPK--------LIQTVPQFSEDPQTTAILNLID--KG 50

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
           N  P  +    +LS C     L  G++IH +IT +   LS D  I N LI++Y KC    
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKS--GLSDDPSIRNHLINLYSKCRXFG 108

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            ARK+ DE    ++VSW+++I+G    G    AL  F  M  LG+K ++FT   VL +C+
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            +  L +GK VH  +  +    D F+ N LV MYAKC     +  +F  +  R+V S+ A
Sbjct: 169 IVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNA 228

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRV 455
           +           +A+ +F EM   GI+P+E +   +++AC+       G   H   +   
Sbjct: 229 LFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLG 288

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           Y+  P + +   +VD++ + G + +A+ + + +   PD   W A++  C +H   E A
Sbjct: 289 YDWDPFSAN--ALVDMYAKVGDLADAISVFEKIKQ-PDIVSWNAVIAGCVLHEHHEQA 343



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 97/201 (48%), Gaps = 6/201 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+ EM    L P+ +    +L AC    +   G+Q+H + +K   + +++  N+L+
Sbjct: 517 EALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLV 576

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I    + F        +R +VSW+ +I    +  +  +A+  F  M +  + 
Sbjct: 577 NMYAKCGSIDDAGRAF----SELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVS 632

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ + LV VL AC+  G L    K++    +  F   P    +  +ID+  + G I  A 
Sbjct: 633 PNHITLVSVLGACNHAG-LVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAV 691

Query: 280 KVFDEMPVK-NVVSWNSMIAG 299
           ++ ++MP + N   W +++  
Sbjct: 692 ELVNKMPFEANASVWGALLGA 712


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 283/472 (59%), Gaps = 9/472 (1%)

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           ++H Y +K++  ++     TL+            +  + F + P    D +++ T+I+++
Sbjct: 6   RLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSP--DTIAYNTIIRSH 63

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            +  +P+ ++  FF M    +  D      VL ACS+L    + + +H  I    + L  
Sbjct: 64  SRF-FPSHSLFYFFSMRSNGIPLDNFTFPFVLKACSRL---QINLHLHSLIVK--YGLDS 117

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           D+F+ NALI +Y  CG++  A KVFDEM  ++ VSW+++IA   + G   EALD+F +MQ
Sbjct: 118 DIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQ 177

Query: 318 -GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
               + PD+ T++ V+++ +++G LELG+WV  ++ +  +     +G AL+DM+++CG I
Sbjct: 178 LEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSI 237

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           D++  VF  M  R+V ++TA+I GL +HG++ +AL +F  M + G++PD VTF GVL AC
Sbjct: 238 DESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVAC 297

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SH GLV+EG   F  + +VY + P  +HYGCMVD+ GRAGL+ EA D ++ MP+ P++ +
Sbjct: 298 SHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSII 357

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W  LLGAC  H  + LAE V   + +     +G  +L++N+Y +  RW E   +R KM+E
Sbjct: 358 WRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMRE 417

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
           +++ K PGCS + V    +EF  GD SHP++ +I K L  I+   +N GY++
Sbjct: 418 KRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMM 469



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 170/312 (54%), Gaps = 13/312 (4%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           + +P    YN II+  S   P  ++  +  M   G+  + +T P+VLKAC     L++  
Sbjct: 48  IPSPDTIAYNTIIRSHSRFFPSHSLFYFFSMRSNGIPLDNFTFPFVLKAC---SRLQINL 104

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            +H+  +K  L S+++V N L+ +Y  CG ++   K+F       ++RD VSW+T+I ++
Sbjct: 105 HLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVF----DEMSERDSVSWSTVIASF 160

Query: 198 VKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           +   Y +EA+  F  M  +  + PD + ++ V+SA S LGDL LG  +  +I      L 
Sbjct: 161 LNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFI--GRLGLG 218

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
             V +  ALIDM+ +CG+I  +  VF++M V+NV++W ++I GL   G+  EAL +F  M
Sbjct: 219 VSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSM 278

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCG 374
           +  G++PD  T   VL +C++ G ++ G  +   + K +   D  + +   +VD+  + G
Sbjct: 279 RKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVY-RMDPLLDHYGCMVDILGRAG 337

Query: 375 RIDQAFGVFRSM 386
            +++A+     M
Sbjct: 338 LLNEAYDFVERM 349


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 189/522 (36%), Positives = 294/522 (56%), Gaps = 10/522 (1%)

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N ++ C + N    EAI  + EM+  G  P+   +  +L A      L  G++VHAY++
Sbjct: 333 WNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAV 392

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K  L S++ + NTLM +Y  C  ++   ++F   +     +D VSWTT+I  Y +    +
Sbjct: 393 KQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMR----IKDHVSWTTIIACYAQSSRYS 448

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EAI  F    +  ++ D M++  +L ACS L  +SL  ++H Y   N      D+ + N 
Sbjct: 449 EAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL---LDLILKNR 505

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           +ID+Y +CG +  A  +F+ +  K++V+W SM+      G   EA+ +F +M   G++PD
Sbjct: 506 IIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPD 565

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
              LV +L + A +  L  GK +H +L +     +G + ++LVDMY+ CG ++ A  VF 
Sbjct: 566 SVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFD 625

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
             KC+DV  +TAMI    +HG   +A+ IF  M + G+ PD V+F+ +L ACSH+ LV+E
Sbjct: 626 EAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDE 685

Query: 445 GCKHFLDM-SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           G K +LDM    Y LQP  EHY C+VDL GR+G   EA   IKSMPL P + VW ALLGA
Sbjct: 686 G-KFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGA 744

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C+IH   ELA I  + L+  EP+  G Y+L++N+++   +W    ++R KM E+ ++K P
Sbjct: 745 CRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDP 804

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
            CS +E+    + F   D SH  +  I+  L EI  + +  G
Sbjct: 805 ACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREG 846



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 155/573 (27%), Positives = 265/573 (46%), Gaps = 57/573 (9%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQ------TQIL--YDKIISLSRGNEIENLSLQNPQVYLY 86
           ++V + +Q HA  + TG+          T++L  Y K   L   + + +  +    V+ +
Sbjct: 69  RAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFD-GMPARTVFSW 127

Query: 87  NFII-QCLSNANPLEAIALYREML----IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           N +I  CLS+    EA+ +YR M     + G  P+  TL  VLKAC      R G +VH 
Sbjct: 128 NALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHG 187

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
            ++K+ L  +  V N L+ +YA CGL+ +  ++F + +     RD+ SW + I   V+  
Sbjct: 188 LAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDG---RDVASWNSAISGCVQNG 244

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI--TDNHFNLSPDV 259
              EA+  F  M       +    V VL  C++L  L+ G ++H  +      FN+    
Sbjct: 245 MFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC-- 302

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
              NAL+ MY +CG + SA +VF E+  K+ +SWNSM++       + EA+D F  M   
Sbjct: 303 ---NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQN 359

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G  PD   +V +L++  ++G L  G+ VH Y  K  +++D  I N L+DMY KC  ++ +
Sbjct: 360 GFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECS 419

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-- 437
             VF  M+ +D  S+T +I   A   +  +A+  F    + GI+ D +    +L ACS  
Sbjct: 420 ARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGL 479

Query: 438 ---------HAGLVEEGCKHFLDMSRVYNLQPQTEH------------------YGCMVD 470
                    H+  +  G    +  +R+ ++  +                     +  MV+
Sbjct: 480 KSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVN 539

Query: 471 LFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
            F   GL+ EA+ L   M    + PD+     +LGA    + +   + +   L+R +   
Sbjct: 540 CFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPV 599

Query: 528 DGAYI-LMTNIYSSKNRWKEALKLRKKMKERKV 559
           +GA +  + ++YS       ALK+  + K + V
Sbjct: 600 EGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDV 632


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 190/499 (38%), Positives = 285/499 (57%), Gaps = 15/499 (3%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN----VYVFNTLMRLYAVCGLIKA 170
           PN  TL  +L    Q  +L  G+ VHAYS++   L +    V V   L+ +YA CG +  
Sbjct: 227 PNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVY 286

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL---RPDGMILVI 227
             ++F       A R+ V+W+ L+  +V      EA   F DM    L    P    +  
Sbjct: 287 ASRVFE----AMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTS--VAS 340

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
            L AC+ L DL LG ++H  +  +   L  D+   N+L+ MY K G I  A  +FD+M V
Sbjct: 341 ALRACANLSDLCLGKQLHALLAKS--GLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVV 398

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K+ VS++++++G    G+  EA  +FR+MQ   ++PD  T+V ++ +C+++  L+ GK  
Sbjct: 399 KDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCG 458

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H  +    I ++  I NAL+DMYAKCGRID +  +F  M  RD+ S+  MI G  IHG  
Sbjct: 459 HGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLG 518

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            +A  +F +M     EPD+VTF+ ++SACSH+GLV EG + F  M+  Y + P+ EHY  
Sbjct: 519 KEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIG 578

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           MVDL  R G + EA   I+ MPL  D  VWGALLGAC++H  ++L + V   + +  PEG
Sbjct: 579 MVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEG 638

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
            G ++L++NI+S+  R+ EA ++R   KE+  KK+PGCS +E+ G  + F  GD+SH ++
Sbjct: 639 TGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQS 698

Query: 588 LEIYKLLDEIMHQSKNHGY 606
            EIY+ LD I+      GY
Sbjct: 699 SEIYQELDNILVDINKLGY 717



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 148/472 (31%), Positives = 243/472 (51%), Gaps = 20/472 (4%)

Query: 46  FIIKTGSPQHQTQILYDKII--SLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIA 103
           F++    P    QI ++++I   LS    + +  +  P ++ YN +I+  S   P  A+ 
Sbjct: 56  FMLNINFPHIICQIDHNRMICGDLSLARHLFD-QIPAPGIHDYNALIRAYSLRGPALALR 114

Query: 104 LYREMLIKGL-LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLY 162
           LYR +  + L  PN YT P+VLKAC     LR  + VH ++ +  L ++++V   L+ +Y
Sbjct: 115 LYRSLRRRRLPQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVY 174

Query: 163 AVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
           A C   +  H    FR+ P   RD+V+W  ++  Y      ++ I     M Q +  P+ 
Sbjct: 175 AKCASFR--HAATVFRRMP--ARDVVAWNAMLAGYALHGKYSDTIACLLLM-QDDHAPNA 229

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITD--NHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
             LV +L   ++ G LS G  +H Y     +  +    V +  AL+DMY KCG++  A +
Sbjct: 230 STLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASR 289

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM--QGLG-LKPDDFTLVCVLNSCAN 337
           VF+ M V+N V+W++++ G    G+  EA  +F+ M  QGL  L P   ++   L +CAN
Sbjct: 290 VFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPT--SVASALRACAN 347

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +  L LGK +H  L K+ ++TD   GN+L+ MYAK G IDQA  +F  M  +D  SY+A+
Sbjct: 348 LSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSAL 407

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVY 456
           + G   +GKA +A  +F +M    ++PD  T V ++ ACSH   ++ G C H   + R  
Sbjct: 408 VSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR-- 465

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
            +  +T     ++D++ + G I  +  +   MP   D   W  ++    IH 
Sbjct: 466 GIASETSICNALIDMYAKCGRIDLSRQIFDVMP-ARDIVSWNTMIAGYGIHG 516


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 181/501 (36%), Positives = 289/501 (57%), Gaps = 4/501 (0%)

Query: 102 IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRL 161
           ++L+ EM I+G+  ++ T+  +  +    + L++ + +H++ +K  + ++V V NT +  
Sbjct: 140 VSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAA 199

Query: 162 YAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221
           YA CG       +F      +  +  VSW ++I  Y   +  ++A+  F  M     R D
Sbjct: 200 YAKCGEFGLAETVFD--GIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRAD 257

Query: 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
              ++ +LS+C +   L  G  IH +          D+ + N LI MY KCG+I SAR +
Sbjct: 258 LSTILSLLSSCVQPEVLFHGKLIHAH--GIQVGCDSDIQVINTLISMYSKCGDIGSARYL 315

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           FD M  K  VSW +MIAG   +G   EA+ +F  M+ +G KPD  T++ +++ C   G L
Sbjct: 316 FDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGAL 375

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
           ELGKW+ TY   N +  +  + NAL+D+YAKCG +D A  +F +M  + + S+T +I G 
Sbjct: 376 ELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGC 435

Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461
           A++G+  +AL +F +M ++G++P+ +TF+ VL AC+HAG +E+G + F  M++VY + P 
Sbjct: 436 ALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPG 495

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
            +HY CM DL GR G ++EA + I++MP  PD  +W  LL ACKIH  V + E V  +L 
Sbjct: 496 LDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLF 555

Query: 522 RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581
             EP+    Y+ M NIY+S  +W     +R  MK  K  K+PG SLV+V G+ +EF   D
Sbjct: 556 ELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMKSPGKSLVQVNGKTHEFTVED 615

Query: 582 KSHPKTLEIYKLLDEIMHQSK 602
           + HP+ L IY+ L+ +  Q K
Sbjct: 616 RCHPEGLLIYETLENLALQMK 636



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 216/428 (50%), Gaps = 12/428 (2%)

Query: 89  IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I + ++     +A+ L+R+M   GL PN  T P V KAC +  +L+  Q VH + +K+  
Sbjct: 26  ITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVVKSRF 85

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            ++++V  +++ +Y  C  +   + L  F + P  +RD+ SW ++I  + ++ +    + 
Sbjct: 86  QADLFVQTSVVDMYVKCSQLGFAYNL--FSRMP--KRDVASWNSMILGFAQLGFVDRVVS 141

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F +M    +R D + ++ +  +   L DL +   IH +       +  DV + N  I  
Sbjct: 142 LFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSF--GIKIGIDTDVSVSNTWIAA 199

Query: 269 YLKCGNIPSARKVFD--EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           Y KCG    A  VFD  +  +K  VSWNSMIAG  H  Q  +A+  F++M   G + D  
Sbjct: 200 YAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLS 259

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T++ +L+SC     L  GK +H +  +   ++D  + N L+ MY+KCG I  A  +F +M
Sbjct: 260 TILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNM 319

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             +   S+TAMI G A  G   +A+ +FS M  VG +PD VT + ++S C   G +E G 
Sbjct: 320 LGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELG- 378

Query: 447 KHFLDMSRVYN-LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505
             ++D     N L+        ++D++ + G +  A +L  +MP       W  L+  C 
Sbjct: 379 -KWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP-EKSLVSWTTLIAGCA 436

Query: 506 IHAKVELA 513
           ++ + + A
Sbjct: 437 LNGEFKEA 444



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 162/368 (44%), Gaps = 43/368 (11%)

Query: 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
           +  W + I   V   Y  +A+L F  M Q  L P+ +    V  ACSKL +L     +H 
Sbjct: 19  VAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHT 78

Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
           ++  + F    D+F+  +++DMY+KC  +  A  +F  MP ++V SWNSMI G    G  
Sbjct: 79  HVVKSRFQ--ADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFV 136

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
              + +F  M   G++ D  T++ + +S  ++  L++ + +H++  K  I+TD  + N  
Sbjct: 137 DRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTW 196

Query: 367 VDMYAKCGRIDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
           +  YAKCG    A  VF  +    +   S+ +MI G A   +  KA+  F +M   G   
Sbjct: 197 IAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRA 256

Query: 425 D--------------EVTFVGVLSACSHAGLVEEGCKHFLDM---------------SRV 455
           D              EV F G L    HA  ++ GC   + +               S  
Sbjct: 257 DLSTILSLLSSCVQPEVLFHGKL---IHAHGIQVGCDSDIQVINTLISMYSKCGDIGSAR 313

Query: 456 Y---NLQPQTE-HYGCMVDLFGRAGLIREALDLIKSMPLV---PDAFVWGALLGACKIHA 508
           Y   N+  +T   +  M+  +   G + EA+ L  +M  V   PD     +L+  C    
Sbjct: 314 YLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTG 373

Query: 509 KVELAEIV 516
            +EL + +
Sbjct: 374 ALELGKWI 381



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 90/158 (56%), Gaps = 1/158 (0%)

Query: 276 PSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           P+A + F+    +  V  WNS I    ++G   +AL +FR+M+  GL+P++ T   V  +
Sbjct: 4   PAATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKA 63

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           C+ +  L+  + VHT++ K+    D F+  ++VDMY KC ++  A+ +F  M  RDV S+
Sbjct: 64  CSKLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASW 123

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
            +MI+G A  G   + + +F EM   GI  D VT +G+
Sbjct: 124 NSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGL 161



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 10/141 (7%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K  S+    E+     +   V     I  C  N    EA+ L+ +M+  GL PN  T
Sbjct: 403 VYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHIT 462

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYA----VCGLIKAVHKLF 175
              VL+AC  +  L  G +         L++ VY  N  +  Y+    + G    + + F
Sbjct: 463 FLAVLQACNHAGFLEKGWECF------NLMTKVYKINPGLDHYSCMADLLGRKGRLKEAF 516

Query: 176 HFRQHPQAQRDLVSWTTLIQA 196
            F Q+   + D+  W+ L+ A
Sbjct: 517 EFIQNMPFKPDVGIWSVLLSA 537


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 185/511 (36%), Positives = 285/511 (55%), Gaps = 6/511 (1%)

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           N   A  ++ EM+ + L PN +T+  VLKAC   + L  G+ VH  ++K  L   +YV N
Sbjct: 73  NHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDN 132

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            LM +YA C  +        FR      ++ VSWTTLI  Y   D     +  F  M   
Sbjct: 133 ALMDMYATC-CVSMDDACMVFRG--IHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLE 189

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            +  +     I + AC+ +G  + G ++H  +T + F    ++ + N+++DMY +C    
Sbjct: 190 EVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGF--ESNLPVMNSILDMYCRCSCFS 247

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A + F EM  +++++WN++IAG   R    E+L +F  M+  G  P+ FT   ++ +CA
Sbjct: 248 EANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACA 306

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            + +L  G+ +H  + +  ++ +  + NAL+DMY+KCG I  +  VF  M  RD+ S+TA
Sbjct: 307 TLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTA 366

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           M++G   HG   +A+++F +M + GI PD V F+ +LSACSHAGLV+EG ++F  M   Y
Sbjct: 367 MMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDY 426

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
           N+ P  E YGC+VDL GRAG + EA +LI+SMP  PD  VWG  LGACK H    L ++ 
Sbjct: 427 NISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLA 486

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
              ++   P   G Y++++NIY++  +W E  +LRK MK    KK  G S VEV    Y 
Sbjct: 487 AHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVYS 546

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           F  GD+   K   IY++L+ ++   K  GY+
Sbjct: 547 FVVGDEVGSKIEGIYQVLENLIGHMKESGYV 577



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 11/253 (4%)

Query: 41  KQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           +Q HA + K G   +   +     +Y +    S  N      +    +  +N +I     
Sbjct: 215 EQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRY-FYEMNQRDLITWNTLIAGYER 273

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           +NP E++ ++  M  +G  PN +T   ++ AC     L  GQQ+H   ++  L  N+ + 
Sbjct: 274 SNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALS 333

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ +Y+ CG I   H++F       ++RDLVSWT ++  Y    Y  EA+  F  M +
Sbjct: 334 NALIDMYSKCGNIADSHQVF----GGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVR 389

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
           + +RPD ++ + +LSACS  G +  G++  + +  + +N+SPD  I+  ++D+  + G +
Sbjct: 390 SGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGD-YNISPDQEIYGCVVDLLGRAGKV 448

Query: 276 PSARKVFDEMPVK 288
             A ++ + MP K
Sbjct: 449 EEAYELIESMPFK 461



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 128/306 (41%), Gaps = 34/306 (11%)

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K ++    MIAG T       A  +F  M    L P+ FT+  VL +C  +  L  G+ V
Sbjct: 56  KGLIGEALMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLV 115

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCG-RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           H    K+ ++   ++ NAL+DMYA C   +D A  VFR +  ++  S+T +I G      
Sbjct: 116 HGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDD 175

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGLVEEG---------- 445
            +  L +F +M    +E +  +F   + AC+           HA + + G          
Sbjct: 176 GYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNS 235

Query: 446 -------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIRE--ALDLIKSMPLVPDA 494
                  C  F + +R +    Q +   +  ++  + R+          +++S    P+ 
Sbjct: 236 ILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPTESLYVFSMMESEGFSPNC 295

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI-LMTNIYSSKNRWKEALKLRKK 553
           F + +++ AC   A +   + +   ++R   +G+ A    + ++YS      ++ ++   
Sbjct: 296 FTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGG 355

Query: 554 MKERKV 559
           M  R +
Sbjct: 356 MSRRDL 361


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 180/514 (35%), Positives = 294/514 (57%), Gaps = 8/514 (1%)

Query: 95  NANPLEAIALYREMLI-KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
           N +P  A+A +  M++ + + P+  TL     AC Q     +G+ VH +  +    + + 
Sbjct: 184 NGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLC 243

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           + N+++ LY   G I++   LF  R+ P   +D++SW++++  Y      T A+  F +M
Sbjct: 244 LANSILNLYGKTGSIRSAANLF--REMPY--KDIISWSSMVACYADNGAETNALNLFNEM 299

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
               +  + + ++  L AC+   +L  G  IH+   +  F L  D+ +  AL+DMY+KC 
Sbjct: 300 IDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFEL--DITVSTALMDMYMKCF 357

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
           +  +A  +F+ MP K+VVSW  + +G    G   ++L +F  M   G +PD   LV +L 
Sbjct: 358 SPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILA 417

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           + + +G ++    +H ++ K+  + + FIG +L+++YAKC  ID A  VF+ M+ +DV +
Sbjct: 418 ASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVT 477

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMS-QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           ++++I     HG+  +AL +F +MS    ++P++VTFV +LSACSHAGL+EEG K F  M
Sbjct: 478 WSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVM 537

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              Y L P TEHYG MVDL GR G + +ALD+I  MP+     VWGALLGAC+IH  +++
Sbjct: 538 VNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKI 597

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            E+   NL   +P   G Y L++NIY     W +A KLR  +KE + KK  G S+VE+  
Sbjct: 598 GELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEIKN 657

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           E + F   D+ H ++ +IY +L ++  + K  GY
Sbjct: 658 EVHSFIASDRFHGESDQIYGMLRKLDARMKEEGY 691



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 144/499 (28%), Positives = 249/499 (49%), Gaps = 31/499 (6%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQH-----QTQILYDKIISLSRGNEIENLSLQNP--QV 83
           LE+  S   + Q H+  +K G         +  +LY +  SL   ++   L  + P   V
Sbjct: 11  LETCCSKISIPQLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHK---LFEETPCKTV 67

Query: 84  YLYNFIIQC-LSNANPLEAIALYREMLIKGLL---PNTYTLPYVLKACWQSQSLRVGQQV 139
           YL+N +++        +E ++L+ +M    +    P+ YT+   LK+C   Q L +G+ +
Sbjct: 68  YLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMI 127

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H +  K  + ++++V + L+ LY+ CG +    K+  F ++P  ++D+V WT++I  Y +
Sbjct: 128 HGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKV--FTEYP--KQDVVLWTSIITGYEQ 183

Query: 200 MDYPTEAILSFFD--MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
              P E  L+FF   +    + PD + LV   SAC++L D +LG  +H ++    F+   
Sbjct: 184 NGSP-ELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFD--T 240

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
            + + N+++++Y K G+I SA  +F EMP K+++SW+SM+A     G    AL++F  M 
Sbjct: 241 KLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMI 300

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              ++ +  T++  L +CA+   LE GK +H          D  +  AL+DMY KC    
Sbjct: 301 DKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPK 360

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A  +F  M  +DV S+  +  G A  G A K+L +F  M   G  PD +  V +L+A S
Sbjct: 361 NAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASS 420

Query: 438 HAGLVEEG-CKH-FLDMSRVYNLQPQTEHYGC-MVDLFGRAGLIREALDLIKSMPLVPDA 494
             G+V++  C H F+  S   N     E  G  +++L+ +   I  A  + K M    D 
Sbjct: 421 ELGIVQQALCLHAFVSKSGFDN----NEFIGASLIELYAKCSSIDNANKVFKGMRR-KDV 475

Query: 495 FVWGALLGACKIHAKVELA 513
             W +++ A   H + E A
Sbjct: 476 VTWSSIIAAYGFHGQGEEA 494


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 198/561 (35%), Positives = 317/561 (56%), Gaps = 22/561 (3%)

Query: 63  KIISLSRGNEIENLS------LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLP 115
           +++   R  E +NL+      +    V+ +N +I  L+ + +  EA+  +  M    L P
Sbjct: 15  RLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYP 74

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
              + P  +KAC     +  G+Q H  +      S+++V + L+ +Y+ CG ++   K+F
Sbjct: 75  TRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVF 134

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMIL-----VIVL 229
              + P+  RD+VSWT++I+ Y       +A+  F D+    N   D M L     V V+
Sbjct: 135 D--EIPK--RDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVI 190

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG--NIPSARKVFDEMPV 287
           SACS++    L   IH ++    F+    V + N L+D Y K G   +  ARK+FD++  
Sbjct: 191 SACSRVPAKGLTESIHSFVIKRGFDRG--VSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
           K+ VS+NS+++     G   EA ++FRR+ +   +  +  TL  VL + ++ G L +GK 
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           +H  + +  +  D  +G +++DMY KCGR++ A   F  MK ++V S+TAMI G  +HG 
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGH 368

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
           A KAL++F  M   G+ P+ +TFV VL+ACSHAGL  EG + F  M   + ++P  EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG 428

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CMVDL GRAG +++A DLI+ M + PD+ +W +LL AC+IH  VELAEI +  L   +  
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSS 488

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
             G Y+L+++IY+   RWK+  ++R  MK R + K PG SL+E+ GE + F  GD+ HP+
Sbjct: 489 NCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQ 548

Query: 587 TLEIYKLLDEIMHQSKNHGYI 607
             +IY+ L E+  +    GY+
Sbjct: 549 REKIYEFLAELNRKLLEAGYV 569


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 191/520 (36%), Positives = 287/520 (55%), Gaps = 47/520 (9%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALL--SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
           +L +C    + R   ++HA  ++T LL  ++  V   L R YA  G +     L    + 
Sbjct: 295 LLTSC---STARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRD 351

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
           P A    + +T+ I A+    +   A+    DM    L P    L   L AC  L   S 
Sbjct: 352 PTA----IFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGL---SP 404

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM--------------- 285
           G  +H Y       L+ D ++  AL+ MY + G+  +AR +FD+M               
Sbjct: 405 GRALHGYAF--KLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTC 462

Query: 286 -----------------PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
                            P K+ V WN+MI G T  G+  EAL +FRRM G G++PD+ T+
Sbjct: 463 YADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTV 522

Query: 329 VCVLNSCANIGWLELGKWVHTYL-DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           V VL++ A +G +E GKW+H+Y+ +   +     +G AL+DMY KCG +  A  VF  + 
Sbjct: 523 VLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIG 582

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            +D+  + AMI G A+HG + KAL++F +  + G+ P ++TF+G+L+ACSH+G+VEEG +
Sbjct: 583 DKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGRE 642

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
            F  M R Y + P+ EHYGCMVDL GRAGLI+EA  L++SM + PDA +W +LL AC++H
Sbjct: 643 FFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLH 702

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
             + L + + + LV       G YIL++NIY++   W E  ++R  MK   ++K PGCS 
Sbjct: 703 KNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSS 762

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +E+  E YEF  GD SHP+T EIY +LD++    K HG++
Sbjct: 763 IEIDREVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHV 802



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 195/414 (47%), Gaps = 47/414 (11%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL------QNPQVY 84
           L S  +  +  + HA +++TG      + +  ++      +   +LSL      ++P   
Sbjct: 296 LTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAI 355

Query: 85  LYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            Y   I   S+  + L A+AL  +ML +GLLP  +TL   L AC   + L  G+ +H Y+
Sbjct: 356 FYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPAC---RGLSPGRALHGYA 412

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------------------------- 176
            K AL  + YV   L+ +YA  G   A   LF                            
Sbjct: 413 FKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDA 472

Query: 177 ---FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
              F   P   +D V W  +I  Y +   P EA+  F  M  + + PD + +V+VLSA +
Sbjct: 473 RSLFDGLPT--KDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVA 530

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
           +LG +  G  +H Y+  N   +   V +  ALIDMY KCG++  A  VF  +  K++V W
Sbjct: 531 QLGTVESGKWLHSYVK-NSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVW 589

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           N+MI G    G  ++AL++F + +  GL P D T + +LN+C++ G +E G+     +++
Sbjct: 590 NAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMER 649

Query: 354 NHINTDGFIGN--ALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIH 404
            +   D  I +   +VD+  + G I +AF + +SMK   D   + +++    +H
Sbjct: 650 EY-GIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLH 702


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 203/617 (32%), Positives = 327/617 (52%), Gaps = 38/617 (6%)

Query: 20  QQLSLLHQSPRLESS------------KSVGQLKQFHAFIIKTGSPQHQTQIL------- 60
           + LS + +  ++ES+            K V   ++ HA I+KTG+  H+   L       
Sbjct: 56  EALSFIREGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGA--HKDAFLMTFLVNV 113

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTL 120
           Y K  ++    ++ +   +   V     +   + ++ P  A+ ++REML  G  P  YTL
Sbjct: 114 YAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTL 173

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
              L A     S  +G+Q+H YS+K  +  +  + N+L  LY+ CG ++   K F   + 
Sbjct: 174 GTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIR- 232

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
               ++++SWTT+I A+         +  F +M    + P+   L   LS C  +  L +
Sbjct: 233 ---DKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDI 289

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G +IH       F    ++ I N+++ +YLKCG I  A+K+FDEM   ++V+WN+MIAG 
Sbjct: 290 GTQIHSLTIKLGFE--SNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGH 347

Query: 301 THRGQF-----------KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
                F            EAL IF ++   G+KPD FT   VL+ C+++  LE G+ VH 
Sbjct: 348 ARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHA 407

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
              K    +D  +G ALV+MY KCG I++A   F  M  R + S+T+MI G A +G+  +
Sbjct: 408 QTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQ 467

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           AL +F +M   G+ P+++TFVGVLSACSHAG+V+E   +F  M   Y + P  +HY C++
Sbjct: 468 ALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLI 527

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           D+F R G + EA D IK M L P+ F+W  L+  C+   K+EL     E L+  +P+   
Sbjct: 528 DMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKPKDTE 587

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y L+ N+Y S  +WKE  ++RK MKE K+ +    S + +  + Y F++  +SH ++ E
Sbjct: 588 TYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARSHAQSGE 647

Query: 590 IYKLLDEIMHQSKNHGY 606
           +Y+LL  +  ++K+ GY
Sbjct: 648 MYELLGNLHEKAKSFGY 664


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 175/507 (34%), Positives = 290/507 (57%), Gaps = 8/507 (1%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           ++ L+ +M I G +P+  ++   ++AC QS  L+VG+ VH Y + +    +    N L+ 
Sbjct: 307 SVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILID 365

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +YA CG + A  ++F   +     +D V+W +LI  Y +  Y  E + SF  M +   +P
Sbjct: 366 MYAKCGDLLAAQEVFDTTKC----KDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKP 420

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D +  V++LS  S+L D++ G  IH  +    F    ++ I N+L+D+Y KCG +    K
Sbjct: 421 DSVTFVLLLSIFSQLADINQGRGIHCDVI--KFGFEAELIIGNSLLDVYAKCGEMDDLLK 478

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VF  M   +++SWN++IA   H         +   M+  GL PD+ T++ +L  C+ +  
Sbjct: 479 VFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAV 538

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
              GK +H Y+ K+   ++  IGNAL++MY+KCG ++    VF+ MK +DV ++TA+I  
Sbjct: 539 RRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISA 598

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
             ++G+  KAL  F +M   G+ PD V F+  + ACSH+G+V+EG + F  M   YNL+P
Sbjct: 599 FGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEP 658

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
           + EHY C+VDL  R+GL+ +A + I SMP+ PDA +WGALL AC+      +A+ V + +
Sbjct: 659 RMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKI 718

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
           +    +  G Y+L++NIY++  +W +   +R  MK + +KK PG S +E+    Y FR G
Sbjct: 719 LELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTG 778

Query: 581 DKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           DKS  +  ++  LL+ ++      GY+
Sbjct: 779 DKSFEQYDKVKDLLEYLVRLMAKEGYV 805



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 241/486 (49%), Gaps = 23/486 (4%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS--------LSRGNEIENLSLQNPQ 82
           L S+K+  QL+  H+ II +G     + I   K+IS        +S  +   ++S  N  
Sbjct: 29  LSSAKNTPQLRTVHSLIITSG--LSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTN-N 85

Query: 83  VYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           VYL+N II+ L+ N    +A+  Y EM  K L P+ +T P V+ +C +   L +G  VH 
Sbjct: 86  VYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHE 145

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           ++M+    S++Y+ N L+ +Y+    +     +F       + RD VSW +LI  Y    
Sbjct: 146 HAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF----EEMSNRDSVSWNSLISGYCSNG 201

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           +  +A+  +       + PD   +  VL AC  L  +  G+ +H  I      ++ DV I
Sbjct: 202 FWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVI--EKIGIAGDVII 259

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            N L+ MY K   +  AR+VF +M VK+ V+WN+MI G    G+ + ++ +F  M   G 
Sbjct: 260 GNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GF 318

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
            PD  ++   + +C   G L++GK+VH YL  +    D    N L+DMYAKCG +  A  
Sbjct: 319 VPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQE 378

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF + KC+D  ++ ++I G    G   + L+ F +M ++  +PD VTFV +LS  S    
Sbjct: 379 VFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLAD 437

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           + +G     D+ + +  + +      ++D++ + G + + L +   M    D   W  ++
Sbjct: 438 INQGRGIHCDVIK-FGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMS-AHDIISWNTVI 495

Query: 502 GACKIH 507
            A  +H
Sbjct: 496 -ASSVH 500


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 183/507 (36%), Positives = 287/507 (56%), Gaps = 6/507 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EAI ++ +M+  G+  ++ T+  VL    + Q L +G  +   +MK    S+ YV   L 
Sbjct: 190 EAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLA 249

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY+ CG I+    LF     P    DLVS+  +I  Y   +    ++  F ++  +  +
Sbjct: 250 CLYSKCGEIETARLLFGQIGQP----DLVSYNAMISGYTCNNETESSVRLFKELLVSGEK 305

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            +   +V ++      G L L   IH + T +   +  +  +  AL  +Y +   I SAR
Sbjct: 306 VNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKS--GVVSNSSVSTALTTVYSRLNEIESAR 363

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +FDE   K++ SWN+MI+G    G  ++A+ +F+ MQ   ++P+  T+  +L++CA +G
Sbjct: 364 LLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLG 423

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L LGKWVH  +++    ++ F+  AL+DMYAKCG I +A  +F  M  ++  ++ AMI 
Sbjct: 424 ALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMIS 483

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G  +HG   +AL++F+EM    + P  VTF+ VL ACSHAGLV EG + F  M   +  +
Sbjct: 484 GYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFE 543

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  EHY CMVDL GRAG + +ALD I+ MP+ P   VWGALLGAC IH    LA +  + 
Sbjct: 544 PLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDK 603

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L   +P+  G Y+L++NIYS+   + EA  +R  +K RK+ KTPGC+L+EV    + F  
Sbjct: 604 LFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTS 663

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           GD+SHP+   IY +L+++  + +  G+
Sbjct: 664 GDQSHPQATAIYAMLEKLTGKMREAGF 690



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 233/478 (48%), Gaps = 21/478 (4%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKII-SLSRGNEIENLSL-----QNPQVYLYNFIIQC 92
           QL Q HA II  G   H   +   K+   LS    I+  SL      NP ++LYN +I+ 
Sbjct: 25  QLNQTHAQIILNG--LHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRA 82

Query: 93  LS-NANPLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
            S N +P  A++LY  +     L P+ +T  +V+     + SL +G  +HA+S+     S
Sbjct: 83  FSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVIS---GASSLGLGLLLHAHSIVAGFGS 139

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           +++V + ++  Y     + A  K+F        +RD V W T++   VK     EAIL F
Sbjct: 140 DLFVGSAIVACYFKFSRVAAARKVF----DGMLERDTVLWNTMVSGLVKNSCFDEAILIF 195

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
            DM +  +  D   +  VL   ++L DL+LG+ I        F+     ++   L  +Y 
Sbjct: 196 GDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFH--SHAYVITGLACLYS 253

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG I +AR +F ++   ++VS+N+MI+G T   + + ++ +F+ +   G K +  ++V 
Sbjct: 254 KCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVG 313

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           ++      G L L + +H +  K+ + ++  +  AL  +Y++   I+ A  +F     + 
Sbjct: 314 LIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKS 373

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           + S+ AMI G A +G   KA+ +F EM +  + P+ VT   +LSAC+  G +  G K   
Sbjct: 374 LASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWVH 432

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           D+    + +        ++D++ + G I EA  L   MP   +A  W A++    +H 
Sbjct: 433 DLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLHG 489


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 177/510 (34%), Positives = 297/510 (58%), Gaps = 9/510 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E++  + EM+  G+LP+  T   +L +  + ++L   +Q+H Y M+ ++  ++++ + L+
Sbjct: 323 ESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALI 382

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQR-DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
             Y  C  +     +F      Q    D+V +T +I  Y+      +++  F  + +  +
Sbjct: 383 DAYFKCRGVSMAQNIFS-----QCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKI 437

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            P+ + LV +L     L  L LG ++H +I    F+   +  I  A+IDMY KCG +  A
Sbjct: 438 SPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCN--IGCAVIDMYAKCGRMNLA 495

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
            ++F+ +  +++VSWNSMI           A+DIFR+M   G+  D  ++   L++CAN+
Sbjct: 496 YEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANL 555

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
                GK +H ++ K+ + +D +  + L+DMYAKCG +  A  VF++MK +++ S+ ++I
Sbjct: 556 PSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSII 615

Query: 399 VGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
                HGK   +L +F EM  + GI PD++TF+ ++S+C H G V+EG + F  M+  Y 
Sbjct: 616 AACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYG 675

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           +QPQ EHY C+VDLFGRAG + EA + +KSMP  PDA VWG LLGAC++H  VELAE+  
Sbjct: 676 IQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVAS 735

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
             L+  +P   G Y+L++N +++   W+   K+R  MKER+V+K PG S +E+    + F
Sbjct: 736 SKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLF 795

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             GD +HP++  IY LL+ ++ + +  GYI
Sbjct: 796 VSGDVNHPESSHIYSLLNSLLGELRLEGYI 825



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 138/509 (27%), Positives = 236/509 (46%), Gaps = 21/509 (4%)

Query: 5   LTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIK---TGSPQHQTQIL- 60
           L + + SR+ +    ++LSLL Q+    +   + Q KQ HAF+I    +G      +IL 
Sbjct: 21  LPLRNSSRFLEETIPRRLSLLLQA--CSNPNLLRQGKQVHAFLIVNSISGDSYTDERILG 78

Query: 61  -YDKIISLSR-GNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNT 117
            Y    S S  G     L L+   +  +N II        L +A+A Y +ML  G+ P+ 
Sbjct: 79  MYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDV 138

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
            T P ++KAC   ++ +    +        +  N +V ++L++ Y   G I    KLF  
Sbjct: 139 STFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFD- 197

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
                 Q+D V W  ++  Y K       I  F  M    + P+ +    VLS C+    
Sbjct: 198 ---RVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLL 254

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           + LG+++H  +  +  +      I N+L+ MY KCG    A K+F  M   + V+WN MI
Sbjct: 255 IDLGVQLHGLVVVSGVDFEGS--IKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMI 312

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
           +G    G  +E+L  F  M   G+ PD  T   +L S +    LE  K +H Y+ ++ I+
Sbjct: 313 SGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSIS 372

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            D F+ +AL+D Y KC  +  A  +F      DV  +TAMI G   +G    +L++F  +
Sbjct: 373 LDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWL 432

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGC-MVDLFGRA 475
            +V I P+E+T V +L        ++ G + H   + + ++      + GC ++D++ + 
Sbjct: 433 VKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFD---NRCNIGCAVIDMYAKC 489

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G +  A ++ + +    D   W +++  C
Sbjct: 490 GRMNLAYEIFERLS-KRDIVSWNSMITRC 517



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 133/254 (52%), Gaps = 15/254 (5%)

Query: 41  KQFHAFIIKTGSPQHQTQI------LYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCL 93
           ++ H FIIK G   ++  I      +Y K   ++   EI E LS ++  V   + I +C 
Sbjct: 461 RELHGFIIKKGF-DNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRD-IVSWNSMITRCA 518

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
            + NP  AI ++R+M + G+  +  ++   L AC    S   G+ +H + +K +L S+VY
Sbjct: 519 QSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVY 578

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
             +TL+ +YA CG +KA   +F        ++++VSW ++I A        +++  F +M
Sbjct: 579 SESTLIDMYAKCGNLKAAMNVF----KTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEM 634

Query: 214 CQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
            + + +RPD +  + ++S+C  +GD+  G++  R +T++ + + P    +  ++D++ + 
Sbjct: 635 VEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTED-YGIQPQQEHYACVVDLFGRA 693

Query: 273 GNIPSARKVFDEMP 286
           G +  A +    MP
Sbjct: 694 GRLTEAYETVKSMP 707


>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 540

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 188/519 (36%), Positives = 288/519 (55%), Gaps = 51/519 (9%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC-----GLIKAVHKLFHFRQHPQA 183
           Q ++LR  ++ H   +K+  L     +  + RL  VC     G       +FH  ++P  
Sbjct: 27  QCKNLRELKKTHTQILKSPTLHTGDQYYLITRLLYVCSFSYYGSFSYATNVFHMIKNP-- 84

Query: 184 QRDLVSWTTLIQAYVKMD-----YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
             DL ++  +I+AY+ M+     +  +A++ +  M   ++ P+ +    +L  C++  D 
Sbjct: 85  --DLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIVPNCLTFPFLLKGCTQWLDG 142

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
           + G  IH  +    F    DV++ N+LI +Y+  G + +ARKVFDEM V +VV+WNSM+ 
Sbjct: 143 ATGQAIHTQVIK--FGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLVTDVVTWNSMVI 200

Query: 299 GLTHRGQFKEALDIFRRMQGLGL----------------------------------KPD 324
           G    G    A+D+FR+M G  +                                  KPD
Sbjct: 201 GCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPD 260

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             T+  VL++CA +G ++ GKWVH YL +N I  D  IG ALV+MY KCG + +AF +F 
Sbjct: 261 KITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFE 320

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            M  +D  ++T MI   A+HG  WKA + F EM + G++P+ VTFVG+LSAC+H+GLVE+
Sbjct: 321 EMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQ 380

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G   F  M RVY+++PQ  HY CMVD+  RA L  E+  LI+SMP+ PD +VWGALLG C
Sbjct: 381 GRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKPDVYVWGALLGGC 440

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV-KKTP 563
           ++H  VEL E V+ +L+  EP     Y+   +IY+    +  A ++R  MKE+++ KK P
Sbjct: 441 QMHGNVELGEKVVHHLIDLEPHNHAFYVNWCDIYAKAGMFDAAKRIRNIMKEKRIEKKIP 500

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           GCS++E+ GE  EF  G  S     E+  +L+ + ++ K
Sbjct: 501 GCSMIEINGEVQEFSAGGSSELPMKELVLVLNGLSNEMK 539



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 218/444 (49%), Gaps = 58/444 (13%)

Query: 15  DINTFQQLSLLHQ---SPRLESSKSVGQLKQFHAFIIK-----TGSPQHQ-TQILY---- 61
           +  T + LSL  +   S  +E  K++ +LK+ H  I+K     TG   +  T++LY    
Sbjct: 6   EFKTVESLSLTLRNTLSRLIEQCKNLRELKKTHTQILKSPTLHTGDQYYLITRLLYVCSF 65

Query: 62  DKIISLSRGNEIENLSLQNPQVYLYNFIIQCL------SNANPLEAIALYREMLIKGLLP 115
               S S    + ++ ++NP +  YN +I+         + +  +A+ LY++M  K ++P
Sbjct: 66  SYYGSFSYATNVFHM-IKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIVP 124

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           N  T P++LK C Q      GQ +H   +K   L +VYV N+L+ LY   GL+    K+F
Sbjct: 125 NCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVF 184

Query: 176 H-----------------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
                                         FR+     R++++W ++I    +     E+
Sbjct: 185 DEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRK--MNGRNIITWNSIITGLAQGGSAKES 242

Query: 207 ILSFFDM---CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
           +  F +M       ++PD + +  VLSAC++LG +  G  +H Y+  N   +  DV I  
Sbjct: 243 LELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRN--GIECDVVIGT 300

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL++MY KCG++  A ++F+EMP K+  +W  MI+     G   +A + F  M+  G+KP
Sbjct: 301 ALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKP 360

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGV 382
           +  T V +L++CA+ G +E G+W    + + + I    +    +VD+ ++    D++  +
Sbjct: 361 NHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEIL 420

Query: 383 FRSMKCR-DVYSYTAMIVGLAIHG 405
            RSM  + DVY + A++ G  +HG
Sbjct: 421 IRSMPMKPDVYVWGALLGGCQMHG 444


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 199/572 (34%), Positives = 297/572 (51%), Gaps = 8/572 (1%)

Query: 41  KQFHAFIIKTGSPQH---QTQIL--YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           K  HA I+  G   H    T +L  Y K+ S+     + N+  ++ QV     I  C SN
Sbjct: 241 KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN 300

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
              LEA  L+  M      PN YTL  V KA  +   + +G++V   + +  +  NV V 
Sbjct: 301 GLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVG 360

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
             L+ +Y+ CG +     +F              W  +I  Y +     EA+  +  MCQ
Sbjct: 361 TALIDMYSKCGSLHDARSVFDTNFINCGVN--TPWNAMISGYSQSGCSQEALELYVQMCQ 418

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             +  D      V +A +    L  G  +H  +     +L   V ++NA+ D Y KCG +
Sbjct: 419 NGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMV-VSVNNAIADAYSKCGFL 477

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
              RKVFD M  +++VSW +++   +     +EAL  F  M+  G  P+ FT   VL SC
Sbjct: 478 EDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISC 537

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A++ +LE G+ VH  L K  ++T+  I +AL+DMYAKCG I +A  VF  +   D+ S+T
Sbjct: 538 ASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWT 597

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           A+I G A HG    AL +F  M   GI+ + VT + VL ACSH G+VEEG  +F  M   
Sbjct: 598 AIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDG 657

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           Y + P+ EHY C++DL GR G + +A++ I+ MP+ P+  VW  LLG C++H  VEL EI
Sbjct: 658 YGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEI 717

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
               ++   PE    Y+L++N Y     +++ L LR  MK++ VKK PG S + V G  +
Sbjct: 718 AARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVH 777

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +F  GD+ HP+  EIY  L+E+  + K  GY+
Sbjct: 778 KFYSGDQQHPQKKEIYVKLEELREKIKAMGYV 809



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 233/496 (46%), Gaps = 34/496 (6%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIE---NLSLQNPQVYLYNFIIQ 91
           S+ + K  H  ++K+        +L++    + S+ +E      +  + PQ  ++++ + 
Sbjct: 133 SIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVM 192

Query: 92  CLSNANP---LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
            + +       +    + EML  G+LP+ +    ++++C    SL +G+ VHA  +    
Sbjct: 193 IVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGF 252

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFH-FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
            ++++V  +L+ +YA  G I+  + +F+   +H Q     VSW  +I          EA 
Sbjct: 253 ATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQ-----VSWNAMISGCTSNGLHLEAF 307

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F  M      P+   LV V  A  KL D+++G ++    ++    +  +V +  ALID
Sbjct: 308 DLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASE--LGIEGNVLVGTALID 365

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVS--WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           MY KCG++  AR VFD   +   V+  WN+MI+G +  G  +EAL+++ +M   G+  D 
Sbjct: 366 MYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDL 425

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF-IGNALVDMYAKCGRIDQAFGVFR 384
           +T   V N+ A    L+ G+ VH  + K  ++     + NA+ D Y+KCG ++    VF 
Sbjct: 426 YTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFD 485

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            M+ RD+ S+T ++   +      +AL  F  M + G  P++ TF  VL +C+    +E 
Sbjct: 486 RMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEY 545

Query: 445 G-------CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           G       CK  LD  +             ++D++ + G I EA  +   +   PD   W
Sbjct: 546 GRQVHGLLCKAGLDTEKCIE--------SALIDMYAKCGSITEAGKVFDKIS-NPDIVSW 596

Query: 498 GALLGACKIHAKVELA 513
            A++     H  VE A
Sbjct: 597 TAIISGYAQHGLVEDA 612



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 119/257 (46%), Gaps = 1/257 (0%)

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           L+ VL  C++ G +     +H  +  ++F     + + N    +Y KC    +A  VFDE
Sbjct: 121 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 180

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           MP +NV SW  MI G T  G F +    F  M   G+ PD F    ++ SC  +  LELG
Sbjct: 181 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELG 240

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           K VH  +      T  F+  +L++MYAK G I+ ++ VF  M   +  S+ AMI G   +
Sbjct: 241 KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN 300

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G   +A D+F  M      P+  T V V  A      V  G K   + +    ++     
Sbjct: 301 GLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMG-KEVQNCASELGIEGNVLV 359

Query: 465 YGCMVDLFGRAGLIREA 481
              ++D++ + G + +A
Sbjct: 360 GTALIDMYSKCGSLHDA 376


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 185/511 (36%), Positives = 285/511 (55%), Gaps = 6/511 (1%)

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           N   A  ++ EM+ + L PN +T+  VLKAC   + L  G+ VH  ++K  L   +YV N
Sbjct: 89  NHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDN 148

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            LM +YA C  +        FR      ++ VSWTTLI  Y   D     +  F  M   
Sbjct: 149 ALMDMYATC-CVSMDDACMVFRG--IHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLE 205

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            +  +     I + AC+ +G  + G ++H  +T + F    ++ + N+++DMY +C    
Sbjct: 206 EVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGF--ESNLPVMNSILDMYCRCSCFS 263

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A + F EM  +++++WN++IAG   R    E+L +F  M+  G  P+ FT   ++ +CA
Sbjct: 264 EANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACA 322

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            + +L  G+ +H  + +  ++ +  + NAL+DMY+KCG I  +  VF  M  RD+ S+TA
Sbjct: 323 TLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTA 382

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           M++G   HG   +A+++F +M + GI PD V F+ +LSACSHAGLV+EG ++F  M   Y
Sbjct: 383 MMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDY 442

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
           N+ P  E YGC+VDL GRAG + EA +LI+SMP  PD  VWG  LGACK H    L ++ 
Sbjct: 443 NISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLA 502

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
              ++   P   G Y++++NIY++  +W E  +LRK MK    KK  G S VEV    Y 
Sbjct: 503 AHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVYS 562

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           F  GD+   K   IY++L+ ++   K  GY+
Sbjct: 563 FVVGDEVGSKIEGIYQVLENLIGHMKESGYV 593



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 177/384 (46%), Gaps = 41/384 (10%)

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
            TL++ Y   GLI     LF        +RD+V+WT +I  Y   +  T A + F +M  
Sbjct: 47  TTLIKSYFGKGLIGEARTLFD----EMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMN 102

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG-N 274
             L P+   +  VL AC  +  LS G  +H     +   L   +++ NAL+DMY  C  +
Sbjct: 103 EELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKH--GLDGFIYVDNALMDMYATCCVS 160

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A  VF  + +KN VSW ++IAG THR      L +FR+M    ++ + F+    + +
Sbjct: 161 MDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRA 220

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           C +IG    G+ +H  + K+   ++  + N+++DMY +C    +A   F  M  RD+ ++
Sbjct: 221 CTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITW 280

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGLVE 443
             +I G        ++L +FS M   G  P+  TF  +++AC+           H  ++ 
Sbjct: 281 NTLIAGYE-RSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIR 339

Query: 444 EG-------CKHFLDM-SRVYNLQPQTEHYGCMV--DL---------FGRAGLIREALDL 484
            G           +DM S+  N+    + +G M   DL         +G  G   EA++L
Sbjct: 340 RGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVEL 399

Query: 485 IKSM---PLVPDAFVWGALLGACK 505
              M    + PD  V+ A+L AC 
Sbjct: 400 FDKMVRSGIRPDRVVFMAILSACS 423



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 11/253 (4%)

Query: 41  KQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           +Q HA + K G   +   +     +Y +    S  N      +    +  +N +I     
Sbjct: 231 EQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRY-FYEMNQRDLITWNTLIAGYER 289

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           +NP E++ ++  M  +G  PN +T   ++ AC     L  GQQ+H   ++  L  N+ + 
Sbjct: 290 SNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALS 349

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ +Y+ CG I   H++F       ++RDLVSWT ++  Y    Y  EA+  F  M +
Sbjct: 350 NALIDMYSKCGNIADSHQVF----GGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVR 405

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
           + +RPD ++ + +LSACS  G +  G++  + +  + +N+SPD  I+  ++D+  + G +
Sbjct: 406 SGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGD-YNISPDQEIYGCVVDLLGRAGKV 464

Query: 276 PSARKVFDEMPVK 288
             A ++ + MP K
Sbjct: 465 EEAYELIESMPFK 477



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI---HGKAWKALDIFSEMS 418
           +   L+  Y   G I +A  +F  M  RDV ++T MI G      H  AW    +F EM 
Sbjct: 45  LATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWM---VFCEMM 101

Query: 419 QVGIEPDEVTFVGVLSAC 436
              ++P+  T   VL AC
Sbjct: 102 NEELDPNAFTISSVLKAC 119


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 184/472 (38%), Positives = 287/472 (60%), Gaps = 15/472 (3%)

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL-----IKAVHKLFHFRQHPQAQRDL 187
           +RV +Q+HA  +  A+  +   F  L ++   C L     I    KLF   Q P    ++
Sbjct: 1   MRVLRQIHARLLTHAMPISSISFG-LCKIIGFCALSPYGDIDYARKLFSQIQRP----NI 55

Query: 188 VSWTTLIQAYVKMDYPT-EAILSFFDMCQANL-RPDGMILVIVLSACSKLGDLSLGIKIH 245
            SW ++I+   +   P+ E ++ F  M +     P+   +  VL ACS +  L  G ++H
Sbjct: 56  FSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVH 115

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
             +  + F  SP  F+  AL++ Y KC +I  A KVFDE+  +N+V+W++MI+G    G 
Sbjct: 116 ANVLKSGFGSSP--FVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 173

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
             EAL +FR MQ  G+ PD+ T+V V+++CA  G L+ GKWVH Y++K  I TD  +  A
Sbjct: 174 VNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTA 233

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           LV+MYAKCG I++A  VF +M  +D  ++++MIVGLAI+G A  AL+ F  M +  ++P+
Sbjct: 234 LVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPN 293

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
            VTF+GVLSAC+H+GLV EG +++  M   + + P  E YGCMVDL  RA L+ +A  L+
Sbjct: 294 HVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGCMVDLLCRASLVEDACTLV 352

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
           ++MP+ P+  +W  LL  CK    ++ +E+V + L+  EP     YIL++N+Y+S ++W+
Sbjct: 353 ETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWE 412

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           +  ++RKKMK   +K  PGCS +EV G  +EF  GD SHP+ +E+ ++L +I
Sbjct: 413 KMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDI 464



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 160/324 (49%), Gaps = 27/324 (8%)

Query: 13  YNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQIL------YDK 63
           Y + NTF  ++ + ++  + S+   GQ  Q HA ++K+G   SP  +T ++       D 
Sbjct: 87  YPNPNTFT-MAFVLKACSIVSALEEGQ--QVHANVLKSGFGSSPFVETALVNFYAKCEDI 143

Query: 64  IISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYV 123
           +++    +EI + +L      +  +    L N    EA+ L+R+M   G++P+  T+  V
Sbjct: 144 VLASKVFDEITDRNLVAWSTMISGYARIGLVN----EALGLFRDMQKAGVVPDEVTMVSV 199

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           + AC  S +L  G+ VHAY  K  + +++ +   L+ +YA CG I+   ++F        
Sbjct: 200 ISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVF----DAMP 255

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
            +D  +W+++I          +A+  FF M +A ++P+ +  + VLSAC+  G +S G  
Sbjct: 256 VKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEG-- 313

Query: 244 IHRYITDN-HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLT 301
             RY +    F + P + ++  ++D+  +   +  A  + + MP+  N V W +++ G  
Sbjct: 314 -RRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCK 372

Query: 302 HRGQFKEALDIFRRMQGLGLKPDD 325
                 ++  + +R+  L L+P +
Sbjct: 373 KSKNLDKSEVVAQRL--LELEPHN 394


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 178/485 (36%), Positives = 284/485 (58%), Gaps = 7/485 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK C   + L  G+ VHA+ +++    ++ + NTL+ +YA CG ++   K+F       
Sbjct: 66  LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFE----KM 121

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            QRD V+WTTLI  Y + D P +A+L F  M +    P+   L  V+ A +       G 
Sbjct: 122 PQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGH 181

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           ++H +     F+   +V + +AL+D+Y + G +  A+ VFD +  +N VSWN++IAG   
Sbjct: 182 QLHGFCVKCGFD--SNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 239

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
           R   ++AL++F+ M   G +P  F+   +  +C++ G+LE GKWVH Y+ K+      F 
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           GN L+DMYAK G I  A  +F  +  RDV S+ +++   A HG   +A+  F EM +VGI
Sbjct: 300 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
            P+E++F+ VL+ACSH+GL++EG  H+ ++ +   + P+  HY  +VDL GRAG +  AL
Sbjct: 360 RPNEISFLSVLTACSHSGLLDEGW-HYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRAL 418

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
             I+ MP+ P A +W ALL AC++H   EL     E++   +P+  G ++++ NIY+S  
Sbjct: 419 RFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGG 478

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           RW +A ++RKKMKE  VKK P CS VE+    + F   D+ HP+  EI +  +E++ + K
Sbjct: 479 RWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIK 538

Query: 603 NHGYI 607
             GY+
Sbjct: 539 ELGYV 543



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 156/327 (47%), Gaps = 6/327 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K  SL    ++     Q   V     I     +  P +A+  + +ML  G  PN +T
Sbjct: 104 MYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT 163

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           L  V+KA    +    G Q+H + +K    SNV+V + L+ LY   GL+     +F   +
Sbjct: 164 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 223

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
                R+ VSW  LI  + +     +A+  F  M +   RP       +  ACS  G L 
Sbjct: 224 ----SRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLE 279

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G  +H Y+  +   L    F  N L+DMY K G+I  ARK+FD +  ++VVSWNS++  
Sbjct: 280 QGKWVHAYMIKSGEKLV--AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 337

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G  KEA+  F  M+ +G++P++ + + VL +C++ G L+ G   +  + K+ I  +
Sbjct: 338 YAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPE 397

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSM 386
            +    +VD+  + G +++A      M
Sbjct: 398 AWHYVTVVDLLGRAGDLNRALRFIEEM 424


>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
 gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
          Length = 590

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 197/575 (34%), Positives = 311/575 (54%), Gaps = 20/575 (3%)

Query: 30  RLESSKSVGQLKQFHAFIIKTG----SPQHQTQILYDKIISLSRGNEIENL---SLQNPQ 82
           RL + +S     Q HA ++ +G    SP   + +L   I S+     + +     L  P 
Sbjct: 16  RLRACRSASHAIQCHALLLTSGHLAASPLRLSNLLLLAIASVPGAAPLADAVFARLPEPA 75

Query: 83  V---YLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
               + +N  I+  +   P  A+  +  M   G+ P+ YT P VLKAC  +   R G  V
Sbjct: 76  ARDPFPWNTAIRLHAPGRPRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPGCRAGLLV 135

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           HA +++  L ++++  N L+  Y  C ++  +     F +     RDLVSW +++  YV 
Sbjct: 136 HAEAVRRGLGADLFTVNALISFY--CRILDCISGRKVFDEAGGVSRDLVSWNSMVAGYVG 193

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
                 A   F +M Q     D      ++    K G    G+   R + D       D+
Sbjct: 194 CGEMGLAQELFDEMPQR----DAFSWGALIDGYGKQG--GAGVDRARELFDQMTER--DL 245

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
              N++ID Y + G +  AR +F+EMP +NV+SW+ +I G    G+ KEAL+ F+ M   
Sbjct: 246 VCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRC 305

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G++PD    V  +++CA +G LE G+W+H+YL+K  + +D  +  AL+DMY KCGR+D A
Sbjct: 306 GIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLA 365

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             +F SM  R V ++  MIVGL  HG    A+ +F  M    +  D+++ + +L+AC+HA
Sbjct: 366 MLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHA 425

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLV EG + F  M + + + P+ EHYG +VDL GRAG + +A   I++MP+ P   +WG+
Sbjct: 426 GLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGS 485

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           LL AC+ H+ VELAE+ +E L     +  G Y+L++NIY+ +  W + L++RK M +  +
Sbjct: 486 LLAACRSHSCVELAELSVERLANLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGM 545

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           +K  G S++EV GE +EF  G  SH  T EIY +L
Sbjct: 546 RKDIGRSVIEVDGEIHEFVNGGGSHLCTDEIYLML 580


>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
 gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
          Length = 611

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 203/559 (36%), Positives = 315/559 (56%), Gaps = 25/559 (4%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL---SRGNEIENLS------LQNP 81
           L   K++ Q K  HA I+ T +  +   I   K+I     S  +E  N +      + +P
Sbjct: 11  LPKCKTLLQFKTSHALILTTPTTINTKIIPLSKLIDFCVDSHFDEYFNYANLLFRQIHSP 70

Query: 82  QVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            VY++N +I+  + +N P  ++ LY++ML  G  P+ +T P+VLKAC        G+ VH
Sbjct: 71  NVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYDQVSGKCVH 130

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           +  +K+   +NVYV   L+ +Y  C  +++  K+F        + ++V+WT LI  YV  
Sbjct: 131 SCILKSGFEANVYVATGLLNMYVECKNMESGLKVFD----KIPKWNVVAWTCLINGYVIN 186

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           D P EA+  F +M +  +  + + +V  L AC++  D+  G  +H  +    ++  P VF
Sbjct: 187 DQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGYD--PFVF 244

Query: 261 IHN-------ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
             N       A+++MY KCG +  AR++F++MP +N+V+WN MI       ++ EAL +F
Sbjct: 245 ASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLF 304

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             M   G  PD  T + VL+ CA    L LG+ VH YL K+++  D  +  AL+DMYAK 
Sbjct: 305 FYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDMYAKN 364

Query: 374 GRIDQAFGVFR-SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ-VGIEPDEVTFVG 431
           G +  A  +F  S++ +DV  +T+MI  LAIHG   +AL +F  M +   + PD +T++G
Sbjct: 365 GELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHITYIG 424

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           VL ACSH GLVEE  K F  M++ Y + P+ EHY CMVDL  RAG  REA  L+++M + 
Sbjct: 425 VLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLMETMSIR 484

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P+  +WGALL  C+IH  + +A  V   L   EP   G Y L++NIY++  +W+E  + R
Sbjct: 485 PNIAIWGALLNGCQIHENIPVASQVKVRLAELEPIQSGIYALLSNIYANSGKWEEVNRTR 544

Query: 552 KKMKERKVKKTPGCSLVEV 570
           K MK +++ KT G S VE+
Sbjct: 545 KMMKHKRIAKTIGHSSVEM 563


>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 188/499 (37%), Positives = 281/499 (56%), Gaps = 44/499 (8%)

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           +R  +Q+H Y+++  +     +   L+ +      +   HK+ H    P     L  +  
Sbjct: 1   MRQVKQIHGYTLRNGIDQTKILIEKLLEIPN----LHYAHKVLHHSPKPT----LFLYNK 52

Query: 193 LIQAYVKMDYPTEAILSFFD-MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
           LIQAY           S +  M   +  P+      + SAC+ L   SLG  +H +   +
Sbjct: 53  LIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKS 112

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK----------------------- 288
            F   PD+F   AL+DMY K G +  ARK+FD+MPV+                       
Sbjct: 113 GFE--PDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALE 170

Query: 289 --------NVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIG 339
                   NVVSW +MI+G +   ++ EAL +F RM Q  G+ P+  TL  +  + AN+G
Sbjct: 171 LFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLG 230

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM-KCRDVYSYTAMI 398
            LE+G+ V  Y  KN    + ++ NA+++MYAKCG+ID A+ VF  +   R++ S+ +MI
Sbjct: 231 ALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMI 290

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
           +GLA+HG+  K L ++ +M   G  PD+VTFVG+L AC+H G+VE+G   F  M+  +N+
Sbjct: 291 MGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNI 350

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P+ EHYGCMVDL GRAG +REA ++I+ MP+ PD+ +WGALLGAC  H  VELAEI  E
Sbjct: 351 IPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAE 410

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
           +L   EP   G Y++++NIY+S  +W    KLRK MK  K+ K+ G S +E  G+ ++F 
Sbjct: 411 SLFALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGGQLHKFI 470

Query: 579 KGDKSHPKTLEIYKLLDEI 597
             D+SHP++ EI+ LLD +
Sbjct: 471 VEDRSHPESNEIFALLDGV 489



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 200/410 (48%), Gaps = 57/410 (13%)

Query: 39  QLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQN--------PQVYLYNFII 90
           Q+KQ H + ++ G  Q  T+IL +K++      EI NL   +        P ++LYN +I
Sbjct: 3   QVKQIHGYTLRNGIDQ--TKILIEKLL------EIPNLHYAHKVLHHSPKPTLFLYNKLI 54

Query: 91  QCLSN--ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           Q  S+   +  +  +LY +ML+   LPN +T  ++  AC    S  +GQ +H + +K+  
Sbjct: 55  QAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGF 114

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFH-----------------------------FRQ 179
             +++    L+ +Y   G ++   KLF                              FR 
Sbjct: 115 EPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRL 174

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDL 238
            P   R++VSWTT+I  Y +     EA+  F  M Q   + P+ + L  +  A + LG L
Sbjct: 175 MP--SRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGAL 232

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM-PVKNVVSWNSMI 297
            +G ++  Y   N F    ++++ NA+++MY KCG I  A KVF+E+  ++N+ SWNSMI
Sbjct: 233 EIGQRVEAYARKNGF--FKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMI 290

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK--NH 355
            GL   G+  + L ++ +M G G  PDD T V +L +C + G +E G+ +   +    N 
Sbjct: 291 MGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNI 350

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIH 404
           I      G  +VD+  + G++ +A+ V + M  + D   + A++   + H
Sbjct: 351 IPKLEHYG-CMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFH 399


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 206/608 (33%), Positives = 310/608 (50%), Gaps = 19/608 (3%)

Query: 7   VASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQ-----HQTQILY 61
           V SG R N+      ++    S  LE+ +      Q H  +++TG  +     +    +Y
Sbjct: 197 VWSGERPNEFGFSCVVNACTGSRDLEAGR------QVHGAVVRTGYEKDVFTANALVDMY 250

Query: 62  DKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLP 121
            K+  +     +         V    FI  C+++ +   A+ L  +M   GL+PN +TL 
Sbjct: 251 SKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLS 310

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
            VLKAC  + +  +G+Q+H + +K     + +V   L+ +YA  G +    K+F F    
Sbjct: 311 SVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDF---- 366

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD--GMILVIVLSACSKLGDLS 239
             +RDL+ W  LI          E +  F  M +  L  D     L  VL + +    + 
Sbjct: 367 MPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAIC 426

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
              ++H         L  D  + N LID Y KCG +  A KVF E    +++S  +M+  
Sbjct: 427 HTRQVHALA--EKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTA 484

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           L+     ++A+ +F +M   GL+PD F L  +LN+C ++   E GK VH +L K    +D
Sbjct: 485 LSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSD 544

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            F GNALV  YAKCG I+ A   F  +  R + S++AMI GLA HG   +ALD+F  M  
Sbjct: 545 VFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLD 604

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G+ P+ +T   VLSAC+HAGLV++  K+F  M   + +    EHY CM+D+ GRAG + 
Sbjct: 605 EGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLE 664

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           +A++L+ +MP   +A VWGALLGA ++H   EL  +  E L   EPE  G ++L+ N Y+
Sbjct: 665 DAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYA 724

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
           S   W E  K+RK MK+  VKK P  S VE+  + + F  GDKSHP T +IY  L E+  
Sbjct: 725 SAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGD 784

Query: 600 QSKNHGYI 607
                GY+
Sbjct: 785 LMNKAGYV 792



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 154/540 (28%), Positives = 255/540 (47%), Gaps = 49/540 (9%)

Query: 30  RLESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLY 86
           R  +S+S+      H+ ++K+G      +    LY +    S    + +       V   
Sbjct: 13  RFGTSRSLFAGAHLHSHLLKSGLLAGFSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWS 72

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           + +    +N  P +A+  +R M  +G+  N + LP VLK    +  +R G QVHA ++ T
Sbjct: 73  SLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKC---APDVRFGAQVHALAVAT 129

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            L+ +V+V N L+ +Y   G++    ++F        +R+ VSW T+I AYVK D   +A
Sbjct: 130 RLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDA 189

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           I  F +M  +  RP+      V++AC+   DL  G ++H  +    +    DVF  NAL+
Sbjct: 190 IGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYE--KDVFTANALV 247

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           DMY K G+I  A  VF++MP  +VVSWN+ I+G    G    AL++  +M+  GL P+ F
Sbjct: 248 DMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVF 307

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           TL  VL +CA  G   LG+ +H ++ K   + D F+   LVDMYAK G +D A  VF  M
Sbjct: 308 TLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFM 367

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD--EVTFVGVLSACSHAGLVEE 444
             RD+  + A+I G +  G+  + L +F  M + G++ D    T   VL + + +   E 
Sbjct: 368 PRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASS---EA 424

Query: 445 GC--KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL---------DLIKSMPLV-- 491
            C  +    ++    L   +     ++D + + G +  A+         D+I S  ++  
Sbjct: 425 ICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTA 484

Query: 492 -----------------------PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
                                  PD+FV  +LL AC   +  E  + V  +L++ +   D
Sbjct: 485 LSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSD 544



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 143/511 (27%), Positives = 235/511 (45%), Gaps = 52/511 (10%)

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I   + N    +AI ++REM+  G  PN +    V+ AC  S+ L  G+QVH   +
Sbjct: 173 WNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVV 232

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           +T    +V+  N L+ +Y+  G I+    +  F + P A  D+VSW   I   V   +  
Sbjct: 233 RTGYEKDVFTANALVDMYSKLGDIEMAATV--FEKMPAA--DVVSWNAFISGCVTHGHDH 288

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
            A+     M  + L P+   L  VL AC+  G  +LG +IH ++     +   D F+   
Sbjct: 289 RALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADF--DEFVAVG 346

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM--QGLGLK 322
           L+DMY K G +  ARKVFD MP ++++ WN++I+G +H G+  E L +F RM  +GL L 
Sbjct: 347 LVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLD 406

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            +  TL  VL S A+   +   + VH   +K  + +D  + N L+D Y KCG++D A  V
Sbjct: 407 VNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKV 466

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F+  +  D+ S T M+  L+       A+ +F +M + G+EPD      +L+AC+     
Sbjct: 467 FKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAY 526

Query: 443 EEG----------------------------CKHFLDMSRVYNLQPQTE--HYGCMVDLF 472
           E+G                            C    D    ++  P+     +  M+   
Sbjct: 527 EQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGL 586

Query: 473 GRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLV------RF 523
            + G  + ALDL   M    + P+     ++L AC     V+ A+   E++       R 
Sbjct: 587 AQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRT 646

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
           E      Y  M +I     + ++A++L   M
Sbjct: 647 EEH----YACMIDILGRAGKLEDAMELVNNM 673


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 184/497 (37%), Positives = 286/497 (57%), Gaps = 7/497 (1%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           G  P++ TL  VL AC  +++L   ++VHA++++  L   V V   ++  Y  CG ++A 
Sbjct: 114 GERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAA 173

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
             +F         R+ VSW  +I  Y      TEA+  F+ M Q  +      ++  L A
Sbjct: 174 RAVFDC----MPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQA 229

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV- 290
           C +LG L    ++H  +      LS +V + NALI  Y KC     A +VF+E+  K   
Sbjct: 230 CGELGYLDEVRRVHELLV--RVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTR 287

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           +SWN+MI G T     ++A  +F RMQ   ++PD FTLV V+ + A+I      +W+H Y
Sbjct: 288 ISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGY 347

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
             ++ ++ D ++  AL+DMY+KCGR+  A  +F S + R V ++ AMI G   HG    A
Sbjct: 348 SIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAA 407

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           +++F EM   G  P+E TF+ VL+ACSHAGLV+EG K+F  M + Y L+P  EHYG MVD
Sbjct: 408 VELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVD 467

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           L GRAG + EA   IK+MP+ P   V+GA+LGACK+H  VELAE   + +    PE    
Sbjct: 468 LLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVY 527

Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
           ++L+ NIY++ + WK+  ++R  M+++ ++KTPG S++++  E + F  G  +H    +I
Sbjct: 528 HVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDI 587

Query: 591 YKLLDEIMHQSKNHGYI 607
           Y  L +++ + K+ GY+
Sbjct: 588 YARLAKLIEEIKDMGYV 604



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 155/326 (47%), Gaps = 9/326 (2%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P   T   +LK C     L  G+ VHA      L S       L  +Y  C       ++
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC--QANLRPDGMILVIVLSAC 232
           F   + P   RD V+W  ++  Y +   P+ A+ +   M   +   RPD + LV VL AC
Sbjct: 74  FD--RMP--SRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPAC 129

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           +    L    ++H +       L   V +  A++D Y KCG + +AR VFD MPV+N VS
Sbjct: 130 ADARALHACREVHAFAL--RAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVS 187

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WN+MI G    G   EA+ +F RM   G+   D +++  L +C  +G+L+  + VH  L 
Sbjct: 188 WNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLV 247

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV-YSYTAMIVGLAIHGKAWKAL 411
           +  ++++  + NAL+  YAKC R D A  VF  +  +    S+ AMI+G   +     A 
Sbjct: 248 RVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAE 307

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACS 437
            +F+ M    + PD  T V V+ A +
Sbjct: 308 RLFARMQLENVRPDSFTLVSVIPAVA 333



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 203/417 (48%), Gaps = 18/417 (4%)

Query: 22  LSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQH---QTQIL--YDKIISLSRGNEIENL 76
           ++L+   P    ++++   ++ HAF ++ G  +     T +L  Y K  ++     + + 
Sbjct: 120 VTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDC 179

Query: 77  SLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
                 V     I     N N  EA+AL+  M+ +G+     ++   L+AC +   L   
Sbjct: 180 MPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEV 239

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           ++VH   ++  L SNV V N L+  YA C       ++F+   + + +   +SW  +I  
Sbjct: 240 RRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTR---ISWNAMILG 296

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           + + + P +A   F  M   N+RPD   LV V+ A + + D      IH Y   +   L 
Sbjct: 297 FTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQ--LD 354

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            DV++  ALIDMY KCG +  AR++FD    ++V++WN+MI G    G  + A+++F  M
Sbjct: 355 QDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEM 414

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGR 375
           +G G  P++ T + VL +C++ G ++ G+     + K++    G      +VD+  + G+
Sbjct: 415 KGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGK 474

Query: 376 IDQAFGVFRSMKCRDVYS-YTAMIVGLAIHGKAWKALDIFSEMSQVGIE--PDEVTF 429
           +D+A+   ++M      S Y AM+    +H    K +++  E +Q+  E  P+E  +
Sbjct: 475 LDEAWSFIKNMPIEPGISVYGAMLGACKLH----KNVELAEESAQIIFELGPEEGVY 527



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 4/219 (1%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +L  C+   DL+ G  +H  +      L+ +     AL +MY KC     AR+VFD MP 
Sbjct: 22  LLKLCAARADLATGRAVHAQLEAR--GLASESIASTALANMYFKCRRPADARRVFDRMPS 79

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL--GLKPDDFTLVCVLNSCANIGWLELGK 345
           ++ V+WN+++AG    G    A++   RMQG   G +PD  TLV VL +CA+   L   +
Sbjct: 80  RDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACR 139

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            VH +  +  ++    +  A++D Y KCG ++ A  VF  M  R+  S+ AMI G A +G
Sbjct: 140 EVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNG 199

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            A +A+ +F  M Q G++  + + +  L AC   G ++E
Sbjct: 200 NATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDE 238



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 4/177 (2%)

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T   +L  CA    L  G+ VH  L+   + ++     AL +MY KC R   A  VF  M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEM--SQVGIEPDEVTFVGVLSACSHAGLVEE 444
             RD  ++ A++ G A +G    A++    M   + G  PD VT V VL AC+ A  +  
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARAL-H 136

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
            C+     +    L         ++D + + G +  A  +   MP V ++  W A++
Sbjct: 137 ACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMP-VRNSVSWNAMI 192


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 172/472 (36%), Positives = 282/472 (59%), Gaps = 9/472 (1%)

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           ++H Y +K++  ++     TL+            +  + F + P    D +++ T+I+++
Sbjct: 6   RLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSP--DTIAYNTIIRSH 63

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            +  +P+ ++  FF M    +  D      VL ACS+L    + + +H  I    + L  
Sbjct: 64  SRF-FPSHSLSYFFSMRSNGIPLDNFTFPFVLKACSRL---QINLHLHSLIVK--YGLGS 117

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           D+F+ NALI +Y  CG++  A KVFDEM  ++ VSW+++IA   + G   EALD+F +MQ
Sbjct: 118 DIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQ 177

Query: 318 -GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
               + PD+ T++ V+++ +++G LELG+WV  ++ +        +G AL+DM+++CG I
Sbjct: 178 LEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSI 237

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           D++  VF  M  R+V ++TA+I GL IHG++ +AL +F  M + G++PD VTF GVL AC
Sbjct: 238 DESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVAC 297

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SH GLV+EG   F  + +VY + P  +HYGCMVD+ GRAGL+ EA D ++ MP+ P++ +
Sbjct: 298 SHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSII 357

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W  LLGAC  H  + LAE V   + +     +G  +L++N+Y +  RW E   +R KM+E
Sbjct: 358 WRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMRE 417

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
           +++ K PGCS + V    +EF  GD SHP++ +I K L  I+   +N GY++
Sbjct: 418 KRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMM 469



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 173/312 (55%), Gaps = 13/312 (4%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           + +P    YN II+  S   P  +++ +  M   G+  + +T P+VLKAC     L++  
Sbjct: 48  IPSPDTIAYNTIIRSHSRFFPSHSLSYFFSMRSNGIPLDNFTFPFVLKAC---SRLQINL 104

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            +H+  +K  L S+++V N L+ +Y  CG ++   K+F       ++RD VSW+T+I ++
Sbjct: 105 HLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVF----DEMSERDSVSWSTVIASF 160

Query: 198 VKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           +   Y +EA+  F  M  +  + PD + ++ V+SA S LGDL LG  +  +I    F +S
Sbjct: 161 LNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVS 220

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
             V +  ALIDM+ +CG+I  +  VF++M V+NV++W ++I GL   G+  EAL +F  M
Sbjct: 221 --VALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSM 278

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCG 374
           +  G++PD  T   VL +C++ G ++ G  +   + K +   D  + +   +VD+  + G
Sbjct: 279 RKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVY-GMDPLLDHYGCMVDILGRAG 337

Query: 375 RIDQAFGVFRSM 386
            +++A+     M
Sbjct: 338 LLNEAYDFVERM 349


>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
 gi|223947871|gb|ACN28019.1| unknown [Zea mays]
 gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
          Length = 651

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 205/583 (35%), Positives = 301/583 (51%), Gaps = 96/583 (16%)

Query: 78  LQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +++P  +  N +++  L    P     LY  M      P+TYT P +  AC     +R G
Sbjct: 69  VRSPNAFTCNTLLKAALRQGFPHLCFPLYASMPAA---PDTYTHPLLAAACAARGDVREG 125

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-------------------- 176
            QVH++S+K     N+Y+ N LM +Y+ CG + +  ++F                     
Sbjct: 126 LQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNTILATYVRD 185

Query: 177 ---------FRQHPQ-------------AQRDLV----------------SWTTLIQAYV 198
                    F + P+             A+R +V                +WT ++  + 
Sbjct: 186 GDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFE 245

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG----------------- 241
           + D   EA+  F DM +     D  ++V V++AC+K G +  G                 
Sbjct: 246 RNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVN 305

Query: 242 ---IKIHRYIT-----------DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
              + IH Y +           DN  +L  D F  N++I  YLK G +  A+ +FD MP 
Sbjct: 306 VQNVLIHMYSSCQDVVAARRLFDNGESL--DHFSWNSMISGYLKNGRVEDAKALFDVMPD 363

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K+ VSW++MIAG  H  Q  EAL++F  M+   +KPDD TLV V+++C+N+  LE GK V
Sbjct: 364 KDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGKLV 423

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H Y+ K   N    +G +L+DMY KCG ++ A  VF  ++ +    + A+IVGLA++G  
Sbjct: 424 HEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLV 483

Query: 408 WKALDIFSEMSQVGIE-PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
            ++LD+FSEM   G   P+E+TF GVLSAC H GLVEEG + F  M   Y + P   HYG
Sbjct: 484 TRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYG 543

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CMVDL GRAG +REA D+I+SMP+ PD   WGALLGAC  H   E+ E V + LV+ +P+
Sbjct: 544 CMVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHGDSEVGERVGKKLVKLDPD 603

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
            DG   +++NIY+S+  W+    LR  MK++ V K  GCS+VE
Sbjct: 604 HDGFQTMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCSMVE 646



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 177/400 (44%), Gaps = 78/400 (19%)

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV-HKLFHFRQHPQAQRDLVSWT--TLI 194
           Q+HA  + + LL++ Y  + L+         + + H L H  Q     R   ++T  TL+
Sbjct: 22  QIHAQFLASGLLADAYAASRLLLFTTSATAARLLPHPLHHSLQLFGLVRSPNAFTCNTLL 81

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
           +A ++  +P      +  M  A   PD     ++ +AC+  GD+  G+++H +   + F 
Sbjct: 82  KAALRQGFPHLCFPLYASMPAA---PDTYTHPLLAAACAARGDVREGLQVHSHSVKHGF- 137

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
            S ++++ NAL+ MY  CG + SAR+VFD  PV + VSWN+++A     G  ++A+ +F 
Sbjct: 138 -SDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVKVFT 196

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           RM      P+                                       +A+V ++A+ G
Sbjct: 197 RM------PERSAAA---------------------------------VSAMVALFARRG 217

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            +++A GVF   + RD +++TAM+     +    +AL +FS+M + G   DE   V V++
Sbjct: 218 MVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVA 277

Query: 435 ACSHAGLVEEG----------------------------CKHFLDMSRVYNLQPQTEHYG 466
           AC+ +G+++ G                            C+  +   R+++     +H+ 
Sbjct: 278 ACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFS 337

Query: 467 --CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
              M+  + + G + +A  L   MP   D   W A++  C
Sbjct: 338 WNSMISGYLKNGRVEDAKALFDVMP-DKDNVSWSAMIAGC 376


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 164/354 (46%), Positives = 233/354 (65%), Gaps = 4/354 (1%)

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           PD+   NA+I    K G I  ARK+FD+MP KNV+SW+ MI G    G++K AL +FR +
Sbjct: 124 PDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSL 183

Query: 317 Q---GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
           Q   G  L+P++FT+  VL++CA +G L+ GKWVH Y+DK  +  D  +G +L+DMYAKC
Sbjct: 184 QTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKC 243

Query: 374 GRIDQAFGVFRSMKC-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           G I++A  +F ++   +DV +++AMI   ++HG + + L++F+ M   G+ P+ VTFV V
Sbjct: 244 GSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAV 303

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           L AC H GLV EG ++F  M   Y + P  +HYGCMVDL+ RAG I +A +++KSMP+ P
Sbjct: 304 LCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEP 363

Query: 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552
           D  +WGALL   +IH  VE  EI +  L+  +P    AY+L++N+Y+   RW+E   LR 
Sbjct: 364 DVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRD 423

Query: 553 KMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            M+ R +KK PGCSLVEV G   EF  GD SHP+ L +Y +LDEIM + + HGY
Sbjct: 424 LMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGY 477



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/375 (29%), Positives = 190/375 (50%), Gaps = 55/375 (14%)

Query: 75  NLSLQNPQVYLYNFIIQCLSNA---NPL--EAIALYREMLIKGLLPNTYTLPYVLKACWQ 129
           +LS  N + +++N +I+  + +   NP    A++LY  M +  +LP+ +T P++L++   
Sbjct: 16  HLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSI-- 73

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH------------- 176
             +   G+Q+HA  +   L ++ +V  +L+ +Y+ CG      + F              
Sbjct: 74  -NTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAI 132

Query: 177 ----------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ----A 216
                           F Q P  +++++SW+ +I  YV      +A LS F   Q    +
Sbjct: 133 IHANAKAGMIHIARKLFDQMP--EKNVISWSCMIHGYVSCG-EYKAALSLFRSLQTLEGS 189

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            LRP+   +  VLSAC++LG L  G  +H YI      +  DV +  +LIDMY KCG+I 
Sbjct: 190 QLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKI--DVVLGTSLIDMYAKCGSIE 247

Query: 277 SARKVFDEM-PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
            A+ +FD + P K+V++W++MI   +  G  +E L++F RM   G++P+  T V VL +C
Sbjct: 248 RAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCAC 307

Query: 336 ANIGWLELGKWVHTYLDK--NHINTDGFIGN--ALVDMYAKCGRIDQAFGVFRSMKCR-D 390
            + G +  G   + Y  +  N       I +   +VD+Y++ GRI+ A+ V +SM    D
Sbjct: 308 VHGGLVSEG---NEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPD 364

Query: 391 VYSYTAMIVGLAIHG 405
           V  + A++ G  IHG
Sbjct: 365 VMIWGALLNGARIHG 379



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 130/250 (52%), Gaps = 14/250 (5%)

Query: 101 AIALYREM-LIKG--LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           A++L+R +  ++G  L PN +T+  VL AC +  +L+ G+ VHAY  KT +  +V +  +
Sbjct: 176 ALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTS 235

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +YA CG I+    +F    +   ++D+++W+ +I A+       E +  F  M    
Sbjct: 236 LIDMYAKCGSIERAKCIF---DNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDG 292

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           +RP+ +  V VL AC   G +S G +  + +  N + +SP +  +  ++D+Y + G I  
Sbjct: 293 VRPNAVTFVAVLCACVHGGLVSEGNEYFKRMM-NEYGVSPMIQHYGCMVDLYSRAGRIED 351

Query: 278 ARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
           A  V   MP++ +V+ W +++ G    G  +       ++  L L P + +   +L++  
Sbjct: 352 AWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKL--LELDPANSSAYVLLSNV- 408

Query: 337 NIGWLELGKW 346
              + +LG+W
Sbjct: 409 ---YAKLGRW 415



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 49/275 (17%)

Query: 293 WNSMIAGLT----HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           WN++I   T        F  AL ++ RM+   + PD  T   +L S   I     G+ +H
Sbjct: 27  WNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQS---INTPHRGRQLH 83

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGR---IDQAFG------------------------ 381
             +    +  D F+  +L++MY+ CG      QAF                         
Sbjct: 84  AQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIH 143

Query: 382 ----VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV---GIEPDEVTFVGVLS 434
               +F  M  ++V S++ MI G    G+   AL +F  +  +    + P+E T   VLS
Sbjct: 144 IARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLS 203

Query: 435 ACSHAGLVEEG--CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           AC+  G ++ G     ++D +    ++        ++D++ + G I  A  +  ++    
Sbjct: 204 ACARLGALQHGKWVHAYIDKT---GMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEK 260

Query: 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           D   W A++ A  +H    L+E  +E   R   +G
Sbjct: 261 DVMAWSAMITAFSMHG---LSEECLELFARMVNDG 292


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 291/548 (53%), Gaps = 53/548 (9%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K  +LS   ++ N SL N  +  YN II   + ++             KGL  +  +
Sbjct: 319 MYMKCNNLSDAQKLFN-SLPNHNLQSYNAIIVGYARSD-------------KGLGLDEVS 364

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           L    +AC   +    G QVH  SMK+   SN+ V N ++ +Y  CG +     +F    
Sbjct: 365 LSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFE--- 421

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
                RD VSW  +I A+ + +   E  LS F                            
Sbjct: 422 -EMVSRDAVSWNAIIAAH-EQNGNEEKTLSLF---------------------------- 451

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
               IH  I  +   L  D F+  ALIDMY KCG +  A K+ D +  + VVSWN++I+G
Sbjct: 452 ----IHNRIIKSRLGL--DSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISG 505

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
            + + Q +EA   F +M  +G+ PD+FT   +L++CAN+  +ELGK +H  + K  + +D
Sbjct: 506 FSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD 565

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            +I + LVDMY+KCG +     +F     RD  ++ AM+ G A HG   +AL IF  M  
Sbjct: 566 AYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQL 625

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             ++P+  TF+ VL AC H GLVE+G  +F  M   Y L PQ EHY C+VD+ GR+G + 
Sbjct: 626 ENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVS 685

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           +AL+LI+ MP   DA +W  LL  CKIH  VE+AE    ++++ EPE   AY+L++NIY+
Sbjct: 686 KALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYA 745

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
           +   W E  KLRK M+   +KK PGCS +E+  E + F  GDK+HP++ EIY+ LD +  
Sbjct: 746 NAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTD 805

Query: 600 QSKNHGYI 607
           + K  GY+
Sbjct: 806 EMKWVGYM 813



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/512 (26%), Positives = 222/512 (43%), Gaps = 59/512 (11%)

Query: 81  PQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           P  + +NF  +      P+   + Y+    K       T  ++ + C   ++L  G+Q H
Sbjct: 11  PIRFFFNFQSKSPFKTLPISPFSSYQATPTK-----KKTFSHIFQECSDRKALCPGKQAH 65

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH------------------------ 176
           A  + T     V+V N L+++Y  C  ++   K+F                         
Sbjct: 66  ARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIG 125

Query: 177 -----FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
                F   P+  RD+VSW +LI  Y+      + I  F  M +     D     +VL +
Sbjct: 126 VAQKLFDAMPE--RDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKS 183

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           CS L D   GI+IH       F+   DV   +AL+DMY KC  +  + + F  MP KN V
Sbjct: 184 CSSLEDHGGGIQIHGLAVKMGFDC--DVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWV 241

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           SW+++IAG       +  L++F+ MQ  G+     T   V  SCA +  L LG  +H + 
Sbjct: 242 SWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHA 301

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            K    TD  IG A +DMY KC  +  A  +F S+   ++ SY A+IVG A         
Sbjct: 302 LKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYA--------- 352

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVD 470
                 S  G+  DEV+  G   AC+      EG + H L M  +   Q        ++D
Sbjct: 353 -----RSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSL--CQSNICVANAILD 405

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE--LAEIVMENLVRFEPEGD 528
           ++G+ G + EA  + + M +  DA  W A++ A + +   E  L+  +   +++     D
Sbjct: 406 MYGKCGALVEACLVFEEM-VSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLD 464

Query: 529 G-AYILMTNIYSSKNRWKEALKLRKKMKERKV 559
               I + ++YS     ++A KL  ++ E+ V
Sbjct: 465 SFVGIALIDMYSKCGMMEKAEKLHDRLAEQTV 496



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 212/467 (45%), Gaps = 59/467 (12%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           L N +  + I ++ +M   G + +  T   VLK+C   +    G Q+H  ++K     +V
Sbjct: 150 LHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDV 209

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
              + L+ +YA C  +    + F    H   +++ VSW+ +I   V+ D     +  F +
Sbjct: 210 VTGSALLDMYAKCKKLDCSIQFF----HSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKE 265

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +A +         V  +C+ L  L LG ++H +     F    DV I  A +DMY+KC
Sbjct: 266 MQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDF--GTDVVIGTATLDMYMKC 323

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
            N+  A+K+F+ +P  N+ S+N++I G              R  +GLGL  D+ +L    
Sbjct: 324 NNLSDAQKLFNSLPNHNLQSYNAIIVGYA------------RSDKGLGL--DEVSLSGAF 369

Query: 333 NSCANI-GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
            +CA I G LE G  VH    K+   ++  + NA++DMY KCG + +A  VF  M  RD 
Sbjct: 370 RACAVIKGDLE-GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDA 428

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSE----MSQVGIEPDEVTFVGVL-----SACS----- 437
            S+ A+I     +G   K L +F       S++G++    +FVG+      S C      
Sbjct: 429 VSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLD----SFVGIALIDMYSKCGMMEKA 484

Query: 438 ---HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
              H  L E+    +  +   ++LQ Q+E               ++    +  M + PD 
Sbjct: 485 EKLHDRLAEQTVVSWNAIISGFSLQKQSEE-------------AQKTFSKMLEMGVDPDN 531

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT--NIYS 539
           F +  +L  C     VEL + +   +++ E + D AYI  T  ++YS
Sbjct: 532 FTYATILDTCANLVTVELGKQIHAQIIKKELQSD-AYISSTLVDMYS 577


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 211/603 (34%), Positives = 315/603 (52%), Gaps = 25/603 (4%)

Query: 16   INTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI------LYDKIISLSR 69
            ++ F + S+L +  R        + ++ HA +I+TG   ++  I      +Y K  +++ 
Sbjct: 862  LSAFSEFSVLEEGRR--------KGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIAD 913

Query: 70   GNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ 129
               +  L ++   V   + I     N    +A   +  M   G +P+ +TL   L +C  
Sbjct: 914  ACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCAS 973

Query: 130  SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
               + +G+Q+H   +K  L ++V V N L+ LYA  G      K+F        + D VS
Sbjct: 974  LGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSL----MPEYDQVS 1029

Query: 190  WTTLIQAYVKMDYP-TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
            W ++I A    +   ++A+  F +M +       +  + +LSA S L    +  +IH  +
Sbjct: 1030 WNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALV 1089

Query: 249  TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFK 307
                + LS D  I NAL+  Y KCG +    K+F  M   ++ VSWNSMI+G  H     
Sbjct: 1090 L--KYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLH 1147

Query: 308  EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALV 367
            +A+D+   M   G + D FT   VL++CA++  LE G  VH    +  + +D  +G+ALV
Sbjct: 1148 KAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALV 1207

Query: 368  DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
            DMY+KCGRID A   F  M  R+VYS+ +MI G A HG   KAL +F+ M   G  PD V
Sbjct: 1208 DMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHV 1267

Query: 428  T-FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
               +GVLSACSH G VEEG +HF  MS VY L P+ EH+ CMVDL GRAG + E  D I 
Sbjct: 1268 APLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFIN 1327

Query: 487  SMPLVPDAFVWGALLGA-CKIHAK-VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544
            SMP+ P+  +W  +LGA C+ + +  EL     E L+  EP+    Y+L+ N+Y+S  +W
Sbjct: 1328 SMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKW 1387

Query: 545  KEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
            ++  K R  MKE  VKK  GCS V +    + F  GDK HP+   IY  L E+  + ++ 
Sbjct: 1388 EDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDA 1447

Query: 605  GYI 607
            GYI
Sbjct: 1448 GYI 1450



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 202/406 (49%), Gaps = 26/406 (6%)

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            +++H  S+K   + N+++ NTL+ +Y   G + +  KLF       + R+LV+W  LI 
Sbjct: 563 ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFD----EMSNRNLVTWACLIS 618

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG--DLSLGIKIHRYITDNHF 253
            Y +   P EA   F DM +A   P+       L AC + G     LG++IH  I+   +
Sbjct: 619 GYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRY 678

Query: 254 NLSPDVFIHNALIDMYLKC-GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
               DV + N LI MY  C  +   AR VFD + ++N +SWNS+I+  + RG    A D+
Sbjct: 679 --GSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDL 736

Query: 313 FRRMQ----GLGLKPDDFTLVCVLN-SCANIGW-LELGKWVHTYLDKNHINTDGFIGNAL 366
           F  MQ    G   KP+++T   ++  +C+++ + L + + +   ++K+    D ++G+AL
Sbjct: 737 FSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSAL 796

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ-VGIEPD 425
           V  +A+ G  D A  +F  M  R+V S   ++VGL    +   A  +F EM   VGI  D
Sbjct: 797 VSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD 856

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMS----RVYNLQPQTEHYGCMVDLFGRAGLIREA 481
             ++V +LSA S   ++EEG +   ++     R      +      +V+++ ++G I +A
Sbjct: 857 --SYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADA 914

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
             + + M +  D+  W +L+       + E +E   E+ +R    G
Sbjct: 915 CSVFELM-VEKDSVSWNSLISGLD---QNECSEDAAESFLRMRRTG 956



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 197/422 (46%), Gaps = 21/422 (4%)

Query: 95   NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQS--QSLRVGQQVHAYSMKTALLSNV 152
            N  P EA A +R+M+  G +PN Y     L+AC +S     ++G Q+H    KT   S+V
Sbjct: 623  NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 682

Query: 153  YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
             V N L+ +Y  C L  A      F +     R+ +SW ++I  Y +      A   F  
Sbjct: 683  VVCNVLISMYGSC-LDSANDARSVFDR--IGIRNSISWNSIISVYSRRGDXVSAYDLFSS 739

Query: 213  MCQANL----RPDGMIL-VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
            M +  L    +P+      ++ +ACS + D  L +               D+++ +AL+ 
Sbjct: 740  MQKEGLGFSFKPNEYTFGSLITAACSSV-DFGLCVLEQMLARVEKSGFLQDLYVGSALVS 798

Query: 268  MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDF 326
             + + G    A+ +F++M V+NVVS N ++ GL  + Q + A  +F  M+ L G+  D +
Sbjct: 799  GFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSY 858

Query: 327  TLVCVLNSCANIGWLE----LGKWVHTYLDKNHINTDGF-IGNALVDMYAKCGRIDQAFG 381
              V +L++ +    LE     G+ VH ++ +  +N +   IGN LV+MYAK G I  A  
Sbjct: 859  --VVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACS 916

Query: 382  VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
            VF  M  +D  S+ ++I GL  +  +  A + F  M + G  P   T +  LS+C+  G 
Sbjct: 917  VFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGW 976

Query: 442  VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
            +  G +   D  ++  L         ++ L+   G   E L +   MP   D   W +++
Sbjct: 977  IMLGEQIHCDGLKL-GLDTDVSVSNALLALYAETGCFTECLKVFSLMPEY-DQVSWNSVI 1034

Query: 502  GA 503
            GA
Sbjct: 1035 GA 1036



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 159/344 (46%), Gaps = 42/344 (12%)

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           ++F+ N LI++Y++ G++ SA+K+FDEM  +N+V+W  +I+G T  G+  EA   FR M 
Sbjct: 578 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 637

Query: 318 GLGLKPDDFTLVCVLNSCANIG--WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC-G 374
             G  P+ +     L +C   G    +LG  +H  + K    +D  + N L+ MY  C  
Sbjct: 638 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 697

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI----EPDEVTFV 430
             + A  VF  +  R+  S+ ++I   +  G    A D+FS M + G+    +P+E TF 
Sbjct: 698 SANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFG 757

Query: 431 GVLS-ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL---------FGRAGLIRE 480
            +++ ACS              +  +  +  + E  G + DL         F R GL  +
Sbjct: 758 SLITAACSSVD---------FGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDD 808

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV--MENLVRFEPEGDGAYILMTNIY 538
           A ++ + M +     + G ++G  K       A++   M++LV    +   +Y+++ + +
Sbjct: 809 AKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD---SYVVLLSAF 865

Query: 539 SS---------KNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
           S          K R   A  +R  + + KV    G  LV +Y +
Sbjct: 866 SEFSVLEEGRRKGREVHAHVIRTGLNDNKV--AIGNGLVNMYAK 907


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 175/507 (34%), Positives = 290/507 (57%), Gaps = 8/507 (1%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           ++ L+ +M I G +P+  ++   ++AC QS  L+VG+ VH Y + +    +    N L+ 
Sbjct: 307 SVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILID 365

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +YA CG + A  ++F   +     +D V+W +LI  Y +  Y  E + SF  M +   +P
Sbjct: 366 MYAKCGDLLAAQEVFDTTKC----KDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKP 420

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D +  V++LS  S+L D++ G  IH  +    F    ++ I N+L+D+Y KCG +    K
Sbjct: 421 DSVTFVLLLSIFSQLADINQGRGIHCDVI--KFGFEAELIIGNSLLDVYAKCGEMDDLLK 478

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VF  M   +++SWN++IA   H         +   M+  GL PD+ T++ +L  C+ +  
Sbjct: 479 VFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAV 538

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
              GK +H Y+ K+   ++  IGNAL++MY+KCG ++    VF+ MK +DV ++TA+I  
Sbjct: 539 RRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISA 598

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
             ++G+  KAL  F +M   G+ PD V F+  + ACSH+G+V+EG + F  M   YNL+P
Sbjct: 599 FGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEP 658

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
           + EHY C+VDL  R+GL+ +A + I SMP+ PDA +WGALL AC+      +A+ V + +
Sbjct: 659 RMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKI 718

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
           +    +  G Y+L++NIY++  +W +   +R  MK + +KK PG S +E+    Y FR G
Sbjct: 719 LELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTG 778

Query: 581 DKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           DKS  +  ++  LL+ ++      GY+
Sbjct: 779 DKSFEQYDKVKDLLEYLVRLMAKEGYV 805



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 241/486 (49%), Gaps = 23/486 (4%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS--------LSRGNEIENLSLQNPQ 82
           L S+K+  QL+  H+ II +G     + I   K+IS        +S  +   ++S  N  
Sbjct: 29  LSSAKNTPQLRTVHSLIITSG--LSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTN-N 85

Query: 83  VYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           VYL+N II+ L+ N    +A+  Y EM  K L P+ +T P V+ +C +   L +G  VH 
Sbjct: 86  VYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHE 145

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           ++M+    S++Y+ N L+ +Y+    +     +F       + RD VSW +LI  Y    
Sbjct: 146 HAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF----EEMSNRDSVSWNSLISGYCSNG 201

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           +  +A+  +       + PD   +  VL AC  L  +  G+ +H  I      ++ DV I
Sbjct: 202 FWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVI--EKIGIAGDVII 259

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            N L+ MY K   +  AR+VF +M VK+ V+WN+MI G    G+ + ++ +F  M   G 
Sbjct: 260 GNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GF 318

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
            PD  ++   + +C   G L++GK+VH YL  +    D    N L+DMYAKCG +  A  
Sbjct: 319 VPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQE 378

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF + KC+D  ++ ++I G    G   + L+ F +M ++  +PD VTFV +LS  S    
Sbjct: 379 VFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLAD 437

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           + +G     D+ + +  + +      ++D++ + G + + L +   M    D   W  ++
Sbjct: 438 INQGRGIHCDVIK-FGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMS-AHDIISWNTVI 495

Query: 502 GACKIH 507
            A  +H
Sbjct: 496 -ASSVH 500


>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
          Length = 565

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 198/556 (35%), Positives = 314/556 (56%), Gaps = 23/556 (4%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL------QNPQ-- 82
           LE  K++ +LKQ H+ +IKT   ++   I   ++I     +E+ ++        Q  Q  
Sbjct: 12  LEKCKTMKELKQIHSLMIKTSVVKNI--IPCSRLIDFCANSELGDIEYARTVFDQTDQLT 69

Query: 83  VYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           VY++N +I+   N  +   A+ +Y EM  KG  P+ +T P+VLK C     L  GQ VH 
Sbjct: 70  VYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHN 129

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             +KT    +VY  + L+ +Y  CG + +  K+F F      + ++V+WT+LI  +V  D
Sbjct: 130 RIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEF----IPKWNVVAWTSLIAGFVNND 185

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY------ITDNHFNL 255
            P EA+  F DM    + P+ + +   L+A ++  D+  G K+ RY      +   H N 
Sbjct: 186 QPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTG-KLVRYRLRQLGLDPFHTNS 244

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             +V +  A++DMY KCG + +AR +FD+MP +N+V WNSMI+  +  G+  EAL +F  
Sbjct: 245 RFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVD 304

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+  G  P+  T + V+ +C ++ +   G+ +H  + K + +    IG AL+DMYAK G 
Sbjct: 305 MELAGFVPNKATFLSVIRACTHLRFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKSGD 364

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLS 434
            D A  +F  ++ +DV ++T MI GLAI GK  +AL++F  M +   + PD++T++ VL 
Sbjct: 365 ADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLW 424

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           ACSH GLVEEG KHF  M  VY ++P  EHYGCM+DL  RAG   EA +L+  MP  P+A
Sbjct: 425 ACSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEELLVKMPTQPNA 484

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            +  ++L  C+++  V LA  V  ++V  +    G Y+L++NI++    W+E    R  +
Sbjct: 485 TILSSILNGCEMYGNVGLANRVKSHIVELKNSSSGVYVLLSNIHAKACNWEEMKLARDIL 544

Query: 555 KERKVKKTPGCSLVEV 570
           K +K+ KT G S VE+
Sbjct: 545 KHKKIGKTLGNSFVEM 560


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/351 (45%), Positives = 236/351 (67%)

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
           S ++ +  A+I  Y + G +  AR +FD+M  K++V W++MI+G     + +EAL++F  
Sbjct: 11  SRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSE 70

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           MQ  G+KPD  T++ V+++CA +G L+  KW+H Y+DKN +     + NAL+DMYAKCG 
Sbjct: 71  MQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGN 130

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +  A GVF  M+ R+V S+T+MI   AIHG A  AL  F +M    I+P+ VTFVGVL A
Sbjct: 131 LGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYA 190

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           CSHAGLVEEG + F  M+  +N+ P+ EHYGCMVDLFGRA L+R+AL+L+++MPL P+  
Sbjct: 191 CSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVV 250

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           +WG+L+ AC+IH + EL E   + ++  EP+ DGA + ++NIY+   RW++  +LR  MK
Sbjct: 251 IWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMK 310

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           +R + K  GCS +E+  + YEF   DK H +  +IY+ LDE++ + K  GY
Sbjct: 311 QRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGY 361



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 142/277 (51%), Gaps = 10/277 (3%)

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           N+ V   ++  Y+  G ++    +F        ++DLV W+ +I  Y + D P EA+  F
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFD----QMEEKDLVCWSAMISGYAESDKPQEALNLF 68

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
            +M    ++PD + ++ V+SAC++LG L     IH Y+  N   L   + ++NALIDMY 
Sbjct: 69  SEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKN--GLGGALPVNNALIDMYA 126

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCGN+ +AR VF++M  +NV+SW SMI      G    AL  F +M+   +KP+  T V 
Sbjct: 127 KCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVG 186

Query: 331 VLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-C 388
           VL +C++ G +E G+     +   H I         +VD++ +   +  A  +  +M   
Sbjct: 187 VLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLA 246

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
            +V  + +++    IHG+    L  F+    + +EPD
Sbjct: 247 PNVVIWGSLMAACQIHGE--NELGEFAAKQVLELEPD 281



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 130/251 (51%), Gaps = 10/251 (3%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P EA+ L+ EM + G+ P+  T+  V+ AC +   L   + +H Y  K  L   + V N 
Sbjct: 61  PQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNA 120

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +YA CG + A   +F   Q     R+++SWT++I A+      + A+  F+ M   N
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQ----SRNVISWTSMINAFAIHGDASNALKFFYQMKDEN 176

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++P+G+  V VL ACS  G +  G +    +T+ H N++P    +  ++D++ +   +  
Sbjct: 177 IKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEH-NITPKHEHYGCMVDLFGRANLLRD 235

Query: 278 ARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD-DFTLVCVLNSC 335
           A ++ + MP+  NVV W S++A     G+    L  F   Q L L+PD D  LV + N  
Sbjct: 236 ALELVETMPLAPNVVIWGSLMAACQIHGE--NELGEFAAKQVLELEPDHDGALVQLSNIY 293

Query: 336 A-NIGWLELGK 345
           A +  W ++G+
Sbjct: 294 AKDRRWQDVGE 304


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 192/577 (33%), Positives = 313/577 (54%), Gaps = 17/577 (2%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQ---TQILYD-KIISLSRGNEIENLSLQNPQVYLYNFII 90
           KS+   +Q H+ I+  G  Q+    T++++   I      + +   SLQ+  V+L+N +I
Sbjct: 37  KSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96

Query: 91  Q-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
             C+ N    EA  L+ +M    +LP+ +TL  + K   +  +L  G+ +H  S++T  +
Sbjct: 97  NGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFV 156

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV---KMDYPTEA 206
           S+  V N++M +Y  CG      K+F         R+  SW  LI  Y      ++  E 
Sbjct: 157 SDTVVANSIMSMYCKCGNFDESRKVFD----EMTIRNSGSWNVLIAGYAVSGNCNFREET 212

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACS-KLGDLSLGIKIHRYITDNHF--NLSPDVFIHN 263
                 M    +RPD   +  +L  C   +G    G ++H YI  N     L  DV +  
Sbjct: 213 WEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGC 272

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLK 322
            LIDMY +   +   R+VFD M  +NV SW +MI G    G   EAL +FR MQ + G++
Sbjct: 273 CLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVE 332

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P+  +LV VL +C++   L  G+ +H +  +  +N +  + NAL+DMY+KCG +D A  V
Sbjct: 333 PNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRV 392

Query: 383 FRSMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           F     C+D  S+++MI G  +HGK  +A+ ++ +M Q GI PD +T VG+LSAC  +GL
Sbjct: 393 FEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGL 452

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           V EG   +  +   Y ++P  E   C+VD+ GRAG +  ALD IK++P+ P   VWGAL+
Sbjct: 453 VNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALV 512

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
               IH  +E+ E+    L++ EP+    Y+ ++N+Y+S  RW    ++R+ MK+++++K
Sbjct: 513 SCSIIHGDLEMQELAYRFLIQLEPKNPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRK 572

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
            PGCS + +  + + F   DK+HP +  IY +LD+++
Sbjct: 573 VPGCSWISINNKTHCFYVADKAHPSSTSIYNMLDDLL 609


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/494 (38%), Positives = 293/494 (59%), Gaps = 7/494 (1%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           ++ T+  +L AC ++     G  +H+YS+K  L S ++V N L+ LYA  G +K   K+F
Sbjct: 246 DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVF 305

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
             R +    RDL+SW ++I+AY   + P  AIL F +M  + ++PD + L+ + S  S+L
Sbjct: 306 D-RMYV---RDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQL 361

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
           G++     +  +     + L  D+ I NA++ MY K G + SAR VF+ +P K+V+SWN+
Sbjct: 362 GEIRACRSVQGFTLRKGWFLE-DITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNT 420

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLG--LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           +I+G    G   EA++++  M+  G  +  +  T V VL +C+  G L  G  +H  L K
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLK 480

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
           N +  D F+G +L DMY KCGR+D A  +F  +   +   +  +I     HG   KA+ +
Sbjct: 481 NGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVML 540

Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473
           F EM   G++PD +TFV +LSACSH+GLV+EG   F  M   Y + P  +HYGCMVDL+G
Sbjct: 541 FKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYG 600

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
           RAG +  AL+ IKSMPL PDA +WGALL AC++H  V+L +I  E+L   EPE  G ++L
Sbjct: 601 RAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVL 660

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
           ++N+Y+S  +W+   ++R     + ++KTPG S +EV  +   F  G+++HP   E+Y+ 
Sbjct: 661 LSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRE 720

Query: 594 LDEIMHQSKNHGYI 607
           L  +  + K  GY+
Sbjct: 721 LTALHEKLKMVGYV 734



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 236/454 (51%), Gaps = 30/454 (6%)

Query: 78  LQNPQVYLYNFIIQCLSNAN----PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133
           + N  VY +N +I     A      +   +L+  ML  GL P+  T P VLKAC   +++
Sbjct: 112 IHNRDVYAWNLMISGYGRAGYSSEVIRCFSLF--MLSSGLQPDYRTFPSVLKAC---RNV 166

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
             G ++H  ++K   + +VYV  +L+ LY   G +  V+    F + P   RD+ SW  +
Sbjct: 167 TDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAV--VNARILFDEMP--TRDMGSWNAM 222

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I  Y +     EA L+  D  +A    D + +V +LSAC++ GD + G+ IH Y   +  
Sbjct: 223 ISGYCQSGNAKEA-LTLSDGLRA---MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKH-- 276

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            L  ++F+ N LID+Y + G++   +KVFD M V++++SWNS+I       Q   A+ +F
Sbjct: 277 GLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLF 336

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY-LDKNHINTDGFIGNALVDMYAK 372
           + M+   ++PD  TL+ + +  + +G +   + V  + L K     D  IGNA+V MYAK
Sbjct: 337 QEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAK 396

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG--IEPDEVTFV 430
            G +D A  VF  +  +DV S+  +I G A +G A +A+++++ M + G  I  ++ T+V
Sbjct: 397 LGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWV 456

Query: 431 GVLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
            VL ACS AG + +G K     L      ++   T     + D++G+ G + +AL L   
Sbjct: 457 SVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTS----LADMYGKCGRLDDALSLFYQ 512

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
           +P V ++  W  L+     H   E A ++ + ++
Sbjct: 513 IPRV-NSVPWNTLIACHGFHGHGEKAVMLFKEML 545



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 181/355 (50%), Gaps = 14/355 (3%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N II+    N  PL AI L++EM +  + P+  TL  +     Q   +R  + V  +++
Sbjct: 316 WNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTL 375

Query: 145 KTA-LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +    L ++ + N ++ +YA  GL+ +   +F++       +D++SW T+I  Y +  + 
Sbjct: 376 RKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNW----LPNKDVISWNTIISGYAQNGFA 431

Query: 204 TEAILSFFDMCQ--ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           +EAI  +  M +    +  +    V VL ACS+ G L  G+K+H  +  N   L  DVF+
Sbjct: 432 SEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL--DVFV 489

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
             +L DMY KCG +  A  +F ++P  N V WN++IA     G  ++A+ +F+ M   G+
Sbjct: 490 GTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGV 549

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAF 380
           KPD  T V +L++C++ G ++ G+W    +  ++  T        +VD+Y + G+++ A 
Sbjct: 550 KPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIAL 609

Query: 381 GVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
              +SM  + D   + A++    +HG     L   +      +EP+ V +  +LS
Sbjct: 610 NFIKSMPLQPDASIWGALLSACRVHGNV--DLGKIASEHLFEVEPEHVGYHVLLS 662



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 213/453 (47%), Gaps = 30/453 (6%)

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
           +L+  + +HA  + +  + NV +   L+ LY   G +      F    +    RD+ +W 
Sbjct: 66  NLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHN----RDVYAWN 121

Query: 192 TLIQAYVKMDYPTEAILSF-FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
            +I  Y +  Y +E I  F   M  + L+PD      VL AC  + D   G KIH     
Sbjct: 122 LMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALK 178

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
             F    DV++  +LI +Y + G + +AR +FDEMP +++ SWN+MI+G    G  KEAL
Sbjct: 179 --FGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEAL 236

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
            +   ++ +    D  T+V +L++C   G    G  +H+Y  K+ + ++ F+ N L+D+Y
Sbjct: 237 TLSDGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLY 292

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           A+ G +     VF  M  RD+ S+ ++I    ++ +  +A+ +F EM    I+PD +T +
Sbjct: 293 AEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLI 352

Query: 431 GVLSACSHAGLVEEGCKHF--LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
            + S  S  G +   C+      + + + L+  T     +V ++ + GL+  A  +   +
Sbjct: 353 SLASILSQLGEI-RACRSVQGFTLRKGWFLEDITIGNAVVV-MYAKLGLVDSARAVFNWL 410

Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG------DGAYILMTNIYSSKN 542
           P   D   W  ++     +A+   A   +E     E EG       G ++ +    S   
Sbjct: 411 P-NKDVISWNTIISG---YAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAG 466

Query: 543 RWKEALKLRKKMKERK--VKKTPGCSLVEVYGE 573
             ++ +KL  ++ +    +    G SL ++YG+
Sbjct: 467 ALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGK 499


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 186/527 (35%), Positives = 294/527 (55%), Gaps = 40/527 (7%)

Query: 82  QVYLYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V  +N +I+   N N  +EA+++++ ML     P+ YT P VLKAC    +LRVG QVH
Sbjct: 101 NVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVH 160

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              +K  L +N+++ N L+ +Y  CG ++   K+    Q P   RD+VSW +++  Y + 
Sbjct: 161 DAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD--QMPY--RDVVSWNSMVAGYAQS 216

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               +A+    +M   NL  D   +                            +LSP V 
Sbjct: 217 GQFDDALEICKEMDSLNLNHDAGTMA---------------------------SLSPVV- 248

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
                   Y    N+     +F+ M  KN++SWN MIA   +     EA+ +F +M+  G
Sbjct: 249 -------CYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECG 301

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           +KPD  T+  +L +C ++  L LG+ +H Y++K ++  +  + NAL+DMYAKCG +++A 
Sbjct: 302 MKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEAR 361

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  M+ RDV S+T+M+      G+ + A+ +F++M   G  PD + FV VLSACSH G
Sbjct: 362 DVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTG 421

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           L+++G  +F  M+  Y + P+ EH+ CMVDLFGRAG + EA   IK MP+ P+  VWGAL
Sbjct: 422 LLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGAL 481

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           L AC++H+K+++  +  + L +  P+  G Y+L++NIY+    WK+ + +R  MK+  +K
Sbjct: 482 LSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIK 541

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K PG S VE+ G+ + F  GD+ HP+   IY  LD ++ + K  GYI
Sbjct: 542 KVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYI 588



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 131/282 (46%), Gaps = 13/282 (4%)

Query: 231 ACSKLGDLSLGIKI-----HRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
           AC  + D   GIK       + + + H  + P + I   L+  Y   G    AR +FD  
Sbjct: 40  ACEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIK--LMRAYSAQGETSVARYIFDRS 97

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             KNVV +N MI    +   + EAL IF+ M      PD +T  CVL +C+ +  L +G 
Sbjct: 98  LEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGL 157

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            VH  + K  ++T+ FIGNALV MY KCG + +A  V   M  RDV S+ +M+ G A  G
Sbjct: 158 QVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSG 217

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
           +   AL+I  EM  + +  D  T   +     +  L  E  ++  +M      +     +
Sbjct: 218 QFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERMT-KKNLISW 274

Query: 466 GCMVDLFGRAGLIREALDLIKSMP---LVPDAFVWGALLGAC 504
             M+ ++    +  EA+ L   M    + PDA    +LL AC
Sbjct: 275 NVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 195/575 (33%), Positives = 307/575 (53%), Gaps = 30/575 (5%)

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLP-NTYT 119
           Y K   LS   EI ++      V   + I   +   + +EA+  Y  M+  G+L  N  T
Sbjct: 81  YSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRIT 140

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
              +L        + +G+Q+H   +K    + V+V ++L+ +YA  GL+    ++F   Q
Sbjct: 141 FSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQ 200

Query: 180 ---------------------------HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
                                      H   +RD +SWTT+I   ++     EA+  F D
Sbjct: 201 ERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRD 260

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M Q  +  D      VL+AC  L  L  G +IH  I  + +N   +VF+ +AL+DMY KC
Sbjct: 261 MRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYN--HNVFVGSALVDMYCKC 318

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
            ++  A  VF  M  KNVVSW +M+ G    G  +EA+ +F  MQ  G++PDDFTL  V+
Sbjct: 319 RSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVI 378

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           +SCAN+  LE G   H     + + +   + NAL+ +Y KCG I+ +  +F  M  RD  
Sbjct: 379 SSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEV 438

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+TA++ G A  GKA + +D+F  M   G++PD VTF+ VLSACS AGLVE G ++F  M
Sbjct: 439 SWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESM 498

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
            + + + P ++HY CM+DLFGRAG + EA + I  MP  PD+  W  LL +C+++   E+
Sbjct: 499 LKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEI 558

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
            +   E+L+  +P+    YIL+++IY++K +W    +LR+ M+E+  +K PG S ++   
Sbjct: 559 GKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKS 618

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + Y F   D+S P + +IY  L+++ H+    GY+
Sbjct: 619 KVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYV 653



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 148/546 (27%), Positives = 239/546 (43%), Gaps = 113/546 (20%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           SL NP+ +LYN +I   S    L  I   R +  K   PN+++                 
Sbjct: 34  SLTNPETFLYNNLINAYSK---LGNITYARHVFDKMPQPNSFS----------------- 73

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
                             +NT++  Y+  G +  + ++F         RD VSW +LI  
Sbjct: 74  ------------------WNTMLSAYSKSGDLSTMQEIFSI----MPNRDGVSWNSLISG 111

Query: 197 YVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           YV      EA+ ++  M +   L  + +    +L   S  G + LG +IH  I    F  
Sbjct: 112 YVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIV--KFGF 169

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV------------------------ 291
              VF+ ++L+DMY K G +  A +VFDE+  +NVV                        
Sbjct: 170 GAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHG 229

Query: 292 -------SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
                  SW +MI GL   G   EA+D+FR M+  G+  D +T   VL +C  +  L+ G
Sbjct: 230 MKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEG 289

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           K +HT + ++  N + F+G+ALVDMY KC  +  A  VF+ M  ++V S+TAM+VG   +
Sbjct: 290 KEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQN 349

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------------------- 445
           G + +A+ +F +M + GIEPD+ T   V+S+C++   +EEG                   
Sbjct: 350 GFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVS 409

Query: 446 ---------CKHFLDMSRVYNLQPQTEH--YGCMVDLFGRAGLIREALDLIKSM---PLV 491
                    C    D +++++     +   +  +V  + + G   E +DL + M    L 
Sbjct: 410 NALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLK 469

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVR---FEPEGDGAYILMTNIYSSKNRWKEAL 548
           PDA  + A+L AC     VE  +   E++++     P  D  Y  M +++    R +EA 
Sbjct: 470 PDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSD-HYTCMIDLFGRAGRLEEAK 528

Query: 549 KLRKKM 554
               KM
Sbjct: 529 NFINKM 534



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 119/509 (23%), Positives = 205/509 (40%), Gaps = 69/509 (13%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQTQI------LYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           +++ + K+ H  II++G   H   +      +Y K  S+     +         V     
Sbjct: 284 RALKEGKEIHTLIIRSGY-NHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAM 342

Query: 89  IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           ++    N    EA+ ++ +M   G+ P+ +TL  V+ +C    SL  G Q H  ++ + L
Sbjct: 343 LVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGL 402

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
           +S + V N L+ LY  CG I+  ++LF       + RD VSWT L+  Y +     E I 
Sbjct: 403 ISFITVSNALITLYGKCGSIEDSNQLF----DEMSFRDEVSWTALVSGYAQFGKANETID 458

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F  M    L+PD +  + VLSACS+ G +  G +    +  +H  + P    +  +ID+
Sbjct: 459 LFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDH-GIIPFSDHYTCMIDL 517

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           + + G +  A+   ++MP                                    PD    
Sbjct: 518 FGRAGRLEEAKNFINKMP----------------------------------FSPDSIGW 543

Query: 329 VCVLNSCANIGWLELGKW-VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
             +L+SC   G  E+GKW   + L+ +  N  G+I   L  +YA  G+      + R M+
Sbjct: 544 ATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYI--LLSSIYAAKGKWSNVAQLRRGMR 601

Query: 388 CRDVYSYTAMIVGLAIHGKAW----KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
            +               G +W      + IFS   Q     D++     L   +H  ++E
Sbjct: 602 EKGARKEP---------GFSWIKYKSKVYIFSADDQSSPFSDQI--YAELEKLNHK-MIE 649

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL--VPDAFVWGALL 501
           EG  +  D S V +    +E    +     +  +    L +   +P+  V +  V G   
Sbjct: 650 EG--YVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCH 707

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGA 530
            A K  +K+   EI++ + VRF    DG 
Sbjct: 708 NATKYISKISQREILVRDAVRFHLFKDGT 736


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 186/527 (35%), Positives = 294/527 (55%), Gaps = 40/527 (7%)

Query: 82  QVYLYNFIIQCLSNANP-LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V  +N +I+   N N  +EA+++++ ML     P+ YT P VLKAC    +LRVG QVH
Sbjct: 101 NVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVH 160

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              +K  L +N+++ N L+ +Y  CG ++   K+    Q P   RD+VSW +++  Y + 
Sbjct: 161 DAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD--QMPY--RDVVSWNSMVAGYAQS 216

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               +A+    +M   NL  D   +                            +LSP V 
Sbjct: 217 GQFDDALEICKEMDSLNLNHDAGTMA---------------------------SLSPVV- 248

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
                   Y    N+     +F+ M  KN++SWN MIA   +     EA+ +F +M+  G
Sbjct: 249 -------CYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECG 301

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           +KPD  T+  +L +C ++  L LG+ +H Y++K ++  +  + NAL+DMYAKCG +++A 
Sbjct: 302 MKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEAR 361

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  M+ RDV S+T+M+      G+ + A+ +F++M   G  PD + FV VLSACSH G
Sbjct: 362 DVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTG 421

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           L+++G  +F  M+  Y + P+ EH+ CMVDLFGRAG + EA   IK MP+ P+  VWGAL
Sbjct: 422 LLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGAL 481

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           L AC++H+K+++  +  + L +  P+  G Y+L++NIY+    WK+ + +R  MK+  +K
Sbjct: 482 LSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIK 541

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K PG S VE+ G+ + F  GD+ HP+   IY  LD ++ + K  GYI
Sbjct: 542 KVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYI 588



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 158/346 (45%), Gaps = 41/346 (11%)

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           LMR Y+  G       +F        ++++V +  +I++YV  +   EA+  F  M    
Sbjct: 77  LMRAYSAQGETSVARYIFD----RSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCA 132

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
             PD      VL ACS L +L +G+++H  I      L  ++FI NAL+ MY KCG +  
Sbjct: 133 FNPDHYTFPCVLKACSGLDNLRVGLQVHDAIV--KVGLDTNLFIGNALVAMYGKCGCLRE 190

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           ARKV D+MP ++VVSWNSM+AG    GQF +AL+I + M  L L  D  T+   L+    
Sbjct: 191 ARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMAS-LSPVVC 249

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
              LE  +++H                                 +F  M  +++ S+  M
Sbjct: 250 YTSLENVQYIHN--------------------------------MFERMTKKNLISWNVM 277

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I     +    +A+ +F +M + G++PD VT   +L AC     +  G +         N
Sbjct: 278 IAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG-RRLHKYIEKGN 336

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           L+P       ++D++ + G + EA D+   M L  D   W +++ A
Sbjct: 337 LRPNLLLENALLDMYAKCGCLEEARDVFDKMRL-RDVVSWTSMMSA 381



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 131/282 (46%), Gaps = 13/282 (4%)

Query: 231 ACSKLGDLSLGIKI-----HRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
           AC  + D   GIK       + + + H  + P + I   L+  Y   G    AR +FD  
Sbjct: 40  ACEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIK--LMRAYSAQGETSVARYIFDRS 97

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             KNVV +N MI    +   + EAL IF+ M      PD +T  CVL +C+ +  L +G 
Sbjct: 98  LEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGL 157

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            VH  + K  ++T+ FIGNALV MY KCG + +A  V   M  RDV S+ +M+ G A  G
Sbjct: 158 QVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSG 217

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
           +   AL+I  EM  + +  D  T   +     +  L  E  ++  +M      +     +
Sbjct: 218 QFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERMT-KKNLISW 274

Query: 466 GCMVDLFGRAGLIREALDLIKSMP---LVPDAFVWGALLGAC 504
             M+ ++    +  EA+ L   M    + PDA    +LL AC
Sbjct: 275 NVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/425 (40%), Positives = 260/425 (61%), Gaps = 2/425 (0%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           +RD+VSW T+I    +     +A++   +M  A+LRPD   L  VL   ++  +L  G +
Sbjct: 158 KRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKE 217

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303
           IH Y   N ++   DVFI ++LIDMY KC  +  + +VF  +P  + +SWNS+IAG    
Sbjct: 218 IHGYAIRNGYD--ADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQN 275

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
           G F E L  F++M    +KP+  +   ++ +CA++  L LGK +H Y+ ++  + + FI 
Sbjct: 276 GMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA 335

Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423
           +ALVDMYAKCG I  A  +F  M+  D+ S+TAMI+G A+HG A+ A+ +F  M   G++
Sbjct: 336 SALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVK 395

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           P+ V F+ VL+ACSHAGLV+E  K+F  M++ Y + P  EHY  + DL GR G + EA +
Sbjct: 396 PNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYE 455

Query: 484 LIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543
            I  M + P   VW  LL AC++H  +ELAE V + L   +P+  GAY+L++NIYS+  R
Sbjct: 456 FISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGR 515

Query: 544 WKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603
           WK+A KLR  M+++ +KK P CS +E+  + + F  GDKSHP    I + L  ++ Q + 
Sbjct: 516 WKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMER 575

Query: 604 HGYIL 608
            GY+L
Sbjct: 576 EGYVL 580



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 167/307 (54%), Gaps = 8/307 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ + REM    L P+++TL  VL    +  +L  G+++H Y+++    ++V++ ++L+
Sbjct: 179 DALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLI 238

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA C  +    ++F+       Q D +SW ++I   V+     E +  F  M  A ++
Sbjct: 239 DMYAKCTRVDDSCRVFYM----LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIK 294

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +    ++ AC+ L  L LG ++H YI  + F+   +VFI +AL+DMY KCGNI +AR
Sbjct: 295 PNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD--GNVFIASALVDMYAKCGNIRTAR 352

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +FD+M + ++VSW +MI G    G   +A+ +F+RM+  G+KP+    + VL +C++ G
Sbjct: 353 WIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAG 412

Query: 340 WL-ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS-YTAM 397
            + E  K+ ++      I        A+ D+  + GR+++A+     M      S ++ +
Sbjct: 413 LVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTL 472

Query: 398 IVGLAIH 404
           +    +H
Sbjct: 473 LAACRVH 479



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 184/410 (44%), Gaps = 42/410 (10%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           ML  G  P+    P VLK+C   + LR G+ VH   ++  +  ++Y  N LM +      
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNM------ 54

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE--AILSFFDM-CQANLRPDGMI 224
               +  F   +    QR   S     +    +  P E     +  D+ C+ + R  G+ 
Sbjct: 55  ----YSKFWSLEEGGVQRFCDS-----KMLGGIPEPREIGKCSNSHDLPCELDERVAGI- 104

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN----IPSARK 280
                    + GDL+    I   +     N    VF      D+Y K       + S RK
Sbjct: 105 --------DQNGDLNQMSNILYQV-----NTYKKVFDEGKTSDVYSKKEKESYYLGSLRK 151

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VF+ MP +++VSWN++I+G    G  ++AL + R M    L+PD FTL  VL   A    
Sbjct: 152 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 211

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L  GK +H Y  +N  + D FIG++L+DMYAKC R+D +  VF  +   D  S+ ++I G
Sbjct: 212 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAG 271

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK--HFLDMSRVYNL 458
              +G   + L  F +M    I+P+ V+F  ++ AC+H   +  G +   ++  SR    
Sbjct: 272 CVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSR---F 328

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
                    +VD++ + G IR A  +   M L  D   W A++    +H 
Sbjct: 329 DGNVFIASALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHG 377



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 123/265 (46%), Gaps = 11/265 (4%)

Query: 41  KQFHAFIIKTGSPQH-----QTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           K+ H + I+ G             +Y K   +     +  +  Q+  +   + I  C+ N
Sbjct: 216 KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQN 275

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
               E +  +++MLI  + PN  +   ++ AC    +L +G+Q+H Y +++    NV++ 
Sbjct: 276 GMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA 335

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           + L+ +YA CG I+    +F          D+VSWT +I  Y    +  +AI  F  M  
Sbjct: 336 SALVDMYAKCGNIRTARWIF----DKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEV 391

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             ++P+ +  + VL+ACS  G +    K    +T + + + P +  + A+ D+  + G +
Sbjct: 392 EGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQD-YRIIPGLEHYAAVADLLGRVGRL 450

Query: 276 PSARKVFDEMPVKNVVS-WNSMIAG 299
             A +   +M ++   S W++++A 
Sbjct: 451 EEAYEFISDMHIEPTGSVWSTLLAA 475


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 213/597 (35%), Positives = 328/597 (54%), Gaps = 20/597 (3%)

Query: 22  LSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI------LYDKIISLSRGNEIEN 75
           LS   +   L+  K  GQ  + HA++I+         I      LY K  ++     I  
Sbjct: 357 LSAFTEFSNLKEGKRKGQ--EVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQ 414

Query: 76  LSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
           L + +     +N II  L  N    EA+A +  M   G++P+ +++   L +C     + 
Sbjct: 415 L-MPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIM 473

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
           +GQQ+H   +K  L  +V V N L+ LYA    ++   K+F        + D VSW + I
Sbjct: 474 LGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFL----MPEYDQVSWNSFI 529

Query: 195 QAYVKMDYPT-EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
            A    +    +AI  F +M QA  +P+ +  + +LSA S L  L LG +IH  I  +  
Sbjct: 530 GALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKH-- 587

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDI 312
           +++ D  I N L+  Y KC  +     +F  M  + + VSWN+MI+G  H G   +A+ +
Sbjct: 588 SVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGL 647

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
              M   G + DDFTL  VL++CA++  LE G  VH    +  +  +  +G+ALVDMYAK
Sbjct: 648 VWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAK 707

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           CG+ID A   F  M  R++YS+ +MI G A HG   KAL +F++M Q G  PD VTFVGV
Sbjct: 708 CGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGV 767

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           LSACSH GLV+EG +HF  M  VY L P+ EH+ CMVDL GRAG +++  + IK+MP+ P
Sbjct: 768 LSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNP 827

Query: 493 DAFVWGALLGA-CKIHAK-VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
           +A +W  +LGA C+ +++  EL     + L+  EP     Y+L++N++++  +W++  + 
Sbjct: 828 NALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEA 887

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R  M+  +VKK  GCS V +    + F  GD++HP+  +IY  L EIM++ ++ GY+
Sbjct: 888 RLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYV 944



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 199/407 (48%), Gaps = 23/407 (5%)

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
           S ++    Q+H    KT L S+V+  NTL+ ++   G + +  KLF        Q++LVS
Sbjct: 52  SCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFD----EMPQKNLVS 107

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD--LSLGIKIHRY 247
           W+ L+  Y +   P EA + F  +  A L P+   +   L AC +LG   L LG++IH  
Sbjct: 108 WSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGL 167

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKC-GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
           I+ + +  + D+ + N L+ MY  C  +I  AR+VF+E+ +K   SWNS+I+    RG  
Sbjct: 168 ISKSPY--ASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDA 225

Query: 307 KEALDIFRRMQ----GLGLKPDDFT---LVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
             A  +F  MQ     L  +P+++T   LV V  S  + G L L + +   ++K+    D
Sbjct: 226 ISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCG-LTLLEQMLARIEKSSFVKD 284

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            ++G+ALV  +A+ G ID A  +F  M  R+  +   ++VGLA   +  +A  IF EM  
Sbjct: 285 LYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKD 344

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY----GCMVDLFGRA 475
           + +E +  ++  +LSA +    ++EG +   ++          + +      +V+L+ + 
Sbjct: 345 L-VEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKC 403

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
             I  A  + + MP   D   W +++     + + E A      + R
Sbjct: 404 NAIDNARSIFQLMP-SKDTVSWNSIISGLDHNERFEEAVACFHTMRR 449



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 129/500 (25%), Positives = 224/500 (44%), Gaps = 42/500 (8%)

Query: 30  RLESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYN 87
           R   S +V    Q H  I KTG  S       L +  +        + L  + PQ  L +
Sbjct: 48  RYRDSCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVS 107

Query: 88  FIIQCL-----SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ--SQSLRVGQQVH 140
           +   CL      N  P EA  L+R ++  GLLPN Y +   L+AC +     L++G ++H
Sbjct: 108 W--SCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIH 165

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGL-IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
               K+   S++ + N LM +Y+ C   I    ++F         +   SW ++I  Y +
Sbjct: 166 GLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVF----EEIKMKTSASWNSIISVYCR 221

Query: 200 MDYPTEAILSFFDM----CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
                 A   F  M     + N RP+      +++    L D  L +           + 
Sbjct: 222 RGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSF 281

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             D+++ +AL+  + + G I SA+ +F++M  +N V+ N ++ GL  + Q +EA  IF+ 
Sbjct: 282 VKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKE 341

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKW----VHTYLDKNH-INTDGFIGNALVDMY 370
           M+ L ++ +  +   +L++      L+ GK     VH YL +N  ++    IGNALV++Y
Sbjct: 342 MKDL-VEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLY 400

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           AKC  ID A  +F+ M  +D  S+ ++I GL  + +  +A+  F  M + G+ P + + +
Sbjct: 401 AKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVI 460

Query: 431 GVLSACSHAGLV-------EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
             LS+C+  G +        EG K  LD+    +          ++ L+     + E   
Sbjct: 461 STLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVS--------NALLTLYAETDCMEEYQK 512

Query: 484 LIKSMPLVPDAFVWGALLGA 503
           +   MP   D   W + +GA
Sbjct: 513 VFFLMPEY-DQVSWNSFIGA 531



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 154/306 (50%), Gaps = 19/306 (6%)

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           L+ DVF  N L++++++ GN+ SA+K+FDEMP KN+VSW+ +++G    G   EA  +FR
Sbjct: 70  LTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFR 129

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIG--WLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
            +   GL P+ + +   L +C  +G   L+LG  +H  + K+   +D  + N L+ MY+ 
Sbjct: 130 GIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSH 189

Query: 373 C-GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE----PDEV 427
           C   ID A  VF  +K +   S+ ++I      G A  A  +FS M +   E    P+E 
Sbjct: 190 CSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEY 249

Query: 428 TFVGVLS-ACSHAGLVEEGCKHFLDM-SRVYNLQPQTEHY--GCMVDLFGRAGLIREALD 483
           TF  +++ ACS   LV+ G      M +R+       + Y    +V  F R GLI  A  
Sbjct: 250 TFCSLVTVACS---LVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKM 306

Query: 484 LIKSMPLVPDAFVWGALLGACKIHAKVELAEIV--MENLVRFEPEGDGAYILMTNIYSSK 541
           + + M       + G ++G  + H   E A+I   M++LV        +Y ++ + ++  
Sbjct: 307 IFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINA---SSYAVLLSAFTEF 363

Query: 542 NRWKEA 547
           +  KE 
Sbjct: 364 SNLKEG 369


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 181/484 (37%), Positives = 290/484 (59%), Gaps = 10/484 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ ++R M+ +GL PN+ T+   L    + +  + G++VH  S++  L S++++ N+L+
Sbjct: 126 DALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLI 185

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA  G       +F+        +++VSW  +I  + +  +   A+     M      
Sbjct: 186 DMYAKSGHSTEASNVFY----KLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGEL 241

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           P+ +    VL AC+++G +  G +IH R I   H   + D+F+ NAL DMY K G++  A
Sbjct: 242 PNSVTFTNVLPACARMGLVRPGKEIHARSI---HMGCAFDLFVSNALTDMYAKSGHLKLA 298

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           R VFD   +++ VS+N +I G +      E+L +F  MQ +GLK D+ + +  L++CAN+
Sbjct: 299 RNVFD-TSLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANL 357

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             ++ GK +H +L +   +   F+ N+L+D Y KCGRI  A  +F  M  +DV S+  MI
Sbjct: 358 TAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMI 417

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
           +G  + G+   A+D+F  M +  +E D V+F+ VLSACSH GL+E+G K+F D  +   +
Sbjct: 418 LGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYF-DELKARGI 476

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +P   HY CMVDL GRAGL+ EA +LIK +P+VPDA +WGALLGAC+I+  +ELA    E
Sbjct: 477 EPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAE 536

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
           +L   +PE  G Y L++N+Y+   RW EA ++R+ MK R VKK+PGCS V++  + + F 
Sbjct: 537 HLFELKPEHSGYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPGCSWVQIGEQAHAFV 596

Query: 579 KGDK 582
            G+K
Sbjct: 597 VGEK 600



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/486 (29%), Positives = 246/486 (50%), Gaps = 19/486 (3%)

Query: 83  VYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
            +L+N +I+  S A     + +Y +M+  G+ P+ +T P+VLKAC  +  +R G++VH  
Sbjct: 7   AFLWNTLIRGYSIAGVGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGS 66

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +K    S+V+V NTL+  Y  CG ++   ++F        ++DLVSW T+I  +    +
Sbjct: 67  VVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVF----DEMPEKDLVSWNTMIGVFSVNGW 122

Query: 203 PTEAILSFFD-MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
                L  F  M    L+P+ + +   L    +L     G ++H   +     L  D+FI
Sbjct: 123 HYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHG--SSIRMGLESDIFI 180

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            N+LIDMY K G+   A  VF ++  KNVVSWN+MIA          A+ + R+MQ  G 
Sbjct: 181 ANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGE 240

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
            P+  T   VL +CA +G +  GK +H          D F+ NAL DMYAK G +  A  
Sbjct: 241 LPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARN 300

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF +   RD  SY  +IVG +      ++L +FSEM  +G++ D V+F+G LSAC++   
Sbjct: 301 VFDT-SLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTA 359

Query: 442 VEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLF---GRAGLIREALDLIKSMPLVPDAFVW 497
           +++G + H   + +++++     +   ++D +   GR GL R   D + +     D   W
Sbjct: 360 IKQGKEIHGFLLRKLFHIHLFVAN--SLLDFYTKCGRIGLARNIFDRMTN----KDVASW 413

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDG-AYILMTNIYSSKNRWKEALKLRKKMKE 556
             ++    +  +++ A  + EN+ + + E D  ++I + +  S     ++  K   ++K 
Sbjct: 414 NTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKA 473

Query: 557 RKVKKT 562
           R ++ T
Sbjct: 474 RGIEPT 479


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/572 (33%), Positives = 318/572 (55%), Gaps = 11/572 (1%)

Query: 41  KQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           +Q H  ++++G        +    +Y K   L    ++ ++  Q   V     I   + N
Sbjct: 131 RQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQN 190

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
               +A  L+ EM+  G+ P++ T    L +  +S SL+  +++H Y ++  ++ +VY+ 
Sbjct: 191 GFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLN 250

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           + L+ LY  C       K+F+       + D+V +T +I  YV      +A+  F  + Q
Sbjct: 251 SALIDLYFKCRDAVMACKMFNL----STKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQ 306

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             + P+ +    +L AC+ L  + LG ++H YI  N   L     + +A+++MY KCG +
Sbjct: 307 KKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNE--LEEKCPVGSAIMNMYAKCGRL 364

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A  +F  + +K+ + WNS+I   +  G+ +EA+ +FR+M   G+K D  T+   L++C
Sbjct: 365 DLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSAC 424

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           ANI  L  GK +H ++ K    +D F  +AL++MYAKCG+++ A  VF  M+ ++  ++ 
Sbjct: 425 ANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWN 484

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           ++I     HG    +L +F  M + GI+PD +TF+ +LS+C HAG VE+G ++F  M+  
Sbjct: 485 SIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEE 544

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           Y +  Q EHY CM DLFGRAG + EA ++I SMP  P A VWG LLGAC++H  VELAE+
Sbjct: 545 YGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEV 604

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
               L+  EP+  G Y+L+T++ +   +W+   K++  MKER V+K PGCS +EV     
Sbjct: 605 ASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNNTTC 664

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F   D SHP++ +IY LL  ++ + +  GY+
Sbjct: 665 VFFAADGSHPESPQIYSLLKSLLLELRKVGYV 696



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 224/460 (48%), Gaps = 42/460 (9%)

Query: 85  LYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           + N  +QC  + +   AI L+++M+     P++ T   VL        +  G+Q+H   +
Sbjct: 82  MINGYVQCGESDS---AIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVV 138

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           ++ L     V NTL+ +Y+    +    KLF        Q DLV W  +I  YV+  +  
Sbjct: 139 RSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDM----MPQIDLVVWNRMIGGYVQNGFMD 194

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           +A + F +M  A ++PD +     L + ++   L    +IH YI  +   L  DV++++A
Sbjct: 195 DASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVIL--DVYLNSA 252

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LID+Y KC +   A K+F+     ++V + +MI+G    G  K+AL+IFR +    + P+
Sbjct: 253 LIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPN 312

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             T   +L +CA +  ++LG+ +H Y+ KN +     +G+A+++MYAKCGR+D A  +F 
Sbjct: 313 ALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFG 372

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA----- 439
            +  +D   + ++I   +  GK  +A+ +F +M   G++ D VT    LSAC++      
Sbjct: 373 RISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHY 432

Query: 440 -----GLVEEGC--KHFLDMSRVYN-----------------LQPQTE-HYGCMVDLFGR 474
                G + +G       DMS + N                 +Q + E  +  ++  +G 
Sbjct: 433 GKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGY 492

Query: 475 AGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVE 511
            G + ++L L  +M    + PD   +  +L +C    +VE
Sbjct: 493 HGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVE 532



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 189/384 (49%), Gaps = 13/384 (3%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQV 83
           P L  S S+ Q+K+ H +I++ G             LY K        ++ NLS +   V
Sbjct: 220 PSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIV 279

Query: 84  YLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
                I   + N    +A+ ++R +L K ++PN  T   +L AC    ++++G+++H Y 
Sbjct: 280 IYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYI 339

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K  L     V + +M +YA CG +   H +F       + +D + W ++I ++ +   P
Sbjct: 340 IKNELEEKCPVGSAIMNMYAKCGRLDLAHLIF----GRISIKDAICWNSIITSFSQDGKP 395

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            EAI  F  M    ++ D + +   LSAC+ +  L  G +IH ++    F    D+F  +
Sbjct: 396 EEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFE--SDLFDMS 453

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           ALI+MY KCG +  AR VF+ M  KN V+WNS+IA   + G   ++L +F  M   G++P
Sbjct: 454 ALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQP 513

Query: 324 DDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           D  T + +L+SC + G +E G ++     ++  I         + D++ + G +D+AF V
Sbjct: 514 DHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEV 573

Query: 383 FRSMKCRDVYSYTAMIVGLA-IHG 405
             SM      S    ++G   +HG
Sbjct: 574 ITSMPFPPAASVWGTLLGACRVHG 597



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 193/407 (47%), Gaps = 10/407 (2%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           ML  G+ P+ YT P V+K C    ++R+G+ +    ++     +++V ++L++LYA  G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           I+   + F         +D V W  +I  YV+      AI  F DM  +  +PD +    
Sbjct: 61  IEDARRFF----DKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFAC 116

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VLS       +  G ++H  +  +  +  P   + N L+ +Y K   +  ARK+FD MP 
Sbjct: 117 VLSISCSEAMVEYGRQLHGLVVRSGLDFVP--LVGNTLVTVYSKGRQLGDARKLFDMMPQ 174

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
            ++V WN MI G    G   +A  +F  M   G+KPD  T    L S A    L+  K +
Sbjct: 175 IDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEI 234

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H Y+ ++ +  D ++ +AL+D+Y KC     A  +F      D+  YTAMI G  ++G  
Sbjct: 235 HGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMN 294

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN-LQPQTEHYG 466
             AL+IF  + Q  + P+ +TF  +L AC  AGL        L    + N L+ +     
Sbjct: 295 KDALEIFRWLLQKKMIPNALTFSSILPAC--AGLAAIKLGRELHGYIIKNELEEKCPVGS 352

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
            +++++ + G +  A  LI     + DA  W +++ +     K E A
Sbjct: 353 AIMNMYAKCGRLDLA-HLIFGRISIKDAICWNSIITSFSQDGKPEEA 398



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 163/347 (46%), Gaps = 35/347 (10%)

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M    + PD      V+  C+ L ++ LG  I   I +  F+L  D+F+ ++LI +Y   
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDL--DMFVASSLIKLYADN 58

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G I  AR+ FD+M  K+ V WN MI G    G+   A+ +F+ M     KPD  T  CVL
Sbjct: 59  GCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVL 118

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           +   +   +E G+ +H  + ++ ++    +GN LV +Y+K  ++  A  +F  M   D+ 
Sbjct: 119 SISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLV 178

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGL 441
            +  MI G   +G    A  +F+EM   GI+PD +TF   L + +           H  +
Sbjct: 179 VWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYI 238

Query: 442 VEEG-----------------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREAL 482
           V  G                 C+  +   +++NL  + +   Y  M+  +   G+ ++AL
Sbjct: 239 VRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDAL 298

Query: 483 DLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           ++ + +    ++P+A  + ++L AC   A ++L   +   +++ E E
Sbjct: 299 EIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELE 345


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 183/520 (35%), Positives = 307/520 (59%), Gaps = 45/520 (8%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF--RQH 180
           +L+ C  ++ L++   +HA+ ++T L  +V+  +   RL A C  I +   L H+  R  
Sbjct: 23  LLECCSNARDLKI---IHAHMLRTHLFFDVFAAS---RLIAFC--IDSTTNLLHYAIRVA 74

Query: 181 PQAQR-DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
            Q Q  +L  +  LI+     + P  +   +    +  L PD +    ++ AC++L +  
Sbjct: 75  SQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAP 134

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYL----------------------------- 270
           +G++ H     + F    D ++ N+L+ MY                              
Sbjct: 135 MGMQTHGQAIKHGF--EQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAG 192

Query: 271 --KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
             +CG+  SAR++FD MP +N+V+W++MI+G      F++A++ F  +Q  G+  ++  +
Sbjct: 193 YHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVM 252

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
           V V++SCA++G L +G+  H Y+ +N ++ +  +G A+VDMYA+CG +++A  VF  +  
Sbjct: 253 VGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPE 312

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           +DV  +TA+I GLA+HG A KAL  FSEM++ G  P ++TF  VL+ACSHAG+VE G + 
Sbjct: 313 KDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEI 372

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M R + ++P+ EHYGCMVDL GRAG +R+A   +  MP+ P+A +W ALLGAC+IH 
Sbjct: 373 FESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHK 432

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
            VE+ E V + L+  +PE  G Y+L++NIY+  N+WK+   +R+ MK++ V+K PG SL+
Sbjct: 433 NVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLI 492

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDE-IMHQSKNHGYI 607
           E+ G+ +EF  GDK+HP+  +I ++ ++ I+ + K  GY+
Sbjct: 493 EIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYV 532



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 175/333 (52%), Gaps = 35/333 (10%)

Query: 78  LQNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +QNP +++YN +I+ C ++ NP  +   Y + L  GLLP+  T P+++KAC Q ++  +G
Sbjct: 77  IQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMG 136

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-------------------- 176
            Q H  ++K     + YV N+L+ +YA  G I A   +F                     
Sbjct: 137 MQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRC 196

Query: 177 ---------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
                    F + P  +R+LV+W+T+I  Y + +   +A+ +F  +    +  +  ++V 
Sbjct: 197 GDAKSARELFDRMP--ERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVG 254

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           V+S+C+ LG L++G K H Y+  N   LS ++ +  A++DMY +CGN+  A  VF+++P 
Sbjct: 255 VISSCAHLGALAMGEKAHEYVMRN--KLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPE 312

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K+V+ W ++IAGL   G  ++AL  F  M   G  P D T   VL +C++ G +E G  +
Sbjct: 313 KDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEI 372

Query: 348 HTYLDKNH-INTDGFIGNALVDMYAKCGRIDQA 379
              + ++H +         +VD+  + G++ +A
Sbjct: 373 FESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKA 405



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 99/201 (49%), Gaps = 6/201 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+  +  +  +G++ N   +  V+ +C    +L +G++ H Y M+  L  N+ +   ++
Sbjct: 232 KAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVV 291

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG ++    +  F Q P  ++D++ WT LI       Y  +A+  F +M +    
Sbjct: 292 DMYARCGNVEKA--VMVFEQLP--EKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFV 347

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P  +    VL+ACS  G +  G++I   +  +H  + P +  +  ++D+  + G +  A 
Sbjct: 348 PRDITFTAVLTACSHAGMVERGLEIFESMKRDH-GVEPRLEHYGCMVDLLGRAGKLRKAE 406

Query: 280 KVFDEMPVK-NVVSWNSMIAG 299
           K   +MPVK N   W +++  
Sbjct: 407 KFVLKMPVKPNAPIWRALLGA 427


>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 703

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 207/611 (33%), Positives = 320/611 (52%), Gaps = 65/611 (10%)

Query: 42  QFHAFIIKTGSPQHQTQILYDKIISL---------SRGNEIENLSLQNPQVYLYNFIIQ- 91
           Q HA  +  G  +H   IL  +++S+         S  +   + +L  P    YN +I  
Sbjct: 94  QLHALSLSLGLSRHP--ILLPRLLSVYTSHPSLLPSAASVAADSTLPLP----YNVLISS 147

Query: 92  CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
           CL +  PL+A+A Y+EM   G+LP+ +T P VL+AC +++ L +G+ VH ++    +  N
Sbjct: 148 CLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGN 207

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
           ++  N LM +YA CG + +  K+F        QRD+VSW ++I +Y  +    EA+  F 
Sbjct: 208 LFFQNALMSMYAKCGDLASARKVFD----GMVQRDVVSWNSMISSYAAVGQWAEAMELFR 263

Query: 212 -----------------------------------DMCQANLRPDGMILVIVLSACSKLG 236
                                              +M +     D + LVI L+ACS++G
Sbjct: 264 RMRDEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNACSRVG 323

Query: 237 DLSLGIKIH----RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
            L LG +IH    R   D   ++S      NALI MY +C ++  AR +F  +    VV+
Sbjct: 324 WLRLGKEIHGLAVRMCCDQVESVS------NALITMYARCKDMECARMLFRMLECPGVVT 377

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WN+M++        +EA  IFR M   G+KP+  T+V  L  CA +  L+ G+ +H ++ 
Sbjct: 378 WNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIV 437

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K+       + N+L+DMY+K GR+  A  VF +M   D+ SYT+MI G  + GK   AL 
Sbjct: 438 KHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALR 497

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           +F +M   GI+PD +  V VLSACSH+GLV EG + F  M   Y ++PQ EHY CM+DL+
Sbjct: 498 LFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLY 557

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
            RAGL+ +A +++   P  P + +W AL+GAC     +E+ E     L+    E  G Y+
Sbjct: 558 ARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGERAARKLLEMRTENAGHYV 617

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           L+ N+Y++   W E   +RK M++  V K PG +  ++   F  F  GD+S+P   EIY 
Sbjct: 618 LIANMYAAAGCWDELATVRKLMRDLGVTKAPGLAWTDLGNGFTPFLVGDRSNPLAPEIYV 677

Query: 593 LLDEIMHQSKN 603
           +LDE+  Q +N
Sbjct: 678 VLDELSEQMRN 688



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 214/451 (47%), Gaps = 62/451 (13%)

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV-CGLIKAVHKLFHFRQHPQAQRDLVSWT 191
           LR+G Q+HA S+   L  +  +   L+ +Y     L+ +   +      P      + + 
Sbjct: 89  LRLGVQLHALSLSLGLSRHPILLPRLLSVYTSHPSLLPSAASVAADSTLP------LPYN 142

Query: 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
            LI + ++   P +A+ ++ +M +  + PD      VL AC++  +L LG  +H +    
Sbjct: 143 VLISSCLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGA 202

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
              +  ++F  NAL+ MY KCG++ SARKVFD M  ++VVSWNSMI+     GQ+ EA++
Sbjct: 203 --GMDGNLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAME 260

Query: 312 IFRRMQ----------------------------GL-------GLKPDDFTLVCVLNSCA 336
           +FRRM+                            GL       G + D  TLV  LN+C+
Sbjct: 261 LFRRMRDEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNACS 320

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            +GWL LGK +H    +   +    + NAL+ MYA+C  ++ A  +FR ++C  V ++  
Sbjct: 321 RVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTWNT 380

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-------CKHF 449
           M+   A+   A +A  IF EM   G++P+ VT V  L+ C+    ++ G        KH 
Sbjct: 381 MLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHG 440

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
               R+         +  ++D++ ++G +  A ++  +M    D   + +++    +  K
Sbjct: 441 FKGYRLL--------WNSLIDMYSKSGRLSVAQNVFDTMDDC-DMISYTSMIAGYGMQGK 491

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSS 540
             +A  + E ++    + D  +I+M  + S+
Sbjct: 492 GTVALRLFEQMIDSGIKPD--HIIMVTVLSA 520


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 192/591 (32%), Positives = 311/591 (52%), Gaps = 12/591 (2%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTG-SP----QHQTQILYDKIISLSRGNEIENLS 77
           +L H       +K + + KQ HA +I  G +P     +    +Y K   L    ++ +  
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTM 66

Query: 78  LQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
            Q   V     I     N+   EAI  +  M I G +P  +     ++AC    S+ +G+
Sbjct: 67  PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGK 126

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           Q+H  ++K  + S ++V + L  +Y+ CG +    K+F         +D VSWT +I  Y
Sbjct: 127 QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFE----EMPCKDEVSWTAMIDGY 182

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            K+    EA+L+F  M    +  D  +L   L AC  L     G  +H  +    F    
Sbjct: 183 SKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFE--S 240

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFD-EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           D+F+ NAL DMY K G++ SA  VF  +   +NVVS+  +I G     Q ++ L +F  +
Sbjct: 241 DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +  G++P++FT   ++ +CAN   LE G  +H  + K + + D F+ + LVDMY KCG +
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           + A   F  +      ++ +++     HG    A+  F  M   G++P+ +TF+ +L+ C
Sbjct: 361 EHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGC 420

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SHAGLVEEG  +F  M + Y + P  EHY C++DL GRAG ++EA + I  MP  P+AF 
Sbjct: 421 SHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFG 480

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W + LGAC+IH   E+ ++  E LV+ EP+  GA +L++NIY+++ +W++   +R +M++
Sbjct: 481 WCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRD 540

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             VKK PG S V+V  + + F   D SH +   IY+ LD ++ Q K  GY+
Sbjct: 541 GNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYV 591



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 204/390 (52%), Gaps = 9/390 (2%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           +L +T  L +V++   +++ LR G+Q+HA  +        ++ N L+ +Y+ CG +    
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
           KLF        QR+LVSWT +I    +    +EAI +F  M      P        + AC
Sbjct: 61  KLF----DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRAC 116

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           + LG + +G ++H       F +  ++F+ + L DMY KCG +  A KVF+EMP K+ VS
Sbjct: 117 ASLGSIEMGKQMHCLAL--KFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS 174

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W +MI G +  G+F+EAL  F++M    +  D   L   L +C  +   + G+ VH+ + 
Sbjct: 175 WTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV 234

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFR-SMKCRDVYSYTAMIVGLAIHGKAWKAL 411
           K    +D F+GNAL DMY+K G ++ A  VF    +CR+V SYT +I G     +  K L
Sbjct: 235 KLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGL 294

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
            +F E+ + GIEP+E TF  ++ AC++   +E+G +    + ++ N          +VD+
Sbjct: 295 SVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI-NFDEDPFVSSILVDM 353

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           +G+ GL+  A+     +   P    W +L+
Sbjct: 354 YGKCGLLEHAIQAFDEIG-DPTEIAWNSLV 382


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 205/580 (35%), Positives = 317/580 (54%), Gaps = 44/580 (7%)

Query: 33  SSKSVGQLKQFHAFIIKTG------SPQHQTQILYDKIISLSRGNEI-ENLSLQNPQVYL 85
           ++KS+   K  HA +I+T       S  ++   +Y K+ SL     + + + ++N  V  
Sbjct: 76  NAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNV-VSW 134

Query: 86  YNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
              I     + +  EA+  + EM   G+ PN +T   +L AC     L V  + H   +K
Sbjct: 135 TAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPAC---TDLEVLGEFHDEIVK 191

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
               SNV+V N L+ +YA  G I+   +LF        QRD+VSW  +I  YV+     +
Sbjct: 192 GGFESNVFVGNGLVDMYAKRGCIEFARELFD----KMPQRDVVSWNAMIAGYVQNGLIED 247

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH------------- 252
           A+  F    Q   + D +    +++  ++ GD+   +++   + + +             
Sbjct: 248 ALKLF----QEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQ 303

Query: 253 ----------FNLSPD--VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
                     F + P+  V   NA+I  + + G +  A K+F  MP  NVVSWN+MIAG 
Sbjct: 304 NGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGY 363

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
           +  GQ + AL +F +MQ + +KP+  T   VL +CA +  LE G   H  + ++   +D 
Sbjct: 364 SQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDV 423

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            +GN LV MYAKCG I+ A  VF  M+ +D  S +AMIVG AI+G + ++L++F +M   
Sbjct: 424 LVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFT 483

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
           G++PD VTFVGVLSAC HAGLV+EG ++F  M+R Y++ P  EHYGCM+DL GRAG   E
Sbjct: 484 GLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDE 543

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540
           A DLI  MP+ PDA +WG+LL AC+ H  ++L E V ++L+   P+    Y+L++NIY++
Sbjct: 544 ANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAA 603

Query: 541 KNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
             RW +   +R +MK+RKVKK  GCS + +  + + F  G
Sbjct: 604 AGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLVG 643



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 230/485 (47%), Gaps = 74/485 (15%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL-LSNVYVFNTL 158
           EA+ + ++M+  G+ P++ T   +L+ C  ++SL   + +HA+ ++T     ++ + N L
Sbjct: 47  EALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKL 106

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y   G +    ++F   + P   +++VSWT +I AY + ++  EA+  F++M    +
Sbjct: 107 VSIYVKLGSLVEARRVFD--EMP--VKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGI 162

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           +P+      +L AC+   DL +  + H  I    F    +VF+ N L+DMY K G I  A
Sbjct: 163 QPNHFTFASILPACT---DLEVLGEFHDEIVKGGF--ESNVFVGNGLVDMYAKRGCIEFA 217

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           R++FD+MP ++VVSWN+MIAG    G  ++AL +F+ +     K D  T   ++   A  
Sbjct: 218 RELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIP----KRDVITWNTMMAGYAQC 273

Query: 339 GWLELG-KWVHTYLDKNHINTDGFIG--------------------------NALVDMYA 371
           G +E   +      ++N ++ +  I                           NA++  +A
Sbjct: 274 GDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFA 333

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           + G++++A  +F++M   +V S+ AMI G + +G+A  AL +F +M  V ++P+  TF  
Sbjct: 334 QNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAI 393

Query: 432 VLSACSHAGLVEEG----------------------------CKHFLDMSRVYNLQPQTE 463
           VL AC+   ++E+G                            C    D  +V++   Q +
Sbjct: 394 VLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQD 453

Query: 464 HYGCMVDLFGRA--GLIREALDLIKSMP---LVPDAFVWGALLGACKIHAKVELAEIVME 518
                  + G A  G  +E+L+L + M    L PD   +  +L AC     V+      +
Sbjct: 454 SASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFD 513

Query: 519 NLVRF 523
            + RF
Sbjct: 514 IMTRF 518



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 130/297 (43%), Gaps = 38/297 (12%)

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           + ++  L  +G+ +EAL I + M   G+ P   T   +L  C N   L   K +H ++ +
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92

Query: 354 NHIN-TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
                 D  +GN LV +Y K G + +A  VF  M  ++V S+TAMI   A H    +AL 
Sbjct: 93  TQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALG 152

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSH-----------------------AGLVE----EG 445
            F EM  VGI+P+  TF  +L AC+                         GLV+     G
Sbjct: 153 FFYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRG 212

Query: 446 CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           C  F     +++  PQ +   +  M+  + + GLI +AL L + +P   D   W  ++  
Sbjct: 213 CIEF--ARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIP-KRDVITWNTMMAG 269

Query: 504 CKIHAKVELAEIVMENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
                 VE A  + E +    PE +  ++  M   Y      KEA KL + M ER V
Sbjct: 270 YAQCGDVENAVELFEKM----PEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNV 322


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 189/533 (35%), Positives = 301/533 (56%), Gaps = 15/533 (2%)

Query: 42  QFHAFIIKTG----SPQHQTQI-LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H++I KTG    S      I +Y KI  +     +         + ++  +I   + +
Sbjct: 370 QLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQS 429

Query: 97  NPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
                A+ L++ ML +GL P+ +    VL       SL +G+ +H Y +K  L +++ V 
Sbjct: 430 GSTGRAVELFQRMLQEGLRPDKFCSSSVLSII---DSLSLGRLIHCYILKIGLFTDISVG 486

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           ++L  +Y+ CG ++  + +F   Q P   +D VSW ++I  + + D+  +A+  F +M  
Sbjct: 487 SSLFTMYSKCGSLEESYTVF--EQMPD--KDNVSWASMITGFSEHDHAEQAVQLFREMLL 542

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             +RPD M L   L+ACS L  L  G ++H Y       +  +V +  AL++MY KCG I
Sbjct: 543 EEIRPDQMTLTAALTACSALHSLEKGKEVHGYAL--RARVGKEVLVGGALVNMYSKCGAI 600

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             AR+VFD +P K+  S +S+++G    G  ++AL +F  ++   L  D FT+  V+ + 
Sbjct: 601 VLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAV 660

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A +  L++G  +H  + K  +N +  +G++LV MY+KCG ID+   VF  ++  D+ S+T
Sbjct: 661 AILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWT 720

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           AMIV  A HGK  +AL ++  M + G +PD VTFVGVLSACSH G+VEEG  H   M++ 
Sbjct: 721 AMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKE 780

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           Y ++P   HY CMVDL GR+G ++EA   I +MP+ PDA +WG LL ACK+H  +EL  +
Sbjct: 781 YGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRL 840

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
             + ++  EP   GAY+ ++NI +    W++ +K+R  M+   VKK PG S V
Sbjct: 841 AAKRVIELEPCEAGAYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPGWSSV 893



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/460 (29%), Positives = 227/460 (49%), Gaps = 44/460 (9%)

Query: 82  QVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V  +N II   + N     A+ L+ +M  +  +PN++T   +L AC   + L  G+ V 
Sbjct: 212 NVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQ 271

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            + +K     +V+V   ++ LYA C  +    K   F + P   R++VSWTT+I  +V+ 
Sbjct: 272 GWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVK--EFLRMP--IRNVVSWTTIISGFVQK 327

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           D    A   F +M +   + +   +  VL+AC++   +   +++H +I    F L  +V 
Sbjct: 328 DDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNV- 386

Query: 261 IHNALIDMYLKCGNIPSARKVFDEM-PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
             +ALI+MY K G +  + +VF EM   KN+  W  MI+     G    A+++F+RM   
Sbjct: 387 -SSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQE 445

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           GL+PD F    VL+    I  L LG+ +H Y+ K  + TD  +G++L  MY+KCG ++++
Sbjct: 446 GLRPDKFCSSSVLSI---IDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEES 502

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
           + VF  M  +D  S+ +MI G + H  A +A+ +F EM    I PD++T    L+ACS  
Sbjct: 503 YTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSAL 562

Query: 440 GLVEEG----------------------------CKHFLDMSRVYNLQPQTEHYGC--MV 469
             +E+G                            C   +   RV+++ PQ + + C  +V
Sbjct: 563 HSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLV 622

Query: 470 DLFGRAGLIREALDL---IKSMPLVPDAFVWGALLGACKI 506
             + + G I +AL L   I+   L  D+F   +++GA  I
Sbjct: 623 SGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAI 662



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 218/485 (44%), Gaps = 28/485 (5%)

Query: 41  KQFHAFIIKTGSPQHQTQILYDKIISLSRGNE-IENLSL----QNPQVYLYNFIIQ-CLS 94
           K  HA  +KT   Q  T +    +    + N  +  L L     +P V  +N +I  C  
Sbjct: 65  KILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQ 124

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N +  ++   + +M   G  PN +T   VL AC    S   G+ V++ ++K    SN YV
Sbjct: 125 NFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYV 184

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRD-----LVSWTTLIQAYVKMDYPTEAILS 209
              ++ L+A         KL  F    +  +D     +V W  +I   VK      A+  
Sbjct: 185 RAGMIDLFA---------KLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDL 235

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F  MC     P+      +L+AC+ L +L  G  +  ++         DVF+  A+ID+Y
Sbjct: 236 FCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVI--KCGAGEDVFVGTAIIDLY 293

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            KC ++  A K F  MP++NVVSW ++I+G   +     A   F+ M+ +G K +++T+ 
Sbjct: 294 AKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTIT 353

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-C 388
            VL +C     ++    +H+++ K     D  + +AL++MY+K G +D +  VFR M+  
Sbjct: 354 SVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMEST 413

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           +++  +  MI   A  G   +A+++F  M Q G+ PD+     VLS      L      +
Sbjct: 414 KNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCY 473

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
            L +    ++   +     +  ++ + G + E+  + + MP   D   W +++     H 
Sbjct: 474 ILKIGLFTDISVGSS----LFTMYSKCGSLEESYTVFEQMP-DKDNVSWASMITGFSEHD 528

Query: 509 KVELA 513
             E A
Sbjct: 529 HAEQA 533



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 184/374 (49%), Gaps = 10/374 (2%)

Query: 132 SLRVGQQVHAYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
           +LR  + +HA+ +KTA+L SN ++ N+LM  Y  C     VH L  F + P    +++SW
Sbjct: 60  TLRNTKILHAHFLKTAILQSNTFMTNSLMGWY--CKSNSMVHALRLFDKTPHP--NVISW 115

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
             LI    +     ++  +F  M  +   P+      VLSAC+ LG    G  ++     
Sbjct: 116 NILISGCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALK 175

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
           N F    + ++   +ID++ K  +   A +VF ++  +NVV WN++I+G     +   AL
Sbjct: 176 NGF--FSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVAL 233

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           D+F +M      P+ FT   +L +CA +  LE G+ V  ++ K     D F+G A++D+Y
Sbjct: 234 DLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLY 293

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           AKC  +DQA   F  M  R+V S+T +I G      +  A   F EM +VG + +  T  
Sbjct: 294 AKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTIT 353

Query: 431 GVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
            VL+AC+   +++E  + H       + L         +++++ + G++  +  + + M 
Sbjct: 354 SVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVS--SALINMYSKIGVVDLSERVFREME 411

Query: 490 LVPDAFVWGALLGA 503
              +  +W  ++ A
Sbjct: 412 STKNLAMWAVMISA 425


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 197/561 (35%), Positives = 317/561 (56%), Gaps = 22/561 (3%)

Query: 63  KIISLSRGNEIENLS------LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLP 115
           +++   R  E +NL+      +    V+ +N +I  L+ + +  EA+  +  M    L P
Sbjct: 15  RLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYP 74

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
              + P  +KAC     +  G+Q H  +      S+++V + L+ +Y+ CG ++   K+F
Sbjct: 75  TRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVF 134

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMIL-----VIVL 229
              + P+  R++VSWT++I+ Y       +A+  F D+    N   D M L     V V+
Sbjct: 135 D--EIPK--RNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVI 190

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG--NIPSARKVFDEMPV 287
           SACS++    L   IH ++    F+    V + N L+D Y K G   +  ARK+FD++  
Sbjct: 191 SACSRVPAKGLTESIHSFVIKRGFDRG--VSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
           K+ VS+NS+++     G   EA ++FRR+ +   +  +  TL  VL + ++ G L +GK 
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           +H  + +  +  D  +G +++DMY KCGR++ A   F  MK ++V S+TAMI G  +HG 
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGH 368

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
           A KAL++F  M   G+ P+ +TFV VL+ACSHAGL  EG + F  M   + ++P  EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG 428

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CMVDL GRAG +++A DLI+ M + PD+ +W +LL AC+IH  VELAEI +  L   +  
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSS 488

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
             G Y+L+++IY+   RWK+  ++R  MK R + K PG SL+E+ GE + F  GD+ HP+
Sbjct: 489 NCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQ 548

Query: 587 TLEIYKLLDEIMHQSKNHGYI 607
             +IY+ L E+  +    GY+
Sbjct: 549 REKIYEFLAELNRKLLEAGYV 569


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 181/507 (35%), Positives = 283/507 (55%), Gaps = 29/507 (5%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L++ M   G+     +L  V  AC + +   V               +V V N ++
Sbjct: 329 EAMQLFQFMTRSGIGFGVVSLSGVFSACAEVKGFDV---------------DVCVRNAIL 373

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY  C  +   + +F   +    QRD VSW T+I A  + +   + I+   +M ++ + 
Sbjct: 374 DLYGKCKALVEAYLVFQEME----QRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGME 429

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            D      VL AC+ L  L  G+ +H     +   L  D F+ + ++DMY KCG I  A 
Sbjct: 430 ADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGL--DAFVSSTVVDMYCKCGMITEAL 487

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           K+ D +  + +VSWNS+IAG +   Q +EA   F  M  +G+KPD FT   VL+SCAN+ 
Sbjct: 488 KLHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLA 547

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            +ELGK +H  + K  +  D FI + LVDMYAKCG +  +  +F  ++  D  S+ AMI 
Sbjct: 548 TIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMIC 607

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G A+HG+ ++AL++F    +  + P+  TFV VL ACSH GL+++GC++F  M+  Y L+
Sbjct: 608 GYALHGQGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMTSRYKLE 667

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           PQ EH+ CM          +EAL  I+SMPL  DA +W  LL  CKI   VE+AE    N
Sbjct: 668 PQLEHFACMGP--------QEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASN 719

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           ++R +P+    YIL++N+Y+   +W +  + R+ M++ ++KK PGCS +EV  E + F  
Sbjct: 720 VLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLV 779

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           G+K HP++ E+Y++L+ ++ + K  GY
Sbjct: 780 GEKVHPRSREVYEMLNNLICEMKLSGY 806



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 189/447 (42%), Gaps = 73/447 (16%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L   T++  Y L A     +L  GQ  HA  + +  +  ++V N L+++YA CG     H
Sbjct: 27  LATATFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAH 86

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMD-----------YPTEAILSF----------- 210
            +F    H    RD VSW T++ AY  M             P   ++S+           
Sbjct: 87  GVFDTMPH----RDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRG 142

Query: 211 ---------FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
                     +M +  + PD   L ++L AC  L DL+LG++IH         L  DV  
Sbjct: 143 MFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKT--GLEMDVRA 200

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            +AL+DMY KC ++  A   F  M  +N VSW ++IAG     Q+   L++  R      
Sbjct: 201 GSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRGLELLCR------ 254

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
                        C  I  L   + +H +  KN  ++D  +G A+VD+YAK   +  A  
Sbjct: 255 -------------CKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARR 301

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
            F  +    V +  AM+VGL   G   +A+ +F  M++ GI    V+  GV SAC+    
Sbjct: 302 AFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEV-- 359

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
                K F     V N          ++DL+G+   + EA  + + M    D+  W  ++
Sbjct: 360 -----KGFDVDVCVRN---------AILDLYGKCKALVEAYLVFQEMEQ-RDSVSWNTII 404

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGD 528
            A + +   E   + +  ++R   E D
Sbjct: 405 AALEQNECYEDTIVHLNEMLRSGMEAD 431



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 207/487 (42%), Gaps = 78/487 (16%)

Query: 78  LQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + +P V  +N ++          + + L  EM   G+ P+  TL  +LKAC     L +G
Sbjct: 123 MPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALG 182

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            Q+HA ++KT L  +V   + L+ +Y  C   +++    HF  H   +R+ VSW  +I  
Sbjct: 183 VQIHALAVKTGLEMDVRAGSALVDMYGKC---RSLEDALHFF-HGMGERNSVSWGAVIAG 238

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            V+     E  +   ++               L  C  +  LS   ++H +   N F  S
Sbjct: 239 CVQ----NEQYMRGLEL---------------LCRCKAITCLSTARQLHAHAIKNKF--S 277

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D  +  A++D+Y K  ++  AR+ F  +P   V + N+M+ GL   G   EA+ +F+ M
Sbjct: 278 SDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFM 337

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
              G+     +L  V ++CA +                  + D  + NA++D+Y KC  +
Sbjct: 338 TRSGIGFGVVSLSGVFSACAEV---------------KGFDVDVCVRNAILDLYGKCKAL 382

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
            +A+ VF+ M+ RD  S+  +I  L  +      +   +EM + G+E D+ T+  VL AC
Sbjct: 383 VEAYLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKAC 442

Query: 437 SHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL----------- 484
           +    +E G   H   +     L         +VD++ + G+I EAL L           
Sbjct: 443 AGLQSLEYGLVVHGKAIKSGLGLDAFVSST--VVDMYCKCGMITEALKLHDRIGGQELVS 500

Query: 485 -----------------------IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
                                  +  M + PD F +  +L +C   A +EL + +   ++
Sbjct: 501 WNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQII 560

Query: 522 RFEPEGD 528
           + E  GD
Sbjct: 561 KQEMLGD 567



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 21/264 (7%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N II   S N    EA   + EML  G+ P+ +T   VL +C    ++ +G+Q+H   +
Sbjct: 501 WNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQII 560

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K  +L + ++ +TL+ +YA CG +     +F   Q    + D VSW  +I  Y       
Sbjct: 561 KQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQ----KLDFVSWNAMICGYALHGQGF 616

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EA+  F    +AN+ P+    V VL ACS +G L  G +    +T + + L P +     
Sbjct: 617 EALEMFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMT-SRYKLEPQL----- 670

Query: 265 LIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
               +  C     A K    MP++ + V W ++++    R   + A      +  L L P
Sbjct: 671 ---EHFACMGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNV--LRLDP 725

Query: 324 DDFTLVCVLNSCANIGWLELGKWV 347
           DD ++  +L++     + E GKWV
Sbjct: 726 DDSSVYILLSNV----YAESGKWV 745


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 306/562 (54%), Gaps = 13/562 (2%)

Query: 40  LKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEI---ENLSLQNPQ--VYLYNFIIQCLS 94
           + Q HA I+ TG   +    +   I S  R N I    N+  + PQ  +  +N +I   S
Sbjct: 1   MTQIHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYS 60

Query: 95  NAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
             N P E + LY  M+ +G+ P++ T    LKAC     L +G+ +   ++      +V+
Sbjct: 61  RTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVF 120

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V ++++ LYA  G +     +F        +RD+VSWTT+I  + +   P +AI  +  M
Sbjct: 121 VVSSVLNLYAKSGKMDKAKIVFD----KMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTM 176

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
            +     DG+++V ++ AC+ LGD   G+ +H ++     N+  D  +  +LIDMY K G
Sbjct: 177 QKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNM--DNVLQTSLIDMYAKNG 234

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
            +  A +VF+ +P K+V+SW ++I+G    G   + L     MQ  G KPD  +L+  L+
Sbjct: 235 KLELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLS 294

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +CA +G L++GK +H ++ K  +  D   G AL+DMYAKCG +  A  +F  ++ RD+  
Sbjct: 295 ACAQVGNLKVGKSLHGHIVK-RLYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLIL 353

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           + AMI    IHG   +AL +F +M +  I PD  TF  +LSACSH+GLVEEG   F  + 
Sbjct: 354 WNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLI 413

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
               +QP  +HY CMVDL  RAG + EA  LI+SM + P   +W ALL  C  H  + + 
Sbjct: 414 DKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIG 473

Query: 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
           E+V + ++   P+  G Y+L++N +S   +W +A   RK MK   ++K PG S VEV G+
Sbjct: 474 EMVAKKILESNPDDLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNGD 533

Query: 574 FYEFRKGDKSHPKTLEIYKLLD 595
              F   DK+H +  +I ++LD
Sbjct: 534 LQAFLMEDKNHNQYQDILQILD 555


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 180/539 (33%), Positives = 294/539 (54%), Gaps = 8/539 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTY 118
           +Y K  SL+   ++ +  ++   +  +N II   +     +    ++  ML     PN  
Sbjct: 54  MYCKCGSLADARKVFD-EMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGS 112

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T    L++      L +G+Q+H++++++ L SN  V   +  +Y  CG ++    +F   
Sbjct: 113 TYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFE-- 170

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
               ++++ V+WT ++  Y + +   +A+  F  M    +  D  +  IVL AC+ L +L
Sbjct: 171 --KMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEEL 228

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
           + G +IH +I      L  +V +   L+D Y+KC N+ SA K F+ +   N VSW+++I 
Sbjct: 229 NFGRQIHGHIV--KLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALIT 286

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G    G+F+EAL  F  ++   +  + FT   +  +C+ +     G   H    K+ +  
Sbjct: 287 GYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVA 346

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
                +A++ MY++CGR+D A  VF S+   D  ++TA+I G A  G A +AL +F  M 
Sbjct: 347 YQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQ 406

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             G+ P+ VTF+ VL+ACSH+GLV EG ++   MS  Y +    +HY CMVD++ RAG +
Sbjct: 407 DCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFL 466

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
           +EAL+LI+SMP  PDA  W  LLG C  +  +E+ E+  ENL + +PE    YILM N+Y
Sbjct: 467 QEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLY 526

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           +S  +WKEA  +RK M ER ++K   CS + V G+ + F  GDK HP+T EIY  L+ +
Sbjct: 527 ASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEAL 585



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 186/389 (47%), Gaps = 10/389 (2%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P +Y    + +AC + +SL  G+  H    +T      ++ N+++++Y  CG +    K+
Sbjct: 10  PRSYKC--LFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKV 67

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F        +R+LVSW T+I AY +     +    F +M +   +P+G   +  L +   
Sbjct: 68  F----DEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLN 123

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
              L +G +IH +   +   L  +  ++ A+ +MY+KCG +  A  VF++M  KN V+W 
Sbjct: 124 PSGLEIGKQIHSHAIRS--GLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWT 181

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
            ++ G T   +  +AL +F +M   G++ D++    VL +CA +  L  G+ +H ++ K 
Sbjct: 182 GIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKL 241

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            + ++  +G  LVD Y KC  ++ A   F  +   +  S++A+I G    G+  +AL  F
Sbjct: 242 GLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTF 301

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
             +    ++ +  T+  +  ACS       G +   D  +  +L         M+ ++ R
Sbjct: 302 ESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKS-SLVAYQHGESAMITMYSR 360

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGA 503
            G +  A  + +S+   PDA  W A++  
Sbjct: 361 CGRLDYATRVFESID-DPDAVAWTAIIAG 388



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 60/120 (50%)

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+  G+     +  C+  +C  I  L  G+  H  + +   N   F+ N+++ MY KCG 
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +  A  VF  M+ R++ S+  +I   A +G   K   +FS M ++  +P+  T++G L +
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRS 120


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/516 (37%), Positives = 290/516 (56%), Gaps = 21/516 (4%)

Query: 104 LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN----------VY 153
           L  +M +  L PN  TL  +L    Q  +L  G  VHAY ++  L SN          V 
Sbjct: 215 LSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVL 274

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           +   L+ +YA CG +    ++F         R+ V+W+ LI  +V     T+A L F  M
Sbjct: 275 LGTALLDMYAKCGSLLYARRVFD----AMPARNEVTWSALIGGFVLCSRMTQAFLLFKAM 330

Query: 214 CQANL---RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
               L    P    +   L AC+ L  L +G ++H  +  +   +  D+   N+L+ MY 
Sbjct: 331 LAQGLCFLSPTS--IASALRACASLDHLRMGEQLHALLAKS--GVHADLTAGNSLLSMYA 386

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           K G I  A  +FDEM VK+ VS++++++G    G+ +EA  +F++MQ   ++PD  T+V 
Sbjct: 387 KAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVS 446

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           ++ +C+++  L+ G+  H  +    + ++  I NAL+DMYAKCGRID +  VF  M  RD
Sbjct: 447 LIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD 506

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           + S+  MI G  IHG   +A  +F EM+ +G  PD VTF+ +LSACSH+GLV EG   F 
Sbjct: 507 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFH 566

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M   Y L P+ EHY CMVDL  R G + EA + I+SMPL  D  VW ALLGAC+++  +
Sbjct: 567 VMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNI 626

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           +L + V   +    PEG G ++L++NIYS+  R+ EA ++R   K +  KK+PGCS +E+
Sbjct: 627 DLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEI 686

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            G  + F  GD+SHP++ EIY+ LD I+   K  GY
Sbjct: 687 NGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGY 722



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 150/487 (30%), Positives = 245/487 (50%), Gaps = 31/487 (6%)

Query: 62  DKIIS--LSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEA---IALYREMLIKGLLPN 116
           D I S  LSR + + +  + +P V  YN +I+  S+++P  A   + LYR ML   + PN
Sbjct: 66  DHIASGHLSRAHHLFD-QIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPN 124

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
            YT P+ LKAC        G+ +H +++   L ++++V   L+ +Y  C  +     +F 
Sbjct: 125 NYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF- 183

Query: 177 FRQHPQAQRDLVSWTTLIQAYVK--MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
                   RDLV+W  ++  Y    M +   A L    M    LRP+   LV +L   ++
Sbjct: 184 ---ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 240

Query: 235 LGDLSLGIKIHRYIT--------DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
            G L+ G  +H Y          ++   L+  V +  AL+DMY KCG++  AR+VFD MP
Sbjct: 241 QGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 300

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRM--QGLG-LKPDDFTLVCVLNSCANIGWLEL 343
            +N V+W+++I G     +  +A  +F+ M  QGL  L P   ++   L +CA++  L +
Sbjct: 301 ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRM 358

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           G+ +H  L K+ ++ D   GN+L+ MYAK G IDQA  +F  M  +D  SY+A++ G   
Sbjct: 359 GEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 418

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVYNLQPQT 462
           +G+A +A  +F +M    +EPD  T V ++ ACSH   ++ G C H   + R   L  +T
Sbjct: 419 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR--GLASET 476

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH--AKVELAEIVMENL 520
                ++D++ + G I  +  +   MP   D   W  ++    IH   K   A  +  N 
Sbjct: 477 SICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 535

Query: 521 VRFEPEG 527
           + F P+G
Sbjct: 536 LGFPPDG 542



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 183/386 (47%), Gaps = 29/386 (7%)

Query: 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA---ILSFFDMCQANLRPDG 222
           G +   H LF     P    D+ ++  LI+AY     PT A   +  +  M +  + P+ 
Sbjct: 71  GHLSRAHHLFDQIPSP----DVRTYNDLIRAYSS-SSPTAAADGLHLYRRMLRHRVAPNN 125

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
                 L ACS L D   G  IHR+    H  L  D+F+  AL+DMY+KC  +P A  +F
Sbjct: 126 YTFPFALKACSALADHHCGRAIHRHAI--HAGLQADLFVSTALLDMYVKCACLPDAAHIF 183

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALD--IFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
             MP +++V+WN+M+AG  H G +  A+   +  +MQ   L+P+  TLV +L   A  G 
Sbjct: 184 ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGA 243

Query: 341 LELGKWVHTYLDKN--HIN-------TDG-FIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           L  G  VH Y  +   H N       TDG  +G AL+DMYAKCG +  A  VF +M  R+
Sbjct: 244 LAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 303

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVG---IEPDEVTFVGVLSACSHAGLVEEGCK 447
             +++A+I G  +  +  +A  +F  M   G   + P  +     L AC+    +  G +
Sbjct: 304 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQ 361

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
               +++   +         ++ ++ +AGLI +A+ L   M  V D   + AL+     +
Sbjct: 362 LHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA-VKDTVSYSALVSGYVQN 419

Query: 508 AKVELAEIVMENLVRFEPEGDGAYIL 533
            + E A +V + +     E D A ++
Sbjct: 420 GRAEEAFLVFKKMQACNVEPDAATMV 445


>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
 gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 185/499 (37%), Positives = 291/499 (58%), Gaps = 36/499 (7%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV---HKLFHFRQHPQAQRDLVSWTTL 193
           +Q+ ++   TA L + Y    ++ L+A      ++    +LF   Q+    +    W T+
Sbjct: 28  KQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQN----KSTFIWNTM 83

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD--- 250
           +QA+V+ +    A   +  M ++N  P+      V+ AC  + +L +G+  H  +     
Sbjct: 84  MQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGW 143

Query: 251 ------------------------NHFNLS--PDVFIHNALIDMYLKCGNIPSARKVFDE 284
                                   N F++S   DV     LI  YL  G +  AR++FD 
Sbjct: 144 ESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDR 203

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           MP KN VSW ++IAG    G FKEAL++F  MQ  G + +  ++V  L +CA +G L+ G
Sbjct: 204 MPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQG 263

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           +W+H Y+ ++H++ D  +G AL+DMYAKCG I+ A  VF  M  RDVY++T +I GLA H
Sbjct: 264 RWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANH 323

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
            K+  A+D+F+ M   G+ P+EVTFV VL+ACS  G+V+EG + F  MS  Y ++PQ +H
Sbjct: 324 DKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQH 383

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           YGC+VDL GRAG I EA  +++ MPL PD++  GALL AC++H  V+L E ++++LV+  
Sbjct: 384 YGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQRC 443

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
            +  G ++L++N+Y+S ++W++A K+RKKM+++ ++K PGCS +EV G   EF  GD+S+
Sbjct: 444 LDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRKLPGCSSIEVNGTVCEFVTGDRSY 503

Query: 585 PKTLEIYKLLDEIMHQSKN 603
               +I  LL  I  Q K+
Sbjct: 504 ALEEDIMFLLFGIDKQLKS 522



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 134/440 (30%), Positives = 217/440 (49%), Gaps = 57/440 (12%)

Query: 9   SGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGS---PQHQTQILYDKII 65
           S SRY   +  + +SLL Q        ++ QLKQ  + +  T +   P    +I+     
Sbjct: 2   SASRYLKASK-KTISLLDQK-----GLTISQLKQIQSHLTVTATLKDPYAAAKIISLHAH 55

Query: 66  SLSRGN----EIENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTL 120
           S +R +    E   L LQN   +++N ++Q     N  + A +LY+ ML    LPN +T 
Sbjct: 56  SNARSSLFYAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTF 115

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH---- 176
            +V++AC    +L++G   H   +K    S  +V N L+ LYA CG +     +F     
Sbjct: 116 SFVIRACIDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIK 175

Query: 177 -------------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
                                    F + P  +++ VSW  LI  YV++ +  EA+  F+
Sbjct: 176 RDVVTWTCLISGYLNSGQVLIARELFDRMP--EKNPVSWGALIAGYVRIGFFKEALEVFY 233

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
           DM  +  R +   +V  L+AC+ LG L  G  IH Y+  +H +L  D  +  ALIDMY K
Sbjct: 234 DMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSL--DRMLGTALIDMYAK 291

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           CG I  A  VFDEM  ++V ++  +I+GL +  + + A+D+F RMQ  G+ P++ T VCV
Sbjct: 292 CGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCV 351

Query: 332 LNSCANIGWLELGKWV-----HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           LN+C+ +G ++ G  +     + Y+ +  I   G     LVD+  + G+I++A  V R M
Sbjct: 352 LNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYG----CLVDLLGRAGKIEEAKQVVREM 407

Query: 387 KCR-DVYSYTAMIVGLAIHG 405
             + D Y+  A++    +HG
Sbjct: 408 PLQPDSYTLGALLDACRVHG 427



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 40/292 (13%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ ++ +M + G   N  ++   L AC    +L  G+ +HAY  +  +  +  +   L+
Sbjct: 227 EALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALI 286

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I+    +F         RD+ ++T LI      D    AI  F  M    + 
Sbjct: 287 DMYAKCGCIEMACSVF----DEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVV 342

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  V VL+ACS++G +  G++I   ++ N + + P +  +  L+D+  + G I  A+
Sbjct: 343 PNEVTFVCVLNACSRMGMVDEGLRIFESMS-NRYVIEPQIQHYGCLVDLLGRAGKIEEAK 401

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +V  EMP                                  L+PD +TL  +L++C   G
Sbjct: 402 QVVREMP----------------------------------LQPDSYTLGALLDACRVHG 427

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
            ++LG+ +   L +  ++  G +   L +MYA   + + A  + + M+ +++
Sbjct: 428 DVQLGEEMVDSLVQRCLDHGG-VHVLLSNMYASADKWEDASKIRKKMEDKNI 478


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 192/571 (33%), Positives = 313/571 (54%), Gaps = 11/571 (1%)

Query: 42  QFHAFIIKTG----SPQHQTQI-LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H   +  G    SP   T + +Y K   L    ++ +   Q+  V     I   + N 
Sbjct: 180 QLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNG 239

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
              EA  L+R M+  G+ P++ T    L    +  SL+  +++H Y ++ A++ +V++ +
Sbjct: 240 LMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKS 299

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+ +Y  C  ++   K         +  D V  TT+I  YV      EA+ +F  + Q 
Sbjct: 300 ALIDIYFKCRDVEMAQK----NLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQE 355

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            ++P  +    +  A + L  L+LG ++H  I      L     + +A++DMY KCG + 
Sbjct: 356 RMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT--KLDEKCHVGSAILDMYAKCGRLD 413

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A +VF+ +  K+ + WNSMI   +  G+  EA+++FR+M   G + D  ++   L++CA
Sbjct: 414 LACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACA 473

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           N+  L  GK +H  + K  + +D +  ++L+DMYAKCG ++ +  VF  M+ ++  S+ +
Sbjct: 474 NLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNS 533

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I     HG   + L +F EM + GI+PD VTF+G++SAC HAG V+EG +++  M+  Y
Sbjct: 534 IISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEY 593

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            +  + EHY C+ D+FGRAG + EA + I SMP  PDA VWG LLGAC IH  VELAE+ 
Sbjct: 594 GIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVA 653

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            ++L   +P   G Y+L+ N+ +   +W++ LK+R  MKER V+K PG S +EV    + 
Sbjct: 654 SKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHM 713

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           F   D SHP T +IY +LD ++ + K  GY+
Sbjct: 714 FVAADGSHPLTAQIYSVLDSLLLELKKEGYV 744



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 201/410 (49%), Gaps = 10/410 (2%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+  Y +ML  G+ P+ YT PYV+KAC   +S+++G+ VH       L  +V+V ++L++
Sbjct: 42  ALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIK 101

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           LYA  G +     LF        Q+D V W  ++  YVK      AI  F +M  + ++P
Sbjct: 102 LYAENGHLSDAQYLF----DNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKP 157

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           + +    VLS C+    L LG ++H         L  D  + N L+ MY KC  + +ARK
Sbjct: 158 NSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLEL--DSPVANTLLAMYSKCQCLQAARK 215

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           +FD +P  ++VSWN +I+G    G   EA  +FR M   G+KPD  T    L     +  
Sbjct: 216 LFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLS 275

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L+  K +H Y+ ++ +  D F+ +AL+D+Y KC  ++ A          D    T MI G
Sbjct: 276 LKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISG 335

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
             ++GK  +AL+ F  + Q  ++P  VTF  +  A   AGL        L  S +     
Sbjct: 336 YVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPA--FAGLAALNLGKELHGSIIKTKLD 393

Query: 461 QTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           +  H G  ++D++ + G +  A  +   +    DA  W +++ +C  + +
Sbjct: 394 EKCHVGSAILDMYAKCGRLDLACRVFNRIT-EKDAICWNSMITSCSQNGR 442



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 139/484 (28%), Positives = 224/484 (46%), Gaps = 53/484 (10%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N +   AI ++ EM    + PN+ T   VL  C     L +G Q+H  ++   L  + 
Sbjct: 135 VKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDS 194

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V NTL+ +Y+ C  ++A  KLF        Q DLVSW  +I  YV+     EA   F  
Sbjct: 195 PVANTLLAMYSKCQCLQAARKLF----DTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRG 250

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M  A ++PD +     L   ++L  L    +IH YI  +   L  DVF+ +ALID+Y KC
Sbjct: 251 MISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVL--DVFLKSALIDIYFKC 308

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
            ++  A+K   +    + V   +MI+G    G+ KEAL+ FR +    +KP   T   + 
Sbjct: 309 RDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIF 368

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            + A +  L LGK +H  + K  ++    +G+A++DMYAKCGR+D A  VF  +  +D  
Sbjct: 369 PAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAI 428

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA----------GLV 442
            + +MI   + +G+  +A+++F +M   G   D V+  G LSAC++           GL+
Sbjct: 429 CWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLM 488

Query: 443 EEG------------------CKHFLDMSRVYN-LQPQTE-HYGCMVDLFGRAGLIREAL 482
            +G                  C +     RV++ +Q + E  +  ++  +G  G ++E L
Sbjct: 489 IKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECL 548

Query: 483 DLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
            L   M    + PD   +  ++ AC    +V+              EG   Y LMT  Y 
Sbjct: 549 ALFHEMLRNGIQPDHVTFLGIISACGHAGQVD--------------EGIRYYHLMTEEYG 594

Query: 540 SKNR 543
              R
Sbjct: 595 IPAR 598



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 175/402 (43%), Gaps = 42/402 (10%)

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y   G +K    LF+  Q         +W  +I+ +  M     A+L +  M  A + P
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTS----AWNWMIRGFTMMGQFNYALLFYLKMLGAGVSP 56

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D      V+ AC  L  + +G  +H   T N   L  DVF+ ++LI +Y + G++  A+ 
Sbjct: 57  DKYTFPYVVKACCGLKSVKMGKIVHE--TVNLMGLKEDVFVGSSLIKLYAENGHLSDAQY 114

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           +FD +P K+ V WN M+ G    G    A+ IF  M+   +KP+  T  CVL+ CA+   
Sbjct: 115 LFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAM 174

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L+LG  +H       +  D  + N L+ MY+KC  +  A  +F ++   D+ S+  +I G
Sbjct: 175 LDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISG 234

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
              +G   +A  +F  M   GI+PD +TF   L  C +  L  + CK             
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITFASFL-PCVNELLSLKHCKEI----------- 282

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
                           +IR A        +V D F+  AL+    I+ K    E+  +NL
Sbjct: 283 -------------HGYIIRHA--------VVLDVFLKSALI---DIYFKCRDVEMAQKNL 318

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
            +           M + Y    + KEAL+  + + + ++K T
Sbjct: 319 CQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 186/570 (32%), Positives = 314/570 (55%), Gaps = 11/570 (1%)

Query: 42  QFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H   +K G     +  +    +Y K   L  G ++  L  ++  V     I  C+ N 
Sbjct: 268 QLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNG 327

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
              +A+ L+ +M   G+ P++ TL  +L A         G+++H Y ++  +  +V++ +
Sbjct: 328 FVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+ +Y  C  ++    ++   +      D+V  +T+I  YV      EA+  F  + + 
Sbjct: 388 ALVDIYFKCRAVRMAQSVYDSSK----AIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQ 443

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            +RP+ + +  VL AC+ +  + LG ++H Y   N +      ++ +AL+DMY KCG + 
Sbjct: 444 GIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYE--GRCYVESALMDMYAKCGRLD 501

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            +  +F ++  K+ V+WNSMI+     G+ +EAL++FR M   G+K  + T+  VL++CA
Sbjct: 502 LSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACA 561

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           ++  +  GK +H  + K  I  D F  +AL+DMY KCG ++ A  VF SM  ++  S+ +
Sbjct: 562 SLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNS 621

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I     +G   +++ +   M + G + D VTF+ ++SAC+HAG V+EG + F  M+  Y
Sbjct: 622 IIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEY 681

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            + P+ EH+ CMVDL+ RAG + +A++LI  MP  PDA +WGALL AC++H  VELAEI 
Sbjct: 682 QIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIA 741

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            + L + +P   G Y+LM+NI +   RW    K+R+ MK+ KV+K PG S V+V    + 
Sbjct: 742 SQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHL 801

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           F   DKSHP + +IY  L  I+ + +  G+
Sbjct: 802 FVAADKSHPDSEDIYMSLKSILLELREEGH 831



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/504 (28%), Positives = 252/504 (50%), Gaps = 46/504 (9%)

Query: 85  LYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           L+N ++     A  +  A+ L+ +M   G  PN  TL   L        L  G Q+H  +
Sbjct: 214 LWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLA 273

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K  L S V V NTL+ +YA C  +    KLF        + DLV+W  +I   V+  + 
Sbjct: 274 VKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGL----MPRDDLVTWNGMISGCVQNGFV 329

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            +A+L F DM ++ +RPD + LV +L A + L   + G ++H YI  N  ++  DVF+ +
Sbjct: 330 DQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHM--DVFLVS 387

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL+D+Y KC  +  A+ V+D     +VV  ++MI+G    G  +EA+ +FR +   G++P
Sbjct: 388 ALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRP 447

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           +   +  VL +CA++  ++LG+ +H+Y  KN      ++ +AL+DMYAKCGR+D +  +F
Sbjct: 448 NAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIF 507

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA---- 439
             +  +D  ++ +MI   A +G+  +AL++F EM   G++   VT   VLSAC+      
Sbjct: 508 SKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIY 567

Query: 440 ------GLVEEG------------------CKHFLDMSRVYNLQPQTEH--YGCMVDLFG 473
                 G+V +G                  C +     RV+   P+     +  ++  +G
Sbjct: 568 YGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYG 627

Query: 474 RAGLIREALDLIKSMP---LVPDAFVWGALLGAC----KIHAKVELAEIVMENLVRFEPE 526
             GL++E++ L++ M       D   + AL+ AC    ++   + L   + E   +  P 
Sbjct: 628 AYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEY-QIAPR 686

Query: 527 GDGAYILMTNIYSSKNRWKEALKL 550
            +  +  M ++YS   +  +A++L
Sbjct: 687 ME-HFACMVDLYSRAGKLDKAMEL 709



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 224/447 (50%), Gaps = 24/447 (5%)

Query: 86  YNFIIQCLSNANPLE-AIALYREMLI--KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           +N++I+ L+ A     A+  Y +M       LP+++T PYV+K+C    ++ +G+ VH  
Sbjct: 112 WNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRT 171

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
           +    L  +++V + L+++YA  GL+    ++F       A+RD V W  ++  YVK   
Sbjct: 172 ARTLGLDGDMFVGSALIKMYANGGLLWDARQVF----DGMAERDCVLWNVMMDGYVKAGS 227

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
            + A+  F DM  +   P+   L   LS  +   DL  G+++H       + L  +V + 
Sbjct: 228 VSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAV--KYGLESEVAVA 285

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           N L+ MY KC  +    K+F  MP  ++V+WN MI+G    G   +AL +F  MQ  G++
Sbjct: 286 NTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIR 345

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD  TLV +L +  ++     GK +H Y+ +N ++ D F+ +ALVD+Y KC  +  A  V
Sbjct: 346 PDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSV 405

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           + S K  DV   + MI G  ++G + +A+ +F  + + GI P+ V    VL AC+    +
Sbjct: 406 YDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAM 465

Query: 443 EEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL---IKSMPLVPDAFVWG 498
           + G + H   +   Y  +   E    ++D++ + G     LDL   I S     D   W 
Sbjct: 466 KLGQELHSYALKNAYEGRCYVE--SALMDMYAKCG----RLDLSHYIFSKISAKDEVTWN 519

Query: 499 ALLGACKIHAKVELA-----EIVMENL 520
           +++ +   + + E A     E+ ME +
Sbjct: 520 SMISSFAQNGEPEEALNLFREMCMEGV 546



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 149/316 (47%), Gaps = 6/316 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT-LMRLYAVCGLIKAVHKLFHFRQHP 181
           VL+ C     L +G QVH  ++   L +      T L+ +Y +    +    +F      
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRG 104

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ--ANLRPDGMILVIVLSACSKLGDLS 239
            A   L  W  LI+          A+L +  M    +   PD      V+ +C+ LG ++
Sbjct: 105 AAACAL-PWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA 163

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           LG  +HR  T     L  D+F+ +ALI MY   G +  AR+VFD M  ++ V WN M+ G
Sbjct: 164 LGRLVHR--TARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDG 221

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G    A+++F  M+  G +P+  TL C L+  A    L  G  +HT   K  + ++
Sbjct: 222 YVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESE 281

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             + N LV MYAKC  +D  + +F  M   D+ ++  MI G   +G   +AL +F +M +
Sbjct: 282 VAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQK 341

Query: 420 VGIEPDEVTFVGVLSA 435
            GI PD VT V +L A
Sbjct: 342 SGIRPDSVTLVSLLPA 357



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 129/292 (44%), Gaps = 13/292 (4%)

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           PD  +L  VL  C     LSLG+++H R +T      + D  +   L+ MY+       A
Sbjct: 38  PDRRLLA-VLRGCVSPSHLSLGLQVHGRAVTAGLH--ATDTALQTRLVGMYVLARRFRDA 94

Query: 279 RKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG--LGLKPDDFTLVCVLN 333
             VF  +P       + WN +I GLT  G ++ AL  + +M        PD  T   V+ 
Sbjct: 95  VAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVK 154

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           SCA +G + LG+ VH       ++ D F+G+AL+ MYA  G +  A  VF  M  RD   
Sbjct: 155 SCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVL 214

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDM 452
           +  M+ G    G    A+++F +M   G EP+  T    LS  +    +  G + H L +
Sbjct: 215 WNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAV 274

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
              Y L+ +      +V ++ +   + +   L   MP   D   W  ++  C
Sbjct: 275 K--YGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPR-DDLVTWNGMISGC 323


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 192/555 (34%), Positives = 310/555 (55%), Gaps = 21/555 (3%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQ 82
           LE  K++ +LKQ H+ +I T   ++   I   ++I     +E+ ++         +    
Sbjct: 12  LEKCKTMKELKQIHSLMITTSVVKNI--IPCSRLIDFCANSELGDIEYARTVFDQINQRT 69

Query: 83  VYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           VY++N +I+   N  +   A+ +Y EM  KG  P+ +T P+VLK C     L  GQ VH 
Sbjct: 70  VYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHN 129

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             +KT    +VY  + L+ +Y  CG + +  K+F F      + ++V+WT+LI  +V  D
Sbjct: 130 RIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEF----IPKWNVVAWTSLIAGFVNND 185

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF-----NLS 256
            P EA+  F DM    + P+ + +   L+A ++  D+  G  +H  +    F     N  
Sbjct: 186 QPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSC 245

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            +V +  A++DMY KCG + +AR +FD+MP +N+V WNSMI+  +  G+  EAL +F  M
Sbjct: 246 FNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDM 305

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +  G  P+  T + V+++C ++G+   G+ +H    +   +    IG AL+DMYAK G  
Sbjct: 306 EMAGFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAGDA 365

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSA 435
           D A  +F  ++ +DV ++T MI GLAI GK  +AL++F  M +   + PD++T++ VL A
Sbjct: 366 DTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWA 425

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           CSH GLVEEG K F  M+ VY ++P  EHYGCM+DL  RAG  +EA +L+  MP  P+A 
Sbjct: 426 CSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEELLMKMPTQPNAT 485

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           +  ++L  C+++  V LA  V  ++V  E    G Y+L++NI++    W+E    R  +K
Sbjct: 486 ILSSILNGCEMYGNVGLANRVKSHIVELENSSSGVYVLLSNIHAKACNWQEMKLARDMLK 545

Query: 556 ERKVKKTPGCSLVEV 570
            + + KT G S VE+
Sbjct: 546 HKNIGKTLGNSFVEI 560


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 182/509 (35%), Positives = 299/509 (58%), Gaps = 8/509 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+  +R+M   G  P+  ++  ++ A  +S +L  G++VHAY+++  L SN+ + NTL+
Sbjct: 332 DALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLV 391

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA C  +K +   F        ++DL+SWTT+I  Y + ++  EAI  F  +    + 
Sbjct: 392 DMYAKCCCVKYMGHAFECMH----EKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMD 447

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            D M++  VL ACS L   +   +IH Y+         D+ + NA++++Y + G+I  AR
Sbjct: 448 VDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL---ADIMLQNAIVNVYGEVGHIDYAR 504

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           + F+ +  K++VSW SMI    H G   EAL++F  ++   ++PD   ++  L++ AN+ 
Sbjct: 505 RAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLS 564

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ GK +H +L +     +G I ++LVDMYA CG ++ +  +F S+K RD+  +T+MI 
Sbjct: 565 SLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMIN 624

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
              +HG   KA+ +F +M+   + PD +TF+ +L ACSH+GL+ EG + F  M   Y L+
Sbjct: 625 ANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLE 684

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  EHY CMVDL  R+  + EA   +++MP+ P + +W ALLGAC IH+  EL E+  + 
Sbjct: 685 PWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKE 744

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L++ + E  G Y L++NI+++  RW +  ++R +MK   +KK PGCS +EV  + + F  
Sbjct: 745 LLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMA 804

Query: 580 GDKSHPKTLEIY-KLLDEIMHQSKNHGYI 607
            DKSHP+T +IY KL        K  GYI
Sbjct: 805 RDKSHPQTDDIYLKLAQFTKLLEKKGGYI 833



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 153/528 (28%), Positives = 260/528 (49%), Gaps = 42/528 (7%)

Query: 4   PLTVASGSRYNDINTFQQLSLLHQSP-----RLE-----------SSKSVGQLKQFHAFI 47
           P++V + ++      FQ L+LL   P     RLE           ++K++ Q +Q HA +
Sbjct: 13  PISVNTLNKGTLKPAFQSLTLLSTHPLATPSRLEHAHSLLLDLCVAAKALPQGQQLHALL 72

Query: 48  IKT---GSPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQC-LSNANPLEAIA 103
           +K+        +  ++Y K  SL    ++ +  +    ++ +N ++   +S+   LEAI 
Sbjct: 73  LKSHLSAFLATKLVLMYGKCGSLRDAVKVFD-EMSERTIFSWNALMGAFVSSGKYLEAIE 131

Query: 104 LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYA 163
           LY++M + G+  +  T P VLKAC      R+G ++H  ++K      V+V N L+ +Y 
Sbjct: 132 LYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYG 191

Query: 164 VCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM 223
            CG +     LF        + D VSW ++I A+V      EA+  F  M +  +  +  
Sbjct: 192 KCGDLGGARVLFDGIM--MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTY 249

Query: 224 ILVIVLSACSKLGDLSLGIKIHRYI-TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
             V  L        + LG+ IH  +   NHF    DV++ NALI MY KCG +  A +VF
Sbjct: 250 TFVAALQGVEDPSFVKLGMGIHGAVLKSNHF---ADVYVANALIAMYAKCGRMEDAGRVF 306

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
           + M  ++ VSWN++++GL     + +AL+ FR MQ  G KPD  +++ ++ +    G L 
Sbjct: 307 ESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLL 366

Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
            GK VH Y  +N ++++  IGN LVDMYAKC  +      F  M  +D+ S+T +I G A
Sbjct: 367 KGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYA 426

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
            +    +A+++F ++   G++ D +    VL ACS  GL     ++F+     Y  +   
Sbjct: 427 QNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GLKS---RNFIREIHGYVFKRDL 481

Query: 463 EHY---GCMVDLFGRAGLI---REALDLIKSMPLVPDAFVWGALLGAC 504
                   +V+++G  G I   R A + I+S  +V     W +++  C
Sbjct: 482 ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVS----WTSMITCC 525



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 128/310 (41%), Gaps = 53/310 (17%)

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           + I  C+ N  P+EA+ L+  +    + P++  +   L A     SL+ G+++H + ++ 
Sbjct: 520 SMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRK 579

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
                  + ++L+ +YA CG ++   K+FH  +    QRDL+ WT++I A        +A
Sbjct: 580 GFFLEGPIASSLVDMYACCGTVENSRKMFHSVK----QRDLILWTSMINANGMHGCGNKA 635

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           I  F  M   N+ PD +  + +L ACS  G +  G +    I    + L P    +  ++
Sbjct: 636 IALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFE-IMKYGYQLEPWPEHYACMV 694

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH------------------------ 302
           D+  +  ++  A      MP+K        + G  H                        
Sbjct: 695 DLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSG 754

Query: 303 -----------RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
                       G++ +  ++  RM+G GLK +               W+E+   +HT++
Sbjct: 755 KYALISNIFAADGRWNDVEEVRLRMKGNGLKKN-----------PGCSWIEVDNKIHTFM 803

Query: 352 --DKNHINTD 359
             DK+H  TD
Sbjct: 804 ARDKSHPQTD 813


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 186/534 (34%), Positives = 301/534 (56%), Gaps = 10/534 (1%)

Query: 78  LQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +  P +  +N +I   ++  + L A++L+ EM   GL+ + +T   V+ AC     L   
Sbjct: 100 IPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLI-- 157

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+H+ +  +   S V V N+L+  Y+  G+++    +F+     +  RD VSW ++I A
Sbjct: 158 RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFN--GMGEEVRDEVSWNSMIVA 215

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y +     +A+  + DM       D   L  VL+  S + DLS G++ H       FN  
Sbjct: 216 YGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFN-- 273

Query: 257 PDVFIHNALIDMYLKCG-NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK-EALDIFR 314
            +  + + LIDMY KCG  +  +RKVF+E+   ++V WN+MI+G +   +   EAL+ FR
Sbjct: 274 KNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFR 333

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF-IGNALVDMYAKC 373
           +MQ  G  PDD + VC +++C+N+     GK  H    K+ I ++   + NALV MY+KC
Sbjct: 334 QMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKC 393

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G +  A  +F+ M   +  +  ++I G A HG   ++L++F +M    I P  +T V +L
Sbjct: 394 GNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSIL 453

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SAC+H G VEEG K+F  M  ++ ++P+ EHY CM+DL GRAG + EA  LI +MP  P 
Sbjct: 454 SACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPG 513

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
           +  W ALLGAC+ +  +ELAE      ++ EP     YI++ ++YS+  +W+EA ++RK 
Sbjct: 514 SAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKL 573

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           M++R ++K PGCS +E+    + F   D SHP+  EI+  LDE+  + K  GY+
Sbjct: 574 MRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYV 627



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 219/500 (43%), Gaps = 73/500 (14%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK+C  ++ L  G+ +H   +K+ + S+ Y+ N  + LY+ C L+   H  F+    P 
Sbjct: 14  ILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPN 73

Query: 183 A---------------------------QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
                                       Q DLVS+ TLI AY        A+  F +M +
Sbjct: 74  VFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMRE 133

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             L  DG     V++AC     + L  ++H     + F+    V + N+L+  Y K G +
Sbjct: 134 MGLVMDGFTFSGVITACCN--HVGLIRQLHSLAFSSGFD--SYVSVKNSLLTYYSKNGIL 189

Query: 276 PSARKVFDEM--PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
             A  VF+ M   V++ VSWNSMI       +  +AL ++R M   G + D FTL  VL 
Sbjct: 190 EEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLT 249

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR-IDQAFGVFRSMKCRDVY 392
           + + +  L  G   H    K   N +  +G+ L+DMYAKCG  + ++  VF  +   D+ 
Sbjct: 250 TFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLV 309

Query: 393 SYTAMIVGLAIHGK-AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------ 445
            +  MI G + + + + +AL+ F +M + G  PD+ +FV  +SACS+     +G      
Sbjct: 310 VWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHAL 369

Query: 446 -----------------------CKHFLDMSRVYNLQPQ--TEHYGCMVDLFGRAGLIRE 480
                                  C +  D  +++   PQ  T     ++  + + G+  E
Sbjct: 370 AMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTE 429

Query: 481 ALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEI---VMENLVRFEPEGDGAYILM 534
           +L+L + M    + P +    ++L AC    +VE  +    +M+++   EPE +  Y  M
Sbjct: 430 SLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAE-HYSCM 488

Query: 535 TNIYSSKNRWKEALKLRKKM 554
            ++     +  EA +L   M
Sbjct: 489 IDLLGRAGKLSEAERLIDTM 508



 Score = 42.0 bits (97), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQI------LYDKIISLSRGNEIENLSLQNPQVYLYNFI 89
           S  Q KQFHA  +K+  P +Q  +      +Y K  +L    ++     Q+  V L + I
Sbjct: 359 SPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSII 418

Query: 90  IQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
                +    E++ L+ +ML   + P + TL  +L AC  +  +  G++
Sbjct: 419 AGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKK 467


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 191/586 (32%), Positives = 319/586 (54%), Gaps = 20/586 (3%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYN 87
           SSK + Q +  HA I++T   +    +    I   +R  ++E        +    +  +N
Sbjct: 70  SSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWN 129

Query: 88  FIIQCLS-NANPLEAIALYREMLIK---GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            +I   S N +   A+ +Y++M+ K   G+ P+  T    L AC     +  G+++ A +
Sbjct: 130 ALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEART 189

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           + +   S+  V N L+ +Y+ CG +++  K+F   ++    RD+++W T+I  Y K    
Sbjct: 190 VASGYASDSIVQNALINMYSKCGSLESARKVFDRLKN----RDVIAWNTMISGYAKQGAA 245

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
           T+A+  F  M   + +P+ +  + +L+AC+ L DL  G  IHR + ++ +    D+ I N
Sbjct: 246 TQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYE--SDLVIGN 303

Query: 264 ALIDMYLKCGN-IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
            L++MY KC + +  AR+VF+ M  ++V++WN +I      GQ K+ALDIF++MQ   + 
Sbjct: 304 VLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVA 363

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P++ TL  VL++CA +G    GK VH  +       D  + N+L++MY +CG +D   GV
Sbjct: 364 PNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGV 423

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F +++ + + S++ +I   A HG +   L+ F E+ Q G+  D+VT V  LSACSH G++
Sbjct: 424 FAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGML 483

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           +EG + FL M   + L P   H+ CMVDL  RAG +  A +LI  MP +PDA  W +LL 
Sbjct: 484 KEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLS 543

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYI-LMTNIYSSKNRWKEALKLRKKMKERKVKK 561
            CK+H   + A  V + L   E E + + + L++N+Y+   RW +   +RK    R  +K
Sbjct: 544 GCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDD---VRKTRNRRAARK 600

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            PGCS +E+    +EF  GDKSHP+   I   +  +  Q K+ GY+
Sbjct: 601 NPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYV 646



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 208/375 (55%), Gaps = 12/375 (3%)

Query: 77  SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           ++++P    +  I+   + N +  EA+  YR M+++GL P+       +  C  S+ L+ 
Sbjct: 17  AIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQ 76

Query: 136 GQQVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
           GQ +HA  ++T LL  ++ +   L+ +YA C  ++   K F        ++ LV+W  LI
Sbjct: 77  GQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTF----DEMGKKTLVTWNALI 132

Query: 195 QAYVKMDYPTEAILSFFDMCQAN---LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
             Y +      A+  + DM   +   ++PD +     L AC+ +GD+S G +I      +
Sbjct: 133 AGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVAS 192

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
            +  + D  + NALI+MY KCG++ SARKVFD +  ++V++WN+MI+G   +G   +AL+
Sbjct: 193 GY--ASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALE 250

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           +F+RM     KP+  T + +L +C N+  LE G+ +H  + ++   +D  IGN L++MY 
Sbjct: 251 LFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYT 310

Query: 372 KC-GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           KC   +++A  VF  M+ RDV ++  +IV    +G+A  ALDIF +M    + P+E+T  
Sbjct: 311 KCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLS 370

Query: 431 GVLSACSHAGLVEEG 445
            VLSAC+  G   +G
Sbjct: 371 NVLSACAVLGAKRQG 385



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 189/383 (49%), Gaps = 42/383 (10%)

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y  CG +     +FH  +HP +    VSWT ++ A+ +  +  EA+  +  M    LRP
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNS----VSWTLIVAAFARNGHYREALGYYRRMVLEGLRP 56

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           DG + V+ +  CS   DL  G  +H  I +    L  D+ +  ALI MY +C ++  ARK
Sbjct: 57  DGAMFVVAIGVCSSSKDLKQGQLLHAMILETRL-LEFDIILGTALITMYARCRDLELARK 115

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM---QGLGLKPDDFTLVCVLNSCAN 337
            FDEM  K +V+WN++IAG +  G  + AL I++ M      G+KPD  T    L +C  
Sbjct: 116 TFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTV 175

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +G +  G+ +      +   +D  + NAL++MY+KCG ++ A  VF  +K RDV ++  M
Sbjct: 176 VGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTM 235

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------------ 445
           I G A  G A +AL++F  M     +P+ VTF+G+L+AC++   +E+G            
Sbjct: 236 ISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGY 295

Query: 446 ----------------CKHFLDMSRVYNLQPQTEH---YGCMVDLFGRAGLIREALDLIK 486
                           C   L+ +R    + +T     +  ++  + + G  ++ALD+ K
Sbjct: 296 ESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFK 355

Query: 487 SMPL---VPDAFVWGALLGACKI 506
            M L    P+      +L AC +
Sbjct: 356 QMQLENVAPNEITLSNVLSACAV 378



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 15/265 (5%)

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY KCG++  A  VF  +   N VSW  ++A     G ++EAL  +RRM   GL+PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 328 LVCVLNSCANIGWLELGKWVHTY-LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
            V  +  C++   L+ G+ +H   L+   +  D  +G AL+ MYA+C  ++ A   F  M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEM---SQVGIEPDEVTFVGVLSACSHAGLVE 443
             + + ++ A+I G + +G    AL I+ +M   S  G++PD +TF   L AC+  G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI---REALDLIKSMPLVPDAFVWGAL 500
           +G +     +        +     +++++ + G +   R+  D +K+     D   W  +
Sbjct: 181 QG-REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR----DVIAWNTM 235

Query: 501 LGACKIHAKVELAEIVMENLVRFEP 525
           +     +AK   A   +E   R  P
Sbjct: 236 ISG---YAKQGAATQALELFQRMGP 257


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 204/591 (34%), Positives = 306/591 (51%), Gaps = 105/591 (17%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQ---HQTQILYDKIISLSRGNEIENLS--------LQ 79
           LE    +  LKQ  AF+I  G  Q   +  ++L    ++LS      NLS        ++
Sbjct: 62  LERCIHLNHLKQLQAFLITLGHAQTHFYAFKLLRFCTLALS------NLSYARFIFDHVE 115

Query: 80  NPQVYLYNFIIQCL-SNANPLEAIALYREMLIKGL-LPNTYTLPYVLKACWQSQSLRVGQ 137
           +P VYLY  +I    S+++   A+ LYR M+ +    PN +  P+VLK+C Q       +
Sbjct: 116 SPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSAR 175

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            VH   +++                              F Q+P  Q      T L+ AY
Sbjct: 176 MVHCQVLRSG-----------------------------FEQYPVVQ------TALLDAY 200

Query: 198 VKMDYPTEAILSFFD-MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           ++     E+    FD M + N                                       
Sbjct: 201 LRFWSDVESARLLFDEMTERN--------------------------------------- 221

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
             V    A+I  Y + G I +A  +F+EMP ++V SWN++IAG T  G F EAL +FRRM
Sbjct: 222 --VVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRM 279

Query: 317 -------QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
                   G G +P+  T VC L++C + G L LGKW+H Y+ +N +  D F+ NALVDM
Sbjct: 280 IAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDM 339

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG--IEPDEV 427
           Y KCG + +A  VF     R + S+ +MI  LA+HG++  A+ +F EM   G  ++PDEV
Sbjct: 340 YGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEV 399

Query: 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           TF+G+L+AC+H GLVE+G  +F  M++ Y ++PQ EHYGC+VDL GRAG   EA+++++ 
Sbjct: 400 TFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRG 459

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
           M + PD  +WG+LL  CKIH   +LAE  ++ L+  +P   G  I++ NIY    +W E 
Sbjct: 460 MRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDEV 519

Query: 548 LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
            K+RK +KE+   KTPGCS +E+  + ++F   DK+HP+T EIY  L+ ++
Sbjct: 520 RKVRKVLKEQNAHKTPGCSWIEIDNQVHQFYSVDKTHPRTEEIYNTLESLI 570


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 178/456 (39%), Positives = 275/456 (60%), Gaps = 42/456 (9%)

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS-KLGDLSLGIKIHRYI 248
           W T+++AY++ +   +A+L +  M + N+ PD     +V+ AC+ +L +   G +IH ++
Sbjct: 97  WNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFG-GKEIHDHV 155

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ--- 305
               F+   DV++ N LI+MY  CGN+  ARK+FDE PV + VSWNS++AG   +G    
Sbjct: 156 LKVGFD--SDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQ 213

Query: 306 -------------------------------FKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
                                          ++EAL +F  M   G++ D+  +V VL++
Sbjct: 214 VMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSA 273

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALV----DMYAKCGRIDQAFGVFRSMKCRD 390
           CA++  ++ GK +H  + +  I +   + NAL+    DMY KCG ++ A  VF  M+ + 
Sbjct: 274 CAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKG 333

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           V S+ A+I+GLA++G   ++LD+FSEM   G+ P+E+TF+GVL AC H GLV+EG  HF 
Sbjct: 334 VSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFA 393

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M   + ++P  +HYGCMVDL GRAGL+ EA  LI+SMP+ PD   WGALLGACK H   
Sbjct: 394 SMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDT 453

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           E+ E V   L+  +P+ DG ++L++NI++SK  W++ L++R  MK++ V KTPGCSL+E 
Sbjct: 454 EMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEA 513

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            G  +EF  GDK+HP   ++  +L+E+  + K  GY
Sbjct: 514 NGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGY 549


>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
 gi|238005588|gb|ACR33829.1| unknown [Zea mays]
 gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
          Length = 569

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 189/489 (38%), Positives = 281/489 (57%), Gaps = 9/489 (1%)

Query: 84  YLYNFIIQCLSNA---NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           Y++N +++  S++   +  + +ALY+ M   G+ P+ YT P VL AC  ++ L +G+ VH
Sbjct: 84  YMWNTLLRAHSHSQLSHAADTLALYKRMRAAGVAPDHYTYPIVLPACAAARELWLGRAVH 143

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              ++ AL  + +V + L+ +Y   G +     +F   +   + R +VSWT+++  YV+ 
Sbjct: 144 GDVVRFALAGDGFVHSALITMYFQEGEVADAELVF--AESHGSSRTVVSWTSMVAGYVQN 201

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
            Y  EA+  F  M    + P+ + L+  L        L  G  +H ++    F+   ++ 
Sbjct: 202 YYFGEAVALFGTMIAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRLGFD--ANIP 259

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           + NALI MY KCG+IP A+ +F+ MP +++ SWN+M+A         EA+  FRRM    
Sbjct: 260 LANALIAMYGKCGSIPMAQTLFEGMPARSLASWNTMVAMYEQHADVVEAIKFFRRMLTEK 319

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQA 379
           +  D  TLV VL++CA  G L+ GKWVH  L +NH ++TD  IGN LVDMYAKCG I  A
Sbjct: 320 VGFDCVTLVSVLSACARSGALQTGKWVHE-LARNHGLDTDARIGNVLVDMYAKCGEIASA 378

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             VF  ++ R V S++AMI   A HG + +AL +FS M   G+ P+  TF  VL AC H+
Sbjct: 379 RNVFDCLRMRSVVSWSAMISAYANHGASEEALKLFSLMKNEGVRPNSFTFTAVLVACGHS 438

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLVEEG KHF  +   Y + P  EHY CMVD+ GRAG + EA ++I+ M L PD  VWGA
Sbjct: 439 GLVEEGLKHFNSILSDYQMSPTLEHYACMVDMLGRAGRLIEAYEIIRGMSLCPDKCVWGA 498

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
            L  CK+H  +ELAE V  +L +        Y+LM+N+Y      K+A ++R  MKE ++
Sbjct: 499 FLAGCKLHGNLELAEFVARDLFQSGSNDVTFYVLMSNMYFEAGMLKDAERMRWAMKEMEL 558

Query: 560 KKTPGCSLV 568
            KT G S +
Sbjct: 559 NKTAGRSAI 567



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 8/243 (3%)

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD---IFRRMQGLGLKPDDFTLV 329
            ++  AR+VFD  PV++   WN+++   +H  Q   A D   +++RM+  G+ PD +T  
Sbjct: 66  ASLAYARRVFDATPVRDAYMWNTLLRAHSH-SQLSHAADTLALYKRMRAAGVAPDHYTYP 124

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--K 387
            VL +CA    L LG+ VH  + +  +  DGF+ +AL+ MY + G +  A  VF      
Sbjct: 125 IVLPACAAARELWLGRAVHGDVVRFALAGDGFVHSALITMYFQEGEVADAELVFAESHGS 184

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            R V S+T+M+ G   +    +A+ +F  M   G+ P+E+T +  L        ++ G  
Sbjct: 185 SRTVVSWTSMVAGYVQNYYFGEAVALFGTMIAEGVLPNEITLISFLPCLQGQEWLDAGEM 244

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
               + R+            ++ ++G+ G I  A  L + MP    A  W  ++   + H
Sbjct: 245 VHGFVIRL-GFDANIPLANALIAMYGKCGSIPMAQTLFEGMPARSLA-SWNTMVAMYEQH 302

Query: 508 AKV 510
           A V
Sbjct: 303 ADV 305


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 159/351 (45%), Positives = 237/351 (67%)

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           PD+    A++    K G++  ARK+FD+M  K+ ++WN+MI+G    GQ +EAL +F  M
Sbjct: 175 PDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLM 234

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           Q  G+K ++ ++V VL++C+++G L+ G+W H Y+++N +     +G AL+DMYAKCG +
Sbjct: 235 QREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNM 294

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           ++A  VF  MK ++VY++++ I GLA++G   K L++FS M Q  ++P+E+TFV VL  C
Sbjct: 295 NKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGC 354

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           S  GLVEEG KHF  MS+VY ++P+ EHYGCMVDL+GRAG + EAL+ I SMP+ P    
Sbjct: 355 SVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGA 414

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           WGALL ACKI+  +E+ E+    +V  E +  GAY+L++NIY+    W     +R+ M  
Sbjct: 415 WGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNV 474

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + V+K PGCS++EV GE +EF  GDKSHP+  EI  +L EI  + K  GY+
Sbjct: 475 KGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYV 525



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 187/397 (47%), Gaps = 41/397 (10%)

Query: 31  LESSKSVGQLKQFHAFIIKTG---SPQHQTQ----ILYDKIISLSRGNEIENLSLQNPQV 83
           +E   ++ +LKQ H  ++  G    PQ   Q    I  +   +L   N++ + S QNP +
Sbjct: 16  VEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNS-QNPTL 74

Query: 84  YLYNFIIQCLS-NANPLEAIALYREMLIKG--LLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           + +N +I+  S ++ P  +   Y  +L     L P+ YT  ++++   Q  +   G  VH
Sbjct: 75  FTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVH 134

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ------------------ 182
             ++K     + +V + L+ +YA  G + A H++F     P                   
Sbjct: 135 GAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVG 194

Query: 183 ---------AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
                    + +D ++W  +I  YV+     EA+  F  M +  ++ + + +V VLSACS
Sbjct: 195 FARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACS 254

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
            LG L  G   H YI  N   ++  + +  ALIDMY KCGN+  A +VF  M  KNV +W
Sbjct: 255 HLGALDQGRWAHAYIERNKLRMT--LTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTW 312

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           +S I GL   G  ++ L++F  M+   ++P++ T V VL  C+ +G +E G+     + K
Sbjct: 313 SSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSK 372

Query: 354 NH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            + I         +VD+Y + G +D+A     SM  R
Sbjct: 373 VYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVR 409



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 37/272 (13%)

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR-MQGLG-LKPDDFTLVCV 331
           N+  + +V D      + ++NSMI   +       +   + R +   G L PD++T   +
Sbjct: 58  NLHYSNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFL 117

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS------ 385
           + + A +     G  VH    K     D  + + L+ MYA+ G +D    VF S      
Sbjct: 118 VRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDL 177

Query: 386 -------------------------MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
                                    M  +D  ++ AMI G    G++ +AL +F+ M + 
Sbjct: 178 VCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQRE 237

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIR 479
           G++ +EV+ V VLSACSH G +++G      + R  N    T   G  ++D++ + G + 
Sbjct: 238 GVKVNEVSMVSVLSACSHLGALDQGRWAHAYIER--NKLRMTLTLGTALIDMYAKCGNMN 295

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           +A+++   M    + + W + +G   ++   E
Sbjct: 296 KAMEVFWGMK-EKNVYTWSSAIGGLAMNGAGE 326


>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like, partial [Cucumis sativus]
          Length = 472

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 183/466 (39%), Positives = 281/466 (60%), Gaps = 15/466 (3%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           N +T  Y LKAC      + G ++HA+ +K+  LS++++ N+L+  Y + G + +   +F
Sbjct: 17  NHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIF 76

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
                P    D+VSWT++I    K+ +  EA+  F  M   N+RP+   LV  LS CS L
Sbjct: 77  DSIPDP----DVVSWTSIISGLSKLGFEKEALSKFLSM---NVRPNSTTLVTALSTCSSL 129

Query: 236 GDLSLGIKIH--RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
             L LG  IH  R  T N  N    V + NAL+D Y++C  + SA  +F++MP ++VVSW
Sbjct: 130 RCLKLGKAIHGLRMRTLNEEN----VILENALLDFYVRCAYLRSAENLFEKMPKRDVVSW 185

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLK-PDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
            +MI G    G  +EA+ +F+ M  +G   P++ TLV VL++C++I  L LG+WVH+Y++
Sbjct: 186 TTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYIN 245

Query: 353 KNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
             H +  DG +GNAL++MY KCG ++ A  +F++ + +D+ S++ +I GLA++G   +A 
Sbjct: 246 SRHDVIIDGNVGNALINMYVKCGNMEMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAF 305

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
            +FS M   GI PD+VTF+G+LSACSH GL+ +G   F  M  VYN+ PQ  HY CMVD+
Sbjct: 306 VLFSLMLVHGISPDDVTFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDM 365

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
           +G+AGL+ EA   IK MP+  +  VWGALL AC++H   +  E V E L+  +    G +
Sbjct: 366 YGKAGLLDEAEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLGSKGVTVGTF 425

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
            L++N Y+  +RW +A  +R  M+ R +KK  G S +E+    Y  
Sbjct: 426 ALLSNTYACCDRWNDANDVRVAMRSRGLKKMAGRSWIEMVDSSYSL 471



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 182/353 (51%), Gaps = 17/353 (4%)

Query: 42  QFHAFIIKTGSPQH---QTQILYDKIIS--LSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           + HA +IK+G       Q  +L+  I+   +S  + I + S+ +P V  +  II  LS  
Sbjct: 39  EIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFD-SIPDPDVVSWTSIISGLSKL 97

Query: 97  N-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
               EA++ +  M ++   PN+ TL   L  C   + L++G+ +H   M+T    NV + 
Sbjct: 98  GFEKEALSKFLSMNVR---PNSTTLVTALSTCSSLRCLKLGKAIHGLRMRTLNEENVILE 154

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+  Y  C  +++   LF        +RD+VSWTT+I  Y +     EA+  F +M  
Sbjct: 155 NALLDFYVRCAYLRSAENLF----EKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVH 210

Query: 216 -ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
                P+   LV VLSACS +  L LG  +H YI   H ++  D  + NALI+MY+KCGN
Sbjct: 211 VGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRH-DVIIDGNVGNALINMYVKCGN 269

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A  +F     K++VSW+++I+GL   G  K+A  +F  M   G+ PDD T + +L++
Sbjct: 270 MEMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGISPDDVTFLGLLSA 329

Query: 335 CANIGWLELGKWVHTYL-DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           C++ G +  G  V   + D  +I+        +VDMY K G +D+A    + M
Sbjct: 330 CSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEAEAFIKEM 382



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
           L +  + FT    L +C  +   + G  +H +L K+   +D FI N+L+  Y   G +  
Sbjct: 12  LPISHNHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSS 71

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  +F S+   DV S+T++I GL+  G   +AL  F  M+   + P+  T V  LS CS 
Sbjct: 72  ASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMN---VRPNSTTLVTALSTCSS 128

Query: 439 AGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
              ++ G   H L M  +       E+   ++D + R   +R A +L + MP   D   W
Sbjct: 129 LRCLKLGKAIHGLRMRTLNEENVILEN--ALLDFYVRCAYLRSAENLFEKMP-KRDVVSW 185

Query: 498 GALLGACKIHAKVELAEIVMENLV 521
             ++G        E A  V +N+V
Sbjct: 186 TTMIGGYAQSGLCEEAVRVFQNMV 209


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 185/518 (35%), Positives = 291/518 (56%), Gaps = 11/518 (2%)

Query: 94  SNANPLEAI-ALYREM--LIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           + ANP+ A  A+ R++  L  G L P        + AC QS++L   ++VHA+   +   
Sbjct: 24  TAANPVPAASAVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFA 83

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
            + ++ N+L+ LY  CG +    K+F        ++D+VSWT+LI  Y + D P EAI  
Sbjct: 84  GDAFLDNSLIHLYCKCGSVLEARKVFD----EMRRKDMVSWTSLIAGYAQNDMPEEAIGL 139

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
              M +   +P+G     +L A     D  +G +IH       ++   DV++ +AL+DMY
Sbjct: 140 LPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWH--EDVYVGSALLDMY 197

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            +CG +  A  VFD++  KN VSWN++I+G   +G  + AL  F  M   G +   FT  
Sbjct: 198 ARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYS 257

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            V +S A +G LE GKWVH ++ K+      F GN L+DMYAK G +  A  VF  +  +
Sbjct: 258 SVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDK 317

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           D+ ++  M+   A +G   +A+  F EM + GI  ++VTF+ +L+ACSH GLV+EG K +
Sbjct: 318 DLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEG-KRY 376

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
            +M + Y+L+P+ +H+  +V L GRAGL+  AL  I  MP+ P A VWGALL AC++H  
Sbjct: 377 FEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKN 436

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
            ++ +   +++   +P+  G  +L+ NIY+S  +W  A ++R+ MK   VKK P CS VE
Sbjct: 437 AKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVE 496

Query: 570 VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +    + F   D +HP+  EIYK+  +I  + +  GY+
Sbjct: 497 MENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYV 534



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 6/286 (2%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           LY K  S+    ++ +   +   V   + I     N  P EAI L   ML     PN +T
Sbjct: 95  LYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFT 154

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
              +LKA        +G+Q+HA ++K     +VYV + L+ +YA CG++     +F    
Sbjct: 155 FASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVF---- 210

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
                ++ VSW  LI  + +      A+++F +M +            V S+ ++LG L 
Sbjct: 211 DKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALE 270

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G  +H ++  +   ++   F  N L+DMY K G++  ARKVFD +  K++V+WN+M+  
Sbjct: 271 QGKWVHAHMIKSRQKMT--AFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTA 328

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
               G  KEA+  F  M+  G+  +  T +C+L +C++ G ++ GK
Sbjct: 329 FAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGK 374


>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic; Flags: Precursor
 gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 544

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 294/515 (57%), Gaps = 44/515 (8%)

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
           L    TL  VL++C   +++     +HA  ++T    + +V   L+R+ +    +   + 
Sbjct: 26  LSRRKTLISVLRSC---KNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYD 82

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
           +F +  +P    ++  +T +I  +V      + +  +  M   ++ PD  ++  VL AC 
Sbjct: 83  VFSYVSNP----NVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC- 137

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP------- 286
              DL +  +IH  +    F  S  V +   ++++Y K G + +A+K+FDEMP       
Sbjct: 138 ---DLKVCREIHAQVLKLGFGSSRSVGL--KMMEIYGKSGELVNAKKMFDEMPDRDHVAA 192

Query: 287 ------------------------VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
                                   +K+ V W +MI GL    +  +AL++FR MQ   + 
Sbjct: 193 TVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVS 252

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            ++FT VCVL++C+++G LELG+WVH++++   +    F+GNAL++MY++CG I++A  V
Sbjct: 253 ANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRV 312

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           FR M+ +DV SY  MI GLA+HG + +A++ F +M   G  P++VT V +L+ACSH GL+
Sbjct: 313 FRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLL 372

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           + G + F  M RV+N++PQ EHYGC+VDL GR G + EA   I+++P+ PD  + G LL 
Sbjct: 373 DIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLS 432

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           ACKIH  +EL E + + L   E    G Y+L++N+Y+S  +WKE+ ++R+ M++  ++K 
Sbjct: 433 ACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKE 492

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           PGCS +EV  + +EF  GD +HP    IY+ L E+
Sbjct: 493 PGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQEL 527



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 139/493 (28%), Positives = 229/493 (46%), Gaps = 79/493 (16%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS-----LQNPQVYL 85
           L S K++  +   HA II+T   Q    ++++ I   S  + ++        + NP VYL
Sbjct: 36  LRSCKNIAHVPSIHAKIIRTFHDQ-DAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYL 94

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           Y  +I   +S+    + ++LY  M+   +LP+ Y +  VLKAC     L+V +++HA  +
Sbjct: 95  YTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVL 150

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF---RQHPQAQ----------------- 184
           K    S+  V   +M +Y   G +    K+F     R H  A                  
Sbjct: 151 KLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALE 210

Query: 185 -------RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
                  +D V WT +I   V+     +A+  F +M   N+  +    V VLSACS LG 
Sbjct: 211 LFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGA 270

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L LG  +H ++ +    LS   F+ NALI+MY +CG+I  AR+VF  M  K+V+S+N+MI
Sbjct: 271 LELGRWVHSFVENQRMELSN--FVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMI 328

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
           +GL   G   EA++ FR M   G +P+  TLV +LN+C++ G L++G  V   + K   N
Sbjct: 329 SGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSM-KRVFN 387

Query: 358 TDGFIGN--ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
            +  I +   +VD+  + GR+++A+                                   
Sbjct: 388 VEPQIEHYGCIVDLLGRVGRLEEAYRF--------------------------------- 414

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
            +  + IEPD +    +LSAC   G +E G K    +    N  P +  Y  + +L+  +
Sbjct: 415 -IENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESEN--PDSGTYVLLSNLYASS 471

Query: 476 GLIREALDLIKSM 488
           G  +E+ ++ +SM
Sbjct: 472 GKWKESTEIRESM 484



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 132/288 (45%), Gaps = 40/288 (13%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ L+REM ++ +  N +T   VL AC    +L +G+ VH++     +  + +V N L+
Sbjct: 238 KALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALI 297

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ CG I    ++F   +     +D++S+ T+I          EAI  F DM     R
Sbjct: 298 NMYSRCGDINEARRVFRVMR----DKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFR 353

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ + LV +L+ACS  G L +G+++   +    FN+ P +  +  ++D+  + G +  A 
Sbjct: 354 PNQVTLVALLNACSHGGLLDIGLEVFNSMK-RVFNVEPQIEHYGCIVDLLGRVGRLEEAY 412

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +  + +P+                                  +PD   L  +L++C   G
Sbjct: 413 RFIENIPI----------------------------------EPDHIMLGTLLSACKIHG 438

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
            +ELG+ +   L ++  N D      L ++YA  G+  ++  +  SM+
Sbjct: 439 NMELGEKIAKRLFESE-NPDSGTYVLLSNLYASSGKWKESTEIRESMR 485


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 163/351 (46%), Positives = 227/351 (64%), Gaps = 1/351 (0%)

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           D    N LI  Y + G +  AR +FDEMP +N VSW++M+ G    G  +EAL IF RMQ
Sbjct: 142 DASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQ 201

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              ++PDD  LV VL +CA  G LE GKWVH YL  + I  + F G ALVDMY+KCG + 
Sbjct: 202 AEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQ 261

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A  VF  M+ ++V ++T MI GLA+HG+  +A+ +F++M   GI PD++ F+GVL AC+
Sbjct: 262 LAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACT 321

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAGLV++G + F  M R Y ++P+ EHYGCMVDL  R G + EA ++I+ MP+ PDA +W
Sbjct: 322 HAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIW 381

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GAL+  C+ H  VE AE V ++ +  EP+  GAY+L++NIY++  R   A ++R  M+E+
Sbjct: 382 GALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREK 441

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK-NHGYI 607
            V KTPGCS VEV G  ++F  GD SHP+  +I     EI  + +   GYI
Sbjct: 442 GVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYI 492



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 179/372 (48%), Gaps = 54/372 (14%)

Query: 77  SLQNPQ-VYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
           S Q P+ V L++ +I+ LS +A P  A+ LY  +L  GLLP  +TLP +LK+   S ++ 
Sbjct: 30  SGQLPRSVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVP 89

Query: 135 ----VGQQVHAYSMK--------------------------------TALLSNVYVFNTL 158
               +   VH +++K                                TA   +   FNTL
Sbjct: 90  GAAVLALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTL 149

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           +  YA  G +     LF         R+ VSW+ ++  YV+     EA+  F  M   ++
Sbjct: 150 ITAYARAGRLADARALFD----EMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDV 205

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           RPD  +LV VL+AC++ G L  G  +H Y+  +   +  ++F   AL+DMY KCG +  A
Sbjct: 206 RPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKI--NLFFGTALVDMYSKCGEVQLA 263

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
             VF+ M  KNV++W +MI GL   G+  EA+ +F +M+  G++PDD   + VL +C + 
Sbjct: 264 MDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHA 323

Query: 339 GWLELGK-----WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVY 392
           G ++ G+      V  Y  K  I   G     +VD+ A+ G + +A  + + M    D  
Sbjct: 324 GLVDKGRELFDSMVRKYGIKPKIEHYG----CMVDLLARNGFLYEAKEMIQKMPMEPDAL 379

Query: 393 SYTAMIVGLAIH 404
            + A++ G   H
Sbjct: 380 IWGALMAGCRFH 391


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 163/436 (37%), Positives = 269/436 (61%), Gaps = 12/436 (2%)

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAI----LSFFD-MCQANLRPDGMILVIVLSACSK 234
            P    D     TLI+A+     P  ++     +FF  M +  + P+      +L AC+ 
Sbjct: 81  RPSVPLDAFLANTLIRAHAT--SPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAA 138

Query: 235 L-GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY--LKCGNIPSARKVFDEMPVKNVV 291
           L G   +G++ H       F  + D ++ N LI MY     G +  AR VFD MP ++ V
Sbjct: 139 LPGSPDVGLQAHAAAL--KFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAV 196

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           +W++MI G    G   +A+D+FR MQ  G++ D+ T++ VL +  ++G LEL +WV  ++
Sbjct: 197 TWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFV 256

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
           ++  I     + NAL+D  AKCG +D A  VF  M+ R V S+T++I  LA+ G+  +A+
Sbjct: 257 EREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAV 316

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
            +F EM   G+ PD+V F+GVL+ACSHAG+V+EGC +F  M   Y ++P+ EHYGCMVD+
Sbjct: 317 RVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDM 376

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
           FGRAG++  A++ +++MP+ P+  +W +L+ AC+ H ++EL E +  +L+   P  +  Y
Sbjct: 377 FGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANY 436

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           I+++N+++   RWKE  ++R++M +R +KK PGCS+VE+ GE +EF  GD+SHP+  +IY
Sbjct: 437 IMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIY 496

Query: 592 KLLDEIMHQSKNHGYI 607
           ++++E+  + +  G+I
Sbjct: 497 RMVEEMARELRRVGHI 512



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 193/397 (48%), Gaps = 32/397 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYL 85
           L +S +   L Q  AF++K+G   H   ++  ++ + S       L     +L  P V L
Sbjct: 29  LAASSTPTSLLQSVAFLLKSG--LHANSLVLTRLFAASASAAPALLDPLVTALLRPSVPL 86

Query: 86  YNFIIQCLSNANP--------LEAIALYREMLIKGLLPNTYTLPYVLKACWQ-SQSLRVG 136
             F+   L  A+         L A A +  ML   ++PN +T P++LKAC     S  VG
Sbjct: 87  DAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVG 146

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAV--CGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
            Q HA ++K    ++ YV NTL+ +Y+    G +     +F       A    V+W+ +I
Sbjct: 147 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESA----VTWSAMI 202

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
             YV+    ++A+  F +M    ++ D + ++ VL+A + LG L L   + R++      
Sbjct: 203 GGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVERE--G 260

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           +   V + NALID   KCG++  A  VF+ M  ++VVSW S+I  L   G+ KEA+ +F 
Sbjct: 261 IGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFE 320

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD--KNHINTDGFIGN--ALVDMY 370
            M+  G+ PDD   + VL +C++ G ++ G     Y D  K     +  I +   +VDM+
Sbjct: 321 EMKVAGVPPDDVAFIGVLTACSHAGMVDEG---CGYFDAMKVEYGIEPKIEHYGCMVDMF 377

Query: 371 AKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGK 406
            + G +++A    R+M  + +   + +++     HG+
Sbjct: 378 GRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGR 414


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 180/455 (39%), Positives = 269/455 (59%), Gaps = 11/455 (2%)

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           ++ N L+ +Y   GL+     +F         R++VSWTT+I AY       +A+     
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFD----KMPDRNVVSWTTMISAYSAAKLNDKALEFLVL 56

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +  +RP+      VL AC  L +L    ++H  I      L  DVF+ +ALID+Y + 
Sbjct: 57  MLREGVRPNMFTYSSVLRACDGLFNLR---QLHCCII--KIGLDSDVFVRSALIDVYSRW 111

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G + +A +VFDEM   ++V W+S+IAG        EAL +F+RM+  G      TL  VL
Sbjct: 112 GELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVL 171

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +C  +  LELG+ VH ++ K   + D  + NAL+DMY KCG ++ A  VF  M  +DV 
Sbjct: 172 RACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVI 229

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S++ MI GLA +G + +AL +F  M  +GI+P+ VT VGVL ACSHAGLVEEG  +F  M
Sbjct: 230 SWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSM 289

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
             ++ + P  EHYGCM+DL GRAG + EA+DLI  M   PDA  W ALL AC++H  V++
Sbjct: 290 KELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDV 349

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           A    + ++R +P+  G Y+L++NIY++  RW +  ++R+ M  R +KK PGCS +EV  
Sbjct: 350 AIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSK 409

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + + F  GD+SHP+  EI   L++++++    GY+
Sbjct: 410 QIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYV 444



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 166/312 (53%), Gaps = 16/312 (5%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N   LE + L   ML +G+ PN +T   VL+AC    +LR   Q+H   +K  L S+V+V
Sbjct: 47  NDKALEFLVL---MLREGVRPNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFV 100

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +Y+  G ++   ++F          DLV W+++I  + +     EA+  F  M 
Sbjct: 101 RSALIDVYSRWGELENALRVF----DEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMK 156

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +A        L  VL AC+ L  L LG ++H ++         D+ ++NAL+DMY KCG+
Sbjct: 157 RAGFLAQQTTLTSVLRACTGLALLELGRQVHVHV----LKYDQDLILNNALLDMYCKCGS 212

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A  VF  M  K+V+SW++MIAGL   G  KEAL +F  M+ LG+KP+  T+V VL +
Sbjct: 213 LEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFA 272

Query: 335 CANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVY 392
           C++ G +E G  + H+  +   I+        ++D+  + GR+ +A  +   M+C  D  
Sbjct: 273 CSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAV 332

Query: 393 SYTAMIVGLAIH 404
           ++ A++    +H
Sbjct: 333 TWRALLNACRVH 344



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 162/365 (44%), Gaps = 50/365 (13%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENL-----SLQN 80
           S  L +   +  L+Q H  IIK G  S       L D     SR  E+EN       +  
Sbjct: 70  SSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALID---VYSRWGELENALRVFDEMVT 126

Query: 81  PQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
             + +++ II   + N++  EA+ L++ M   G L    TL  VL+AC     L +G+QV
Sbjct: 127 GDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQV 186

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H + +K     ++ + N L+ +Y  CG ++  + +F        ++D++SW+T+I    +
Sbjct: 187 HVHVLKYD--QDLILNNALLDMYCKCGSLEDANAVF----VRMVEKDVISWSTMIAGLAQ 240

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
             Y  EA+  F  M    ++P+ + +V VL ACS  G +  G+     + +  F + P  
Sbjct: 241 NGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKE-LFGIDPGR 299

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMI-AGLTHRGQFKEALDIFRRMQ 317
             +  +ID+  + G +  A  + +EM  + + V+W +++ A   HR      + I    Q
Sbjct: 300 EHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHR---NVDVAIHAAKQ 356

Query: 318 GLGLKPDDF-TLVCVLNSCANI------------------------GWLELGKWVHTYL- 351
            L L P D  T V + N  AN                          W+E+ K +H ++ 
Sbjct: 357 ILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFIL 416

Query: 352 -DKNH 355
            D++H
Sbjct: 417 GDRSH 421


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 192/562 (34%), Positives = 312/562 (55%), Gaps = 13/562 (2%)

Query: 42  QFHAFIIKTG---SPQHQTQIL--YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
             H F +KTG   S    + +L  Y KI  + R  ++ +  +       +  +I  L  A
Sbjct: 137 NLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFD-EMPTRNAVTWTAVITGLVRA 195

Query: 97  NPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
              EA +A +  M    +  ++Y     LKA   S +L  G+ +H  ++K     N +V 
Sbjct: 196 GYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVA 255

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N+L  +Y  CG  K  + L  FR+      D+VSWTT++ AY++M      + +F  M  
Sbjct: 256 NSLTTMYNKCG--KLDYGLHTFRK--MRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRA 311

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
           +N+ P+      V+S C+    L  G ++H ++    F     + + N+++ +Y KCG +
Sbjct: 312 SNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGF--VNALSVANSIMTLYSKCGEL 369

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
            S  KVF  M  +++++W+++IA  +  G  +EA +   RM+  G KP++F L  VL+ C
Sbjct: 370 ASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVC 429

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
            ++  LE GK +H ++    +     + +AL+ MYAKCG I +A  +F      D+ S+T
Sbjct: 430 GSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWT 489

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           AMI G A HG + +A+++F  + +VG+ PD VTF+GVL+ACSHAG+V+ G  +F  MS+ 
Sbjct: 490 AMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKD 549

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           Y++ P  EHYGCM+DL  RAG + +A  LI+SMP+  D  VW  LL AC+IH  V+  + 
Sbjct: 550 YHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQR 609

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
               +++ +P   G +I + NI+++K +WKEA  +R  MK + V K PG S V+V    +
Sbjct: 610 AAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVF 669

Query: 576 EFRKGDKSHPKTLEIYKLLDEI 597
            F  GD+SHP+  +IY +L+E+
Sbjct: 670 AFVSGDRSHPQGEDIYNILEEL 691



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 210/451 (46%), Gaps = 25/451 (5%)

Query: 79  QNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQ 137
           Q  +V   N I   +++++  EA+ L+ +M ++  L  + + L   LK C    +   G 
Sbjct: 77  QRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCGLGLNYLYGT 136

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            +H +S+KT L+++V+V + L+ +Y   G I    K+F         R+ V+WT +I   
Sbjct: 137 NLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVF----DEMPTRNAVTWTAVITGL 192

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           V+  Y    +  F  M ++ +  D     I L A +  G L+ G  IH       F+   
Sbjct: 193 VRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFD--E 250

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           + F+ N+L  MY KCG +      F +M   +VVSW +++      G+    L  F+RM+
Sbjct: 251 NSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMR 310

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF-----IGNALVDMYAK 372
              + P+++T   V++ CAN   L+ G+ +H      H+   GF     + N+++ +Y+K
Sbjct: 311 ASNVIPNEYTFSAVISCCANFARLKWGEQLHA-----HVLCVGFVNALSVANSIMTLYSK 365

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           CG +     VF SMK RD+ +++ +I   +  G   +A +  S M   G +P+E     V
Sbjct: 366 CGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASV 425

Query: 433 LSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
           LS C    ++E+G +   H L +     L+  +     ++ ++ + G I EA  +     
Sbjct: 426 LSVCGSMAILEQGKQLHAHVLSV----GLEQTSMVCSALIIMYAKCGSIAEASKIFMD-S 480

Query: 490 LVPDAFVWGALLGACKIHAKVELAEIVMENL 520
              D   W A++     H   + A  + EN+
Sbjct: 481 WKDDIISWTAMISGYAEHGHSQEAIELFENI 511



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 102/196 (52%), Gaps = 3/196 (1%)

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
           HF+   D+   N  + + +K  ++  AR +FD++P ++ VSW ++I+G  +     EAL 
Sbjct: 42  HFSNKVDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALR 101

Query: 312 IFRRMQ-GLGLKPDDFTLVCVLNSCA-NIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           +F +M+    L+ D F L   L +C   + +L  G  +H +  K  +    F+G+AL+DM
Sbjct: 102 LFSKMRLQSELRIDPFLLSLGLKTCGLGLNYL-YGTNLHGFSVKTGLVNSVFVGSALLDM 160

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           Y K G I ++  VF  M  R+  ++TA+I GL   G +   L  FS M +  +E D   +
Sbjct: 161 YMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAY 220

Query: 430 VGVLSACSHAGLVEEG 445
              L A + +G +  G
Sbjct: 221 AIALKASADSGALNHG 236


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 188/516 (36%), Positives = 295/516 (57%), Gaps = 11/516 (2%)

Query: 95  NANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
           N   LE + L++ M+ +  + PN Y    ++ +C  S  +  G Q H Y++K+ L+ + Y
Sbjct: 106 NGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQY 165

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V N L+ +Y+    +K    +++  + P    D+ S+  +I   ++  YP+EA+     M
Sbjct: 166 VKNALICMYSRRSDVKGAMSVWY--EVPGL--DVFSYNIIINGLLENGYPSEALEVLDRM 221

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIH--RYITDNHFNLSPDVFIHNALIDMYLK 271
               +  D +  V     CS L DL LG+++H   + T   +    D F+ +A+IDMY K
Sbjct: 222 VDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEY----DSFVSSAIIDMYGK 277

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           CGNI +ARKVF+ +  KNVVSW +++A  +  G F+EAL+ F  M+  GL P+++T   +
Sbjct: 278 CGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVL 337

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           LNSCA I  L  GK +HT + K+       +GNAL++MY+K G I+ A  VF  M CRD 
Sbjct: 338 LNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDS 397

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            +++AMI GL+ HG   +AL +F EM      P  VTFVGVLSAC+H G V+EG  +   
Sbjct: 398 ITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQ 457

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           + +   ++P  EHY C+V L  +AG + EA + +KS P+  D   W  LL AC +H    
Sbjct: 458 LMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYG 517

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           L + V E +++ +P   G YIL++N+Y+   RW   +K+RK M+ER VKK PG S +E+ 
Sbjct: 518 LGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIR 577

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              + F    K+HP++ +IY+ + E++   +  GY+
Sbjct: 578 NSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYV 613



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 198/403 (49%), Gaps = 13/403 (3%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKT--ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
           +LK    +++L+ G+ +HA+ + T  A   N+   N+L+ LYA C  I     LF   + 
Sbjct: 31  LLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMR- 89

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLS 239
              +R++VSW  L+  Y       E +  F  M   + +RP+  I   ++S+CS  G + 
Sbjct: 90  ---KRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVV 146

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G + H Y   +   L    ++ NALI MY +  ++  A  V+ E+P  +V S+N +I G
Sbjct: 147 EGWQCHGYALKS--GLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIING 204

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           L   G   EAL++  RM    +  D+ T V     C+++  L LG  VH  + +     D
Sbjct: 205 LLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYD 264

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            F+ +A++DMY KCG I  A  VF  ++ ++V S+TA++   + +G   +AL+ F EM  
Sbjct: 265 SFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEV 324

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS-RVYNLQPQTEHYGCMVDLFGRAGLI 478
            G+ P+E TF  +L++C  AG+   G    L    +    +        +++++ ++G I
Sbjct: 325 DGLLPNEYTFAVLLNSC--AGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSI 382

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521
             A  +   M +  D+  W A++     H     A +V + ++
Sbjct: 383 EAAHKVFLEM-ICRDSITWSAMICGLSHHGLGREALVVFQEML 424



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 185/371 (49%), Gaps = 15/371 (4%)

Query: 42  QFHAFIIKTGSPQHQTQILYDKIISLSRGNEIEN-----LSLQNPQVYLYNFIIQ-CLSN 95
           Q H + +K+G   HQ  +    I   SR ++++        +    V+ YN II   L N
Sbjct: 150 QCHGYALKSGLVFHQ-YVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLEN 208

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
             P EA+ +   M+ + ++ +  T       C   + LR+G QVH    +T    + +V 
Sbjct: 209 GYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVS 268

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           + ++ +Y  CG I    K+F+  Q     +++VSWT ++ AY +     EA+  F +M  
Sbjct: 269 SAIIDMYGKCGNILNARKVFNRLQ----TKNVVSWTAILAAYSQNGCFEEALNFFPEMEV 324

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             L P+     ++L++C+ +  L  G  +H  I  + F     + + NALI+MY K G+I
Sbjct: 325 DGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGF--EDHIIVGNALINMYSKSGSI 382

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
            +A KVF EM  ++ ++W++MI GL+H G  +EAL +F+ M      P   T V VL++C
Sbjct: 383 EAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSAC 442

Query: 336 ANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYS 393
           A++G ++ G  +++  + +  I         +V +  K GR+D+A    +S   + DV +
Sbjct: 443 AHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVA 502

Query: 394 YTAMIVGLAIH 404
           +  ++    +H
Sbjct: 503 WRTLLSACHVH 513


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 194/578 (33%), Positives = 313/578 (54%), Gaps = 19/578 (3%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQ---TQILYD-KIISLSRGNEIENLSLQNPQVYLYNFII 90
           KS+   +Q H+ I+  G  Q+    T++++   I      + +   SLQ+  V+L+N +I
Sbjct: 37  KSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96

Query: 91  QCLSNANPL--EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
              +  N L  EA  L+ +M    +LP+ +TL  + K   +  +L  G+ +H  S++   
Sbjct: 97  NGYAK-NRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGF 155

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV---KMDYPTE 205
           +S+  V N++M +Y  CG  +   K+F         R+  SW  LI  Y      ++  E
Sbjct: 156 VSDTVVANSIMSMYCKCGNFEESRKVFD----EMTIRNSGSWNVLIAGYAVSGNCNFREE 211

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACS-KLGDLSLGIKIHRYITDNHF--NLSPDVFIH 262
                  M    +RPD   +  +L  C    G    G ++H YI  N     L  DV + 
Sbjct: 212 TWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLG 271

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GL 321
             LIDMY +   +   R+VFD M  +NV SW +MI G    G   EAL +FR MQ + G+
Sbjct: 272 CCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGI 331

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           +P+  +LV VL +C++   L  G+ +H +  +  +N +  + NAL+DMY+KCG +D A  
Sbjct: 332 EPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARR 391

Query: 382 VFRSMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
           VF     C+D  S+++MI G  +HGK  +A+ ++ +M Q GI PD +T VG+LSACS +G
Sbjct: 392 VFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSG 451

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LV EG   +  +   Y ++P  E + C+VD+ GRAG +  ALD IK+MP+ P   VWGAL
Sbjct: 452 LVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGAL 511

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           +    IH  +E+ E+    L++ EPE    Y+ ++N+Y+S  RW    ++R+ MK+++++
Sbjct: 512 VSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLR 571

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           K PGCS + +  + + F   DK+HP    IY +LD+++
Sbjct: 572 KVPGCSWISINNKTHCFYVADKAHPSATSIYNMLDDLL 609


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 183/501 (36%), Positives = 291/501 (58%), Gaps = 14/501 (2%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC--GLIKA 170
           ++ N   +  +L+ C    S+R   ++HA+ +      N  +   L+   AV   G +  
Sbjct: 19  MMANARAILSLLQGC---NSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAY 75

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE--AILSFFDMCQAN-LRPDGMILVI 227
              +FH   +PQ      +W ++I+ + +   P +  AI+ +  M  A+  RPD      
Sbjct: 76  AQLVFHRIHNPQTP----AWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSF 131

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +L AC +  +     ++H +I    F    DV +   LI  Y   G I +A KVF+EMP 
Sbjct: 132 LLKACEEAKEEGKCREVHGFII--RFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPA 189

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           +++VSWNSMI+     G  +EAL ++ +M+   +  D FTLV +L+SCA++G L +G  +
Sbjct: 190 RDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQM 249

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H +  +  +  + F+GNAL+DMYAKCG +  A  +F SM  RDV+++ +MIVG  +HG+ 
Sbjct: 250 HRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRG 309

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            +A+  F  M   G+ P+ +TF+G+L  CSH GLV+EG ++F  MS  +NL+P  +HYGC
Sbjct: 310 DEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGC 369

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           MVDLFGRAG ++EAL++I+S P   D  +W  LLG+CKIH  VE+ E+ M NLV+    G
Sbjct: 370 MVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLG 429

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
            G  +L++ IY+     +   ++RK ++ R +K TPG S +EV  + + F   DKSHP +
Sbjct: 430 AGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDS 489

Query: 588 LEIYKLLDEIMHQSKNHGYIL 608
            EIY+ L+E++H++   GY +
Sbjct: 490 REIYRKLEEVIHRASLVGYAM 510



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 168/371 (45%), Gaps = 62/371 (16%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS------LQNPQVYL 85
           E +K  G+ ++ H FII+ G  Q    +L   +I    GN +   +      +    +  
Sbjct: 137 EEAKEEGKCREVHGFIIRFGYDQ--DVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVS 194

Query: 86  YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I C        EA+ +Y +M I  +  + +TL  +L +C    +L +G Q+H ++ 
Sbjct: 195 WNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAG 254

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           +  L+ N++V N L+ +YA CG + +   +F    +   +RD+ +W ++I  Y       
Sbjct: 255 ERRLVENIFVGNALIDMYAKCGSLASALSIF----NSMPKRDVFTWNSMIVGYGVHGRGD 310

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EAI  F  M  A +RP+ +  + +L  CS  G +  G++ + ++  + FNL P +  +  
Sbjct: 311 EAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQ-YFHMMSSEFNLKPGIKHYGC 369

Query: 265 LIDMYLKCGNIPSARKV---------------------------FDEMPVKNVVSWNSMI 297
           ++D++ + G +  A +V                             EM ++N+V   S+ 
Sbjct: 370 MVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLG 429

Query: 298 AG--LTHRGQFKEALDI-----FRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           AG  +   G + EA D+      R++ Q  G+K           +     W+E+G  VH 
Sbjct: 430 AGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIK-----------TTPGWSWIEVGDQVHR 478

Query: 350 YL--DKNHINT 358
           ++  DK+H ++
Sbjct: 479 FVVDDKSHPDS 489


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 176/466 (37%), Positives = 282/466 (60%), Gaps = 42/466 (9%)

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD---MCQANLRPDGMILVIVLSAC 232
           HF   P    ++ ++  L++A+ + +      +S+F+   +      PD      VL AC
Sbjct: 83  HFLSFP----NIFAYNALLKAFSQHN-AWHTTISYFNNQLVLPNAPNPDEYTFTSVLKAC 137

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           + L  +  G K+H ++T   +    ++F+ N+L+D+Y K G    A+K+FDEM V++VVS
Sbjct: 138 AGLAQVLEGQKVHCFVTK--YGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVS 195

Query: 293 WNSMIAGLTHRG-------------------------------QFKEALDIFRRMQGLG- 320
           WN++I+G    G                               ++ +A+++FR+MQ  G 
Sbjct: 196 WNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGG 255

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           L P+D TLV VL++CA++G L+LGKW+H ++ +N I    F+GNAL DMYAKCG + +A 
Sbjct: 256 LAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAK 315

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
           GVF  M  RDV S++ +I+GLA++G A +A + F+EM + G+EP++++F+G+L+AC+HAG
Sbjct: 316 GVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAG 375

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LV++G ++F  M +VY + P+ EHYGC+VDL  RAG + +A  LI SMP+ P+  VWGAL
Sbjct: 376 LVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGAL 435

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           LG C+I+   E  E V+  ++  +    G+ + + N+Y+S  R  +A   R +M++ K  
Sbjct: 436 LGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSM 495

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           KTPGCS +E+    YEF  GD SHP++L IY ++ E+  + K  GY
Sbjct: 496 KTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGY 541



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 218/464 (46%), Gaps = 52/464 (11%)

Query: 2   ASPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILY 61
           +SPL V + +  +D N  + + LL    R  +  S+ QL +  A II +  P     I+ 
Sbjct: 5   SSPLLVITLAVLHDYNHRKTIHLL---LRCATQLSMRQLFEIQAQIIASPIPSIDPNIIA 61

Query: 62  DKII--SLSRGNE-----IENLSLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGL 113
            K I  S S GN      I N  L  P ++ YN +++  S  N     I+ +   L+   
Sbjct: 62  VKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPN 121

Query: 114 LPN--TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
            PN   YT   VLKAC     +  GQ+VH +  K    SN++V N+L+ LY   G     
Sbjct: 122 APNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIA 181

Query: 172 HKLF---------------------------HFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
            KLF                                   +++LVSW+T+I  Y + +   
Sbjct: 182 QKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYA 241

Query: 205 EAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
           +AI  F  M  +  L P+ + LV VLSAC+ LG L LG  IHR+I  N   +   +F+ N
Sbjct: 242 DAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVG--LFLGN 299

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL DMY KCG +  A+ VF EM  ++V+SW+ +I GL   G   EA + F  M   GL+P
Sbjct: 300 ALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEP 359

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGV 382
           +D + + +L +C + G ++ G      + + +  T        +VD+ ++ GR+DQA  +
Sbjct: 360 NDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESL 419

Query: 383 FRSMKCR-DVYSYTAMIVGLAIHGKA-------WKALDIFSEMS 418
             SM  + +V  + A++ G  I+  A       W+ L++ S  S
Sbjct: 420 INSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHS 463



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 114/251 (45%), Gaps = 36/251 (14%)

Query: 273 GNIPSARKVFDE-MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL--GLKPDDFTLV 329
           GN+  +  +F+  +   N+ ++N+++   +    +   +  F     L     PD++T  
Sbjct: 72  GNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFT 131

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC---------------- 373
            VL +CA +  +  G+ VH ++ K    ++ F+ N+LVD+Y K                 
Sbjct: 132 SVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVR 191

Query: 374 ---------------GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
                          G +D+A  VF  M  +++ S++ MI G A + K   A+++F +M 
Sbjct: 192 DVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQ 251

Query: 419 -QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
            + G+ P++VT V VLSAC+H G ++ G K      R   ++        + D++ + G 
Sbjct: 252 HEGGLAPNDVTLVSVLSACAHLGALDLG-KWIHRFIRRNKIEVGLFLGNALADMYAKCGC 310

Query: 478 IREALDLIKSM 488
           + EA  +   M
Sbjct: 311 VLEAKGVFHEM 321


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 176/486 (36%), Positives = 282/486 (58%), Gaps = 6/486 (1%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           + + A    ++L   +QVHA +    +L N+ V N L+  Y+    +   + LF      
Sbjct: 64  FYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFD----G 119

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
              RD VSW+ ++  + K+        +F ++ +   RPD   L  V+ AC  L +L +G
Sbjct: 120 MCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG 179

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
             IH  +    F L  D F+  AL+DMY+KC  I  AR +FD+M  +++V+W  MI G  
Sbjct: 180 RLIHHIVYK--FGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYA 237

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
             G+  E+L +F +M+  G+ PD   +V V+ +CA +G +   + +  Y+ +     D  
Sbjct: 238 ECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVI 297

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           +G A++DMYAKCG ++ A  +F  M+ ++V S++AMI     HG+  KALD+F  M   G
Sbjct: 298 LGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSG 357

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           + PD++T   +L ACSHAGLVEEG + F  M   Y+++   +HY C+VDL GRAG + EA
Sbjct: 358 MLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEA 417

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
           L LIKSM +  D  +WGA LGAC+ H  V LAE    +L+  + +  G Y+L++NIY++ 
Sbjct: 418 LKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANA 477

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQS 601
            RW++  K+R  M +R++KKTPG + +EV  + ++F  GD +HP++ EIY++L  + ++ 
Sbjct: 478 GRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKL 537

Query: 602 KNHGYI 607
           +  GY+
Sbjct: 538 ELVGYV 543



 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 173/471 (36%), Positives = 273/471 (57%), Gaps = 6/471 (1%)

Query: 137  QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            +QVH  +    +L N+ V N L+  Y+    +   + LF         RD VSW+ ++  
Sbjct: 755  RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFD----GMCVRDSVSWSVMVGG 810

Query: 197  YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            + K+        +F ++ +   RPD   L  V+ AC  L +L +G  IH  +    F L 
Sbjct: 811  FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYK--FGLD 868

Query: 257  PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
             D F+  AL+DMY KC  I  AR +FD+M  +++V+W  MI G    G   E+L +F +M
Sbjct: 869  LDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKM 928

Query: 317  QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
            +  G+ PD   +V V+ +CA +G +   + +  Y+ +     D  +G A++DM+AKCG +
Sbjct: 929  REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV 988

Query: 377  DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
            + A  +F  M+ ++V S++AMI     HG+  KALD+F  M + GI P+++T V +L AC
Sbjct: 989  ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYAC 1048

Query: 437  SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
            SHAGLVEEG + F  M   Y+++   +HY C+VDL GRAG + EAL LI SM    D  +
Sbjct: 1049 SHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGL 1108

Query: 497  WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
            WGA LGAC+ H  V LAE    +L+  +P+  G YIL++NIY++  RW++  K+R  M +
Sbjct: 1109 WGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQ 1168

Query: 557  RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            R++KK PG + +EV  + ++F  GD +HP++ EIY++L  + ++ +  GY+
Sbjct: 1169 RRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYV 1219



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 163/289 (56%), Gaps = 7/289 (2%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           +     +RE++  G  P+ YTLP+V++AC   ++L++G+ +H    K  L  + +V   L
Sbjct: 142 INCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAAL 201

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y  C  I+    LF   Q    +RDLV+WT +I  Y +     E+++ F  M +  +
Sbjct: 202 VDMYVKCREIEDARFLFDKMQ----ERDLVTWTVMIGGYAECGKANESLVLFEKMREEGV 257

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            PD + +V V+ AC+KLG +     I  YI    F L  DV +  A+IDMY KCG + SA
Sbjct: 258 VPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQL--DVILGTAMIDMYAKCGCVESA 315

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           R++FD M  KNV+SW++MIA   + GQ ++ALD+F  M   G+ PD  TL  +L +C++ 
Sbjct: 316 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHA 375

Query: 339 GWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           G +E G ++  +  +   + TD      +VD+  + GR+D+A  + +SM
Sbjct: 376 GLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSM 424



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 160/289 (55%), Gaps = 7/289 (2%)

Query: 99   LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
            +     +RE++  G  P+ YTLP+V++AC   ++L++G+ +H    K  L  + +V   L
Sbjct: 818  MNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAAL 877

Query: 159  MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
            + +Y  C  I+    LF        +RDLV+WT +I  Y +     E+++ F  M +  +
Sbjct: 878  VDMYGKCREIEDARFLF----DKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGV 933

Query: 219  RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
             PD + +V V+ AC+KLG +     I  YI    F L  DV +  A+IDM+ KCG + SA
Sbjct: 934  VPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL--DVILGTAMIDMHAKCGCVESA 991

Query: 279  RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
            R++FD M  KNV+SW++MIA   + GQ ++ALD+F  M   G+ P+  TLV +L +C++ 
Sbjct: 992  REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHA 1051

Query: 339  GWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
            G +E G ++     +   +  D      +VD+  + GR+D+A  +  SM
Sbjct: 1052 GLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSM 1100


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 312/524 (59%), Gaps = 16/524 (3%)

Query: 85  LYNFIIQCLSNANPLEAIALYREM-LIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           LYNF IQ  +   PL    L+R   L++        +  +L A     S+   +++HA  
Sbjct: 10  LYNFFIQSRTQY-PL---LLHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCREIHARV 65

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
            K+ L  + ++ + L+  Y   G  +   KLF    H    +DLVSW +LI  + +  + 
Sbjct: 66  FKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPH----KDLVSWNSLISGFSRCLHM 121

Query: 204 TEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
           +  + +F+ M  + +++P+ + ++ ++SACS  G L  G  IH +       L  +V + 
Sbjct: 122 S--LTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIKVGGTL--EVKVA 175

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           N+LI+MY K G++ SA ++F+ +P  N VSWNS+IA     G  +E +D F +M+ LG++
Sbjct: 176 NSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIE 235

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            D+ T++ +L +C ++G  +L + +H  +          I  AL+D YAK GR+  ++GV
Sbjct: 236 QDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGV 295

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F  +   D  ++TAM+ G A HG   +A+ +F  M+  G+EPD VTF  +LSACSH+GLV
Sbjct: 296 FTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLV 355

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
            EG  +F  MS VY ++P+ +HY CMVDL GR GL+ +A ++I++MP+ P+A VWGALLG
Sbjct: 356 NEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLG 415

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           AC++H  +EL + V E+L+  EP     YI+++N+YS+   WK+A K+R  +KER +K+T
Sbjct: 416 ACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRT 475

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           PG S +E   + + F  GD+SHP+T +IY  L+E++ + +  GY
Sbjct: 476 PGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGY 519


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 182/508 (35%), Positives = 293/508 (57%), Gaps = 6/508 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +++ L+ EM + G  PN +T   VLKAC   ++  VG+ VH   +KT    ++YV   L+
Sbjct: 125 DSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLL 184

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY   G    V ++F        + D++ W+ +I  Y + +   EA+  F  M +A + 
Sbjct: 185 DLYTKFGDANDVLRVFE----EMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+      VL +C+ + +L LG ++H ++      L  +VF+ NAL+D+Y KCG + ++ 
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVL--KVGLDGNVFVSNALMDVYAKCGRLDNSM 298

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           K+F E+P +N V+WN+MI G    G   +AL +++ M    ++  + T   VL +CA++ 
Sbjct: 299 KLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLA 358

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            +ELG  +H+   K   + D  +GNAL+DMYAKCG I  A  VF  +  RD  S+ AMI 
Sbjct: 359 AMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMIS 418

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G ++HG   +AL  F  M +    P+++TFV +LSACS+AGL++ G  +F  M + Y ++
Sbjct: 419 GYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIE 478

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  EHY CMV L GR+G + +A+ LI+ +PL P+  VW ALLGAC IH  V+L  +  + 
Sbjct: 479 PCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQ 538

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           +++ +P+ +  ++L++NIY+   RW     +RK MK + VKK PG S +E  G  + F  
Sbjct: 539 ILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSV 598

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GD SHP    I  +L+ +  +++  GY+
Sbjct: 599 GDTSHPDMKMISGMLEWLNMKTEKAGYV 626



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/412 (29%), Positives = 209/412 (50%), Gaps = 10/412 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E + L+  +  +G   N +    +LK     +   +   +HA   K    SN +V   L+
Sbjct: 24  EVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALI 83

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
             YAVCG + +  + F       A +D+VSWT ++  Y + D   +++  F +M      
Sbjct: 84  DAYAVCGSVNSARQAFD----AIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFN 139

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+      VL AC  L   S+G  +H  +    + +  D+++   L+D+Y K G+     
Sbjct: 140 PNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEM--DLYVGVGLLDLYTKFGDANDVL 197

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +VF+EMP  +V+ W+ MI+      Q +EA+++F +M+   + P+ FT   VL SCA+I 
Sbjct: 198 RVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIE 257

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+LGK VH ++ K  ++ + F+ NAL+D+YAKCGR+D +  +F  +  R+  ++  MIV
Sbjct: 258 NLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIV 317

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNL 458
           G    G   KAL ++  M +  ++  EVT+  VL AC+    +E G + H L +  +Y+ 
Sbjct: 318 GYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDK 377

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
                +   ++D++ + G I+ A  L+  M    D   W A++    +H  V
Sbjct: 378 DVVVGN--ALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMISGYSMHGLV 426



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 147/305 (48%), Gaps = 3/305 (0%)

Query: 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI 244
           R+ VS+ TLIQ YV+     E +  F  + +     +  +   +L     +    L   +
Sbjct: 4   RNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSL 63

Query: 245 HRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
           H  I         + F+  ALID Y  CG++ SAR+ FD +  K++VSW  M+A      
Sbjct: 64  HACIY--KLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEND 121

Query: 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
           +F+++L +F  M+ +G  P+ FT   VL +C  +    +GK VH  + K     D ++G 
Sbjct: 122 RFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGV 181

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
            L+D+Y K G  +    VF  M   DV  ++ MI   A   ++ +A+++F +M +  + P
Sbjct: 182 GLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLP 241

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           ++ TF  VL +C+    ++ G +    + +V  L         ++D++ + G +  ++ L
Sbjct: 242 NQFTFASVLQSCASIENLQLGKQVHCHVLKV-GLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 485 IKSMP 489
              +P
Sbjct: 301 FMELP 305



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 146/310 (47%), Gaps = 40/310 (12%)

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           MP +N VS+ ++I G     Q  E +D+F R+   G + + F    +L    ++   EL 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
             +H  + K    ++ F+G AL+D YA CG ++ A   F ++ C+D+ S+T M+   A +
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC----------SHAGLVEEGCKHF----- 449
            +   +L +F+EM  VG  P+  TF GVL AC          S  G V + C        
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 450 -------------LDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMP---LV 491
                         D+ RV+   P+ +   +  M+  + ++   REA++L   M    ++
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN----IYSSKNRWKEA 547
           P+ F + ++L +C     ++L + V  ++++   +G+   + ++N    +Y+   R   +
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGN---VFVSNALMDVYAKCGRLDNS 297

Query: 548 LKLRKKMKER 557
           +KL  ++  R
Sbjct: 298 MKLFMELPNR 307


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 198/606 (32%), Positives = 321/606 (52%), Gaps = 17/606 (2%)

Query: 8   ASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGS-PQ----HQTQILYD 62
            SG + +D  T     + H       +K + + KQ HA +I+ G  P     +    LY 
Sbjct: 67  GSGHKLSDTKT-----VAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYS 121

Query: 63  KIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPY 122
           K   L    ++ +   Q   V   + I     N+   EA++ + +M I+G +   + L  
Sbjct: 122 KCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSS 181

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           VL+AC    +++ G QVH   +K      ++V + L  +Y+ CG +    K F       
Sbjct: 182 VLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFE----EM 237

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
             +D V WT++I  +VK     +A+ ++  M   ++  D  +L   LSACS L   S G 
Sbjct: 238 PCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGK 297

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD-EMPVKNVVSWNSMIAGLT 301
            +H  I    F    + FI NAL DMY K G++ SA  VF       ++VS  ++I G  
Sbjct: 298 SLHATILKLGFEY--ETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYV 355

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
              Q ++AL  F  ++  G++P++FT   ++ +CAN   LE G  +H  + K +   D F
Sbjct: 356 EMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPF 415

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           + + LVDMY KCG  D +  +F  ++  D  ++  ++   + HG    A++ F+ M   G
Sbjct: 416 VSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRG 475

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           ++P+ VTFV +L  CSHAG+VE+G  +F  M ++Y + P+ EHY C++DL GRAG ++EA
Sbjct: 476 LKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEA 535

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
            D I +MP  P+ F W + LGACKIH  +E A+   + L++ EPE  GA++L++NIY+ +
Sbjct: 536 EDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKE 595

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQS 601
            +W++   LRK +K+  + K PG S V++  + + F   D SHP+  EIY+ LD ++ Q 
Sbjct: 596 KQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQI 655

Query: 602 KNHGYI 607
           K  GY+
Sbjct: 656 KRIGYV 661


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 193/516 (37%), Positives = 289/516 (56%), Gaps = 21/516 (4%)

Query: 104 LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN----------VY 153
           L  +M +  L PN  TL  +L    Q  +L  G  VHAY ++  L  N          V 
Sbjct: 100 LSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVL 159

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           +   L+ +YA CG +    ++F         R+ V+W+ LI  +V     T+A L F  M
Sbjct: 160 LGTALLDMYAKCGSLLYARRVFD----AMPARNEVTWSALIGGFVLCSRMTQAFLLFKAM 215

Query: 214 CQANL---RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
               L    P    +   L AC+ L  L +G ++H  +  +   +  D+   N+L+ MY 
Sbjct: 216 LAQGLCFLSPTS--IASALRACASLDHLRMGEQLHALLAKS--GVHADLTAGNSLLSMYA 271

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           K G I  A  +FDEM VK+ VS++++++G    G+ +EA  +F++MQ   ++PD  T+V 
Sbjct: 272 KAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVS 331

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           ++ +C+++  L+ G+  H  +    + ++  I NAL+DMYAKCGRID +  VF  M  RD
Sbjct: 332 LIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD 391

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           + S+  MI G  IHG   +A  +F EM+ +G  PD VTF+ +LSACSH+GLV EG   F 
Sbjct: 392 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFH 451

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M   Y L P+ EHY CMVDL  R G + EA + I+SMPL  D  VW ALLGAC+++  +
Sbjct: 452 VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNI 511

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           +L + V   +    PEG G ++L++NIYS+  R+ EA ++R   K +  KK+PGCS +E+
Sbjct: 512 DLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEI 571

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            G  + F  GD+SHP++ EIY+ LD I+   K  GY
Sbjct: 572 NGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGY 607



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 217/436 (49%), Gaps = 25/436 (5%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           ML   + PN YT P+ LKAC        G+ +H +++   L ++++V   L+ +Y  C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK--MDYPTEAILSFFDMCQANLRPDGMIL 225
           +     +F         RDLV+W  ++  Y    M +   A L    M    LRP+   L
Sbjct: 61  LPDAAHIF----ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTL 116

Query: 226 VIVLSACSKLGDLSLGIKIHRYIT--------DNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           V +L   ++ G L+ G  +H Y          ++   L+  V +  AL+DMY KCG++  
Sbjct: 117 VALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLY 176

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM--QGLG-LKPDDFTLVCVLNS 334
           AR+VFD MP +N V+W+++I G     +  +A  +F+ M  QGL  L P   ++   L +
Sbjct: 177 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRA 234

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA++  L +G+ +H  L K+ ++ D   GN+L+ MYAK G IDQA  +F  M  +D  SY
Sbjct: 235 CASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSY 294

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMS 453
           +A++ G   +G+A +A  +F +M    +EPD  T V ++ ACSH   ++ G C H   + 
Sbjct: 295 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 354

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH--AKVE 511
           R   L  +T     ++D++ + G I  +  +   MP   D   W  ++    IH   K  
Sbjct: 355 R--GLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIHGLGKEA 411

Query: 512 LAEIVMENLVRFEPEG 527
            A  +  N + F P+G
Sbjct: 412 TALFLEMNNLGFPPDG 427



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 163/336 (48%), Gaps = 21/336 (6%)

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +  + P+       L ACS L D   G  IHR+    H  L  D+F+  AL+DMY+KC
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAI--HAGLQADLFVSTALLDMYVKC 58

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD--IFRRMQGLGLKPDDFTLVC 330
             +P A  +F  MP +++V+WN+M+AG  H G +  A+   +  +MQ   L+P+  TLV 
Sbjct: 59  ACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVA 118

Query: 331 VLNSCANIGWLELGKWVHTYLDKN--HIN-------TDG-FIGNALVDMYAKCGRIDQAF 380
           +L   A  G L  G  VH Y  +   H N       TDG  +G AL+DMYAKCG +  A 
Sbjct: 119 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 178

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG---IEPDEVTFVGVLSACS 437
            VF +M  R+  +++A+I G  +  +  +A  +F  M   G   + P  +     L AC+
Sbjct: 179 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACA 236

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
               +  G +    +++   +         ++ ++ +AGLI +A+ L   M  V D   +
Sbjct: 237 SLDHLRMGEQLHALLAK-SGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA-VKDTVSY 294

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
            AL+     + + E A +V + +     E D A ++
Sbjct: 295 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 330



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 6/229 (2%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N    EA  ++++M    + P+  T+  ++ AC    +L+ G+  H   +   L S  
Sbjct: 302 VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASET 361

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            + N L+ +YA CG I    ++F+        RD+VSW T+I  Y       EA   F +
Sbjct: 362 SICNALIDMYAKCGRIDLSRQVFNM----MPSRDIVSWNTMIAGYGIHGLGKEATALFLE 417

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M      PDG+  + +LSACS  G L +  K   ++  + + L+P +  +  ++D+  + 
Sbjct: 418 MNNLGFPPDGVTFICLLSACSHSG-LVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRG 476

Query: 273 GNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           G +  A +    MP++ +V  W +++              + R +Q LG
Sbjct: 477 GFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 525


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 183/501 (36%), Positives = 291/501 (58%), Gaps = 14/501 (2%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC--GLIKA 170
           ++ N   +  +L+ C    S+R   ++HA+ +      N  +   L+   AV   G +  
Sbjct: 1   MMANARAILSLLQGC---NSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAY 57

Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE--AILSFFDMCQAN-LRPDGMILVI 227
              +FH   +PQ      +W ++I+ + +   P +  AI+ +  M  A+  RPD      
Sbjct: 58  AQLVFHRIHNPQTP----AWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSF 113

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           +L AC +  +     ++H +I    F    DV +   LI  Y   G I +A KVF+EMP 
Sbjct: 114 LLKACEEAKEEGKCREVHGFII--RFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPA 171

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           +++VSWNSMI+     G  +EAL ++ +M+   +  D FTLV +L+SCA++G L +G  +
Sbjct: 172 RDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQM 231

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H +  +  +  + F+GNAL+DMYAKCG +  A  +F SM  RDV+++ +MIVG  +HG+ 
Sbjct: 232 HRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRG 291

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467
            +A+  F  M   G+ P+ +TF+G+L  CSH GLV+EG ++F  MS  +NL+P  +HYGC
Sbjct: 292 DEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGC 351

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           MVDLFGRAG ++EAL++I+S P   D  +W  LLG+CKIH  VE+ E+ M NLV+    G
Sbjct: 352 MVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLG 411

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
            G  +L++ IY+     +   ++RK ++ R +K TPG S +EV  + + F   DKSHP +
Sbjct: 412 AGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDS 471

Query: 588 LEIYKLLDEIMHQSKNHGYIL 608
            EIY+ L+E++H++   GY +
Sbjct: 472 REIYRKLEEVIHRASLVGYAM 492



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 166/365 (45%), Gaps = 50/365 (13%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS------LQNPQVYL 85
           E +K  G+ ++ H FII+ G  Q    +L   +I    GN +   +      +    +  
Sbjct: 119 EEAKEEGKCREVHGFIIRFGYDQ--DVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVS 176

Query: 86  YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I C        EA+ +Y +M I  +  + +TL  +L +C    +L +G Q+H ++ 
Sbjct: 177 WNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAG 236

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           +  L+ N++V N L+ +YA CG + +   +F    +   +RD+ +W ++I  Y       
Sbjct: 237 ERRLVENIFVGNALIDMYAKCGSLASALSIF----NSMPKRDVFTWNSMIVGYGVHGRGD 292

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EAI  F  M  A +RP+ +  + +L  CS  G +  G++ + ++  + FNL P +  +  
Sbjct: 293 EAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQ-YFHMMSSEFNLKPGIKHYGC 351

Query: 265 LIDMYLKCGNIPSARKV---------------------------FDEMPVKNVVSWNSMI 297
           ++D++ + G +  A +V                             EM ++N+V   S+ 
Sbjct: 352 MVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLG 411

Query: 298 AG--LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL--DK 353
           AG  +   G + EA D    +QG+  +         + +     W+E+G  VH ++  DK
Sbjct: 412 AGDCVLLSGIYAEAKD----LQGVA-RMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDK 466

Query: 354 NHINT 358
           +H ++
Sbjct: 467 SHPDS 471


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 193/516 (37%), Positives = 289/516 (56%), Gaps = 21/516 (4%)

Query: 104 LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN----------VY 153
           L  +M +  L PN  TL  +L    Q  +L  G  VHAY ++  L  N          V 
Sbjct: 215 LSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVL 274

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           +   L+ +YA CG +    ++F         R+ V+W+ LI  +V     T+A L F  M
Sbjct: 275 LGTALLDMYAKCGSLLYARRVFD----AMPARNEVTWSALIGGFVLCSRMTQAFLLFKAM 330

Query: 214 CQANL---RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
               L    P    +   L AC+ L  L +G ++H  +  +   +  D+   N+L+ MY 
Sbjct: 331 LAQGLCFLSPTS--IASALRACASLDHLRMGEQLHALLAKS--GVHADLTAGNSLLSMYA 386

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           K G I  A  +FDEM VK+ VS++++++G    G+ +EA  +F++MQ   ++PD  T+V 
Sbjct: 387 KAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVS 446

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           ++ +C+++  L+ G+  H  +    + ++  I NAL+DMYAKCGRID +  VF  M  RD
Sbjct: 447 LIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD 506

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           + S+  MI G  IHG   +A  +F EM+ +G  PD VTF+ +LSACSH+GLV EG   F 
Sbjct: 507 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFH 566

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M   Y L P+ EHY CMVDL  R G + EA + I+SMPL  D  VW ALLGAC+++  +
Sbjct: 567 VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNI 626

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           +L + V   +    PEG G ++L++NIYS+  R+ EA ++R   K +  KK+PGCS +E+
Sbjct: 627 DLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEI 686

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            G  + F  GD+SHP++ EIY+ LD I+   K  GY
Sbjct: 687 NGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGY 722



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 150/487 (30%), Positives = 245/487 (50%), Gaps = 31/487 (6%)

Query: 62  DKIIS--LSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEA---IALYREMLIKGLLPN 116
           D I S  LSR + + +  + +P V  YN +I+  S+++P  A   + LYR ML   + PN
Sbjct: 66  DHIASGHLSRAHHLFD-QIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPN 124

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
            YT P+ LKAC        G+ +H +++   L ++++V   L+ +Y  C  +     +F 
Sbjct: 125 NYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF- 183

Query: 177 FRQHPQAQRDLVSWTTLIQAYVK--MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
                   RDLV+W  ++  Y    M +   A L    M    LRP+   LV +L   ++
Sbjct: 184 ---ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 240

Query: 235 LGDLSLGIKIHRYIT--------DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
            G L+ G  +H Y          ++   L+  V +  AL+DMY KCG++  AR+VFD MP
Sbjct: 241 QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 300

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRM--QGLG-LKPDDFTLVCVLNSCANIGWLEL 343
            +N V+W+++I G     +  +A  +F+ M  QGL  L P   ++   L +CA++  L +
Sbjct: 301 ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRM 358

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           G+ +H  L K+ ++ D   GN+L+ MYAK G IDQA  +F  M  +D  SY+A++ G   
Sbjct: 359 GEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 418

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVYNLQPQT 462
           +G+A +A  +F +M    +EPD  T V ++ ACSH   ++ G C H   + R   L  +T
Sbjct: 419 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR--GLASET 476

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH--AKVELAEIVMENL 520
                ++D++ + G I  +  +   MP   D   W  ++    IH   K   A  +  N 
Sbjct: 477 SICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 535

Query: 521 VRFEPEG 527
           + F P+G
Sbjct: 536 LGFPPDG 542



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 183/386 (47%), Gaps = 29/386 (7%)

Query: 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA---ILSFFDMCQANLRPDG 222
           G +   H LF     P    D+ ++  LI+AY     PT A   +  +  M +  + P+ 
Sbjct: 71  GHLSRAHHLFDQIPSP----DVRTYNDLIRAYSS-SSPTAAADGLHLYRRMLRHRVAPNN 125

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
                 L ACS L D   G  IHR+    H  L  D+F+  AL+DMY+KC  +P A  +F
Sbjct: 126 YTFPFALKACSALADHHCGRAIHRHAI--HAGLQADLFVSTALLDMYVKCACLPDAAHIF 183

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALD--IFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
             MP +++V+WN+M+AG  H G +  A+   +  +MQ   L+P+  TLV +L   A  G 
Sbjct: 184 ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGA 243

Query: 341 LELGKWVHTYLDKN--HIN-------TDG-FIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           L  G  VH Y  +   H N       TDG  +G AL+DMYAKCG +  A  VF +M  R+
Sbjct: 244 LAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 303

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVG---IEPDEVTFVGVLSACSHAGLVEEGCK 447
             +++A+I G  +  +  +A  +F  M   G   + P  +     L AC+    +  G +
Sbjct: 304 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQ 361

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
               +++   +         ++ ++ +AGLI +A+ L   M  V D   + AL+     +
Sbjct: 362 LHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA-VKDTVSYSALVSGYVQN 419

Query: 508 AKVELAEIVMENLVRFEPEGDGAYIL 533
            + E A +V + +     E D A ++
Sbjct: 420 GRAEEAFLVFKKMQACNVEPDAATMV 445


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 195/574 (33%), Positives = 319/574 (55%), Gaps = 14/574 (2%)

Query: 41  KQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS-----LQNPQVYLYNFIIQC-LS 94
           K+ HA ++K+ +   +  +    I   +R  ++         + N  V  +N +I+  + 
Sbjct: 267 KEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQ 326

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    EA+  + +M+  G   +  ++  ++ A  +  +L  G ++HAY +K    SN+ V
Sbjct: 327 NLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQV 386

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            NTL+ +Y+ C L   + + F  R H    +DL+SWTT+I  Y + D   EA+  F D+ 
Sbjct: 387 GNTLIDMYSKCNLTCYMGRAF-LRMH---DKDLISWTTVIAGYAQNDCHVEALELFRDVA 442

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  +  D MIL  +L A S L  + +  +IH +I         D  I N L+D+Y KC N
Sbjct: 443 KKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL---LDTVIQNELVDVYGKCRN 499

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A +VF+ +  K+VVSW SMI+     G   EA+++FRRM   GL  D   L+C+L++
Sbjct: 500 MGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSA 559

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
            A++  L  G+ +H YL +     +G I  A+VDMYA CG +  A  VF  ++ + +  Y
Sbjct: 560 AASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQY 619

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           T+MI    +HG    A+++F +M    + PD ++F+ +L ACSHAGL++EG      M  
Sbjct: 620 TSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEH 679

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y L+P  EHY C+VD+ GRA  + EA + +K M   P A VW ALL AC+ H++ E+ E
Sbjct: 680 EYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGE 739

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
           I  + L+  EP+  G  +L++N+++ + RW +  K+R KMK   ++K PGCS +E+ G+ 
Sbjct: 740 IAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKV 799

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQ-SKNHGYI 607
           ++F   DKSHP++ EIY+ L E+  +  +  GY+
Sbjct: 800 HKFTARDKSHPESKEIYEKLSEVTRKLEREVGYV 833



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 187/361 (51%), Gaps = 5/361 (1%)

Query: 78  LQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + +   + +N +I   +SN  P  A+ALY  M ++G+     + P +LKAC + + +R G
Sbjct: 105 MPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSG 164

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            ++H+  +K    S  ++ N L+ +YA    + A  +LF      Q + D V W +++ +
Sbjct: 165 SELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLF---DGFQEKGDAVLWNSILSS 221

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y       E +  F +M      P+   +V  L+AC       LG +IH  +  +  + S
Sbjct: 222 YSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTH-S 280

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            ++++ NALI MY +CG +P A ++  +M   +VV+WNS+I G      +KEAL+ F  M
Sbjct: 281 SELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDM 340

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
              G K D+ ++  ++ +   +  L  G  +H Y+ K+  +++  +GN L+DMY+KC   
Sbjct: 341 IAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLT 400

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
                 F  M  +D+ S+T +I G A +    +AL++F ++++  +E DE+    +L A 
Sbjct: 401 CYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRAS 460

Query: 437 S 437
           S
Sbjct: 461 S 461



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 154/279 (55%), Gaps = 16/279 (5%)

Query: 164 VCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM 223
           +CG  +AV +   F + P   R   +W T+I AYV    P  A+  ++     N+R +G+
Sbjct: 89  LCGKRRAVSQEKVFDEMPD--RTAFAWNTMIGAYVSNGEPASALALYW-----NMRVEGV 141

Query: 224 ILVI-----VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            L +     +L AC+KL D+  G ++H  +    ++ +   FI NAL+ MY K  ++ +A
Sbjct: 142 PLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTG--FIVNALVSMYAKNDDLSAA 199

Query: 279 RKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           R++FD    K + V WNS+++  +  G+  E L++FR M   G  P+ +T+V  L +C  
Sbjct: 200 RRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDG 259

Query: 338 IGWLELGKWVHTYLDKNHI-NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
             + +LGK +H  + K+   +++ ++ NAL+ MY +CG++ QA  + R M   DV ++ +
Sbjct: 260 FSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNS 319

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +I G   +    +AL+ FS+M   G + DEV+   +++A
Sbjct: 320 LIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 358



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 12/231 (5%)

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
           S  KVFDEMP +   +WN+MI      G+   AL ++  M+  G+     +   +L +CA
Sbjct: 97  SQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACA 156

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYT 395
            +  +  G  +H+ L K   ++ GFI NALV MYAK   +  A  +F   + + D   + 
Sbjct: 157 KLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWN 216

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC---SHAGLVEEGCKHFLDM 452
           +++   +  GK+ + L++F EM   G  P+  T V  L+AC   S+A L +E     +  
Sbjct: 217 SILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKE-----IHA 271

Query: 453 SRVYNLQPQTEHYGC--MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           S + +    +E Y C  ++ ++ R G + +A  +++ M    D   W +L+
Sbjct: 272 SVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 321


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 182/509 (35%), Positives = 283/509 (55%), Gaps = 8/509 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A  ++ EML   + PN +T+  VLKAC   ++L  G   H+ + K  +  +VYV N L+
Sbjct: 92  QAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALL 151

Query: 160 RLYAV-CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
            +YA  C  +     +F+        +  VSWTTLI  +         +L+F  M   ++
Sbjct: 152 DMYAASCATMDDALSVFN----DIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDV 207

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            P+     I   AC+ +   S G +IH  +T   + L  D  + N+++DMY +C  +  A
Sbjct: 208 GPNSFSFSIAARACASISSYSCGKQIHAAVT--KYGLHCDAPVMNSILDMYCRCNYLCDA 265

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           ++ F E+  KN+++WN++IAG   R    E+L +F +M   G KP+ FT   +  +CAN+
Sbjct: 266 KRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANL 324

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             L  G+ VH  + +   + +  + N+L+DMYAKCG I  +  +F  M  RD+ S+T M+
Sbjct: 325 AVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMM 384

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
           +G   HG   +A+ +F EM Q GI+PD + F+GVL  CSHAGLV++G K+F  M   YN+
Sbjct: 385 IGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNI 444

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P  E Y C+VDL GRAG + EA  L+++MP  PD  VWGALLGACK +    L  +  +
Sbjct: 445 NPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQ 504

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            ++   P   G Y+L++ IY+++ +W E  K+RK MK    KK  G S +E+  E Y F 
Sbjct: 505 RVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRNEVYSFV 564

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            G K  P    ++K++D ++   K+ G I
Sbjct: 565 VGAKMGPHIEWVHKVIDVLIWHMKDDGDI 593



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 138/274 (50%), Gaps = 16/274 (5%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENL-----SLQNPQVYLY 86
           SS S G  KQ HA + K G   H    + + I+ +  R N + +       L    +  +
Sbjct: 225 SSYSCG--KQIHAAVTKYG--LHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITW 280

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           N +I     ++  E+++L+ +M  +G  PN +T   +  AC     L  GQQVH   ++ 
Sbjct: 281 NTLIAGYERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRR 340

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
               NV + N+L+ +YA CG I   HKLF         RDLVSWTT++  Y    Y  EA
Sbjct: 341 GFDKNVALINSLIDMYAKCGSISDSHKLF----CDMPGRDLVSWTTMMIGYGAHGYGKEA 396

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F +M Q+ ++PD ++ + VL  CS  G +  G+K  R + ++ +N++PD  I+  ++
Sbjct: 397 VKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLED-YNINPDQEIYRCVV 455

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVS-WNSMIAG 299
           D+  + G +  A ++ + MP +   S W +++  
Sbjct: 456 DLLGRAGRVEEAFQLVENMPFEPDESVWGALLGA 489



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 157/379 (41%), Gaps = 49/379 (12%)

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           P V+  N LI  Y   G    A  +F+E+P ++VV+W +MI G T    + +A  +F  M
Sbjct: 42  PSVWATN-LIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEM 100

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY-AKCGR 375
               ++P+ FT+  VL +C  +  L  G   H+   K+ I+   ++ NAL+DMY A C  
Sbjct: 101 LRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCAT 160

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +D A  VF  +  +   S+T +I G    G  +  L  F +M    + P+  +F     A
Sbjct: 161 MDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARA 220

Query: 436 CS-----------HAGLVEEG-----------------CKHFLDMSRVYN--LQPQTEHY 465
           C+           HA + + G                 C +  D  R +    +     +
Sbjct: 221 CASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITW 280

Query: 466 GCMVDLFGRAGLIREALDL---IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
             ++  + R+    E+L L   + S    P+ F + ++  AC   A +   + V   +VR
Sbjct: 281 NTLIAGYERSD-SSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVR 339

Query: 523 FEPEGDGAYI-LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581
              + + A I  + ++Y+      ++ KL   M        PG  LV     +     G 
Sbjct: 340 RGFDKNVALINSLIDMYAKCGSISDSHKLFCDM--------PGRDLV----SWTTMMIGY 387

Query: 582 KSHPKTLEIYKLLDEIMHQ 600
            +H    E  KL DE++  
Sbjct: 388 GAHGYGKEAVKLFDEMVQS 406


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 191/500 (38%), Positives = 284/500 (56%), Gaps = 12/500 (2%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN---VYVFNTLMRLYAVCGLI 168
           GL PN  TL  +L    Q  +L  G  +HAY ++  L  N   V +   L+ +YA C  +
Sbjct: 197 GLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQL 256

Query: 169 KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL-RPDGMILVI 227
               ++FH        R+ V+W+ LI  +V  D  TEA   F DM    L       +  
Sbjct: 257 VYACRVFH----GMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVAS 312

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
            L  C+ L DL +G ++H  I  +   +  D+   N+L+ MY K G I  A   FDE+ V
Sbjct: 313 ALRVCASLADLHMGTQLHALIAKS--GIHADLTASNSLLSMYAKAGLINEATMFFDEIAV 370

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K+ +S+ ++++G    G+ +EA  +F++MQ   ++PD  T+V ++ +C+++  L+ GK  
Sbjct: 371 KDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS 430

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H  +    +  +  I N+L+DMYAKCG+ID +  VF  M  RDV S+  MI G  IHG  
Sbjct: 431 HGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLG 490

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD-MSRVYNLQPQTEHYG 466
            +A  +F  M   G  PD+VTF+ +++ACSH+GLV EG KH+ D M+  Y + P+ EHY 
Sbjct: 491 KEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEG-KHWFDTMTHKYGILPRMEHYI 549

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CMVDL  R GL+ EA   I+SMPL  D  VWGALLGAC+IH  ++L + V   + +  PE
Sbjct: 550 CMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPE 609

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
           G G ++L++NI+S+  R+ EA ++R   K +  KK+PG S +E+ G  + F  GD+SHP 
Sbjct: 610 GTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPC 669

Query: 587 TLEIYKLLDEIMHQSKNHGY 606
           + +IY  LD IM   K  GY
Sbjct: 670 SRDIYHELDNIMVDIKKLGY 689



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 138/433 (31%), Positives = 209/433 (48%), Gaps = 12/433 (2%)

Query: 81  PQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           P    YN +I+  S   P  A I LYR ML   + PN YT P+VLKAC     LR G+ +
Sbjct: 63  PDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTI 122

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           HA++    L ++++V   L+ LY  C        +F         RD+V+W  ++  Y  
Sbjct: 123 HAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVF----AKMPMRDVVAWNAMLAGYAN 178

Query: 200 MDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
                 AI    DM     LRP+   LV +L   ++ G L  G  IH Y        + +
Sbjct: 179 HGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEE 238

Query: 259 -VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
            V I  AL+DMY KC  +  A +VF  MPV+N V+W+++I G     +  EA ++F+ M 
Sbjct: 239 QVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDML 298

Query: 318 GLGLKPDDFTLVC-VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
             GL     T V   L  CA++  L +G  +H  + K+ I+ D    N+L+ MYAK G I
Sbjct: 299 VEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLI 358

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           ++A   F  +  +D  SY A++ G   +GKA +A  +F +M    +EPD  T V ++ AC
Sbjct: 359 NEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPAC 418

Query: 437 SHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           SH   ++ G C H   + R   L  +T     ++D++ + G I  +  +   MP   D  
Sbjct: 419 SHLAALQHGKCSHGSVIIR--GLALETSICNSLIDMYAKCGKIDLSRQVFDKMP-ARDVV 475

Query: 496 VWGALLGACKIHA 508
            W  ++    IH 
Sbjct: 476 SWNTMIAGYGIHG 488



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 171/363 (47%), Gaps = 29/363 (7%)

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           D  ++  LI+AY  +     AI  +  M +  + P+      VL ACS L DL  G  IH
Sbjct: 64  DARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIH 123

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
            +       L  D+F+  ALID+Y++C     AR VF +MP+++VV+WN+M+AG  + G 
Sbjct: 124 AHAAAA--GLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGM 181

Query: 306 FKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKWVHTY-----LDKNHINTD 359
           +  A+     MQ   GL+P+  TLV +L   A  G L  G  +H Y     L++N     
Sbjct: 182 YHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQV- 240

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             IG AL+DMYAKC ++  A  VF  M  R+  +++A+I G  +  +  +A ++F +M  
Sbjct: 241 -LIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLV 299

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL-------- 471
            G+          LSA S A  +   C    D+     L       G   DL        
Sbjct: 300 EGL--------CFLSATSVASALRV-CASLADLHMGTQLHALIAKSGIHADLTASNSLLS 350

Query: 472 -FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
            + +AGLI EA      +  V D   +GALL  C  + K E A +V + +     E D A
Sbjct: 351 MYAKAGLINEATMFFDEIA-VKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIA 409

Query: 531 YIL 533
            ++
Sbjct: 410 TMV 412



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 118/241 (48%), Gaps = 4/241 (1%)

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           ++ ++  G +  AR+VFD +P  +  ++N++I   +  G F  A+D++R M    + P+ 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
           +T   VL +C+ +  L  G+ +H +     ++TD F+  AL+D+Y +C R   A  VF  
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSHAGLVEE 444
           M  RDV ++ AM+ G A HG    A+    +M    G+ P+  T V +L   +  G + +
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 445 GCK-HFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           G   H   +        +    G  ++D++ +   +  A  +   MP+  D   W AL+G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDV-TWSALIG 279

Query: 503 A 503
            
Sbjct: 280 G 280


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 186/516 (36%), Positives = 290/516 (56%), Gaps = 48/516 (9%)

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           L+AC    S R   +VHA++++ +L  + Y+   ++ L    G +    ++F   + P  
Sbjct: 20  LRAC---ASFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREP-- 74

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP-------DGMILVIVLSACSKLG 236
             +L     +I+AY +     +AI  +  M +    P       D      +L AC  L 
Sbjct: 75  --NLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLM 132

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD------------- 283
            L LG ++H ++  +      +  + N+LI+MY + G++  ARKVFD             
Sbjct: 133 ALDLGKQVHGHVVRS--GCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTV 190

Query: 284 ------------------EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
                              MP K VVSW ++++G T  G F  A++ FR MQ  G +PDD
Sbjct: 191 ISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDD 250

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
            ++V VL +CA +G LELG+W++ Y +++ +  + ++ NALV+MYAKCG IDQA  +F  
Sbjct: 251 VSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNG 310

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEE 444
           M  +DV S++ M+ GLA HG+A +A+ +F+EM + G ++P+ +TFVG+LSACSHAGL++E
Sbjct: 311 MAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDE 370

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G  +F  M+ VY ++P  EHYGC+VDL  R+G I+  LDLI  MPL  DA +WG++L AC
Sbjct: 371 GLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNAC 430

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           + H  V+ A +  E LV  EPE  G  +++ N+Y++  RW E    RK ++ R ++KTPG
Sbjct: 431 RSHGDVDTAVLAAERLVALEPEDVGNLVMLANVYAAARRWSEVANTRKAIRSRSMRKTPG 490

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
           CSL+EV     EF  G+   P+   +  +LD +  Q
Sbjct: 491 CSLIEVDNVVQEFVAGEDLKPEFGGLSGVLDILASQ 526



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 203/424 (47%), Gaps = 82/424 (19%)

Query: 78  LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLP-------NTYTLPYVLKACWQ 129
           ++ P ++L+N +I+  + N   L+AI +Y  ML +   P       + +T P++LKAC  
Sbjct: 71  VREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGG 130

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
             +L +G+QVH + +++   SN  V N+L+ +Y   G +    K+F   Q    +RD+VS
Sbjct: 131 LMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQ----ERDVVS 186

Query: 190 WTTLIQAYVKM-----------DYPTEAILS--------------------FFDMCQANL 218
           W T+I A+ ++             P + ++S                    F  M     
Sbjct: 187 WNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGF 246

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            PD + +V VL AC++LG L LG  I+ Y   N   +  + ++ NAL++MY KCG I  A
Sbjct: 247 EPDDVSIVAVLPACAQLGALELGRWIYAYC--NRHQMLRETYVCNALVEMYAKCGCIDQA 304

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCAN 337
            ++F+ M  K+V+SW++M+ GL   G+ +EA+ +F  M+  G +KP+  T V +L++C++
Sbjct: 305 LQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSH 364

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
            G L+ G     Y D+            + D+Y     ++  +G    + CR        
Sbjct: 365 AGLLDEGL---DYFDR------------MNDVYGIEPGVEH-YGCIVDLLCRS------- 401

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
                  G+  + LD+ S+M    +  D   +  VL+AC   G V+      L   R+  
Sbjct: 402 -------GQIQRTLDLISDMP---LPADAKIWGSVLNACRSHGDVDTA---VLAAERLVA 448

Query: 458 LQPQ 461
           L+P+
Sbjct: 449 LEPE 452



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 115/227 (50%), Gaps = 9/227 (3%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+  +R M ++G  P+  ++  VL AC Q  +L +G+ ++AY  +  +L   YV N L+ 
Sbjct: 234 AVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVE 293

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLR 219
           +YA CG I    +LF    +  A++D++SW+T++          EA+  F +M  Q  ++
Sbjct: 294 MYAKCGCIDQALQLF----NGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVK 349

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+G+  V +LSACS  G L  G+     + D  + + P V  +  ++D+  + G I    
Sbjct: 350 PNGITFVGLLSACSHAGLLDEGLDYFDRMNDV-YGIEPGVEHYGCIVDLLCRSGQIQRTL 408

Query: 280 KVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
            +  +MP+  +   W S++      G    A+    R+  + L+P+D
Sbjct: 409 DLISDMPLPADAKIWGSVLNACRSHGDVDTAVLAAERL--VALEPED 453


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 186/569 (32%), Positives = 313/569 (55%), Gaps = 11/569 (1%)

Query: 42  QFHAFIIKTG-SPQ----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H   +K G  P+    +    +Y K   L     +  L  ++  V     I  C+ N 
Sbjct: 269 QLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNG 328

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
              +A+ L+ +M   GL P++ TL  +L A  +    + G+++H Y ++     +V++ +
Sbjct: 329 LVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVS 388

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+ +Y  C  ++    +F   +      D+V  +T+I  YV       A+  F  +   
Sbjct: 389 ALVDIYFKCRDVRMAQNVFDATK----SIDVVIGSTMISGYVLNRMSEAAVKMFRYLLAL 444

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            ++P+ +++   L AC+ +  + +G ++H Y+  N +      ++ +AL+DMY KCG + 
Sbjct: 445 GIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYE--GRCYVESALMDMYSKCGRLD 502

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            +  +F +M  K+ V+WNSMI+     G+ +EALD+FR+M   G+K ++ T+  +L++CA
Sbjct: 503 LSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACA 562

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
            +  +  GK +H  + K  I  D F  +AL+DMY KCG ++ A  VF  M  ++  S+ +
Sbjct: 563 GLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNS 622

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I     HG   +++D+   M + G + D VTF+ ++SAC+HAG V+EG + F  M+  Y
Sbjct: 623 IISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEY 682

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
           +++PQ EH  CMVDL+ RAG + +A+  I  MP  PDA +WGALL AC++H  VELAEI 
Sbjct: 683 HIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIA 742

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            + L + +P   G Y+LM+NI +   RW    K+R+ MK++KV+K PG S V+V    + 
Sbjct: 743 SQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVNNTSHL 802

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           F   DK+HP + EIY  L  ++ + K  G
Sbjct: 803 FVAADKNHPDSEEIYMSLKSLIIELKQEG 831



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 238/461 (51%), Gaps = 15/461 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
            A+ L+R M   G  PN  TL   L  C     L  G Q+H  ++K  L   V V NTL+
Sbjct: 231 SAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLV 290

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA C  ++   +LF        + DLV+W  +I   V+     +A+  F DM ++ L+
Sbjct: 291 SMYAKCQCLEEAWRLFGL----MPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQ 346

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + L  +L A ++L     G +IH YI  N  ++  DVF+ +AL+D+Y KC ++  A+
Sbjct: 347 PDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHV--DVFLVSALVDIYFKCRDVRMAQ 404

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            VFD     +VV  ++MI+G       + A+ +FR +  LG+KP+   +   L +CA++ 
Sbjct: 405 NVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMA 464

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            + +G+ +H Y+ KN      ++ +AL+DMY+KCGR+D +  +F  M  +D  ++ +MI 
Sbjct: 465 AMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMIS 524

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
             A +G+  +ALD+F +M   G++ + VT   +LSAC+    +  G K    +     ++
Sbjct: 525 SFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYG-KEIHGIIIKGPIR 583

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
                   ++D++G+ G +  AL + + MP   +   W +++ A   H  V+ +   ++ 
Sbjct: 584 ADLFAESALIDMYGKCGNLELALRVFEHMP-EKNEVSWNSIISAYGAHGLVKES---VDL 639

Query: 520 LVRFEPEGDGA----YILMTNIYSSKNRWKEALKLRKKMKE 556
           L   + EG  A    ++ + +  +   + +E L+L + M E
Sbjct: 640 LCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTE 680



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 163/338 (48%), Gaps = 10/338 (2%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV-----YVFNTLMRLYAVCGLIK 169
           P  Y L  +L+ C     L +G ++HA ++ + LL         +   L+ +Y +    +
Sbjct: 34  PCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFR 93

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ--ANLRPDGMILVI 227
               +F       A   L  W  LI+ +    +   A+L +  M    ++ RPDG  L  
Sbjct: 94  DAVAVFSSLPRAAAAAAL-PWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPY 152

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           V+ +C+ LG L LG  +HR  T     L  D+++ +ALI MY   G +  AR+VFD M  
Sbjct: 153 VVKSCAALGALHLGRLVHR--TTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDE 210

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           ++ V WN M+ G    G    A+ +FR M+  G  P+  TL C L+ CA    L  G  +
Sbjct: 211 RDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQL 270

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           HT   K  +  +  + N LV MYAKC  +++A+ +F  M   D+ ++  MI G   +G  
Sbjct: 271 HTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLV 330

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
             AL +F +M + G++PD VT   +L A +     ++G
Sbjct: 331 DDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQG 368



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 130/297 (43%), Gaps = 12/297 (4%)

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLS--PDVFIHNALIDMYLKCG 273
           N  P    L+ +L  C     L LG++IH R +T    + +      +   L+ MY+   
Sbjct: 31  NASPCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLAR 90

Query: 274 NIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG--LGLKPDDFTL 328
               A  VF  +P       + WN +I G T  G  + A+  + +M       +PD  TL
Sbjct: 91  RFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTL 150

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             V+ SCA +G L LG+ VH       ++ D ++G+AL+ MYA  G +D A  VF  M  
Sbjct: 151 PYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDE 210

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK- 447
           RD   +  M+ G    G    A+ +F  M   G +P+  T    LS C+    +  G + 
Sbjct: 211 RDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQL 270

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           H L +   Y L+P+      +V ++ +   + EA  L   MP   D   W  ++  C
Sbjct: 271 HTLAVK--YGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPR-DDLVTWNGMISGC 324


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 191/516 (37%), Positives = 294/516 (56%), Gaps = 7/516 (1%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N N  +A+ +  EM ++G+  N  T+  +L  C Q   +     +H Y +K  L  ++
Sbjct: 292 IQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDL 351

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           +V N L+ +YA  G ++   K F          D+VSW ++I AY + D P  A   F  
Sbjct: 352 FVSNALINMYAKFGNLEDARKAFQ----QMFITDVVSWNSIIAAYEQNDDPVTAHGFFVK 407

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M     +PD + LV + S  ++  D      +H +I    + L  DV I NA++DMY K 
Sbjct: 408 MQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGW-LMEDVVIGNAVVDMYAKL 466

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCV 331
           G + SA KVF+ + VK+V+SWN++I G    G   EA+++++ M+    + P+  T V +
Sbjct: 467 GLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSI 526

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L + A++G L+ G  +H  + K +++ D F+   L+D+Y KCGR+  A  +F  +     
Sbjct: 527 LPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS 586

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            ++ A+I    IHG A K L +F EM   G++PD VTFV +LSACSH+G VEEG K    
Sbjct: 587 VTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEG-KWCFR 645

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           + + Y ++P  +HYGCMVDL GRAG +  A   IK MPL PDA +WGALLGAC+IH  +E
Sbjct: 646 LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIE 705

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           L +   + L   + +  G Y+L++NIY++  +W+   K+R   +ER +KKTPG S +EV 
Sbjct: 706 LGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVN 765

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +   F  G++SHPK  EIY+ L  +  + K+ GYI
Sbjct: 766 RKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYI 801



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 149/492 (30%), Positives = 250/492 (50%), Gaps = 25/492 (5%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQH---QTQI--LYDKI--ISLSRGNEIENLSLQNPQV 83
            +SS      K  HA ++  G  Q     T++  LY  +  +SLSR    +   +    V
Sbjct: 126 FDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQ---IPQKDV 182

Query: 84  YLYNFIIQC-LSNANPLEAIA-LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           Y +N +I   + N +  EAI   Y+ +L+  + P+ YT P VLKAC    +L  G+++H 
Sbjct: 183 YTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIHC 239

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           ++ K     NV+V  +L+ +Y+  G       LF         RD+ SW  +I   ++  
Sbjct: 240 WAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF----DDMPFRDMGSWNAMISGLIQNG 295

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
              +A+    +M    ++ + + +V +L  C +LGD+S  + IH Y+  +   L  D+F+
Sbjct: 296 NAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKH--GLEFDLFV 353

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            NALI+MY K GN+  ARK F +M + +VVSWNS+IA          A   F +MQ  G 
Sbjct: 354 SNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGF 413

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTY-LDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           +PD  TLV + +  A     +  + VH + + +  +  D  IGNA+VDMYAK G +D A 
Sbjct: 414 QPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAH 473

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHA 439
            VF  +  +DV S+  +I G A +G A +A++++  M +   I P++ T+V +L A +H 
Sbjct: 474 KVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHV 533

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           G +++G +    + +  NL        C++D++G+ G + +A+ L   +P    +  W A
Sbjct: 534 GALQQGMRIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQ-ESSVTWNA 591

Query: 500 LLGACKIHAKVE 511
           ++    IH   E
Sbjct: 592 IISCHGIHGHAE 603



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 213/446 (47%), Gaps = 27/446 (6%)

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +HA  +    + ++++   L+ LYA  G +      F   Q PQ  +D+ +W ++I AYV
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFD--QIPQ--KDVYTWNSMISAYV 193

Query: 199 KMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
              +  EAI  F+ +   + +RPD      VL AC  L D   G +IH +     F    
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQW-- 248

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           +VF+  +LI MY + G    AR +FD+MP +++ SWN+MI+GL   G   +ALD+   M+
Sbjct: 249 NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 308

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             G+K +  T+V +L  C  +G +     +H Y+ K+ +  D F+ NAL++MYAK G ++
Sbjct: 309 LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLE 368

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F+ M   DV S+ ++I     +     A   F +M   G +PD +T V + S  +
Sbjct: 369 DARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVA 428

Query: 438 HAGLVEEGCK-----HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
            +      CK     H   M R + L         +VD++ + GL+  A  + + + LV 
Sbjct: 429 QS----RDCKNSRSVHGFIMRRGW-LMEDVVIGNAVVDMYAKLGLLDSAHKVFEII-LVK 482

Query: 493 DAFVWGALL-GACKIHAKVELAEI--VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549
           D   W  L+ G  +     E  E+  +ME      P   G ++ +   Y+     ++ ++
Sbjct: 483 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPN-QGTWVSILPAYAHVGALQQGMR 541

Query: 550 LRKKMKERKVKKT--PGCSLVEVYGE 573
           +  ++ +  +         L++VYG+
Sbjct: 542 IHGRVIKTNLHLDVFVATCLIDVYGK 567


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 191/500 (38%), Positives = 284/500 (56%), Gaps = 12/500 (2%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN---VYVFNTLMRLYAVCGLI 168
           GL PN  TL  +L    Q  +L  G  +HAY ++  L  N   V +   L+ +YA C  +
Sbjct: 197 GLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQL 256

Query: 169 KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL-RPDGMILVI 227
               ++FH        R+ V+W+ LI  +V  D  TEA   F DM    L       +  
Sbjct: 257 VYACRVFH----GMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVAS 312

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
            L  C+ L DL +G ++H  I  +   +  D+   N+L+ MY K G I  A   FDE+ V
Sbjct: 313 ALRVCASLADLHMGTQLHALIAKS--GIHADLTASNSLLSMYAKAGLINEATMFFDEIAV 370

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K+ +S+ ++++G    G+ +EA  +F++MQ   ++PD  T+V ++ +C+++  L+ GK  
Sbjct: 371 KDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS 430

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H  +    +  +  I N+L+DMYAKCG+ID +  VF  M  RDV S+  MI G  IHG  
Sbjct: 431 HGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLG 490

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD-MSRVYNLQPQTEHYG 466
            +A  +F  M   G  PD+VTF+ +++ACSH+GLV EG KH+ D M+  Y + P+ EHY 
Sbjct: 491 KEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEG-KHWFDTMTHKYGILPRMEHYI 549

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CMVDL  R GL+ EA   I+SMPL  D  VWGALLGAC+IH  ++L + V   + +  PE
Sbjct: 550 CMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPE 609

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
           G G ++L++NI+S+  R+ EA ++R   K +  KK+PG S +E+ G  + F  GD+SHP 
Sbjct: 610 GTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPC 669

Query: 587 TLEIYKLLDEIMHQSKNHGY 606
           + +IY  LD IM   K  GY
Sbjct: 670 SRDIYHELDNIMVDIKKLGY 689



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 138/433 (31%), Positives = 209/433 (48%), Gaps = 12/433 (2%)

Query: 81  PQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           P    YN +I+  S   P  A I LYR ML   + PN YT P+VLKAC     LR G+ +
Sbjct: 63  PDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTI 122

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           HA++    L ++++V   L+ LY  C        +F         RD+V+W  ++  Y  
Sbjct: 123 HAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVF----AKMPMRDVVAWNAMLAGYAN 178

Query: 200 MDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
                 AI    DM     LRP+   LV +L   ++ G L  G  IH Y        + +
Sbjct: 179 HGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEE 238

Query: 259 -VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
            V I  AL+DMY KC  +  A +VF  MPV+N V+W+++I G     +  EA ++F+ M 
Sbjct: 239 QVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDML 298

Query: 318 GLGLKPDDFTLVC-VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
             GL     T V   L  CA++  L +G  +H  + K+ I+ D    N+L+ MYAK G I
Sbjct: 299 VEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLI 358

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           ++A   F  +  +D  SY A++ G   +GKA +A  +F +M    +EPD  T V ++ AC
Sbjct: 359 NEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPAC 418

Query: 437 SHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           SH   ++ G C H   + R   L  +T     ++D++ + G I  +  +   MP   D  
Sbjct: 419 SHLAALQHGKCSHGSVIIR--GLALETSICNSLIDMYAKCGKIDLSRQVFDKMP-ARDVV 475

Query: 496 VWGALLGACKIHA 508
            W  ++    IH 
Sbjct: 476 SWNTMIAGYGIHG 488



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 171/363 (47%), Gaps = 29/363 (7%)

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           D  ++  LI+AY  +     AI  +  M +  + P+      VL ACS L DL  G  IH
Sbjct: 64  DARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIH 123

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
            +       L  D+F+  ALID+Y++C     AR VF +MP+++VV+WN+M+AG  + G 
Sbjct: 124 AHAAAA--GLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGM 181

Query: 306 FKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKWVHTY-----LDKNHINTD 359
           +  A+     MQ   GL+P+  TLV +L   A  G L  G  +H Y     L++N     
Sbjct: 182 YHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQV- 240

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             IG AL+DMYAKC ++  A  VF  M  R+  +++A+I G  +  +  +A ++F +M  
Sbjct: 241 -LIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLV 299

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL-------- 471
            G+          LSA S A  +   C    D+     L       G   DL        
Sbjct: 300 EGL--------CFLSATSVASALRV-CASLADLHMGTQLHALIAKSGIHADLTASNSLLS 350

Query: 472 -FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
            + +AGLI EA      +  V D   +GALL  C  + K E A +V + +     E D A
Sbjct: 351 MYAKAGLINEATMFFDEIA-VKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIA 409

Query: 531 YIL 533
            ++
Sbjct: 410 TMV 412



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 118/241 (48%), Gaps = 4/241 (1%)

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           ++ ++  G +  AR+VFD +P  +  ++N++I   +  G F  A+D++R M    + P+ 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
           +T   VL +C+ +  L  G+ +H +     ++TD F+  AL+D+Y +C R   A  VF  
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSHAGLVEE 444
           M  RDV ++ AM+ G A HG    A+    +M    G+ P+  T V +L   +  G + +
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 445 GCK-HFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           G   H   +        +    G  ++D++ +   +  A  +   MP+  D   W AL+G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDV-TWSALIG 279

Query: 503 A 503
            
Sbjct: 280 G 280


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 181/526 (34%), Positives = 290/526 (55%), Gaps = 43/526 (8%)

Query: 85  LYNFIIQCLSNAN-PLEAIALYREMLIKG--LLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
            +N +++ L+ A+   +A+ L+  M  +G    P+ YT P  LK+C  +  L +G+Q+H+
Sbjct: 87  FFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQIHS 146

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
            + +  L  NV+V ++ + +YA CG     +++F   Q+    RD+VSW  +I  +    
Sbjct: 147 STARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQY----RDVVSWNAMISGFAHAG 202

Query: 202 YPTEAILSFFDMCQANL-RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               A+  F ++      +PD   +  +L +  K                          
Sbjct: 203 LFGRAMDVFRELVALQCPKPDAGTMASILPSMGKA------------------------- 237

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
                     +  +I   + VFDEM  K ++SWN+M+A  T+     EA+++F RMQ  G
Sbjct: 238 ----------RVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDG 287

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           ++PD  TL  VL SC  +  L LGK +H  + +  + +   + NAL+DMYA CG + +A 
Sbjct: 288 IEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEAR 347

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF SM  RDV S+T++I     HG   +A+D+F +M   G+EPD + FV +L+ACSHAG
Sbjct: 348 DVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAG 407

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           L++ G  +F  M+  +++ P+ EHY CMVDL GRAG IREA D I  MP+ P+  VWGAL
Sbjct: 408 LLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGAL 467

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           LGAC+IH+ +++  +  ++L+R  P+  G Y+L++NIY+   RW +   +R  M+ + +K
Sbjct: 468 LGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIK 527

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           K PG S  E+    + F  GD SHP++  IYK L E++ + +  GY
Sbjct: 528 KLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGY 573



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 146/332 (43%), Gaps = 50/332 (15%)

Query: 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV-------IVLSACSKLGD 237
           R  V +  L++         +A+L F     A++RP G           + L +C+    
Sbjct: 83  RTTVFFNVLLRGLTAASLHRDALLLF-----ASMRPQGHACFPDHYTYPLALKSCAATDG 137

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L LG +IH   +     L  +VF+ ++ I MY +CG    A ++F+EM  ++VVSWN+MI
Sbjct: 138 LVLGRQIHS--STARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 298 AGLTHRGQFKEALDIFRRMQGLGL-KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           +G  H G F  A+D+FR +  L   KPD  T+  +L S        +GK           
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS--------MGK----------- 236

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
                         A+   I    GVF  M+ + + S+ AM+     +    +A+++F  
Sbjct: 237 --------------ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMR 282

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M + GIEPD VT   VL +C     +  G K   ++ +   +         ++D++   G
Sbjct: 283 MQKDGIEPDAVTLATVLPSCGEVSALSLG-KRIHEVIKRRRMCSSMLLENALMDMYANCG 341

Query: 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
            ++EA D+  SM    D   W +++ A   H 
Sbjct: 342 CLKEARDVFDSMG-TRDVVSWTSIISAYGRHG 372



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 144/311 (46%), Gaps = 20/311 (6%)

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM--QGLGLKPDDFTLVCVLNSCANI 338
           V D  P +  V +N ++ GLT     ++AL +F  M  QG    PD +T    L SCA  
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             L LG+ +H+   +  ++ + F+ ++ + MYA+CGR D A+ +F  M+ RDV S+ AMI
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 399 VGLAIHGKAWKALDIFSEMSQVGI-EPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVY 456
            G A  G   +A+D+F E+  +   +PD  T   +L +   A + +    K   D  R  
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFK 255

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP---LVPDAFVWGALLGACKIHAKVELA 513
            L      +  M+ ++    +  EA++L   M    + PDA     +L +C   + + L 
Sbjct: 256 GLIS----WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLG 311

Query: 514 EIVMENLVRFEPEGDGAYILMTN----IYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           + + E + R       + +L+ N    +Y++    KEA  +   M  R V      S++ 
Sbjct: 312 KRIHEVIKRRRM---CSSMLLENALMDMYANCGCLKEARDVFDSMGTRDV--VSWTSIIS 366

Query: 570 VYGEFYEFRKG 580
            YG     R+ 
Sbjct: 367 AYGRHGHGREA 377


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 193/516 (37%), Positives = 289/516 (56%), Gaps = 21/516 (4%)

Query: 104 LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN----------VY 153
           L  +M +  L PN  TL  +L    Q  +L  G  VHAY ++  L  N          V 
Sbjct: 100 LSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVL 159

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           +   L+ +YA CG +    ++F         R+ V+W+ LI  +V     T+A L F  M
Sbjct: 160 LGTALLDMYAKCGSLLYARRVFD----AMPARNEVTWSALIGGFVLCSRMTQAFLLFKAM 215

Query: 214 CQANL---RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
               L    P    +   L AC+ L  L +G ++H  +  +   +  D+   N+L+ MY 
Sbjct: 216 LAQGLCFLSPTS--IASALRACASLDHLRMGEQLHALLAKS--GVHADLTAGNSLLSMYA 271

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           K G I  A  +FDEM VK+ VS++++++G    G+ +EA  +F++MQ   ++PD  T+V 
Sbjct: 272 KAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVS 331

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           ++ +C+++  L+ G+  H  +    + ++  I NAL+DMYAKCGRID +  VF  M  RD
Sbjct: 332 LIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD 391

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           + S+  MI G  IHG   +A  +F EM+ +G  PD VTF+ +LSACSH+GLV EG   F 
Sbjct: 392 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFH 451

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M   Y L P+ EHY CMVDL  R G + EA + I+SMPL  D  VW ALLGAC+++  +
Sbjct: 452 VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNI 511

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           +L + V   +    PEG G ++L++NIYS+  R+ EA ++R   K +  KK+PGCS +E+
Sbjct: 512 DLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEI 571

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            G  + F  GD+SHP++ EIY+ LD I+   K  GY
Sbjct: 572 NGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGY 607



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 217/436 (49%), Gaps = 25/436 (5%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           ML   + PN YT P+ LKAC        G+ +H +++   L ++++V   L+ +Y  C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK--MDYPTEAILSFFDMCQANLRPDGMIL 225
           +     +F         RDLV+W  ++  Y    M +   A L    M    LRP+   L
Sbjct: 61  LPDAAHIF----ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTL 116

Query: 226 VIVLSACSKLGDLSLGIKIHRYIT--------DNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           V +L   ++ G L+ G  +H Y          ++   L+  V +  AL+DMY KCG++  
Sbjct: 117 VALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLY 176

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM--QGLG-LKPDDFTLVCVLNS 334
           AR+VFD MP +N V+W+++I G     +  +A  +F+ M  QGL  L P   ++   L +
Sbjct: 177 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRA 234

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA++  L +G+ +H  L K+ ++ D   GN+L+ MYAK G IDQA  +F  M  +D  SY
Sbjct: 235 CASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSY 294

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMS 453
           +A++ G   +G+A +A  +F +M    +EPD  T V ++ ACSH   ++ G C H   + 
Sbjct: 295 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 354

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH--AKVE 511
           R   L  +T     ++D++ + G I  +  +   MP   D   W  ++    IH   K  
Sbjct: 355 R--GLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIHGLGKEA 411

Query: 512 LAEIVMENLVRFEPEG 527
            A  +  N + F P+G
Sbjct: 412 TALFLEMNNLGFPPDG 427



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 161/336 (47%), Gaps = 21/336 (6%)

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +  + P+       L ACS L D   G  IHR+    H  L  D+F+  AL+DMY+KC
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAI--HAGLQADLFVSTALLDMYVKC 58

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD--IFRRMQGLGLKPDDFTLVC 330
             +P A  +F  MP +++V+WN+M+AG  H G +  A+   +  +MQ   L+P+  TLV 
Sbjct: 59  ACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVA 118

Query: 331 VLNSCANIGWLELGKWVHTYLDKN--HIN-------TDG-FIGNALVDMYAKCGRIDQAF 380
           +L   A  G L  G  VH Y  +   H N       TDG  +G AL+DMYAKCG +  A 
Sbjct: 119 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 178

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG---IEPDEVTFVGVLSACS 437
            VF +M  R+  +++A+I G  +  +  +A  +F  M   G   + P  +     L AC+
Sbjct: 179 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACA 236

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
               +  G +    +     +         ++ ++ +AGLI +A+ L   M  V D   +
Sbjct: 237 SLDHLRMG-EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA-VKDTVSY 294

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
            AL+     + + E A +V + +     E D A ++
Sbjct: 295 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 330



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 6/229 (2%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           + N    EA  ++++M    + P+  T+  ++ AC    +L+ G+  H   +   L S  
Sbjct: 302 VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASET 361

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            + N L+ +YA CG I    ++F+        RD+VSW T+I  Y       EA   F +
Sbjct: 362 SICNALIDMYAKCGRIDLSRQVFNM----MPSRDIVSWNTMIAGYGIHGLGKEATALFLE 417

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M      PDG+  + +LSACS  G L +  K   ++  + + L+P +  +  ++D+  + 
Sbjct: 418 MNNLGFPPDGVTFICLLSACSHSG-LVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRG 476

Query: 273 GNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           G +  A +    MP++ +V  W +++              + R +Q LG
Sbjct: 477 GFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 525


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 182/532 (34%), Positives = 301/532 (56%), Gaps = 11/532 (2%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRV 135
           ++ +P   L+N ++  LS +   EA+  +  M+  G + P+  TL  VL A  +   + +
Sbjct: 174 TVPSPDTVLWNTLLAGLSGS---EAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTM 230

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G+ VH+++ K  L  + +V   L+ LY+ CG +++   LF   + P    DLV++  LI 
Sbjct: 231 GRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKP----DLVAYNALIS 286

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            Y        ++  F ++    L P+   LV ++   S  G   L   +H ++  + F  
Sbjct: 287 GYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTA 346

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
           +  V    A+  ++ +  ++ SARK FD MP K + SWN+MI+G    G  + A+ +F +
Sbjct: 347 NSPV--STAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQ 404

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M  L ++P+  T+   L++CA +G L LGKW+H  + +  +  + ++  AL+DMYAKCG 
Sbjct: 405 MVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGS 464

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           I +A  +F +M  ++V S+ AMI G  +HG+  +AL ++ +M    + P   TF+ VL A
Sbjct: 465 ISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYA 524

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP-LVPDA 494
           CSH GLVEEG K F  M+  Y + P  EH  CMVDL GRAG ++EA +LI   P      
Sbjct: 525 CSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGP 584

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            VWGALLGAC +H   +LA++  + L   +PE  G Y+L++N+++SK ++ EA  +R++ 
Sbjct: 585 GVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEA 644

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           K RK+ KTPG +L+E+  + + F  GD++HP++  IY  L+++  +    GY
Sbjct: 645 KSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGY 696



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 184/372 (49%), Gaps = 13/372 (3%)

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           +HA ++     ++ +V + L +LY V   +    K+F     P    D V W TL+    
Sbjct: 136 LHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVPSP----DTVLWNTLLAGLS 191

Query: 199 KMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
                +EA+ SF  M C  ++RPD   L  VL A +++ D+++G  +H +       L+ 
Sbjct: 192 G----SEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFA--EKCGLAE 245

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
              +   LI +Y KCG++ SAR +FD M   ++V++N++I+G +  G    ++++F  + 
Sbjct: 246 HEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELM 305

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
            LGL P+  TLV ++   +  G   L + +H ++ K+    +  +  A+  ++ +   ++
Sbjct: 306 TLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDME 365

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F +M  + + S+ AMI G A +G    A+ +F +M ++ + P+ +T    LSAC+
Sbjct: 366 SARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACA 425

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
             G +  G K    +    +L+P       ++D++ + G I EA  +  +M    +   W
Sbjct: 426 QLGALSLG-KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMD-NKNVVSW 483

Query: 498 GALLGACKIHAK 509
            A++    +H +
Sbjct: 484 NAMIAGYGLHGQ 495



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 161/339 (47%), Gaps = 43/339 (12%)

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           D F+ +AL  +Y     +  ARKVFD +P  + V WN+++AGL+      EA++ F RM 
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSG----SEAVESFARMV 203

Query: 318 GLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
             G ++PD  TL  VL + A +  + +G+ VH++ +K  +     +   L+ +Y+KCG +
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG----- 431
           + A  +F  M+  D+ +Y A+I G +++G    ++++F+E+  +G+ P+  T V      
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVH 323

Query: 432 ------VLSACSHAGLVEEG---------------CKHFLDMS---RVYNLQPQT--EHY 465
                 +L+ C H  +++ G               C+   DM    + ++  P+   E +
Sbjct: 324 SPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCR-LNDMESARKAFDTMPEKTMESW 382

Query: 466 GCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
             M+  + + GL   A+ L + M    + P+     + L AC     + L +  +  ++ 
Sbjct: 383 NAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKW-LHRIIT 441

Query: 523 FEPEGDGAYIL--MTNIYSSKNRWKEALKLRKKMKERKV 559
            E      Y++  + ++Y+      EA ++   M  + V
Sbjct: 442 EEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNV 480


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 180/506 (35%), Positives = 292/506 (57%), Gaps = 7/506 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI  +++M   G  P+  ++  ++ A  +S +L  G +VHAY++K  + SN+++ N+L+
Sbjct: 335 DAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLI 394

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y  C  +K +   F +      ++DL+SWTT+I  Y + +   +A+     +    + 
Sbjct: 395 DMYGKCCCVKYMGSAFEY----MPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMD 450

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            D M++  +L ACS L    L  +IH Y+         D+ I NA++++Y +   +  AR
Sbjct: 451 VDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL---ADILIQNAIVNVYGELALVDYAR 507

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            VF+ +  K++VSW SMI    H G   EAL++F  +    ++PD  TLV VL + A + 
Sbjct: 508 HVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALS 567

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ GK +H +L +     +G I N+LVDMYA+CG ++ A  +F  +K RD+  +T+MI 
Sbjct: 568 SLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMIN 627

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
              +HG    A+D+FS+M+   + PD +TF+ +L ACSH+GLV EG +HF  M   Y L+
Sbjct: 628 ANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLE 687

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  EHY C+VDL  R+  + EA   +++MP+ P A VW ALLGAC+IH+  +L E+  + 
Sbjct: 688 PWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKK 747

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L++   E  G Y+L++N +++  RW +  ++R  MK  K+KK PGCS +EV  + + F  
Sbjct: 748 LLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMA 807

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHG 605
            DKSHP+   IY  L +     K  G
Sbjct: 808 RDKSHPQCNNIYLKLAQFTKLLKEKG 833



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 125/413 (30%), Positives = 208/413 (50%), Gaps = 14/413 (3%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQI------LYDKIISLSRGNEIENLSLQNPQVYLY 86
           S K++ Q +Q HA  +KT +      +      +Y K  S     ++ +  +    ++ +
Sbjct: 58  SHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFD-KMSERTIFTW 116

Query: 87  NFII-QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           N +I  C+S    +EAI LY+EM + G+  + +T P VLKAC   +  R+G ++H  ++K
Sbjct: 117 NAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVK 176

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
                 V+V N L+ +YA CG +     LF        + D VSW ++I A+V      E
Sbjct: 177 CGYGGFVFVCNALIAMYAKCGDLGGARVLFD--SGLMEKDDPVSWNSIISAHVGEGESLE 234

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI-TDNHFNLSPDVFIHNA 264
           A+  F  M +  +  +    V  L AC     + +G  IH  I   NHF    DV++ NA
Sbjct: 235 ALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFT---DVYVSNA 291

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LI MY  CG +  A +VF  M  K+ VSWN++++G+     + +A++ F+ MQ  G KPD
Sbjct: 292 LIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPD 351

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             +++ ++ +      L  G  VH Y  K+ I+++  IGN+L+DMY KC  +      F 
Sbjct: 352 QVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFE 411

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            M  +D+ S+T +I G A +     AL++  ++    ++ D +    +L ACS
Sbjct: 412 YMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACS 464



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 132/485 (27%), Positives = 232/485 (47%), Gaps = 45/485 (9%)

Query: 114 LPNTYTLPY------VLKACWQSQSLRVGQQVHAYSMKTA-LLSNVYVFNTLMRLYAVCG 166
           LP T   P        L+ C   ++L  GQQ+HA+ +KT   L +V++    + +Y  CG
Sbjct: 37  LPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCG 96

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
                 K+F       ++R + +W  +I A V      EAI  + +M    +  D     
Sbjct: 97  SFYDAVKVF----DKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFP 152

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE-- 284
            VL AC    +  LG +IH       +     VF+ NALI MY KCG++  AR +FD   
Sbjct: 153 CVLKACGAFKERRLGCEIHGVAVKCGY--GGFVFVCNALIAMYAKCGDLGGARVLFDSGL 210

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           M   + VSWNS+I+     G+  EAL +FRRMQ +G++ + +T V  L +C    ++++G
Sbjct: 211 MEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIG 270

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           + +H  + K++  TD ++ NAL+ MYA CG+++ A  VF+SM  +D  S+  ++ G+  +
Sbjct: 271 RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQN 330

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-------CKHFLDMSRVYN 457
                A++ F +M   G +PD+V+ + +++A   +  +  G        KH +D      
Sbjct: 331 DMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGID------ 384

Query: 458 LQPQTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA-----CKIHAKVE 511
                 H G  ++D++G+   ++      + MP   D   W  ++       C + A   
Sbjct: 385 ---SNMHIGNSLIDMYGKCCCVKYMGSAFEYMP-EKDLISWTTIIAGYAQNECHLDALNL 440

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE--ALKLRKKMKERKVKKTPGCSLVE 569
           L ++ +E +   +P   G+ +L  +   S+   KE     L+  + +  ++     ++V 
Sbjct: 441 LRKVQLEKM-DVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQN----AIVN 495

Query: 570 VYGEF 574
           VYGE 
Sbjct: 496 VYGEL 500



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 119/258 (46%), Gaps = 9/258 (3%)

Query: 35  KSVGQLKQFHAFIIKTGSP----QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFII 90
           KS   +K+ H +++K G      Q+    +Y ++  +     +         V   + I 
Sbjct: 467 KSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMIT 526

Query: 91  QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
            C+ N   +EA+ L+  ++   + P+  TL  VL A     SL+ G+++H + ++     
Sbjct: 527 CCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFL 586

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
              + N+L+ +YA CG ++    +F++ +    QRDL+ WT++I A        +AI  F
Sbjct: 587 EGLIANSLVDMYARCGTMENARNIFNYVK----QRDLILWTSMINANGMHGCGKDAIDLF 642

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             M   N+ PD +  + +L ACS  G +  G K H  I  N + L P    +  L+D+  
Sbjct: 643 SKMTDENVLPDHITFLALLYACSHSGLVVEG-KQHFEIMKNEYKLEPWPEHYACLVDLLA 701

Query: 271 KCGNIPSARKVFDEMPVK 288
           +  ++  A      MP++
Sbjct: 702 RSNSLEEAYHFVRNMPIE 719


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 176/502 (35%), Positives = 291/502 (57%), Gaps = 8/502 (1%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           M ++GL  N      VL  C + +++R GQ+VHA+ +KT  L  VY+   L+  Y  C  
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDS 108

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           ++    +F        +R++VSWT +I AY +  Y ++A+  F  M ++   P+      
Sbjct: 109 LRDARHVFDV----MPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFAT 164

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL++C       LG +IH +I     N    V++ ++L+DMY K G I  AR +F  +P 
Sbjct: 165 VLTSCIGSSGFVLGRQIHSHIIK--LNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPE 222

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           ++VVS  ++I+G    G  +EAL++FRR+Q  G++ +  T   VL + + +  L+ GK V
Sbjct: 223 RDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQV 282

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H +L ++ + +   + N+L+DMY+KCG +  A  +F ++  R V S+ AM+VG + HG+ 
Sbjct: 283 HNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEG 342

Query: 408 WKALDIFSEM-SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM-SRVYNLQPQTEHY 465
            + L++F+ M  +  ++PD VT + VLS CSH GL ++G   F DM S   ++QP ++HY
Sbjct: 343 REVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHY 402

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
           GC+VD+ GRAG +  A + +K MP  P A +WG LLGAC +H+ +++ E V   L++ EP
Sbjct: 403 GCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEP 462

Query: 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585
           E  G Y++++N+Y+S  RW++   LR  M ++ V K PG S +E+    + F   D SHP
Sbjct: 463 ENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHP 522

Query: 586 KTLEIYKLLDEIMHQSKNHGYI 607
           +  E+   + E+  + K  GY+
Sbjct: 523 RREEVSAKVQELSARFKEAGYV 544



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 157/290 (54%), Gaps = 9/290 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A++L+ +ML  G  PN +T   VL +C  S    +G+Q+H++ +K    ++VYV ++L+
Sbjct: 142 QALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLL 201

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA  G I     +F        +RD+VS T +I  Y ++    EA+  F  + +  ++
Sbjct: 202 DMYAKDGKIHEARGIFQC----LPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQ 257

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            + +    VL+A S L  L  G ++H ++  +   +   V + N+LIDMY KCGN+  AR
Sbjct: 258 SNYVTYTSVLTALSGLAALDHGKQVHNHLLRS--EVPSYVVLQNSLIDMYSKCGNLTYAR 315

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANI 338
           ++FD +  + V+SWN+M+ G +  G+ +E L++F  M     +KPD  T++ VL+ C++ 
Sbjct: 316 RIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHG 375

Query: 339 GWLELGKWVHTYLDKNHINT--DGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           G  + G  +   +    I+   D      +VDM  + GR++ AF   + M
Sbjct: 376 GLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKM 425


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 184/491 (37%), Positives = 281/491 (57%), Gaps = 11/491 (2%)

Query: 115 PNT-YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
           P T Y    +L++C  S++L  G+Q+HA      +  N  +   L+ LYAV   +     
Sbjct: 44  PTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARN 103

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
           LF        +++L  W  LI+ Y        AI+ +  M    LRPD   L  VL ACS
Sbjct: 104 LFD----KIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACS 159

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
            L  +  G  IH Y+  + +    D+F+  ALIDMY KCG +  A +VFD++ V++ V W
Sbjct: 160 ALSAIGEGRSIHEYVIKSGWE--RDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLW 217

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           NSM+A     G   E++ + R M   G++P + TLV V++S A++  L  G+ +H +  +
Sbjct: 218 NSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWR 277

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
           +   ++  +  AL+DMYAKCG +  A  +F  ++ + V S+ A+I G A+HG A  ALD+
Sbjct: 278 HGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDL 337

Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473
           F +M +    PD +TFVGVL+ACS   L++EG   +  M R Y + P  +HY CM+DL G
Sbjct: 338 FDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLG 396

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
             G + EA DLI++M + PD+ VWGALL +CKIH  VELAE+ +E L+  EP+  G Y++
Sbjct: 397 HCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVI 456

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY-- 591
           + N+Y+   +W+   KLR+ M ++++KK   CS +EV  + Y F  GD SH  +  IY  
Sbjct: 457 LANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAE 516

Query: 592 -KLLDEIMHQS 601
            K L+ +MH++
Sbjct: 517 LKRLEGLMHEA 527



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/402 (29%), Positives = 210/402 (52%), Gaps = 20/402 (4%)

Query: 34  SKSVGQLKQFHAFIIKTGSPQHQ---TQILYDKIIS---LSRGNEIENLSLQNPQVYLYN 87
           SK++   KQ HA     G   +Q   T++++   +S   L+  N  + +  QN  ++L+N
Sbjct: 60  SKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQN--LFLWN 117

Query: 88  FIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
            +I+  +   P + AI LY +ML  GL P+ +TLP+VLKAC    ++  G+ +H Y +K+
Sbjct: 118 VLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKS 177

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
               +++V   L+ +YA CG +    ++F         RD V W +++ AY +  +P E+
Sbjct: 178 GWERDLFVGAALIDMYAKCGCVMDAGRVF----DKIVVRDAVLWNSMLAAYAQNGHPDES 233

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           I    +M    +RP    LV V+S+ + +  L  G +IH +   + F  +  V    ALI
Sbjct: 234 ISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKV--KTALI 291

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           DMY KCG++  A  +F+ +  K VVSWN++I G    G    ALD+F +M+    +PD  
Sbjct: 292 DMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHI 350

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRS 385
           T V VL +C+    L+ G+ ++  + +++  T        ++D+   CG++D+A+ + R+
Sbjct: 351 TFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRN 410

Query: 386 MKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           M  + D   + A++    IHG    A     ++  + +EPD+
Sbjct: 411 MSVKPDSGVWGALLNSCKIHGNVELAELALEKL--IELEPDD 450


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 197/577 (34%), Positives = 322/577 (55%), Gaps = 21/577 (3%)

Query: 41  KQFHAFIIKTGSPQHQTQI--------LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQC 92
           K+ HA ++K+    H  ++        +Y +   +     I  L + N  V  +N +I+ 
Sbjct: 284 KEIHAAVLKS---THSFEVYVCNALIAMYARCGKMLEAGRILRL-MNNADVVTWNSLIKG 339

Query: 93  -LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
            + N    EA+  + +M+  G  P+  +L  V+ A  +  +L  G ++HAY +K    SN
Sbjct: 340 YVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSN 399

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
           + V NTL+ +Y+ C L   + + F        ++DL+SWTT+I  Y   D   EA+  F 
Sbjct: 400 LLVGNTLIDMYSKCNLTCYMGRAFLMMH----EKDLISWTTIIAGYALNDCHVEALQLFR 455

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
           D+ +  +  D M+L  +L ACS L  + +  +IH +I         D  I N L+D+Y K
Sbjct: 456 DVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGL---IDTVIQNELVDVYGK 512

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           C N+  A +VF+ +  K+VVSW SMI+     G   EA+++FRRM   GL  D   L+C+
Sbjct: 513 CRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCI 572

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L++ A++  L+ G+ +H YL +     +G I  A+VDMYA CG +  A  VF  ++ + +
Sbjct: 573 LSAAASLSALKKGREIHGYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGL 632

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
             YT+MI    +HG    ++++F++M    + PD ++F+ +L ACSHAGL++EG +    
Sbjct: 633 LQYTSMINAYGMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKI 692

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           M   Y L+P  EHY C+VD+ GRA  + EA + +K M   P   VW ALL AC+ H++ E
Sbjct: 693 MELEYKLEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTTEVWCALLAACRSHSEKE 752

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           + EI  + L+  EP+  G  +L++N+++ + RW +  K+R KMK   ++K PGCS +E+ 
Sbjct: 753 IGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMD 812

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQ-SKNHGYI 607
           G+ ++F   DKSHP+T EIY+ L E+  +  +  GY+
Sbjct: 813 GKVHKFTARDKSHPETKEIYEKLSEVTRKLERESGYL 849



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 186/361 (51%), Gaps = 6/361 (1%)

Query: 78  LQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +++   + +N +I   +SN  P  A+ +YR M ++G+  + Y+ P +LKAC + + +R G
Sbjct: 122 MRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKLRDIRSG 181

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            ++H   +K    S  ++ N L+ +YA    + A  +LF      Q + D V W +++ +
Sbjct: 182 TELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLF---DASQEKGDAVLWNSILSS 238

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y       E +  F +M       +   +V  L+AC       LG +IH  +  +  +  
Sbjct: 239 YSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTHSF- 297

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            +V++ NALI MY +CG +  A ++   M   +VV+WNS+I G      +KEAL  F  M
Sbjct: 298 -EVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCDM 356

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
              G KPD+ +L  V+ +   +  L  G  +H Y+ K+  +++  +GN L+DMY+KC   
Sbjct: 357 IAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLT 416

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
                 F  M  +D+ S+T +I G A++    +AL +F ++++  +E DE+    +L AC
Sbjct: 417 CYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRAC 476

Query: 437 S 437
           S
Sbjct: 477 S 477



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 146/276 (52%), Gaps = 5/276 (1%)

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           L  +CG  +A+ +   F +     R   +W  LI AYV    P  A+  + +M    +  
Sbjct: 103 LLELCGKSRALSQEKVFDE--MRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPL 160

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D     ++L AC KL D+  G ++H  +    FN +   FI NAL+ MY K  ++ +A++
Sbjct: 161 DLYSFPVLLKACGKLRDIRSGTELHCMLVKLGFNSTG--FIVNALVSMYAKTDHLSAAKR 218

Query: 281 VFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +FD    K + V WNS+++  +  G+  E L +FR MQ  G   + +T+V  L +C    
Sbjct: 219 LFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFS 278

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
           + +LGK +H  + K+  + + ++ NAL+ MYA+CG++ +A  + R M   DV ++ ++I 
Sbjct: 279 YAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIK 338

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           G   +    +AL  F +M   G +PDEV+   V++A
Sbjct: 339 GYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAA 374


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 183/521 (35%), Positives = 293/521 (56%), Gaps = 10/521 (1%)

Query: 89  IIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           I+QC+S++   L   A   E     L P + ++  ++  C    SLR  +Q+ AY++KT 
Sbjct: 6   ILQCVSHSLTKLNTEAPRHEPNTAALEPPSSSILSLIPKC---TSLRELKQIQAYTIKTH 62

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAV-HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
             +N  V   L+        I ++ H    F + PQ   D+V + T+ + Y + D P  A
Sbjct: 63  Q-NNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQP--DIVLFNTMARGYARFDDPLRA 119

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           IL    +  + L PD      +L AC++L  L  G ++H         +  ++++   LI
Sbjct: 120 ILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVK--LGVGDNMYVCPTLI 177

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           +MY  C ++ +AR+VFD++    VV++N++I       +  EAL +FR +Q  GLKP D 
Sbjct: 178 NMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDV 237

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T++  L+SCA +G L+LG+W+H Y+ KN  +    +  AL+DMYAKCG +D A  VF+ M
Sbjct: 238 TMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDM 297

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             RD  +++AMIV  A HG   +A+ +  EM +  ++PDE+TF+G+L ACSH GLVEEG 
Sbjct: 298 PRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGY 357

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           ++F  M+  Y + P  +HYGCM+DL GRAG + EA   I  +P+ P   +W  LL +C  
Sbjct: 358 EYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSS 417

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H  VE+A++V++ +   +    G Y++++N+ +   RW +   LRK M ++   K PGCS
Sbjct: 418 HGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCS 477

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +EV    +EF  GD  H  +  ++  LDE++ + K  GY+
Sbjct: 478 SIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYV 518


>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
          Length = 530

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/506 (34%), Positives = 277/506 (54%), Gaps = 46/506 (9%)

Query: 137 QQVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
             +H   +K  LL    ++   L+  YA  G      +LF        ++ LV  T + +
Sbjct: 29  SSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFD----EMPEQGLVPRTAMAR 84

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL----GIKIHRYITDN 251
           A+V      +AI  F DM    + PD + + + L AC   G  +     G  IH  +  +
Sbjct: 85  AHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTS 144

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK----------------------- 288
              + PDVF+   LI +Y + G +P +R+VFD+MP +                       
Sbjct: 145 --GIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYE 202

Query: 289 --------NVVSWNSMIAGLTHRGQFKEALDIFRRM---QGLGLKPDDFTLVCVLNSCAN 337
                   +VVSWN+++AG    G+ +EAL +FR+M       + P+  T+  +L +CA 
Sbjct: 203 MFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAG 262

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF-RSMKCRDVYSYTA 396
            G LE G WVH Y+++N +N DG++   L+DMY KCG ID A  VF ++ + +D++S+T 
Sbjct: 263 AGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTT 322

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I GLA+HG+   AL +F  M   GI PD+VT VGVL+AC+H GLV+EG  +F  M   +
Sbjct: 323 VICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKF 382

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            + P+ EHYGCM+DL GR G ++EA  +I++MP+ P+  +WGA L ACK+H  +EL +I 
Sbjct: 383 RITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIA 442

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            E L R +P+     ++++++Y+    W    + R++M   +VKKTPGCS +E+ GE +E
Sbjct: 443 AEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEVHE 502

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSK 602
           F  G   HP+  EI  +L ++  Q+ 
Sbjct: 503 FVAGGSQHPQYAEICSVLQDVEAQTN 528



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 180/371 (48%), Gaps = 41/371 (11%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV----GQQVHAYSMKTAL 148
           +++    +AIA++ +M+  G+ P+   +   L AC  + S       G+ +HA  + + +
Sbjct: 87  VASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGI 146

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLF----------------HFRQHPQA--------- 183
           + +V+V   L+R+Y   G +    ++F                 + +H +          
Sbjct: 147 VPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLA 206

Query: 184 --QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN---LRPDGMILVIVLSACSKLGDL 238
             +RD+VSW T++  Y       EA+  F  M   +   + P+   +  +L AC+  G L
Sbjct: 207 MPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCL 266

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMI 297
             GI +H YI  N  N   D ++   LIDMY KCG+I +A +VF++ P  K++ SW ++I
Sbjct: 267 ETGIWVHAYIERNRMN--DDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVI 324

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHI 356
            GL   G+  +AL +F  MQ  G+ PDD TLV VLN+CA+ G ++ G  + ++   K  I
Sbjct: 325 CGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRI 384

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFS 415
                    ++D+  + GR+ +A+ + R+M    +   + A +    +HG          
Sbjct: 385 TPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAE 444

Query: 416 EMSQVGIEPDE 426
           E+++  ++PD+
Sbjct: 445 ELTR--LDPDD 453


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 178/497 (35%), Positives = 280/497 (56%), Gaps = 33/497 (6%)

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           Q+H + +  AL  +    +  +      GL      +F  + HP    DL  + T I+A 
Sbjct: 42  QIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHP----DLRLYNTAIKAL 97

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS- 256
            K   P  AI  +  +    LRPD   +  VL A  KL  + +G +IH     +  ++  
Sbjct: 98  SKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDV 157

Query: 257 ----------------------------PDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
                                        DV + NA++  Y+K G + SARKVF+EMP +
Sbjct: 158 NVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQR 217

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           NV+SW ++IAG     +  EA+++FR+MQ   ++PD+  ++ VL++CA++G LELG+W+H
Sbjct: 218 NVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIH 277

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
            Y++K+ +     + NAL+DMYAK G I +A  VF +MK + V +++ +I  LA+HG   
Sbjct: 278 NYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGG 337

Query: 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCM 468
           +A+D+F  M +  + P+EVTFV +LSACSH G+V+ G  +F  M  +Y ++P+ EHYGCM
Sbjct: 338 EAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCM 397

Query: 469 VDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
           +DL  RAG ++EA  L+  MP   +A +WG+LL A   H   ELA++ +++L + EP   
Sbjct: 398 IDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNS 457

Query: 529 GAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTL 588
           G Y+L++N Y++  +W E+  +RK M+   VKK PG S++E+    YEF  GD S  +  
Sbjct: 458 GNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEINNIVYEFLAGDMSDSQVH 517

Query: 589 EIYKLLDEIMHQSKNHG 605
           EIY +L +I+ Q K  G
Sbjct: 518 EIYHVLCKIILQLKMAG 534



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 119/353 (33%), Positives = 195/353 (55%), Gaps = 41/353 (11%)

Query: 80  NPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +P + LYN  I+ LS  ++P+ AI LY  + I GL P++Y++P VLKA  +  ++ VG+Q
Sbjct: 84  HPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQ 143

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF--------------------- 177
           +H  ++ +AL  +V V  +L+++Y+ CG +    KLF F                     
Sbjct: 144 IHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGE 203

Query: 178 ----RQ--HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
               R+  +   QR+++SWTTLI  Y + + P EAI  F  M    + PD + ++ VLSA
Sbjct: 204 LKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSA 263

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           C+ LG L LG  IH YI  +   L   V ++NALIDMY K GNI  A +VF+ M  K+V+
Sbjct: 264 CADLGALELGEWIHNYIEKH--GLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVI 321

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           +W+++IA L   G   EA+D+F RM+   ++P++ T V +L++C+++G +++G++   Y 
Sbjct: 322 TWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRY---YF 378

Query: 352 DKNH----INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           D+      I         ++D+ A+ G + +A  +   M     +   AMI G
Sbjct: 379 DQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMP----FEANAMIWG 427



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 124/248 (50%), Gaps = 13/248 (5%)

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTL 120
           Y K+  L    ++ N   Q   +     I        P EAI L+R+M ++ + P+   +
Sbjct: 198 YVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAM 257

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
             VL AC    +L +G+ +H Y  K  L   V ++N L+ +YA  G I+   ++F   + 
Sbjct: 258 LAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMK- 316

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
              Q+ +++W+T+I A        EAI  F  M +A +RP+ +  V +LSACS +G + +
Sbjct: 317 ---QKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDV 373

Query: 241 GIKIHRYITD---NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSM 296
           G    RY  D   + + + P +  +  +ID+  + G +  A+K+  +MP + N + W S+
Sbjct: 374 G----RYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSL 429

Query: 297 IAGL-THR 303
           +A   THR
Sbjct: 430 LAASNTHR 437


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 197/580 (33%), Positives = 315/580 (54%), Gaps = 17/580 (2%)

Query: 37  VGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS------LQNPQVYLYNFII 90
           VG  +Q HA  +K  S +    I+ + ++++   N + +        +++  +  +  II
Sbjct: 168 VGTGRQVHAHALK--SERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSII 225

Query: 91  QCLSNAN-PLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
              +     +EA+ ++R+M+++G   PN +      +AC    S   G+Q+H  S+K  L
Sbjct: 226 AGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRL 285

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             ++YV  +L  +YA    + +    F+  + P    DLVSW +++ AY      +EA++
Sbjct: 286 DRDLYVGCSLSDMYARFKNLDSARVAFYRIEAP----DLVSWNSIVNAYSVEGLLSEALV 341

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F +M  + LRPDG+ +  +L AC     L  G  IH Y+      L  DV + N+L+ M
Sbjct: 342 LFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVK--LGLDGDVSVCNSLLSM 399

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y +C ++ SA  VF E+  ++VV+WNS++         +E L +F  +       D  +L
Sbjct: 400 YARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISL 459

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM-K 387
             VL++ A +G+ E+ K VH Y  K  +  D  + N L+D YAKCG +D A  +F  M  
Sbjct: 460 NNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGN 519

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
            RDV+S++++IVG A  G A +ALD+FS M  +GI P+ VTF+GVL+ACS  G V EGC 
Sbjct: 520 NRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCY 579

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           ++  M   Y + P  EH  C+VDL  RAG + EA + I  MP  PD  +W  LL A K+H
Sbjct: 580 YYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMH 639

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
             +E+ +   E ++  +P    AY+L+ NIY++   W E  +L+K M+   VKK+PG S 
Sbjct: 640 NDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSW 699

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           V++ GE   F   D+SHP++ EIY +L+ I  +    GY+
Sbjct: 700 VKLKGELKVFIVEDRSHPESEEIYAMLELIGMEMIKAGYV 739



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 228/481 (47%), Gaps = 22/481 (4%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQTQI------------LYDKIISLSRGNEI-ENLSLQNP 81
           +S+ Q ++ H  ++ + S     Q+            +Y +  +     ++ + +  +NP
Sbjct: 58  RSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVFDEMPARNP 117

Query: 82  QVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
            V   + I   + N    +A+ L+  ML  G   + + L   ++AC +   +  G+QVHA
Sbjct: 118 -VSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHA 176

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           +++K+   S++ V N L+ +Y+  GL+     LF   +     +DL+SW ++I  + +  
Sbjct: 177 HALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIK----DKDLISWGSIIAGFAQQG 232

Query: 202 YPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
           +  EA+  F  M  + +  P+         AC  +G    G +IH       + L  D++
Sbjct: 233 FEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIK--YRLDRDLY 290

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           +  +L DMY +  N+ SAR  F  +   ++VSWNS++   +  G   EAL +F  M+  G
Sbjct: 291 VGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSG 350

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           L+PD  T+  +L +C     L  G+ +H+YL K  ++ D  + N+L+ MYA+C  +  A 
Sbjct: 351 LRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAM 410

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  +K +DV ++ +++   A H    + L +FS +++     D ++   VLSA +  G
Sbjct: 411 DVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELG 470

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
             E   K     +    L         ++D + + G + +A+ L + M    D F W +L
Sbjct: 471 YFEM-VKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSL 529

Query: 501 L 501
           +
Sbjct: 530 I 530



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 174/373 (46%), Gaps = 42/373 (11%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPD------VFIHNALIDMYLKCGNIPSARKV 281
           ++SACS+L  L  G ++HR++  +  + SPD        + N LI MY +C    SAR+V
Sbjct: 50  LVSACSRLRSLPQGRRVHRHLVASSSS-SPDAQLAGNTVLGNHLITMYGRCAAPDSARQV 108

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           FDEMP +N VSW S+IA     G+  +AL +F  M   G   D F L   + +C  +G +
Sbjct: 109 FDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDV 168

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
             G+ VH +  K+   +D  + NALV MY+K G +D  F +F  +K +D+ S+ ++I G 
Sbjct: 169 GTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGF 228

Query: 402 AIHGKAWKALDIFSEMSQVGI-EPDEVTFVGVLSACSHAGLVEEG-------CKHFLDM- 452
           A  G   +AL +F +M   G   P+E  F     AC   G  E G        K+ LD  
Sbjct: 229 AQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRD 288

Query: 453 -----------SRVYNLQ-----------PQTEHYGCMVDLFGRAGLIREALDLIKSM-- 488
                      +R  NL            P    +  +V+ +   GL+ EAL L   M  
Sbjct: 289 LYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRD 348

Query: 489 -PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI-LMTNIYSSKNRWKE 546
             L PD      LL AC     +    ++   LV+   +GD +    + ++Y+  +    
Sbjct: 349 SGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSS 408

Query: 547 ALKLRKKMKERKV 559
           A+ +  ++K++ V
Sbjct: 409 AMDVFHEIKDQDV 421


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 190/586 (32%), Positives = 319/586 (54%), Gaps = 20/586 (3%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYN 87
           SSK + Q +  HA I++T   +    +    I   +R  ++E        +    +  +N
Sbjct: 70  SSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWN 129

Query: 88  FIIQCLS-NANPLEAIALYREMLIK---GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
            +I   S N +   A+ +Y++M+ K   G+ P+  T    L AC     +  G+++ A +
Sbjct: 130 ALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEART 189

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           + +   S+  V N L+ +Y+ CG +++  K+F   ++    RD+++W T+I  Y K    
Sbjct: 190 VASGYASDSIVQNALINMYSKCGSLESARKVFDRLKN----RDVIAWNTMISGYAKQGAA 245

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
           T+A+  F  M   + +P+ +  + +L+AC+ L DL  G  IHR + ++ +    D+ I N
Sbjct: 246 TQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYE--SDLVIGN 303

Query: 264 ALIDMYLKCGN-IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
            L++MY KC + +  AR+VF+ +  ++V++WN +I      GQ K+ALDIF++MQ   + 
Sbjct: 304 VLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVA 363

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P++ TL  VL++CA +G    GK VH  +       D  + N+L++MY +CG +D   GV
Sbjct: 364 PNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGV 423

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F +++ + + S++ +I   A HG +   L+ F E+ Q G+  D+VT V  LSACSH G++
Sbjct: 424 FAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGML 483

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           +EG + FL M   + L P   H+ CMVDL  RAG +  A +LI  MP +PDA  W +LL 
Sbjct: 484 KEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLS 543

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYI-LMTNIYSSKNRWKEALKLRKKMKERKVKK 561
            CK+H   + A  V + L   E E + + + L++N+Y+   RW +   +RK    R  +K
Sbjct: 544 GCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDD---VRKTRNRRAARK 600

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            PGCS +E+    +EF  GDKSHP+   I   +  +  Q K+ GY+
Sbjct: 601 NPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYV 646



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 208/375 (55%), Gaps = 12/375 (3%)

Query: 77  SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           ++++P    +  I+   + N +  EA+  YR M+++GL P+       +  C  S+ L+ 
Sbjct: 17  AIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQ 76

Query: 136 GQQVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
           GQ +HA  ++T LL  ++ +   L+ +YA C  ++   K F        ++ LV+W  LI
Sbjct: 77  GQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTF----DEMGKKTLVTWNALI 132

Query: 195 QAYVKMDYPTEAILSFFDMCQAN---LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
             Y +      A+  + DM   +   ++PD +     L ACS +GD+S G +I      +
Sbjct: 133 AGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVAS 192

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
            +  + D  + NALI+MY KCG++ SARKVFD +  ++V++WN+MI+G   +G   +AL+
Sbjct: 193 GY--ASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALE 250

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           +F+RM     KP+  T + +L +C N+  LE G+ +H  + ++   +D  IGN L++MY 
Sbjct: 251 LFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYT 310

Query: 372 KC-GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
           KC   +++A  VF  ++ RDV ++  +IV    +G+A  ALDIF +M    + P+E+T  
Sbjct: 311 KCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLS 370

Query: 431 GVLSACSHAGLVEEG 445
            VLSAC+  G   +G
Sbjct: 371 NVLSACAVLGAKRQG 385



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 190/383 (49%), Gaps = 42/383 (10%)

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y  CG +     +FH  +HP +    VSWT ++ A+ +  +  EA+  +  M    LRP
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNS----VSWTLIVAAFARNGHYREALGYYRRMVLEGLRP 56

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           DG + V+ +  CS   DL  G  +H  I +    L  D+ +  ALI MY +C ++  ARK
Sbjct: 57  DGAMFVVAIGVCSSSKDLKQGQLLHAMILETQL-LEFDIILGTALITMYARCRDLELARK 115

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM---QGLGLKPDDFTLVCVLNSCAN 337
            FDEM  K +V+WN++IAG +  G  + AL I++ M      G+KPD  T    L +C+ 
Sbjct: 116 TFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSV 175

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +G +  G+ +      +   +D  + NAL++MY+KCG ++ A  VF  +K RDV ++  M
Sbjct: 176 VGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTM 235

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG------------ 445
           I G A  G A +AL++F  M     +P+ VTF+G+L+AC++   +E+G            
Sbjct: 236 ISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGY 295

Query: 446 ----------------CKHFLDMSRVYNLQPQTEH---YGCMVDLFGRAGLIREALDLIK 486
                           C   L+ +R    + +T     +  ++  + + G  ++ALD+ K
Sbjct: 296 ESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFK 355

Query: 487 SMPL---VPDAFVWGALLGACKI 506
            M L    P+      +L AC +
Sbjct: 356 QMQLENVAPNEITLSNVLSACAV 378



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 126/265 (47%), Gaps = 15/265 (5%)

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY KCG++  A  VF  +   N VSW  ++A     G ++EAL  +RRM   GL+PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 328 LVCVLNSCANIGWLELGKWVHTY-LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
            V  +  C++   L+ G+ +H   L+   +  D  +G AL+ MYA+C  ++ A   F  M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEM---SQVGIEPDEVTFVGVLSACSHAGLVE 443
             + + ++ A+I G + +G    AL I+ +M   S  G++PD +TF   L ACS  G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI---REALDLIKSMPLVPDAFVWGAL 500
           +G +     +        +     +++++ + G +   R+  D +K+     D   W  +
Sbjct: 181 QG-REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR----DVIAWNTM 235

Query: 501 LGACKIHAKVELAEIVMENLVRFEP 525
           +     +AK   A   +E   R  P
Sbjct: 236 ISG---YAKQGAATQALELFQRMGP 257


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 181/507 (35%), Positives = 282/507 (55%), Gaps = 8/507 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A  ++ EML   + PN +T+  VLKAC   ++L  G   H+ + K  +  +VYV N L+
Sbjct: 92  QAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALL 151

Query: 160 RLYAV-CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
            +YA  C  +     +F+        +  VSWTTLI  +         +L+F  M   ++
Sbjct: 152 DMYAASCATMDDALSVFN----DIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDV 207

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            P+     I   AC+ +   S G +IH  +T   + L  D  + N+++DMY +C  +  A
Sbjct: 208 GPNSFSFSIAARACASISSYSCGKQIHAAVT--KYGLHCDAPVMNSILDMYCRCNYLCDA 265

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           ++ F E+  KN+++WN++IAG   R    E+L +F +M   G KP+ FT   +  +CAN+
Sbjct: 266 KRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANL 324

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             L  G+ VH  + +   + +  + N+L+DMYAKCG I  +  +F  M  RD+ S+T M+
Sbjct: 325 AVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMM 384

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
           +G   HG   +A+ +F EM Q GI+PD + F+GVL  CSHAGLV++G K+F  M   YN+
Sbjct: 385 IGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNI 444

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P  E Y C+VDL GRAG + EA  L+++MP  PD  VWGALLGACK +    L  +  +
Sbjct: 445 NPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQ 504

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            ++   P   G Y+L++ IY+++ +W E  K+RK MK    KK  G S +E+  E Y F 
Sbjct: 505 RVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRNEVYSFV 564

Query: 579 KGDKSHPKTLEIYKLLDEIMHQSKNHG 605
            G K  P    ++K++D ++   K+ G
Sbjct: 565 VGAKMGPHIEWVHKVIDVLIWHMKDDG 591



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 138/274 (50%), Gaps = 16/274 (5%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENL-----SLQNPQVYLY 86
           SS S G  KQ HA + K G   H    + + I+ +  R N + +       L    +  +
Sbjct: 225 SSYSCG--KQIHAAVTKYG--LHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITW 280

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           N +I     ++  E+++L+ +M  +G  PN +T   +  AC     L  GQQVH   ++ 
Sbjct: 281 NTLIAGYERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRR 340

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
               NV + N+L+ +YA CG I   HKLF         RDLVSWTT++  Y    Y  EA
Sbjct: 341 GFDKNVALINSLIDMYAKCGSISDSHKLF----CDMPGRDLVSWTTMMIGYGAHGYGKEA 396

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F +M Q+ ++PD ++ + VL  CS  G +  G+K  R + ++ +N++PD  I+  ++
Sbjct: 397 VKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLED-YNINPDQEIYRCVV 455

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVS-WNSMIAG 299
           D+  + G +  A ++ + MP +   S W +++  
Sbjct: 456 DLLGRAGRVEEAFQLVENMPFEPDESVWGALLGA 489



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 157/379 (41%), Gaps = 49/379 (12%)

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           P V+  N LI  Y   G    A  +F+E+P ++VV+W +MI G T    + +A  +F  M
Sbjct: 42  PSVWATN-LIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEM 100

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY-AKCGR 375
               ++P+ FT+  VL +C  +  L  G   H+   K+ I+   ++ NAL+DMY A C  
Sbjct: 101 LRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCAT 160

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           +D A  VF  +  +   S+T +I G    G  +  L  F +M    + P+  +F     A
Sbjct: 161 MDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARA 220

Query: 436 CS-----------HAGLVEEG-----------------CKHFLDMSRVYN--LQPQTEHY 465
           C+           HA + + G                 C +  D  R +    +     +
Sbjct: 221 CASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITW 280

Query: 466 GCMVDLFGRAGLIREALDL---IKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
             ++  + R+    E+L L   + S    P+ F + ++  AC   A +   + V   +VR
Sbjct: 281 NTLIAGYERSD-SSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVR 339

Query: 523 FEPEGDGAYI-LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581
              + + A I  + ++Y+      ++ KL   M        PG  LV     +     G 
Sbjct: 340 RGFDKNVALINSLIDMYAKCGSISDSHKLFCDM--------PGRDLV----SWTTMMIGY 387

Query: 582 KSHPKTLEIYKLLDEIMHQ 600
            +H    E  KL DE++  
Sbjct: 388 GAHGYGKEAVKLFDEMVQS 406


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/511 (35%), Positives = 304/511 (59%), Gaps = 8/511 (1%)

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTL 120
           Y    S+   +++     +   V   + I  C    +  + + +  EM  +G++PN  T+
Sbjct: 166 YGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTI 225

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
             +L AC Q+Q++  G+ V+    K  + ++V + N L+ +Y  CG +     L  F+  
Sbjct: 226 ISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLS--DALEAFQAM 283

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
           P   R   SW TLI  +V+     EA+  F +M    + PDG+ LV VLSAC++LG+L  
Sbjct: 284 PA--RYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRK 341

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G+ +H YI DN   +  D  + N+LI+MY KCG++ +A +VF  M  K+VVSW  M+ G 
Sbjct: 342 GMHVHSYIKDN--GICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGY 399

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
               QF  A ++F  M+   +   +  LV +L++C+ +G L+ G+ +H+Y+++ ++  D 
Sbjct: 400 VKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDL 459

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            + +ALVDMYAKCG ID A  +FR M+ +   S+ AMI GLA +G   +A+++F +M ++
Sbjct: 460 CLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLEL 519

Query: 421 -GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
              +PD +T   VL AC+H G+V+EG ++F  MS +  + P TEHYGC+VDL GRAG++ 
Sbjct: 520 QDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSL-GVVPDTEHYGCIVDLLGRAGMLD 578

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA   IK MP+ P+  +WG+LL AC++H +++L +++ +++V   P   G ++L++N+++
Sbjct: 579 EAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHA 638

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
            +++W +   +R  M  R ++KTPG S V+V
Sbjct: 639 EESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/458 (30%), Positives = 233/458 (50%), Gaps = 15/458 (3%)

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV- 135
           +  P  +++N +I+  S+   P +A+A++REM  +G+ P+ YT+  V+ A      L+  
Sbjct: 78  MAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWR 137

Query: 136 --GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
             G  +HA   +    S+V+V + L+  Y     ++   K+F        +RD+VSWT++
Sbjct: 138 SNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFE----EMYERDVVSWTSM 193

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I A  +  +  + +    +M    + P+ + ++ +LSAC +   +  G  ++  +    F
Sbjct: 194 ISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQV--GKF 251

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            +  DV I NALI MY KCG +  A + F  MP +   SWN++I G     + KEAL IF
Sbjct: 252 GIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIF 311

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             M   G+ PD  TLV VL++CA +G L  G  VH+Y+  N I  D  + N+L++MYAKC
Sbjct: 312 EEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKC 371

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G +  A  VF++M  +DV S+T M+ G     +   A ++F EM    +   E+  V +L
Sbjct: 372 GDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLL 431

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SACS  G +++G +         N+         +VD++ + G I  A ++ + M     
Sbjct: 432 SACSQLGALDKG-REIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQH-KQ 489

Query: 494 AFVWGALLG--ACKIHAKVELAEIVMENLVRFEPEGDG 529
              W A++G  A   + K E  E+  + L   +P+ DG
Sbjct: 490 TLSWNAMIGGLASNGYGK-EAVELFDQMLELQDPKPDG 526



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 168/363 (46%), Gaps = 22/363 (6%)

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           +F    +  RP    L+  L AC+    L+   ++H  +   H  L+ D F+   LI + 
Sbjct: 5   YFHGNASQARPIRHHLLAYLDACASRAHLA---ELHGRLVRAH--LTSDSFVAGRLIALL 59

Query: 270 LKCG---NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
                  ++  ARKVFD M   N   WN MI G +     ++AL +FR M+  G+ PD++
Sbjct: 60  ASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNY 119

Query: 327 TL---VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           T+   V    + A + W   G  +H  + +    +D F+ + LV+ Y     +++A  VF
Sbjct: 120 TMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVF 179

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             M  RDV S+T+MI   A  G   K L + SEM   GI P++VT + +LSAC     V+
Sbjct: 180 EEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVD 239

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL-G 502
           EG +   +    + ++   +    ++ ++ + G + +AL+  ++MP       W  L+ G
Sbjct: 240 EG-RWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMP-ARYTKSWNTLIDG 297

Query: 503 ACKIHAKVELAEIVMENLVR-FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
             + H   E   I  E L+    P+G    I + ++ S+  +  E   LRK M      K
Sbjct: 298 FVQNHEHKEALRIFEEMLLHGVTPDG----ITLVSVLSACAQLGE---LRKGMHVHSYIK 350

Query: 562 TPG 564
             G
Sbjct: 351 DNG 353


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 182/529 (34%), Positives = 301/529 (56%), Gaps = 9/529 (1%)

Query: 81  PQVYLYNFIIQCLS-NANPLEAIALYREMLI-KGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           P V L+  II     N +P  A+A +  M++ + + P+  TL     AC Q     +G+ 
Sbjct: 168 PDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRS 227

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           VH +  +    + + + N+++ LY   G I+    LF  R+ P   +D++SW++++  Y 
Sbjct: 228 VHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLF--REMPY--KDIISWSSMVACYA 283

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
                T A+  F +M    +  + + ++  L AC+   +L  G +IH+   +  F L  D
Sbjct: 284 DNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFEL--D 341

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           + +  AL+DMYLKC +  +A ++F+ MP K+VVSW  + +G    G   ++L +F  M  
Sbjct: 342 ITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLS 401

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G +PD   LV +L + + +G ++    +H ++ K+  + + FIG +L+++YAKC  ID 
Sbjct: 402 NGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDN 461

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS-QVGIEPDEVTFVGVLSACS 437
           A  VF+ ++  DV +++++I     HG+  +AL +  +MS    ++P++VTFV +LSACS
Sbjct: 462 ANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACS 521

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAGL+EEG K F  M   Y L P  EHYG MVDL GR G + +ALD+I +MP+     VW
Sbjct: 522 HAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVW 581

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GALLGAC+IH  +++ E+   NL   +P   G Y L++NIY     W +A KLR  +KE 
Sbjct: 582 GALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKEN 641

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           ++KK  G S+VE+  E + F   D+ H ++ +IY++L ++  + +  GY
Sbjct: 642 RLKKIVGQSMVEIKNEVHSFIASDRFHGESDQIYEMLRKLDARMREEGY 690



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 143/499 (28%), Positives = 249/499 (49%), Gaps = 32/499 (6%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQH-----QTQILYDKIISLSRGNEIENLSLQNP--QV 83
           LE+  S   + Q H+  +K G         +  +LY +  SL   ++   L  + P   V
Sbjct: 11  LETCCSKISITQLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHK---LFEETPCKTV 67

Query: 84  YLYNFIIQC-LSNANPLEAIALYREMLIKGLL---PNTYTLPYVLKACWQSQSLRVGQQV 139
           YL+N +++        +E ++L+ +M    +    P+ YT+   LK+C   Q L +G+ +
Sbjct: 68  YLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMI 127

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           H + +K  + S+++V + L+ LY+ CG +    K+  F ++P+   D+V WT++I  Y +
Sbjct: 128 HGF-LKKKIDSDMFVGSALIELYSKCGQMNDAVKV--FTEYPKP--DVVLWTSIITGYEQ 182

Query: 200 MDYPTEAILSFFD--MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
              P E  L+FF   +    + PD + LV   SAC++L D +LG  +H ++    F+   
Sbjct: 183 NGSP-ELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFD--T 239

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
            + + N+++++Y K G+I  A  +F EMP K+++SW+SM+A     G    AL++F  M 
Sbjct: 240 KLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMI 299

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              ++ +  T++  L +CA+   LE GK +H          D  +  AL+DMY KC   +
Sbjct: 300 DKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPE 359

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A  +F  M  +DV S+  +  G A  G A K+L +F  M   G  PD +  V +L+A S
Sbjct: 360 NAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASS 419

Query: 438 HAGLVEEG-CKH-FLDMSRVYNLQPQTEHYGC-MVDLFGRAGLIREALDLIKSMPLVPDA 494
             G+V++  C H F+  S   N     E  G  +++L+ +   I  A  + K +    D 
Sbjct: 420 ELGIVQQALCLHAFVTKSGFDN----NEFIGASLIELYAKCSSIDNANKVFKGLRHT-DV 474

Query: 495 FVWGALLGACKIHAKVELA 513
             W +++ A   H + E A
Sbjct: 475 VTWSSIIAAYGFHGQGEEA 493



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 189/389 (48%), Gaps = 18/389 (4%)

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           L  +L+ C    S+    Q+H+  +K  L  + +V   L  LYA    +   HKLF   +
Sbjct: 7   LVKLLETCCSKISI---TQLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLF--EE 61

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL----RPDGMILVIVLSACSKL 235
            P   + +  W  L+++Y       E  LS F    A+     RPD   + I L +CS L
Sbjct: 62  TPC--KTVYLWNALLRSYFLEGKWVET-LSLFHQMNADAVTEERPDNYTVSIALKSCSGL 118

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
             L LG  IH ++      +  D+F+ +ALI++Y KCG +  A KVF E P  +VV W S
Sbjct: 119 QKLELGKMIHGFLKKK---IDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTS 175

Query: 296 MIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           +I G    G  + AL  F RM  L  + PD  TLV   ++CA +    LG+ VH ++ + 
Sbjct: 176 IITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRR 235

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
             +T   + N+++++Y K G I  A  +FR M  +D+ S+++M+   A +G    AL++F
Sbjct: 236 GFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLF 295

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           +EM    IE + VT +  L AC+ +  +EEG K    ++  Y  +        ++D++ +
Sbjct: 296 NEMIDKRIELNRVTVISALRACASSSNLEEG-KQIHKLAVNYGFELDITVSTALMDMYLK 354

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGA 503
                 A++L   MP   D   W  L   
Sbjct: 355 CFSPENAIELFNRMP-KKDVVSWAVLFSG 382


>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
          Length = 530

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/506 (34%), Positives = 277/506 (54%), Gaps = 46/506 (9%)

Query: 137 QQVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
             +H   +K  LL    ++   L+  YA  G      +LF        ++ LV  T + +
Sbjct: 29  SSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFD----EMPEQGLVPRTAMAR 84

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL----GIKIHRYITDN 251
           A+V      +AI  F DM    + PD + + + L AC   G  +     G  IH  +  +
Sbjct: 85  AHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTS 144

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK----------------------- 288
              + PDVF+   LI +Y + G +P +R+VFD+MP +                       
Sbjct: 145 --GIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYE 202

Query: 289 --------NVVSWNSMIAGLTHRGQFKEALDIFRRM---QGLGLKPDDFTLVCVLNSCAN 337
                   +VVSWN+++AG    G+ +EAL +FR+M       + P+  T+  +L +CA 
Sbjct: 203 MFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAG 262

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF-RSMKCRDVYSYTA 396
            G LE G WVH Y+++N +N DG++   L+DMY KCG ID A  VF ++ + +D++S+T 
Sbjct: 263 AGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTT 322

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I GLA+HG+   AL +F  M   GI PD+VT VGVL+AC+H GLV+EG  +F  M   +
Sbjct: 323 VICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKF 382

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            + P+ EHYGCM+DL GR G ++EA  +I++MP+ P+  +WGA L ACK+H  +EL +I 
Sbjct: 383 RITPKIEHYGCMIDLLGRIGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIA 442

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            E L R +P+     ++++++Y+    W    + R++M   +VKKTPGCS +E+ GE +E
Sbjct: 443 AEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEVHE 502

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSK 602
           F  G   HP+  EI  +L ++  Q+ 
Sbjct: 503 FVAGGSQHPQYAEICSVLQDVEAQTN 528



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 180/371 (48%), Gaps = 41/371 (11%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV----GQQVHAYSMKTAL 148
           +++    +AIA++ +M+  G+ P+   +   L AC  + S       G+ +HA  + + +
Sbjct: 87  VASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGI 146

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLF----------------HFRQHPQA--------- 183
           + +V+V   L+R+Y   G +    ++F                 + +H +          
Sbjct: 147 VPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLA 206

Query: 184 --QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN---LRPDGMILVIVLSACSKLGDL 238
             +RD+VSW T++  Y       EA+  F  M   +   + P+   +  +L AC+  G L
Sbjct: 207 MPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCL 266

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMI 297
             GI +H YI  N  N   D ++   LIDMY KCG+I +A +VF++ P  K++ SW ++I
Sbjct: 267 ETGIWVHAYIERNRMN--DDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVI 324

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHI 356
            GL   G+  +AL +F  MQ  G+ PDD TLV VLN+CA+ G ++ G  + ++   K  I
Sbjct: 325 CGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRI 384

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFS 415
                    ++D+  + GR+ +A+ + R+M    +   + A +    +HG          
Sbjct: 385 TPKIEHYGCMIDLLGRIGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAE 444

Query: 416 EMSQVGIEPDE 426
           E+++  ++PD+
Sbjct: 445 ELTR--LDPDD 453


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 175/479 (36%), Positives = 281/479 (58%), Gaps = 7/479 (1%)

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
           +S+SL  GQQ+HA+ +K+ L     V + L+  Y+   L     ++F        ++   
Sbjct: 66  RSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFE----ESERKSST 121

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
           +W+++I ++ + + P  AI  F  M   NL PD  I      AC+ LG   +G  +H  +
Sbjct: 122 TWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLV 181

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
               +++  DVF+ ++L+DMY KCG+I  AR VFDEMP +NVVSW+ MI G T  G+ +E
Sbjct: 182 IKTGYDV--DVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEE 239

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           A+ +F+     GL  +DFTL  V+  C +   LELGK +H    K   +  GF+G++L+ 
Sbjct: 240 AMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLIS 299

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           +Y+KCG I+ A+ VF  +  +++  + AM++  A H    +A D+F++M   G+ P+ +T
Sbjct: 300 LYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFIT 359

Query: 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
           F+ VL ACSHAGLVEEG K+F  M + Y ++P T+HY  MVDL GRAG ++EAL +IK M
Sbjct: 360 FLCVLYACSHAGLVEEGKKYFALMKK-YEIEPGTQHYASMVDLLGRAGKLQEALSVIKGM 418

Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548
           P  P   VWGA +  C+IH   +LA    + +        G +++++N Y++  R+++A 
Sbjct: 419 PTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAA 478

Query: 549 KLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K RK +++R VKK  G S +E     ++F  GD+ H +  EIY+ L+++  + +  GY+
Sbjct: 479 KARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYV 537



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/409 (29%), Positives = 192/409 (46%), Gaps = 20/409 (4%)

Query: 3   SPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQ-----HQT 57
           SP    S  +Y  I       LL Q+     S+S+ + +Q HA IIK+G        H  
Sbjct: 44  SPNRFCSEKKYGHICDL----LLSQT----RSRSLLKGQQIHAHIIKSGLQVIPLVCHYL 95

Query: 58  QILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNT 117
              Y K       +++   S +       + I     N  P+ AI  +  M+ + L P+ 
Sbjct: 96  INFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDD 155

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
           +  P   KAC       VG+ VH   +KT    +V+V ++L+ +YA CG IK    +F  
Sbjct: 156 HIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDE 215

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
             H    R++VSW+ +I  Y ++    EA+  F +     L  +   L  V+  C     
Sbjct: 216 MPH----RNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATL 271

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L LG +IH       ++LS   F+ ++LI +Y KCG I  A +VFDE+P+KN+  WN+M+
Sbjct: 272 LELGKQIHGLCFKTSYDLSG--FVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAML 329

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
                    KEA D+F +M+  G++P+  T +CVL +C++ G +E GK     + K  I 
Sbjct: 330 IACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIE 389

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS-YTAMIVGLAIHG 405
                  ++VD+  + G++ +A  V + M      S + A I G  IHG
Sbjct: 390 PGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHG 438


>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
 gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
          Length = 531

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 190/487 (39%), Positives = 278/487 (57%), Gaps = 44/487 (9%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           G LP  +T P VLK+C +  ++  G+QVH    K   + ++YV N+L+  Y+VCG +   
Sbjct: 71  GFLPYMFTFPAVLKSCAKFMAVDEGRQVHGVIAKMDFVCDIYVENSLVHFYSVCGSLDDA 130

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
            ++F         RD VSWT +I   +K                                
Sbjct: 131 SRVF----DEMLVRDAVSWTGVIYPGIK-------------------------------- 154

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
               G L LG  IH  I +  F L  +V   NAL+DMY+KC ++P  ++VFDE+P K++V
Sbjct: 155 ----GYLILGKGIHGLIIERGFGLGLEV--SNALMDMYVKCESLPEEKQVFDELPEKDIV 208

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           SW S+I G+      KE L++F  +Q  G++PD   L  VL++ A+ G L+ G+ V  Y+
Sbjct: 209 SWTSIICGMVQCKFPKEVLELFCDVQSSGIEPDGIILTSVLSARASPGALDYGRLVREYI 268

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
           D   I  D  IG A+VDMYAKCG I+ A  +F  M  ++V ++ AM+ GLA+HG   KAL
Sbjct: 269 DHKAIKWDIQIGTAVVDMYAKCGCIEMAMQIFNVMPHKNVLTWNAMLNGLAMHGHGQKAL 328

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM-SRVYNLQPQTEHYGCMVD 470
            +F EM + G+ P+EVTF+  L+AC H G V EG ++F  M S+ YNL P+ EHYGCMVD
Sbjct: 329 QLFEEMVREGMRPNEVTFLVTLTACCHCGFVGEGRRYFHWMKSQQYNLPPRLEHYGCMVD 388

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           L  RAGL+ EAL+L K+MP++PD  + GALL  CK +  VEL   +++ LV F+    G 
Sbjct: 389 LLCRAGLLDEALELTKAMPMLPDVRIMGALLSTCKANGNVELPREILDRLVEFDSRDSGV 448

Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
           Y+L++NI +   RW +  ++R+ MK   ++KTPG S++EV G+ +E   GD  +P+   I
Sbjct: 449 YVLLSNILAINQRWADVTRIRRLMK-MGIEKTPGSSVIEVDGKAHEIIVGDLRYPQDKHI 507

Query: 591 YKLLDEI 597
              L  +
Sbjct: 508 RLFLKSL 514



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 162/307 (52%), Gaps = 14/307 (4%)

Query: 83  VYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           +Y+ N ++   S    L+ A  ++ EML++  +  T  +   +K       L +G+ +H 
Sbjct: 111 IYVENSLVHFYSVCGSLDDASRVFDEMLVRDAVSWTGVIYPGIKG-----YLILGKGIHG 165

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             ++      + V N LM +Y  C  +    ++F   + P+  +D+VSWT++I   V+  
Sbjct: 166 LIIERGFGLGLEVSNALMDMYVKCESLPEEKQVFD--ELPE--KDIVSWTSIICGMVQCK 221

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           +P E +  F D+  + + PDG+IL  VLSA +  G L  G  +  YI  +H  +  D+ I
Sbjct: 222 FPKEVLELFCDVQSSGIEPDGIILTSVLSARASPGALDYGRLVREYI--DHKAIKWDIQI 279

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
             A++DMY KCG I  A ++F+ MP KNV++WN+M+ GL   G  ++AL +F  M   G+
Sbjct: 280 GTAVVDMYAKCGCIEMAMQIFNVMPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGM 339

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCGRIDQA 379
           +P++ T +  L +C + G++  G+    ++     N    + +   +VD+  + G +D+A
Sbjct: 340 RPNEVTFLVTLTACCHCGFVGEGRRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEA 399

Query: 380 FGVFRSM 386
             + ++M
Sbjct: 400 LELTKAM 406



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/282 (19%), Positives = 124/282 (43%), Gaps = 10/282 (3%)

Query: 41  KQFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           K  H  II+ G        +    +Y K  SL    ++ +   +   V   + I   +  
Sbjct: 161 KGIHGLIIERGFGLGLEVSNALMDMYVKCESLPEEKQVFDELPEKDIVSWTSIICGMVQC 220

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
             P E + L+ ++   G+ P+   L  VL A     +L  G+ V  Y    A+  ++ + 
Sbjct: 221 KFPKEVLELFCDVQSSGIEPDGIILTSVLSARASPGALDYGRLVREYIDHKAIKWDIQIG 280

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
             ++ +YA CG I+   ++F+   H    +++++W  ++       +  +A+  F +M +
Sbjct: 281 TAVVDMYAKCGCIEMAMQIFNVMPH----KNVLTWNAMLNGLAMHGHGQKALQLFEEMVR 336

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             +RP+ +  ++ L+AC   G +  G +   ++    +NL P +  +  ++D+  + G +
Sbjct: 337 EGMRPNEVTFLVTLTACCHCGFVGEGRRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLL 396

Query: 276 PSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
             A ++   MP + +V    ++++     G  +   +I  R+
Sbjct: 397 DEALELTKAMPMLPDVRIMGALLSTCKANGNVELPREILDRL 438


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 195/574 (33%), Positives = 319/574 (55%), Gaps = 14/574 (2%)

Query: 41  KQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS-----LQNPQVYLYNFIIQC-LS 94
           K+ HA ++K+ +   +  +    I   +R  ++         + N  V  +N +I+  + 
Sbjct: 304 KEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQ 363

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    EA+  + +M+  G   +  ++  ++ A  +  +L  G ++HAY +K    SN+ V
Sbjct: 364 NLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQV 423

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            NTL+ +Y+ C L   + + F  R H    +DL+SWTT+I  Y + D   EA+  F D+ 
Sbjct: 424 GNTLIDMYSKCNLTCYMGRAF-LRMH---DKDLISWTTVIAGYAQNDCHVEALELFRDVA 479

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  +  D MIL  +L A S L  + +  +IH +I         D  I N L+D+Y KC N
Sbjct: 480 KKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL---LDTVIQNELVDVYGKCRN 536

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A +VF+ +  K+VVSW SMI+     G   EA+++FRRM   GL  D   L+C+L++
Sbjct: 537 MGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSA 596

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
            A++  L  G+ +H YL +     +G I  A+VDMYA CG +  A  VF  ++ + +  Y
Sbjct: 597 AASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQY 656

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           T+MI    +HG    A+++F +M    + PD ++F+ +L ACSHAGL++EG      M  
Sbjct: 657 TSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEH 716

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y L+P  EHY C+VD+ GRA  + EA + +K M   P A VW ALL AC+ H++ E+ E
Sbjct: 717 EYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGE 776

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
           I  + L+  EP+  G  +L++N+++ + RW +  K+R KMK   ++K PGCS +E+ G+ 
Sbjct: 777 IAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKV 836

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQ-SKNHGYI 607
           ++F   DKSHP++ EIY+ L E+  +  +  GY+
Sbjct: 837 HKFTARDKSHPESKEIYEKLSEVTRKLEREVGYV 870



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 209/411 (50%), Gaps = 14/411 (3%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQTQILYDKII-------SLSRGNEIENLSLQNPQVYLYN 87
           ++V Q +Q H+ I KT  P  +   L  K++       SL    ++ +  + +   + +N
Sbjct: 94  RAVSQGRQLHSRIFKT-FPSFELDFLAGKLVFMYGKCGSLDDAEKVFD-EMPDRTAFAWN 151

Query: 88  FIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
            +I   +SN  P  A+ALY  M ++G+     + P +LKAC + + +R G ++H+  +K 
Sbjct: 152 TMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKL 211

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
              S  ++ N L+ +YA    + A  +LF      Q + D V W +++ +Y       E 
Sbjct: 212 GYHSTGFIVNALVSMYAKNDDLSAARRLF---DGFQEKGDAVLWNSILSSYSTSGKSLET 268

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F +M      P+   +V  L+AC       LG +IH  +  +  + S ++++ NALI
Sbjct: 269 LELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTH-SSELYVCNALI 327

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
            MY +CG +P A ++  +M   +VV+WNS+I G      +KEAL+ F  M   G K D+ 
Sbjct: 328 AMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEV 387

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           ++  ++ +   +  L  G  +H Y+ K+  +++  +GN L+DMY+KC         F  M
Sbjct: 388 SMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRM 447

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
             +D+ S+T +I G A +    +AL++F ++++  +E DE+    +L A S
Sbjct: 448 HDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASS 498



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 173/325 (53%), Gaps = 19/325 (5%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKT-ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
              YVL+ C + +++  G+Q+H+   KT       ++   L+ +Y  CG +    K+F  
Sbjct: 82  AFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVF-- 139

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI-----VLSAC 232
                  R   +W T+I AYV    P  A+  ++     N+R +G+ L +     +L AC
Sbjct: 140 --DEMPDRTAFAWNTMIGAYVSNGEPASALALYW-----NMRVEGVPLGLSSFPALLKAC 192

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVV 291
           +KL D+  G ++H  +    ++ +   FI NAL+ MY K  ++ +AR++FD    K + V
Sbjct: 193 AKLRDIRSGSELHSLLVKLGYHSTG--FIVNALVSMYAKNDDLSAARRLFDGFQEKGDAV 250

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
            WNS+++  +  G+  E L++FR M   G  P+ +T+V  L +C    + +LGK +H  +
Sbjct: 251 LWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASV 310

Query: 352 DKNHI-NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
            K+   +++ ++ NAL+ MY +CG++ QA  + R M   DV ++ ++I G   +    +A
Sbjct: 311 LKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEA 370

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSA 435
           L+ FS+M   G + DEV+   +++A
Sbjct: 371 LEFFSDMIAAGHKSDEVSMTSIIAA 395



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 139/280 (49%), Gaps = 13/280 (4%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL  C K   +S G ++H  I     +   D F+   L+ MY KCG++  A KVFDEMP 
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVFDEMPD 144

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           +   +WN+MI      G+   AL ++  M+  G+     +   +L +CA +  +  G  +
Sbjct: 145 RTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSEL 204

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGK 406
           H+ L K   ++ GFI NALV MYAK   +  A  +F   + + D   + +++   +  GK
Sbjct: 205 HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGK 264

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSAC---SHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           + + L++F EM   G  P+  T V  L+AC   S+A L +E     +  S + +    +E
Sbjct: 265 SLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKE-----IHASVLKSSTHSSE 319

Query: 464 HYGC--MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
            Y C  ++ ++ R G + +A  +++ M    D   W +L+
Sbjct: 320 LYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/511 (35%), Positives = 304/511 (59%), Gaps = 8/511 (1%)

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTL 120
           Y    S+   +++     +   V   + I  C    +  + + +  EM  +G++PN  T+
Sbjct: 166 YGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTI 225

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
             +L AC Q+Q++  G+ V+    K  + ++V + N L+ +Y  CG +     L  F+  
Sbjct: 226 ISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLS--DALEAFQAM 283

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
           P   R   SW TLI  +V+     EA+  F +M    + PDG+ LV VLSAC++LG+L  
Sbjct: 284 PA--RYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRK 341

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G+ +H YI DN   +  D  + N+LI+MY KCG++ +A +VF  M  K+VVSW  M+ G 
Sbjct: 342 GMHVHSYIKDN--GICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGY 399

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
               QF  A ++F  M+   +   +  LV +L++C+ +G L+ G+ +H+Y+++ ++  D 
Sbjct: 400 VKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDL 459

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            + +ALVDMYAKCG ID A  +FR M+ +   S+ AMI GLA +G   +A+++F +M ++
Sbjct: 460 CLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLEL 519

Query: 421 -GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
              +PD +T   VL AC+H G+V+EG ++F  MS +  + P TEHYGC+VDL GRAG++ 
Sbjct: 520 QDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSL-GVVPDTEHYGCIVDLLGRAGMLD 578

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA   IK MP+ P+  +WG+LL AC++H +++L +++ +++V   P   G ++L++N+++
Sbjct: 579 EAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHA 638

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
            +++W +   +R  M  R ++KTPG S V+V
Sbjct: 639 EESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 140/458 (30%), Positives = 233/458 (50%), Gaps = 15/458 (3%)

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV- 135
           +  P  +++N +I+  S+   P +A+A++REM  +G+ P+ YT+  V+ A      L+  
Sbjct: 78  MAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWR 137

Query: 136 --GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
             G  +HA   +    S+V+V + L+  Y     +K   K+F        +RD+VSWT++
Sbjct: 138 SNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFE----EMYERDVVSWTSM 193

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I A  +  +  + +    +M    + P+ + ++ +LSAC +   +  G  ++  +    F
Sbjct: 194 ISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQV--GKF 251

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            +  DV I NALI MY KCG +  A + F  MP +   SWN++I G     + KEAL IF
Sbjct: 252 GIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIF 311

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
             M   G+ PD  TLV VL++CA +G L  G  VH+Y+  N I  D  + N+L++MYAKC
Sbjct: 312 EEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKC 371

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G +  A  VF++M  +DV S+T M+ G     +   A ++F EM    +   E+  V +L
Sbjct: 372 GDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLL 431

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SACS  G +++G +         N+         +VD++ + G I  A ++ + M     
Sbjct: 432 SACSQLGALDKG-REIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQH-KQ 489

Query: 494 AFVWGALLG--ACKIHAKVELAEIVMENLVRFEPEGDG 529
              W A++G  A   + K E  E+  + L   +P+ DG
Sbjct: 490 TLSWNAMIGGLASNGYGK-EAVELFDQMLELQDPKPDG 526



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 167/363 (46%), Gaps = 22/363 (6%)

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           +F    +  RP    L+  L AC+    L+   ++H  +   H  L+ D F+   LI + 
Sbjct: 5   YFHGNASQARPIRHHLLAYLDACASRAHLA---ELHGRLVRAH--LTSDSFVAGRLIALL 59

Query: 270 LKCG---NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
                  ++  ARKVFD M   N   WN MI G +     ++AL +FR M+  G+ PD++
Sbjct: 60  ASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNY 119

Query: 327 TL---VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           T+   V    + A + W   G  +H  + +    +D F+ + LV+ Y     + +A  VF
Sbjct: 120 TMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVF 179

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             M  RDV S+T+MI   A  G   K L + SEM   GI P++VT + +LSAC     V+
Sbjct: 180 EEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVD 239

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL-G 502
           EG +   +    + ++   +    ++ ++ + G + +AL+  ++MP       W  L+ G
Sbjct: 240 EG-RWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMP-ARYTKSWNTLIDG 297

Query: 503 ACKIHAKVELAEIVMENLVR-FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
             + H   E   I  E L+    P+G    I + ++ S+  +  E   LRK M      K
Sbjct: 298 FVQNHEHKEALRIFEEMLLHGVTPDG----ITLVSVLSACAQLGE---LRKGMHVHSYIK 350

Query: 562 TPG 564
             G
Sbjct: 351 DNG 353


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/524 (36%), Positives = 312/524 (59%), Gaps = 16/524 (3%)

Query: 85  LYNFIIQCLSNANPLEAIALYREM-LIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           LYNF IQ  +   PL    L+R   L++        +  +L A     S+   +++HA  
Sbjct: 10  LYNFFIQSRTQY-PL---LLHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCREIHARV 65

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
            K+ L  + ++ + L+  Y   G  +   KLF    H    +DLVSW +LI  + +  + 
Sbjct: 66  FKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPH----KDLVSWNSLISGFSRCLHM 121

Query: 204 TEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
           +  + +F+ M  + +++P+ + ++ ++SAC+  G L  G  IH +       L  +V + 
Sbjct: 122 S--LTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGFGIKVGGTL--EVKVA 175

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           N+LI+MY K G++ SA ++F+ +P  N VSWNS+IA     G  +E +D F +M+ LG++
Sbjct: 176 NSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIE 235

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            D+ T++ +L +C ++G  +L + +H  +          I  AL+D YAK GR+  ++GV
Sbjct: 236 QDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGV 295

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F  +   D  ++TAM+ G A HG   +A+ +F  M+  G+EPD VTF  +LSACSH+GLV
Sbjct: 296 FTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLV 355

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
            EG  +F  MS VY ++P+ +HY CMVDL GR GL+ +A ++I++MP+ P+A VWGALLG
Sbjct: 356 NEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLG 415

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           AC++H  +EL + V E+L+  EP     YI+++N+YS+   WK+A K+R  +KER +K+T
Sbjct: 416 ACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRT 475

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           PG S +E   + + F  GD+SHP+T +IY  L+E++ + +  GY
Sbjct: 476 PGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGY 519


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 185/539 (34%), Positives = 303/539 (56%), Gaps = 8/539 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTY 118
           +Y KI  + R  ++ +  +       +  +I  L  A   EA +A +  M    +  ++Y
Sbjct: 160 MYMKIGEIGRSCKVFD-EMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSY 218

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
                LKA   S +L  G+ +H  ++K     N +V N+L  +Y  CG  K  + L  FR
Sbjct: 219 AYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCG--KLDYGLHTFR 276

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
           +      D+VSWTT++ AY++M      + +F  M  +N+ P+      V+S C+    L
Sbjct: 277 K--MRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARL 334

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G ++H ++    F     + + N+++ +Y KCG + S  KVF  M  +++++W+++IA
Sbjct: 335 KWGEQLHAHVLCVGF--VNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIA 392

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
             +  G  +EA +   RM+  G KP++F L  VL+ C ++  LE GK +H ++    +  
Sbjct: 393 AYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQ 452

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
              + +AL+ MYAKCG I +A  +F      D+ S+TAMI G A HG + +A+++F  + 
Sbjct: 453 TSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQ 512

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
           +VG+ PD VTF+GVL+ACSHAG+V+ G  +F  MS+ Y++ P  EHYGCM+DL  RAG +
Sbjct: 513 KVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRL 572

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            +A  LI+SMP+  D  VW  LL AC+IH  V+  +     +++ +P   G +I + NI+
Sbjct: 573 HDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIF 632

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           ++K +WKEA  +R  MK + V K PG S V+V    + F  GD+SHP+  +IY +L+E+
Sbjct: 633 AAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDRSHPQGEDIYNILEEL 691



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 209/451 (46%), Gaps = 25/451 (5%)

Query: 79  QNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQ 137
           Q  +V   N I   +++++  EA+ L+ +M ++  L  + + L   LK C    +   G 
Sbjct: 77  QRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCGLGLNYLYGT 136

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            +H +S+K  L+++V+V + L+ +Y   G I    K+F         R+ V+WT +I   
Sbjct: 137 NLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVF----DEMPTRNAVTWTAVITGL 192

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           V+  Y    +  F  M ++ +  D     I L A +  G L+ G  IH       F+   
Sbjct: 193 VRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFD--E 250

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           + F+ N+L  MY KCG +      F +M   +VVSW +++      G+    L  F+RM+
Sbjct: 251 NSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMR 310

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF-----IGNALVDMYAK 372
              + P+++T   V++ CAN   L+ G+ +H      H+   GF     + N+++ +Y+K
Sbjct: 311 ASNVIPNEYTFSAVISCCANFARLKWGEQLHA-----HVLCVGFVNALSVANSIMTLYSK 365

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           CG +     VF SMK RD+ +++ +I   +  G   +A +  S M   G +P+E     V
Sbjct: 366 CGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASV 425

Query: 433 LSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
           LS C    ++E+G +   H L +     L+  +     ++ ++ + G I EA  +     
Sbjct: 426 LSVCGSMAILEQGKQLHAHVLSV----GLEQTSMVCSALIIMYAKCGSIAEASKIFMD-S 480

Query: 490 LVPDAFVWGALLGACKIHAKVELAEIVMENL 520
              D   W A++     H   + A  + EN+
Sbjct: 481 WKDDIISWTAMISGYAEHGHSQEAIELFENI 511



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 166/360 (46%), Gaps = 26/360 (7%)

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKL 235
           F Q PQ  RD VSWT +I  YV     +EA+  F  M  Q+ LR D  +L + L  C   
Sbjct: 72  FDQLPQ--RDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCGLG 129

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
            +   G  +H +       L   VF+ +AL+DMY+K G I  + KVFDEMP +N V+W +
Sbjct: 130 LNYLYGTNLHGFSVKX--GLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTA 187

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           +I GL   G  +  L  F  M    ++ D +     L + A+ G L  G+ +HT   K  
Sbjct: 188 VITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKG 247

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
            + + F+ N+L  MY KCG++D     FR M+  DV S+T ++      GK    L  F 
Sbjct: 248 FDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFK 307

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEG--------CKHFLDMSRVYNLQPQTEHYGC 467
            M    + P+E TF  V+S C++   ++ G        C  F++   V N          
Sbjct: 308 RMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVAN---------S 358

Query: 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           ++ L+ + G +     +  SM    D   W  ++ A   +++V   E   E L R   EG
Sbjct: 359 IMTLYSKCGELASVSKVFCSMKF-RDIITWSTIIAA---YSQVGYGEEAFEYLSRMRSEG 414



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 125/264 (47%), Gaps = 13/264 (4%)

Query: 41  KQFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           +Q HA ++  G     S  +    LY K   L+  +++   S++   +  ++ II   S 
Sbjct: 338 EQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKV-FCSMKFRDIITWSTIIAAYSQ 396

Query: 96  AN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
                EA      M  +G  PN + L  VL  C     L  G+Q+HA+ +   L     V
Sbjct: 397 VGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMV 456

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +YA CG I    K+F        + D++SWT +I  Y +  +  EAI  F ++ 
Sbjct: 457 CSALIIMYAKCGSIAEASKIF----MDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQ 512

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  LRPD +  + VL+ACS  G + LG      ++ + ++++P    +  +ID+  + G 
Sbjct: 513 KVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKD-YHITPSKEHYGCMIDLLCRAGR 571

Query: 275 IPSARKVFDEMPVK-NVVSWNSMI 297
           +  A  +   MP++ + V W++++
Sbjct: 572 LHDAETLIRSMPIQWDDVVWSTLL 595


>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 185/530 (34%), Positives = 304/530 (57%), Gaps = 8/530 (1%)

Query: 80  NPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
            P  + +N  ++  + + P   + L   ML   L P+ YTLP++L A  +  +       
Sbjct: 94  TPTAFSFNVALRFFAASRPRTTLQLSLRMLRAALRPDAYTLPFLLLAAARCPAPAFAASA 153

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           HA   K  L ++ +  ++L+ +Y+  G  +A  ++F        +RD+VSW ++I+AY  
Sbjct: 154 HALLQKLGLHNHDHTVHSLVTMYSNLGRPRAARRVFD----GILRRDVVSWNSMIKAYQA 209

Query: 200 MDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
                +A   F  M  +  + P+ + + +VL+AC   GDL+LG  +  ++      +   
Sbjct: 210 AGMKDDAARMFRAMVAEGAVPPNAVTVAVVLAACRDAGDLALGRWLEEWVKS--VGMEVG 267

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             + +AL+ MY KCG +  AR+VFD +  K+ V+WN++I G    G  KEA+ +F  M+ 
Sbjct: 268 SLVGSALVGMYEKCGEMAEARRVFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQ 327

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G +PD  TLV VL++CA +G LELG  +  Y  +    ++ ++G ALVDMY+KCG + +
Sbjct: 328 AGARPDKITLVGVLSACAAVGALELGTELDRYALQRGFYSNVYVGTALVDMYSKCGDLTR 387

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACS 437
           A  VF  + C++  S+ A+I GLA +G+  +A+  F  M  Q G+ PD++TF+GVLSAC 
Sbjct: 388 AIQVFEKLPCKNEASWNALICGLAFNGRGQEAIRQFELMRKQEGLRPDDITFIGVLSACV 447

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAGL+++G + F  ++  + + P+ EHY CMVDL  RAG + EA D I+ +P  PDA + 
Sbjct: 448 HAGLLKDGRRWFDSLTSEFQIIPKIEHYSCMVDLLARAGHLEEAWDFIEKIPGKPDAVML 507

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GALL AC+    VE++  V+  ++  EP     Y++ + IY+S +R  ++ ++R  M+ER
Sbjct: 508 GALLAACRKCKNVEVSVRVINKIMLLEPSNSWNYVVSSKIYASSDRLDDSARMRGLMRER 567

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            V K PGCS +EV G   EF  GD+      ++Y+LLD ++ + +  GY+
Sbjct: 568 GVSKIPGCSWIEVSGRVLEFYAGDEPQHGVEDMYQLLDTLVDEMRLEGYV 617


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 162/436 (37%), Positives = 269/436 (61%), Gaps = 12/436 (2%)

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAI----LSFFD-MCQANLRPDGMILVIVLSACSK 234
            P    D     TLI+A+     P  ++     +FF  M +  + P+      +L AC+ 
Sbjct: 81  RPSVPLDAFLANTLIRAHAT--SPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAA 138

Query: 235 L-GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY--LKCGNIPSARKVFDEMPVKNVV 291
           L G   +G++ H       F  + D ++ N LI MY     G +  AR VFD MP ++ V
Sbjct: 139 LPGSPDVGLQAHAAAL--KFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAV 196

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           +W++MI G    G   +A+++FR MQ  G++ D+ T++ VL +  ++G LEL +WV  ++
Sbjct: 197 TWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFV 256

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
           ++  I     + NAL+D  AKCG +D A  VF  M+ R V S+T++I  LA+ G+  +A+
Sbjct: 257 EREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAV 316

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
            +F EM   G+ PD+V F+GVL+ACSHAG+V+EGC +F  M   Y ++P+ EHYGCMVD+
Sbjct: 317 RVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDM 376

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
           FGRAG++  A++ +++MP+ P+  +W +L+ AC+ H ++EL E +  +L+   P  +  Y
Sbjct: 377 FGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANY 436

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           I+++N+++   RWKE  ++R++M +R +KK PGCS+VE+ GE +EF  GD+SHP+  +IY
Sbjct: 437 IMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIY 496

Query: 592 KLLDEIMHQSKNHGYI 607
           ++++E+  + +  G+I
Sbjct: 497 RMVEEMARELRRVGHI 512



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 193/397 (48%), Gaps = 32/397 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYL 85
           L +S +   L Q  AF++K+G   H   ++  ++ + S       L     +L  P V L
Sbjct: 29  LAASSTPTSLLQSVAFLLKSG--LHANSLVLTRLFAASASAAPALLDPLVAALLRPSVPL 86

Query: 86  YNFIIQCLSNANP--------LEAIALYREMLIKGLLPNTYTLPYVLKACWQ-SQSLRVG 136
             F+   L  A+         L A A +  ML   ++PN +T P++LKAC     S  VG
Sbjct: 87  DAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVG 146

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAV--CGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
            Q HA ++K    ++ YV NTL+ +Y+    G +     +F       A    V+W+ +I
Sbjct: 147 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESA----VTWSAMI 202

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
             YV+    ++A+  F +M    ++ D + ++ VL+A + LG L L   + R++      
Sbjct: 203 GGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIG 262

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
            S  V + NALID   KCG++  A  VF+ M  ++VVSW S+I  L   G+ KEA+ +F 
Sbjct: 263 KS--VTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFE 320

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD--KNHINTDGFIGN--ALVDMY 370
            M+  G+ PDD   + VL +C++ G ++ G     Y D  K     +  I +   +VDM+
Sbjct: 321 EMKVAGVPPDDVAFIGVLTACSHAGMVDEG---CGYFDAMKVEYGIEPKIEHYGCMVDMF 377

Query: 371 AKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGK 406
            + G +++A    R+M  + +   + +++     HG+
Sbjct: 378 GRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGR 414


>gi|297834340|ref|XP_002885052.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330892|gb|EFH61311.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 652

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 204/609 (33%), Positives = 330/609 (54%), Gaps = 26/609 (4%)

Query: 12  RYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG----SPQHQTQI--LYDKII 65
           RY   N    ++ L +  + + S S GQ  Q H F+++ G    SP+  T +  +Y K  
Sbjct: 53  RYEHHNVATSIATLQRCAQRKDSVS-GQ--QIHGFMVRKGFLDDSPRAVTSLVNMYAKCG 109

Query: 66  SLSRGNEIENLSLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVL 124
            + R   +   S ++  V+ YN +I   + N +PL+A+ +YREM  KG+LP+ YT P +L
Sbjct: 110 LMRRAVLVFGGSERD--VFGYNALISGFVVNGSPLDAMDMYREMRAKGILPDKYTFPSLL 167

Query: 125 KACWQSQSLRVG--QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           K    S ++ V   ++VHA + K   +S+ YV + L+  Y+    ++   K+F   + P 
Sbjct: 168 KG---SDAMEVSDVKKVHALAFKLGFVSDCYVGSALVTSYSKFMSVEDAQKVFD--ELPD 222

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            + D V W  L+  Y  +    +A++ F  M +  +      +  VLS+ +  GDL  G 
Sbjct: 223 -RDDSVLWNALVNGYSHIFRFEDALIVFSKMREEGVAMSRHTITSVLSSFTVSGDLDNGR 281

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            IH       F+    + + NALID+Y K   +  A  +F+ M  +++ +WNS++    +
Sbjct: 282 SIHGLAVKMGFD--SGIVVSNALIDLYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDY 339

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK----NHINT 358
            G     L +F  M   G++PD  TL  VL +C  +  L+ G+ +H Y+      N  ++
Sbjct: 340 CGDHDGTLALFETMLCSGIRPDIVTLTTVLPTCGRLASLKQGREIHGYMIASGLLNRKSS 399

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           +GFI N+L+DMY KCG +  A  VF SM+ +D  S+  MI G  +      ALD+FS M 
Sbjct: 400 NGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMC 459

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
           + G++PDE+TFVG+L ACSH+G V EG      M  +YN+ P ++HY C++D+ GRA  +
Sbjct: 460 RAGVKPDEITFVGLLQACSHSGFVNEGRNFLAQMETLYNILPTSDHYACVIDMLGRADKL 519

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
            EA DL  SMP+  +  VW ++L +C++H   +LA +  + L   EPE  G Y+LM+N+Y
Sbjct: 520 EEAYDLAISMPICDNPVVWRSILSSCRLHGNKDLAVVAGKRLYELEPEHCGVYVLMSNVY 579

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
               +++E L +R  MKE+ VKKTPGCS + +    + F  GD++HP+   I+  L  ++
Sbjct: 580 VEAKKYEEVLDVRDTMKEQNVKKTPGCSWIGLQNGVHTFFTGDQTHPEFESIHGWLSLLI 639

Query: 599 HQSKNHGYI 607
                H Y+
Sbjct: 640 SHMHGHEYM 648


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 178/502 (35%), Positives = 286/502 (56%), Gaps = 37/502 (7%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           Q +H +++KT    + +V   L+R+Y     I    KLF   Q+P    ++  +T+LI  
Sbjct: 44  QSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNP----NVYLYTSLIDG 99

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           +V     T+AI  F  M + ++  D   +  +L AC     L  G ++H  +  +   L 
Sbjct: 100 FVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLD 159

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS------------------------ 292
             + +   L+++Y KCG +  ARK+FD MP ++VV+                        
Sbjct: 160 RSIAL--KLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEM 217

Query: 293 -------WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
                  W  +I GL   G+F   L++FR MQ  G++P++ T VCVL++CA +G LELG+
Sbjct: 218 GTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGR 277

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
           W+H Y+ K  +  + F+  AL++MY++CG ID+A  +F  ++ +DV +Y +MI GLA+HG
Sbjct: 278 WIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHG 337

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465
           K+ +A+++FSEM +  + P+ +TFVGVL+ACSH GLV+ G + F  M  ++ ++P+ EHY
Sbjct: 338 KSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHY 397

Query: 466 GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
           GCMVD+ GR G + EA D I  M +  D  +  +LL ACKIH  + + E V + L     
Sbjct: 398 GCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYR 457

Query: 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585
              G++I+++N Y+S  RW  A ++R+KM++  + K PGCS +EV    +EF  GD  HP
Sbjct: 458 IDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHP 517

Query: 586 KTLEIYKLLDEIMHQSKNHGYI 607
           +   IYK L+E+ + +K  GY+
Sbjct: 518 ERKRIYKKLEELNYLTKFEGYL 539



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 197/399 (49%), Gaps = 42/399 (10%)

Query: 22  LSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL----- 76
           +SLLH++      K+   ++  H   IKT + Q    + ++ +    + N I++      
Sbjct: 30  ISLLHKN-----RKNPKHVQSIHCHAIKTRTSQ-DPFVAFELLRVYCKVNYIDHAIKLFR 83

Query: 77  SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
             QNP VYLY  +I   +S  +  +AI L+ +M+ K +L + Y +  +LKAC   ++L  
Sbjct: 84  CTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGS 143

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ---------------- 179
           G++VH   +K+ L  +  +   L+ LY  CG+++   K+F                    
Sbjct: 144 GKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFD 203

Query: 180 -----------HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV 228
                      +    RD V WT +I   V+       +  F +M    + P+ +  V V
Sbjct: 204 CGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCV 263

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           LSAC++LG L LG  IH Y+      +  + F+  ALI+MY +CG+I  A+ +FD + VK
Sbjct: 264 LSACAQLGALELGRWIHAYM--RKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVK 321

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           +V ++NSMI GL   G+  EA+++F  M    ++P+  T V VLN+C++ G ++LG  + 
Sbjct: 322 DVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIF 381

Query: 349 TYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
             ++  H I  +      +VD+  + GR+++AF     M
Sbjct: 382 ESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRM 420



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 134/291 (46%), Gaps = 48/291 (16%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
            + ++REM +KG+ PN  T   VL AC Q  +L +G+ +HAY  K  +  N +V   L+ 
Sbjct: 241 GLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALIN 300

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y+ CG I     LF   +     +D+ ++ ++I          EA+  F +M +  +RP
Sbjct: 301 MYSRCGDIDEAQALFDGVR----VKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRP 356

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           +G+  V VL+ACS  G + LG +I   +   H  + P+V  +  ++D+            
Sbjct: 357 NGITFVGVLNACSHGGLVDLGGEIFESMEMIH-GIEPEVEHYGCMVDI------------ 403

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC---AN 337
                              L   G+ +EA D   RM   G++ DD  L  +L++C    N
Sbjct: 404 -------------------LGRVGRLEEAFDFIGRM---GVEADDKMLCSLLSACKIHKN 441

Query: 338 IGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           IG   +G+ V   L +++ I++  FI   L + YA  GR   A  V   M+
Sbjct: 442 IG---MGEKVAKLLSEHYRIDSGSFI--MLSNFYASLGRWSYAAEVREKME 487


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 190/538 (35%), Positives = 304/538 (56%), Gaps = 18/538 (3%)

Query: 41  KQFHAFIIKTGSPQHQTQI----LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           ++ H  I+K GSP          +Y K   +     + +  L    V   + I+  + N 
Sbjct: 158 RKLHCQIVKVGSPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQND 217

Query: 97  NPLEAIALY---REMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
              E + L+   RE L++G   N YTL  ++ AC +  +L  G+ VH Y +K+    N +
Sbjct: 218 CLKEGLVLFNRMREGLVEG---NQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSF 274

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           +   L+ LY  CG I+    +F       +  DLVSWT +I  Y +  YP EA+  F D 
Sbjct: 275 LVTPLLDLYFKCGDIRDAFSVFD----ELSTIDLVSWTAMIVGYAQRGYPREALKLFTDE 330

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
              +L P+ +    VLSAC++ G L++G  +H          S D    NAL+DMY KC 
Sbjct: 331 RWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLG---SEDATFENALVDMYAKCH 387

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
            I  AR VF+ +  K+V++WNS+I+G T  G   EAL++F +M+   + PD  TLV VL+
Sbjct: 388 MIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLS 447

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDG-FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           +CA++G   +G  +H Y  K  + +   ++G AL++ YAKCG  + A  +F  M  ++  
Sbjct: 448 ACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTI 507

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           +++AMI G  I G   ++L++F +M +  +EP+EV F  +LSACSH+G++ EG ++F  M
Sbjct: 508 TWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTM 567

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
            +VYN  P  +HY CMVDL  RAG + EALD I+ +P+ PD  + GA L  C++H++ +L
Sbjct: 568 CQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDL 627

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
            E+ +  ++   P+    Y+LM+N+Y+S+ RW +A ++ + MK+R + K PG SLV++
Sbjct: 628 GEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDI 685



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 197/388 (50%), Gaps = 26/388 (6%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L  C    SLR   ++HA  +   L  ++     L+ LY   G ++    +F   ++P 
Sbjct: 45  LLGICKTVSSLR---KIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNP- 100

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP-----DGMILVIVLSACSKLGD 237
              DL SW  +I+ Y   D  +E I+ F++     LR      D ++  IVL ACS+L +
Sbjct: 101 ---DLYSWKVMIRWYFLNDSYSE-IVQFYN---TRLRKCLNEYDNVVFSIVLKACSELRE 153

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
              G K+H  I       SPD F+   L+DMY KC  +  +R+VFDE+  +NVV W SMI
Sbjct: 154 TDEGRKLHCQIVKVG---SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMI 210

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
            G       KE L +F RM+   ++ + +TL  ++ +C  +G L  GKWVH Y+ K+  +
Sbjct: 211 VGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFD 270

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            + F+   L+D+Y KCG I  AF VF  +   D+ S+TAMIVG A  G   +AL +F++ 
Sbjct: 271 LNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDE 330

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVYNLQPQTEHY-GCMVDLFGRA 475
               + P+ VT   VLSAC+  G +  G   H L +     L  +   +   +VD++ + 
Sbjct: 331 RWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGI----KLGSEDATFENALVDMYAKC 386

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGA 503
            +I +A  + +++    D   W +++  
Sbjct: 387 HMIGDARYVFETV-FDKDVIAWNSIISG 413


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/550 (33%), Positives = 293/550 (53%), Gaps = 31/550 (5%)

Query: 86  YNFIIQCLSN-ANPLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           YN +I   S+  +P  ++ LYR +L +  + P   TL  ++          +G  VH   
Sbjct: 113 YNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQV 172

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA-------------------- 183
           ++    +  +V + L+ +YA  GLI+   ++F   +                        
Sbjct: 173 LRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAK 232

Query: 184 -------QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
                   RD ++WTT++    +     EA+  F  M    +  D      +L+AC  L 
Sbjct: 233 GLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALA 292

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
            L  G +IH YIT   +    +VF+ +AL+DMY KC +I  A  VF  M  +N++SW +M
Sbjct: 293 ALEEGKQIHAYITRTWYE--DNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAM 350

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           I G       +EA+  F  MQ  G+KPDDFTL  V++SCAN+  LE G   H     + +
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 410

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
                + NALV +Y KCG I+ A  +F  M   D  S+TA++ G A  GKA + +D+F +
Sbjct: 411 MRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEK 470

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M   G++PD VTF+GVLSACS AGLVE+GC +F  M + + + P  +HY CM+DL+ R+G
Sbjct: 471 MLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSG 530

Query: 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536
             +EA + IK MP  PDAF W  LL +C++   +E+ +   ENL+  +P+   +Y+L+ +
Sbjct: 531 RFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCS 590

Query: 537 IYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDE 596
           ++++K +W E   LR+ M++R+VKK PGCS ++   + + F   D+SHP +  IY+ L+ 
Sbjct: 591 MHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEW 650

Query: 597 IMHQSKNHGY 606
           +  +    GY
Sbjct: 651 LNSKMAEEGY 660



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 146/511 (28%), Positives = 229/511 (44%), Gaps = 85/511 (16%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P T+ L ++L A  +S  L   ++V           N++  N L+   A   L+  + +L
Sbjct: 46  PPTFLLNHLLTAYAKSGRLARARRV----FDEMPDPNLFTRNALLSALAHSRLVPDMERL 101

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACS 233
           F        +RD VS+  LI  +     P  ++  +  +  + ++RP  + L  ++   S
Sbjct: 102 FA----SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVAS 157

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV-- 291
            L D +LG  +H  +           F+ + L+DMY K G I  AR+VF EM  K VV  
Sbjct: 158 ALSDRALGHSVHCQVL--RLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMY 215

Query: 292 -----------------------------SWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
                                        +W +M+ GLT  G   EALD+FRRM+  G+ 
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVG 275

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            D +T   +L +C  +  LE GK +H Y+ +     + F+G+ALVDMY+KC  I  A  V
Sbjct: 276 IDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAV 335

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           FR M CR++ S+TAMIVG   +  + +A+  FSEM   GI+PD+ T   V+S+C++   +
Sbjct: 336 FRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASL 395

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           EEG + F  ++ V  L         +V L+G+ G I +A  L   M    D   W AL+ 
Sbjct: 396 EEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVT 453

Query: 503 A----CKIHAKVELAEIVMENLVRFEPEG------------------------------- 527
                 K    ++L E ++ N ++  P+G                               
Sbjct: 454 GYAQFGKAKETIDLFEKMLANGLK--PDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHG 511

Query: 528 ----DGAYILMTNIYSSKNRWKEALKLRKKM 554
               D  Y  M ++YS   R+KEA +  K+M
Sbjct: 512 IVPIDDHYTCMIDLYSRSGRFKEAEEFIKQM 542



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 182/371 (49%), Gaps = 35/371 (9%)

Query: 54  QHQTQILYDKIIS-LSRGNEIEN------LSLQNPQVYLYNFIIQCLSNANPLEAIALYR 106
           + +T ++Y+ +I+ L R   IE+      L +    +     +     N   LEA+ ++R
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 107 EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
            M  +G+  + YT   +L AC    +L  G+Q+HAY  +T    NV+V + L+ +Y+ C 
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
            I+    +F         R+++SWT +I  Y +     EA+ +F +M    ++PD   L 
Sbjct: 328 SIRLAEAVF----RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLG 383

Query: 227 IVLSACSKLGDLSLGIKIH---------RYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
            V+S+C+ L  L  G + H         RYIT           + NAL+ +Y KCG+I  
Sbjct: 384 SVISSCANLASLEEGAQFHCLALVSGLMRYIT-----------VSNALVTLYGKCGSIED 432

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A ++FDEM   + VSW +++ G    G+ KE +D+F +M   GLKPD  T + VL++C+ 
Sbjct: 433 AHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSR 492

Query: 338 IGWLELGKWVHTYLDKNH--INTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-CRDVYSY 394
            G +E G      + K+H  +  D      ++D+Y++ GR  +A    + M    D + +
Sbjct: 493 AGLVEKGCDYFDSMQKDHGIVPIDDHY-TCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGW 551

Query: 395 TAMIVGLAIHG 405
             ++    + G
Sbjct: 552 ATLLSSCRLRG 562



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 146/357 (40%), Gaps = 47/357 (13%)

Query: 41  KQFHAFIIKTGSPQH-----QTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           KQ HA+I +T    +         +Y K  S+     +         +     I+    N
Sbjct: 298 KQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQN 357

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           A   EA+  + EM + G+ P+ +TL  V+ +C    SL  G Q H  ++ + L+  + V 
Sbjct: 358 ACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS 417

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ LY  CG I+  H+LF       +  D VSWT L+  Y +     E I  F  M  
Sbjct: 418 NALVTLYGKCGSIEDAHRLF----DEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLA 473

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             L+PDG+  + VLSACS+ G +  G      +  +H  + P    +  +ID+Y + G  
Sbjct: 474 NGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDH-GIVPIDDHYTCMIDLYSRSGRF 532

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A +   +MP                                    PD F    +L+SC
Sbjct: 533 KEAEEFIKQMP----------------------------------HSPDAFGWATLLSSC 558

Query: 336 ANIGWLELGKW-VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
              G +E+GKW     L+ +  N   ++   L  M+A  G+  +   + R M+ R V
Sbjct: 559 RLRGNMEIGKWAAENLLETDPQNPASYV--LLCSMHAAKGQWTEVAHLRRGMRDRQV 613


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/566 (34%), Positives = 315/566 (55%), Gaps = 13/566 (2%)

Query: 41  KQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS-----LQNPQVYLYNFIIQC-LS 94
           K+ HA ++K+ +   +  +    I   +R  ++         + N  V  +N +I+  + 
Sbjct: 304 KEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQ 363

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    EA+  + +M+  G   +  ++  ++ A  +  +L  G ++HAY +K    SN+ V
Sbjct: 364 NLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQV 423

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            NTL+ +Y+ C L   + + F  R H    +DL+SWTT+I  Y + D   EA+  F D+ 
Sbjct: 424 GNTLIDMYSKCNLTCYMGRAF-LRMH---DKDLISWTTVIAGYAQNDCHVEALELFRDVA 479

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  +  D MIL  +L A S L  + +  +IH +I         D  I N L+D+Y KC N
Sbjct: 480 KKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL---LDTVIQNELVDVYGKCRN 536

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A +VF+ +  K+VVSW SMI+     G   EA+++FRRM   GL  D   L+C+L++
Sbjct: 537 MGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSA 596

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
            A++  L  G+ +H YL +     +G I  A+VDMYA CG +  A  VF  ++ + +  Y
Sbjct: 597 AASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQY 656

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           T+MI    +HG    A+++F +M    + PD ++F+ +L ACSHAGL++EG      M  
Sbjct: 657 TSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEH 716

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y L+P  EHY C+VD+ GRA  + EA + +K M   P A VW ALL AC+ H++ E+ E
Sbjct: 717 EYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGE 776

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
           I  + L+  EP+  G  +L++N+++ + RW +  K+R KMK   ++K PGCS +E+ G+ 
Sbjct: 777 IAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKV 836

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQ 600
           ++F   DKSHP++ EIY+ L E+  +
Sbjct: 837 HKFTARDKSHPESKEIYEKLSEVTRK 862



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 209/411 (50%), Gaps = 14/411 (3%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQTQILYDKII-------SLSRGNEIENLSLQNPQVYLYN 87
           ++V Q +Q H+ I KT  P  +   L  K++       SL    ++ +  + +   + +N
Sbjct: 94  RAVSQGRQLHSRIFKT-FPSFELDFLAGKLVFMYGKCGSLDDAEKVFD-EMPDRTAFAWN 151

Query: 88  FIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
            +I   +SN  P  A+ALY  M ++G+     + P +LKAC + + +R G ++H+  +K 
Sbjct: 152 TMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKL 211

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
              S  ++ N L+ +YA    + A  +LF      Q + D V W +++ +Y       E 
Sbjct: 212 GYHSTGFIVNALVSMYAKNDDLSAARRLF---DGFQEKGDAVLWNSILSSYSTSGKSLET 268

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F +M      P+   +V  L+AC       LG +IH  +  +  + S ++++ NALI
Sbjct: 269 LELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTH-SSELYVCNALI 327

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
            MY +CG +P A ++  +M   +VV+WNS+I G      +KEAL+ F  M   G K D+ 
Sbjct: 328 AMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEV 387

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           ++  ++ +   +  L  G  +H Y+ K+  +++  +GN L+DMY+KC         F  M
Sbjct: 388 SMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRM 447

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
             +D+ S+T +I G A +    +AL++F ++++  +E DE+    +L A S
Sbjct: 448 HDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASS 498



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 173/325 (53%), Gaps = 19/325 (5%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKT-ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
              YVL+ C + +++  G+Q+H+   KT       ++   L+ +Y  CG +    K+F  
Sbjct: 82  AFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVF-- 139

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI-----VLSAC 232
                  R   +W T+I AYV    P  A+  ++     N+R +G+ L +     +L AC
Sbjct: 140 --DEMPDRTAFAWNTMIGAYVSNGEPASALALYW-----NMRVEGVPLGLSSFPALLKAC 192

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVV 291
           +KL D+  G ++H  +    ++ +   FI NAL+ MY K  ++ +AR++FD    K + V
Sbjct: 193 AKLRDIRSGSELHSLLVKLGYHSTG--FIVNALVSMYAKNDDLSAARRLFDGFQEKGDAV 250

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
            WNS+++  +  G+  E L++FR M   G  P+ +T+V  L +C    + +LGK +H  +
Sbjct: 251 LWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASV 310

Query: 352 DKNHI-NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
            K+   +++ ++ NAL+ MY +CG++ QA  + R M   DV ++ ++I G   +    +A
Sbjct: 311 LKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEA 370

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSA 435
           L+ FS+M   G + DEV+   +++A
Sbjct: 371 LEFFSDMIAAGHKSDEVSMTSIIAA 395



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 139/280 (49%), Gaps = 13/280 (4%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL  C K   +S G ++H  I     +   D F+   L+ MY KCG++  A KVFDEMP 
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVFDEMPD 144

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           +   +WN+MI      G+   AL ++  M+  G+     +   +L +CA +  +  G  +
Sbjct: 145 RTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSEL 204

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGK 406
           H+ L K   ++ GFI NALV MYAK   +  A  +F   + + D   + +++   +  GK
Sbjct: 205 HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGK 264

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSAC---SHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           + + L++F EM   G  P+  T V  L+AC   S+A L +E     +  S + +    +E
Sbjct: 265 SLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKE-----IHASVLKSSTHSSE 319

Query: 464 HYGC--MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
            Y C  ++ ++ R G + +A  +++ M    D   W +L+
Sbjct: 320 LYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358


>gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 812

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 206/626 (32%), Positives = 326/626 (52%), Gaps = 73/626 (11%)

Query: 35  KSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS 94
           KS+ Q KQ HA II  G   HQ  IL  K+I+     ++    L + Q+     + +C +
Sbjct: 106 KSLSQGKQIHAHIISLGI--HQNPILVSKLINFYASVDL----LADAQI-----VAECSN 154

Query: 95  NANPL----------------EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           + +PL                +AI++YR ML KG++P+ YT P VLKAC +      G  
Sbjct: 155 SFDPLHWNMVISLYVKNCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVA 214

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           VH    ++++  +++V N L+ +Y   G ++   +LF         RD VSW T+I  Y 
Sbjct: 215 VHKAIQESSIKWSLFVHNALVFMYGRFGKLEVARELFDI----MPARDDVSWNTMISCYA 270

Query: 199 KMDYPTEAI----------------------------------LSFFDMCQANLRPDGMI 224
                 EA                                   L  F   +A ++ D + 
Sbjct: 271 SRGLWDEAFRLFGCMREAGIERNIIIWNTIAGGCLHTGNFKGALKLFSQMRAVIQLDSVA 330

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF--IHNALIDMYLKCGNIPSARKVF 282
           +V+ L+ACS +G + LG +IH +     F    DVF  + N LI MY +C ++  A  +F
Sbjct: 331 MVVGLNACSHIGAVKLGKEIHGHAVRTCF----DVFDNVKNTLITMYSRCRDLNHAYLLF 386

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
            ++  K +++WN+M++G  H  + +E   + R M   G++P+  T+  +L  CA I  L+
Sbjct: 387 RKIDEKGLITWNAMLSGFAHMDRSEEVSFLLREMLREGVEPNYVTIASILPLCARIANLQ 446

Query: 343 LGKWVHTYLDKNHINTDGFI--GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
            GK  H Y+ K      G++   N+LV+MY++ G++ +A  VF S+  +D  +YT+MI+G
Sbjct: 447 HGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMG 506

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
             + G    AL +F+EM ++ I+PD VT V VL ACSH+GLV +G   F  M  VY + P
Sbjct: 507 YGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLVAQGQVLFRKMIEVYGIDP 566

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
           + EHY CMVDLFGRAGL+ +A ++I  M   P + +W  L+GACKIH    + E     L
Sbjct: 567 RVEHYSCMVDLFGRAGLLDKAKEVITGMSCKPTSAIWATLIGACKIHGNTVIGEWAAGKL 626

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
           +  +P+  G Y+L+ N+Y++ NR  +  + R  M++   K+TPGC+ V+V  E   F  G
Sbjct: 627 LEMKPDHSGYYLLIANMYAAANRLDKEAEARTYMRDSGAKRTPGCAWVDVGRELCPFLAG 686

Query: 581 DKSHPKTLEIYKLLDEIMHQSKNHGY 606
           D S+P++ EI  ++  +    K+ GY
Sbjct: 687 DTSNPRSCEISPMMKRLNILMKDAGY 712



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/405 (25%), Positives = 193/405 (47%), Gaps = 43/405 (10%)

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           + ++L  C   +SL  G+Q+HA+ +   +  N  + + L+  YA   L+     +     
Sbjct: 95  IKHLLLGCTNLKSLSQGKQIHAHIISLGIHQNPILVSKLINFYASVDLLADAQIV----A 150

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
                 D + W  +I  YVK     +AI  +  M    + PD      VL AC +L D  
Sbjct: 151 ECSNSFDPLHWNMVISLYVKNCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYD 210

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA- 298
            G+ +H+ I ++    S  +F+HNAL+ MY + G +  AR++FD MP ++ VSWN+MI+ 
Sbjct: 211 SGVAVHKAIQESSIKWS--LFVHNALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISC 268

Query: 299 ----------------------------------GLTHRGQFKEALDIFRRMQGLGLKPD 324
                                             G  H G FK AL +F +M+ + ++ D
Sbjct: 269 YASRGLWDEAFRLFGCMREAGIERNIIIWNTIAGGCLHTGNFKGALKLFSQMRAV-IQLD 327

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
              +V  LN+C++IG ++LGK +H +  +   +    + N L+ MY++C  ++ A+ +FR
Sbjct: 328 SVAMVVGLNACSHIGAVKLGKEIHGHAVRTCFDVFDNVKNTLITMYSRCRDLNHAYLLFR 387

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            +  + + ++ AM+ G A   ++ +   +  EM + G+EP+ VT   +L  C+    ++ 
Sbjct: 388 KIDEKGLITWNAMLSGFAHMDRSEEVSFLLREMLREGVEPNYVTIASILPLCARIANLQH 447

Query: 445 GCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
           G + H   + R    +     +  +V+++ R+G + EA  +  S+
Sbjct: 448 GKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKVLEARKVFDSL 492


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 192/532 (36%), Positives = 291/532 (54%), Gaps = 47/532 (8%)

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
           LP+  T   +LK   +  SL   +Q+HA  +   L  N  +   L+  Y  C  +     
Sbjct: 52  LPSHSTFVQLLK---KRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARI 108

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP---DGMILVIVLS 230
           +F   Q P     ++ W  +IQAY K     E++  F  M  A+ RP   D      V +
Sbjct: 109 VFD--QFPSLPPTII-WNLMIQAYSKTPSSQESLYLFHQML-AHGRPTSADKYTFTFVFT 164

Query: 231 ACSKLGDL-SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           ACS+   L   G  +H  +  + +    D+F+ N+L++MY     +  A++VFDEMP ++
Sbjct: 165 ACSRHPTLRGYGENVHGMVVKDGYE--SDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRD 222

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLG----------------------------- 320
           V++W S++ G   RG+   A ++F  M G                               
Sbjct: 223 VITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLC 282

Query: 321 ---LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
              +KP++  LV +L++CA++G L+ GKW+H Y+DKN I     I  AL+DMYAKCGRID
Sbjct: 283 HDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRID 342

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A  VF  +  RD+ ++T+MI GL++HG   + L  FSEM   G +PD++T +GVL+ CS
Sbjct: 343 CARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCS 402

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           H+GLVEEG   F DM  ++ + P+ EHYGC++DL GRAG +  A + IKSMP+ PD   W
Sbjct: 403 HSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAW 462

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEG-DGAYILMTNIYSSKNRWKEALKLRKKMKE 556
            ALL AC+IH  V+L E ++ ++    P    G Y+L++N+Y+S  +W+   K+RK M +
Sbjct: 463 RALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQ 522

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ-SKNHGYI 607
           R  +  PGCS +E+ G  +EF   DK HP+  EI K L+E++ + S   GY+
Sbjct: 523 RGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYV 574



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/430 (30%), Positives = 207/430 (48%), Gaps = 53/430 (12%)

Query: 17  NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGN 71
           +TF QL        L+   S+ Q+KQ HA ++  G  Q+ + +      Y    +LS   
Sbjct: 56  STFVQL--------LKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFAR 107

Query: 72  EIENLSLQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKG--LLPNTYTLPYVLKACW 128
            + +     P   ++N +IQ  S   +  E++ L+ +ML  G     + YT  +V  AC 
Sbjct: 108 IVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACS 167

Query: 129 QSQSLR-VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ--- 184
           +  +LR  G+ VH   +K    S+++V N+L+ +Y++   +    ++F   + PQ     
Sbjct: 168 RHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFD--EMPQRDVIT 225

Query: 185 --------------------------RDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQAN 217
                                     R+ VSW  ++  YV   +  EA+  F DM C   
Sbjct: 226 WTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDE 285

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++P+  +LV +LSAC+ LG L  G  IH YI  N   LS +  I  ALIDMY KCG I  
Sbjct: 286 VKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSN--ISTALIDMYAKCGRIDC 343

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           AR+VFD +  +++++W SMI+GL+  G   E L  F  M   G KPDD TL+ VLN C++
Sbjct: 344 ARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSH 403

Query: 338 IGWLELGKWV-HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYT 395
            G +E G  + H  +    I         L+D+  + GR++ AF   +SM    DV ++ 
Sbjct: 404 SGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWR 463

Query: 396 AMIVGLAIHG 405
           A++    IHG
Sbjct: 464 ALLSACRIHG 473


>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1329

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 185/532 (34%), Positives = 302/532 (56%), Gaps = 49/532 (9%)

Query: 78   LQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
            +Q P V++YN +I+  ++ ++P+ ++  Y  ML   + P++YT   +++A   +     G
Sbjct: 838  MQKPNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQASAFASGF--G 895

Query: 137  QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            + + A+  K     +V +  TL+  Y+  G I+   K+F        +RD V+WTT++ A
Sbjct: 896  ESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIREARKVFD----EMPERDDVTWTTMVSA 951

Query: 197  YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            Y ++           DM  AN   + M                                 
Sbjct: 952  YRQV----------LDMDSANSLANQMP-------------------------------E 970

Query: 257  PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
             +    N LID Y + GN+  A  +F++MPVK+++SW +MI G +   +++EA+ +F +M
Sbjct: 971  KNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKM 1030

Query: 317  QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
               G+ PD+ T+  V+++CA++G LE+GK VH Y  +N    D +IG+ALVDMY+KCG +
Sbjct: 1031 MEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSL 1090

Query: 377  DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
            ++A  VF ++  ++++ + ++I GLA HG A +AL +F++M    ++P+ VTFV V +AC
Sbjct: 1091 ERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTAC 1150

Query: 437  SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
            +HAGLVEEG + +  M   Y++    EHYGCMV LF +AGLI EAL+LI SM   P+A +
Sbjct: 1151 THAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVI 1210

Query: 497  WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
            WGALL  C+IH  +E+AEI    L+  EP   G Y L+ ++Y+ +NRW++  ++R +M+E
Sbjct: 1211 WGALLDGCRIHKNLEIAEIAFNKLMILEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRE 1270

Query: 557  RKVKK-TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              ++K  PG S + +    + F   DKSH  + E+  LLDEI  Q    GY+
Sbjct: 1271 LGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEVCLLLDEIYEQMGLAGYV 1322


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/545 (34%), Positives = 301/545 (55%), Gaps = 18/545 (3%)

Query: 73  IENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQS 132
            EN+  +N  V     ++  + N+ P  AI +++EML  G  P+ YTL  VL AC   QS
Sbjct: 122 FENMPRRNV-VAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQS 180

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           L++G Q HAY +K  L  +  V + L  LY+ CG ++   K F   +    +++++SWT+
Sbjct: 181 LKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIR----EKNVISWTS 236

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
            + A      P + +  F +M   +++P+   L   LS C ++  L LG ++        
Sbjct: 237 AVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIK-- 294

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG-----------LT 301
           F    ++ + N+L+ +YLK G I  A + F+ M   ++V+WN+MIAG           L+
Sbjct: 295 FGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLS 354

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
              +  EAL IF ++   G+KPD FTL  VL+ C+ +  +E G+ +H    K    +D  
Sbjct: 355 ACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVI 414

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           +  +L+ MY KCG I++A   F  M  R + ++T+MI G + HG + +AL IF +MS  G
Sbjct: 415 VSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAG 474

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           + P+ VTFVGVLSACSHAG+V +   +F  M + Y ++P  +HY CMVD+F R G + +A
Sbjct: 475 VRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQA 534

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
           L+ IK M   P  F+W   +  C+ H  +EL     E L+  +P+    Y+L+ N+Y S 
Sbjct: 535 LNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLKPKDPETYVLLLNMYLSA 594

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQS 601
           +R+ +  ++RK M+  KV K    S + +  + Y F+  DK+HP +  I K L++++ ++
Sbjct: 595 DRFDDVSRVRKMMEVEKVGKLKDWSWISIKDKVYSFKTNDKTHPPSSLICKSLEDLLAKA 654

Query: 602 KNHGY 606
           KN GY
Sbjct: 655 KNLGY 659



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/485 (29%), Positives = 220/485 (45%), Gaps = 66/485 (13%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+ C   +S    Q VH + MKT    N +V + L+ +YA CG ++   ++F       
Sbjct: 70  LLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVF----ENM 125

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            +R++V+WTTL+  +V+   P  AI  F +M  A   P    L  VL ACS L  L LG 
Sbjct: 126 PRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGD 185

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           + H YI   H +   D  + +AL  +Y KCG +  A K F  +  KNV+SW S ++    
Sbjct: 186 QFHAYIIKYHLDF--DTSVGSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGD 243

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
            G   + L +F  M    +KP++FTL   L+ C  I  LELG  V +   K    ++  +
Sbjct: 244 NGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRV 303

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG-----------LAIHGKAWKAL 411
            N+L+ +Y K G I +A   F  M    + ++ AMI G           L+   +  +AL
Sbjct: 304 RNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEAL 363

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACS-----------HA--------------------- 439
            IFS+++Q G++PD  T   VLS CS           HA                     
Sbjct: 364 KIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMY 423

Query: 440 ---GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV---PD 493
              G +E   K FL+MS    +      +  M+  F + G+ ++AL + + M L    P+
Sbjct: 424 NKCGSIERASKAFLEMSTRTMIA-----WTSMITGFSQHGMSQQALHIFEDMSLAGVRPN 478

Query: 494 AFVWGALLGACKIHAKVELA----EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549
              +  +L AC     V  A    EI M+   + +P  D  Y  M +++    R ++AL 
Sbjct: 479 TVTFVGVLSACSHAGMVSQALNYFEI-MQKKYKIKPVMD-HYECMVDMFVRLGRLEQALN 536

Query: 550 LRKKM 554
             KKM
Sbjct: 537 FIKKM 541


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/591 (32%), Positives = 314/591 (53%), Gaps = 44/591 (7%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN-ANPLEAIALYREMLIK-GLLPNT 117
           +Y +  SLS   ++ +  +    V  +N II+  +    P  A+ ++ +M  + G  P+ 
Sbjct: 171 MYSRCGSLSDARKVFD-EMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDD 229

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH----- 172
            TL  VL  C    +  +G+Q H +++ + ++ N++V N L+ +YA  G++   +     
Sbjct: 230 ITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSN 289

Query: 173 --------------------------KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
                                     +LF   Q  + + D+V+W+  I  Y +     EA
Sbjct: 290 MPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEA 349

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL-----SPDVFI 261
           +     M  + ++P+ + L+ VLS C+ +G L  G +IH Y      +L       +  +
Sbjct: 350 LGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMV 409

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVK--NVVSWNSMIAGLTHRGQFKEALDIFRRM--Q 317
            N LIDMY KC  +  AR +FD +  K  +VV+W  MI G +  G   +AL++   M  +
Sbjct: 410 INQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG-FIGNALVDMYAKCGRI 376
               +P+ FT+ C L +CA++  L +GK +H Y  +N  N    F+ N L+DMYAKCG I
Sbjct: 470 DCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDI 529

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
             A  VF +M  ++  ++T+++ G  +HG   +AL IF EM ++G + D VT + VL AC
Sbjct: 530 GDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYAC 589

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SH+G++++G ++F  M   + + P  EHY C+VDL GRAG +  AL LI+ MP+ P   V
Sbjct: 590 SHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVV 649

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W ALL  C+IH KVEL E   + +       DG+Y L++N+Y++  RWK+  ++R  M+ 
Sbjct: 650 WVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRH 709

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + +KK PGCS VE       F  GDK+HP   EIY++L + M + K+ GY+
Sbjct: 710 KGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYV 760



 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 175/583 (30%), Positives = 282/583 (48%), Gaps = 62/583 (10%)

Query: 6   TVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGS-PQHQTQILYDKI 64
             A   ++  ++ F   +L    P +   K++ Q+K  H  ++  G    + T  L    
Sbjct: 10  AAAKSHQHLKVSLFSTSALEITPPFIHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTY 69

Query: 65  ISLSRGNEIENLSLQNPQ----VYLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYT 119
           ISL   +   +L  + P     VY +N +I+   +N    + ++ +  M      P+ YT
Sbjct: 70  ISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYT 129

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
            P+V KAC +  S+R G   HA S  T  +SNV+V N L+ +Y+ CG +    K+F    
Sbjct: 130 FPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVF---- 185

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDL 238
                 D+VSW ++I++Y K+  P  A+  F  M  +   RPD + LV VL  C+ +G  
Sbjct: 186 DEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTR 245

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
           SLG + H +   +   +  ++F+ N L+DMY K G +  A  VF  MPVK+VVSWN+M+A
Sbjct: 246 SLGKQFHGFAVTS--EMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVA 303

Query: 299 GLTHRGQFKEALDIFRRMQ---------------------GL--------------GLKP 323
           G +  G+F++A+ +F +MQ                     GL              G+KP
Sbjct: 304 GYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTY-------LDKNHINTDGFIGNALVDMYAKCGRI 376
           ++ TL+ VL+ CA++G L  GK +H Y       L KN    +  + N L+DMYAKC ++
Sbjct: 364 NEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKV 423

Query: 377 DQAFGVFRSM--KCRDVYSYTAMIVGLAIHGKAWKALDIFSEM--SQVGIEPDEVTFVGV 432
           D A  +F S+  K RDV ++T MI G + HG A KAL++ SEM        P+  T    
Sbjct: 424 DIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCA 483

Query: 433 LSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           L AC+    +  G + H   +    N  P      C++D++ + G I +A  +  +M + 
Sbjct: 484 LVACASLAALSIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGDIGDARLVFDNM-ME 541

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
            +   W +L+    +H   E A  + E + R   + DG  +L+
Sbjct: 542 KNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLV 584



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 133/299 (44%), Gaps = 39/299 (13%)

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKN--VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           LI  Y+  G +  A  +    P  +  V  WNS+I    + G+  + L  F  M  L   
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD++T   V  +C  I  +  G   H         ++ F+GNALV MY++CG +  A  V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS-QVGIEPDEVTFVGVLSACSHAGL 441
           F  M   DV S+ ++I   A  GK   AL++FS+M+ + G  PD++T V VL  C+  G 
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
              G K F   +    +        C+VD++ + G++ EA  +  +MP V D   W A++
Sbjct: 245 RSLG-KQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMP-VKDVVSWNAMV 302

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
                                               YS   R+++A++L ++M+E K+K
Sbjct: 303 AG----------------------------------YSQIGRFEDAVRLFEQMQEEKIK 327


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/533 (35%), Positives = 291/533 (54%), Gaps = 11/533 (2%)

Query: 80  NPQVYLYN-FIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKA--CWQSQSLRVG 136
           NP V  +  FI     +A PL A++ +  ML  GL PN +T P   KA  C   +   VG
Sbjct: 73  NPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVG 132

Query: 137 QQVHAYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            Q+HA +++   L  + +V    M +Y   G +    +LF   + P   R++++W  ++ 
Sbjct: 133 PQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFE--EMPN--RNVIAWNAVMT 188

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
             V    P E   ++F + +A   P+ + +    +AC+    LSLG + H ++    F++
Sbjct: 189 NAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDM 248

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             DV + NA++D Y KC     AR VFD M V+N VSW SMI      G  ++AL ++  
Sbjct: 249 --DVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMG 306

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
            +  G +P DF +  VL +CA +  L  G+ +H    ++ I+ + F+ +ALVDMY KCG 
Sbjct: 307 ARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGG 366

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLS 434
           ++ A  VF  M  R++ ++ AMI G A  G A  AL +F  M + G   P+ +T V V++
Sbjct: 367 VEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVIT 426

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           ACS  GL ++G + F  M   + ++P+TEHY C+VDL GRAG+   A ++I+ MP+ P  
Sbjct: 427 ACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSI 486

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            VWGALLGACK+H K EL  I  E L   +P+  G ++L++N+ +S  RW EA  +RK+M
Sbjct: 487 SVWGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEM 546

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K   +KK PGCS +      + F   D  H +  EI  LL ++  Q +  GY+
Sbjct: 547 KNVGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYM 599



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 115/270 (42%), Gaps = 13/270 (4%)

Query: 255 LSPDV--FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           LSP +  FI   L+++Y K     +A       P   VVS+ + I+G     +   AL  
Sbjct: 39  LSPGLPPFICAHLVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGAAQHARPLAALSA 98

Query: 313 FRRMQGLGLKPDDFTLVCVLN--SCANIGWLELGKWVHTY-LDKNHINTDGFIGNALVDM 369
           F  M  +GL+P+DFT        +CA      +G  +H   L   ++  D F+  A +DM
Sbjct: 99  FAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDM 158

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           Y K G +  A  +F  M  R+V ++ A++    I G+  +    +  + + G  P+ V+ 
Sbjct: 159 YFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSV 218

Query: 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR---AGLIREALDLIK 486
               +AC+ A  +  G + F                  MVD +G+   AG  R   D ++
Sbjct: 219 CAFFNACAGAMFLSLG-EQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMR 277

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIV 516
               V ++  W +++ A   H   E A  V
Sbjct: 278 ----VRNSVSWCSMIVAYAQHGAEEDALAV 303


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 197/567 (34%), Positives = 294/567 (51%), Gaps = 8/567 (1%)

Query: 41  KQFHAFIIKTGSPQH---QTQIL--YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           K  HA I+  G   H    T +L  Y K+ S+     + N+  ++ QV     I  C SN
Sbjct: 187 KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN 246

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
              LEA  L+  M      PN YTL  V KA  +   + +G++V   + +  +  NV V 
Sbjct: 247 GLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVG 306

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
             L+ +Y+ CG +     +F              W  +I  Y +     EA+  +  MCQ
Sbjct: 307 TALIDMYSKCGSLHDARSVFDTNFINCGVN--TPWNAMISGYSQSGCSQEALELYVQMCQ 364

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             +  D      V +A +    L  G  +H  +     +L   V ++NA+ D Y KCG +
Sbjct: 365 NGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMV-VSVNNAIADAYSKCGFL 423

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
              RKVFD M  +++VSW +++   +     +EAL  F  M+  G  P+ FT   VL SC
Sbjct: 424 EDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISC 483

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A++ +LE G+ VH  L K  ++T+  I +AL+DMYAKCG I +A  VF  +   D+ S+T
Sbjct: 484 ASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWT 543

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           A+I G A HG    AL +F  M   GI+ + VT + VL ACSH G+VEEG  +F  M   
Sbjct: 544 AIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDG 603

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEI 515
           Y + P+ EHY C++DL GR G + +A++ I+ MP+ P+  VW  LLG C++H  VEL EI
Sbjct: 604 YGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEI 663

Query: 516 VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFY 575
               ++   PE    Y+L++N Y     +++ L LR  MK++ VKK PG S + V G  +
Sbjct: 664 AARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVH 723

Query: 576 EFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           +F  GD+ HP+  EIY  L+E+  + K
Sbjct: 724 KFYSGDQQHPQKKEIYVKLEELREKIK 750



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 232/495 (46%), Gaps = 32/495 (6%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIE---NLSLQNPQVYLYNFIIQ 91
           S+ + K  H  ++K+        +L++    + S+ +E      +  + PQ  ++++ + 
Sbjct: 79  SIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVM 138

Query: 92  CLSNANP---LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
            + +       +    + EML  G+LP+ +    ++++C    SL +G+ VHA  +    
Sbjct: 139 IVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGF 198

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            ++++V  +L+ +YA  G I+  + +F+       + + VSW  +I          EA  
Sbjct: 199 ATHIFVSTSLLNMYAKLGSIEDSYWVFNM----MTEHNQVSWNAMISGCTSNGLHLEAFD 254

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F  M      P+   LV V  A  KL D+++G ++    ++    +  +V +  ALIDM
Sbjct: 255 LFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASE--LGIEGNVLVGTALIDM 312

Query: 269 YLKCGNIPSARKVFDEMPVKNVVS--WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           Y KCG++  AR VFD   +   V+  WN+MI+G +  G  +EAL+++ +M   G+  D +
Sbjct: 313 YSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLY 372

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF-IGNALVDMYAKCGRIDQAFGVFRS 385
           T   V N+ A    L+ G+ VH  + K  ++     + NA+ D Y+KCG ++    VF  
Sbjct: 373 TYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDR 432

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
           M+ RD+ S+T ++   +      +AL  F  M + G  P++ TF  VL +C+    +E G
Sbjct: 433 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 492

Query: 446 -------CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
                  CK  LD  +             ++D++ + G I EA  +   +   PD   W 
Sbjct: 493 RQVHGLLCKAGLDTEKCIE--------SALIDMYAKCGSITEAGKVFDKIS-NPDIVSWT 543

Query: 499 ALLGACKIHAKVELA 513
           A++     H  VE A
Sbjct: 544 AIISGYAQHGLVEDA 558



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 119/257 (46%), Gaps = 1/257 (0%)

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           L+ VL  C++ G +     +H  +  ++F     + + N    +Y KC    +A  VFDE
Sbjct: 67  LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 126

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           MP +NV SW  MI G T  G F +    F  M   G+ PD F    ++ SC  +  LELG
Sbjct: 127 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELG 186

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           K VH  +      T  F+  +L++MYAK G I+ ++ VF  M   +  S+ AMI G   +
Sbjct: 187 KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN 246

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G   +A D+F  M      P+  T V V  A      V  G K   + +    ++     
Sbjct: 247 GLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMG-KEVQNCASELGIEGNVLV 305

Query: 465 YGCMVDLFGRAGLIREA 481
              ++D++ + G + +A
Sbjct: 306 GTALIDMYSKCGSLHDA 322


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/524 (36%), Positives = 309/524 (58%), Gaps = 48/524 (9%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC--GLIKAVHKLFHFRQ 179
           + L++C   +S+   +Q HA+ + T L+ +    N L+++      G +   H+LF   Q
Sbjct: 20  FSLESC---KSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFD--Q 74

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILS---FFDMCQ-ANLRPDGMILVIVLSACS-- 233
            P+   D+  + T+I+A+  +  PT +  S   F  M + +   P+    V V  AC   
Sbjct: 75  IPKP--DVFIYNTMIKAHAVI--PTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNG 130

Query: 234 ---------KLGDLSLGIKIHRYITDN------------------HFNLSPDVFIHNALI 266
                    ++  + +G++ + ++T+                    ++L  D++  N +I
Sbjct: 131 LGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMI 190

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
             Y+  G I  A+++FDEM  ++VVSW ++IAG    G FKEALD+F  M   G  P++F
Sbjct: 191 GGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEF 250

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR-- 384
           TL   L +CAN+  L+ G+W+H Y+DK+ I  +  +  +L+DMYAKCG ID A  VF   
Sbjct: 251 TLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDE 310

Query: 385 -SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             +K + V+ + AMI G A+HGK+ +A+D+F +M    + P++VTFV +L+ACSH  LVE
Sbjct: 311 YGLKLK-VWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVE 369

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG  +F  M+  Y ++P+ EHYGCMVDL GR+GL++EA + + +MP+ PDA +WGALLGA
Sbjct: 370 EGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGA 429

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C+IH  +E  + + + +   + +  G ++L+ N+YS+  +W EA  +R+K++    KKTP
Sbjct: 430 CRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTP 489

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GCS +E+ G F++F  GD+SHP+T ++Y  LDE+  + KN GY+
Sbjct: 490 GCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYV 533



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/433 (29%), Positives = 209/433 (48%), Gaps = 55/433 (12%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQNPQ 82
           LES KS+ Q+KQ HA +I TG   H   I  +K++ +   +   +LS        +  P 
Sbjct: 22  LESCKSMNQIKQTHAHLITTGLILHP--ITANKLLKVLIASSFGSLSYAHQLFDQIPKPD 79

Query: 83  VYLYNFIIQC--LSNANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           V++YN +I+   +   +   ++ ++  M+ + G LPN YT  +V KAC     +  G+Q+
Sbjct: 80  VFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQI 139

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ----------------- 182
             +++K  L SN++V N ++R+YA  GL+    ++F +                      
Sbjct: 140 RVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEI 199

Query: 183 ----------AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
                     ++RD+VSWTT+I  YV++    EA+  F +M Q    P+   L   L+AC
Sbjct: 200 GRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAAC 259

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF-DEMPVK-NV 290
           + L  L  G  IH YI  +   ++  +    +L+DMY KCG I  A KVF DE  +K  V
Sbjct: 260 ANLVALDQGRWIHVYIDKSEIKMNERLLA--SLLDMYAKCGEIDFAAKVFHDEYGLKLKV 317

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
             WN+MI G    G+ KEA+D+F +M+   + P+  T V +LN+C++   +E G+     
Sbjct: 318 WPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKS 377

Query: 351 LDKNH-INTDGFIGNALVDMYAKCGRIDQA-FGVFRSMKCRDVYSYTAMIVGLAIH---- 404
           +  ++ I  +      +VD+  + G + +A   VF      D   + A++    IH    
Sbjct: 378 MASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIE 437

Query: 405 -----GKAWKALD 412
                GK  K LD
Sbjct: 438 RGQRIGKIIKELD 450


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 190/581 (32%), Positives = 315/581 (54%), Gaps = 62/581 (10%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII---SLSRGNEIENL-----SLQNPQ 82
           L    S+   KQ HA I KTG   H   +++ K++   +++  + +           NP 
Sbjct: 9   LSKCSSLKPTKQIHAQICKTG--LHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPD 66

Query: 83  VYLYNFIIQCLS-NANPLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVH 140
            +++N +I+ LS +  PL ++  + ++  +  L P+++T  + LKA   S+ LR G Q+H
Sbjct: 67  TFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLH 126

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           + + +    ++++V  TL+ +YA CG   +  ++F     P    ++V+W          
Sbjct: 127 SQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEP----NVVTWNA-------- 174

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP--D 258
                                      VL+A  + GD+     +        F   P  +
Sbjct: 175 ---------------------------VLTAAFRCGDVEGAQDV--------FGCMPVRN 199

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           +   N ++  Y K G +  AR+VF EMP+++ VSW++MI G  H G F EA   FR +  
Sbjct: 200 LTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLR 259

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
             ++ ++ +L  VL++CA  G  E GK +H +++K      G + NAL+D Y+KCG +  
Sbjct: 260 EEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAM 319

Query: 379 AFGVFRSMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
           A  VF++M   R + S+T++I GLA+HG   +A+ +F EM + G+ PD +TF+ +L ACS
Sbjct: 320 ARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACS 379

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           H+GLVEEGC  F  M  +Y ++P  EHYGCMVDL+GRA  +++A + I  MP+ P+A +W
Sbjct: 380 HSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIW 439

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
             LLGAC IH  +E+AE+V   L   +P+  G ++L++N+Y+   +WK+   +R+ M E 
Sbjct: 440 RTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEH 499

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
            +KKTPG S++E+    Y F  G+K +  T E ++ L EIM
Sbjct: 500 SMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIM 540


>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 210/624 (33%), Positives = 327/624 (52%), Gaps = 47/624 (7%)

Query: 11  SRYNDINTFQQLSLL-------------HQSPRLESS----KSVGQLKQFHAFIIKTGSP 53
           SR N ++ F+ +SL+             H    L SS    KS+ + +Q H  II  G  
Sbjct: 73  SRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFE 132

Query: 54  QHQTQILYDKIISLSRGNEI--------ENLSLQNPQVYLYNFIIQC-LSNANPLEAIAL 104
           QH   IL  K+++      +        EN ++ +P  + +N +I   + N    +A++ 
Sbjct: 133 QHP--ILVPKLVTFYSAFNLLVDAHVITENSNILHP--FPWNLLISSYVRNGFCQKALSA 188

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           Y++M+ KG+ P+ +T P VLKAC +   L  G++VH  S+  +L             YA 
Sbjct: 189 YKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHE-SINASL-------------YAS 234

Query: 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI 224
            G+     +LF        + +++ W T+   Y++      A+     M +     D + 
Sbjct: 235 MGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVA 294

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           L+I L ACS +GD  LG +IH +   + F     V   NALI MY +C ++  A  +F  
Sbjct: 295 LIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTV--KNALITMYSRCKDLKHAYLLFQL 352

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           M  K++++WNS+I+G  H  + +EA  + R M   G++P+  T+  VL  CA +  L+ G
Sbjct: 353 MEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHG 412

Query: 345 KWVHTYLDKNHINTDGFI-GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           K  H Y+ +     D  +  NALVDMYA+ G++ +A  VF  +  RD  +YT+MI G  +
Sbjct: 413 KEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGM 472

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
            G+   AL +F EM+   I+PD +T + VLSACSH+GLV +G   F  M  +Y L P  E
Sbjct: 473 QGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLE 532

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           H+ CM DLFGRAGL+ +A ++I++MP  P   +W  L+GAC+IH   E+ E   E L+  
Sbjct: 533 HFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEM 592

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           +PE  G Y+L+ N+Y++   W +  K+R  M++  V+K PGC+ V+V   F  F   D S
Sbjct: 593 KPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTS 652

Query: 584 HPKTLEIYKLLDEIMHQSKNHGYI 607
           +    EIY LL+ +    K  GYI
Sbjct: 653 NANADEIYPLLEGLTMVMKEAGYI 676


>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
          Length = 700

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/519 (35%), Positives = 301/519 (57%), Gaps = 12/519 (2%)

Query: 81  PQVYLYNFIIQCLSNANPLEAIALYREMLIKGLL--PNTYTLPYVLKACWQSQSLRVGQQ 138
           P  + YN  I+  +++ P  ++ L+  ML   +   P+ YTLP++L A  +  +  + + 
Sbjct: 79  PTAFTYNVTIRLFASSRPDTSLRLFLSMLRAEVRVRPDAYTLPFLLLAAARCPAPALARS 138

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
            HA   K  L  + +  ++L+ +Y+      A  ++F    H    RD+VSW ++++AY 
Sbjct: 139 AHALLEKIGLGDHDHTVHSLITMYSCLDDHLAARRVFDGISH----RDVVSWNSMVKAYE 194

Query: 199 K--MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           +  M    E +L    + +  + P+G+ L +VL+AC   G+L LG  +  ++      + 
Sbjct: 195 RAGMVAEVEGMLRSM-VTEGAVAPNGVTLAVVLTACRDAGNLVLGRWVEEWVRSA--GME 251

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D  I +AL+ MY KCG +  AR+VFD +  K+VV+WN+MI G    G   EA+ +F  M
Sbjct: 252 VDSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVVAWNAMITGYAQNGMSNEAIALFHSM 311

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +  GL PD  TLV VL+SCA +G L+LG  + TY  +  +  + ++G ALVDMYAKCG +
Sbjct: 312 REAGLCPDKITLVGVLSSCAAVGALKLGVELDTYAMRRGLYNNVYVGTALVDMYAKCGDL 371

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSA 435
           ++A  VF  M  ++  S+ A+I GLA +G+ + A+  F  M  + G++PD++TF+GVLSA
Sbjct: 372 EKATHVFGKMPFKNEASWNALICGLAFNGRGYDAIQQFELMRDEKGLQPDDITFIGVLSA 431

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           C HAGL+E G + F  ++ V+ + P+ EHY C+VDL  RAG + EA D I+ MP   DA 
Sbjct: 432 CVHAGLLEYGRQLFNSLTPVFKIIPRIEHYSCIVDLLARAGHLEEAWDFIEEMPGKVDAV 491

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           + GALL AC+     E+ E V+  +++ EP     Y++ + IY++ ++  E+ ++   M+
Sbjct: 492 MLGALLAACRKCKNTEVGERVINRIMKLEPSNSWNYVVSSKIYATSDKMDESARMIGLMR 551

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           ER V KTPGCS VEV G+  EF    +      ++Y+L+
Sbjct: 552 ERGVNKTPGCSWVEVNGKVLEFYASTEPQHGAEDMYQLM 590


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/531 (34%), Positives = 290/531 (54%), Gaps = 10/531 (1%)

Query: 79  QNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKG--LLPNTYTLPYVLKACWQSQSLRV 135
            N  V  +N +I   S   +  EA  L +EM I+G  +  N  T+  VL AC     LR 
Sbjct: 310 NNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRS 369

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            +++H YS +     +V + N  +  YA CG + +  K+FH        + + SW  LI 
Sbjct: 370 LKELHGYSFRHCF-QHVELSNAFILAYAKCGALNSAEKVFH----GIGDKTVSSWNALIG 424

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            + +   P +A+   F M  +  +PD   +  +L AC+ L  L  G +IH Y+  N   L
Sbjct: 425 GHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRN--GL 482

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             D F+  +L+  Y+ CG   SAR +FD M  KN+VSWN+MI+G +  G   E+L +FR+
Sbjct: 483 ETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRK 542

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
               G++  +  +V V  +C+ +  L LGK  H Y+ K     D F+G +++DMYAK G 
Sbjct: 543 SLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGC 602

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           I ++  VF  +K ++V S+ A+IV   IHG   +A++++  M +VG  PD  T++G+L A
Sbjct: 603 IKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMA 662

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           C HAGLVEEG K+F +M     ++P+ EHY C++D+  RAG + +AL L+  MP   D  
Sbjct: 663 CGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNR 722

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           +W +LL +C+    +E+ E V + L+  EP+    Y+L++N+Y+   +W    ++R+ MK
Sbjct: 723 IWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMK 782

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           E  ++K  GCS +EV G  Y F  GD   PK+ EI  +   +  +    GY
Sbjct: 783 EIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGY 833



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 149/547 (27%), Positives = 252/547 (46%), Gaps = 53/547 (9%)

Query: 86  YNFIIQCLS-NANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           +N +I   S N    ++  L  EML  +GLLP+  T+  +L  C     + +G  +H  +
Sbjct: 215 WNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLA 274

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K  L   V V N ++ +Y+ CG +      F         +++VSW T+I A+      
Sbjct: 275 VKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSF----VKNNNKNVVSWNTMISAFSLEGDV 330

Query: 204 TEA--ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
            EA  +L    +    ++ + + ++ VL AC     L    ++H Y   + F     V +
Sbjct: 331 NEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQ---HVEL 387

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
            NA I  Y KCG + SA KVF  +  K V SWN++I G    G  ++AL +  +M   G 
Sbjct: 388 SNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQ 447

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           +PD FT+  +L +CA++  L+ GK +H Y+ +N + TD F+G +L+  Y  CG+   A  
Sbjct: 448 QPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARV 507

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           +F  MK +++ S+ AMI G + +G  +++L +F +    GI+  E+  V V  ACS    
Sbjct: 508 LFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSA 567

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGC-MVDLFGRAGLI---------------------- 478
           +  G +    + +   LQ +    GC ++D++ ++G I                      
Sbjct: 568 LRLGKEAHGYVLKA--LQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAII 625

Query: 479 ---------REALDLIKSMPLV---PDAFVWGALLGACKIHAKVELAEIV---MENLVRF 523
                    +EA++L + M  V   PD F +  +L AC     VE        M+N    
Sbjct: 626 VAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLI 685

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           EP+ +  Y  + ++ +   R  +AL+L  +M E    +    SL+     F     G+K 
Sbjct: 686 EPKLE-HYACLIDMLARAGRLDDALRLVNEMPEEADNRIWS-SLLRSCRTFGALEIGEKV 743

Query: 584 HPKTLEI 590
             K LE+
Sbjct: 744 AKKLLEL 750



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 177/327 (54%), Gaps = 10/327 (3%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P+ +T P V+KAC     +R+G+ +H   +K  L+ +V+V N L+ +Y  CG +    K+
Sbjct: 144 PDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKV 203

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACS 233
           F F      + +LVSW ++I A+ +  +  ++     +M  +  L PD + +V +L  C+
Sbjct: 204 FDF----MPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCA 259

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
             G++ +G+ IH         LS +V ++NA++ MY KCG +  A+  F +   KNVVSW
Sbjct: 260 GEGEVDIGMGIHGLAV--KLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSW 317

Query: 294 NSMIAGLTHRGQFKEALDIFRRM--QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           N+MI+  +  G   EA ++ + M  QG  +K ++ T++ VL +C +   L   K +H Y 
Sbjct: 318 NTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYS 377

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            + H      + NA +  YAKCG ++ A  VF  +  + V S+ A+I G A +G   KAL
Sbjct: 378 FR-HCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKAL 436

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSH 438
            +  +M+  G +PD  T   +L AC+H
Sbjct: 437 HLLFQMTYSGQQPDWFTISSLLLACAH 463



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 166/319 (52%), Gaps = 11/319 (3%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT-LMRLYAVCGLIKAVHKLFHFRQHP 181
           +L+AC   + +  G+++H +   +    N YV NT L+++YA+CG       +F   +  
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNME-- 106

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSL 240
              ++L+ W  L+  Y +     + +  F D+    + +PD      V+ AC  + D+ L
Sbjct: 107 --TKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRL 164

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G  IH  +      L  DVF+ NAL+ MY KCG +  A KVFD MP  N+VSWNSMI   
Sbjct: 165 GEVIHGMVI--KMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAF 222

Query: 301 THRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           +  G  +++ D+   M G  GL PD  T+V +L  CA  G +++G  +H    K  ++ +
Sbjct: 223 SENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEE 282

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             + NA+V MY+KCG +++A   F     ++V S+  MI   ++ G   +A ++  EM  
Sbjct: 283 VMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQI 342

Query: 420 VGIE--PDEVTFVGVLSAC 436
            G E   +EVT + VL AC
Sbjct: 343 QGEEMKANEVTILNVLPAC 361



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 152/292 (52%), Gaps = 11/292 (3%)

Query: 227 IVLSACSKLGDLSLGIKIHRYITDN-HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
           ++L AC    D+  G ++H++++D+ H+    D  ++  LI MY  CG+   +R VFD M
Sbjct: 48  LLLQACGNQKDIETGRRLHKFVSDSTHYR--NDYVLNTRLIKMYAMCGSPLDSRLVFDNM 105

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELG 344
             KN++ WN++++G T  G + + + +F  +      +PD+FT   V+ +C  I  + LG
Sbjct: 106 ETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLG 165

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           + +H  + K  +  D F+GNALV MY KCG +D+A  VF  M   ++ S+ +MI   + +
Sbjct: 166 EVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSEN 225

Query: 405 GKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQT 462
           G +  + D+  EM  + G+ PD VT V +L  C+  G V+ G   H L +     L  + 
Sbjct: 226 GFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVK--LGLSEEV 283

Query: 463 EHYGCMVDLFGRAGLIREA-LDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
                MV ++ + G + EA +  +K+     +   W  ++ A  +   V  A
Sbjct: 284 MVNNAMVYMYSKCGYLNEAQMSFVKNNN--KNVVSWNTMISAFSLEGDVNEA 333


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 171/481 (35%), Positives = 285/481 (59%), Gaps = 6/481 (1%)

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           L  +L+ C +++    G+  H   ++  L ++    N LM +Y+ CGLI+   K+F   +
Sbjct: 1   LHSLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFD--E 58

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
            P+  R +VSW  +I   V+     +AI  F +M +         +  V+ AC+  GD+ 
Sbjct: 59  IPE--RSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVF 116

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
              ++H +       +  DVF+  ALID+Y KCG+I  A  VF+ MP +N V+W+S++AG
Sbjct: 117 FCRQLHAFAIKA--VVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAG 174

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
                 ++E L +F R + +GL+ + F +  V+ +CA +  L  G+ VH  + +     +
Sbjct: 175 FVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPN 234

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
            F+ +ALVDMYAKCG I++A+ +F +++ ++V  + A+I G A H  + + +++F EM Q
Sbjct: 235 NFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQ 294

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G++PDEVT+V VLSAC H GLV++G  +F  M+R +N+ P   HY CMVD+ GR GL+ 
Sbjct: 295 TGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVH 354

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA +L+  MP    A +WG+LL +C+IH  +ELAEI  +NL   EP+  G Y+L+ N Y+
Sbjct: 355 EAHELMTKMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYA 414

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
           +  +W+EA K RK +K  ++ K  G S +E+  + + F  G+++HP+  +IY  L+ ++ 
Sbjct: 415 ASKKWEEAAKARKSLKGSEILKERGKSWIEIKDKVHTFMAGERTHPRITDIYLELNNLLE 474

Query: 600 Q 600
           +
Sbjct: 475 E 475



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 171/323 (52%), Gaps = 9/323 (2%)

Query: 86  YNFII-QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I  C+ N    +AI ++ EM  +G   + +T+  V+ AC     +   +Q+HA+++
Sbjct: 67  WNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAI 126

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K  + ++V+V   L+ +YA CG I+    +F        +R+ V+W++++  +V+ +   
Sbjct: 127 KAVVDADVFVGTALIDVYAKCGSIEDASCVF----EGMPERNDVTWSSIVAGFVQNELYE 182

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           E ++ F    +  L  +  ++  V+ AC+ L  L  G ++H  +    F   P+ F+ +A
Sbjct: 183 EGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGF--GPNNFVASA 240

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L+DMY KCG+I  A  +F  +  KNVV WN++I+G        E +++F  MQ  G++PD
Sbjct: 241 LVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPD 300

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVF 383
           + T V VL++C ++G ++ G+     + + H ++ +    + +VD+  + G + +A  + 
Sbjct: 301 EVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELM 360

Query: 384 RSMKCRDVYS-YTAMIVGLAIHG 405
             M      S + +++    IHG
Sbjct: 361 TKMPFAATASMWGSLLASCRIHG 383



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 6/211 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E + L+      GL  N + +  V++AC    +L  G+QVHA   +T    N +V + L+
Sbjct: 183 EGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALV 242

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I+  + LF   +    ++++V W  +I  + K    +E +  F +M Q  ++
Sbjct: 243 DMYAKCGSIEEAYVLFCNIE----KKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQ 298

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  V VLSAC  +G +  G      +T  H N+SP+V  ++ ++D+  + G +  A 
Sbjct: 299 PDEVTYVAVLSACVHVGLVDKGRSYFDLMTREH-NVSPNVLHYSCMVDILGRGGLVHEAH 357

Query: 280 KVFDEMPVKNVVS-WNSMIAGLTHRGQFKEA 309
           ++  +MP     S W S++A     G  + A
Sbjct: 358 ELMTKMPFAATASMWGSLLASCRIHGNLELA 388


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 195/577 (33%), Positives = 314/577 (54%), Gaps = 24/577 (4%)

Query: 30  RLESSKSVGQLKQFHAFIIKTG----SPQHQTQILYDKIISLSRGNEIENL--------S 77
           RL + +S     Q HA ++ +G    SP   +  L   + S+     + ++        +
Sbjct: 16  RLRACRSASHALQCHALLLTSGHLAASPLRLSNHLLLALASVPSAAALADVVFARLPLPA 75

Query: 78  LQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
            ++P  + +N  I+  + A P  A+  +  M   G+ P+ YT P VLKAC  +   R G 
Sbjct: 76  ARDP--FAWNTAIRLHAPARPRAALLYFARMRRCGVRPDAYTFPAVLKACGCAPGCRAGL 133

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
            VHA +++  L ++++  N L+  Y     I++  K+F   +     RDLVSW +++  Y
Sbjct: 134 LVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFD--EAGGVSRDLVSWNSMVAGY 191

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           V       A   F +M Q     D      ++    K G    G+   R + D       
Sbjct: 192 VGCGEMGLAQEMFDEMPQ----KDTFSWATLIDGYGKQG--GAGVDRARELFDQMPE--R 243

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           D+   N++ID Y + G +  AR +F+EMP +NV+SW+ +I G    G+ KEAL+ F+ M 
Sbjct: 244 DLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSML 303

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             GL+PD    V  +++CA +G LE G+W+H+YL+K  + +D  +  AL+DMY KCG +D
Sbjct: 304 RCGLRPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLD 363

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A  +F SM  R V ++  MIVGL  HG    A+ +F  M    +  D+++ +G+L+AC+
Sbjct: 364 LAMLIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACT 423

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAGLV EG + F  M + + + P+ EHYG +VDL GRAG + +A   I++MP+ P   +W
Sbjct: 424 HAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELW 483

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           G+LL AC+ H+ VELAE+ +E L     +  G Y+L++NIY+ +  W + L++RK M + 
Sbjct: 484 GSLLAACRSHSCVELAELSVERLADLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDE 543

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
            ++K  G S++EV GE +EF  G  S+    E+Y +L
Sbjct: 544 GMRKDIGRSVIEVDGEIHEFVNGVGSYICKDEMYLML 580


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 306/554 (55%), Gaps = 30/554 (5%)

Query: 68  SRGNEIEN--LSLQNP----QVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTL 120
           SR N++E   L  ++P     V+ YN II   ++N    +    Y+ M   G++P+ +T 
Sbjct: 21  SRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVMPDKFTF 80

Query: 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH 180
           P V++AC +   +R   ++H    K  L  NV+V + L+  Y      +   K+F   + 
Sbjct: 81  PCVVRACCEFMEVR---KIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVF--EEL 135

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
           P+  RD+V W  +I  Y K+ +  +A++ F  M +  +         +LS  + +GD++ 
Sbjct: 136 PE--RDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINN 193

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G  IH  +T      S  V + NALIDMY KC +   A  +F+ +  K++ SWNS+I+  
Sbjct: 194 GRAIHGIVTK--MGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAH 251

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY-----LDKNH 355
                    L +F +M G  + PD  T+  VL +C+++  L  G+ +H Y     L KN 
Sbjct: 252 EQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNE 311

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
              D  + NA++DMYAKCG +  A  +F  M+ +DV S+  MI+G A+HG   +ALD+F 
Sbjct: 312 NGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFH 371

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
            M +  I+PD VTFVGVLSACSHAG V +G      M   + + P  EHY C++D+ GRA
Sbjct: 372 RMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRA 431

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE--GDGAYIL 533
           G + EA DL + +PL  +  +W ALLGAC++H   EL  +V E + + EP+  G G+YIL
Sbjct: 432 GHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQLEPKHCGSGSYIL 491

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
           M+++Y    R++EAL++R+ MKE+ VKKTPGCS +E+    Y F  GD++H +   +   
Sbjct: 492 MSSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWIELKDGLYVFSMGDRTHHELNALINC 551

Query: 594 L-------DEIMHQ 600
           L       DE+MH 
Sbjct: 552 LCGFGYFHDEVMHS 565



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 47/210 (22%)

Query: 358 TDGFIG-----NALVDMYAKCGRIDQAFGVFRS-MKCRDVYSYTAMIVGLAIHGKAWKAL 411
           T GFI       +L++MY++C ++++A  VFR     R+V++Y A+I G   +G A    
Sbjct: 3   TSGFIHLPSSITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGF 62

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
             +  M  VG+ PD+ TF  V+ AC            F+++ ++         +GC+   
Sbjct: 63  QFYKRMRSVGVMPDKFTFPCVVRACC----------EFMEVRKI---------HGCLF-- 101

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA- 530
                           M L  + FV  AL+         E AE V E L    PE D   
Sbjct: 102 ---------------KMGLELNVFVGSALVNTYLKVDGTEDAEKVFEEL----PERDVVL 142

Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           +  M N Y+      +A+ + K+M E  + 
Sbjct: 143 WNAMINGYTKIGHLNKAVVVFKRMGEEGIS 172


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/485 (38%), Positives = 278/485 (57%), Gaps = 9/485 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L++C   +++  G+Q+HA   +  +  N  +   L+ LY +C  +   H LF       
Sbjct: 7   LLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFD----RI 62

Query: 183 AQRDLVSWTTLIQAYVKMDYPTE-AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
           ++R+L  W  +I+ Y   + P E AI  ++ M    L PD      VL ACS L  +  G
Sbjct: 63  SKRNLFLWNVMIRGYA-WNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEG 121

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            KIH+ +  +   L  DVF+  ALIDMY KCG + SAR+VFD++  ++VV WNSM+A  +
Sbjct: 122 KKIHKDVIRS--GLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYS 179

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
             GQ  E+L + R M   GLKP + T V  + + A+ G L  GK +H Y  ++   ++  
Sbjct: 180 QNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDK 239

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           +  AL+DMYAK G ++ A  +F  ++ + V S+ AMI G A+HG A +ALD+F EM +  
Sbjct: 240 VKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGK 298

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
           + PD +TFVGVL+ACSH GL+ EG  HF  M   +N+ P  +HY CM+DL G  G + EA
Sbjct: 299 VLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEA 358

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
             LI  M + PDA VWGALL +CKIH  VE+ E+ +E LV  EP+  G Y++++N+Y+  
Sbjct: 359 YKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQA 418

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQS 601
            +W    +LR  M  + +KK+  CS +EV  + + F   D SHPK+  IY  L       
Sbjct: 419 GKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLM 478

Query: 602 KNHGY 606
           K  GY
Sbjct: 479 KEAGY 483



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 211/401 (52%), Gaps = 20/401 (4%)

Query: 35  KSVGQLKQFHAFIIKTG---SPQHQTQI--LYDKIISLSRGNEI-ENLSLQNPQVYLYNF 88
           K++   KQ HA I + G   +P   T++  LY    SL+  + + + +S +N  ++L+N 
Sbjct: 15  KAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRN--LFLWNV 72

Query: 89  IIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           +I+  +   P E AI+LY +M   GL+P+ +T P+VLKAC    ++  G+++H   +++ 
Sbjct: 73  MIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSG 132

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
           L S+V+V   L+ +YA CG +++  ++F        +RD+V W +++  Y +   P E++
Sbjct: 133 LESDVFVGAALIDMYAKCGCVESARQVF----DKIDERDVVCWNSMLATYSQNGQPDESL 188

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
                M    L+P     VI ++A +  G L  G ++H Y   + F  +  V    AL+D
Sbjct: 189 ALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKV--KTALMD 246

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY K G++  AR +F+ +  K VVSWN+MI G    G   EALD+F+ M+G  L PD  T
Sbjct: 247 MYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVL-PDHIT 305

Query: 328 LVCVLNSCANIGWLELGKW-VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
            V VL +C++ G L  GK    + +   +I         ++D+   CGR+++A+ +   M
Sbjct: 306 FVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEM 365

Query: 387 KCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
           +   D   + A++    IHG     +   +    V +EPD+
Sbjct: 366 RVEPDAGVWGALLHSCKIHGNV--EMGELALEKLVELEPDD 404


>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 178/465 (38%), Positives = 268/465 (57%), Gaps = 35/465 (7%)

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS--- 233
            R   +    +VSWTT I  Y K  +  +A   F  M +A + P+ +  + +LSAC+   
Sbjct: 46  LRHTTKYNDPIVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYP 105

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
               +S G  IH ++     +++ DV +  ALIDMY KCG + SAR  FD+M V+N+VSW
Sbjct: 106 SRSSISFGTAIHAHVRKLGLDIN-DVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSW 164

Query: 294 NSMIAGLTHRGQFK-------------------------------EALDIFRRMQGLGLK 322
           N+MI G    G+F+                               EAL+ FR MQ  G+ 
Sbjct: 165 NTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVA 224

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD  T++ V+ +CAN+G L LG WVH  +       +  + N+L+DMY++CG ID A  V
Sbjct: 225 PDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQV 284

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F  M  R + S+ ++IVG A++G A +AL  F+ M + G +PD V++ G L ACSHAGL+
Sbjct: 285 FDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLI 344

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
            EG + F  M RV  + P+ EHYGC+VDL+ RAG + EAL+++K+MP+ P+  + G+LL 
Sbjct: 345 GEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLA 404

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           AC+    + LAE VM  L+  +  GD  Y+L++NIY++  +W  A K+R++MKER ++K 
Sbjct: 405 ACRTQGNIGLAENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKK 464

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           PG S +E+    ++F  GDKSH +   IY  L+ +  + +  GYI
Sbjct: 465 PGFSSIEIDSSIHKFVSGDKSHEEKDHIYAALEFLSFELQLCGYI 509



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 166/344 (48%), Gaps = 42/344 (12%)

Query: 79  QNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ---SQSLRV 135
            +P V     I     + + ++A + + +M    + PN  T   +L AC       S+  
Sbjct: 53  NDPIVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISF 112

Query: 136 GQQVHAYSMKTAL-LSNVYVFNTLMRLYAVCGLIKAVHKLF------------------- 175
           G  +HA+  K  L +++V V   L+ +YA CG +++    F                   
Sbjct: 113 GTAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYM 172

Query: 176 ---HFRQHPQA-----QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
               F    Q       ++ +SWT LI  +VK DY  EA+  F +M  + + PD + ++ 
Sbjct: 173 RNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIA 232

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           V++AC+ LG L LG+ +HR +    F    +V + N+LIDMY +CG I  AR+VFD MP 
Sbjct: 233 VIAACANLGTLGLGLWVHRLVMTQDFR--NNVKVSNSLIDMYSRCGCIDLARQVFDRMPQ 290

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           + +VSWNS+I G    G   EAL  F  MQ  G KPD  +    L +C++ G +  G  +
Sbjct: 291 RTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRI 350

Query: 348 HTYLDK-----NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
             ++ +       I   G     LVD+Y++ GR+++A  V ++M
Sbjct: 351 FEHMKRVRRILPRIEHYG----CLVDLYSRAGRLEEALNVLKNM 390



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 135/315 (42%), Gaps = 57/315 (18%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+  +REM + G+ P+  T+  V+ AC    +L +G  VH   M     +NV V N+L+
Sbjct: 210 EALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLI 269

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ CG I    ++F        QR LVSW ++I  +       EA+  F  M +   +
Sbjct: 270 DMYSRCGCIDLARQVF----DRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFK 325

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PDG+     L ACS  G +  G++I  ++      + P +  +  L+D+Y + G +  A 
Sbjct: 326 PDGVSYTGALMACSHAGLIGEGLRIFEHMKRVR-RILPRIEHYGCLVDLYSRAGRLEEAL 384

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            V   MP                                  +KP++  L  +L +C   G
Sbjct: 385 NVLKNMP----------------------------------MKPNEVILGSLLAACRTQG 410

Query: 340 WLELGKWVHTYL-------DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            + L + V  YL       D N++         L ++YA  G+ D A  V R MK R + 
Sbjct: 411 NIGLAENVMNYLIELDSGGDSNYV--------LLSNIYAAVGKWDGANKVRRRMKERGIQ 462

Query: 393 ---SYTAMIVGLAIH 404
               ++++ +  +IH
Sbjct: 463 KKPGFSSIEIDSSIH 477



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 62/165 (37%), Gaps = 44/165 (26%)

Query: 378 QAFGVFRSMKCRD-VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           Q   +  + K  D + S+T  I      G   KA   F +M +  IEP+ +TF+ +LSAC
Sbjct: 42  QGLSLRHTTKYNDPIVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSAC 101

Query: 437 SH------------------------------AGLVE--------EGCKHFLDMSRVYNL 458
           +H                                L++        E  +   D   V NL
Sbjct: 102 AHYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNL 161

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
                 +  M+D + R G   +AL +   +P V +A  W AL+G 
Sbjct: 162 VS----WNTMIDGYMRNGKFEDALQVFDGLP-VKNAISWTALIGG 201


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 192/573 (33%), Positives = 317/573 (55%), Gaps = 19/573 (3%)

Query: 42  QFHAFIIKTGSPQHQTQILYDKIIS-LSRGNEIENL-----SLQNPQVYLYNFIIQC-LS 94
           Q HA ++K G    +  ++ + +IS LS+   + +      +++N     +N +I   + 
Sbjct: 224 QIHALVVKLGFETER--LVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVI 281

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N   LEA   +  M + G  P   T   V+K+C   + L + + +H  ++K+ L +N  V
Sbjct: 282 NGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNV 341

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
              LM     C  I     LF      Q+   +VSWT +I  Y++     +A+  F  M 
Sbjct: 342 LTALMVALTKCKEIDDAFSLFSLMHGVQS---VVSWTAMISGYLQNGDTDQAVNLFSLMR 398

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  ++P+      +L+    +       +IH  +   ++  S  V    AL+D ++K GN
Sbjct: 399 REGVKPNHFTYSTILTVQHAV----FISEIHAEVIKTNYEKSSSV--GTALLDAFVKIGN 452

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I  A KVF+ +  K+V++W++M+AG    G+ +EA  IF ++   G+KP++FT   ++N+
Sbjct: 453 ISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINA 512

Query: 335 C-ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           C A    +E GK  H Y  K  +N    + ++LV +YAK G I+ A  +F+  K RD+ S
Sbjct: 513 CTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVS 572

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           + +MI G A HG+A KAL++F EM +  +E D +TF+GV+SAC+HAGLV +G  +F  M 
Sbjct: 573 WNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMI 632

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
             +++ P  EHY CM+DL+ RAG++ +A+D+I  MP  P A VW  +L A ++H  +EL 
Sbjct: 633 NDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELG 692

Query: 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
           ++  E ++  EP+   AY+L++NIY++   W E + +RK M +R+VKK PG S +EV  +
Sbjct: 693 KLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNK 752

Query: 574 FYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            Y F  GD SHP +  IY  L E+  + ++ GY
Sbjct: 753 TYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGY 785



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 209/424 (49%), Gaps = 13/424 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+  +   GL P++YT+  VL  C  S +  VG+QVH   +K  L+ ++ V N+L+
Sbjct: 85  EALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLV 144

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y   G ++   ++F         RD+VSW +L+  Y    +  +    F  M     R
Sbjct: 145 DMYTKTGNVRDGRRVF----DEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYR 200

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD   +  V++A +  G +++G++IH  +         +  + N+LI M  K G +  AR
Sbjct: 201 PDYYTVSTVIAALANQGAVAIGMQIHALVVK--LGFETERLVCNSLISMLSKSGMLRDAR 258

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            VFD M  K+ VSWNSMIAG    GQ  EA + F  MQ  G KP   T   V+ SCA++ 
Sbjct: 259 VVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLK 318

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-CRDVYSYTAMI 398
            L L + +H    K+ ++T+  +  AL+    KC  ID AF +F  M   + V S+TAMI
Sbjct: 319 ELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMI 378

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G   +G   +A+++FS M + G++P+  T+  +L+   HA  + E     +      N 
Sbjct: 379 SGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV-QHAVFISEIHAEVIKT----NY 433

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +  +     ++D F + G I +A+ + + +    D   W A+L       + E A  +  
Sbjct: 434 EKSSSVGTALLDAFVKIGNISDAVKVFELIE-TKDVIAWSAMLAGYAQAGETEEAAKIFH 492

Query: 519 NLVR 522
            L R
Sbjct: 493 QLTR 496



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 159/328 (48%), Gaps = 7/328 (2%)

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
           F Q P   RDL     L+  Y + D   EA+  F  + ++ L PD   +  VLS C+   
Sbjct: 59  FDQTPL--RDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSF 116

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           + ++G ++H         L   + + N+L+DMY K GN+   R+VFDEM  ++VVSWNS+
Sbjct: 117 NGTVGEQVHCQCVK--CGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           + G +      +  ++F  MQ  G +PD +T+  V+ + AN G + +G  +H  + K   
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGF 234

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
            T+  + N+L+ M +K G +  A  VF +M+ +D  S+ +MI G  I+G+  +A + F+ 
Sbjct: 235 ETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNN 294

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN-LQPQTEHYGCMVDLFGRA 475
           M   G +P   TF  V+ +C  A L E G    L    + + L         ++    + 
Sbjct: 295 MQLAGAKPTHATFASVIKSC--ASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKC 352

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGA 503
             I +A  L   M  V     W A++  
Sbjct: 353 KEIDDAFSLFSLMHGVQSVVSWTAMISG 380



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 134/273 (49%), Gaps = 12/273 (4%)

Query: 242 IKIHRYITDNHFN--LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           ++I RY    H N  L   V   NA     L+  +   A+++FD+ P++++   N ++  
Sbjct: 19  LRIRRYQLHCHANPLLQSHVVALNA--RTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFR 76

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
            +   Q +EAL +F  +   GL PD +T+ CVL+ CA      +G+ VH    K  +   
Sbjct: 77  YSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHH 136

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             +GN+LVDMY K G +     VF  M  RDV S+ +++ G + +    +  ++F  M  
Sbjct: 137 LSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQV 196

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGC--MVDLFGRAG 476
            G  PD  T   V++A ++ G V  G + H L    V  L  +TE   C  ++ +  ++G
Sbjct: 197 EGYRPDYYTVSTVIAALANQGAVAIGMQIHAL----VVKLGFETERLVCNSLISMLSKSG 252

Query: 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           ++R+A  +  +M    D+  W +++    I+ +
Sbjct: 253 MLRDARVVFDNME-NKDSVSWNSMIAGHVINGQ 284


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 177/502 (35%), Positives = 276/502 (54%), Gaps = 6/502 (1%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    +AI L+ +M   G+ PN+     +L++C     L +G+Q+H++ ++  L +N+ V
Sbjct: 166 NGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITV 225

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
              +  +Y  CG ++    +F       A    V+WT L+  Y +      A+  F  M 
Sbjct: 226 ETAICNMYVRCGWLEGAKLVFDGMDAQNA----VTWTGLMVGYTQAKKLEVALELFARMA 281

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              +  D  +  IVL  C  L D  +G +IH +I         +V +   L+D Y+KCG+
Sbjct: 282 MEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIV--KLGAESEVSVGTPLVDFYVKCGD 339

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I SA + F  +   N VSW+++I+G +  G+ ++ + IF  ++  G+  + F    V  +
Sbjct: 340 IESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQA 399

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA    L +G   H    K  + +  +  +A+V MY+KCGR+D A   F S+   D  ++
Sbjct: 400 CAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAW 459

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           TA+I G A HG A +AL  F  M   G+ P+ VTF+ VL+ACSH+GLV E  ++   MSR
Sbjct: 460 TAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSR 519

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y ++P  +HY CM+D + RAGL++EAL+LI  MP  PDA  W +LLG C  H  ++L +
Sbjct: 520 DYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGK 579

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
           I  ENL R +P     YIL+ N+YS+  +W+EA  +RK M ER++KK   CS + V G+ 
Sbjct: 580 IAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQV 639

Query: 575 YEFRKGDKSHPKTLEIYKLLDE 596
           + F  GD+ HP+T  IY  L+E
Sbjct: 640 HRFVVGDRHHPQTEAIYSKLEE 661



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 136/528 (25%), Positives = 242/528 (45%), Gaps = 47/528 (8%)

Query: 65  ISLSRGNE-IENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPY 122
           +SL R +  I+   +Q  Q  L N  +  LS    L EA    +EM    +    ++   
Sbjct: 35  VSLKRSSSTIKTEKIQ--QGKLENLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQC 92

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           + +AC + +SL  G+ +H    +T    +  + N L+R+Y  CG    V K+F       
Sbjct: 93  LFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFD----EM 148

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
             ++LVSW  +I AY K     +AI  F DM  + +RP+  + + +L +C     L LG 
Sbjct: 149 LMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGK 208

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           +IH ++     N   ++ +  A+ +MY++CG +  A+ VFD M  +N V+W  ++ G T 
Sbjct: 209 QIHSHVIRAQLN--ANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQ 266

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
             + + AL++F RM   G++ D+F    VL  C  +   ++G+ +H+++ K    ++  +
Sbjct: 267 AKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSV 326

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           G  LVD Y KCG I+ A+  F  +   +  S++A+I G +  G+    + IF+ +   G+
Sbjct: 327 GTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGV 386

Query: 423 EPDEVTFVGVLSAC-----------SHAGLVEEGCKHFL----DMSRVYNL--------- 458
             +   +  V  AC           +H   ++ G   +L     M  +Y+          
Sbjct: 387 VLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARR 446

Query: 459 ------QPQTEHYGCMVDLFGRAGLIREALDLIKSMP---LVPDAFVWGALLGACKIHAK 509
                 +P    +  ++  +   G   EAL   + M    + P+A  + A+L AC     
Sbjct: 447 AFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGL 506

Query: 510 VELAEIVMENLVR---FEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
           V  A+  + ++ R    +P  D  Y  M + YS     +EAL+L  +M
Sbjct: 507 VAEAKQYLGSMSRDYGVKPTID-HYDCMIDTYSRAGLLQEALELINRM 553


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 198/587 (33%), Positives = 321/587 (54%), Gaps = 46/587 (7%)

Query: 26  HQSPRLESSKSVGQLKQFHA--FIIKTGSPQHQTQILYDKIISLSRGNEIENL--SLQNP 81
           H  P + +S ++ QL Q HA  F+    S       L     SL   +   ++     +P
Sbjct: 42  HFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHP 101

Query: 82  QVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            ++++N +I+ L+  +  E +++ +  ML   + P+  TLP+VLK+      + +G+ +H
Sbjct: 102 NLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLH 161

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              MK  L  + +V  +L+ +Y   G +    +LF   + PQ  +               
Sbjct: 162 GGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFD--ESPQRNK--------------- 204

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               E+IL               +  ++++ C K+GDLS    +   + +       +  
Sbjct: 205 ---AESIL---------------LWNVLINGCCKVGDLSKAASLFEAMPER------NAG 240

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
             N+LI+ +++ G++  AR++F +MP KNVVSW +MI G +  G  ++AL +F RM   G
Sbjct: 241 SWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEG 300

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           ++P+D T+V  L +C  IG L++G+ +H YL  N    +  IG ALVDMYAKCG I  A 
Sbjct: 301 VRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSAS 360

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF   K +D+ +++ MI G AIHG   +AL  F +M   GI PDEV F+ +L+ACSH+G
Sbjct: 361 RVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSG 420

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
            V++G   F  M   Y+++P  +HY  +VDL GRAG + EAL  I+SMP+ PD  +WGAL
Sbjct: 421 NVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGAL 480

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
             AC+ H  +E+AE+  E L++ EP+  G+Y+ ++N+Y++  RW++  ++R  MK R V+
Sbjct: 481 FCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVE 540

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K PG S +EV G+ + F  GD +H +  EI   L+EI   +K  GY+
Sbjct: 541 KDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYM 587


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 179/496 (36%), Positives = 285/496 (57%), Gaps = 11/496 (2%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           GL  ++ T   ++K C   +++  G  +  +         +++ N L+ +Y    L+   
Sbjct: 8   GLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDA 67

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
           H+LF   Q PQ  R+++SWTT+I AY K     +A+     M +  +RP+      VL A
Sbjct: 68  HQLFD--QMPQ--RNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
           C+ + D+ +   +H  I      L  DV++ +ALID++ K G    A  VFDEM   + +
Sbjct: 124 CNGMSDVRM---LHCGIIKE--GLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAI 178

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
            WNS+I G     +   AL++F+RM+  G   +  TL  VL +C  +  LELG   H ++
Sbjct: 179 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 238

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            K   + D  + NALVDMY KCG ++ A  VF  MK RDV +++ MI GLA +G + +AL
Sbjct: 239 VK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEAL 296

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
            +F  M   G +P+ +T VGVL ACSHAGL+E+G  +F  M ++Y + P  EHYGCM+DL
Sbjct: 297 KLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDL 356

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
            G+AG + +A+ L+  M   PDA  W  LLGAC++   + LAE   + ++  +PE  G Y
Sbjct: 357 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTY 416

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
            +++NIY++  +W    ++RK+M++  +KK PGCS +EV  + + F  GD+SHP+ +E+ 
Sbjct: 417 TVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVN 476

Query: 592 KLLDEIMHQSKNHGYI 607
           K L++++H+    GY+
Sbjct: 477 KKLNQLIHRLIGIGYV 492



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 174/346 (50%), Gaps = 18/346 (5%)

Query: 91  QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
           +C  +   LE + L   ML  G+ PN YT   VL+AC     +R+   +H   +K  L S
Sbjct: 91  KCKIHQKALELLVL---MLRDGVRPNVYTYSSVLRACNGMSDVRM---LHCGIIKEGLES 144

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           +VYV + L+ ++A  G  +    +F          D + W ++I  + +      A+  F
Sbjct: 145 DVYVRSALIDVFAKLGEPEDALSVF----DEMVTGDAIVWNSIIGGFAQNSRSDVALELF 200

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             M +A    +   L  VL AC+ L  L LG++ H +I         D+ ++NAL+DMY 
Sbjct: 201 KRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV----KYDQDLILNNALVDMYC 256

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG++  AR+VF++M  ++V++W++MI+GL   G  +EAL +F  M+  G KP+  T+V 
Sbjct: 257 KCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVG 316

Query: 331 VLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
           VL +C++ G LE G +    + K + IN        ++D+  K G++D A  +   M+C 
Sbjct: 317 VLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECE 376

Query: 390 -DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
            D  ++  ++    +       L  ++    + ++P++     VLS
Sbjct: 377 PDAVTWRTLLGACRVQRNM--VLAEYAAKKVIALDPEDAGTYTVLS 420



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 161/363 (44%), Gaps = 46/363 (12%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENLSLQNPQV-- 83
           S  L +   +  ++  H  IIK G  S  +    L D    L  G   + LS+ +  V  
Sbjct: 118 SSVLRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKL--GEPEDALSVFDEMVTG 175

Query: 84  --YLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
              ++N II   + N+    A+ L++ M   G +    TL  VL+AC     L +G Q H
Sbjct: 176 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 235

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
            + +K     ++ + N L+ +Y  CG ++   ++F    +   +RD+++W+T+I    + 
Sbjct: 236 VHIVKYD--QDLILNNALVDMYCKCGSLEDARRVF----NQMKERDVITWSTMISGLAQN 289

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
            Y  EA+  F  M  +  +P+ + +V VL ACS  G L  G    R +    + ++P   
Sbjct: 290 GYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK-KLYGINPGRE 348

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            +  +ID+  K G +  A K+ +EM  + + V+W +++     R Q    L  +   + +
Sbjct: 349 HYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC--RVQRNMVLAEYAAKKVI 406

Query: 320 GLKPDDFTLVCVLNSC-----------------ANIG--------WLELGKWVHTYL--D 352
            L P+D     VL++                   +IG        W+E+ K +H ++  D
Sbjct: 407 ALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGD 466

Query: 353 KNH 355
           ++H
Sbjct: 467 ESH 469



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 21/206 (10%)

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           +Q  GL  D  T   ++  C +   +  G  +  +L  N      F+ N L++MY K   
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL 63

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           ++ A  +F  M  R+V S+T MI   +      KAL++   M + G+ P+  T+  VL A
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123

Query: 436 CS--------HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
           C+        H G+++EG            L+        ++D+F + G   +AL +   
Sbjct: 124 CNGMSDVRMLHCGIIKEG------------LESDVYVRSALIDVFAKLGEPEDALSVFDE 171

Query: 488 MPLVPDAFVWGALLGACKIHAKVELA 513
           M +  DA VW +++G    +++ ++A
Sbjct: 172 M-VTGDAIVWNSIIGGFAQNSRSDVA 196


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 177/498 (35%), Positives = 280/498 (56%), Gaps = 33/498 (6%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           G+ P+ +T   +L  C   ++   G+Q+HA+ ++  +  N+ V   L+ +Y+ CG +   
Sbjct: 273 GIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYA 332

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
            ++F+      A+R+  SW ++I+ Y +     EA+  F  M    ++PD   L  +LS+
Sbjct: 333 KEIFN----RMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSS 388

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK--N 289
           C  L D   G ++H +I  N   +  +  +   L+DMY KCG++  A KV+D+   K  N
Sbjct: 389 CVSLSDSQKGRELHNFIVRN--TMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRN 446

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
              WNS++AG  ++G  KE+ + F  M    ++ D  T+V ++N                
Sbjct: 447 TALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLV------------- 493

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
                       +  ALVDMY+KCG I +A  VF +M  +++ S+ AMI G + HG + +
Sbjct: 494 ------------LETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKE 541

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           AL ++ EM + G+ P+EVTF+ +LSACSH GLVEEG + F  M   YN++ + EHY CMV
Sbjct: 542 ALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMV 601

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL GRAG + +A + ++ MP+ P+   WGALLGAC++H  +++  +  + L   +P+  G
Sbjct: 602 DLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPG 661

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y++M+NIY++  RWKE   +R+ MK + VKK PG S +E+  E   F  G K+HPKT E
Sbjct: 662 PYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEE 721

Query: 590 IYKLLDEIMHQSKNHGYI 607
           IY  L  +  QSK  GYI
Sbjct: 722 IYNNLRHLTLQSKGLGYI 739



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 240/471 (50%), Gaps = 22/471 (4%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           +EA  ++  ML  G+ P+ +T    L+ C   +S   G+QVH+  +      + +V N L
Sbjct: 157 MEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNAL 216

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN- 217
           + +YA C   ++  K+F        +R+ V+W ++I A  +  +  +A++ F  M ++  
Sbjct: 217 IDMYAKCDDEESCLKVF----DEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESED 272

Query: 218 -LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            ++PD      +L+ C+   + + G +IH ++     N++ ++ +   L+ MY +CG + 
Sbjct: 273 GIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLI--RANITKNIIVETELVHMYSECGRLN 330

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A+++F+ M  +N  SWNSMI G    G+ +EAL +F++MQ  G+KPD F+L  +L+SC 
Sbjct: 331 YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCV 390

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--KCRDVYSY 394
           ++   + G+ +H ++ +N +  +G +   LVDMYAKCG +D A+ V+     K R+   +
Sbjct: 391 SLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALW 450

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-HAGLVE--EGCKHFLD 451
            +++ G A  G   ++ + F EM +  IE D +T V +++       LV+    C     
Sbjct: 451 NSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITK 510

Query: 452 MSRVY-NLQPQT-EHYGCMVDLFGRAGLIREALDLIKSMP---LVPDAFVWGALLGACKI 506
              V+ N+  +    +  M+  + + G  +EAL L + MP   + P+   + A+L AC  
Sbjct: 511 ARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSH 570

Query: 507 HAKVELAEIV---MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
              VE    +   M+     E + +  Y  M ++     R ++A +  +KM
Sbjct: 571 TGLVEEGLRIFTSMQEDYNIEAKAE-HYTCMVDLLGRAGRLEDAKEFVEKM 620



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 109/324 (33%), Positives = 168/324 (51%), Gaps = 13/324 (4%)

Query: 120 LPY--VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV---HKL 174
           LPY  +++ C  S S + G+ +H   +      + Y+   ++ LYA  G +  +    KL
Sbjct: 72  LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKL 131

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F        +R+L +W T+I AY ++D   EA   F  M +  + PD       L  C  
Sbjct: 132 FE----EMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGA 187

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           L     G ++H  +    F    D F+ NALIDMY KC +  S  KVFDEM  +N V+WN
Sbjct: 188 LRSRDGGKQVHSKLIACGF--KGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWN 245

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGL--GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           S+I+     G F +AL +F RMQ    G++PD FT   +L  CAN      G+ +H +L 
Sbjct: 246 SIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLI 305

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           + +I  +  +   LV MY++CGR++ A  +F  M  R+ YS+ +MI G   +G+  +AL 
Sbjct: 306 RANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALR 365

Query: 413 IFSEMSQVGIEPDEVTFVGVLSAC 436
           +F +M   GI+PD  +   +LS+C
Sbjct: 366 LFKQMQLNGIKPDCFSLSSMLSSC 389



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/466 (22%), Positives = 209/466 (44%), Gaps = 75/466 (16%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQH---QTQI--LYDKIISLSRGNEIENLSLQNPQVYLYN 87
           + ++  Q +Q HA +I+    ++   +T++  +Y +   L+   EI N  +     Y +N
Sbjct: 290 NQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFN-RMAERNAYSWN 348

Query: 88  FIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
            +I+    N    EA+ L+++M + G+ P+ ++L  +L +C      + G+++H + ++ 
Sbjct: 349 SMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN 408

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            +     +   L+ +YA CG +    K++   Q  +  R+   W +++  Y       E+
Sbjct: 409 TMEEEGILQVVLVDMYAKCGSMDYAWKVYD--QTIKKDRNTALWNSILAGYANKGLKKES 466

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
              F +M ++++  D + +V +++                            + +  AL+
Sbjct: 467 FNHFLEMLESDIEYDVLTMVTIVNL---------------------------LVLETALV 499

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           DMY KCG I  AR VFD M  KN+VSWN+MI+G +  G  KEAL ++  M   G+ P++ 
Sbjct: 500 DMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEV 559

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
           T + +L++C++ G +E G  + T + +++ I         +VD+  + GR++ A      
Sbjct: 560 TFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEK 619

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
           M                                   IEP+  T+  +L AC     ++ G
Sbjct: 620 MP----------------------------------IEPEVSTWGALLGACRVHKDMDMG 645

Query: 446 CKHFLDMSRVYNLQPQTEH-YGCMVDLFGRAGLIREALDLIKSMPL 490
               L   R++ L PQ    Y  M +++  AG  +E  D+ + M +
Sbjct: 646 ---RLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKM 688



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 160/351 (45%), Gaps = 41/351 (11%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG---NIPSARKVFDE 284
           ++  C        G  IH  +  N +N  PD ++   ++ +Y + G   ++  ARK+F+E
Sbjct: 77  LIQDCIDSNSFQRGKSIHTQMISNGYN--PDAYLMTKILMLYARSGCLDDLCYARKLFEE 134

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           MP +N+ +WN+MI        + EA  IF RM  +G+ PD+FT    L  C  +   + G
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGG 194

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           K VH+ L       D F+GNAL+DMYAKC   +    VF  M  R+  ++ ++I   A  
Sbjct: 195 KQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQF 254

Query: 405 GKAWKALDIFSEM--SQVGIEPDEVTFVGVLSACS-----------HAGLVEEG------ 445
           G    AL +F  M  S+ GI+PD+ TF  +L+ C+           HA L+         
Sbjct: 255 GHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNII 314

Query: 446 -----------CKHFLDMSRVYNLQPQTEHY--GCMVDLFGRAGLIREALDLIKSMPL-- 490
                      C        ++N   +   Y    M++ + + G  +EAL L K M L  
Sbjct: 315 VETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNG 374

Query: 491 -VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY-ILMTNIYS 539
             PD F   ++L +C   +  +    +   +VR   E +G   +++ ++Y+
Sbjct: 375 IKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYA 425


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 189/566 (33%), Positives = 299/566 (52%), Gaps = 33/566 (5%)

Query: 72  EIENLSLQNPQ--VYLYNFIIQCLSN-ANPLEAIALYREMLIK-GLLPNTYTLPYVLKAC 127
           ++E L    P+     YN +I   S+  +P  ++ LYR +L +  + P   TL  ++   
Sbjct: 97  DMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVA 156

Query: 128 WQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA---- 183
                  +G  VH   ++    +  +V + L+ +YA  GLI+   ++F   +        
Sbjct: 157 SALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYN 216

Query: 184 -----------------------QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
                                   RD ++WTT++    +     EA+  F  M    +  
Sbjct: 217 TLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGI 276

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D      +L+AC  L  L  G +IH YIT   +    +VF+ +AL+DMY KC +I  A  
Sbjct: 277 DQYTFGSILTACGALAALEEGKQIHAYITRTWYE--DNVFVGSALVDMYSKCRSIRLAEA 334

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VF  M  +N++SW +MI G       +EA+  F  MQ  G+KPDDFTL  V++SCAN+  
Sbjct: 335 VFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLAS 394

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           LE G   H     + +     + NALV +Y KCG I+ A  +F  M   D  S+TA++ G
Sbjct: 395 LEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTG 454

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
            A  GKA + +D+F +M   G++PD VTF+GVLSACS AGLVE+GC +F  M + + + P
Sbjct: 455 YAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVP 514

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
             +HY CM+DL+ R+G  +EA + IK MP  PDAF W  LL +C++   +E+ +   ENL
Sbjct: 515 IDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENL 574

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
           +  +P+   +Y+L+ +++++K +W E   LR+ M++R+VKK PGCS ++   + + F   
Sbjct: 575 LETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSAD 634

Query: 581 DKSHPKTLEIYKLLDEIMHQSKNHGY 606
           D+SHP +  IY+ L+ +  +    GY
Sbjct: 635 DQSHPFSSRIYEKLEWLNSKMAEEGY 660



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/511 (28%), Positives = 229/511 (44%), Gaps = 85/511 (16%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P T+ L ++L A  +S  L   ++V           N++  N L+   A   L+  + +L
Sbjct: 46  PPTFLLNHLLTAYAKSGRLARARRV----FDEMPDPNLFTRNALLSALAHSRLVPDMERL 101

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACS 233
           F        +RD VS+  LI  +     P  ++  +  +  + ++RP  + L  ++   S
Sbjct: 102 FA----SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVAS 157

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV-- 291
            L D +LG  +H  +           F+ + L+DMY K G I  AR+VF EM  K VV  
Sbjct: 158 ALSDRALGHSVHCQVL--RLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMY 215

Query: 292 -----------------------------SWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
                                        +W +M+ GLT  G   EALD+FRRM+  G+ 
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVG 275

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            D +T   +L +C  +  LE GK +H Y+ +     + F+G+ALVDMY+KC  I  A  V
Sbjct: 276 IDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAV 335

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           FR M CR++ S+TAMIVG   +  + +A+  FSEM   GI+PD+ T   V+S+C++   +
Sbjct: 336 FRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASL 395

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           EEG + F  ++ V  L         +V L+G+ G I +A  L   M    D   W AL+ 
Sbjct: 396 EEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVT 453

Query: 503 A----CKIHAKVELAEIVMENLVRFEPEG------------------------------- 527
                 K    ++L E ++ N ++  P+G                               
Sbjct: 454 GYAQFGKAKETIDLFEKMLANGLK--PDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHG 511

Query: 528 ----DGAYILMTNIYSSKNRWKEALKLRKKM 554
               D  Y  M ++YS   R+KEA +  K+M
Sbjct: 512 IVPIDDHYTCMIDLYSRSGRFKEAEEFIKQM 542



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 182/371 (49%), Gaps = 35/371 (9%)

Query: 54  QHQTQILYDKIIS-LSRGNEIEN------LSLQNPQVYLYNFIIQCLSNANPLEAIALYR 106
           + +T ++Y+ +I+ L R   IE+      L +    +     +     N   LEA+ ++R
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 107 EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
            M  +G+  + YT   +L AC    +L  G+Q+HAY  +T    NV+V + L+ +Y+ C 
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
            I+    +F         R+++SWT +I  Y +     EA+ +F +M    ++PD   L 
Sbjct: 328 SIRLAEAVF----RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLG 383

Query: 227 IVLSACSKLGDLSLGIKIH---------RYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
            V+S+C+ L  L  G + H         RYIT           + NAL+ +Y KCG+I  
Sbjct: 384 SVISSCANLASLEEGAQFHCLALVSGLMRYIT-----------VSNALVTLYGKCGSIED 432

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A ++FDEM   + VSW +++ G    G+ KE +D+F +M   GLKPD  T + VL++C+ 
Sbjct: 433 AHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSR 492

Query: 338 IGWLELGKWVHTYLDKNH--INTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-CRDVYSY 394
            G +E G      + K+H  +  D      ++D+Y++ GR  +A    + M    D + +
Sbjct: 493 AGLVEKGCDYFDSMQKDHGIVPIDDHY-TCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGW 551

Query: 395 TAMIVGLAIHG 405
             ++    + G
Sbjct: 552 ATLLSSCRLRG 562



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 146/357 (40%), Gaps = 47/357 (13%)

Query: 41  KQFHAFIIKTGSPQH-----QTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           KQ HA+I +T    +         +Y K  S+     +         +     I+    N
Sbjct: 298 KQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQN 357

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           A   EA+  + EM + G+ P+ +TL  V+ +C    SL  G Q H  ++ + L+  + V 
Sbjct: 358 ACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS 417

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ LY  CG I+  H+LF       +  D VSWT L+  Y +     E I  F  M  
Sbjct: 418 NALVTLYGKCGSIEDAHRLF----DEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLA 473

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             L+PDG+  + VLSACS+ G +  G      +  +H  + P    +  +ID+Y + G  
Sbjct: 474 NGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDH-GIVPIDDHYTCMIDLYSRSGRF 532

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A +   +MP                                    PD F    +L+SC
Sbjct: 533 KEAEEFIKQMP----------------------------------HSPDAFGWATLLSSC 558

Query: 336 ANIGWLELGKW-VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
              G +E+GKW     L+ +  N   ++   L  M+A  G+  +   + R M+ R V
Sbjct: 559 RLRGNMEIGKWAAENLLETDPQNPASYV--LLCSMHAAKGQWTEVAHLRRGMRDRQV 613


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 184/524 (35%), Positives = 293/524 (55%), Gaps = 10/524 (1%)

Query: 78  LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRV 135
           L+ P +  ++ ++     N +P +A+  +R M++   + P+  TL  ++ AC +  + R+
Sbjct: 103 LEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRL 162

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G+ VH + ++    +++ + N+L+  YA     K    LF       A++D++SW+T+I 
Sbjct: 163 GRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKM----IAEKDVISWSTVIA 218

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            YV+     EA+L F DM      P+   ++ VL AC+   DL  G K H         L
Sbjct: 219 CYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRK--GL 276

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             +V +  AL+DMY+KC +   A  VF  +P K+VVSW ++I+G T  G    +++ F  
Sbjct: 277 ETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSI 336

Query: 316 MQ-GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           M      +PD   +V VL SC+ +G+LE  K  H+Y+ K   +++ FIG +LV++Y++CG
Sbjct: 337 MLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCG 396

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVL 433
            +  A  VF  +  +D   +T++I G  IHGK  KAL+ F+ M +   ++P+EVTF+ +L
Sbjct: 397 SLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSIL 456

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SACSHAGL+ EG + F  M   Y L P  EHY  +VDL GR G +  A+++ K MP  P 
Sbjct: 457 SACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPT 516

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
             + G LLGAC+IH   E+AE V + L   E    G Y+LM+N+Y  K  W+   KLR  
Sbjct: 517 PQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNS 576

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           +K+R +KK    SL+E+  + + F   D+ HP+   +Y LL E+
Sbjct: 577 VKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLKEL 620



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/433 (29%), Positives = 225/433 (51%), Gaps = 14/433 (3%)

Query: 82  QVYLYNFIIQCLSNANPLEAIAL-YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            +Y +N +++ LS     E +   +  M      P+ +TLP  LKAC + + +  G+ +H
Sbjct: 5   SLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIH 64

Query: 141 AYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
            +  K   L S++YV ++L+ +Y  CG +    ++F   + P    D+V+W++++  + K
Sbjct: 65  GFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKP----DIVTWSSMVSGFEK 120

Query: 200 MDYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
              P +A+  F  M  A ++ PD + L+ ++SAC+KL +  LG  +H ++    F  S D
Sbjct: 121 NGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGF--SND 178

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           + + N+L++ Y K      A  +F  +  K+V+SW+++IA     G   EAL +F  M  
Sbjct: 179 LSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMD 238

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G +P+  T++CVL +CA    LE G+  H    +  + T+  +  ALVDMY KC   ++
Sbjct: 239 DGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEE 298

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACS 437
           A+ VF  +  +DV S+ A+I G  ++G A ++++ FS M  +    PD +  V VL +CS
Sbjct: 299 AYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCS 358

Query: 438 HAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
             G +E+  C H   +   ++  P       +V+L+ R G +  A  +   + L  D  V
Sbjct: 359 ELGFLEQAKCFHSYVIKYGFDSNPFIG--ASLVELYSRCGSLGNASKVFNGIAL-KDTVV 415

Query: 497 WGALLGACKIHAK 509
           W +L+    IH K
Sbjct: 416 WTSLITGYGIHGK 428



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 191/365 (52%), Gaps = 17/365 (4%)

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            +R L  W TL+++  +     E +  F  M +   +PD   L + L AC +L +++ G 
Sbjct: 2   TKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGE 61

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            IH ++  +   L  D+++ ++LI MY+KCG +  A ++FDE+   ++V+W+SM++G   
Sbjct: 62  MIHGFVKKD-VTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEK 120

Query: 303 RGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
            G   +A++ FRRM     + PD  TL+ ++++C  +    LG+ VH ++ +   + D  
Sbjct: 121 NGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLS 180

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           + N+L++ YAK     +A  +F+ +  +DV S++ +I     +G A +AL +F++M   G
Sbjct: 181 LVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDG 240

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
            EP+  T + VL AC+ A  +E+G K H L + +   L+ + +    +VD++ +     E
Sbjct: 241 TEPNVATVLCVLQACAAAHDLEQGRKTHELAIRK--GLETEVKVSTALVDMYMKCFSPEE 298

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKV-----ELAEIVMENLVRFEPEGDGAYILMT 535
           A  +   +P   D   W AL+    ++        E + +++EN  R  P+     ILM 
Sbjct: 299 AYAVFSRIPR-KDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTR--PDA----ILMV 351

Query: 536 NIYSS 540
            +  S
Sbjct: 352 KVLGS 356



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           M  +++  WN+++  L+   Q++E L  F  M     KPD+FTL   L +C  +  +  G
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYG 60

Query: 345 KWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           + +H ++ K+  + +D ++G++L+ MY KCGR+ +A  +F  ++  D+ ++++M+ G   
Sbjct: 61  EMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEK 120

Query: 404 HGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVYNLQPQ 461
           +G  ++A++ F  M     + PD VT + ++SAC+       G C H   + R ++    
Sbjct: 121 NGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFS--ND 178

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
                 +++ + ++   +EA++L K M    D   W  ++ AC + 
Sbjct: 179 LSLVNSLLNCYAKSRAFKEAVNLFK-MIAEKDVISWSTVI-ACYVQ 222


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 170/491 (34%), Positives = 291/491 (59%), Gaps = 6/491 (1%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           + +T+  VL  C +   L+  +++H YS +  L SN  V N  +  Y  CG + +  ++F
Sbjct: 306 DEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVF 365

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
                    + + SW  L+  Y +   P +A+  +  M  + L PD   +  +L ACS++
Sbjct: 366 DLMD----TKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 421

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
             L  G +IH +   N   L+ D FI  +L+ +Y+ CG   +A+ +FD M  +++VSWN 
Sbjct: 422 KSLHYGEEIHGFALRN--GLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNV 479

Query: 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH 355
           MIAG +  G   EA+++FR+M   G++P +  ++CV  +C+ +  L LGK +H +  K H
Sbjct: 480 MIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH 539

Query: 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           +  D F+ ++++DMYAK G I  +  +F  ++ +DV S+  +I G  IHG+  +AL++F 
Sbjct: 540 LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFE 599

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           +M ++G++PD+ TF G+L ACSHAGLVE+G ++F  M  ++N++P+ EHY C+VD+ GRA
Sbjct: 600 KMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRA 659

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535
           G I +AL LI+ MP  PD+ +W +LL +C+IH  + L E V   L+  EPE    Y+L++
Sbjct: 660 GRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLIS 719

Query: 536 NIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           N+++   +W +  ++R +MK+  ++K  GCS +EV G+ + F  GD+  P+  E+ +   
Sbjct: 720 NLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWR 779

Query: 596 EIMHQSKNHGY 606
            +  +  + GY
Sbjct: 780 RLEVKISSIGY 790



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 178/313 (56%), Gaps = 8/313 (2%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N++P +A+ LY +M   GL P+ +T+  +L AC + +SL  G+++H ++++  L  + ++
Sbjct: 386 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 445

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
             +L+ LY  CG   A   LF   +H    R LVSW  +I  Y +   P EAI  F  M 
Sbjct: 446 GISLLSLYICCGKPFAAQVLFDGMEH----RSLVSWNVMIAGYSQNGLPDEAINLFRQML 501

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              ++P  + ++ V  ACS+L  L LG ++H +    H  L+ D+F+ +++IDMY K G 
Sbjct: 502 SDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH--LTEDIFVSSSIIDMYAKGGC 559

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I  ++++FD +  K+V SWN +IAG    G+ KEAL++F +M  LGLKPDDFT   +L +
Sbjct: 560 IGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMA 619

Query: 335 CANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVY 392
           C++ G +E G ++ +  L+ ++I         +VDM  + GRID A  +   M    D  
Sbjct: 620 CSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSR 679

Query: 393 SYTAMIVGLAIHG 405
            +++++    IHG
Sbjct: 680 IWSSLLSSCRIHG 692



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 208/394 (52%), Gaps = 27/394 (6%)

Query: 51  GSPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLE-AIALYREML 109
           GSP   +++++DK              L+   ++ +N I+   +     E A++++ E++
Sbjct: 48  GSPS-DSRMVFDK--------------LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 92

Query: 110 -IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI 168
            +    P+ +TLP V+KAC     L +GQ +H  + K  L+S+V+V N L+ +Y  CGL+
Sbjct: 93  SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 152

Query: 169 KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC--QANLRPDGMILV 226
           +   K+F   +H   +R+LVSW ++I  + +  +  E+  +F +M   + +  PD   LV
Sbjct: 153 EEAVKVF---EH-MPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLV 208

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
            VL  C+   D+  G+ +H         L+ ++ ++N+LIDMY KC  +  A+ +FD+  
Sbjct: 209 TVLPVCAGEEDIEKGMAVHGLAV--KLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKND 266

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ--GLGLKPDDFTLVCVLNSCANIGWLELG 344
            KN+VSWNSMI G            + ++MQ     +K D+FT++ VL  C     L+  
Sbjct: 267 KKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSL 326

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           K +H Y  ++ + ++  + NA +  Y +CG +  +  VF  M  + V S+ A++ G A +
Sbjct: 327 KELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQN 386

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
               KALD++ +M+  G++PD  T   +L ACS 
Sbjct: 387 SDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSR 420



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 203/446 (45%), Gaps = 49/446 (10%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT-LMRLYAVCGLIKAVHKLFHFRQHP 181
           +L+AC Q + + VG+++H     +    N +V NT ++ +Y++CG       +F      
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVF----DK 59

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL-RPDGMILVIVLSACSKLGDLSL 240
             +++L  W  ++ AY + +   +A+  F ++      +PD   L  V+ AC+ L DL L
Sbjct: 60  LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGL 119

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G  IH   T    +L  DVF+ NALI MY KCG +  A KVF+ MP +N+VSWNS+I G 
Sbjct: 120 GQIIHGMAT--KMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGF 177

Query: 301 THRGQFKEALDIFRRM--QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           +  G  +E+ + FR M        PD  TLV VL  CA    +E G  VH    K  +N 
Sbjct: 178 SENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNE 237

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM- 417
           +  + N+L+DMY+KC  + +A  +F     +++ S+ +MI G A      +   +  +M 
Sbjct: 238 ELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQ 297

Query: 418 -SQVGIEPDEVTFVGVLSACSHAGLVEE----------------------------GCKH 448
                ++ DE T + VL  C     ++                              C  
Sbjct: 298 TEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGA 357

Query: 449 FLDMSRVYNL--QPQTEHYGCMVDLFGRAGLIREALDLIKSMP---LVPDAFVWGALLGA 503
                RV++L        +  ++  + +    R+ALDL   M    L PD F  G+LL A
Sbjct: 358 LCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLA 417

Query: 504 C----KIHAKVELAEIVMENLVRFEP 525
           C     +H   E+    + N +  +P
Sbjct: 418 CSRMKSLHYGEEIHGFALRNGLAVDP 443



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 128/223 (57%), Gaps = 6/223 (2%)

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
           ++L AC +  D+ +G ++H  ++ +      D  ++  +I MY  CG+   +R VFD++ 
Sbjct: 3   VLLQACGQRKDIEVGRRLHEMVSAST-QFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLR 61

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL-KPDDFTLVCVLNSCANIGWLELGK 345
            KN+  WN++++  T    F++A+ IF  +  +   KPD+FTL CV+ +CA +  L LG+
Sbjct: 62  RKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQ 121

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            +H    K  + +D F+GNAL+ MY KCG +++A  VF  M  R++ S+ ++I G + +G
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENG 181

Query: 406 KAWKALDIFSEMSQVGIE---PDEVTFVGVLSACSHAGLVEEG 445
              ++ + F EM  VG E   PD  T V VL  C+    +E+G
Sbjct: 182 FLQESFNAFREM-LVGEESFVPDVATLVTVLPVCAGEEDIEKG 223


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 172/391 (43%), Positives = 244/391 (62%), Gaps = 5/391 (1%)

Query: 220  PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            PD      ++ AC++L  L  G  +H     N F     VF+ N+L+ +Y  CG   SA 
Sbjct: 802  PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTL--VFVQNSLVHLYGACGLFESAH 859

Query: 280  KVFDEMPVK--NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
            KVFDEMPV+  N+VSWNSM+      G+  E L +F  M G+   PD FT+V VL +CA 
Sbjct: 860  KVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAE 919

Query: 338  IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-RDVYSYTA 396
             G L LG+ VH Y++K  +  +  + NAL+D+YAKCG ++ A  +F  M   R V S+T+
Sbjct: 920  FGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTS 979

Query: 397  MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
            +IVGLA +G   +AL++FS M +  + P E+T VGVL ACSH GLV++G ++F  M   Y
Sbjct: 980  LIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDY 1039

Query: 457  NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
             + P+ EH GCMVDL GRAG + EA D I +MPL P+A VW  LLG+C +H K+EL ++ 
Sbjct: 1040 GISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVA 1099

Query: 517  MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
             E LV  +P   G Y+L++N+Y++   W +   LRK M + +V+K PG SLVE+    YE
Sbjct: 1100 WERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYE 1159

Query: 577  FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            F  GD+SHP++ +IY++L EI  + +  GYI
Sbjct: 1160 FVMGDRSHPESEQIYEMLAEIAERLRREGYI 1190



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 186/331 (56%), Gaps = 26/331 (7%)

Query: 95   NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
            +  P  A+ L+R  L    LP+T+T P +++AC +  +LR G+ +HA + K   ++ V+V
Sbjct: 785  SPRPRVALELHRRRLA---LPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFV 841

Query: 155  FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
             N+L+ LY  CGL ++ HK+F   + P   R+LVSW +++ ++     P E +  F++M 
Sbjct: 842  QNSLVHLYGACGLFESAHKVFD--EMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEML 899

Query: 215  QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              +  PDG  +V VL+AC++ G L+LG ++H Y+      L  +  + NALID+Y KCG+
Sbjct: 900  GVDFAPDGFTIVSVLTACAEFGALALGRRVHVYV--EKVGLVENSHVSNALIDLYAKCGS 957

Query: 275  IPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
            +  AR++F+EM + + VVSW S+I GL   G  KEAL++F  M+   L P + T+V VL 
Sbjct: 958  VNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLY 1017

Query: 334  SCANIGWLELGKWVHTYLDKNHINTDGFIG------NALVDMYAKCGRIDQAFGVFRSMK 387
            +C++ G ++ G     Y D+  +  D  I         +VD+  + GR+++A+    +M 
Sbjct: 1018 ACSHCGLVDDG---FRYFDR--MKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMP 1072

Query: 388  CR-DVYSYTAMIVGLAIHGK------AWKAL 411
               +   +  ++   A+H K      AW+ L
Sbjct: 1073 LEPNAVVWRTLLGSCAMHKKLELGKVAWERL 1103



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 5/206 (2%)

Query: 94   SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
            +N  P E + ++ EML     P+ +T+  VL AC +  +L +G++VH Y  K  L+ N +
Sbjct: 884  ANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSH 943

Query: 154  VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
            V N L+ LYA CG +    ++F   +     R +VSWT+LI       +  EA+  F  M
Sbjct: 944  VSNALIDLYAKCGSVNDARRIF---EEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLM 1000

Query: 214  CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
             +  L P  + +V VL ACS  G +  G +    + ++ + +SP +     ++D+  + G
Sbjct: 1001 EREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKED-YGISPRIEHLGCMVDLLGRAG 1059

Query: 274  NIPSARKVFDEMPVK-NVVSWNSMIA 298
             +  A      MP++ N V W +++ 
Sbjct: 1060 RVEEAYDYIITMPLEPNAVVWRTLLG 1085


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 184/524 (35%), Positives = 293/524 (55%), Gaps = 10/524 (1%)

Query: 78  LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRV 135
           L+ P +  ++ ++     N +P +A+  +R M++   + P+  TL  ++ AC +  + R+
Sbjct: 122 LEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRL 181

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G+ VH + ++    +++ + N+L+  YA     K    LF       A++D++SW+T+I 
Sbjct: 182 GRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKM----IAEKDVISWSTVIA 237

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            YV+     EA+L F DM      P+   ++ VL AC+   DL  G K H         L
Sbjct: 238 CYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRK--GL 295

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             +V +  AL+DMY+KC +   A  VF  +P K+VVSW ++I+G T  G    +++ F  
Sbjct: 296 ETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSI 355

Query: 316 MQ-GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           M      +PD   +V VL SC+ +G+LE  K  H+Y+ K   +++ FIG +LV++Y++CG
Sbjct: 356 MLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCG 415

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVL 433
            +  A  VF  +  +D   +T++I G  IHGK  KAL+ F+ M +   ++P+EVTF+ +L
Sbjct: 416 SLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSIL 475

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SACSHAGL+ EG + F  M   Y L P  EHY  +VDL GR G +  A+++ K MP  P 
Sbjct: 476 SACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPT 535

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
             + G LLGAC+IH   E+AE V + L   E    G Y+LM+N+Y  K  W+   KLR  
Sbjct: 536 PQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNS 595

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           +K+R +KK    SL+E+  + + F   D+ HP+   +Y LL E+
Sbjct: 596 VKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLKEL 639



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/433 (29%), Positives = 225/433 (51%), Gaps = 14/433 (3%)

Query: 82  QVYLYNFIIQCLSNANPLEAIAL-YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            +Y +N +++ LS     E +   +  M      P+ +TLP  LKAC + + +  G+ +H
Sbjct: 24  SLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIH 83

Query: 141 AYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
            +  K   L S++YV ++L+ +Y  CG +    ++F   + P    D+V+W++++  + K
Sbjct: 84  GFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKP----DIVTWSSMVSGFEK 139

Query: 200 MDYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
              P +A+  F  M  A ++ PD + L+ ++SAC+KL +  LG  +H ++    F  S D
Sbjct: 140 NGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGF--SND 197

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           + + N+L++ Y K      A  +F  +  K+V+SW+++IA     G   EAL +F  M  
Sbjct: 198 LSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMD 257

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G +P+  T++CVL +CA    LE G+  H    +  + T+  +  ALVDMY KC   ++
Sbjct: 258 DGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEE 317

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACS 437
           A+ VF  +  +DV S+ A+I G  ++G A ++++ FS M  +    PD +  V VL +CS
Sbjct: 318 AYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCS 377

Query: 438 HAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
             G +E+  C H   +   ++  P       +V+L+ R G +  A  +   + L  D  V
Sbjct: 378 ELGFLEQAKCFHSYVIKYGFDSNPFIG--ASLVELYSRCGSLGNASKVFNGIAL-KDTVV 434

Query: 497 WGALLGACKIHAK 509
           W +L+    IH K
Sbjct: 435 WTSLITGYGIHGK 447



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 191/365 (52%), Gaps = 17/365 (4%)

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            +R L  W TL+++  +     E +  F  M +   +PD   L + L AC +L +++ G 
Sbjct: 21  TKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGE 80

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            IH ++  +   L  D+++ ++LI MY+KCG +  A ++FDE+   ++V+W+SM++G   
Sbjct: 81  MIHGFVKKD-VTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEK 139

Query: 303 RGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
            G   +A++ FRRM     + PD  TL+ ++++C  +    LG+ VH ++ +   + D  
Sbjct: 140 NGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLS 199

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           + N+L++ YAK     +A  +F+ +  +DV S++ +I     +G A +AL +F++M   G
Sbjct: 200 LVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDG 259

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
            EP+  T + VL AC+ A  +E+G K H L + +   L+ + +    +VD++ +     E
Sbjct: 260 TEPNVATVLCVLQACAAAHDLEQGRKTHELAIRK--GLETEVKVSTALVDMYMKCFSPEE 317

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKV-----ELAEIVMENLVRFEPEGDGAYILMT 535
           A  +   +P   D   W AL+    ++        E + +++EN  R  P+     ILM 
Sbjct: 318 AYAVFSRIPR-KDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTR--PDA----ILMV 370

Query: 536 NIYSS 540
            +  S
Sbjct: 371 KVLGS 375



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 125/233 (53%), Gaps = 7/233 (3%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           AR++F EM  +++  WN+++  L+   Q++E L  F  M     KPD+FTL   L +C  
Sbjct: 13  ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGE 72

Query: 338 IGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           +  +  G+ +H ++ K+  + +D ++G++L+ MY KCGR+ +A  +F  ++  D+ ++++
Sbjct: 73  LREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSS 132

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSR 454
           M+ G   +G  ++A++ F  M     + PD VT + ++SAC+       G C H   + R
Sbjct: 133 MVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRR 192

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
            ++          +++ + ++   +EA++L K M    D   W  ++ AC + 
Sbjct: 193 GFS--NDLSLVNSLLNCYAKSRAFKEAVNLFK-MIAEKDVISWSTVI-ACYVQ 241


>gi|356555244|ref|XP_003545944.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 521

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 186/497 (37%), Positives = 289/497 (58%), Gaps = 11/497 (2%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           + NP     N ++  L+N+       LY ++L      N YT  + L+AC+   S     
Sbjct: 18  ITNPNPQFLNPLLSQLTNSQN-AFFDLYNQILSHPFSHNHYTFTHALRACYSHHSRSKAL 76

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           ++HA+ +K+    ++++ N+L+  Y     + +   LF     P    D+VSWT+L+   
Sbjct: 77  EIHAHLVKSGHYLDLFLQNSLLHFYLAHNDVVSASNLFRSIPSP----DVVSWTSLVSGL 132

Query: 198 VKMDYPTEAILSFFDMCQAN--LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            K  +  +A+  F +M      +RP+   LV  L ACS LG L LG   H Y        
Sbjct: 133 AKSGFEAQALHHFTNMNAKPKIVRPNAATLVAALCACSSLGALGLGKSAHAYGL-RMLIF 191

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             +V   NA++++Y KCG + +A+ +FD++  ++VVSW +++ G    G  +EA  +F+R
Sbjct: 192 DGNVIFDNAVLELYAKCGALKNAQNLFDKVFARDVVSWTTLLMGYARGGYCEEAFAVFKR 251

Query: 316 MQ-GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKC 373
           M      +P++ T+V VL++ A+IG L LG+WVH+Y+D  + +  DG I NAL++MY KC
Sbjct: 252 MVLNAEAEPNEATVVTVLSASASIGALSLGQWVHSYIDSRYDLVVDGNIENALLNMYVKC 311

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
           G +     VF  +  +D  S+  +I GLA++G   K L++FS M    +EPD+VTF+GVL
Sbjct: 312 GDMQMGLRVFDMIVHKDAISWGTVICGLAMNGYEKKTLELFSRMLVEVVEPDDVTFIGVL 371

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SACSHAGLV EG   F  M   Y + PQ  HYGCMVD++GRAGL+ EA   ++SMP+  +
Sbjct: 372 SACSHAGLVNEGVMFFKAMRDFYGIVPQMRHYGCMVDMYGRAGLLEEAEAFLRSMPVEAE 431

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
             +WGALL ACKIH   +++E +M +L + +  G G   L++N+Y+S  RW +A K+RK 
Sbjct: 432 GPIWGALLQACKIHGNEKMSEWIMGHL-KGKSVGVGTLALLSNMYASSERWDDANKVRKS 490

Query: 554 MKERKVKKTPGCSLVEV 570
           M+  ++KK  GCS VE+
Sbjct: 491 MRGTRLKKVAGCSWVEL 507


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 170/390 (43%), Positives = 252/390 (64%), Gaps = 5/390 (1%)

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD      VL AC+ L  +  G KIH  +T   F    ++F+ N+LIDMY K G +  AR
Sbjct: 90  PDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGF--ESNLFVRNSLIDMYFKAGYLLLAR 147

Query: 280 KVFDEMPVK--NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCA 336
            +FDEM V+  NVV WN+MIAG     ++ +A+++FR MQ  G + P+D TLV VL +CA
Sbjct: 148 HLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACA 207

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           ++G L+LGKW+  ++ +  +    F+GNAL DMYAKCG I +A  VF  M+ RDV S++ 
Sbjct: 208 HLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSI 267

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I GLA++G A +A   F EM   G +P++V F+G+L+AC+HAGLV++G   F  M + Y
Sbjct: 268 IICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEY 327

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            + P+ EHYGC+VDL  RAG + +A D+I SMP+ P+  +WGALLG C+I+      + V
Sbjct: 328 GVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRV 387

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
           +++++  + +  G+Y+ + N+YSS  R  +A K R +M+E  V KTPGCS +EV    +E
Sbjct: 388 VQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHE 447

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           F  GD SHP++ +IY ++ E+M + K  GY
Sbjct: 448 FFMGDLSHPESNKIYSMIRELMWKMKLAGY 477



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 171/333 (51%), Gaps = 10/333 (3%)

Query: 78  LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPN--TYTLPYVLKACWQSQSLR 134
           L +P ++ +N  ++ L+ N++   AI  +   +     PN   +T   VLKAC     + 
Sbjct: 50  LASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVV 109

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
            GQ++HA   K    SN++V N+L+ +Y   G +     L  F +     R++V W  +I
Sbjct: 110 NGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHL--FDEMFVRDRNVVCWNAMI 167

Query: 195 QAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
             Y + +  ++AI  F  M Q   + P+ + LV VL AC+ LG L LG  I  +I+    
Sbjct: 168 AGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREM 227

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            L   +F+ NAL DMY KCG I  AR+VF++M  ++V+SW+ +I GL   G   EA   F
Sbjct: 228 ALG--LFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCF 285

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAK 372
             M   G KP+D   + +L +C + G ++ G      +DK + ++        +VD+ ++
Sbjct: 286 YEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSR 345

Query: 373 CGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIH 404
            G +D+A  +  SM  + +V  + A++ G  I+
Sbjct: 346 AGELDKAEDMISSMPMKPNVIIWGALLGGCRIY 378


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 193/620 (31%), Positives = 334/620 (53%), Gaps = 36/620 (5%)

Query: 17  NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGS----PQHQTQILYDKIISLSRGNE 72
           ++F  +S+      L     +   KQ H    + G       +    +Y K+  L     
Sbjct: 112 SSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKS 171

Query: 73  IENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
           +  L  ++  +  +N +I   S N   +EA+   R M+++G+ P+  T   VL AC    
Sbjct: 172 LLVL-FEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLD 230

Query: 132 SLRVGQQVHAYSMKTA-LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
            LR G+++HAY+++T  ++ N +V + L+ +Y  CG +++   +F         R +  W
Sbjct: 231 LLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFD----SVLDRKIGLW 286

Query: 191 TTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
             +I  Y + ++  +A++ F +M   A L  +   +  ++ A  +   +S    IH Y+ 
Sbjct: 287 NAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVI 346

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
                L  + ++ NALIDMY + G+I +++++FD M  +++VSWN++I      G+  +A
Sbjct: 347 KR--GLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDA 404

Query: 310 LDIFRRMQGLG----------------LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           L +   MQ +                  KP+  TL+ VL  CA++  L  GK +H Y  +
Sbjct: 405 LLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIR 464

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
           N + +   +G+ALVDMYAKCG ++ A  VF  M  R+V ++  +I+   +HGK  ++L++
Sbjct: 465 NLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLEL 524

Query: 414 FSEMSQVG-----IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCM 468
           F +M   G     ++P EVTF+ + ++CSH+G+V+EG   F  M   + ++P  +HY C+
Sbjct: 525 FEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACI 584

Query: 469 VDLFGRAGLIREALDLIKSMPLVPDAF-VWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           VDL GRAG + EA  L+ +MP   D    W +LLGAC+I+  +E+ EI  ENL++ +P+ 
Sbjct: 585 VDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDV 644

Query: 528 DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
              Y+L++NIYSS   W +A+ LR++MK   VKK PGCS +E   E ++F  GD SHP++
Sbjct: 645 ASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQS 704

Query: 588 LEIYKLLDEIMHQSKNHGYI 607
            +++  L+ +  + K  GY+
Sbjct: 705 EKLHDFLETLSERLKKEGYV 724



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 148/560 (26%), Positives = 255/560 (45%), Gaps = 48/560 (8%)

Query: 41  KQFHAFIIKTGSPQHQTQI-------LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCL 93
           KQ HA + K G     +         +Y K   L    ++ +   +  QV  +N II  L
Sbjct: 30  KQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVS-WNSIISAL 88

Query: 94  SNANPLE-AIALYREMLIKGLLPNTYTLPYVLKAC---WQSQSLRVGQQVHAYSMKTALL 149
                 E AI  +R ML++G  P+++TL  +  AC    +   L +G+Q+H    +    
Sbjct: 89  CRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHW 148

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
              +  N LM +YA  G +     L    +     RDLV+W ++I ++ + +   EA++ 
Sbjct: 149 -RTFSNNALMAMYAKLGRLDDAKSLLVLFE----DRDLVTWNSMISSFSQNERFMEALMF 203

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI--TDNHFNLSPDVFIHNALID 267
              M    ++PDG+    VL ACS L  L  G +IH Y   TD   ++  + F+ +AL+D
Sbjct: 204 LRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTD---DVIENSFVGSALVD 260

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GLGLKPDDF 326
           MY  CG + S R VFD +  + +  WN+MIAG       ++AL +F  M+   GL  +  
Sbjct: 261 MYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNAT 320

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T+  ++ +      +   + +H Y+ K  + T+ ++ NAL+DMY++ G I  +  +F SM
Sbjct: 321 TMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSM 380

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEM----------------SQVGIEPDEVTFV 430
           + RD+ S+  +I    I G++  AL +  EM                 QV  +P+ +T +
Sbjct: 381 EDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLM 440

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
            VL  C+    + +G K     +    L  Q      +VD++ + G +  A  +   MP 
Sbjct: 441 TVLPGCASLSALAKG-KEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMP- 498

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG------DGAYILMTNIYSSKNRW 544
           + +   W  ++ A  +H K + +  + E++V    +G      +  +I +    S     
Sbjct: 499 IRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMV 558

Query: 545 KEALKLRKKMK-ERKVKKTP 563
            E L L  KMK E  ++  P
Sbjct: 559 DEGLSLFHKMKNEHGIEPAP 578



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 209/435 (48%), Gaps = 22/435 (5%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL--LSNVYVFNTLMRLYAVC 165
           M+  G  P+ +  P VLKA    Q L +G+Q+HA+  K      S+V + NTL+ +Y  C
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225
           G +   +K+F        +RD VSW ++I A  + +    AI +F  M      P    L
Sbjct: 61  GGLGDAYKVFD----RITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTL 116

Query: 226 VIVLSACSKL---GDLSLGIKIHR-YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
           V +  ACS L     L LG +IH       H+      F +NAL+ MY K G +  A+ +
Sbjct: 117 VSMALACSNLRKRDGLWLGKQIHGCCFRKGHWR----TFSNNALMAMYAKLGRLDDAKSL 172

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
                 +++V+WNSMI+  +   +F EAL   R M   G+KPD  T   VL +C+++  L
Sbjct: 173 LVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLL 232

Query: 342 ELGKWVHTY-LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
             GK +H Y L  + +  + F+G+ALVDMY  CG+++    VF S+  R +  + AMI G
Sbjct: 233 RTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAG 292

Query: 401 LAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSHA-GLVEEGCKHFLDMSRVYNL 458
            A      KAL +F EM +  G+  +  T   ++ A     G+  +   H   + R   L
Sbjct: 293 YAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKR--GL 350

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +        ++D++ R G I+ +  +  SM    D   W  ++ +  I  +   A +++ 
Sbjct: 351 ETNRYLQNALIDMYSRMGDIKTSKRIFDSME-DRDIVSWNTIITSYVICGRSSDALLLLH 409

Query: 519 NLVRFEPEG--DGAY 531
            + R E +   DG Y
Sbjct: 410 EMQRIEEKSTYDGDY 424


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 207/596 (34%), Positives = 318/596 (53%), Gaps = 43/596 (7%)

Query: 22  LSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQI------------LYDKIIS 66
           LSLL QS      K+   L Q HAF+++     +P   T+             LYD +  
Sbjct: 156 LSLLQQS------KTRANLLQIHAFMLRNALETNPNLFTKFIATCSSIALLAPLYDPLAG 209

Query: 67  LSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIK-GLLPNTYTLPYVL 124
           +     + +        +L N +I+         E+ ALYR++       P+++T   + 
Sbjct: 210 IVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLA 269

Query: 125 KACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ 184
           K+C  + ++  GQ++H++ +      ++Y    L+ +YA  G +    KLF         
Sbjct: 270 KSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFD----EMID 325

Query: 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI 244
           R  VSWT LI  YV+      A   F  M    +  D      ++ A  KLGD+    K+
Sbjct: 326 RSQVSWTALIGGYVRSGDMDNAGKLFDQM----IEKDSAAFNTMIDAYVKLGDMCSARKL 381

Query: 245 HRYITDNHFNLSPD--VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
                   F+  P+  V     +I  Y   GN+ SAR +FD MP KN+ SWN+MI+G   
Sbjct: 382 --------FDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQ 433

Query: 303 RGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
             Q  EAL +F  MQ    L+PD+ T+V VL + A++G L+LG WVH ++ +  ++    
Sbjct: 434 NKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATN 493

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           +G AL+DMYAKCG I ++ GVF +M  ++  S+ A+I   AI+G+A +AL +F EM+  G
Sbjct: 494 VGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKG 553

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
             P+E+T +GVLSAC+H+GLVEEG + F  M   + L P+ EHYGCMVDL GRAG ++EA
Sbjct: 554 FMPNEITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCMVDLLGRAGCLQEA 612

Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
             L++SMP   +  +  + L AC     V  AE V++  ++ E   DG YI++ N+Y+++
Sbjct: 613 EKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANE 672

Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
            RWKEA +++  M+   VKK  GCS +EV    +EF  GD+ HPK   I+ +L ++
Sbjct: 673 KRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVHPKWEAIHSVLGQL 728


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 183/566 (32%), Positives = 307/566 (54%), Gaps = 51/566 (9%)

Query: 86  YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I  LS      E +  + EM  +G  PN+ T   VL AC     L  G  +HA  +
Sbjct: 214 WNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIV 273

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           +     +VY    L+ +YA CG +++  ++F        + + VSWT+LI    +  +  
Sbjct: 274 RMEPCLDVYAGCGLIDMYAKCGRLESARQVFD----GLTEHNAVSWTSLIGGVAQAGFQE 329

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EA++ F  M +  +  D   L  VL  C    D+S+G ++H +       L   V + NA
Sbjct: 330 EALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITR--GLDSSVPVANA 387

Query: 265 LIDMYLKCGNI-------------------------------PSARKVFDEMPVKNVVSW 293
           L+ MY KCG++                                 AR+ FD+MP +NV+SW
Sbjct: 388 LVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISW 447

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           NSM+A    RG ++E L ++ +M   G+K D  T    +++CA++  L LG  +    +K
Sbjct: 448 NSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEK 507

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
              +++  + N++V MY++CG+I++A  +F S+  +++ S+ AM+ G A +G+  K ++I
Sbjct: 508 LGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEI 567

Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473
           F +M  +G  PD++++V VLS CSH+G V EG  +FL M++ + + P +EH+ CMVDL G
Sbjct: 568 FEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLG 627

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
           RAG + +A +LI  MP  P+A +WGALL AC+IH   +LAE+ ++NL+  + EG G+Y L
Sbjct: 628 RAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCL 687

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
           + NIYS   + +    +RK M+++ V+K PGCS +EV    + F   D +HP+  +++++
Sbjct: 688 LANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVDNRVHVFTVDDTNHPQIKDVHRM 747

Query: 594 LD-------------EIMHQSKNHGY 606
           L+              +M+  ++H Y
Sbjct: 748 LEEIIKKIEEIKNYANVMNSGRSHNY 773



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 221/479 (46%), Gaps = 55/479 (11%)

Query: 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA 183
           +K C   +S+ + +++HA  +   L S++++ N L+ +Y+ CGLI   +++F     P  
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFP-- 68

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMI--------LVIVLSACSK 234
             ++ SW T+I  +       EA   F  M + + +  + M+        L   + A   
Sbjct: 69  --NVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGS 126

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF------------ 282
           LG L L +++H +     F+   D  +  +++DMY+KCG +  A+KVF            
Sbjct: 127 LGYLKLALQLHGFA--EKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWN 184

Query: 283 -------------------DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
                               +MP ++ VSWN+MI+ L+  G   E L+ F  M   G +P
Sbjct: 185 SMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRP 244

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           +  T   VL++C +I  LE G  +H  + +     D + G  L+DMYAKCGR++ A  VF
Sbjct: 245 NSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVF 304

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             +   +  S+T++I G+A  G   +AL +F++M +V +  D+ T   VL  C     + 
Sbjct: 305 DGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDIS 364

Query: 444 EGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
            G + H   ++R   L         +V ++ + G + +A    + MP + D   W A++ 
Sbjct: 365 IGEQLHAHTITR--GLDSSVPVANALVTMYAKCGDVWKANHAFELMP-IRDIISWTAMIT 421

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDG-AYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           A      VE A    + +    PE +  ++  M   Y  +  W+E LK+  +M    VK
Sbjct: 422 AFSQAGDVEKAREYFDKM----PERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 476


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 187/480 (38%), Positives = 289/480 (60%), Gaps = 16/480 (3%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH---KLFHFRQHPQAQRDLVSWTTL 193
           +Q+HA  ++T+L+ N  VF+      A+  + + ++   ++F  R +P     L    T+
Sbjct: 28  RQIHAVLLRTSLIRNSDVFHHFFSRLALSLIPRDINYSCRVFSQRLNPT----LSHCNTM 83

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLR--PDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
           I+A+     P E     F   + N+    + +     L  C K GDL  G++IH  I  +
Sbjct: 84  IRAFSLSQTPCEG-FRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSD 142

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
            F LS D  +   L+D+Y  C N   A KVFDE+P ++ VSWN +I+      + ++ L 
Sbjct: 143 GF-LS-DSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLV 200

Query: 312 IFRRMQG---LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368
           +F +M+      +KPD+ T +  L +CAN+G L+ GK VH ++D+N ++    + N LV 
Sbjct: 201 LFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVS 260

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           MY++CG +D+A+ VF  M+ R+V S+TAMI GLA++G   +A++ F+EM + GI P+E T
Sbjct: 261 MYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISPEEQT 320

Query: 429 FVGVLSACSHAGLVEEGCKHFLDM-SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487
             G+LSACSH+GLV+EG   F  M S  + ++P   HYGC+VDL GRA L+ +A  LIKS
Sbjct: 321 LTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKS 380

Query: 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547
           M + PD+ +W  LLGAC++H  VEL E V+ +L+ F+ E  G Y+L+ N YSS  +W++ 
Sbjct: 381 MEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYVLLLNTYSSVGKWEKV 440

Query: 548 LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +LR  MK+++++  PGCS +E+ G  +EF   D SHP+  EIYK+L EI  Q K  GY+
Sbjct: 441 TELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYV 500



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 170/335 (50%), Gaps = 16/335 (4%)

Query: 80  NPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQ 137
           NP +   N +I+  S +  P E   L+R +      P N  +  + LK C +S  L  G 
Sbjct: 74  NPTLSHCNTMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGL 133

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           Q+H        LS+  +  TLM LY+ C       K+F   + P  QRD VSW  LI  Y
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFD--EIP--QRDTVSWNVLISCY 189

Query: 198 VKMDYPTEAILSFFDMCQAN----LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           ++ +  T  +L  FD  + +    ++PD +  ++ L AC+ LG L  G ++H +I +N  
Sbjct: 190 LR-NKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDEN-- 246

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            LS  + + N L+ MY +CG++  A +VF+ M  +NVVSW +MI+GL   G  KEA++ F
Sbjct: 247 GLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAF 306

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYA 371
             M   G+ P++ TL  +L++C++ G ++ G      +          + +   +VD+  
Sbjct: 307 NEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLG 366

Query: 372 KCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
           +   +D+A+ + +SM+ + D   +  ++    +HG
Sbjct: 367 RARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHG 401



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 131/280 (46%), Gaps = 12/280 (4%)

Query: 86  YNFIIQC-LSNANPLEAIALYREM---LIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           +N +I C L N    + + L+ +M   + + + P+  T    L+AC    +L  G+QVH 
Sbjct: 182 WNVLISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHD 241

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           +  +  L   + + NTL+ +Y+ CG +   +++F    +   +R++VSWT +I       
Sbjct: 242 FIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVF----NRMRERNVVSWTAMISGLAMNG 297

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           +  EAI +F +M +  + P+   L  +LSACS  G +  G+     +    F + P++  
Sbjct: 298 FGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHH 357

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRM-QGL 319
           +  ++D+  +   +  A  +   M +K +   W +++      G  +    +   + +  
Sbjct: 358 YGCIVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFK 417

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
             +  D+ L  +LN+ +++G  E    + + + K  I T+
Sbjct: 418 AEEAGDYVL--LLNTYSSVGKWEKVTELRSLMKKKRIQTN 455


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 306/569 (53%), Gaps = 14/569 (2%)

Query: 44  HAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL------QNPQVYLYNFIIQCLSNAN 97
           H +++K G    Q  +    I   ++ N I+N  L          +   + I  C SN  
Sbjct: 433 HGYLVKLGFGT-QCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGL 491

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
             EAI L+  M ++G   ++ TL  VL AC +S    VG+ VH YS+KT L+    + N 
Sbjct: 492 NSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANA 551

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +Y+ C    + +++F       AQ+++VSWT +I +Y +     +      +M    
Sbjct: 552 LLDMYSNCSDWHSTNQIFR----NMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDG 607

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++PD   +  VL   +    L  G  +H Y   N   +   + + NAL++MY+ C N+  
Sbjct: 608 IKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRN--GMEKLLPVANALMEMYVNCRNMEE 665

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           AR VFD +  K+++SWN++I G +      E+  +F  M  L  KP+  T+ C+L + A+
Sbjct: 666 ARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDML-LQFKPNTVTMTCILPAVAS 724

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           I  LE G+ +H Y  +     D +  NALVDMY KCG +  A  +F  +  +++ S+T M
Sbjct: 725 ISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIM 784

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I G  +HG    A+ +F +M   G+EPD  +F  +L AC H+GL  EG K F  M + Y 
Sbjct: 785 IAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYK 844

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           ++P+ +HY C+VDL    G ++EA + I+SMP+ PD+ +W +LL  C+IH  V+LAE V 
Sbjct: 845 IEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVA 904

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           + + + EPE  G Y+L+ NIY+   RW+   KL+ K+  R +++  GCS +EV G+ + F
Sbjct: 905 DRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVF 964

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
              +++HP+   I + LD +  + +  G+
Sbjct: 965 IADNRNHPEWNRIAEFLDHVARRMREEGH 993



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 199/443 (44%), Gaps = 45/443 (10%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E ++L+R+M   G+ P+ + +  VLK      S+  G+ +H    K  L     V N L+
Sbjct: 181 EGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALI 240

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            LY+ CG ++   ++F         RD +SW + I  Y    +   A+  F  M      
Sbjct: 241 ALYSRCGCMEDAMQVFD----SMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTE 296

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF-------NLSPDVFIHNALIDMYLKC 272
              + ++ VL AC++LG   +G  +H Y   +             D  + + L+ MY+KC
Sbjct: 297 ISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKC 356

Query: 273 GNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           G++ SAR+VFD MP K NV  WN ++ G     +F+E+L +F +M  LG+ PD+  L C+
Sbjct: 357 GDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCL 416

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L     +     G   H YL K    T   + NAL+  YAK   ID A  VF  M  +D 
Sbjct: 417 LKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDT 476

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA------------ 439
            S+ ++I G   +G   +A+++F  M   G E D  T + VL AC+ +            
Sbjct: 477 ISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGY 536

Query: 440 ----GLVEE------------GCKHFLDMSRVYN--LQPQTEHYGCMVDLFGRAGLIREA 481
               GL+ E             C  +   ++++    Q     +  M+  + RAGL  + 
Sbjct: 537 SVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKV 596

Query: 482 LDLIKSMPL---VPDAFVWGALL 501
             L++ M L    PD F   ++L
Sbjct: 597 AGLLQEMVLDGIKPDVFAVTSVL 619



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 183/398 (45%), Gaps = 27/398 (6%)

Query: 123 VLKACWQSQSLRVGQQVHA-YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           V++ C + +SL   ++ HA     T  +    +   L+  Y  CG +     +F   + P
Sbjct: 100 VVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFD--EMP 157

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
               D+  WT+L+ AY K     E +  F  M    + PD   +  VL   + LG ++ G
Sbjct: 158 PRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEG 217

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
             IH  +      L     + NALI +Y +CG +  A +VFD M  ++ +SWNS I+G  
Sbjct: 218 EVIHGLL--EKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYF 275

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY---------LD 352
             G    A+D+F +M   G +    T++ VL +CA +G+  +GK VH Y         L+
Sbjct: 276 SNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLE 335

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKAL 411
                 D  +G+ LV MY KCG +  A  VF +M  + +V+ +  ++ G A   +  ++L
Sbjct: 336 SVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESL 395

Query: 412 DIFSEMSQVGIEPDEVTFVGVLS-----ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
            +F +M ++GI PDE     +L      +C+  GLV  G  + + +        Q     
Sbjct: 396 LLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHG--YLVKL----GFGTQCAVCN 449

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
            ++  + ++ +I  A+ +   MP   D   W +++  C
Sbjct: 450 ALISFYAKSNMIDNAVLVFDRMPH-QDTISWNSVISGC 486



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 140/266 (52%), Gaps = 10/266 (3%)

Query: 265 LIDMYLKCGNIPSARKVFDEMP--VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           L+  YLKCG++  AR VFDEMP  V +V  W S+++     G F+E + +FR+MQ  G+ 
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           PD   + CVL   A++G +  G+ +H  L+K  +     + NAL+ +Y++CG ++ A  V
Sbjct: 196 PDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQV 255

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F SM  RD  S+ + I G   +G   +A+D+FS+M   G E   VT + VL AC+  G  
Sbjct: 256 FDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFE 315

Query: 443 EEG-CKHFLDMSR--VYNLQPQT----EHYGC-MVDLFGRAGLIREALDLIKSMPLVPDA 494
             G   H   M    +++L+       E  G  +V ++ + G +  A  +  +MP   + 
Sbjct: 316 LVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNV 375

Query: 495 FVWGALLGACKIHAKVELAEIVMENL 520
            VW  ++G     A+ E + ++ E +
Sbjct: 376 HVWNLIMGGYAKAAEFEESLLLFEQM 401


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 182/550 (33%), Positives = 310/550 (56%), Gaps = 24/550 (4%)

Query: 75  NLSLQNPQV--YLYNFIIQC-----LSNANPLEA-IALYREMLIKGLLPNTYTLPY---- 122
           +LSL +  +  +  NF+I+C      SN + L   I+++     + L P  Y+  +    
Sbjct: 3   SLSLPSKNILGFTANFLIRCKILPRRSNTSSLSRNISVFASYEQEELSPGRYSDEFNVVQ 62

Query: 123 ------VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
                 +L+ C ++ ++   +  H  +M+  L  +V + N L+  Y+ CG ++   ++F 
Sbjct: 63  ASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFD 122

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
                  +R LVSW T+I  Y +    +EA+  F++M     +     +  VLSAC    
Sbjct: 123 ----GMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANC 178

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           D     K+H        +L  ++++  AL+D+Y KCG I  A +VF+ M  K+ V+W+SM
Sbjct: 179 DALECKKLHCLSMKTSLDL--NLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSM 236

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           +AG      ++EAL ++RR Q + L+ + FTL  V+ +C+N+  L  GK +H  + K+  
Sbjct: 237 VAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGF 296

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
            ++ F+ ++ VDMYAKCG + +++ +F  ++ +++  +  +I G A H +  + + +F +
Sbjct: 297 GSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEK 356

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M Q G+ P+EVTF  +LS C H GLVEEG + F  M   Y L P   HY CMVD+ GRAG
Sbjct: 357 MQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAG 416

Query: 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536
           L+ EA +LIKS+P  P A +WG+LL +C++   +ELAE+  + L   EPE  G ++L++N
Sbjct: 417 LLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSN 476

Query: 537 IYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDE 596
           IY++  +W+E  K RK +++  VKK  G S +++  + + FR G+ SHP+  EI  +LD 
Sbjct: 477 IYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDN 536

Query: 597 IMHQSKNHGY 606
           ++ + +  GY
Sbjct: 537 LVIELRKFGY 546


>gi|242067895|ref|XP_002449224.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
 gi|241935067|gb|EES08212.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
          Length = 570

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 183/470 (38%), Positives = 271/470 (57%), Gaps = 4/470 (0%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           ++A+ALY+ M   G+ P+ YT P VL AC  ++  R+G+ VH  +++ AL  + +V  TL
Sbjct: 103 VDALALYKRMRAAGVAPDHYTYPIVLPACAAARQPRLGRAVHGDAVRFALDGDGFVRCTL 162

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y   G +     +F   +   + R +VSWT ++  YV+  +  EA+  F  M    +
Sbjct: 163 IAMYFQEGEVADAELVF--AESHGSSRTVVSWTAMVAGYVQNYFFGEALALFSTMVAEGV 220

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            P+ + L+  L        L  G  +H ++  + F+   ++ + NALI MY KCG+IP A
Sbjct: 221 LPNEITLISFLPCLQGQEWLDAGEMVHGFVIRSGFD--ANIPLANALIAMYGKCGSIPMA 278

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
             +F+ M V+++VSWN+M+A     G   EA+  F RM    +  D  TLV VL++C   
Sbjct: 279 EALFEGMAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRMLTEKVGFDCVTLVSVLSACGRS 338

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G LE GKWVH +   + ++ D  IGN LVDMYAKCG I  A  VF  +  R V S++AMI
Sbjct: 339 GALETGKWVHEFARSHGLDADARIGNVLVDMYAKCGEIADARKVFDCLHVRGVVSWSAMI 398

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
              A HG + +AL +F  M   G+ P+  TF  VL AC H+GLV EG KHF  +   Y +
Sbjct: 399 SAYANHGDSEEALKLFCLMKSEGVRPNSFTFTAVLVACGHSGLVNEGLKHFNSILSDYQM 458

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P  EHY C+VD+ GRAG + EA ++I+ M L PD  VWGA LG CK+H+ +ELAE V +
Sbjct: 459 SPTLEHYACIVDMLGRAGRLVEAYEIIRGMSLCPDKCVWGAFLGGCKLHSNLELAEFVAK 518

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
           +L +        Y+LM+N+Y      ++A ++R+ MKE ++KKT G S V
Sbjct: 519 DLFQSGSNDVTFYVLMSNMYFEAGMLEDAERIRRAMKEMELKKTAGHSAV 568



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFK--------EALDIFRRMQGLGLKPDDFTLV 329
           AR+VFD  PV++   WN+++    H             +AL +++RM+  G+ PD +T  
Sbjct: 66  ARRVFDAAPVRDAYMWNTLLRAHAHSHSHSQSSHSHAVDALALYKRMRAAGVAPDHYTYP 125

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--K 387
            VL +CA      LG+ VH    +  ++ DGF+   L+ MY + G +  A  VF      
Sbjct: 126 IVLPACAAARQPRLGRAVHGDAVRFALDGDGFVRCTLIAMYFQEGEVADAELVFAESHGS 185

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
            R V S+TAM+ G   +    +AL +FS M   G+ P+E+T +  L
Sbjct: 186 SRTVVSWTAMVAGYVQNYFFGEALALFSTMVAEGVLPNEITLISFL 231


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 177/520 (34%), Positives = 293/520 (56%), Gaps = 7/520 (1%)

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           + I  C SN    +AI L+  M ++G   ++ TL  VL AC +   L +G+ VH YS+KT
Sbjct: 267 SMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKT 326

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
             +S   + N L+ +Y+ C   ++ +K+F        Q+++VSWT +I +Y +     + 
Sbjct: 327 GFISQTSLANVLLDMYSNCSDWRSTNKIFR----NMVQKNVVSWTAMITSYTRAGLYDKV 382

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
              F +M     RPD   +   L A +    L  G  +H Y   N   +   + + NAL+
Sbjct: 383 AGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRN--GMEKVLAVTNALM 440

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           +MY+KCGN+  A+ +FD +  K+++SWN++I G +      EA  +F  M  L L+P+  
Sbjct: 441 EMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEML-LQLRPNAV 499

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T+ C+L + A++  LE G+ +H Y  +     D F+ NAL+DMY KCG +  A  +F  +
Sbjct: 500 TMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRL 559

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             +++ S+T M+ G  +HG+   A+ +F +M   GI PD  +F  +L ACSH+GL +EG 
Sbjct: 560 SNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGW 619

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           + F  M + + ++P+ +HY CMVDL    G ++EA + I SMP+ PD+ +W +LL  C+I
Sbjct: 620 RFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRI 679

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H  V+LAE V E +   EPE  G Y+L+ NIY+   RW+   KL+ K+  R +++  GCS
Sbjct: 680 HRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCS 739

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            +E  G+ + F   +++HP+   I + L+E+  + +  G+
Sbjct: 740 WIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGH 779



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 211/480 (43%), Gaps = 41/480 (8%)

Query: 59  ILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNT 117
           ++Y K   L     + +   Q   V ++  ++   + A  L E + L+R+M   G+ P+ 
Sbjct: 137 LMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDA 196

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
           YT+  VLK      S+  G+ VH    K    S   V N LM  YA     K    +F  
Sbjct: 197 YTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDG 256

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
             H    RD++SW ++I          +AI  F  M       D   L+ VL AC++L  
Sbjct: 257 MPH----RDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHL 312

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
           L LG  +H Y     F       + N L+DMY  C +  S  K+F  M  KNVVSW +MI
Sbjct: 313 LFLGRVVHGYSVKTGF--ISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMI 370

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
              T  G + +   +F+ M   G +PD F +   L++ A    L+ GK VH Y  +N + 
Sbjct: 371 TSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGME 430

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
               + NAL++MY KCG +++A  +F  +  +D+ S+  +I G + +  A +A  +F+EM
Sbjct: 431 KVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEM 490

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEG----------------------------CKHF 449
             + + P+ VT   +L A +    +E G                            C   
Sbjct: 491 -LLQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGAL 549

Query: 450 LDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGAC 504
           L   R+++         +  MV  +G  G  R+A+ L + M    + PDA  + A+L AC
Sbjct: 550 LLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYAC 609



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 179/385 (46%), Gaps = 12/385 (3%)

Query: 123 VLKACWQSQSLRVGQQVH----AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           VL+ C + +SL  G++ H    A S+    + NV +   L+ +Y  CG ++   ++F   
Sbjct: 97  VLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNV-LGQKLVLMYLKCGDLENARRVFD-- 153

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
           + PQ   D+  WT L+  Y K     E +L F  M    +RPD   +  VL   + LG +
Sbjct: 154 EMPQVS-DVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSI 212

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G  +H  +            + NAL+  Y K      A  VFD MP ++V+SWNSMI+
Sbjct: 213 EDGEVVHGLL--EKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMIS 270

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G T  G + +A+++F RM   G + D  TL+ VL +CA +  L LG+ VH Y  K    +
Sbjct: 271 GCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFIS 330

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
              + N L+DMY+ C        +FR+M  ++V S+TAMI      G   K   +F EM 
Sbjct: 331 QTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMG 390

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             G  PD       L A +   L++ G K     +    ++        +++++ + G +
Sbjct: 391 LEGTRPDIFAITSALHAFAGNELLKHG-KSVHGYAIRNGMEKVLAVTNALMEMYVKCGNM 449

Query: 479 REALDLIKSMPLVPDAFVWGALLGA 503
            EA  LI    +  D   W  L+G 
Sbjct: 450 EEA-KLIFDGVVSKDMISWNTLIGG 473


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 192/576 (33%), Positives = 316/576 (54%), Gaps = 15/576 (2%)

Query: 37  VGQLKQFHAFIIKTGS----PQHQTQI-LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQ 91
           VG   Q HA ++K G     P   + I LY ++  L    ++ +       V   + I  
Sbjct: 210 VGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAG 269

Query: 92  CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
            + N   LE   ++ +M + G+ P   T   V+K+C   + L + + +   ++K+   ++
Sbjct: 270 YVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTD 329

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
             V   LM   + C  +     LF   +     +++VSWT +I   ++     +A+  F 
Sbjct: 330 QIVITALMVALSKCKEMDDALSLFSLMEEG---KNVVSWTAMISGCLQNGGNDQAVNLFS 386

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            M +  ++P+      +L+    +       ++H  +   ++  S  V    AL+D Y+K
Sbjct: 387 QMRREGVKPNHFTYSAILTVHYPV----FVSEMHAEVIKTNYERSSSV--GTALLDAYVK 440

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
            GN   A KVF+ +  K++++W++M+AG    G+ +EA  +F ++   G+KP++FT   V
Sbjct: 441 LGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSV 500

Query: 332 LNSCAN-IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           +N+CA+     E GK  H Y  K  +N    + +ALV MYAK G ID A  VF+  K RD
Sbjct: 501 INACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERD 560

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
           + S+ +MI G + HG+A KAL++F EM +  ++ D VTF+GV++AC+HAGLVE+G K+F 
Sbjct: 561 LVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFN 620

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M   +++ P  +HY CM+DL+ RAG++ +A+ +I  MP  P A VW  LLGA ++H  V
Sbjct: 621 SMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNV 680

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           EL E+  E L+  +PE   AY+L++N+Y++   W+E   +RK M +RKVKK PG S +EV
Sbjct: 681 ELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEV 740

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             + Y F  GD +HP + +IY  L E+  + K+ GY
Sbjct: 741 KNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGY 776



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 208/426 (48%), Gaps = 17/426 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+  +L   L P+  TL  V   C  S   ++G+QVH   +K  L+ +V V  +L+
Sbjct: 76  EALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLV 135

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y     +    ++F        +R++VSWT+L+  Y            F  M    + 
Sbjct: 136 DMYMKTENVNDGRRVF----DEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVL 191

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+   +  V++A    G + +G+++H  +  + F  +  VF  N+LI +Y + G +  AR
Sbjct: 192 PNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVF--NSLISLYSRLGMLRDAR 249

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            VFD+M +++ V+WNSMIAG    GQ  E  +IF +MQ  G+KP   T   V+ SCA++ 
Sbjct: 250 DVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLR 309

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM-KCRDVYSYTAMI 398
            L L K +     K+   TD  +  AL+   +KC  +D A  +F  M + ++V S+TAMI
Sbjct: 310 ELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMI 369

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            G   +G   +A+++FS+M + G++P+  T+  +L+   +   V E     +      N 
Sbjct: 370 SGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTV-HYPVFVSEMHAEVIKT----NY 424

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP--DAFVWGALLGACKIHAKVELAEIV 516
           +  +     ++D + + G     +D +K   ++   D   W A+L       + E A  +
Sbjct: 425 ERSSSVGTALLDAYVKLG---NTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKL 481

Query: 517 MENLVR 522
              L++
Sbjct: 482 FHQLIK 487



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 206/431 (47%), Gaps = 20/431 (4%)

Query: 104 LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYA 163
           L+ +M  +G+LPN YT+  V+ A      + +G QVHA  +K      + VFN+L+ LY+
Sbjct: 181 LFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYS 240

Query: 164 VCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM 223
             G+++    +F         RD V+W ++I  YV+     E    F  M  A ++P  M
Sbjct: 241 RLGMLRDARDVF----DKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHM 296

Query: 224 ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
               V+ +C+ L +L+L   +      + F  + D  +  AL+    KC  +  A  +F 
Sbjct: 297 TFASVIKSCASLRELALVKLMQCKALKSGF--TTDQIVITALMVALSKCKEMDDALSLFS 354

Query: 284 EMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
            M   KNVVSW +MI+G    G   +A+++F +M+  G+KP+ FT   +L     + +  
Sbjct: 355 LMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAIL----TVHYPV 410

Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
               +H  + K +      +G AL+D Y K G    A  VF  ++ +D+ +++AM+ G A
Sbjct: 411 FVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYA 470

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
             G+  +A  +F ++ + GI+P+E TF  V++AC+      E  K F      Y ++ + 
Sbjct: 471 QTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQF----HAYAIKMRL 526

Query: 463 EHYGC----MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            +  C    +V ++ + G I  A ++ K      D   W +++     H + + A  V +
Sbjct: 527 NNALCVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYSQHGQAKKALEVFD 585

Query: 519 NLVRFEPEGDG 529
            + +   + D 
Sbjct: 586 EMQKRNMDVDA 596



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 138/261 (52%), Gaps = 2/261 (0%)

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
           F + P     L     L+ +Y +     EA+  F  +  ++L+PD   L  V + C+   
Sbjct: 48  FDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSL 107

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           D  LG ++H       F L   V +  +L+DMY+K  N+   R+VFDEM  +NVVSW S+
Sbjct: 108 DGKLGRQVHCQCVK--FGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSL 165

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           +AG +  G +    ++F +MQ  G+ P+ +T+  V+ +  N G + +G  VH  + K+  
Sbjct: 166 LAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGF 225

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
                + N+L+ +Y++ G +  A  VF  M+ RD  ++ +MI G   +G+  +  +IF++
Sbjct: 226 EEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNK 285

Query: 417 MSQVGIEPDEVTFVGVLSACS 437
           M   G++P  +TF  V+ +C+
Sbjct: 286 MQLAGVKPTHMTFASVIKSCA 306



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 4/228 (1%)

Query: 278 ARKVFDEMPVK--NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
           A  +FD++P +   +   N ++   +   Q KEAL++F  +    L+PD+ TL CV N C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A     +LG+ VH    K  +     +G +LVDMY K   ++    VF  M  R+V S+T
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455
           +++ G + +G      ++F +M   G+ P+  T   V++A  + G+V  G +    M   
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAMVVK 222

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           +  +     +  ++ L+ R G++R+A D+   M  + D   W +++  
Sbjct: 223 HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKME-IRDWVTWNSMIAG 269


>gi|296083914|emb|CBI24302.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 195/566 (34%), Positives = 312/566 (55%), Gaps = 47/566 (8%)

Query: 20  QQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQ 79
           Q + L H  P    + ++ QL Q HA ++KT  P                          
Sbjct: 15  QAIKLKHPIP----TCTLNQLNQIHAHLLKTHKPP------------------------- 45

Query: 80  NPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
                ++N ++  LS   P +A+ LY +M++     N +T  + L A     +L    ++
Sbjct: 46  ----LIFNTLLPSLS---PQDALLLYNQMVLHRTSHNHFTFTHALIASSSLHALHKTLEI 98

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           HA ++K+   S++++ NTL+  Y V         +F     P    D+VSWT++I    K
Sbjct: 99  HARAIKSGHYSDIFIQNTLLHSYVVENNFVFAKSVFKSISSP----DVVSWTSIISGLSK 154

Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
             +  EAI  F  M   +++P+   LV V+SAC  L  +  G  IH Y   +      ++
Sbjct: 155 CGFDEEAIGEFLSM---DVKPNTSTLVSVVSACCGLRAVRFGKAIHGYSLRSMD--GDNI 209

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QG 318
            + NAL+D Y+KCG + SA+ +F +M  ++V+SW +M+ GL   G  +EA+++F+ M +G
Sbjct: 210 ILDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKG 269

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRID 377
               P++ TLV VL +C+++  L LG+WVH+Y+   + +  DG +GNAL++MYAKC  + 
Sbjct: 270 GEAVPNEVTLVNVLTACSSLSALNLGRWVHSYISTRYDLVVDGNVGNALINMYAKCSDMY 329

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A  VF  +  +D+ S++ +I G+A++G    AL  FS M   G+ PD+VTF+G+LSACS
Sbjct: 330 MAVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSACS 389

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAGLVE+G   F  M+ VY + PQ +HY CMVD++GRAGL+ EA   I+ MP+  +  +W
Sbjct: 390 HAGLVEQGLIFFKAMNNVYGIAPQMQHYACMVDMYGRAGLLEEAEAFIRGMPMEAEGPIW 449

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GALL ACKIH   ++   + ++L   +    G   L++N Y+S NRW +A K+R  M++ 
Sbjct: 450 GALLNACKIHGNEKMFGRIDQSLRNAKGVSIGTLALLSNTYASSNRWDDANKVRDMMRDM 509

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKS 583
            +KK  GCS +EV      +   ++S
Sbjct: 510 GLKKMSGCSWIEVDAMINRYDGANRS 535


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 198/567 (34%), Positives = 302/567 (53%), Gaps = 21/567 (3%)

Query: 41  KQFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEIENLSLQNP--QVYLYNFIIQCL 93
           KQ HA +IK G     S Q+Q   +Y K       N++  +  + P   V  +N +I  +
Sbjct: 93  KQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEF---NDVCKMFDEMPLKNVVSWNTLICGV 149

Query: 94  SNANPLEAIA-----LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
              N   A+       +R+M+++ + PN  TL  +L+A  +   + + +Q+H + +K+  
Sbjct: 150 VEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGF 209

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
            SN +V + L+  YA  GL+      F       + RDLV W  ++  Y       +A  
Sbjct: 210 DSNCFVGSALVDSYAKFGLVDEAQSAFD----EVSSRDLVLWNVMVSCYALNGVQGKAFG 265

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F  M    ++ D      ++++C  LG   LG ++H  I    F+L  DV + +AL+DM
Sbjct: 266 VFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDL--DVLVASALVDM 323

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y K  NI  ARK FD M VKN+VSW +M  G    G  KE + + + M  +   PD+  L
Sbjct: 324 YSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELAL 383

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             +L+SC N+        VH Y+ +N       I NALV  Y+KCG I  AF  F S+  
Sbjct: 384 ASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAE 443

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
            D+ S+T+++   A HG + + +D+F ++    + PD+V F+GVLSAC+H G V EG  +
Sbjct: 444 PDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFVLEGLHY 503

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M  VY + P +EHY  ++DL GRAG + EA++L+ SMP+ P +   GA LGACK++ 
Sbjct: 504 FNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPRSDTLGAFLGACKVYR 563

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
            V LA    E L   EP   G Y LM+N+Y+S   W +  ++RK M+ER   K PGCS +
Sbjct: 564 NVGLARWASEKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWM 623

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           E  GE + F   DK+HP+ +++Y +LD
Sbjct: 624 ETAGEVHTFVSRDKTHPRAVQVYGMLD 650


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 177/521 (33%), Positives = 291/521 (55%), Gaps = 33/521 (6%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           N  T   +L    +   +++G+Q+H + +K   +S V+V + L+ +Y+  G+I    K+F
Sbjct: 142 NRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVF 201

Query: 176 HFRQHPQA-----------------------------QRDLVSWTTLIQAYVKMDYPTEA 206
              + P+                              +RD +SWT++I  + +     +A
Sbjct: 202 D--ELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDA 259

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           I  F +M   NL+ D      VL+AC  +  L  G ++H YI    +    ++F+ +AL+
Sbjct: 260 IDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYK--DNIFVASALV 317

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           DMY KC NI SA  VF +M  KNVVSW +M+ G    G  +EA+  F  MQ  G++PDDF
Sbjct: 318 DMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDF 377

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           TL  V++SCAN+  LE G   H     + + +   + NALV +Y KCG I+ +  +F  +
Sbjct: 378 TLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEI 437

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             +D  ++TA++ G A  GKA + + +F  M   G++PD+VTF+GVLSACS AGLVE+G 
Sbjct: 438 SFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGN 497

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           + F  M   + + P  +HY CM+DLF RAG I EA + I  MP  PDA  W  LL +C+ 
Sbjct: 498 QIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRF 557

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           +  +++ +   E L+  +P    +Y+L++++Y++K +W+E  +LRK M+++ ++K PGCS
Sbjct: 558 YGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCS 617

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            ++   + + F   DKS+P + +IY  L+++ ++    GY+
Sbjct: 618 WIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYV 658



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 153/532 (28%), Positives = 236/532 (44%), Gaps = 107/532 (20%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK C ++ +    + +H++ +KT      ++ N L+  YA  G I    K+F    HP 
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP- 73

Query: 183 AQRDLVSWTTLIQAYVKMDYPTE-----------------AILSFFDMC----------Q 215
              +L SW T++ AY K+   +E                 +++S +  C           
Sbjct: 74  ---NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYN 130

Query: 216 ANLRPDG------MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
             L+ DG      +    +L   SK G + LG +IH ++    F     VF+ + L+DMY
Sbjct: 131 LMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVV--KFGFMSYVFVGSPLVDMY 188

Query: 270 LKCGNIPSARKVFDEMPVKNVV-------------------------------SWNSMIA 298
            K G I  ARKVFDE+P KNVV                               SW SMI 
Sbjct: 189 SKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMIT 248

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G T  G  ++A+DIFR M+   L+ D +T   VL +C  +  L+ GK VH Y+ +     
Sbjct: 249 GFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKD 308

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           + F+ +ALVDMY KC  I  A  VF+ M C++V S+TAM+VG   +G + +A+  FS+M 
Sbjct: 309 NIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQ 368

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEG----------------------------CKHFL 450
           + GIEPD+ T   V+S+C++   +EEG                            C    
Sbjct: 369 KYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIE 428

Query: 451 DMSRVYNLQPQTEH--YGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACK 505
           D  R++N     +   +  +V  + + G   E + L +SM    L PD   +  +L AC 
Sbjct: 429 DSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACS 488

Query: 506 IHAKVELAEIVMENLVR---FEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
               VE    + E+++      P  D  Y  M +++S   R +EA     KM
Sbjct: 489 RAGLVEKGNQIFESMINEHGIVPIQD-HYTCMIDLFSRAGRIEEARNFINKM 539



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 167/313 (53%), Gaps = 18/313 (5%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI ++REM ++ L  + YT   VL AC    +L+ G+QVHAY ++T    N++V + L+
Sbjct: 258 DAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALV 317

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y  C  IK+   +F         +++VSWT ++  Y +  Y  EA+ +F DM +  + 
Sbjct: 318 DMYCKCKNIKSAEAVF----KKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIE 373

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           PD   L  V+S+C+ L  L  G + H R +T    +    + + NAL+ +Y KCG+I  +
Sbjct: 374 PDDFTLGSVISSCANLASLEEGAQFHARALTSGLISF---ITVSNALVTLYGKCGSIEDS 430

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
            ++F+E+  K+ V+W ++++G    G+  E + +F  M   GLKPD  T + VL++C+  
Sbjct: 431 HRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRA 490

Query: 339 GWLELGKWVHTYLDKNHINTDGFIG-----NALVDMYAKCGRIDQAFGVFRSMK-CRDVY 392
           G +E G  +     ++ IN  G +        ++D++++ GRI++A      M    D  
Sbjct: 491 GLVEKGNQIF----ESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAI 546

Query: 393 SYTAMIVGLAIHG 405
           S+  ++     +G
Sbjct: 547 SWATLLSSCRFYG 559


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 273/459 (59%), Gaps = 20/459 (4%)

Query: 151 NVYVFNTLMRLYAVCGLIKAVH-KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
           N+ ++N++ R YA     + +  ++F        +R++V+WT++I  Y+ +     +   
Sbjct: 15  NIALWNSMFRGYAQSESYREIFCEMF--------ERNVVAWTSMINGYI-LSADLVSARR 65

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
            FD+       D ++  I++S   + GD+    K+   + +       DV   N ++  Y
Sbjct: 66  LFDLAPER---DVVLWNIMVSGYIEGGDMVEARKLFHEMPNR------DVMFWNTVLKGY 116

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTL 328
              GN+ +   +F+EMP +N+ SWN++I G  H G F E L  F+RM     + P+D TL
Sbjct: 117 ATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 176

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
           V VL++CA +G L+LGKWVH Y + + +  + ++GNAL+DMYAKCG I+ A  VFR M  
Sbjct: 177 VTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDT 236

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           +D+ S+  +I GLA+H +   AL++F +M   G +PD +TF+G+L AC+H GLVE+G  +
Sbjct: 237 KDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAY 296

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M+  Y + PQ EHYGCMVD+  RAG + +A+  ++ MP+  D  +W  LLGAC+I+ 
Sbjct: 297 FQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYK 356

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
            VELAE+ ++ L+  EP+    Y++++NIY    RW++  +L+  M++   KK PGCSL+
Sbjct: 357 NVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLI 416

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           EV     EF   D+ HP+  EIY +L  ++   ++ GYI
Sbjct: 417 EVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYI 455



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 158/333 (47%), Gaps = 31/333 (9%)

Query: 73  IENLSLQNPQ--VYLYNFIIQCLS-NANPLEAIALYREMLIKG-LLPNTYTLPYVLKACW 128
           +E L  + P+  ++ +N +I   + N    E +  ++ ML +  + PN  TL  VL AC 
Sbjct: 125 LEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACA 184

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
           +  +L +G+ VH Y+  + L  NVYV N LM +YA CG+I+    +F         +DL+
Sbjct: 185 RLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVF----RGMDTKDLI 240

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
           SW TLI          +A+  FF M  A  +PDG+  + +L AC+ +G +  G    + +
Sbjct: 241 SWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSM 300

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFK 307
            D++  + P +  +  ++DM  + G +  A     +MPV+ + V W  ++         +
Sbjct: 301 ADDYL-IMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVE 359

Query: 308 EALDIFRRMQGLGLK-PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF----- 361
            A    +R+  L  K P ++ ++      +NI + + G+W      K  +   GF     
Sbjct: 360 LAELALQRLIELEPKNPANYVML------SNI-YGDAGRWEDVARLKVAMRDTGFKKLPG 412

Query: 362 -----IGNALVDMYAKCGR---IDQAFGVFRSM 386
                + +A+V+ Y+   R   I++ +GV R +
Sbjct: 413 CSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGL 445



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 23/253 (9%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL-DIFRR--------MQGLGLKPD---- 324
           AR++FD++P  N+  WNSM  G      ++E   ++F R        + G  L  D    
Sbjct: 4   ARQLFDQIPDPNIALWNSMFRGYAQSESYREIFCEMFERNVVAWTSMINGYILSADLVSA 63

Query: 325 --DFTLV----CVLNSCANIGWLELGKWVHTY-LDKNHINTDGFIGNALVDMYAKCGRID 377
              F L      VL +    G++E G  V    L     N D    N ++  YA  G ++
Sbjct: 64  RRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVE 123

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSAC 436
              G+F  M  R+++S+ A+I G A +G  ++ L  F  M S+  + P++ T V VLSAC
Sbjct: 124 ALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSAC 183

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           +  G ++ G K     +    L+        ++D++ + G+I  A+ + + M    D   
Sbjct: 184 ARLGALDLG-KWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMD-TKDLIS 241

Query: 497 WGALLGACKIHAK 509
           W  L+G   +H++
Sbjct: 242 WNTLIGGLAMHSR 254


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 179/529 (33%), Positives = 292/529 (55%), Gaps = 39/529 (7%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           G +P+   +P VLK+C QS +   G Q H +++   +L +V+V   L+  YA  G + + 
Sbjct: 170 GAIPSG-CIPLVLKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSA 228

Query: 172 HKLFHFRQHP-----------------------------QAQRDLVSWTTLIQAYVKMDY 202
             L  F++ P                               +R   SW ++I  Y     
Sbjct: 229 --LMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGE 286

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             EA+  F  M +    P+ + +  V S C+K GDL  G +   +I +       +V +H
Sbjct: 287 FREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQ---NVIVH 343

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
            AL++MY+KC  I  AR  FD MP ++VV+W++MIAG +  G+  E+L++F RM+    K
Sbjct: 344 TALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCK 403

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P++ TLV VL++CA +G  ELG+ +  Y++   +    ++G+AL+DMY KCG + +A  V
Sbjct: 404 PNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSV 463

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F  M+ + V ++ +MI GLA++G A  A+ ++ +M   GI+P+EVTFV +L+AC+HAGLV
Sbjct: 464 FNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLV 523

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLG 502
           ++G   F +M +  ++ PQ EH  C+VDL  ++G + EA   I  M + P+A +W  LL 
Sbjct: 524 DKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLS 583

Query: 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
           AC+ HA VELA++    LV  EP     Y+L++NIY+    W +  ++R  M+ + ++K 
Sbjct: 584 ACRAHADVELAKLAAGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKL 643

Query: 563 PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD----EIMHQSKNHGYI 607
              S +E+ GE + F   D  HP++ EIY ++D    ++   S +H  I
Sbjct: 644 SAYSWIELDGEVHRFLVQDTYHPRSAEIYNVVDGLGLQLERTSPDHELI 692



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/425 (30%), Positives = 211/425 (49%), Gaps = 53/425 (12%)

Query: 86  YNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I C ++     EA+ L+ +ML +G  PN  T+  V   C ++  L  G++  A+ +
Sbjct: 274 WNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRARAW-I 332

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-FRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +   L NV V   LM +Y  C   +A+ +  H F + P  +RD+V+W+T+I  Y +   P
Sbjct: 333 REEDLQNVIVHTALMEMYVKC---RAIDEARHEFDRMP--RRDVVAWSTMIAGYSQNGRP 387

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            E++  F  M   N +P+ + LV VLSAC++LG   LG +I  YI      L+   ++ +
Sbjct: 388 HESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLT--SYLGS 445

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           ALIDMY KCG++  AR VF+ M  K VV+WNSMI GL   G  ++A+ ++R+M G G++P
Sbjct: 446 ALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQP 505

Query: 324 DDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           ++ T V +L +C + G ++ G  +      K H++        +VD+  K GR+      
Sbjct: 506 NEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRL------ 559

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
                                    W+A     +M    +EP+ V +  +LSAC     V
Sbjct: 560 -------------------------WEAYKFICDME---VEPNAVIWSTLLSACRAHADV 591

Query: 443 EEGCKHFLDMSRVYNLQPQTEH-YGCMVDLFGRAGL---IREALDLIKSMPLVP-DAFVW 497
           E      L   ++  L+P     Y  + +++  AGL   +RE  DL++S  L    A+ W
Sbjct: 592 ELA---KLAAGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSW 648

Query: 498 GALLG 502
             L G
Sbjct: 649 IELDG 653



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 105/273 (38%), Gaps = 38/273 (13%)

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
           +AR +FD +P        + ++GL+     +E +++   +   G       +  VL SCA
Sbjct: 126 AARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCA 185

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD------ 390
                  G   H +     +  D F+  ALVD YAK G +D A   F+ M  +D      
Sbjct: 186 QSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNC 245

Query: 391 -------------------------VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
                                      S+ +MI   A  G+  +AL +F +M + G  P+
Sbjct: 246 LITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPN 305

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
            +T   V S C+  G ++ G +      R  +LQ    H   M +++ +   I EA    
Sbjct: 306 AITITTVFSICAKTGDLDTG-RRARAWIREEDLQNVIVHTALM-EMYVKCRAIDEARHEF 363

Query: 486 KSMPLVPDAFVWGALLGA----CKIHAKVELAE 514
             MP   D   W  ++       + H  +EL E
Sbjct: 364 DRMPRR-DVVAWSTMIAGYSQNGRPHESLELFE 395


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 182/529 (34%), Positives = 285/529 (53%), Gaps = 27/529 (5%)

Query: 100 EAIALYREMLIKGLLPNTY--TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           +A++L+  M       ++   +LP  LK+C       +G  +HA ++++   ++ +  N 
Sbjct: 31  DAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANA 90

Query: 158 LMRLYA--VCGLI-----------------KAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
           L+ LY    C  +                 ++V K+F        +RD+VSW TL+    
Sbjct: 91  LLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFD----EMIERDVVSWNTLVLGCA 146

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +     EA+     MC+   RPD   L  VL   ++  D+  G+++H +   N F+   D
Sbjct: 147 EEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFD--SD 204

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           VF+ ++LIDMY  C     + KVFD +PV++ + WNS++AG    G  +EAL IFRRM  
Sbjct: 205 VFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQ 264

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G++P   T   ++  C N+  L  GK +H Y+       + FI ++L+DMY KCG I  
Sbjct: 265 AGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISI 324

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A  +F  M   DV S+TAMI+G A+HG A +AL +F  M     +P+ +TF+ VL+ACSH
Sbjct: 325 AHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSH 384

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
           AGLV++G K+F  MS  Y + P  EH+  + D  GRAG + EA + I  M + P A VW 
Sbjct: 385 AGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWS 444

Query: 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558
            LL AC++H    LAE V + ++  EP   G++++++N+YS+  RW EA  LR+ M+++ 
Sbjct: 445 TLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKG 504

Query: 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +KK P CS +EV  + + F   D+SHP    I   L+    Q    G++
Sbjct: 505 MKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHV 553



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 173/360 (48%), Gaps = 12/360 (3%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           ++   V     ++ C       EA+   R+M  +G  P+++TL  VL    +   ++ G 
Sbjct: 131 IERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGL 190

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           +VH ++ +    S+V+V ++L+ +YA C       K+F         RD + W +L+   
Sbjct: 191 EVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVF----DNLPVRDHILWNSLLAGC 246

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            +     EA+  F  M QA +RP  +    ++  C  L  L  G ++H Y+    F    
Sbjct: 247 AQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFE--D 304

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           +VFI ++LIDMY KCG I  A  +FD+M   +VVSW +MI G    G  +EAL +F RM+
Sbjct: 305 NVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERME 364

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCGR 375
               KP+  T + VL +C++ G ++ G W +     NH      + +  AL D   + G 
Sbjct: 365 LGNAKPNHITFLAVLTACSHAGLVDKG-WKYFKSMSNHYGIVPTLEHFAALADTLGRAGE 423

Query: 376 IDQAFGVFRSMKCRDVYS-YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           +D+A+     M+ +   S ++ ++    +H     A ++  ++ +  +EP  +    VLS
Sbjct: 424 LDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIME--LEPRSIGSHVVLS 481



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 25/243 (10%)

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF--TLVCVLNSCANIGWLELGKWVHTY 350
           W   I      G F +A+ +F RM+           +L   L SCA +G   LG  +H  
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 351 LDKNHINTDGFIGNALVDMYAK--CGRIDQ-------------AF----GVFRSMKCRDV 391
             ++    D F  NAL+++Y K  C  +D              AF     VF  M  RDV
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFL 450
            S+  +++G A  G+  +AL    +M + G  PD  T   VL   +    V+ G + H  
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
                ++          ++D++        ++ +  ++P V D  +W +LL  C  +  V
Sbjct: 196 AFRNGFDSDVFVG--SSLIDMYANCTRTDYSVKVFDNLP-VRDHILWNSLLAGCAQNGSV 252

Query: 511 ELA 513
           E A
Sbjct: 253 EEA 255


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 178/510 (34%), Positives = 293/510 (57%), Gaps = 16/510 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+ + L  G  P+ YT+  ++ AC +  S+R+G Q+H+ +++  L S+  V   L+
Sbjct: 237 EAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLV 296

Query: 160 RLYAVCGLIKAVHKLFH-FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF-DMCQAN 217
            +YA   + +A+      F + P+   D++SWT LI  YV+       +++ F +M   +
Sbjct: 297 DMYAKSNIGQAMDYANKVFERMPK--NDVISWTALISGYVQSGVQENKVMALFGEMLNES 354

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++P+ +    +L +C+ + D   G ++H ++  +  N +    + NAL+ MY + G +  
Sbjct: 355 IKPNHITYSSILKSCASISDHDSGRQVHAHVIKS--NQASAHTVGNALVSMYAESGCMEE 412

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           AR+VF+++  +      SMI  +T    F     I R   G+       T   ++++ A+
Sbjct: 413 ARRVFNQLYER------SMIPCITEGRDFPLDHRIVRMDVGIS----SSTFASLISAAAS 462

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +G L  G+ +H    K    +D F+ N+LV MY++CG ++ A   F  +K R+V S+T+M
Sbjct: 463 VGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSM 522

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I GLA HG A +AL +F +M   G++P++VT++ VLSACSH GLV EG ++F  M R + 
Sbjct: 523 ISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHG 582

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           L P+ EHY CMVDL  R+G+++EAL+ I  MPL  DA VW  LLGAC+ H  +E+ EI  
Sbjct: 583 LIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITA 642

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
           +N+V  EP     Y+L++N+Y+    W E  ++R  M++  + K  G S +EV    +EF
Sbjct: 643 KNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEF 702

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R GD SHP+  +IY  LD ++ Q K  GY+
Sbjct: 703 RAGDTSHPRAQDIYGKLDTLVRQIKGMGYV 732



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 156/311 (50%), Gaps = 10/311 (3%)

Query: 133 LRVGQQVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
           LR+G+ +H   ++  LL  +  V N+L+ LY+ CG + +   +F      +  RD+VSWT
Sbjct: 64  LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVF---DGMRGLRDIVSWT 120

Query: 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
            +     +      ++L   +M ++ L P+   L     AC    +L   +        +
Sbjct: 121 AMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFP-HELYCLVGGVVLGLVH 179

Query: 252 HFNL-SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
              L   DV + +ALIDM  + G++ SARKVFD +  K VV W  +I+        +EA+
Sbjct: 180 KMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAV 239

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           ++F      G +PD +T+  ++++C  +G + LG  +H+   +  + +D  +   LVDMY
Sbjct: 240 ELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMY 299

Query: 371 AKCG---RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG-KAWKALDIFSEMSQVGIEPDE 426
           AK      +D A  VF  M   DV S+TA+I G    G +  K + +F EM    I+P+ 
Sbjct: 300 AKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNH 359

Query: 427 VTFVGVLSACS 437
           +T+  +L +C+
Sbjct: 360 ITYSSILKSCA 370


>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
          Length = 659

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 189/517 (36%), Positives = 287/517 (55%), Gaps = 28/517 (5%)

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           Y+EM   G+LP+ +T P VL+AC +++ L +G+ VH ++    +  N++  N LM +YA 
Sbjct: 138 YQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAK 197

Query: 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI 224
           CG + +  K+F        QRD+VSW ++I +Y  +    EA+  F  M      P G+I
Sbjct: 198 CGDLASARKVFD----GMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLI 253

Query: 225 --------------LVIVLSACSKLGDLSLGIKIH----RYITDNHFNLSPDVFIHNALI 266
                         LVI L+ACS++G L LG +IH    R   D   ++S      NALI
Sbjct: 254 REMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVS------NALI 307

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
            MY +C ++  AR +F  +    VV+WN+M++        +EA  IFR M   G+KP+  
Sbjct: 308 TMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYV 367

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T+V  L  CA +  L+ G+ +H ++ K+       + N+L+DMY+K GR+  A  VF +M
Sbjct: 368 TVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTM 427

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
              D+ SYT+MI G  + GK   AL +F +M   GI+PD +  V VLSACSH+GLV EG 
Sbjct: 428 DDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGE 487

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           + F  M   Y ++PQ EHY CM+DL+ RAGL+ +A +++   P  P + +W AL+GAC  
Sbjct: 488 ELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHD 547

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
              +E+ E     L+    E  G Y+L+ N+Y++   W E   +RK M++  V K PG +
Sbjct: 548 RGNIEIGERAARKLLEMRTENAGHYVLIANMYAAAGCWDELATVRKLMRDLGVTKAPGLA 607

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603
             ++   F  F  GD+S+P   EIY +LDE+  Q +N
Sbjct: 608 WTDLGNGFTPFLVGDRSNPLAPEIYVVLDELSEQMRN 644



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 201/429 (46%), Gaps = 62/429 (14%)

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           LR+G Q+HA S+   L  +  +   L+ +Y                 HP       S   
Sbjct: 89  LRLGVQLHALSLSLGLSRHPILLPRLLSVYT---------------SHPSLLPSAASVAA 133

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
            + AY +M              +  + PD      VL AC++  +L LG  +H +     
Sbjct: 134 ALAAYQEMG-------------KNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGA- 179

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
             +  ++F  NAL+ MY KCG++ SARKVFD M  ++VVSWNSMI+     GQ+ EA+++
Sbjct: 180 -GMDGNLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMEL 238

Query: 313 FRRMQGLGLKP--------------DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           FRRM+  G +P              D  TLV  LN+C+ +GWL LGK +H    +   + 
Sbjct: 239 FRRMRDEGTEPVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQ 298

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
              + NAL+ MYA+C  ++ A  +FR ++C  V ++  M+   A+   A +A  IF EM 
Sbjct: 299 VESVSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMI 358

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEG-------CKHFLDMSRVYNLQPQTEHYGCMVDL 471
             G++P+ VT V  L+ C+    ++ G        KH     R+         +  ++D+
Sbjct: 359 CRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLL--------WNSLIDM 410

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
           + ++G +  A ++  +M    D   + +++    +  K  +A  + E ++    + D  +
Sbjct: 411 YSKSGRLSVAQNVFDTMDDC-DMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPD--H 467

Query: 532 ILMTNIYSS 540
           I+M  + S+
Sbjct: 468 IIMVTVLSA 476


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 203/643 (31%), Positives = 334/643 (51%), Gaps = 64/643 (9%)

Query: 20  QQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQ-----HQTQILYDKIISLSRGNEI- 73
           Q  S LH +  + S  S   L+  H    K GS Q     +    LY K  +L   +++ 
Sbjct: 34  QPCSFLHSTTSIGSPPS---LRALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLF 90

Query: 74  ENLSLQNPQVYLYNFIIQCLSNANPLEAI--ALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
           + ++ +N Q +    +I   + A     +  +L+REM   G  PN YTL  VLK C +  
Sbjct: 91  DEITHKNTQTW--TILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSREN 148

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH--------------- 176
           +++ G+ +HA+ ++  +  +V + N+++ LY  C   +     F                
Sbjct: 149 NIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIG 208

Query: 177 --------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
                         FR  P   +D+VSW T+I   ++  Y   A+   + M         
Sbjct: 209 AYLREGDVEKSLEMFRNFPN--KDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSP 266

Query: 223 MILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
           +   I L   S L  + +G ++H R +T   F L+ D +I ++L++MY KCG +  A  +
Sbjct: 267 VTFSIALILVSSLSLVEVGRQLHGRVLT---FGLNSDGYIRSSLVEMYGKCGRMDKASTI 323

Query: 282 FDEMPVK----------------NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
             ++P+                  +VSW+SM++G    G++++ +  FR M    +  D 
Sbjct: 324 LKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDI 383

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
            T+  ++++CAN G LE GK +H Y+ K  +  D ++G++L+DMY+K G +D A  +F  
Sbjct: 384 RTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQ 443

Query: 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
           +K  +V  +T+MI G A+HG+  +A+ +F  M  +GI P+EVTFVGVL+ACSH GL+EEG
Sbjct: 444 IKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEG 503

Query: 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505
           C++F  M   Y++ P+ EHY  MV+L+GRAG + EA + I    +     VW + L +C+
Sbjct: 504 CRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCR 563

Query: 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGC 565
           +H    + + V E L++  P    AYIL++N+ SS ++W EA  +R  M +R VKK PG 
Sbjct: 564 LHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQ 623

Query: 566 SLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
           S V++  + + F  GD+SHP+  EIY  LD ++ + K  GY L
Sbjct: 624 SWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSL 666


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 193/573 (33%), Positives = 301/573 (52%), Gaps = 13/573 (2%)

Query: 41  KQFHAFIIKTGSPQH---QTQI--LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           +Q H  +IK+G   H   Q  +  +Y +   +   +++  +      +   + I      
Sbjct: 278 RQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQL 337

Query: 96  ANPLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
              +EA+ L+R+M  +G   PN +    V  AC        G+Q+H    K  L  NV+ 
Sbjct: 338 GYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFA 397

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
             +L  +YA  G + +  + F+  + P    DLVSW  +I A+       EAI  F  M 
Sbjct: 398 GCSLCDMYAKFGFLPSAIRAFYQIESP----DLVSWNAIIAAFSDSGDVNEAIYFFCQMM 453

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              L PDG+  + +L AC     ++ G +IH YI      L  +  + N+L+ MY KC N
Sbjct: 454 HTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIK--IGLDKEAAVCNSLLTMYTKCSN 511

Query: 275 IPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
           +  A  VF ++    N+VSWN++++      Q  E   +F+ M     KPD+ T+  +L 
Sbjct: 512 LHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILG 571

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +CA +  LE+G  VH +  K+ +  D  + N L+DMYAKCG +  A  VF S +  D+ S
Sbjct: 572 TCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVS 631

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           ++++IVG A  G   +AL++F  M  +G++P+EVT++GVLSACSH GLVEEG   +  M 
Sbjct: 632 WSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTME 691

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
               + P  EH  CMVDL  RAG + EA + IK M   PD  +W  LL +CK H  V++A
Sbjct: 692 IELGIPPTREHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIA 751

Query: 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
           E   EN+++ +P    A +L++NI++S   WKE  +LR  MK+  V+K PG S + V  +
Sbjct: 752 ERAAENILKLDPSNSAALVLLSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAVKDQ 811

Query: 574 FYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            + F   D SH +  +IY +L+++  Q  + GY
Sbjct: 812 IHVFFSEDNSHQQRGDIYTMLEDLWLQMLDDGY 844



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 194/386 (50%), Gaps = 8/386 (2%)

Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
           AC   +SL+ G+++H + +K+    ++ + N ++ +Y  CG +K   K F   Q     R
Sbjct: 166 ACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQ----LR 221

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           ++VSWT +I  Y +     +AI+ +  M Q+   PD +    ++ AC   GD+ LG ++H
Sbjct: 222 NVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLH 281

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
            ++  + ++    +   NALI MY + G I  A  VF  +  K+++SW SMI G T  G 
Sbjct: 282 GHVIKSGYD--HHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGY 339

Query: 306 FKEALDIFRRMQGLGL-KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364
             EAL +FR M   G  +P++F    V ++C ++   E G+ +H    K  +  + F G 
Sbjct: 340 EIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGC 399

Query: 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
           +L DMYAK G +  A   F  ++  D+ S+ A+I   +  G   +A+  F +M   G+ P
Sbjct: 400 SLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMP 459

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           D +TF+ +L AC     + +G +    + ++  L  +      ++ ++ +   + +A ++
Sbjct: 460 DGITFLSLLCACGSPVTINQGTQIHSYIIKI-GLDKEAAVCNSLLTMYTKCSNLHDAFNV 518

Query: 485 IKSMPLVPDAFVWGALLGACKIHAKV 510
            K +    +   W A+L AC  H + 
Sbjct: 519 FKDVSENANLVSWNAILSACLQHKQA 544



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 232/479 (48%), Gaps = 21/479 (4%)

Query: 33  SSKSVGQLKQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNE-IENLSLQNPQVYLY 86
           S +S+   K+ H  I+K+        Q+    +Y K  SL    +  + + L+N  V  +
Sbjct: 169 SIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRN--VVSW 226

Query: 87  NFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
             +I   S N    +AI +Y +ML  G  P+  T   ++KAC  +  + +G+Q+H + +K
Sbjct: 227 TIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIK 286

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
           +    ++   N L+ +Y   G I     +F       + +DL+SW ++I  + ++ Y  E
Sbjct: 287 SGYDHHLIAQNALISMYTRFGQIVHASDVFTMI----STKDLISWASMITGFTQLGYEIE 342

Query: 206 AILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           A+  F DM  Q   +P+  I   V SAC  L +   G +IH       F L  +VF   +
Sbjct: 343 ALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCA--KFGLGRNVFAGCS 400

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L DMY K G +PSA + F ++   ++VSWN++IA  +  G   EA+  F +M   GL PD
Sbjct: 401 LCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPD 460

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
             T + +L +C +   +  G  +H+Y+ K  ++ +  + N+L+ MY KC  +  AF VF+
Sbjct: 461 GITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFK 520

Query: 385 SM-KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
            + +  ++ S+ A++     H +A +   +F  M     +PD +T   +L  C+    +E
Sbjct: 521 DVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLE 580

Query: 444 EGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
            G + H   +     +     +   ++D++ + G ++ A D+  S    PD   W +L+
Sbjct: 581 VGNQVHCFSVKSGLVVDVSVSNR--LIDMYAKCGSLKHARDVFGSTQ-NPDIVSWSSLI 636



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 167/325 (51%), Gaps = 9/325 (2%)

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSF-FDMCQANLRPDGMILVIVLSACSKLGDLSL 240
           Q  R+L S  + I    K  +  EA+ +F F    ++++ +      ++ AC+ +  L  
Sbjct: 117 QHSREL-STNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKY 175

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G KIH +I  +  N  PD+ + N +++MY KCG++  ARK FD M ++NVVSW  MI+G 
Sbjct: 176 GKKIHDHILKS--NCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGY 233

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
           +  GQ  +A+ ++ +M   G  PD  T   ++ +C   G ++LG+ +H ++ K+  +   
Sbjct: 234 SQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHL 293

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
              NAL+ MY + G+I  A  VF  +  +D+ S+ +MI G    G   +AL +F +M + 
Sbjct: 294 IAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQ 353

Query: 421 GI-EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC-MVDLFGRAGLI 478
           G  +P+E  F  V SAC  + L  E  +    M   + L  +    GC + D++ + G +
Sbjct: 354 GFYQPNEFIFGSVFSAC-RSLLEPEFGRQIHGMCAKFGLG-RNVFAGCSLCDMYAKFGFL 411

Query: 479 REALDLIKSMPLVPDAFVWGALLGA 503
             A+     +   PD   W A++ A
Sbjct: 412 PSAIRAFYQIE-SPDLVSWNAIIAA 435


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 193/571 (33%), Positives = 308/571 (53%), Gaps = 15/571 (2%)

Query: 41  KQFHAFIIKTGSPQH----QTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQC-LSN 95
           ++ HA ++K+GS  +       ++Y K   +     +    +       +N ++ C + N
Sbjct: 286 RELHAALLKSGSEVNIQCNALLVMYTKCGRVDSALRVFR-EIDEKDYISWNSMLSCYVQN 344

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
               EAI    EML  G  P+   +  +  A      L  G++VHAY++K  L S+  V 
Sbjct: 345 GLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVG 404

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           NTLM +Y  C  I+    +F   +     +D +SWTT+I  Y +     EA+  F +  +
Sbjct: 405 NTLMDMYMKCRYIEYSAHVFDRMR----IKDHISWTTIITCYAQSSRHIEALEIFREAQK 460

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             ++ D M++  +L ACS L  + L  ++H Y   N      D+ + N +ID+Y +CG +
Sbjct: 461 EGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL---LDLVVKNRIIDIYGECGEV 517

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             + K+F+ +  K++V+W SMI    + G   EAL +F  MQ   ++PD   LV +L + 
Sbjct: 518 YHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAI 577

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
             +  L  GK VH +L + + + +  I ++LVDMY+ CG +  A  VF ++KC+D+  +T
Sbjct: 578 GGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWT 637

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS-R 454
           AMI    +HG   +A+D+F  M Q G+ PD V+F+ +L ACSH+ LV EG K +LDM   
Sbjct: 638 AMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEG-KCYLDMMMS 696

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y L+P  EHY C+VDL GR+G   EA + IKSMPL P + VW +LLGAC++H   ELA 
Sbjct: 697 TYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAV 756

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
           +    L+  EP+  G Y+L++N+++   +W  A ++R ++ ER ++K P CS +E+    
Sbjct: 757 VAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNV 816

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           + F   D SH     I   L EI  + +  G
Sbjct: 817 HTFTTRDNSHRDAERINLKLAEITERLRKEG 847



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 148/516 (28%), Positives = 253/516 (49%), Gaps = 50/516 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENLSL-----QNPQVY 84
           + + K+V Q  Q HA  + TGS +     L  K++ +  +   + +  L      +  V+
Sbjct: 68  VAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVF 127

Query: 85  LYNFIIQC-LSNANPLEAIALYREMLIK---GLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            +N +I   LS+ +  EA+ +YR M +    G+ P+  TL  VLKA       R G +VH
Sbjct: 128 SWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVH 187

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
             ++K  L  + +V N L+ +YA CG++ +  ++F         RD+ SW ++I   ++ 
Sbjct: 188 GLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDG---RDVASWNSMISGCLQN 244

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               +A+  F  M +A L  +    V VL  C++L  L+LG ++H  +  +      +V 
Sbjct: 245 GMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKS----GSEVN 300

Query: 261 IH-NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
           I  NAL+ MY KCG + SA +VF E+  K+ +SWNSM++     G + EA++    M   
Sbjct: 301 IQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRG 360

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G +PD   +V + ++  ++GWL  GK VH Y  K  +++D  +GN L+DMY KC  I+ +
Sbjct: 361 GFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYS 420

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-- 437
             VF  M+ +D  S+T +I   A   +  +AL+IF E  + GI+ D +    +L ACS  
Sbjct: 421 AHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGL 480

Query: 438 ---------HAGLVEEGCKHFLDMSRVYNL------------------QPQTEHYGCMVD 470
                    H   +  G    +  +R+ ++                  Q     +  M++
Sbjct: 481 ETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMIN 540

Query: 471 LFGRAGLIREALDL---IKSMPLVPDAFVWGALLGA 503
            +  +GL+ EAL L   ++S  + PD+    ++LGA
Sbjct: 541 CYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGA 576



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 169/340 (49%), Gaps = 13/340 (3%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS--NVYVFNTLMRLYAVCGLIK 169
           G  P      +VL      +++  G QVHA+++ T  L   + ++   L+ +Y  CG + 
Sbjct: 53  GRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVA 112

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM---CQANLRPDGMILV 226
               LF       + R + SW  LI AY+      EA+  +  M     + + PDG  L 
Sbjct: 113 DARLLFD----GMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLA 168

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM- 285
            VL A    GD   G ++H     +  + S   F+ NALI MY KCG + SA +VF+ M 
Sbjct: 169 SVLKASGVEGDGRCGCEVHGLAVKHGLDRS--TFVANALIAMYAKCGILDSAMRVFELMH 226

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
             ++V SWNSMI+G    G F +ALD+FR MQ   L  + +T V VL  C  +  L LG+
Sbjct: 227 DGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGR 286

Query: 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG 405
            +H  L K+    +    NAL+ MY KCGR+D A  VFR +  +D  S+ +M+     +G
Sbjct: 287 ELHAALLKSGSEVN-IQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNG 345

Query: 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
              +A++  SEM + G +PD    V + SA  H G +  G
Sbjct: 346 LYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNG 385


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 174/491 (35%), Positives = 276/491 (56%), Gaps = 11/491 (2%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           PN YTL   LKAC  ++ +  G  +H   ++T    +  V ++L+ LY+  G I    ++
Sbjct: 317 PNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRV 376

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC------QANLRPDGMILVIV 228
           F         R L +W  +I  Y    +  +A+L F +M       +   +PD      +
Sbjct: 377 FDC---AGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASL 433

Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
           L AC  LG    G ++H  +  + F+ + +  +  AL+DMY+KCG +P A +VF+ +  K
Sbjct: 434 LKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERK 493

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
           N + W +++ G    GQ  EAL++FRR    G + D   L  ++   A+   +E G+ VH
Sbjct: 494 NAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVH 553

Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
            Y  K+   TD   GN++VDMY KCG  D+A  +FR +  R+V S+T MI GL  HG   
Sbjct: 554 CYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGR 613

Query: 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCM 468
           +A+ +F EM   G+EPDEVT++ +LSACSHAGLV+E  ++F  + R   ++P+ EHY CM
Sbjct: 614 EAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACM 673

Query: 469 VDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
           VDL GRAG +REA DLI++MP+ P   VW  LL AC++H  V +     + L+  + +  
Sbjct: 674 VDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNP 733

Query: 529 GAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG--DKSHPK 586
             Y+ ++N+++    W+E  K+R  M+ R +KK  GCS VE+  E + F  G  +++HP+
Sbjct: 734 VNYVTLSNVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKEVHFFYGGGDEEAHPQ 793

Query: 587 TLEIYKLLDEI 597
             +I ++L ++
Sbjct: 794 AGDIRRVLRDV 804



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 128/484 (26%), Positives = 216/484 (44%), Gaps = 65/484 (13%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+A  +  SLR G Q+H    K    S+  + N L+ +YA CG +    ++F   +   
Sbjct: 223 LLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMR--- 279

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLG 241
             R++VSWT L+  +++    T  +    +M  A+   P+   L   L AC    D+  G
Sbjct: 280 -DRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAG 338

Query: 242 IKIH----RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV-KNVVSWNSM 296
           + IH    R   + H+       + ++L+ +Y K G I  AR+VFD   + + + +WN+M
Sbjct: 339 VGIHGLCVRTGYEEHY------VVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAM 392

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGL------KPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           I+G  H G  ++AL +FR M+          +PD+FT   +L +C  +G    G  VH  
Sbjct: 393 ISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAA 452

Query: 351 LDKNHINT--DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
           +  +  +T  +  +  ALVDMY KCGR+  A  VF  ++ ++   +T ++VG A  G+  
Sbjct: 453 MAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVM 512

Query: 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG----C--------------KHFL 450
           +AL++F    + G   D      ++   +   LVE+G    C                 +
Sbjct: 513 EALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIV 572

Query: 451 DMSRVYNLQPQTEH------------YGCMVDLFGRAGLIREALDLIKSM---PLVPDAF 495
           DM     L  + E             +  M++  G+ GL REA+ + + M    + PD  
Sbjct: 573 DMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEV 632

Query: 496 VWGALLGACKIHAKVE-----LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            + ALL AC     V+      + I  +  VR + E    Y  M ++       +EA  L
Sbjct: 633 TYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAE---HYACMVDLLGRAGELREARDL 689

Query: 551 RKKM 554
            + M
Sbjct: 690 IRTM 693



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 98/203 (48%), Gaps = 10/203 (4%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           +EA+ L+R     G   + + L  ++        +  G+QVH Y +K+   ++V   N++
Sbjct: 512 MEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSI 571

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y  CGL     ++  FR+ P   R++VSWTT+I    K     EA+  F +M    +
Sbjct: 572 VDMYLKCGLPDEAERM--FREIP--ARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGV 627

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYIT--DNHFNLSPDVFIHNALIDMYLKCGNIP 276
            PD +  + +LSACS  G   L  +  RY +       + P    +  ++D+  + G + 
Sbjct: 628 EPDEVTYLALLSACSHAG---LVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELR 684

Query: 277 SARKVFDEMPVKNVVS-WNSMIA 298
            AR +   MP++  V  W ++++
Sbjct: 685 EARDLIRTMPMEPTVGVWQTLLS 707


>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
          Length = 1596

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/486 (39%), Positives = 279/486 (57%), Gaps = 17/486 (3%)

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC--GLIKAVHKLFHFRQHPQAQRDLVS 189
           ++R  + +HA  +   L  N Y  + L+   A+   G +     +F   Q+P    +L +
Sbjct: 16  NMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNP----NLFA 71

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
           + TLI+AY +   P  A+  F  M    N+ PD      ++SAC+    + LG +IH ++
Sbjct: 72  YNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWV 131

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
             N    S D  +  AL+  Y +C  +  ARK+FDE+P  +VV WN ++ G   RG   E
Sbjct: 132 LKNGV-ASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPE 190

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALV 367
           AL+ FR M   G++PD+F L   L  CA +G L+ GKW+H Y+ K   +  D FIG ALV
Sbjct: 191 ALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALV 250

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS-QVGIEPDE 426
           DMYAKCG ID++  VF  M  R+V+S++AMI G A+HG   KA+     M  + G+ PD 
Sbjct: 251 DMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDG 310

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           V  +GV+ AC+HAGL EEG     +M   Y + P+ EHY CMVDL  RAG + EAL LI+
Sbjct: 311 VVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKLIR 370

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF----EPEGDGAYILMTNIYSSKN 542
            MP+ P A VWGALL  C+ H  V+LAE+    L+        E DGAY+ ++NIY +  
Sbjct: 371 RMPMKPRAAVWGALLSGCRTHNNVDLAELAARELLMVGNGDGTEEDGAYVQLSNIYLAAQ 430

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           + ++A ++R+ + ++++K  PGCSL+EV GE  +F  GD SHP   +I+++LD +   S 
Sbjct: 431 KCEDACRIRRMIGDKRIKTKPGCSLIEVEGEVNQFVSGDISHPCLAQIHEMLDLV---SL 487

Query: 603 NHGYIL 608
            H Y L
Sbjct: 488 QHSYKL 493



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 121/391 (30%), Positives = 201/391 (51%), Gaps = 29/391 (7%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS---LSRGNEIENLSL-----QNPQV 83
           +S  ++ Q K  HA  I  G   H       K+IS   LS    +   SL     QNP +
Sbjct: 12  QSCSNMRQFKAIHALFIVNG--LHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNL 69

Query: 84  YLYNFIIQCLS-NANPLEAIALYREMLI-KGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           + YN +I+  S ++ P  A+  ++ ML  + + P+ +T P+++ AC  S  + +G+Q+H 
Sbjct: 70  FAYNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHN 129

Query: 142 YSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           + +K  +  S+ +V   L+R YA C  +    KLF   + P    D+V W  L+  YV+ 
Sbjct: 130 WVLKNGVASSDRHVQTALVRFYAECCAMGDARKLFD--EIPNL--DVVQWNVLLNGYVRR 185

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               EA+ +F +M  + + PD   L   L  C++LG L  G  IH Y+T   + L  DVF
Sbjct: 186 GLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKW-LEADVF 244

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GL 319
           I  AL+DMY KCG I  + +VF+ M  +NV SW++MI G    G  ++A+    RMQ   
Sbjct: 245 IGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVED 304

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-----NALVDMYAKCG 374
           GL+PD   L+ V+ +CA+ G  E G+++   ++  +    G +      + +VD+  + G
Sbjct: 305 GLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARY----GILPKHEHYSCMVDLLCRAG 360

Query: 375 RIDQAFGVFRSMKCRDVYS-YTAMIVGLAIH 404
           ++D+A  + R M  +   + + A++ G   H
Sbjct: 361 QLDEALKLIRRMPMKPRAAVWGALLSGCRTH 391


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/524 (35%), Positives = 280/524 (53%), Gaps = 39/524 (7%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRL---YAVCGLIKAVH 172
           N Y     L+ C + + L+   Q+HA  +KT L+ + Y     +           +    
Sbjct: 13  NLYETMSCLQRCSKQEELK---QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQ 69

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
            +F     P    D   W  +I+ +   D P  ++L +  M  ++   +      +L AC
Sbjct: 70  IVFDGFDRP----DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKAC 125

Query: 233 SKLGDLSLGIKIHRYITD--------------------NHFNLS---------PDVFIHN 263
           S L       +IH  IT                      +F L+         PD    N
Sbjct: 126 SNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWN 185

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           ++I  Y+K G +  A  +F +M  KN +SW +MI+G       KEAL +F  MQ   ++P
Sbjct: 186 SVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEP 245

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D+ +L   L++CA +G LE GKW+H+YL+K  I  D  +G  L+DMYAKCG +++A  VF
Sbjct: 246 DNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVF 305

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
           +++K + V ++TA+I G A HG   +A+  F EM ++GI+P+ +TF  VL+ACS+ GLVE
Sbjct: 306 KNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVE 365

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG   F  M R YNL+P  EHYGC+VDL GRAGL+ EA   I+ MPL P+A +WGALL A
Sbjct: 366 EGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKA 425

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C+IH  +EL E + E L+  +P   G Y+   NI++   +W +A + R+ MKE+ V K P
Sbjct: 426 CRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVP 485

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GCS + + G  +EF  GD+SHP+  +I      +  + + +GY+
Sbjct: 486 GCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYV 529



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 134/459 (29%), Positives = 220/459 (47%), Gaps = 51/459 (11%)

Query: 5   LTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQ---TQILY 61
           + V S S   + N ++ +S L +  + E      +LKQ HA ++KTG  Q     T+ L 
Sbjct: 1   MNVISCSFSLEHNLYETMSCLQRCSKQE------ELKQIHARMLKTGLMQDSYAITKFLS 54

Query: 62  DKIISLSRG----NEIENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPN 116
             I S S       +I       P  +L+N +I+  S ++ P  ++ LY+ ML      N
Sbjct: 55  FCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHN 114

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
            YT P +LKAC    +     Q+HA   K    ++VY  N+L+  YAV G  K  H LF 
Sbjct: 115 AYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFD 174

Query: 177 FRQHPQ---------------------------AQRDLVSWTTLIQAYVKMDYPTEAILS 209
               P                            A+++ +SWTT+I  YV+ D   EA+  
Sbjct: 175 RIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQL 234

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F +M  +++ PD + L   LSAC++LG L  G  IH Y+  N   +  D  +   LIDMY
Sbjct: 235 FHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYL--NKTRIRMDSVLGCVLIDMY 292

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            KCG +  A +VF  +  K+V +W ++I+G  + G  +EA+  F  MQ +G+KP+  T  
Sbjct: 293 AKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFT 352

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCGRIDQAFGVFRSMK 387
            VL +C+  G +E GK +   +++++ N    I +   +VD+  + G +D+A    + M 
Sbjct: 353 AVLTACSYTGLVEEGKLIFYSMERDY-NLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMP 411

Query: 388 CR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
            + +   + A++    IH    K +++  E+ ++ I  D
Sbjct: 412 LKPNAVIWGALLKACRIH----KNIELGEEIGEILIAID 446


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 177/496 (35%), Positives = 287/496 (57%), Gaps = 18/496 (3%)

Query: 116 NTYTLPYVLKAC---WQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           +  +L  ++ AC     S  LR G  VH   +K     + ++ N+++ +Y+ C  +    
Sbjct: 161 DVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAW 220

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ---ANLRPDGMILVIVL 229
           ++F+    P  QRD+VSW +LI  +        A+ +F DM     + + P+ + ++ +L
Sbjct: 221 RVFN--GIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALL 278

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNL--SPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
            +C++LG +     +H YI+  H +L  + DV +  AL+DM+ +CGN+  AR++FD +  
Sbjct: 279 KSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEG 338

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRM------QGLGLKPDDFTLVCVLNSCANIGWL 341
           KNVV W++MIAG       +EAL +FR+M       G+ +KP+  TLV V+ +C+ +G  
Sbjct: 339 KNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGAS 398

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--KCRDVYSYTAMIV 399
                +H Y     ++ D  I +AL+DM AKCG I+    VF  M    R V S+++MI 
Sbjct: 399 RSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIG 458

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
              IHG+  +AL++FSEM   G EP+E+T++ VLSACSHAGLVE+G   F  M + Y + 
Sbjct: 459 AEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMS 518

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  +HY C+VDL GRAG + EA ++I +MP+  D  +WG+LL AC +H   +L EIV + 
Sbjct: 519 PTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKK 578

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           ++  +    G ++L+ N+Y    RW + +++R +++   ++K PG S +E+  E Y F  
Sbjct: 579 ILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMA 638

Query: 580 GDKSHPKTLEIYKLLD 595
            D+SHP++  IYK LD
Sbjct: 639 EDRSHPESEMIYKELD 654



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 212/460 (46%), Gaps = 33/460 (7%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           S+ +   + +N +I   +  NP  A+  +  M    +  N +T P +LKAC   + L   
Sbjct: 12  SISHKDTFHWNSLIAKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            QVHAY  +  L ++ +    L+  Y  CG   A +    F + P+   D+VSWT LI A
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCG--HAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 197 YVKMDYPTEAILSFFDM-----------CQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           Y       EA  +F  M           C  ++   G ++      C     L  G  +H
Sbjct: 130 YSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGS-NCLRRGSAVH 188

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--KNVVSWNSMIAGLTHR 303
             +    F +S    + N+++ MY  C ++  A +VF+ +P+  ++VVSWNS+I+G T  
Sbjct: 189 GLVVKYGFGVS--THLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLN 246

Query: 304 GQFKEALDIFRRMQGLG---LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH----I 356
           G+ + AL  F  M   G   ++P+  T++ +L SCA +G +E   WVH Y+   H    +
Sbjct: 247 GEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLV 306

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
             D  +  AL+DM+A+CG +  A  +F  ++ ++V  ++AMI G        +AL +F +
Sbjct: 307 AKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQ 366

Query: 417 M----SQVGIE--PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           M    + VG+E  P+ VT V V++ACS  G            +    L         ++D
Sbjct: 367 MLMEGNMVGVEVKPNAVTLVSVIAACSRLG-ASRSASMIHKYAVATGLDQDARIASALID 425

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFV-WGALLGACKIHAK 509
           +  + G I     +   M       V W +++GA  IH +
Sbjct: 426 MCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGE 465



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 106/246 (43%), Gaps = 13/246 (5%)

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K+   WNS+IA    +   + AL  F RMQ   +  ++FT   +L +CA +  L     V
Sbjct: 16  KDTFHWNSLIAKNATQNP-QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--KCRDVYSYTAMIVGLAIHG 405
           H YL +  +  D F   ALVD Y KCG    A  VF  M     DV S+TA+I   + +G
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 406 KAWKALDIFSEMSQV-GIEPDEVTFVGVLSACSHAGLVEEGCKH--FLDMSRVYNLQPQ- 461
              +A   F  M  + G +  E   V V+S  +       GC        S V+ L  + 
Sbjct: 135 CVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKY 194

Query: 462 ----TEHYG-CMVDLFGRAGLIREALDLIKSMPLVP-DAFVWGALLGACKIHAKVELAEI 515
               + H G  MV ++     +  A  +   +P+   D   W +L+    ++ + E A  
Sbjct: 195 GFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALR 254

Query: 516 VMENLV 521
             E++V
Sbjct: 255 TFEDMV 260


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 188/566 (33%), Positives = 299/566 (52%), Gaps = 33/566 (5%)

Query: 72  EIENLSLQNPQ--VYLYNFIIQCLSN-ANPLEAIALYREMLIK-GLLPNTYTLPYVLKAC 127
           ++E L    P+     YN +I   S+  +P  ++ LYR +L +  + P   TL  ++   
Sbjct: 97  DMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVA 156

Query: 128 WQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA---- 183
                  +G  VH   ++    +  +V + L+ +YA  GLI+   ++F   +        
Sbjct: 157 SALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYN 216

Query: 184 -----------------------QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
                                   RD ++WTT++    +     EA+  F  M    +  
Sbjct: 217 TLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGI 276

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D      +L+AC  L     G +IH YIT   +    +VF+ +AL+DMY KC +I  A  
Sbjct: 277 DQYTFGSILTACGALAASEEGKQIHAYITRTWYE--DNVFVGSALVDMYSKCRSIRLAEA 334

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VF  M  +N++SW +MI G       +EA+  F  MQ  G+KPDDFTL  V++SCAN+  
Sbjct: 335 VFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLAS 394

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           LE G   H     + +     + NALV +Y KCG I+ A  +F  M   D  S+TA++ G
Sbjct: 395 LEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTG 454

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
            A  GKA + +D+F +M   G++PD VTF+GVLSACS AGLVE+GC +F  M + +++ P
Sbjct: 455 YAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVP 514

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
             +HY CM+DL+ R+G  +EA + IK MP  PDAF W  LL +C++   +E+ +   ENL
Sbjct: 515 IDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENL 574

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
           +  +P+   +Y+L+ +++++K +W E   LR+ M++R+VKK PGCS ++   + + F   
Sbjct: 575 LETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSAD 634

Query: 581 DKSHPKTLEIYKLLDEIMHQSKNHGY 606
           D+SHP +  IY+ L+ +  +    GY
Sbjct: 635 DQSHPFSSRIYEKLEWLNSKMAEEGY 660



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 145/509 (28%), Positives = 227/509 (44%), Gaps = 81/509 (15%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           P T+ L ++L A  +S  L   ++V           N++  N L+   A   L+  + +L
Sbjct: 46  PPTFLLNHLLTAYAKSGRLARARRV----FDEMPDPNLFTRNALLSALAHSRLVPDMERL 101

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACS 233
           F        +RD VS+  LI  +     P  ++  +  +  + ++RP  + L  ++   S
Sbjct: 102 FA----SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVAS 157

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV-- 291
            L D +LG  +H  +           F+ + L+DMY K G I  AR+VF EM  K VV  
Sbjct: 158 ALSDRALGHSVHCQVL--RLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMY 215

Query: 292 -----------------------------SWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
                                        +W +M+ GLT  G   EALD+FRRM+  G+ 
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVG 275

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            D +T   +L +C  +   E GK +H Y+ +     + F+G+ALVDMY+KC  I  A  V
Sbjct: 276 IDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAV 335

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           FR M CR++ S+TAMIVG   +  + +A+  FSEM   GI+PD+ T   V+S+C++   +
Sbjct: 336 FRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASL 395

Query: 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL- 501
           EEG + F  ++ V  L         +V L+G+ G I +A  L   M    D   W AL+ 
Sbjct: 396 EEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVT 453

Query: 502 GACKIHAKVELAEIVMENLVR-FEPEG--------------------------------- 527
           G  +     E  ++  + LV   +P+G                                 
Sbjct: 454 GYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIV 513

Query: 528 --DGAYILMTNIYSSKNRWKEALKLRKKM 554
             D  Y  M ++YS   R+KEA +  K+M
Sbjct: 514 PIDDHYTCMIDLYSRSGRFKEAEEFIKQM 542



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 181/371 (48%), Gaps = 35/371 (9%)

Query: 54  QHQTQILYDKIIS-LSRGNEIEN------LSLQNPQVYLYNFIIQCLSNANPLEAIALYR 106
           + +T ++Y+ +I+ L R   IE+      L +    +     +     N   LEA+ ++R
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 107 EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
            M  +G+  + YT   +L AC    +   G+Q+HAY  +T    NV+V + L+ +Y+ C 
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
            I+    +F         R+++SWT +I  Y +     EA+ +F +M    ++PD   L 
Sbjct: 328 SIRLAEAVF----RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLG 383

Query: 227 IVLSACSKLGDLSLGIKIH---------RYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
            V+S+C+ L  L  G + H         RYIT           + NAL+ +Y KCG+I  
Sbjct: 384 SVISSCANLASLEEGAQFHCLALVSGLMRYIT-----------VSNALVTLYGKCGSIED 432

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           A ++FDEM   + VSW +++ G    G+ KE +D+F +M   GLKPD  T + VL++C+ 
Sbjct: 433 AHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSR 492

Query: 338 IGWLELGKWVHTYLDKNH--INTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-CRDVYSY 394
            G +E G      + K+H  +  D      ++D+Y++ GR  +A    + M    D + +
Sbjct: 493 AGLVEKGCDYFDSMQKDHDIVPIDDHY-TCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGW 551

Query: 395 TAMIVGLAIHG 405
             ++    + G
Sbjct: 552 ATLLSSCRLRG 562



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 151/357 (42%), Gaps = 47/357 (13%)

Query: 41  KQFHAFIIKTGSPQH-----QTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           KQ HA+I +T    +         +Y K  S+     +         +     I+    N
Sbjct: 298 KQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQN 357

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
           A   EA+  + EM + G+ P+ +TL  V+ +C    SL  G Q H  ++ + L+  + V 
Sbjct: 358 ACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS 417

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ LY  CG I+  H+LF       +  D VSWT L+  Y +     E I  F  M  
Sbjct: 418 NALVTLYGKCGSIEDAHRLF----DEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLV 473

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             L+PDG+  + VLSACS+ G +  G                              C   
Sbjct: 474 NGLKPDGVTFIGVLSACSRAGLVEKG------------------------------CDYF 503

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
            S +K  D +P+ +   +  MI   +  G+FKEA +  ++M      PD F    +L+SC
Sbjct: 504 DSMQKDHDIVPIDD--HYTCMIDLYSRSGRFKEAEEFIKQMPH---SPDAFGWATLLSSC 558

Query: 336 ANIGWLELGKW-VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
              G +E+GKW     L+ +  N   ++   L  M+A  G+  +   + R M+ R V
Sbjct: 559 RLRGNMEIGKWAAENLLETDPQNPASYV--LLCSMHAAKGQWTEVAHLRRGMRDRQV 613


>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g28640-like [Vitis vinifera]
          Length = 511

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/486 (39%), Positives = 279/486 (57%), Gaps = 17/486 (3%)

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC--GLIKAVHKLFHFRQHPQAQRDLVS 189
           ++R  + +HA  +   L  N Y  + L+   A+   G +     +F   Q+P    +L +
Sbjct: 16  NMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNP----NLFA 71

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
           + TLI+AY +   P  A+  F  M    N+ PD      ++SAC+    + LG +IH ++
Sbjct: 72  YNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWV 131

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
             N    S D  +  AL+  Y +C  +  ARK+FDE+P  +VV WN ++ G   RG   E
Sbjct: 132 LKNGV-ASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPE 190

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALV 367
           AL+ FR M   G++PD+F L   L  CA +G L+ GKW+H Y+ K   +  D FIG ALV
Sbjct: 191 ALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALV 250

Query: 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS-QVGIEPDE 426
           DMYAKCG ID++  VF  M  R+V+S++AMI G A+HG   KA+     M  + G+ PD 
Sbjct: 251 DMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDG 310

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           V  +GV+ AC+HAGL EEG     +M   Y + P+ EHY CMVDL  RAG + EAL LI+
Sbjct: 311 VVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKLIR 370

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF----EPEGDGAYILMTNIYSSKN 542
            MP+ P A VWGALL  C+ H  V+LAE+    L+        E DGAY+ ++NIY +  
Sbjct: 371 RMPMKPRAAVWGALLSGCRTHNNVDLAELAARELLMVGNGDGTEEDGAYVQLSNIYLAAQ 430

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           + ++A ++R+ + ++++K  PGCSL+EV GE  +F  GD SHP   +I+++LD +   S 
Sbjct: 431 KCEDACRIRRMIGDKRIKTKPGCSLIEVEGEVNQFVSGDISHPCLAQIHEMLDLV---SL 487

Query: 603 NHGYIL 608
            H Y L
Sbjct: 488 QHSYKL 493



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/391 (30%), Positives = 201/391 (51%), Gaps = 29/391 (7%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIIS---LSRGNEIENLSL-----QNPQV 83
           +S  ++ Q K  HA  I  G   H       K+IS   LS    +   SL     QNP +
Sbjct: 12  QSCSNMRQFKAIHALFIVNG--LHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNL 69

Query: 84  YLYNFIIQCLS-NANPLEAIALYREMLI-KGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           + YN +I+  S ++ P  A+  ++ ML  + + P+ +T P+++ AC  S  + +G+Q+H 
Sbjct: 70  FAYNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHN 129

Query: 142 YSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           + +K  +  S+ +V   L+R YA C  +    KLF   + P    D+V W  L+  YV+ 
Sbjct: 130 WVLKNGVASSDRHVQTALVRFYAECCAMGDARKLFD--EIPNL--DVVQWNVLLNGYVRR 185

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               EA+ +F +M  + + PD   L   L  C++LG L  G  IH Y+T   + L  DVF
Sbjct: 186 GLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKW-LEADVF 244

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GL 319
           I  AL+DMY KCG I  + +VF+ M  +NV SW++MI G    G  ++A+    RMQ   
Sbjct: 245 IGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVED 304

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-----NALVDMYAKCG 374
           GL+PD   L+ V+ +CA+ G  E G+++   ++  +    G +      + +VD+  + G
Sbjct: 305 GLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARY----GILPKHEHYSCMVDLLCRAG 360

Query: 375 RIDQAFGVFRSMKCRDVYS-YTAMIVGLAIH 404
           ++D+A  + R M  +   + + A++ G   H
Sbjct: 361 QLDEALKLIRRMPMKPRAAVWGALLSGCRTH 391


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 194/590 (32%), Positives = 330/590 (55%), Gaps = 17/590 (2%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTGSP----QHQTQILYDKIISLSRGNEIENLSL 78
           SL+ QS     +KS+  L+  H  +IK+G       H+    Y K  SL+   ++ +  L
Sbjct: 6   SLIAQSAH---TKSLTTLRAVHTNVIKSGFSYSFLGHKLIDGYIKCGSLAEARKLFD-EL 61

Query: 79  QNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
            +  +  +N +I   +S+    EA+  Y  ML++G+LP+ YT   + KA  Q   +R GQ
Sbjct: 62  PSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQ 121

Query: 138 QVHAYSMKTAL-LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           + H  ++   L + + +V + L+ +YA    ++  H +F        ++D+V +T LI  
Sbjct: 122 RAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFR----RVLEKDVVLFTALIVG 177

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y +     EA+  F DM    ++P+   L  +L  C  LGDL  G  IH  +  +   L 
Sbjct: 178 YAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKS--GLE 235

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
             V    +L+ MY +C  I  + KVF+++   N V+W S + GL   G+ + A+ IFR M
Sbjct: 236 SVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREM 295

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
               + P+ FTL  +L +C+++  LE+G+ +H    K  ++ + + G AL+++Y KCG +
Sbjct: 296 IRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNM 355

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           D+A  VF  +   DV +  +MI   A +G   +AL++F  +  +G+ P+ VTF+ +L AC
Sbjct: 356 DKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLAC 415

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           ++AGLVEEGC+ F  +   +N++   +H+ CM+DL GR+  + EA  LI+ +   PD  +
Sbjct: 416 NNAGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVL 474

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W  LL +CKIH +VE+AE VM  ++   P   G +IL+TN+Y+S  +W + ++++  +++
Sbjct: 475 WRTLLNSCKIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRD 534

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            K+KK+P  S V+V  E + F  GD SHP++LEI+++L  +M + K  GY
Sbjct: 535 LKLKKSPAMSWVDVDREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGY 584


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/573 (34%), Positives = 300/573 (52%), Gaps = 40/573 (6%)

Query: 41  KQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS- 94
           KQ HA  IKT    +   +     +Y K   +     +  L+       L+  ++   S 
Sbjct: 158 KQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQ 217

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N +  +AI  +R+M  +G+  N +T P +L AC    +   G QVH   +++   +NV+V
Sbjct: 218 NGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFV 277

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +Y+ CG +    ++    +      D VSW ++I   V+     EA+  F  M 
Sbjct: 278 GSALVDMYSKCGDLSNARRMLETME----VDDPVSWNSMIVGCVRQGLGEEALSLFRIMH 333

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
             +++ D      VL+  S + D+   + +H  I    F       ++NAL+DMY K G 
Sbjct: 334 LRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYK--LVNNALVDMYAKRGY 391

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
              A  VF++M  K+V+SW S++ G  H G ++EAL +F  M+ +G+ PD   +  VL++
Sbjct: 392 FDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSA 451

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA +  LE GK VH    K+ + +   + N+LV MYAKCG I+ A  VF SM+ +DV ++
Sbjct: 452 CAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITW 511

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           TA+IVG A +G+                               HAGLVE G  +F  M  
Sbjct: 512 TALIVGYAQNGRGR----------------------------DHAGLVEHGRSYFQSMEE 543

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
           VY ++P  EHY CM+DL GR+G + EA +L+  M + PDA VW ALL AC++H  VEL E
Sbjct: 544 VYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGE 603

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
               NL   EP+    Y+L++N+YS+  +W+EA K R+ MK R V K PGCS +E+  + 
Sbjct: 604 RAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKV 663

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + F   D+SHP+T EIY  +DEIM   K  GY+
Sbjct: 664 HRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYV 696



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 151/469 (32%), Positives = 234/469 (49%), Gaps = 24/469 (5%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           +EA+ L+ EM  +G  PN +T   VL+ C     L  G+Q+HA+++KT   SN +V   L
Sbjct: 120 VEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGL 179

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +YA C  I     LF        +R+ V WT ++  Y +     +AI  F DM    +
Sbjct: 180 VDMYAKCKCILEAEYLFEL---APDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGI 236

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
             +      +L+AC  +     G ++H  I  + F    +VF+ +AL+DMY KCG++ +A
Sbjct: 237 ECNQFTFPSILTACGSISACGFGAQVHGCIVRSGF--GANVFVGSALVDMYSKCGDLSNA 294

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
           R++ + M V + VSWNSMI G   +G  +EAL +FR M    +K D+FT   VLN  + +
Sbjct: 295 RRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFV 354

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             +     VH+ + K        + NALVDMYAK G  D AF VF  M  +DV S+T+++
Sbjct: 355 MDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLV 414

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK---HFLDMSRV 455
            G   +G   +AL +F EM  +GI PD++    VLSAC+   ++E G +   +FL     
Sbjct: 415 TGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLG 474

Query: 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL------GACKIHAK 509
            +L         +V ++ + G I +A  +  SM  + D   W AL+      G  + HA 
Sbjct: 475 SSLSVDNS----LVSMYAKCGCIEDANKVFDSME-IQDVITWTALIVGYAQNGRGRDHAG 529

Query: 510 -VELAEIV---MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
            VE        ME +   +P G   Y  M ++     +  EA +L  +M
Sbjct: 530 LVEHGRSYFQSMEEVYGIKP-GPEHYACMIDLLGRSGKLMEAKELLNQM 577



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 176/369 (47%), Gaps = 27/369 (7%)

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
           +NT++  YA  G +    KLF+        R  ++W++LI  Y +     EA+  F++M 
Sbjct: 75  WNTMIGAYANSGRLNEARKLFY----ETPIRSCITWSSLISGYCRYGCDVEALELFWEMQ 130

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
               RP+      VL  CS    L  G +IH +     F+   + F+   L+DMY KC  
Sbjct: 131 YEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFD--SNAFVVTGLVDMYAKCKC 188

Query: 275 IPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
           I  A  +F+  P K N V W +M+ G +  G   +A++ FR M+G G++ + FT   +L 
Sbjct: 189 ILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILT 248

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +C +I     G  VH  + ++    + F+G+ALVDMY+KCG +  A  +  +M+  D  S
Sbjct: 249 ACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVS 308

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           + +MIVG    G   +AL +F  M    ++ DE T+  VL+  S            +DM 
Sbjct: 309 WNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFV----------MDMR 358

Query: 454 R---VYNLQPQT--EHY----GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
               V++L  +T  E Y      +VD++ + G    A D+ + M    D   W +L+  C
Sbjct: 359 NAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMT-DKDVISWTSLVTGC 417

Query: 505 KIHAKVELA 513
             +   E A
Sbjct: 418 VHNGSYEEA 426



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 138/278 (49%), Gaps = 9/278 (3%)

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VLS  SK G +    K+   + D       D    N +I  Y   G +  ARK+F E P+
Sbjct: 47  VLSNLSKCGRVDDARKLFDVMPDR------DECSWNTMIGAYANSGRLNEARKLFYETPI 100

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           ++ ++W+S+I+G    G   EAL++F  MQ  G +P+ FT   VL  C+    LE GK +
Sbjct: 101 RSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQI 160

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR-SMKCRDVYSYTAMIVGLAIHGK 406
           H +  K   +++ F+   LVDMYAKC  I +A  +F  +   R+   +TAM+ G + +G 
Sbjct: 161 HAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGD 220

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
             KA++ F +M   GIE ++ TF  +L+AC        G +    + R            
Sbjct: 221 GHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRS-GFGANVFVGS 279

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
            +VD++ + G +  A  ++++M  V D   W +++  C
Sbjct: 280 ALVDMYSKCGDLSNARRMLETME-VDDPVSWNSMIVGC 316



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 40/193 (20%)

Query: 348 HTYLD---KNHINTDGFI-----GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
           HT L+   +  +N+ G +      N ++   +KCGR+D A  +F  M  RD  S+  MI 
Sbjct: 21  HTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIG 80

Query: 400 GLAIHGK-----------------AW--------------KALDIFSEMSQVGIEPDEVT 428
             A  G+                  W              +AL++F EM   G  P++ T
Sbjct: 81  AYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFT 140

Query: 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
           +  VL  CS   L+E+G K     +              +VD++ +   I EA  L +  
Sbjct: 141 WGSVLRVCSMYVLLEKG-KQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELA 199

Query: 489 PLVPDAFVWGALL 501
           P   +  +W A++
Sbjct: 200 PDKRNHVLWTAMV 212


>gi|413925046|gb|AFW64978.1| hypothetical protein ZEAMMB73_457124 [Zea mays]
          Length = 592

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 170/397 (42%), Positives = 252/397 (63%), Gaps = 8/397 (2%)

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
           PQ   D VSW T+I  Y++   P +A+ +F  M +  +R D + L+  L A +K G   +
Sbjct: 19  PQGACDTVSWNTIISGYLRCGMPNKALQAFGQMVKEPVRLDDVTLLNALVASAKAGKAKV 78

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G   H  +  N   +  + ++ ++LI MY KCG +  ARKVF  M  +NVV W SMI+G 
Sbjct: 79  GRLCHSLVVVNGAGI--NCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGY 136

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
           T  G+FK+A+D+FR MQ  G+K DD T+  V++SCA +G L+LG++VH Y D + +  + 
Sbjct: 137 TQLGKFKKAVDLFRDMQITGMKADDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKEL 196

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            + N+L+DMY+KCG I +A  +F  +  RDV+S+TAMI+G  ++G   +ALD+F++M   
Sbjct: 197 SVKNSLIDMYSKCGDITKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQMEGE 256

Query: 421 G-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
           G + P+EVTF+GVL++CSH GLVE+G  HF  MS VYNL P+ EHYGCMVDL GRA L+ 
Sbjct: 257 GKVMPNEVTFLGVLTSCSHGGLVEQGFHHFQRMSMVYNLAPRIEHYGCMVDLLGRAKLLT 316

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA   I  MP+ PD  VW +LL AC+   +V LAE V E ++  EP+    ++L++N+Y+
Sbjct: 317 EAEQFINGMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPKKCAGHVLLSNVYA 376

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
           + +RW +  KLR  M   ++ +     + +V  EF E
Sbjct: 377 ATSRWVDVNKLRTSMDSCRMSQ-----IAQVVVEFLE 408



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 142/248 (57%), Gaps = 7/248 (2%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P +A+  + +M+ + +  +  TL   L A  ++   +VG+  H+  +      N Y+ ++
Sbjct: 41  PNKALQAFGQMVKEPVRLDDVTLLNALVASAKAGKAKVGRLCHSLVVVNGAGINCYMGSS 100

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +YA CGL++   K+FH       +R++V WT++I  Y ++    +A+  F DM    
Sbjct: 101 LISMYAKCGLVEDARKVFHGMH----ERNVVCWTSMISGYTQLGKFKKAVDLFRDMQITG 156

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++ D   +  V+S+C+++G L LG  +H Y  D H  L  ++ + N+LIDMY KCG+I  
Sbjct: 157 MKADDGTIATVVSSCAQMGALDLGRYVHAY-CDVH-GLGKELSVKNSLIDMYSKCGDITK 214

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCA 336
           A ++F  +  ++V SW +MI G T  G   EALD+F +M+G G + P++ T + VL SC+
Sbjct: 215 AHEIFCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQMEGEGKVMPNEVTFLGVLTSCS 274

Query: 337 NIGWLELG 344
           + G +E G
Sbjct: 275 HGGLVEQG 282



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 146/309 (47%), Gaps = 15/309 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ L+R+M I G+  +  T+  V+ +C Q  +L +G+ VHAY     L   + V N+L+
Sbjct: 144 KAVDLFRDMQITGMKADDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLI 203

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANL 218
            +Y+ CG I   H++F        +RD+ SWT +I  +       EA+  F  M  +  +
Sbjct: 204 DMYSKCGDITKAHEIF----CGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQMEGEGKV 259

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            P+ +  + VL++CS  G +  G   H       +NL+P +  +  ++D+  +   +  A
Sbjct: 260 MPNEVTFLGVLTSCSHGGLVEQGFH-HFQRMSMVYNLAPRIEHYGCMVDLLGRAKLLTEA 318

Query: 279 RKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS--C 335
            +  + MP+  +VV W S++      G+   A  +  R+  L L+P       +L++   
Sbjct: 319 EQFINGMPIAPDVVVWRSLLFACRACGEVGLAEFVAERI--LELEPKKCAGHVLLSNVYA 376

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A   W+++ K + T +D   ++    +    +++   C    + F   R+ + R    Y 
Sbjct: 377 ATSRWVDVNK-LRTSMDSCRMSQIAQVVVEFLEVAISCIVFLKGFYPPRAFERR---RYM 432

Query: 396 AMIVGLAIH 404
            ++V  A+H
Sbjct: 433 NVVVQKALH 441


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 182/493 (36%), Positives = 281/493 (56%), Gaps = 9/493 (1%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           N Y    +L++C  +++L  G+Q+HA   +  +  N+ +   L+  Y+VC  ++  H LF
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF-DMCQANLRPDGMILVIVLSACSK 234
              + P+   +L  W  LI+AY   + P E  +S +  M +  L+PD   L  VL ACS 
Sbjct: 117 D--KIPKG--NLFLWNVLIRAYA-WNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSA 171

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           L  +  G  IH  +  + +    DVF+  AL+DMY KCG +  AR VFD++  ++ V WN
Sbjct: 172 LSTIGEGRVIHERVIRSGWE--RDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWN 229

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           SM+A     G   E+L +   M   G++P + TLV V++S A+I  L  G+ +H +  ++
Sbjct: 230 SMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRH 289

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
               +  +  AL+DMYAKCG +  A  +F  ++ + V S+ A+I G A+HG A +ALD+F
Sbjct: 290 GFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLF 349

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
             M +   +PD +TFVG L+ACS   L++EG   +  M R   + P  EHY CMVDL G 
Sbjct: 350 ERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGH 408

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
            G + EA DLI+ M ++PD+ VWGALL +CK H  VELAE+ +E L+  EP+  G Y+++
Sbjct: 409 CGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVIL 468

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
            N+Y+   +W+   +LR+ M ++ +KK   CS +EV  + Y F  GD SHP +  IY  L
Sbjct: 469 ANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAEL 528

Query: 595 DEIMHQSKNHGYI 607
             +    +  GY+
Sbjct: 529 KRLEGLMREAGYV 541



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 203/403 (50%), Gaps = 20/403 (4%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL-SRGNEIENL-----SLQNPQVYLY 86
           S+K++   KQ HA + + G   +    L  K+++  S  N + N       +    ++L+
Sbjct: 70  SAKALEPGKQLHARLCQLGIAYNLD--LATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLW 127

Query: 87  NFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
           N +I+  +   P E AI+LY +ML  GL P+ +TLP+VLKAC    ++  G+ +H   ++
Sbjct: 128 NVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIR 187

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
           +    +V+V   L+ +YA CG +     +F         RD V W +++ AY +  +P E
Sbjct: 188 SGWERDVFVGAALVDMYAKCGCVVDARHVF----DKIVDRDAVLWNSMLAAYAQNGHPDE 243

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           ++    +M    +RP    LV V+S+ + +  L  G +IH +   + F  +  V    AL
Sbjct: 244 SLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKV--KTAL 301

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           IDMY KCG++  A  +F+ +  K VVSWN++I G    G   EALD+F RM     +PD 
Sbjct: 302 IDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDH 360

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
            T V  L +C+    L+ G+ ++  + ++  IN        +VD+   CG++D+A+ + R
Sbjct: 361 ITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIR 420

Query: 385 SMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
            M    D   + A++     HG    A     ++  + +EPD+
Sbjct: 421 QMDVMPDSGVWGALLNSCKTHGNVELAEVALEKL--IELEPDD 461


>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
          Length = 620

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 177/471 (37%), Positives = 279/471 (59%), Gaps = 8/471 (1%)

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV 198
            HA   K  L S+ +  ++L+ +Y+      A  K+F+        RD+VSW  +++AY 
Sbjct: 150 AHALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNG----IPSRDVVSWNAMMKAYG 205

Query: 199 KMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           ++    E      DM +   + P+ + L +VL+AC   GDL LG  +  +       +  
Sbjct: 206 RVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEW--SKSAGMET 263

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           D  + +AL+ MY KCG I  AR+VFD +  K+VV+WN+MI G    G   EA+ +F  M+
Sbjct: 264 DSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMK 323

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             G+ PD  TL  VL++C+ +G LELG  +  Y     +  + ++G ALVDMYAKCG +D
Sbjct: 324 KAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLD 383

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSAC 436
           +A  VFR M+C++V S+ A+I GLA +G+  +A+  F  M ++ G++PD++TF+GVLSAC
Sbjct: 384 KAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSAC 443

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
            HAGLV++G + F  ++  + + P+ EHY CMVDL  R+G + E  D I+ +P   DA +
Sbjct: 444 VHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCMVDLLARSGHLEEVWDFIEKIPDKVDAVM 503

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
            GALL AC+    VE+ E V+  +++ EP     Y++ + IY+S  R  ++ K+R  M+E
Sbjct: 504 LGALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGPMRE 563

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R V KTPGCS VE+ G+  EF  GD+      ++Y++LD ++ + +  GY+
Sbjct: 564 RGVNKTPGCSWVEISGKVLEFYAGDEPQHGADDMYQVLDLLVDEMRLEGYV 614



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 153/280 (54%), Gaps = 9/280 (3%)

Query: 104 LYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLY 162
           + R+M+  G ++PN  TL  VL AC     L +G+ V  +S    + ++  V + L+ +Y
Sbjct: 216 MLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMY 275

Query: 163 AVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
             CG I    ++F         +D+V+W  +I  Y +     EAI  F +M +A + PD 
Sbjct: 276 EKCGEIAEARRVF----DSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDK 331

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
           + L  VLSACS +G L LG ++  Y +     L  +V++  AL+DMY KCG++  A +VF
Sbjct: 332 ITLAGVLSACSAVGALELGSELDGYASCR--GLYNNVYVGTALVDMYAKCGDLDKAIEVF 389

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWL 341
            +M  KNV SWN++I GL   GQ  EA+  F  M+   GLKPDD T + VL++C + G +
Sbjct: 390 RKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLV 449

Query: 342 ELGK-WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           + GK W ++   +  I       + +VD+ A+ G +++ +
Sbjct: 450 KDGKRWFNSLTSEFQIIPKIEHYSCMVDLLARSGHLEEVW 489



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 10/232 (4%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTY 118
           +Y+K   ++    + + S+ +  V  +N +I   + N    EAI+L+  M   G+ P+  
Sbjct: 274 MYEKCGEIAEARRVFD-SIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKI 332

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG-LIKAVHKLFHF 177
           TL  VL AC    +L +G ++  Y+    L +NVYV   L+ +YA CG L KA+      
Sbjct: 333 TLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKM 392

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLG 236
           R      +++ SW  LI          EAI  F  M  +  L+PD +  + VLSAC   G
Sbjct: 393 R-----CKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAG 447

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
            +  G +    +T + F + P +  ++ ++D+  + G++       +++P K
Sbjct: 448 LVKDGKRWFNSLT-SEFQIIPKIEHYSCMVDLLARSGHLEEVWDFIEKIPDK 498


>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/464 (39%), Positives = 269/464 (57%), Gaps = 35/464 (7%)

Query: 178 RQHPQAQRD-LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK-- 234
           R H  +  D +VSWT+ I  + +     EA   F  M  A +RP+ +  + +LSAC+   
Sbjct: 44  RSHTHSPIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFP 103

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           L  L  G  IH Y+     + + +V +  AL+DMY KCG +  A  +FDEM V+N VSWN
Sbjct: 104 LEGLRFGGSIHAYVRKLGLD-TENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWN 162

Query: 295 -------------------------------SMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
                                          SMI G   +G F++AL+ FR MQ  G++P
Sbjct: 163 TMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEP 222

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D  T++ VL +CAN+G L LG W++ ++ K     +  I N+L+DMY++CG I  A  VF
Sbjct: 223 DYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVF 282

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
             M  R + S+ +MIVG A++G A +AL+ F+ M + G  PD V+F G L+ACSH+GLV+
Sbjct: 283 EQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVD 342

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG + F  M R   + P+ EHYGC+VDL+ RAG + +AL++I +MP+ P+  V G+LL A
Sbjct: 343 EGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAA 402

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           C+ H  V LAE +M+ L   +P  D  Y+L++NIY++  RW  A K+RKKMK   + K P
Sbjct: 403 CRTHGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKP 462

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           G S +E+ G  +EF  GDK+H +T  IY +LD +  + +  GY+
Sbjct: 463 GFSSIEMDGSIHEFVAGDKTHVETQNIYAMLDHLFLELRICGYV 506



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 138/518 (26%), Positives = 227/518 (43%), Gaps = 90/518 (17%)

Query: 80  NPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKAC--WQSQSLRVGQ 137
           +P V   + I     N    EA A +  M I G+ PN  T   +L AC  +  + LR G 
Sbjct: 52  DPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGG 111

Query: 138 QVHAYSMKTAL-LSNVYVFNTLMRLYAVCGLIKAVHKLF---HFRQH------------- 180
            +HAY  K  L   NV V   L+ +Y+ CG +     +F   H R               
Sbjct: 112 SIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRN 171

Query: 181 -----------PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
                        ++RD +SWT++I  +VK     +A+  F +M  A + PD + ++ VL
Sbjct: 172 GEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVL 231

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           +AC+ LG L LG+ I+R++    F    ++ I N+LIDMY +CG I  AR+VF++MP ++
Sbjct: 232 AACANLGALGLGLWINRFVMKQDFK--DNIKISNSLIDMYSRCGCIRLARQVFEQMPKRS 289

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           +VSWNSMI G    G  +EAL+ F  M+  G +PD  +    L +C++ G ++ G     
Sbjct: 290 LVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFD 349

Query: 350 YLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
            + +   I+        LVD+Y++ GR++ A  V  +M                      
Sbjct: 350 IMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMP--------------------- 388

Query: 409 KALDIFSEMSQVGIEPDEVTFVGVLSAC---SHAGLVEEGCKHFLDMSRVYNLQPQTE-H 464
                        ++P+EV    +L+AC      GL E   K+  +      + P ++ +
Sbjct: 389 -------------MKPNEVVLGSLLAACRTHGDVGLAERLMKYLCE------VDPGSDSN 429

Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
           Y  + +++   G    A  + K M              A  IH K   + I M+  +   
Sbjct: 430 YVLLSNIYAAVGRWDGASKVRKKMK-------------ALGIHKKPGFSSIEMDGSIHEF 476

Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562
             GD  ++   NIY+  +     L++   + E +V K+
Sbjct: 477 VAGDKTHVETQNIYAMLDHLFLELRICGYVPEIEVGKS 514


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 177/496 (35%), Positives = 287/496 (57%), Gaps = 18/496 (3%)

Query: 116 NTYTLPYVLKAC---WQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           +  +L  ++ AC     S  LR G  VH   +K     + ++ N+++ +Y+ C  +    
Sbjct: 161 DVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAW 220

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ---ANLRPDGMILVIVL 229
           ++F+    P  QRD+VSW +LI  +        A+ +F DM     + + P+ + ++ +L
Sbjct: 221 RVFN--GIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALL 278

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNL--SPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
            +C++LG +     +H YI+  H +L  + DV +  AL+DM+ +CGN+  AR++FD +  
Sbjct: 279 KSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEG 338

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRM------QGLGLKPDDFTLVCVLNSCANIGWL 341
           KNVV W++MIAG       +EAL +FR+M       G+ +KP+  TLV V+ +C+ +G  
Sbjct: 339 KNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGAS 398

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--KCRDVYSYTAMIV 399
                +H Y     ++ D  I +AL+DM AKCG I+    VF  M    R V S+++MI 
Sbjct: 399 RSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIG 458

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
              IHG+  +AL++FSEM   G EP+E+T++ VLSACSHAGLVE+G   F  M + Y + 
Sbjct: 459 AEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMS 518

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  +HY C+VDL GRAG + EA ++I +MP+  D  +WG+LL AC +H   +L EIV + 
Sbjct: 519 PTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKK 578

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           ++  +    G ++L+ N+Y    RW + +++R +++   ++K PG S +E+  E Y F  
Sbjct: 579 ILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMA 638

Query: 580 GDKSHPKTLEIYKLLD 595
            D+SHP++  IYK LD
Sbjct: 639 EDRSHPESEMIYKELD 654



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 211/460 (45%), Gaps = 33/460 (7%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           S+ +   + +N +I   +  NP  A+  +  M    +  N +T P +LKAC   + L   
Sbjct: 12  SISHKDTFHWNSLIAKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            QVHAY  +  L ++ +    L+  Y  CG   A +    F + P+   D+VSWT LI A
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCG--HAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 197 YVKMDYPTEAILSFFDM-----------CQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           Y       EA  +F  M           C  ++   G ++      C     L  G  +H
Sbjct: 130 YSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGS-NCLRRGSAVH 188

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--KNVVSWNSMIAGLTHR 303
             +    F +S    + N+++ MY  C ++  A +VF+ +P+  ++VVSWNS+I+G    
Sbjct: 189 GLVVKYGFGVS--THLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLN 246

Query: 304 GQFKEALDIFRRMQGLG---LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH----I 356
           G+ + AL  F  M   G   ++P+  T++ +L SCA +G +E   WVH Y+   H    +
Sbjct: 247 GEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLV 306

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
             D  +  AL+DM+A+CG +  A  +F  ++ ++V  ++AMI G        +AL +F +
Sbjct: 307 AKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQ 366

Query: 417 M----SQVGIE--PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           M    + VG+E  P+ VT V V++ACS  G            +    L         ++D
Sbjct: 367 MLMEGNMVGVEVKPNAVTLVSVIAACSRLG-ASRSASMIHKYAVATGLDQDARIASALID 425

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFV-WGALLGACKIHAK 509
           +  + G I     +   M       V W +++GA  IH +
Sbjct: 426 MCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGE 465



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 106/246 (43%), Gaps = 13/246 (5%)

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K+   WNS+IA    +   + AL  F RMQ   +  ++FT   +L +CA +  L     V
Sbjct: 16  KDTFHWNSLIAKNATQNP-QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM--KCRDVYSYTAMIVGLAIHG 405
           H YL +  +  D F   ALVD Y KCG    A  VF  M     DV S+TA+I   + +G
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 406 KAWKALDIFSEMSQV-GIEPDEVTFVGVLSACSHAGLVEEGCKH--FLDMSRVYNLQPQ- 461
              +A   F  M  + G +  E   V V+S  +       GC        S V+ L  + 
Sbjct: 135 CVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKY 194

Query: 462 ----TEHYG-CMVDLFGRAGLIREALDLIKSMPLVP-DAFVWGALLGACKIHAKVELAEI 515
               + H G  MV ++     +  A  +   +P+   D   W +L+    ++ + E A  
Sbjct: 195 GFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALR 254

Query: 516 VMENLV 521
             E++V
Sbjct: 255 TFEDMV 260


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/391 (43%), Positives = 244/391 (62%), Gaps = 5/391 (1%)

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD      ++ AC++L  L  G  +H     N F     VF+ N+L+ +Y  CG   SA 
Sbjct: 114 PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTL--VFVQNSLVHLYGACGLFESAH 171

Query: 280 KVFDEMPVK--NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           KVFDEMPV+  N+VSWNSM+      G+  E L +F  M G+   PD FT+V VL +CA 
Sbjct: 172 KVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAE 231

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-RDVYSYTA 396
            G L LG+ VH Y++K  +  +  + NAL+D+YAKCG ++ A  +F  M   R V S+T+
Sbjct: 232 FGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTS 291

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +IVGLA +G   +AL++FS M +  + P E+T VGVL ACSH GLV++G ++F  M   Y
Sbjct: 292 LIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDY 351

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            + P+ EH GCMVDL GRAG + EA D I +MPL P+A VW  LLG+C +H K+EL ++ 
Sbjct: 352 GISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVA 411

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            E LV  +P   G Y+L++N+Y++   W +   LRK M + +V+K PG SLVE+    YE
Sbjct: 412 WERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYE 471

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           F  GD+SHP++ +IY++L EI  + +  GYI
Sbjct: 472 FVMGDRSHPESEQIYEMLAEIAERLRREGYI 502



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/404 (30%), Positives = 210/404 (51%), Gaps = 37/404 (9%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNE------IENLSLQNPQVYLY 86
           ++ S+   KQ HA  ++ G P     +    +  L+          +  LS   P   L 
Sbjct: 24  AAPSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLD 83

Query: 87  NFIIQCL-----SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
            F +  +      +  P  A+ L+R  L    LP+T+T P +++AC +  +LR G+ +HA
Sbjct: 84  PFPLNTVLRIAAGSPRPRVALELHRRRLA---LPDTHTYPPLIQACARLLALREGECLHA 140

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
            + K   ++ V+V N+L+ LY  CGL ++ HK+F   + P   R+LVSW +++ ++    
Sbjct: 141 EAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFD--EMPVRGRNLVSWNSMLNSFAANG 198

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
            P E +  F++M   +  PDG  +V VL+AC++ G L+LG ++H Y+      L  +  +
Sbjct: 199 RPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYV--EKVGLVENSHV 256

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
            NALID+Y KCG++  AR++F+EM + + VVSW S+I GL   G  KEAL++F  M+   
Sbjct: 257 SNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREK 316

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG------NALVDMYAKCG 374
           L P + T+V VL +C++ G ++ G     Y D+  +  D  I         +VD+  + G
Sbjct: 317 LVPTEITMVGVLYACSHCGLVDDG---FRYFDR--MKEDYGISPRIEHLGCMVDLLGRAG 371

Query: 375 RIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGK------AWKAL 411
           R+++A+    +M    +   +  ++   A+H K      AW+ L
Sbjct: 372 RVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERL 415


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/577 (32%), Positives = 311/577 (53%), Gaps = 30/577 (5%)

Query: 44   HAFIIKTG------------SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQ 91
            H +I+K G            S   ++ ++ D ++  +R    + +S        +N +I 
Sbjct: 440  HGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTIS--------WNSVIS 491

Query: 92   -CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
             C SN    EAI L+  M  +G   ++ TL  VL AC QS+    G+ VH YS+KT L+ 
Sbjct: 492  GCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIG 551

Query: 151  NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
               + N L+ +Y+ C   ++ +++F        Q+++VSWT +I +Y++     +     
Sbjct: 552  ETSLANALLDMYSNCSDWQSTNQIFR----SMGQKNVVSWTAMITSYMRAGLFDKVAGLL 607

Query: 211  FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN-LSPDVFIHNALIDMY 269
             +M    +RPD   +   L A +    L  G  +H Y   N    L P   + NAL++MY
Sbjct: 608  QEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLP---VANALMEMY 664

Query: 270  LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            +KC N+  AR +FD +  K+V+SWN++I G +      E+  +F  M  L  +P+  T+ 
Sbjct: 665  VKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDML-LQFRPNAVTMT 723

Query: 330  CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            C+L + A+I  LE G+ +H Y  +     D +  NALVDMY KCG +  A  +F  +  +
Sbjct: 724  CILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKK 783

Query: 390  DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
            ++ S+T MI G  +HG    A+ +F +M   GIEPD  +F  +L AC H+GL  EG + F
Sbjct: 784  NLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFF 843

Query: 450  LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
              M + Y ++P+ +HY C+VDL  R G ++EAL+ I+SMP+ PD+ +W +LL  C+IH  
Sbjct: 844  KAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKN 903

Query: 510  VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
            V+LAE V + + + EPE  G Y+L+ NIY+   RW+   KL+ K+  R +++  G S +E
Sbjct: 904  VKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIE 963

Query: 570  VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            V  + + F   +++HP    I + LD++  + +  G+
Sbjct: 964  VRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQEGH 1000



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 210/466 (45%), Gaps = 47/466 (10%)

Query: 74  ENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQS 132
           + +  Q   V ++  ++   + A    EA++L+R+M   G+ P+ + +  VLK      S
Sbjct: 160 DGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGS 219

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           L  G+ +H    K  L     V N L+ +Y+ CG ++   ++F    HP   RD +SW +
Sbjct: 220 LTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFD-SMHP---RDAISWNS 275

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT--- 249
           +I       +   A+  F  M         + ++ VL AC+ LG   +G  +H Y     
Sbjct: 276 MIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSG 335

Query: 250 -----DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHR 303
                D+  +   D  + + L+ MY+KCG++ SAR+VFD M  K NV  WN ++ G    
Sbjct: 336 LLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKV 395

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
           G+F+E+L +F +M  LG+ PD+  + C+L     +     G   H Y+ K        + 
Sbjct: 396 GEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVC 455

Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423
           NAL+  YAK   I  A  VF  M  +D  S+ ++I G + +G   +A+++F  M   G E
Sbjct: 456 NALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQE 515

Query: 424 PDEVTFVGVLSACSHA----------------GLVEE------------GCKHFLDMSRV 455
            D VT + VL AC+ +                GL+ E             C  +   +++
Sbjct: 516 LDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQI 575

Query: 456 YNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMPL---VPDAFV 496
           +    Q     +  M+  + RAGL  +   L++ M L    PD F 
Sbjct: 576 FRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFA 621



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 197/425 (46%), Gaps = 34/425 (8%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSN----VYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           V++ C + +SL   ++ HA    ++  +       +   L+  Y  CG +     +F   
Sbjct: 103 VVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFD-G 161

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
             PQA  D+  WT+L+ AY K     EA+  F  M    + PD   +  VL   S LG L
Sbjct: 162 MPPQAA-DVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSL 220

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
           + G  IH  +      L     + NALI +Y +CG +  A +VFD M  ++ +SWNSMI 
Sbjct: 221 TEGEVIHGLL--EKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIG 278

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI-- 356
           G    G    A+D+F +M   G +    T++ VL +CA +G+  +GK VH Y  K+ +  
Sbjct: 279 GCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLW 338

Query: 357 --------NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKA 407
                     D  +G+ LV MY KCG +  A  VF +M  + +V+ +  ++ G A  G+ 
Sbjct: 339 GLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEF 398

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLS-----ACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
            ++L +F +M ++GI PDE     +L      +C+  GLV  G  + + +        Q 
Sbjct: 399 EESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG--YIVKL----GFGAQC 452

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
                ++  + ++ +I +A+ +   MP   D   W +++  C  +    L    +E  +R
Sbjct: 453 AVCNALISFYAKSNMIGDAVLVFNRMPR-QDTISWNSVISGCSSNG---LNSEAIELFIR 508

Query: 523 FEPEG 527
              +G
Sbjct: 509 MWTQG 513



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 200/453 (44%), Gaps = 32/453 (7%)

Query: 9   SGSRYNDINTFQQLSLLHQSPR-------LESSKSVGQLKQ---FHAFIIKTGSPQHQTQ 58
           +G     ++ F+Q+     SP        L+   S+G L +    H  + K G  Q    
Sbjct: 182 AGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQ-ACA 240

Query: 59  ILYDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKG 112
           +    I   SR   +E+      S+       +N +I  C SN     A+ L+ +M  +G
Sbjct: 241 VANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQG 300

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL----------SNVYVFNTLMRLY 162
              ++ T+  VL AC       +G+ VH YS+K+ LL           +  + + L+ +Y
Sbjct: 301 TEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMY 360

Query: 163 AVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
             CG + +  ++F       ++ ++  W  ++  Y K+    E++  F  M +  + PD 
Sbjct: 361 VKCGDMASARRVF---DAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDE 417

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
             +  +L   + L     G+  H YI    F       + NALI  Y K   I  A  VF
Sbjct: 418 HAISCLLKCITCLSCARDGLVAHGYIVKLGFG--AQCAVCNALISFYAKSNMIGDAVLVF 475

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
           + MP ++ +SWNS+I+G +  G   EA+++F RM   G + D  TL+ VL +CA   +  
Sbjct: 476 NRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWF 535

Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
            G+ VH Y  K  +  +  + NAL+DMY+ C        +FRSM  ++V S+TAMI    
Sbjct: 536 AGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYM 595

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
             G   K   +  EM   GI PD       L A
Sbjct: 596 RAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHA 628


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/561 (35%), Positives = 306/561 (54%), Gaps = 15/561 (2%)

Query: 41  KQFHAFIIK----TGSPQHQTQIL-YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           K  H  II+    T  P +   +L Y +    S    I + ++ N  +  +  +I C + 
Sbjct: 220 KSVHGCIIRQRIETRGPLNDALVLMYSRCDDFSSAERIFS-NMFNRSIASWTAMISCYNR 278

Query: 96  ANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           +    +A+ ++ EML   + PN  T+  VL +C     LR G+ VH Y++K   L +  +
Sbjct: 279 SRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSL 338

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
              L+  YA  G +    K+ H       +R+++SW  LI  Y       EA+  F  M 
Sbjct: 339 GPALIEYYAQFGKLSYCEKVLH----TIGKRNIISWNMLISVYASQGLFKEALGIFVQMQ 394

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +    PD   L   +SAC+ +G L LG +IH Y    H     D F+ N+LIDMY KCG+
Sbjct: 395 RQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIKRHI---LDEFVQNSLIDMYSKCGH 451

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A  +FD +  K+VV+WNSMI G +  G   EA+ +F +M    L  ++ T +  + +
Sbjct: 452 VDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQA 511

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           C+++G LE GKW+H  L    +  D FI  AL+DMYAKCG +  A  VF SM  R V S+
Sbjct: 512 CSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSW 571

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           +AMI G  +HG    A+ +F+EM Q  ++P+++TF+ +LSACSH+G VEEG K + +  +
Sbjct: 572 SAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEG-KFYFNSMK 630

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            + ++P  EH+ CMVDL  RAG + EA  +I SMP   +A +WGALL  C+IH ++++  
Sbjct: 631 NFEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCRIHQRMDMIR 690

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
            +  +L+    +  G Y L++NIY+ +  W  + K+R  MK   +KK PG S +E+  + 
Sbjct: 691 NIERDLLDMRTDDTGYYTLLSNIYAEEGNWDVSRKVRSAMKGIGLKKVPGYSTIELDKKV 750

Query: 575 YEFRKGDKSHPKTLEIYKLLD 595
           Y F  GD SH +  EI   L+
Sbjct: 751 YRFGAGDVSHWQVKEINTFLE 771



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 214/423 (50%), Gaps = 13/423 (3%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTG---SPQHQTQIL--YDKIISLSRGNEIENLSLQNPQV 83
           P   S  S+  L   H+ ++ TG    PQ  T+++  Y +I  L + +++   + QNP  
Sbjct: 6   PLFRSCTSLRPLTLLHSHLLVTGLHHDPQASTKLIESYSQIGCL-QSSKLVFETFQNPDS 64

Query: 84  YLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           +++  +I+C   +N   EAI+LY +M+ K +  + +    VL+AC    +L VG++VH  
Sbjct: 65  FMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGR 124

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +K  L  +  V  +L+ +Y   G +    K+F         RDLVSW+++I  YV    
Sbjct: 125 IIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVF----DNMTTRDLVSWSSIISCYVDNGE 180

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
            +E +  F  +   ++  D + ++ +  AC +LG L L   +H  I            ++
Sbjct: 181 SSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGP--LN 238

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           +AL+ MY +C +  SA ++F  M  +++ SW +MI+       FK+AL +F  M    + 
Sbjct: 239 DALVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVA 298

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           P+  T++ VL+SCA    L  GK VH Y  K+    D  +G AL++ YA+ G++     V
Sbjct: 299 PNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKV 358

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
             ++  R++ S+  +I   A  G   +AL IF +M + G  PD  +    +SAC++ GL+
Sbjct: 359 LHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLL 418

Query: 443 EEG 445
             G
Sbjct: 419 WLG 421


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 163/419 (38%), Positives = 254/419 (60%), Gaps = 4/419 (0%)

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W  +I+ +++   PT A   +  M   + + D +    VL AC+++      I+IH +I 
Sbjct: 73  WNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIV 132

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
              F    D  +   L+D+Y K G I SA KVFDEM  +++ SWN++I+G     +  EA
Sbjct: 133 RKGF--IADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEA 190

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           L +F+RM+  G KP++ +++  L++CA +G  + G+ +H Y+     + +  + N ++DM
Sbjct: 191 LSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDM 250

Query: 370 YAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428
           YAKCG +D+A+ VF SM CR D+ ++  MI+  A+HG+  KAL++F +M Q G+ PD+V+
Sbjct: 251 YAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVS 310

Query: 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
           ++ VL AC+H GLVEEG + F  M     ++P  +HYG +VDL GRAG + EA D++ SM
Sbjct: 311 YLAVLCACNHGGLVEEGFRLFNSMENC-GVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSM 369

Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548
           P VPD  +W  LLGA + H  VE+AE V   LV       G ++L++N+Y+++ RW +  
Sbjct: 370 PTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVG 429

Query: 549 KLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           ++R+ MK R VKK PG S +E  G  ++F   DKSH    EIY  LDEI  + K +GY+
Sbjct: 430 RVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYV 488



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 185/360 (51%), Gaps = 15/360 (4%)

Query: 36  SVGQLKQFHAFIIKTGS---PQHQTQILYDKIISLSRGN---EIENLS-LQNPQVYLYNF 88
           S+   KQ HA +  TG    P    +    ++ +LS GN    I   S ++ P    +N 
Sbjct: 16  SLPHTKQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNA 75

Query: 89  IIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
           II+  + + NP  A A Y+ M+ K    +  T  +VLKAC +  +     Q+H + ++  
Sbjct: 76  IIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIVRKG 135

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
            +++  +  TL+ +YA  G I +  K+F        +RD+ SW  LI  + +   PTEA+
Sbjct: 136 FIADALLGTTLLDVYAKVGEIDSAEKVFD----EMVKRDIASWNALISGFAQGSKPTEAL 191

Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
             F  M     +P+ + ++  LSAC++LGD   G KIH YI    F+++  V   N +ID
Sbjct: 192 SLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVC--NVVID 249

Query: 268 MYLKCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           MY KCG +  A  VF+ M   K++V+WN+MI      G+  +AL++F +M   G+ PDD 
Sbjct: 250 MYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDV 309

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           + + VL +C + G +E G  +   ++   +  +     ++VD+  + GR+ +A+ +  SM
Sbjct: 310 SYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSM 369


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/447 (38%), Positives = 258/447 (57%), Gaps = 7/447 (1%)

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y  CG +     +F         RD+VSWT LI  Y +   P EAI    DM +A  RP
Sbjct: 1   MYCKCGAVSDARHVFD----KMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRP 56

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           +G     +L A    G  S+G ++H       +N   DV++ +AL+DMY +C  +  A  
Sbjct: 57  NGFTFTSLLKATGACGGCSIGEQMHALAVK--YNWDEDVYVGSALLDMYARCEQMDMAIM 114

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VFD +  KN VSWN++IAG   +   +  L  F  MQ  G     FT   + ++ A IG 
Sbjct: 115 VFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGA 174

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           LE G+WVH +L K+      F+GN ++ MYAK G +  A  VF  M  RD+ ++  M+  
Sbjct: 175 LEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTA 234

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
           LA +G   +A+  F E+ + GI+ +++TF+ VL+ACSH GLV+EG KH+ DM + YN+QP
Sbjct: 235 LAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEG-KHYFDMMKDYNVQP 293

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
           + +HY   VDL GRAGL++EAL  +  MP+ P A VWGALLGAC++H   ++ +   +++
Sbjct: 294 EIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHV 353

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
              +P+  G  +L+ NIY+S  +W +A ++RK MK   VKK P CS V++    + F   
Sbjct: 354 FELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVAD 413

Query: 581 DKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           D +HPK+ +IY++ +EI  + K  GY+
Sbjct: 414 DDTHPKSGDIYRMWEEINMRIKKAGYV 440



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 139/286 (48%), Gaps = 6/286 (2%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N  P EAI L  +ML     PN +T   +LKA        +G+Q+HA ++K     +VYV
Sbjct: 36  NYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYV 95

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +YA C  +     +F         ++ VSW  LI  + +       ++ F +M 
Sbjct: 96  GSALLDMYARCEQMDMAIMVF----DRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQ 151

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +            + SA +++G L  G  +H ++  +   L+   F+ N ++ MY K G+
Sbjct: 152 RNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLT--AFVGNTMLGMYAKSGS 209

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  ARKVFD M  +++V+WN+M+  L   G  KEA+  F  ++  G++ +  T + VL +
Sbjct: 210 MVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTA 269

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           C++ G ++ GK     +   ++  +     + VD+  + G + +A 
Sbjct: 270 CSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEAL 315


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 179/531 (33%), Positives = 294/531 (55%), Gaps = 12/531 (2%)

Query: 82  QVYLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V  +N +I C   + N  EA+  +  M   G  PN+ T+   + +C +   L  G ++H
Sbjct: 171 DVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIH 230

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              + +  L + ++ + L+ +Y  CG ++   ++F   Q P+  + +V+W ++I  Y   
Sbjct: 231 EELINSGFLLDSFISSALVDMYGKCGHLEMAIEVF--EQMPK--KTVVAWNSMISGYGLK 286

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
                 I  F  M    ++P    L  ++  CS+   L  G  +H Y   N   +  DVF
Sbjct: 287 GDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNR--IQSDVF 344

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           I+++L+D+Y KCG +  A  +F  +P   VVSWN MI+G    G+  EAL +F  M+   
Sbjct: 345 INSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSY 404

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           ++PD  T   VL +C+ +  LE G+ +H  + +  ++ +  +  AL+DMYAKCG +D+AF
Sbjct: 405 VEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAF 464

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF+ +  RD+ S+T+MI     HG+A+ AL++F+EM Q  ++PD VTF+ +LSAC HAG
Sbjct: 465 SVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAG 524

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF-VWGA 499
           LV+EGC +F  M  VY + P+ EHY C++DL GRAG + EA ++++  P + D   +   
Sbjct: 525 LVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLST 584

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           L  AC++H  ++L   +   L+  +P+    YIL++N+Y+S ++W E   +R KMKE  +
Sbjct: 585 LFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGL 644

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL----DEIMHQSKNHGY 606
           KK PGCS +E+  +   F   D SH     ++K L    D +  +SK   Y
Sbjct: 645 KKNPGCSWIEINQKILPFFVEDNSHLHLELVFKCLSYLSDHMEDESKPFTY 695



 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 152/483 (31%), Positives = 268/483 (55%), Gaps = 34/483 (7%)

Query: 56  QTQILYDKIISLSRGNEI---ENL------------------SLQNP-QVYLYNFIIQCL 93
           Q ++++ K+++L   N+I   +NL                  +++NP ++ L+N ++   
Sbjct: 21  QGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGY 80

Query: 94  S-NANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN 151
           + N   +EA+ L+ ++L    L P++YT P VLKAC       +G+ +H   +KT L+ +
Sbjct: 81  TKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMD 140

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
           + V ++L+ +YA C   +    ++ F + P  ++D+  W T+I  Y +     EA+  F 
Sbjct: 141 IVVGSSLVGMYAKCNAFEKA--IWLFNEMP--EKDVACWNTVISCYYQSGNFKEALEYFG 196

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            M +    P+ + +   +S+C++L DL+ G++IH  + ++ F L  D FI +AL+DMY K
Sbjct: 197 LMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLL--DSFISSALVDMYGK 254

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           CG++  A +VF++MP K VV+WNSMI+G   +G     + +F+RM   G+KP   TL  +
Sbjct: 255 CGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSL 314

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           +  C+    L  GK+VH Y  +N I +D FI ++L+D+Y KCG+++ A  +F+ +    V
Sbjct: 315 IMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKV 374

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFL 450
            S+  MI G    GK ++AL +FSEM +  +EPD +TF  VL+ACS    +E+G + H L
Sbjct: 375 VSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNL 434

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            + +   L       G ++D++ + G + EA  + K +P   D   W +++ A   H + 
Sbjct: 435 IIEK--KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGQA 491

Query: 511 ELA 513
            +A
Sbjct: 492 YVA 494



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 224/494 (45%), Gaps = 46/494 (9%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           +T  L  +L+AC  S+SL+ G+ +H   +   L +++++   L+ LY  C L      +F
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61

Query: 176 HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSK 234
              ++P    ++  W  L+  Y K     EA+  F  +     L+PD      VL AC  
Sbjct: 62  DNMENPC---EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGG 118

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           L    LG  IH  +      L  D+ + ++L+ MY KC     A  +F+EMP K+V  WN
Sbjct: 119 LYKYVLGKMIHTCLVKT--GLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWN 176

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           ++I+     G FKEAL+ F  M+  G +P+  T+   ++SCA +  L  G  +H  L  +
Sbjct: 177 TVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINS 236

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
               D FI +ALVDMY KCG ++ A  VF  M  + V ++ +MI G  + G +   + +F
Sbjct: 237 GFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLF 296

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEG----------------------------C 446
             M   G++P   T   ++  CS +  + EG                            C
Sbjct: 297 KRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKC 356

Query: 447 KHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMP---LVPDAFVWGALL 501
                   ++ L P+++   +  M+  +   G + EAL L   M    + PDA  + ++L
Sbjct: 357 GKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVL 416

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILM---TNIYSSKNRWKEALKLRKKMKERK 558
            AC   A +E  E +  NL+  E + D   ++M    ++Y+      EA  + K + +R 
Sbjct: 417 TACSQLAALEKGEEI-HNLI-IEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRD 474

Query: 559 VKKTPGCSLVEVYG 572
           +      S++  YG
Sbjct: 475 L--VSWTSMITAYG 486


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/585 (32%), Positives = 312/585 (53%), Gaps = 30/585 (5%)

Query: 41  KQFHAFIIKTGSPQHQTQILYDKIISLS------RGNEIENL-----SLQNPQVYLYNFI 89
           K  H  +IKTG       ++ D ++  S      + N  E        +    V  +N +
Sbjct: 126 KMIHTCLIKTG-------LMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTV 178

Query: 90  IQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I C   + N  +A+  +  M   G  PN+ T+   + +C +   L  G ++H   + +  
Sbjct: 179 ISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGF 238

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
           L + ++ + L+ +Y  CG ++   ++F   Q P+  + +V+W ++I  Y         I 
Sbjct: 239 LLDSFISSALVDMYGKCGHLEMAIEIF--EQMPK--KTVVAWNSMISGYGLKGDIISCIQ 294

Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
            F  M    ++P    L  ++  CS+   L  G  +H Y   N   + PDVF++++L+D+
Sbjct: 295 LFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNR--IQPDVFVNSSLMDL 352

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KCG +  A K+F  +P   VVSWN MI+G    G+  EAL +F  M+   ++ D  T 
Sbjct: 353 YFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITF 412

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             VL +C+ +  LE GK +H  + +  ++ +  +  AL+DMYAKCG +D+AF VF+ +  
Sbjct: 413 TSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPK 472

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           RD+ S+T+MI     HG A+ AL++F+EM Q  ++PD V F+ +LSAC HAGLV+EGC +
Sbjct: 473 RDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYY 532

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF-VWGALLGACKIH 507
           F  M  VY + P+ EHY C++DL GRAG + EA ++++  P + D   +   L  AC++H
Sbjct: 533 FNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLH 592

Query: 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567
             ++L   +   L+  +P+    YIL++N+Y+S ++W E   +R KMKE  +KK PGCS 
Sbjct: 593 RNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSW 652

Query: 568 VEVYGEFYEFRKGDKSHPKTLEIYKLL----DEIMHQSKNHGYIL 608
           +E+  +   F   D SH     ++K L    D +  +SK+  Y L
Sbjct: 653 IEINQKILPFFVEDNSHLHLELVFKCLSYLSDHMEDESKSFTYHL 697



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 151/494 (30%), Positives = 264/494 (53%), Gaps = 25/494 (5%)

Query: 18  TFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS 77
           + +Q  L+HQ       K V    Q   F+ KT   Q+ +  LYD    +         +
Sbjct: 18  SLKQGKLIHQ-------KVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFD-------N 63

Query: 78  LQNP-QVYLYNFIIQCLS-NANPLEAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLR 134
           ++NP ++ L+N ++   + N   +EA+ L+ ++L    L P++YT P V KAC       
Sbjct: 64  MENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYV 123

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
           +G+ +H   +KT L+ ++ V ++L+ +Y  C   +    ++ F + P  ++D+  W T+I
Sbjct: 124 LGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKA--IWLFNEMP--EKDVACWNTVI 179

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
             Y +     +A+  F  M +    P+ + +   +S+C++L DL+ G++IH  + ++ F 
Sbjct: 180 SCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFL 239

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           L  D FI +AL+DMY KCG++  A ++F++MP K VV+WNSMI+G   +G     + +F+
Sbjct: 240 L--DSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFK 297

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           RM   G+KP   TL  ++  C+    L  GK+VH Y  +N I  D F+ ++L+D+Y KCG
Sbjct: 298 RMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCG 357

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           +++ A  +F+ +    V S+  MI G    GK ++AL +FSEM +  +E D +TF  VL+
Sbjct: 358 KVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLT 417

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           ACS    +E+G K   ++     L       G ++D++ + G + EA  + K +P   D 
Sbjct: 418 ACSQLAALEKG-KEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDL 475

Query: 495 FVWGALLGACKIHA 508
             W +++ A   H 
Sbjct: 476 VSWTSMITAYGSHG 489



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 133/280 (47%), Gaps = 23/280 (8%)

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           D   L+ +L AC     L  G  IH+ +      L  D+F+   LI+ YL C     A+ 
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVT--LGLQNDIFLCKTLINQYLSCHLYDHAKC 59

Query: 281 VFDEMPVKNVVS-WNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANI 338
           VFD M     +S WN ++AG T    + EAL++F ++     LKPD +T   V  +C  +
Sbjct: 60  VFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGL 119

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
               LGK +HT L K  +  D  +G++LV MY KC   ++A  +F  M  +DV  +  +I
Sbjct: 120 HRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVI 179

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
                 G    AL+ F  M + G EP+ VT    +S+C+            LD++R   +
Sbjct: 180 SCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCA----------RLLDLNRGMEI 229

Query: 459 QPQTEHYG---------CMVDLFGRAGLIREALDLIKSMP 489
             +  + G          +VD++G+ G +  A+++ + MP
Sbjct: 230 HEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMP 269


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/488 (37%), Positives = 285/488 (58%), Gaps = 9/488 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L++C  S+++R G+Q+HA  + + L  +  +   L+ LYA CGL+    +LF   + P 
Sbjct: 69  ILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFD--EMPN 126

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFD--MCQANLRPDGMILVIVLSACSKLGDLSL 240
            Q ++  W  LI+AY + D P EA +  +   +   ++ PD      VL AC+ L DL  
Sbjct: 127 -QGNVFLWNVLIRAYAR-DGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGA 184

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G ++H  +    +  + DVF+   LIDMY KCG +  A  VFD   V++ V WNSMIA  
Sbjct: 185 GREVHDRVMRTSW--AADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAAC 242

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
              G+  EAL + R M   G+ P   TLV  +++ A+ G L  G+ +H Y  +    +  
Sbjct: 243 GQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQD 302

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQ 419
            +  +L+DMYAK G +  A  +F  +  R++ S+ AMI G  +HG A  A ++F  M ++
Sbjct: 303 KLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNE 362

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             + PD +TFVGVLSAC+H G+V+E  + F  M  VY+++P  +HY C+VD+ G +G  +
Sbjct: 363 AQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFK 422

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA D+IK M + PD+ +WGALL  CKIH  VELAE+ +  L+  EPE  G Y+L++NIY+
Sbjct: 423 EASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYA 482

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
              +W+EA ++RK M  R +KK   CS +E+ G+ + F  GD SHP++ EIY+ L+ +  
Sbjct: 483 QSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEG 542

Query: 600 QSKNHGYI 607
                GY+
Sbjct: 543 LISQTGYV 550



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 186/385 (48%), Gaps = 24/385 (6%)

Query: 34  SKSVGQLKQFHAFIIKTG---SPQHQTQI--LYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           S++V   +Q HA ++ +G        T++  LY     +S    + +       V+L+N 
Sbjct: 76  SRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNV 135

Query: 89  IIQCLSNANPLEA-IALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           +I+  +   P EA I LYREML  G + P+ +T P VLKAC     L  G++VH   M+T
Sbjct: 136 LIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRT 195

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
           +  ++V+V   L+ +YA CG +     +F         RD V W ++I A  +   P EA
Sbjct: 196 SWAADVFVCAGLIDMYAKCGCVDEAWAVF----DSTTVRDAVVWNSMIAACGQNGRPAEA 251

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +    +M    + P  + LV  +SA +  G L  G ++H Y     F  S D  +  +L+
Sbjct: 252 LALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFG-SQDK-LKTSLL 309

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDD 325
           DMY K G +  AR +FD++  + ++SWN+MI G    G    A ++FRRM+    + PD 
Sbjct: 310 DMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDH 369

Query: 326 FTLVCVLNSCANIGWLELGK-----WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
            T V VL++C + G ++  K      V  Y  K  +         LVD+    GR  +A 
Sbjct: 370 ITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHY----TCLVDVLGHSGRFKEAS 425

Query: 381 GVFRSMKCR-DVYSYTAMIVGLAIH 404
            V + M  + D   + A++ G  IH
Sbjct: 426 DVIKGMLVKPDSGIWGALLNGCKIH 450



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 154/370 (41%), Gaps = 79/370 (21%)

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           + I  C  N  P EA+AL R M  +G+ P   TL   + A   + +L  G+++H Y  + 
Sbjct: 237 SMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRR 296

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
              S   +  +L+ +YA  G +     LF    H    R+L+SW  +I  +    +   A
Sbjct: 297 GFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFH----RELISWNAMICGFGMHGHADHA 352

Query: 207 ILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
              F  M  +A + PD +  V VLSAC                  NH             
Sbjct: 353 CELFRRMRNEAQVMPDHITFVGVLSAC------------------NHG------------ 382

Query: 266 IDMYLKCGNIPSARKVFDEM----PVKNVVS-WNSMIAGLTHRGQFKEALDIFRRMQGLG 320
                  G +  A++VFD M     +K +V  +  ++  L H G+FKEA D+   ++G+ 
Sbjct: 383 -------GMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDV---IKGML 432

Query: 321 LKPDDFTLVCVLNSC---ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
           +KPD      +LN C    N+   EL   +H  ++    +   ++   L ++YA+ G+ +
Sbjct: 433 VKPDSGIWGALLNGCKIHKNVELAELA--LHKLIELEPEDAGNYV--LLSNIYAQSGKWE 488

Query: 378 QAFGVFRSMKCRDVYSYTA------------MIVGLAIHGKAWKALDIFSEM-------S 418
           +A  V + M  R +    A             +VG A H    ++ +I+ E+       S
Sbjct: 489 EAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHP---RSDEIYEELERLEGLIS 545

Query: 419 QVGIEPDEVT 428
           Q G  PD  +
Sbjct: 546 QTGYVPDTTS 555


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 175/496 (35%), Positives = 273/496 (55%), Gaps = 40/496 (8%)

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           GLLP    LP   K+C  +  L +G+Q+H+ + +  L  NV+V ++ + +YA CG     
Sbjct: 7   GLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDA 66

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL-RPDGMILVIVLS 230
           +++F   Q+    RD+VSW  +I  +        A+  F ++      +PD   +  +L 
Sbjct: 67  YQMFEEMQY----RDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILP 122

Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290
           +  K                                    +  +I   + VFDEM  K +
Sbjct: 123 SMGKA-----------------------------------RVEDIALLKGVFDEMRFKGL 147

Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
           +SWN+M+A  T+     EA+++F RMQ  G++PD  TL  VL SC  +  L LGK +H  
Sbjct: 148 ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEV 207

Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
           + +  + +   + NAL+DMYA CG + +A  VF SM  RDV S+T++I     HG   +A
Sbjct: 208 IKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREA 267

Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
           +D+F +M   G+EPD + FV +L+ACSHAGL++ G  +F  M+  +++ P+ EHY CMVD
Sbjct: 268 IDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVD 327

Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
           L GRAG IREA D I  MP+ P+  VWGALLGAC+IH+ +++  +  ++L+R  P+  G 
Sbjct: 328 LLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGY 387

Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
           Y+L++NIY+   RW +   +R  M+ + +KK PG S  E+    + F  GD SHP++  I
Sbjct: 388 YVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMI 447

Query: 591 YKLLDEIMHQSKNHGY 606
           YK L E++ + +  GY
Sbjct: 448 YKKLSELLRRIREMGY 463



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 109/207 (52%), Gaps = 6/207 (2%)

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
           +N   +EA+ L+  M   G+ P+  TL  VL +C +  +L +G+++H    +  + S++ 
Sbjct: 159 NNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSML 218

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           + N LM +YA CG +K    +F         RD+VSWT++I AY +  +  EAI  F  M
Sbjct: 219 LENALMDMYANCGCLKEARDVF----DSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKM 274

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
           C   L PD +  V +L+ACS  G L +G K + Y   + F+++P +  +  ++D+  + G
Sbjct: 275 CGQGLEPDSIAFVAILAACSHAGLLDMG-KHYFYSMTSEFHIAPKLEHYACMVDLLGRAG 333

Query: 274 NIPSARKVFDEMPVK-NVVSWNSMIAG 299
            I  A      MP+K N   W +++  
Sbjct: 334 CIREAYDFIMVMPIKPNERVWGALLGA 360



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 18/273 (6%)

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           QG GL P    L     SCA    L LG+ +H+   +  ++ + F+ ++ + MYA+CGR 
Sbjct: 4   QGPGLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRP 63

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI-EPDEVTFVGVLSA 435
           D A+ +F  M+ RDV S+ AMI G A  G   +A+D+F E+  +   +PD  T   +L +
Sbjct: 64  DDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS 123

Query: 436 CSHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP---LV 491
              A + +    K   D  R   L      +  M+ ++    +  EA++L   M    + 
Sbjct: 124 MGKARVEDIALLKGVFDEMRFKGLIS----WNAMLAVYTNNEMHVEAVELFMRMQKDGIE 179

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN----IYSSKNRWKEA 547
           PDA     +L +C   + + L + + E + R       + +L+ N    +Y++    KEA
Sbjct: 180 PDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRM---CSSMLLENALMDMYANCGCLKEA 236

Query: 548 LKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
             +   M  R V      S++  YG     R+ 
Sbjct: 237 RDVFDSMGTRDV--VSWTSIISAYGRHGHGREA 267


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 189/554 (34%), Positives = 299/554 (53%), Gaps = 40/554 (7%)

Query: 84  YLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           +L+N II+  S+  +P EA+ L   ML  G   + +TL  VLKAC +   ++ G Q+H  
Sbjct: 93  FLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGL 152

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH-------------------------- 176
             K    S++++ N L+  Y  CG +    ++F                           
Sbjct: 153 LKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLA 212

Query: 177 ---FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
              F   P  +R+L+SW +LI+ Y + +   + IL  + +       D +    ++  C 
Sbjct: 213 RVVFDCIPLEERNLISWNSLIRGYAQSE---DGILVAWQLFAKMPERDLISWNSMIDGCV 269

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
           K G +     +   + +       D+     +ID Y K G +  AR +FDEMP ++VV++
Sbjct: 270 KCGRMEDAQGLFDRMPNR------DIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAY 323

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           N+M+ G    G   EAL IF  MQ  G    D+ TL+  L++ A +G ++ G  +H +++
Sbjct: 324 NAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIE 383

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           +   + DG +G AL+DMY+KCG I+ A  VF ++K + V  + A+I GLAIHG    A D
Sbjct: 384 EIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFD 443

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
              EM ++ +EPD++TF+G+L+AC HAGLV+EG   F  M RV+ ++P+ +HYGCMVD+ 
Sbjct: 444 FLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVDIL 503

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           GRAG I EA + ++ MP  P+  +W +LL ACK H    + + V ENL+R +     +Y+
Sbjct: 504 GRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPSSYV 563

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           L +N+Y+   +W +  K+R  MK++ +KK PGCS +E+ G  Y F   DKSHP+   IY 
Sbjct: 564 LASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEGHVYAFFVQDKSHPQFSGIYS 623

Query: 593 LLDEIMHQSKNHGY 606
           +LD +      H Y
Sbjct: 624 ILDSLSMTDSEHSY 637



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 135/521 (25%), Positives = 222/521 (42%), Gaps = 73/521 (14%)

Query: 108 MLIKGLL---PNTYTLP--YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLY 162
           ML+ G L   P    +P   +LK C   + L    Q+HA  + T  + N ++   ++  +
Sbjct: 1   MLLSGNLNQQPWNSAIPTLVLLKKC---KRLSDINQIHARLLTTGFIKNTFLTTKIILSF 57

Query: 163 AV---CGLIKAVHKLFHFRQHPQAQRDLVS--------WTTLIQAYVKMDYPTEAILSFF 211
           +      LI+    +F FR H     +           W  +I+ Y     P EA+    
Sbjct: 58  STSLHAPLIEFARFIF-FRHHAFEFDEKEEEEEKDPFLWNAIIKTYSHGHDPKEAMWLVS 116

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271
            M +     D   L +VL ACS++G +  G++IH  +    F    D+F+ N LI  Y+K
Sbjct: 117 LMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLKKLEF--GSDLFLQNCLISFYVK 174

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF--------------RRMQ 317
           CG +  A +VFD MP ++ VS+NSMI G    G+   A  +F                ++
Sbjct: 175 CGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIR 234

Query: 318 GLGLKPDDFTLV----------------CVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
           G     D   +                  +++ C   G +E  + +   +     N D  
Sbjct: 235 GYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMP----NRDIV 290

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
               ++D YAK GR+D A  +F  M  RDV +Y AM+ G   +G   +AL IF  M   G
Sbjct: 291 SWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDG 350

Query: 422 -IEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
               D  T +  LSA +  G +++G   H       ++L  +      ++D++ + G I 
Sbjct: 351 NFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGV--ALIDMYSKCGSIE 408

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELA-EIVME-NLVRFEPEGDGAYILMTNI 537
            A+ + +++        W A++G   IH   ELA + +ME   +R EP+ D  +I + N 
Sbjct: 409 NAMMVFENIK-EKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPD-DITFIGLLNA 466

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTP------GCSLVEVYG 572
                  KE +   + M  R+V K        GC +V++ G
Sbjct: 467 CGHAGLVKEGMMCFELM--RRVHKVEPKLQHYGC-MVDILG 504


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 184/560 (32%), Positives = 299/560 (53%), Gaps = 32/560 (5%)

Query: 77  SLQNPQVYLYNFIIQCLSNANP-LEAIALYREMLIKG--LLPNTYTLPYVLKACWQSQSL 133
           S+       YN +I   S       A+ LY  +L  G  + P+  T+  ++ A       
Sbjct: 97  SMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDR 156

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF------------------ 175
            +G+Q H   ++     N +V + L+ +YA  GLI    ++F                  
Sbjct: 157 ALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGL 216

Query: 176 -HFRQHPQAQR--------DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
              +   +A+R        D ++WTT++  + +    ++A+  F  M    +  D     
Sbjct: 217 LRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFG 276

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
            +L+AC  L  L  G +IH YI   H++   +VF+ +AL+DMY KC +I  A   F  M 
Sbjct: 277 SILTACGALSALEQGKQIHAYIIRTHYD--DNVFVGSALVDMYSKCRSIKPAETAFRRMS 334

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
            KN++SW ++I G    G  +EA+ +F  MQ  G+ PDDFTL  V++SCAN+  LE G  
Sbjct: 335 CKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQ 394

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
            H     + +     + NALV +Y KCG I+ A  +F  M   D  S+TA++ G A  G+
Sbjct: 395 FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGR 454

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
           A + +D+F +M    ++PD VTF+GVLSACS AG VE+GC +F  M + + + P  +HY 
Sbjct: 455 AKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYT 514

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CM+DL+ R+G ++EA + IK MP+ PDA  WG LL AC++   +E+ +   ENL+  +P+
Sbjct: 515 CMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQ 574

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
              +Y+L+ +++++K  W +  +LR+ M++R+VKK PGCS ++   + + F   D+SHP 
Sbjct: 575 NPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPF 634

Query: 587 TLEIYKLLDEIMHQSKNHGY 606
           +  IY+ L+ +  +    GY
Sbjct: 635 SKGIYEKLEWLNSKMLEEGY 654



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 223/474 (47%), Gaps = 78/474 (16%)

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           N++ +N L+   A   L+  +  LF       AQRD VS+  +I  +        A+  +
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFA----SMAQRDTVSYNAVIAGFSGGGAHARAVRLY 126

Query: 211 FDMCQA--NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
             + +A  ++RP  + +  ++ A S LGD +LG + H  I    F +  + F+ + L+ M
Sbjct: 127 HTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGV--NAFVGSPLVGM 184

Query: 269 YLKCGNIPSARKVFDEMPVKNVV-------------------------------SWNSMI 297
           Y K G I  A++VFDEM  KNVV                               +W +M+
Sbjct: 185 YAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMV 244

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
            G T  G   +AL+ FRRM+  G+  D +T   +L +C  +  LE GK +H Y+ + H +
Sbjct: 245 TGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYD 304

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            + F+G+ALVDMY+KC  I  A   FR M C+++ S+TA+IVG   +G + +A+ +FSEM
Sbjct: 305 DNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEM 364

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
            + GI+PD+ T   V+S+C++   +EEG + F  ++ V  L         +V L+G+ G 
Sbjct: 365 QRDGIDPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVTLYGKCGS 423

Query: 478 IREALDLIKSMPLVPDAFVWGALL-GACKIHAKVELAEIVMENLVR-FEPEG-------- 527
           I +A  L   M L  D   W AL+ G  +     E  ++  + L +  +P+G        
Sbjct: 424 IEDAHRLFDEM-LFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLS 482

Query: 528 ---------------------------DGAYILMTNIYSSKNRWKEALKLRKKM 554
                                      D  Y  M ++YS   R KEA +  K+M
Sbjct: 483 ACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQM 536



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 13/276 (4%)

Query: 39  QLKQFHAFIIKTGSPQH-----QTQILYDKIISLSRG-NEIENLSLQNPQVYLYNFIIQC 92
           Q KQ HA+II+T    +         +Y K  S+         +S +N  +     I+  
Sbjct: 290 QGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNI-ISWTALIVGY 348

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
             N    EA+ ++ EM   G+ P+ +TL  V+ +C    SL  G Q H  ++ + L+  +
Sbjct: 349 GQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYI 408

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V N L+ LY  CG I+  H+LF          D VSWT L+  Y +     E I  F  
Sbjct: 409 TVSNALVTLYGKCGSIEDAHRLF----DEMLFHDQVSWTALVTGYAQFGRAKETIDLFEK 464

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M   +++PDG+  + VLSACS+ G +  G      +  +H  + P    +  +ID+Y + 
Sbjct: 465 MLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDH-GIVPIDDHYTCMIDLYSRS 523

Query: 273 GNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFK 307
           G +  A +   +MP+  + + W ++++    RG  +
Sbjct: 524 GRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDME 559



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 136/321 (42%), Gaps = 66/321 (20%)

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           P++F +NAL+        +     +F  M  ++ VS+N++IAG +  G    A+ ++  +
Sbjct: 70  PNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTL 129

Query: 317 --QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
              G  ++P   T+  ++ + + +G   LG+  H  + +     + F+G+ LV MYAK G
Sbjct: 130 LRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMG 189

Query: 375 RIDQAFGVFRSM----------------KC---------------RDVYSYTAMIVGLAI 403
            I  A  VF  M                +C               RD  ++T M+ G   
Sbjct: 190 LIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQ 249

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK--------HF------ 449
           +G   +AL+ F  M   GI  D+ TF  +L+AC     +E+G +        H+      
Sbjct: 250 NGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFV 309

Query: 450 ----LDM-SRVYNLQPQTEHY-----------GCMVDLFGRAGLIREALDLIKSMP---L 490
               +DM S+  +++P    +             ++  +G+ G   EA+ +   M    +
Sbjct: 310 GSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI 369

Query: 491 VPDAFVWGALLGACKIHAKVE 511
            PD F  G+++ +C   A +E
Sbjct: 370 DPDDFTLGSVISSCANLASLE 390


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 176/450 (39%), Positives = 272/450 (60%), Gaps = 10/450 (2%)

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LR 219
           +YA CGL     K+F       + +DLV WT +I AY + + P EA++ F  M Q   L 
Sbjct: 1   MYAKCGLFVDCRKIFD----EMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLL 56

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            D + +V V SA  +LGD+     +H Y      +L  ++ + N+++ M+ KCGN   AR
Sbjct: 57  ADSIAVVSVASAVGQLGDVKNAHTVHGYAFRK--SLIEELCVGNSILAMHTKCGNTEKAR 114

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            VFD M  ++V+SWNSM++G T  GQ  EAL +F  M+    +P   T + ++++CA +G
Sbjct: 115 LVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLG 174

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAM 397
           +  LG+  H ++  + +  D  + NAL+DMYAKCG +++A  +F  +    R+  S+  +
Sbjct: 175 FRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVL 234

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I G  +HG   +AL++FS M + G+EP+  TF  +LSACSHAGL++EG K F +M R+ +
Sbjct: 235 ISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRL-S 293

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
           +  + +H+ C+VD+ GRAGL++EA DLIK MP  P   VWGALL ACKIH  +EL +   
Sbjct: 294 VTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAA 353

Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
            NL++ EP   G Y+LM+NIY++ N+WKE  KLR+ MK + +KK    S++E   +   F
Sbjct: 354 SNLLQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGF 413

Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              D+ +P   E+YK ++ +  + K  GY+
Sbjct: 414 HTADQENPYRHEVYKKMESLAIEMKMAGYV 443



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 181/341 (53%), Gaps = 12/341 (3%)

Query: 98  PLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           P EA+ L+++M  + GLL ++  +  V  A  Q   ++    VH Y+ + +L+  + V N
Sbjct: 39  PEEALILFKKMQQEEGLLADSIAVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGN 98

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
           +++ ++  CG  +    +F        +RD++SW +++  Y +    TEA+L F +M  +
Sbjct: 99  SILAMHTKCGNTEKARLVFDM----MMERDVISWNSMLSGYTQNGQATEALLLFDEMRDS 154

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
           + +P  +  +I++SAC+ LG   LG K H +I D+   +  D  + NAL+DMY KCG++ 
Sbjct: 155 DCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEI--DTNLSNALMDMYAKCGDLE 212

Query: 277 SARKVFDEMP--VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
            A  +F+ +P   +N  SWN +I+G    G  KEAL++F RMQ  G++P+ FT   +L++
Sbjct: 213 KAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSA 272

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS- 393
           C++ G ++ G+     + +  +  +      +VDM  + G + +AF + + M        
Sbjct: 273 CSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGV 332

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           + A+++   IHG         S + Q  +EP+   +  ++S
Sbjct: 333 WGALLLACKIHGNMELGKTAASNLLQ--LEPNHTGYYVLMS 371



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 4/192 (2%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    EA+ L+ EM      P   T   ++ AC       +G++ H + + + +  +  +
Sbjct: 138 NGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNL 197

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N LM +YA CG ++    LF+    P  +R+  SW  LI  Y    +  EA+  F  M 
Sbjct: 198 SNALMDMYAKCGDLEKAVDLFN--GIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQ 255

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  + P+      +LSACS  G +  G K   +      +++ +   H  ++DM  + G 
Sbjct: 256 EEGVEPNHFTFTSILSACSHAGLIDEGRKC--FAEMKRLSVTLEDKHHACVVDMLGRAGL 313

Query: 275 IPSARKVFDEMP 286
           +  A  +  EMP
Sbjct: 314 LQEAFDLIKEMP 325


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 184/510 (36%), Positives = 294/510 (57%), Gaps = 9/510 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ L+ +M ++G+ PN +T   VL       ++  G QVH   +K+ L S ++V N+++
Sbjct: 176 QALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMV 235

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+   ++     +F   ++    R+ VSW ++I  +V      EA   F+ M    ++
Sbjct: 236 NMYSKSLMVSDAKAVFDSMEN----RNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
               I   V+  C+ + ++S   ++H  +  N  +   D+ I  AL+  Y KC  I  A 
Sbjct: 292 LTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF--DLNIKTALMVAYSKCSEIDDAF 349

Query: 280 KVFDEM-PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GLGLKPDDFTLVCVLNSCAN 337
           K+F  M  V+NVVSW ++I+G    G+   A+++F +M+   G++P++FT   VLN+CA 
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAA 409

Query: 338 -IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
               +E GK  H+   K+  +    + +ALV MYAK G I+ A  VF+    RD+ S+ +
Sbjct: 410 PTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNS 469

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           MI G A HG   K+L IF EM    +E D +TF+GV+SAC+HAGLV EG ++F  M + Y
Sbjct: 470 MISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDY 529

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
           ++ P  EHY CMVDL+ RAG++ +A+DLI  MP    A +W  LL AC++H  V+L E+ 
Sbjct: 530 HIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELA 589

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
            E L+  +P+   AY+L++NIY++   W+E  K+RK M  +KVKK  G S +EV  + + 
Sbjct: 590 AEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFS 649

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           F  GD SHP++  IY  L+E+  + K+ GY
Sbjct: 650 FMAGDLSHPQSDRIYLKLEELSIRLKDAGY 679



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 208/437 (47%), Gaps = 9/437 (2%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    EA+ L+  +   G   +  +L  VLK C       VG+QVH   +K   + +V V
Sbjct: 70  NDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSV 129

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
             +L+ +Y     ++   ++F         +++VSWT+L+  Y +     +A+  F  M 
Sbjct: 130 GTSLVDMYMKTESVEDGERVFD----EMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQ 185

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              ++P+      VL   +  G +  G+++H  +  +   L   +F+ N++++MY K   
Sbjct: 186 LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS--GLDSTIFVGNSMVNMYSKSLM 243

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A+ VFD M  +N VSWNSMIAG    G   EA ++F RM+  G+K        V+  
Sbjct: 244 VSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKL 303

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-CRDVYS 393
           CANI  +   K +H  + KN  + D  I  AL+  Y+KC  ID AF +F  M   ++V S
Sbjct: 304 CANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVS 363

Query: 394 YTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           +TA+I G   +G+  +A+++F +M  + G+EP+E TF  VL+AC+      E  K F   
Sbjct: 364 WTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSC 423

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
           S              +V ++ + G I  A ++ K   +  D   W +++     H   + 
Sbjct: 424 SIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQ-VDRDLVSWNSMISGYAQHGCGKK 482

Query: 513 AEIVMENLVRFEPEGDG 529
           +  + E +     E DG
Sbjct: 483 SLKIFEEMRSKNLELDG 499



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 162/336 (48%), Gaps = 23/336 (6%)

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
           F + PQ  + L     L+  + + D   EA+  F  + ++    DG  L  VL  C  L 
Sbjct: 49  FDETPQ--QGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           D  +G ++H       F    DV +  +L+DMY+K  ++    +VFDEM VKNVVSW S+
Sbjct: 107 DRIVGKQVHCQCIKCGF--VEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           +AG    G  ++AL +F +MQ  G+KP+ FT   VL   A  G +E G  VHT + K+ +
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
           ++  F+GN++V+MY+K   +  A  VF SM+ R+  S+ +MI G   +G   +A ++F  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL----- 471
           M   G++  +  F  V+  C+          +  +MS    L  Q    G   DL     
Sbjct: 285 MRLEGVKLTQTIFATVIKLCA----------NIKEMSFAKQLHCQVIKNGSDFDLNIKTA 334

Query: 472 ----FGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
               + +   I +A  L   M  V +   W A++  
Sbjct: 335 LMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 185/405 (45%), Gaps = 30/405 (7%)

Query: 6   TVASGSRYNDINT-----FQQLSLLHQSPR----------LESSKSVGQLKQFHAFIIKT 50
           ++ +G R N +N      F Q+ L    P           L +  +V +  Q H  +IK+
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 51  GSPQ-----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQC-LSNANPLEAIAL 104
           G        +    +Y K + +S    + + S++N     +N +I   ++N   LEA  L
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFD-SMENRNAVSWNSMIAGFVTNGLDLEAFEL 281

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           +  M ++G+         V+K C   + +   +Q+H   +K     ++ +   LM  Y+ 
Sbjct: 282 FYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSK 341

Query: 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGM 223
           C  I    KLF      Q   ++VSWT +I  YV+      A+  F  M  +  + P+  
Sbjct: 342 CSEIDDAFKLFCMMHGVQ---NVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEF 398

Query: 224 ILVIVLSACSK-LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
               VL+AC+     +  G + H     + F  S  + + +AL+ MY K GNI SA +VF
Sbjct: 399 TFSSVLNACAAPTASVEQGKQFHSCSIKSGF--SNALCVSSALVTMYAKRGNIESANEVF 456

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
                +++VSWNSMI+G    G  K++L IF  M+   L+ D  T + V+++C + G + 
Sbjct: 457 KRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVN 516

Query: 343 LGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
            G+     + K+ HI       + +VD+Y++ G +++A  +   M
Sbjct: 517 EGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKM 561



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 2/226 (0%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           ++++FDE P + +   N ++   +   Q KEAL++F  ++  G   D  +L CVL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +    +GK VH    K     D  +G +LVDMY K   ++    VF  M+ ++V S+T++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           + G   +G   +AL +FS+M   GI+P+  TF  VL   +  G VE+G +    M     
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           L         MV+++ ++ ++ +A  +  SM    +A  W +++  
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAG 268


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/614 (32%), Positives = 320/614 (52%), Gaps = 34/614 (5%)

Query: 10  GSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI-----LY--- 61
           GS +N +     LS         S K +    + H F++K G    +  +     +Y   
Sbjct: 137 GSYHNRVACLAALS------SCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKC 190

Query: 62  ------DKIISLSRGNEI--ENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGL 113
                 + +    R NE+   N+++ N  +  Y      +SN     A+ L+ EML  G+
Sbjct: 191 GDIKNAENVFERIRDNELVGRNMAVWNVMILGY------VSNECLSLALELFVEMLELGI 244

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
            P++ T+  VL  C Q   L VG+Q+H   +   L  +V V   LM +Y  CG  +   +
Sbjct: 245 SPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQ 304

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
           +F   Q+     +LV W +++    +  YP EA+  F +       PD +IL+  L ACS
Sbjct: 305 IFKRSQN----HNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACS 360

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
            L     G+ IH +     F+   DVF+  AL+D Y KCG++  A++VF  +  +++VSW
Sbjct: 361 FLSLKPRGMAIHGFAIKMGFD--SDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSW 418

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           N++I+G        EAL  FR MQ   +KP+  T+ C+L+ C ++  + L K VH YL +
Sbjct: 419 NALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLR 478

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
           +   T+  + N+L+  YAKCG I  +  VF  +  R+  ++ ++++G  +HG+  +    
Sbjct: 479 HWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFAT 538

Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473
           F +M +  I+PD  TF  +LS+CSH+G V+ G K+F  M   YNL+P+ E Y CMVDL G
Sbjct: 539 FEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLG 598

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
           RAG + +A DLI SMP  PD  +WG+LL +CK H   +LAE+V  ++   +    G  +L
Sbjct: 599 RAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSVGYRVL 658

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
           + N+Y       E  ++R  +K+  +KK PGCS +EV    + F  GD SH ++ +IY  
Sbjct: 659 LANLYEDSGNLNEVFRVRTDIKQMGLKKQPGCSWIEVDNSIHIFVAGDYSHDRSGDIYAT 718

Query: 594 LDEIMHQSKNHGYI 607
           ++ +  + K  GY+
Sbjct: 719 IESLSLEMKRVGYV 732



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 207/425 (48%), Gaps = 20/425 (4%)

Query: 89  IIQCLSNANPLEAIALYREMLIKGLLPNTYTL-PYVLKACWQSQSLRVGQQVHAYSMKTA 147
           I +C  +    +AI +Y + +  G     +   P ++KA      +  G+Q+H + +K  
Sbjct: 10  IKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLLKFG 69

Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
            L +++V N+L+ +Y  CG       +F   +    +RD VSW T+I  + +     +++
Sbjct: 70  FLQDIFVKNSLLGMYWKCGAGGNAVDMFERME----ERDSVSWNTMISGFCQSGDYVKSL 125

Query: 208 LSFFDMCQ--ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           + F  M +       + +  +  LS+C+ +  L+ G++IH ++      +  D F+ +AL
Sbjct: 126 VMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKK--GVDSDEFLVSAL 183

Query: 266 IDMYLKCGNIPSARKVFD-----EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           I+MY+KCG+I +A  VF+     E+  +N+  WN MI G         AL++F  M  LG
Sbjct: 184 IEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELG 243

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           + PD  T+V VL  C+ +  L +GK +H  +    ++ D  +G AL++MY KCG  + + 
Sbjct: 244 ISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSL 303

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE-MSQVGIEPDEVTFVGVLSACSHA 439
            +F+  +  ++  + ++++  A +G   +AL+ FSE M   G  PD V  +  L ACS  
Sbjct: 304 QIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGF-PDPVILLAALRACSFL 362

Query: 440 GLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498
            L   G   H   +   ++        G +VD +G+ G +  A  +   +    D   W 
Sbjct: 363 SLKPRGMAIHGFAIKMGFDSDVFVG--GALVDFYGKCGDMEYAQQVFYGLS-TRDLVSWN 419

Query: 499 ALLGA 503
           AL+  
Sbjct: 420 ALISG 424



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV-CVLNSCANIGWLELGKWV 347
           +V   N MI   T  G F++A+ ++      G   ++F    C++ +   +  +  GK +
Sbjct: 2   DVSKVNRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQI 61

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H +L K     D F+ N+L+ MY KCG    A  +F  M+ RD  S+  MI G    G  
Sbjct: 62  HGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDY 121

Query: 408 WKALDIFSEMSQV--GIEPDEVTFVGVLSACSHAGLVEEG 445
            K+L +F  M +   G   + V  +  LS+C+    +  G
Sbjct: 122 VKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHG 161


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 176/497 (35%), Positives = 288/497 (57%), Gaps = 44/497 (8%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           + +HA+ +K +L  + ++   ++ +      +     LF   + P        +  +I+A
Sbjct: 31  KSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYL----YNAMIRA 86

Query: 197 YVKMDYPTEAILSFFDMCQAN-------LRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           +        AIL + +M +         + PD      V+ +CS L   +LG ++H ++ 
Sbjct: 87  HTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLC 146

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM------------------------ 285
              F    ++ + NALIDMY KC ++  A KVFD M                        
Sbjct: 147 --KFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKA 204

Query: 286 -------PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
                  P + +VSW +MI+G T  G + +AL +FR+MQ +G++PD+ +++ VL +CA +
Sbjct: 205 GALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQL 264

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G LE+GKW+H Y D+N +     I NAL++MY+KCG I QA+ +F  M   DV S++ MI
Sbjct: 265 GALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMI 324

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
            GLA HGKA +A+++F  M +  IEP+ +TF+G+LSAC+HAG   EG  +F  MS+ Y++
Sbjct: 325 GGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHI 384

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
           +P+ EHYGC+VD+ GRAG + +ALD+I+ MP+ PD+ +WG+LL +C+ H+ +++A I ME
Sbjct: 385 EPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAME 444

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
           +L   EP+  G Y+L++NIY+   +W    ++RK +K + +KKTPG SL+++     EF 
Sbjct: 445 HLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLIDINNVVQEFV 504

Query: 579 KGDKSHPKTLEIYKLLD 595
             D S P + +I+ LL+
Sbjct: 505 SWDDSKPFSRDIFWLLE 521



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 219/445 (49%), Gaps = 55/445 (12%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS--------LQN 80
           P L++ K++ +LK  HA +IK      Q+  L  K++ +   ++ E+L         ++ 
Sbjct: 19  PILQNCKNIVELKSIHAHVIKYS--LSQSSFLVTKMVDVC--DKTEDLGYASLLFKQVKE 74

Query: 81  PQVYLYNFIIQCLSNANPLEAIAL--YREMLI-------KGLLPNTYTLPYVLKACWQSQ 131
           P  YLYN +I+  ++ N + A+A+  Y+EML          + P+ +T P+V+K+C    
Sbjct: 75  PNGYLYNAMIRAHTH-NKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLV 133

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA-------- 183
              +G+QVHA+  K    SN+ + N L+ +Y  C  +   HK+F       A        
Sbjct: 134 CYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIIS 193

Query: 184 -------------------QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI 224
                               R +VSWT +I  Y ++    +A+  F  M    + PD + 
Sbjct: 194 GHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEIS 253

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
           ++ VL AC++LG L +G  IH Y   N   L     I NAL++MY KCG I  A ++FD+
Sbjct: 254 IISVLPACAQLGALEVGKWIHMYCDRN--GLLRKTSICNALMEMYSKCGCIGQAYQLFDQ 311

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           M   +V+SW++MI GL + G+ +EA+++F+RM+   ++P+  T + +L++CA+ G+   G
Sbjct: 312 MSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEG 371

Query: 345 KWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLA 402
                 + K+ HI  +      LVD+  + GR+ QA  V   M  + D   + +++    
Sbjct: 372 LAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCR 431

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEV 427
            H     A+     + +  +EPD+ 
Sbjct: 432 THSNLDIAIIAMEHLEE--LEPDDT 454



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 161/371 (43%), Gaps = 46/371 (12%)

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
            V +L  C  + +L     IH ++    ++LS   F+   ++D+  K  ++  A  +F +
Sbjct: 17  FVPILQNCKNIVELK---SIHAHVI--KYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQ 71

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-------LKPDDFTLVCVLNSCAN 337
           +   N   +N+MI   TH   +  A+  ++ M  L        + PD FT   V+ SC+ 
Sbjct: 72  VKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSG 131

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC------------------------ 373
           +    LGK VH +L K    ++  + NAL+DMY KC                        
Sbjct: 132 LVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSI 191

Query: 374 -------GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
                  G++ +A  +F  M  R + S+TAMI G    G    AL +F +M  VG+EPDE
Sbjct: 192 ISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDE 251

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           ++ + VL AC+  G +E G    +   R   L  +T     +++++ + G I +A  L  
Sbjct: 252 ISIISVLPACAQLGALEVGKWIHMYCDR-NGLLRKTSICNALMEMYSKCGCIGQAYQLFD 310

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG-AYILMTNIYSSKNRWK 545
            M    D   W  ++G    H K   A  + + + + + E +G  ++ + +  +    W 
Sbjct: 311 QMS-KGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWN 369

Query: 546 EALKLRKKMKE 556
           E L     M +
Sbjct: 370 EGLAYFDSMSK 380



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 129/248 (52%), Gaps = 12/248 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+ ++R+M I G+ P+  ++  VL AC Q  +L VG+ +H Y  +  LL    + N LM
Sbjct: 234 DALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALM 293

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ CG I   ++LF       ++ D++SW+T+I          EAI  F  M +A + 
Sbjct: 294 EMYSKCGCIGQAYQLF----DQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIE 349

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+G+  + +LSAC+  G  + G+     ++ + +++ P+V  +  L+D+  + G +  A 
Sbjct: 350 PNGITFLGLLSACAHAGFWNEGLAYFDSMSKD-YHIEPEVEHYGCLVDILGRAGRLSQAL 408

Query: 280 KVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
            V ++MP+K +   W S+++          A+     ++   L+PDD     +L   +NI
Sbjct: 409 DVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLE--ELEPDDTGNYVLL---SNI 463

Query: 339 GWLELGKW 346
            + +L KW
Sbjct: 464 -YADLAKW 470


>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61800 [Vitis vinifera]
          Length = 576

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 188/513 (36%), Positives = 286/513 (55%), Gaps = 50/513 (9%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL-----SNVYVFNTLMRLYAVCGLIKA 170
           NT     V++ C   +SL+   QVHA+++ T LL     S++ + N L    A+     A
Sbjct: 14  NTSEAITVIRQC---KSLKQLHQVHAHTITTGLLWGLHHSSLLLTNILTAFTALLPTTNA 70

Query: 171 V---------HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221
                     + L  F + P        + T+I+A+  +  P  A++ F  M + ++ PD
Sbjct: 71  SPTTPAALTGYALSVFNRIPNPST--FGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPD 128

Query: 222 GMILVIVLSACSKLGDLSLG--------------------IKIHRYITDNH-------FN 254
                  L ACS L  LSL                       IH Y  + H       FN
Sbjct: 129 THTFPFCLKACSLLPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFN 188

Query: 255 LSP--DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF-KEALD 311
            +   DV  +NALI  ++K G+   AR++FD+MP+++ VSW +++AG    G    +A+ 
Sbjct: 189 ETSLKDVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQ 248

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           +F RM    ++PD+  LV  L++CA +G LE GK +H Y+ +N I  + F+   LVD+YA
Sbjct: 249 LFNRMLISTVRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYA 308

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           KCG I+ A  +F S   ++++++ A++VGL +HG+   +L  FS M + GI+PD V+F+G
Sbjct: 309 KCGCIETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLG 368

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           +L  C HAGLV E    F +M  VY +  + +HYGCM DL GRAGLIREA+++I+ MP+ 
Sbjct: 369 ILVGCGHAGLVCEARNFFQEMEVVYRVPRELKHYGCMADLLGRAGLIREAMEMIERMPMG 428

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
            D FVWG +LG C+IH  VE+AE   EN++   PE DG Y +M +IY++  RW++  ++R
Sbjct: 429 GDVFVWGGVLGGCRIHGNVEIAEKAAENVMALNPEDDGVYSIMADIYANAGRWEDVARIR 488

Query: 552 KKMKERKVKKTPGCSLVEV-YGEFYEFRKGDKS 583
           + M  R+VKK PGCSLV++  G F+ F  G  S
Sbjct: 489 RLMHSRQVKKNPGCSLVQLNNGVFHGFVAGSAS 521



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 128/472 (27%), Positives = 216/472 (45%), Gaps = 64/472 (13%)

Query: 10  GSRYNDI-NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKII 65
           GS  N I NT + ++++ Q       KS+ QL Q HA  I TG      H + +L + + 
Sbjct: 6   GSDGNTIVNTSEAITVIRQC------KSLKQLHQVHAHTITTGLLWGLHHSSLLLTNILT 59

Query: 66  SLSRGNEIENLS-----------------LQNPQVYLYNFIIQCLSN-ANPLEAIALYRE 107
           + +      N S                 + NP  + YN +I+  +  ++PL A+ ++  
Sbjct: 60  AFTALLPTTNASPTTPAALTGYALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIFVR 119

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           M    + P+T+T P+ LKAC    +L + Q +H+ + K    ++++V NTL+ +Y+V   
Sbjct: 120 MRRLSVPPDTHTFPFCLKACSLLPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKH 179

Query: 168 IKAVHKLFH-----------------------------FRQHPQAQRDLVSWTTLIQAYV 198
           +    ++F+                             F + P   RD VSW TL+  Y 
Sbjct: 180 LHHACQVFNETSLKDVVSYNALIGGFIKVGDTDRARRLFDKMP--IRDAVSWGTLLAGYA 237

Query: 199 KM-DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           +  D   +AI  F  M  + +RPD + LV  LSAC++LG+L  G  IH YI  N   +  
Sbjct: 238 QSGDLCMDAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPI-- 295

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           + F+   L+D+Y KCG I +AR++F+  P KN+ +WN+++ GL   G+   +L  F RM 
Sbjct: 296 NAFLSTGLVDLYAKCGCIETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMI 355

Query: 318 GLGLKPDDFTLVCVLNSCANIGWL-ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
             G+KPD  + + +L  C + G + E   +         +  +      + D+  + G I
Sbjct: 356 EAGIKPDGVSFLGILVGCGHAGLVCEARNFFQEMEVVYRVPRELKHYGCMADLLGRAGLI 415

Query: 377 DQAFGVFRSMKC-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427
            +A  +   M    DV+ +  ++ G  IHG    A      +  +  E D V
Sbjct: 416 REAMEMIERMPMGGDVFVWGGVLGGCRIHGNVEIAEKAAENVMALNPEDDGV 467



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 116/298 (38%), Gaps = 50/298 (16%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           ++AI L+  MLI  + P+   L   L AC Q   L  G+ +H Y  +  +  N ++   L
Sbjct: 244 MDAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGL 303

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + LYA CG I+   ++F         ++L +W  L+           ++  F  M +A +
Sbjct: 304 VDLYAKCGCIETAREIF----ESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGI 359

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
           +PDG+  + +L  C   G                                 L C     A
Sbjct: 360 KPDGVSFLGILVGCGHAG---------------------------------LVC----EA 382

Query: 279 RKVFDEMPV-----KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
           R  F EM V     + +  +  M   L   G  +EA+++  RM    +  D F    VL 
Sbjct: 383 RNFFQEMEVVYRVPRELKHYGCMADLLGRAGLIREAMEMIERMP---MGGDVFVWGGVLG 439

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
            C   G +E+ +     +   +   DG + + + D+YA  GR +    + R M  R V
Sbjct: 440 GCRIHGNVEIAEKAAENVMALNPEDDG-VYSIMADIYANAGRWEDVARIRRLMHSRQV 496


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 198/535 (37%), Positives = 295/535 (55%), Gaps = 58/535 (10%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL------IK 169
           +T  +  VL  C     LR   Q+HA  +KT LL++ +   T+ RL A C L      + 
Sbjct: 5   STNPVVSVLDKCKSLCELR---QIHAQMIKTNLLNHQF---TVSRLIAFCSLSGVSGGLD 58

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI-- 227
               +F   QHP +      +  LI+ +     P E+++ +  M        G+   I  
Sbjct: 59  YASSVFSRIQHPNS----FIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPS 114

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL AC KL     G ++H  +   H    P  F+ N+++ MY+  G I  AR+VFD MP 
Sbjct: 115 VLKACGKLLAFDEGRQVHGQVLKTHLWFDP--FVGNSMVRMYIDFGEIELARRVFDRMPN 172

Query: 288 KNVVSWNSMIAGLTHRGQFK-------------------------------EALDIFRRM 316
           ++VVSWNSMIAG    G+ +                               +ALD+FR M
Sbjct: 173 RDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREM 232

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN-TDGFIGNALVDMYAKCGR 375
             LGL+PD   +V VL++ A++G++E GKW+H Y+  N I  + GFIG+AL+DMY+KCG 
Sbjct: 233 LSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGY 292

Query: 376 IDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           I+ A+ VFRS+  R ++  + +MI GLAIHG A +ALDIF EM ++ IEP+E+TF+G+LS
Sbjct: 293 IENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLS 352

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
            CSH GLVEEG  +F  M   Y + P+ +HYGCM+DLFGRAG + +AL +I++MP   D 
Sbjct: 353 TCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADL 412

Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
             W A+L A   H  +E+ +      +   P+   +Y+L++NIY+   RW +  K+R  M
Sbjct: 413 LAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMM 472

Query: 555 KERKVKKTPGCSLVEVYGEFYEFRKG---DKSHPKTLEIYKLLDEIMHQSKNHGY 606
           ++R VKK  GCS + V G+ +EF  G   D S+    ++   + E++ + K  GY
Sbjct: 473 RQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYSG--QVLAKIAEVVSRLKLQGY 525



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 221/415 (53%), Gaps = 41/415 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQ----ILYDKIISLSRGNEIENL---SLQNPQV 83
           L+  KS+ +L+Q HA +IKT    HQ      I +  +  +S G +  +     +Q+P  
Sbjct: 13  LDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNS 72

Query: 84  YLYNFIIQCLSN-ANPLEAIALYREML--IKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           +++  +I+  S+ +NP+E++ LY  ML  +       +++P VLKAC +  +   G+QVH
Sbjct: 73  FIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVH 132

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQH-------------------- 180
              +KT L  + +V N+++R+Y   G I+   ++F    +                    
Sbjct: 133 GQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIE 192

Query: 181 -------PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
                    + +D+V+WT++I AYV+   P +A+  F +M    LRPDG  +V VLSA +
Sbjct: 193 LAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIA 252

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVS 292
            LG +  G  +H Y++ N   LS   FI +ALIDMY KCG I +A  VF  +   +N+  
Sbjct: 253 DLGFVEEGKWLHAYVSMNKIELSSG-FIGSALIDMYSKCGYIENAYHVFRSISHRRNIGD 311

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK-WVHTYL 351
           WNSMI+GL   G  +EALDIF  M+ + ++P++ T + +L++C++ G +E G+ +  +  
Sbjct: 312 WNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMH 371

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
           +K  I         ++D++ + GR++ A GV ++M    D+ ++ A++     HG
Sbjct: 372 EKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHG 426



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 128/258 (49%), Gaps = 16/258 (6%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY-SMKTALLSN 151
           + N  P++A+ L+REML  GL P+   +  VL A      +  G+ +HAY SM    LS+
Sbjct: 217 VQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSS 276

Query: 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211
            ++ + L+ +Y+ CG I+  + +F    H   +R++  W ++I          EA+  F 
Sbjct: 277 GFIGSALIDMYSKCGYIENAYHVFRSISH---RRNIGDWNSMISGLAIHGLAREALDIFV 333

Query: 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH--FNLSPDVFIHNALIDMY 269
           +M + ++ P+ +  + +LS CS  G +  G     Y    H  + + P +  +  +ID++
Sbjct: 334 EMERMDIEPNEITFLGLLSTCSHGGLVEEG---QFYFESMHEKYKIVPRIQHYGCMIDLF 390

Query: 270 LKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
            + G +  A  V   MP + ++++W ++++     G  +  +     ++ + L PDD + 
Sbjct: 391 GRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIE--IGKSAALRAIELAPDDSSS 448

Query: 329 VCVLNSCANIGWLELGKW 346
             +L   +NI + + G+W
Sbjct: 449 YVLL---SNI-YAKAGRW 462


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 176/484 (36%), Positives = 283/484 (58%), Gaps = 6/484 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK C + + L  G+  HA  +   L +++   N L+ +Y+ CG +    ++F       
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFD----EM 125

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
             R LVSW T+I +  +     EA+     M +         +  VL AC+    LS   
Sbjct: 126 PSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQ 185

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            +H +      +L  +VF+  AL+D+Y KCG +  A  VF+ MP ++VV+W+SM AG   
Sbjct: 186 LLHAFAIKAAMDL--NVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQ 243

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
              +++AL +FR+    GLK D F +  V+ +CA +  +  GK V+  L K+   ++ F+
Sbjct: 244 NEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFV 303

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
            ++L+DMYAKCG I++++ VFR ++ R+V  + AMI GL+ H ++ + + +F +M Q+G+
Sbjct: 304 ASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGL 363

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
            P++VTFV VLSAC H GLV++G K+F  M++ ++L P   HY CMVD   RAG I EA 
Sbjct: 364 SPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAY 423

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
           DLI  +P    A +WG+LL +C+ H  +ELAE+  + L   EP   G Y+L++N+Y++  
Sbjct: 424 DLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANG 483

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           +W E  K+RK +KE  VKK  G S +E+  + + F  G+++HPK +EIY  L+E+M + +
Sbjct: 484 KWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQ 543

Query: 603 NHGY 606
             GY
Sbjct: 544 KLGY 547



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 169/297 (56%), Gaps = 8/297 (2%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I  L+ N    EA+ L  +M  +G   + +T+  VL AC    +L   Q +HA+++
Sbjct: 133 WNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAI 192

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K A+  NV+V   L+ +YA CGL+K    +F         R +V+W+++   YV+ +   
Sbjct: 193 KAAMDLNVFVATALLDVYAKCGLMKDAVCVF----ESMPDRSVVTWSSMAAGYVQNEMYE 248

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           +A+  F    +  L+ D  ++  V+ AC+ L  +  G +++  ++ + F    ++F+ ++
Sbjct: 249 QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGF--CSNIFVASS 306

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LIDMY KCG I  + KVF ++  +NVV WN+MI+GL+   +  E + +F +MQ +GL P+
Sbjct: 307 LIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPN 366

Query: 325 DFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           D T V VL++C ++G ++ G K+      ++H+  + F  + +VD  ++ G+I +A+
Sbjct: 367 DVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAY 423



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 6/211 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+AL+R+    GL  + + +  V+ AC    ++  G+QV+A   K+   SN++V ++L+
Sbjct: 249 QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLI 308

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I+  +K+F        +R++V W  +I    +     E ++ F  M Q  L 
Sbjct: 309 DMYAKCGGIEESYKVF----RDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLS 364

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  V VLSAC  +G +  G K    +T  H +L+P+VF ++ ++D   + G I  A 
Sbjct: 365 PNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEH-HLAPNVFHYSCMVDTLSRAGQIFEAY 423

Query: 280 KVFDEMPVKNVVS-WNSMIAGLTHRGQFKEA 309
            +  ++P     S W S++A     G  + A
Sbjct: 424 DLISKLPFNASASMWGSLLASCRTHGNLELA 454


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 180/508 (35%), Positives = 288/508 (56%), Gaps = 29/508 (5%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L  C   ++ R GQ+VHA+ +KT  L +V++   L+ LY  C  +   H +F       
Sbjct: 249 ILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFD----EM 304

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL---------------------RPD 221
            +R++VSWT +I AY +  Y ++A+  FF   + +L                      P+
Sbjct: 305 PERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPN 364

Query: 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
                 VL++C+      LG +IH  I     N    VF+ ++L+DMY K G I  AR V
Sbjct: 365 EFTFATVLTSCTSSLGFILGRQIHSLIIK--LNYEDHVFVGSSLLDMYAKDGKIHEARTV 422

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           F+ +P ++VVS  ++I+G    G  +EAL++FRR+QG G+K +  T   VL + + +  L
Sbjct: 423 FECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAAL 482

Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
           +LGK VH ++ ++ I +   + N+L+DMY+KCG +  +  +F +M  R V S+ AM+VG 
Sbjct: 483 DLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGY 542

Query: 402 AIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR-VYNLQ 459
           + HG+  + L +F+ M  +  ++PD VT + VLS CSH GL ++G   F DMS     ++
Sbjct: 543 SKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVE 602

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P+ EHYGC+VDL GR+G + EA + IK MP  P A +WG+LLGAC++H+ V++ E   + 
Sbjct: 603 PKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQ 662

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L+  EP   G Y++++N+Y+S  RW++   LR  M ++ V K PG S +E+    + F  
Sbjct: 663 LLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHA 722

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            D+SHP+  EI   + E+    K  GY+
Sbjct: 723 SDRSHPRREEICMKVKELSTSFKEVGYV 750



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 152/289 (52%), Gaps = 13/289 (4%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           PN +T   VL +C  S    +G+Q+H+  +K     +V+V ++L+ +YA  G I     +
Sbjct: 363 PNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTV 422

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F        +RD+VS T +I  Y ++    EA+  F  +    ++ + +    VL+A S 
Sbjct: 423 FEC----LPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSG 478

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           L  L LG ++H ++  +   +   V + N+LIDMY KCGN+  +R++FD M  + V+SWN
Sbjct: 479 LAALDLGKQVHNHVLRS--EIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWN 536

Query: 295 SMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           +M+ G +  G+ +E L +F  M +   +KPD  T++ VL+ C++ G  + G  +   +  
Sbjct: 537 AMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSS 596

Query: 354 NHINTDGFIGN--ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
             I  +  + +   +VD+  + GR+++AF   + M     +  TA I G
Sbjct: 597 GKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMP----FEPTAAIWG 641



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 100/203 (49%), Gaps = 8/203 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+R +  +G+  N  T   VL A     +L +G+QVH + +++ + S V + N+L+
Sbjct: 449 EALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLI 508

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC--QAN 217
            +Y+ CG +    ++F        +R ++SW  ++  Y K     E +L  F +   +  
Sbjct: 509 DMYSKCGNLTYSRRIF----DTMYERTVISWNAMLVGYSKHGEGRE-VLKLFTLMREETK 563

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           ++PD + ++ VLS CS  G    G+ I   ++     + P +  +  ++D+  + G +  
Sbjct: 564 VKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEE 623

Query: 278 ARKVFDEMPVKNVVS-WNSMIAG 299
           A +   +MP +   + W S++  
Sbjct: 624 AFEFIKKMPFEPTAAIWGSLLGA 646


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 173/509 (33%), Positives = 287/509 (56%), Gaps = 8/509 (1%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVG 136
           + +  V  +N +I C   +   E    Y  M+ + G  P++ T+   + +C +   L  G
Sbjct: 167 MPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRG 226

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +++H   + +    + +V   L+ +Y  CG ++   ++F   Q P   + +V+W ++I  
Sbjct: 227 REIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFE--QMPN--KTVVAWNSMING 282

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y         I  F  M    ++P    L   L ACS+   L  G  +H YI  N   + 
Sbjct: 283 YGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNR--IQ 340

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           PD+F++++L+D+Y KCG + SA  +F  MP    VSWN MI+G    G+  +AL +F  M
Sbjct: 341 PDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEM 400

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
               ++PD  T   VL +C+ +  LE G+ +H  + + ++  +  +  AL+DMYAKCG +
Sbjct: 401 SKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAV 460

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           ++AFGVF+ +  RD+ S+T+MI     HG+ ++AL++F+EM Q  ++PD VTF+ +LSAC
Sbjct: 461 EEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSAC 520

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF- 495
           SHAGLV++G  HF  M  VY + P+ EHY C++ L GRAG + EA ++++S P + D F 
Sbjct: 521 SHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQ 580

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           +   L  AC++H  ++L   + ENL+  +P+    YI+++N+Y+S  +W E   +R KMK
Sbjct: 581 LLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMK 640

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
           +  +KK PGCS +E+  +   F   D SH
Sbjct: 641 DLGLKKNPGCSWIEINEKIVPFFVEDNSH 669



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/424 (34%), Positives = 234/424 (55%), Gaps = 12/424 (2%)

Query: 100 EAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           EA+ L+ +++    L P++YT P VLKAC   + + +GQ +H   +K  L+ ++ V ++L
Sbjct: 88  EALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSL 147

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +YA C   +   KLF         +D+  W T+I  Y +     EA+  F  M +   
Sbjct: 148 VGMYAKCNEFECAVKLF----DEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGF 203

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            PD + +   +S+C++L DL  G +IH+ + ++ F +  D F+  AL+DMY KCG +  A
Sbjct: 204 EPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRM--DSFVSAALVDMYGKCGQLEMA 261

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
            +VF++MP K VV+WNSMI G   +G     + +F+RM   G+KP   TL   L +C+  
Sbjct: 262 IEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQS 321

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
             L  GK+VH Y+ +N I  D F+ ++L+D+Y KCG+++ A  +F+ M      S+  MI
Sbjct: 322 AQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMI 381

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYN 457
            G    GK + AL +F EMS+  +EPD +TF  VL+ACS    +E+G + H L + R  N
Sbjct: 382 SGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVER--N 439

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV-ELAEIV 516
           L       G ++D++ + G + EA  + K +P   D   W +++ A   H +V E  E+ 
Sbjct: 440 LGNNEVVMGALLDMYAKCGAVEEAFGVFKCLP-ERDLVSWTSMITAYGSHGRVYEALELF 498

Query: 517 MENL 520
            E L
Sbjct: 499 AEML 502



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 142/516 (27%), Positives = 231/516 (44%), Gaps = 56/516 (10%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L+A   S+SL+ G+ +H   +   L ++VYV   L+ LY  C L      +F   ++P 
Sbjct: 9   LLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENP- 67

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFD--MCQANLRPDGMILVIVLSACSKLGDLSL 240
              ++     L+  Y +     EA L  FD  MC   L+PD      VL AC  L  + L
Sbjct: 68  --FEISLCNGLMAGYTRNCMYDEA-LGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVL 124

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G  IH  +      L  D+ + ++L+ MY KC     A K+FDEMP K+V  WN++I+  
Sbjct: 125 GQMIHTCLVKE--GLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCY 182

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
              G+F+EAL  F  M+  G +PD  T+   ++SCA +  L+ G+ +H  L  +    D 
Sbjct: 183 YQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDS 242

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
           F+  ALVDMY KCG+++ A  VF  M  + V ++ +MI G    G     + +F  M   
Sbjct: 243 FVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSE 302

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEG----------------------------CKHFLDM 452
           G++P   T    L ACS +  + EG                            C      
Sbjct: 303 GVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESA 362

Query: 453 SRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSMP---LVPDAFVWGALLGACKIH 507
             ++ L P+T    +  M+  +   G + +AL L   M    + PDA  + ++L AC   
Sbjct: 363 ETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQL 422

Query: 508 AKVELAEIVMENLVRFEPEGDGAYIL--MTNIYSSKNRWKEALKLRKKMKERKVKKTPGC 565
           A +E    +  NL+     G+   ++  + ++Y+     +EA  + K + ER +      
Sbjct: 423 AALEKGREI-HNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDL--VSWT 479

Query: 566 SLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQS 601
           S++  YG          SH +  E  +L  E++  +
Sbjct: 480 SMITAYG----------SHGRVYEALELFAEMLQSN 505


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 181/505 (35%), Positives = 280/505 (55%), Gaps = 24/505 (4%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL----------- 167
           +LP  LK+C       +G  +HA ++++   ++ +  N L+ LY  C L           
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLY--CKLPAPPSHSPEMD 117

Query: 168 -----IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
                +++V K+F        ++D+VSW TL+    +     EA+    +M +   +PD 
Sbjct: 118 GSAVVLESVRKVFD----EMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDS 173

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
             L  VL   ++  D+  G+++H + T N F+   DVF+ ++LIDMY  C     + KVF
Sbjct: 174 FTLSSVLPIFAEGADVRRGMELHGFATRNGFH--DDVFVGSSLIDMYANCTRTDYSVKVF 231

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342
           D +PV++ + WNSM+AG    G   EAL +FRRM   G+KP   T   ++ +C N+  L 
Sbjct: 232 DNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLL 291

Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402
           LGK +H Y+ +   + + FI ++L+DMY KCG +  A  +F  ++  D+ S+TAMI+G A
Sbjct: 292 LGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHA 351

Query: 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462
           +HG A +AL +F  M    ++P+ +TF+ VL+ACSHAGLV++G K+F  MS  Y + P  
Sbjct: 352 LHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSL 411

Query: 463 EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
           EH+  + D  GR G + EA + I  M + P A VW  LL ACK+H    LAE V + +  
Sbjct: 412 EHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFD 471

Query: 523 FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDK 582
            EP   G++I+++N YSS  RW EA  LRK M+++ ++K P CS +EV  + + F   DK
Sbjct: 472 LEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDK 531

Query: 583 SHPKTLEIYKLLDEIMHQSKNHGYI 607
           SHP    I   L+    Q    GY+
Sbjct: 532 SHPWYERIIDALNVFSEQMVRQGYV 556



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 163/320 (50%), Gaps = 8/320 (2%)

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
             ++ C  +    EA+ L REM   G  P+++TL  VL    +   +R G ++H ++ + 
Sbjct: 143 TLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRN 202

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
               +V+V ++L+ +YA C       K+F         RD + W +++    +     EA
Sbjct: 203 GFHDDVFVGSSLIDMYANCTRTDYSVKVF----DNLPVRDAILWNSMLAGCAQNGSVDEA 258

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F  M  + ++P  +    ++ AC  L  L LG ++H Y+    F+   +VFI ++LI
Sbjct: 259 LGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFD--GNVFISSSLI 316

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           DMY KCGN+  AR++FD +   ++VSW +MI G    G  +EAL +F RM+   LKP+  
Sbjct: 317 DMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHI 376

Query: 327 TLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
           T + VL +C++ G ++ G K+ ++  D   I        AL D   + G++++A+     
Sbjct: 377 TFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISG 436

Query: 386 MKCRDVYS-YTAMIVGLAIH 404
           MK +   S ++ ++    +H
Sbjct: 437 MKIKPTASVWSTLLRACKVH 456



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 30/245 (12%)

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC---------VLNSCANIGWLE 342
           SW   I     +G F  A+ +F RM+       D    C          L SCA +G   
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRA-----SDPAAACSSVLTSLPGALKSCAALGLRA 75

Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR--------------IDQAFGVFRSMKC 388
           LG  +H    ++    D F  NAL+++Y K                 ++    VF  M  
Sbjct: 76  LGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPE 135

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           +DV S+  +++G A  G+  +AL +  EM + G +PD  T   VL   +    V  G + 
Sbjct: 136 KDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMEL 195

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
               +R             ++D++        ++ +  ++P V DA +W ++L  C  + 
Sbjct: 196 HGFATR-NGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLP-VRDAILWNSMLAGCAQNG 253

Query: 509 KVELA 513
            V+ A
Sbjct: 254 SVDEA 258


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 191/516 (37%), Positives = 293/516 (56%), Gaps = 9/516 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTY 118
           +Y K   L +  E   LSL+   + +++  +  L  A  P EA+++++EM  +GL P+  
Sbjct: 372 MYAKCGELKKAKEF-FLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKT 430

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
            L  ++ AC +  S R+G+ +H Y +K  + S++ V  TL+ +Y  C        LF+ R
Sbjct: 431 ILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFN-R 489

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
            H    +D+V+W TLI  + K   P  A+  F  +  + ++PD   +V +LSAC+ L DL
Sbjct: 490 MH---YKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDL 546

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD-EMPVKNVVSWNSMI 297
            LGI  H  I  N   +  ++ +  ALIDMY KCG++ +A  +F     VK+ VSWN MI
Sbjct: 547 YLGICFHGNIIKN--GIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMI 604

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
           AG  H G   EA+  F +M+   ++P+  T V +L + + +  L      H  + +    
Sbjct: 605 AGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFI 664

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
           +   IGN+L+DMYAK G++  +   F  M+ +   S+ AM+ G A+HG+   AL +FS M
Sbjct: 665 SSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLM 724

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
            +  +  D V+++ VLSAC HAGL++EG   F  M+  +NL+P  EHY CMVDL G AGL
Sbjct: 725 QETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGL 784

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
             E L LI  MP  PDA VWGALLGACK+H+ V+L EI + +L++ EP     YI++++I
Sbjct: 785 FDEVLCLIDKMPTEPDAQVWGALLGACKMHSNVKLGEIALHHLLKLEPRNAVHYIVLSDI 844

Query: 538 YSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
           Y+   RW +A + R  M +  +KK PG S V  + +
Sbjct: 845 YAQCGRWIDARRTRSNMTDHGLKKNPGYSWVGAHKQ 880



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 217/467 (46%), Gaps = 47/467 (10%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           S+ NP + L+N +I+  S  +   EAI  Y+ M   GL P+ YT  +VLKAC  +     
Sbjct: 86  SITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHE 145

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G  +H       L  +V++   L+ +Y   G +    K+F         +D+ SW  +I 
Sbjct: 146 GVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVF----DKMPGKDVASWNAMIS 201

Query: 196 AYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
              +   P EA+  F  M  +  + PD + ++ +  A S+L D+     IH Y+      
Sbjct: 202 GLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYV------ 255

Query: 255 LSPDVF--IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           +   VF  + N+LIDMY KCG +  A ++FD+M VK+ +SW +M+AG  H G + E L +
Sbjct: 256 VRRCVFGVVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQL 315

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
              M+   +K +  ++V  + +      LE GK VH Y  +  + +D  +   +V MYAK
Sbjct: 316 LDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAK 375

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           CG + +A   F S++ RD+  ++A +  L   G   +AL IF EM   G++PD+     +
Sbjct: 376 CGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSL 435

Query: 433 LSACSHAGLVEEG----------------------------CKHFLDMSRVYNLQPQTE- 463
           +SAC+       G                            CK F+    ++N     + 
Sbjct: 436 VSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDV 495

Query: 464 -HYGCMVDLFGRAGLIREALDLIKSMPLV---PDAFVWGALLGACKI 506
             +  +++ F + G  R AL++   + L    PD+    +LL AC +
Sbjct: 496 VAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACAL 542



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 211/431 (48%), Gaps = 33/431 (7%)

Query: 86  YNFIIQCLS-NANPLEAIALYREM-LIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           +N +I  LS ++NP EA+ +++ M + +G+ P++ ++  +  A  + + +   + +H Y 
Sbjct: 196 WNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYV 255

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           ++  +     V N+L+ +Y+ CG +K  H++F         +D +SW T++  YV     
Sbjct: 256 VRRCVFG--VVSNSLIDMYSKCGEVKLAHQIFD----QMWVKDDISWATMMAGYVHHGCY 309

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
            E +    +M + +++ + + +V  + A ++  DL  G ++H Y       ++ D+ +  
Sbjct: 310 FEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYAL--QLGMTSDIVVAT 367

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
            ++ MY KCG +  A++ F  +  +++V W++ ++ L   G   EAL IF+ MQ  GLKP
Sbjct: 368 PIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKP 427

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D   L  ++++CA I    LGK +H Y+ K  + +D  +   LV MY +C     A  +F
Sbjct: 428 DKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLF 487

Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS------ 437
             M  +DV ++  +I G    G    AL++F  +   G++PD  T V +LSAC+      
Sbjct: 488 NRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLY 547

Query: 438 -----HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
                H  +++ G            ++ +      ++D++ + G +  A +L      V 
Sbjct: 548 LGICFHGNIIKNG------------IESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVK 595

Query: 493 DAFVWGALLGA 503
           D   W  ++  
Sbjct: 596 DEVSWNVMIAG 606


>gi|147797310|emb|CAN76007.1| hypothetical protein VITISV_013341 [Vitis vinifera]
          Length = 666

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 190/511 (37%), Positives = 292/511 (57%), Gaps = 18/511 (3%)

Query: 95  NANPLEAIALYREM------LIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA- 147
           N+ P +A+ +++EM      +   L P ++T+  V  AC Q + + +G+Q+H Y MK + 
Sbjct: 151 NSRPKDALFVFKEMRGECDEMGSPLSPMSHTITSVFSACGQLRDVILGEQIHGYVMKISS 210

Query: 148 -LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            + ++ +V + ++ +Y  CG      +L  F  +    + +V WT LI +YV  + P  A
Sbjct: 211 YVENDAFVGSVVVDMYGKCGF----EELARFVFYSIVDKCVVVWTALIASYVCNECPCPA 266

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           I  F +M    + P+ + L  ++SACS++ DL LG +IH +IT      +PDVFI  +LI
Sbjct: 267 IEVFREMIYEGMEPNCVTLSSLISACSQIPDLMLGKEIHGFITRRRAATTPDVFISTSLI 326

Query: 267 DMYLKCGNIPSARKVFDE---MPVKNVVS-WNSMIAGLTHRGQFKEALDIFRRM-QGLGL 321
           DMY KC  +    ++F++    P  N  + WN+ IAG        +A D+FR +  G G+
Sbjct: 327 DMYGKCNYMVYGHRIFEKDKTYPRCNTTALWNATIAGYMENNFVSDAWDVFRSITHGEGI 386

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
            P+  T+  VL  CA    L  GK +H Y  +N ++ + F+ N L+DMY+KCG++  A  
Sbjct: 387 NPNTVTMSIVLPLCARSSQLLSGKEIHCYALRNGLDQEIFVSNGLIDMYSKCGKLKLAEN 446

Query: 382 VF-RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            F R M  ++  S+T+MI G  IHG    A+ +F  M +  ++PD +TFV ++SACSHAG
Sbjct: 447 QFNRMMNEKNRISWTSMIDGHGIHGDGEGAIRVFESMVREEVKPDHITFVALISACSHAG 506

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           L+E+G ++F +MSR Y + P  E+YG +VDL  RAG  +EA DLI+ MP+ P A VWGAL
Sbjct: 507 LLEQGLRYFEEMSREYGIVPVEENYGTVVDLLARAGRFKEARDLIERMPIKPGANVWGAL 566

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           LGAC+IH  V+ AE+    L + EP+  G   L+ +IY    R + A  LR +M+E  ++
Sbjct: 567 LGACRIHGNVKEAELAAHCLQKLEPKDSGFQKLLASIYLEAGRRENAEDLRSQMREMGME 626

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           K  G S +E   E YE    DK  P T E +
Sbjct: 627 KRQGFSWLETKEEIYESIDSDKHIPDTTETW 657



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 218/474 (45%), Gaps = 46/474 (9%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQS-LRVGQQVHAYSMKTALL-SNVYVFNT 157
           E  A Y ++  +G  PN++T   +LK    SQS L   Q +HA + K   + S+ +V N 
Sbjct: 19  ELTAFYHQIRKQGFEPNSFTFSSLLKCLSSSQSPLLHAQPLHADAAKRGFVSSDPFVTND 78

Query: 158 LMRLYAVCGLIKAVHKLF-----------------HFRQ-HPQAQRDL------------ 187
           L+ +Y+ CG  ++  K+F                 +FR+ H  A R+L            
Sbjct: 79  LLTVYSRCGSPQSARKMFDEIPVPGPFCWNTMISCYFRESHCGAARELFDRMREAHLAND 138

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDM---CQ---ANLRPDGMILVIVLSACSKLGDLSLG 241
           V+W+ +I  Y +   P +A+  F +M   C    + L P    +  V SAC +L D+ LG
Sbjct: 139 VTWSAVIAGYAQNSRPKDALFVFKEMRGECDEMGSPLSPMSHTITSVFSACGQLRDVILG 198

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            +IH Y+      +  D F+ + ++DMY KCG    AR VF  +  K VV W ++IA   
Sbjct: 199 EQIHGYVMKISSYVENDAFVGSVVVDMYGKCGFEELARFVFYSIVDKCVVVWTALIASYV 258

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT--D 359
                  A+++FR M   G++P+  TL  ++++C+ I  L LGK +H ++ +    T  D
Sbjct: 259 CNECPCPAIEVFREMIYEGMEPNCVTLSSLISACSQIPDLMLGKEIHGFITRRRAATTPD 318

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMK----CRDVYSYTAMIVGLAIHGKAWKALDIFS 415
            FI  +L+DMY KC  +     +F   K    C     + A I G   +     A D+F 
Sbjct: 319 VFISTSLIDMYGKCNYMVYGHRIFEKDKTYPRCNTTALWNATIAGYMENNFVSDAWDVFR 378

Query: 416 EMSQ-VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            ++   GI P+ VT   VL  C+ +  +  G K     +    L  +      ++D++ +
Sbjct: 379 SITHGEGINPNTVTMSIVLPLCARSSQLLSG-KEIHCYALRNGLDQEIFVSNGLIDMYSK 437

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
            G ++ A +    M    +   W +++    IH   E A  V E++VR E + D
Sbjct: 438 CGKLKLAENQFNRMMNEKNRISWTSMIDGHGIHGDGEGAIRVFESMVREEVKPD 491



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 188/400 (47%), Gaps = 33/400 (8%)

Query: 36  SVGQLK------QFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFI 89
           + GQL+      Q H +++K  S       +   ++ +      E L+    +   Y+ +
Sbjct: 188 ACGQLRDVILGEQIHGYVMKISSYVENDAFVGSVVVDMYGKCGFEELA----RFVFYSIV 243

Query: 90  IQCL-----------SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
            +C+            N  P  AI ++REM+ +G+ PN  TL  ++ AC Q   L +G++
Sbjct: 244 DKCVVVWTALIASYVCNECPCPAIEVFREMIYEGMEPNCVTLSSLISACSQIPDLMLGKE 303

Query: 139 VHAY--SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF-RQHPQAQRDLVSWTTLIQ 195
           +H +    + A   +V++  +L+ +Y  C  +   H++F   + +P+     + W   I 
Sbjct: 304 IHGFITRRRAATTPDVFISTSLIDMYGKCNYMVYGHRIFEKDKTYPRCNTTAL-WNATIA 362

Query: 196 AYVKMDYPTEAILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
            Y++ ++ ++A   F  +     + P+ + + IVL  C++   L  G +IH Y   N   
Sbjct: 363 GYMENNFVSDAWDVFRSITHGEGINPNTVTMSIVLPLCARSSQLLSGKEIHCYALRN--G 420

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDE-MPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
           L  ++F+ N LIDMY KCG +  A   F+  M  KN +SW SMI G    G  + A+ +F
Sbjct: 421 LDQEIFVSNGLIDMYSKCGKLKLAENQFNRMMNEKNRISWTSMIDGHGIHGDGEGAIRVF 480

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH--INTDGFIGNALVDMYA 371
             M    +KPD  T V ++++C++ G LE G      + + +  +  +   G  +VD+ A
Sbjct: 481 ESMVREEVKPDHITFVALISACSHAGLLEQGLRYFEEMSREYGIVPVEENYGT-VVDLLA 539

Query: 372 KCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKA 410
           + GR  +A  +   M  +     + A++    IHG   +A
Sbjct: 540 RAGRFKEARDLIERMPIKPGANVWGALLGACRIHGNVKEA 579


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 177/471 (37%), Positives = 280/471 (59%), Gaps = 6/471 (1%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +QVHA    T ++ ++ V N L+ + A    +   H LF+       +RD VSW+ +I  
Sbjct: 20  KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFN----KMEERDPVSWSVMIGG 75

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           +VK         +F ++ +A  +PD   L  V+ AC     L +G  IH  +  N  +L 
Sbjct: 76  FVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHL- 134

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D F+ + L+DMY KCG I +A+++FD MP K++V+   MIAG    G+  E+  +F +M
Sbjct: 135 -DNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQM 193

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +  G  PD   +V ++N+CA +G +   + VH Y+     + D  +G A++DMYAKCG I
Sbjct: 194 RRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSI 253

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           D +  +F  M+ ++V S++AMI     HG+  +AL++F  M   GI P+ +TF+ +L AC
Sbjct: 254 DSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYAC 313

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SHAGLV++G + F  MS  Y ++P  +HY CMVDL GRAG + +AL LI++M +  D  +
Sbjct: 314 SHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGI 373

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W A LGAC+IH +V+LAE   + L+  + +  G YIL++NIY++  RWK+  K+R  M +
Sbjct: 374 WCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAK 433

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           R++KK PG + +EV    Y F  GD SH ++ EIY++L  +  + ++ GY+
Sbjct: 434 RRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYV 484



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 205/381 (53%), Gaps = 21/381 (5%)

Query: 35  KSVGQLKQFHAFIIKTGSPQH---QTQILY------DKIISLSRGNEIENLSLQNPQVYL 85
           +++ Q+KQ HA +  TG         ++LY      D + +    N++E     +  V +
Sbjct: 14  RNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMI 73

Query: 86  YNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
             F+     N +       +RE++  G  P+ ++LP+V+KAC  +  L +G+ +H+  +K
Sbjct: 74  GGFV----KNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLK 129

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205
             L  + +V +TL+ +YA CG+I    +LF        ++DLV+ T +I  Y +   P E
Sbjct: 130 NGLHLDNFVCSTLVDMYAKCGMIDNAKQLF----DRMPKKDLVTRTVMIAGYAECGKPNE 185

Query: 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
           + + F  M +    PD + +V +++AC+KLG ++    +H Y+    ++L  DV +  A+
Sbjct: 186 SWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL--DVELGTAM 243

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           IDMY KCG+I S+R++FD M  KNV+SW++MI    + GQ +EAL++F  M   G+ P+ 
Sbjct: 244 IDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNR 303

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFR 384
            T + +L +C++ G ++ G  + + +  ++ +  D      +VD+  + GR+DQA  +  
Sbjct: 304 ITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIE 363

Query: 385 SMKC-RDVYSYTAMIVGLAIH 404
           +M+  +D   + A +    IH
Sbjct: 364 NMEVEKDEGIWCAFLGACRIH 384


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 173/495 (34%), Positives = 276/495 (55%), Gaps = 7/495 (1%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L P        + AC QS++L   +++HA+   +    + ++ N+L+ +Y  C  +    
Sbjct: 47  LAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDAR 106

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
            +F        ++D+VSWT+LI  Y + D P EAI     M +   +P+G     +L A 
Sbjct: 107 NVFD----QMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAA 162

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
               D   G +IH       ++   DV++ +AL+DMY +CG +  A  VFD++  KN VS
Sbjct: 163 GAYADSGTGRQIHALAVKCGWH--EDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS 220

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WN++I+G   +G  + AL  F  M   G +   FT   V +S A +G LE GKWVH ++ 
Sbjct: 221 WNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVI 280

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K+      F+GN L+DMYAK G +  A  VF  +  +D+ ++ +M+   A +G   +A+ 
Sbjct: 281 KSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVS 340

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
            F EM + G+  +++TF+ +L+ACSH GLV+EG K + +M + Y+L+P+ +HY  +V L 
Sbjct: 341 HFEEMRKSGVYLNQITFLCILTACSHGGLVKEG-KRYFEMMKEYDLEPEIDHYVTVVALL 399

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           GRAGL+  AL  I  MP+ P A VWGALL AC++H   ++ +   +++   +P+  G  +
Sbjct: 400 GRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPV 459

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           L+ NIY+S  +W  A ++R  MK   VKK P CS VE+    + F   D +HP+  EIYK
Sbjct: 460 LLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYK 519

Query: 593 LLDEIMHQSKNHGYI 607
           +  EI  + +  GY+
Sbjct: 520 MWGEISKKIRKEGYV 534



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 6/251 (2%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N  P+EAI L   ML     PN +T   +LKA         G+Q+HA ++K     +VYV
Sbjct: 130 NDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYV 189

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +YA CG +     +F         ++ VSW  LI  + +      A+++F +M 
Sbjct: 190 GSALLDMYARCGKMDMATAVF----DKLDSKNGVSWNALISGFARKGDGESALMTFAEML 245

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +            V S+ ++LG L  G  +H ++  +   L+   F+ N L+DMY K G+
Sbjct: 246 RNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLT--AFVGNTLLDMYAKSGS 303

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  ARKVFD +  K++V+WNSM+      G  KEA+  F  M+  G+  +  T +C+L +
Sbjct: 304 MIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTA 363

Query: 335 CANIGWLELGK 345
           C++ G ++ GK
Sbjct: 364 CSHGGLVKEGK 374


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 180/507 (35%), Positives = 283/507 (55%), Gaps = 11/507 (2%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+ +   M  +G+  ++ T   ++K C    ++R G++VH +          ++ N L+ 
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           +Y    L++    LF        +R++VSWTT+I AY        A+     M +  + P
Sbjct: 329 MYVKFNLLEEAQVLFD----KMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMP 384

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           +      VL AC +L DL    ++H +I      L  DVF+ +ALID+Y K G +  A K
Sbjct: 385 NMFTFSSVLRACERLYDLK---QLHSWIMK--VGLESDVFVRSALIDVYSKMGELLEALK 439

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           VF EM   + V WNS+IA         EAL +++ M+ +G   D  TL  VL +C ++  
Sbjct: 440 VFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSL 499

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           LELG+  H ++ K   + D  + NAL+DMY KCG ++ A  +F  M  +DV S++ MI G
Sbjct: 500 LELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAG 557

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
           LA +G + +AL++F  M   G +P+ +T +GVL ACSHAGLV EG  +F  M+ +Y + P
Sbjct: 558 LAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDP 617

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520
             EHYGCM+DL GRA  + + + LI  M   PD   W  LL AC+    V+LA    + +
Sbjct: 618 GREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEI 677

Query: 521 VRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG 580
           ++ +P+  GAY+L++NIY+   RW +  ++R+ MK+R ++K PGCS +EV  + + F  G
Sbjct: 678 LKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILG 737

Query: 581 DKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           DKSHP+  EI + L++ + +    GY+
Sbjct: 738 DKSHPQIDEINRQLNQFICRLAGAGYV 764



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 184/370 (49%), Gaps = 18/370 (4%)

Query: 36  SVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNEIENLSLQNPQ--VYLYNFIIQ 91
           +V + K+ H  I   G       T IL +  +  +   E + L  + P+  V  +  +I 
Sbjct: 300 AVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMIS 359

Query: 92  CLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
             SNA   + A+ L   M   G++PN +T   VL+AC +   L+   Q+H++ MK  L S
Sbjct: 360 AYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLK---QLHSWIMKVGLES 416

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           +V+V + L+ +Y+  G +    K+F          D V W ++I A+ +     EA+  +
Sbjct: 417 DVFVRSALIDVYSKMGELLEALKVF----REMMTGDSVVWNSIIAAFAQHSDGDEALHLY 472

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             M +     D   L  VL AC+ L  L LG + H ++         D+ ++NAL+DMY 
Sbjct: 473 KSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHV----LKFDQDLILNNALLDMYC 528

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KCG++  A+ +F+ M  K+V+SW++MIAGL   G   EAL++F  M+  G KP+  T++ 
Sbjct: 529 KCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILG 588

Query: 331 VLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
           VL +C++ G +  G +    ++  + I+        ++D+  +  ++D    +   M C 
Sbjct: 589 VLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCE 648

Query: 390 -DVYSYTAMI 398
            DV ++  ++
Sbjct: 649 PDVVTWRTLL 658



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 158/365 (43%), Gaps = 42/365 (11%)

Query: 28  SPRLESSKSVGQLKQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQ 82
           S  L + + +  LKQ H++I+K G       +     +Y K+  L    ++    +    
Sbjct: 390 SSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDS 449

Query: 83  VYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           V   + I     +++  EA+ LY+ M   G   +  TL  VL+AC     L +G+Q H +
Sbjct: 450 VVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVH 509

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +K     ++ + N L+ +Y  CG ++    +F    +  A++D++SW+T+I    +  +
Sbjct: 510 VLK--FDQDLILNNALLDMYCKCGSLEDAKFIF----NRMAKKDVISWSTMIAGLAQNGF 563

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             EA+  F  M     +P+ + ++ VL ACS  G ++ G    R + +N + + P    +
Sbjct: 564 SMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSM-NNLYGIDPGREHY 622

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
             ++D+  +   +    K+  EM  + +VV+W +++     R      L  +   + L L
Sbjct: 623 GCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVD--LATYAAKEILKL 680

Query: 322 KPDDFTLVCVL----------NSCANI---------------GWLELGKWVHTYL--DKN 354
            P D     +L          N  A +                W+E+ K +H ++  DK+
Sbjct: 681 DPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKS 740

Query: 355 HINTD 359
           H   D
Sbjct: 741 HPQID 745



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 100/213 (46%), Gaps = 17/213 (7%)

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
           +R     A+ +   M+  G+  D  T   ++  C   G +  GK VH ++  N  +   F
Sbjct: 262 YRRDLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTF 321

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           + N L++MY K   +++A  +F  M  R+V S+T MI   +      +A+ + + M + G
Sbjct: 322 LTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDG 381

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN------LQPQTEHYGCMVDLFGRA 475
           + P+  TF  VL A          C+   D+ ++++      L+        ++D++ + 
Sbjct: 382 VMPNMFTFSSVLRA----------CERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKM 431

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           G + EAL + + M +  D+ VW +++ A   H+
Sbjct: 432 GELLEALKVFREM-MTGDSVVWNSIIAAFAQHS 463


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 182/488 (37%), Positives = 286/488 (58%), Gaps = 9/488 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L++C  S+++R G+Q+HA  + +    +  +   L+ LYA CG +    ++F   + P 
Sbjct: 74  ILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFD--EMPN 131

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFD--MCQANLRPDGMILVIVLSACSKLGDLSL 240
            Q ++  W  LI+AY + D P EA +  +   +   +++PD      VL AC+ L DLS 
Sbjct: 132 -QGNVFLWNVLIRAYAR-DGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSA 189

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G ++H  +     N + DVF+   LIDMY KCG +  A  VF++  +++   WNSMIA  
Sbjct: 190 GREVHDRVMRT--NWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAAC 247

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
              G+  EAL + R M   G+ P   TLV  +++ A    L  G+ +H Y  +    +  
Sbjct: 248 GQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQD 307

Query: 361 FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQ 419
            +  +L+DMYAK G +  A  +F  +  R++ S+ AMI G  +HG A  A ++FS M S+
Sbjct: 308 KLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSE 367

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             + PD +TFVGVLSAC+H G+V+E  + F  M  VY+++P  +HY C+VD+ G +G  +
Sbjct: 368 AQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFK 427

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA D+IK M + PD+ +WGALL  CKIH  VELAE+ ++ L+  EPE  G Y+L++NIY+
Sbjct: 428 EASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYA 487

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
              +W+EA ++RK M  R +KK   CS +E+ G+F+ F  GD SHP++ +IY+ L+ +  
Sbjct: 488 ESGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEG 547

Query: 600 QSKNHGYI 607
                GY+
Sbjct: 548 LISQTGYV 555



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 181/381 (47%), Gaps = 16/381 (4%)

Query: 34  SKSVGQLKQFHAFIIKTGSPQHQ---TQI--LYDKIISLSRGNEIENLSLQNPQVYLYNF 88
           S++V   +Q HA ++ +G+       T++  LY     +S    + +       V+L+N 
Sbjct: 81  SRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNV 140

Query: 89  IIQCLSNANPLEA-IALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           +I+  +   P EA I LYR ML  G + P+ +T P VLKAC     L  G++VH   M+T
Sbjct: 141 LIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRT 200

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
              ++V+V   L+ +YA CG +     +F    +    RD   W ++I A  +   P EA
Sbjct: 201 NWATDVFVCTGLIDMYAKCGCMDEAWAVF----NDTTIRDAAVWNSMIAACGQNGRPAEA 256

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +    +M    + P    LV  +SA +    L  G ++H Y     F  S D  +  +L+
Sbjct: 257 LTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFG-SQDK-LKTSLL 314

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDD 325
           DMY K G +  A  +F+++  + ++SWN+MI G    G    A ++F RM+    + PD 
Sbjct: 315 DMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDH 374

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFR 384
            T V VL++C + G ++  K V   +   + I         LVD+    GR  +A  V +
Sbjct: 375 ITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIK 434

Query: 385 SMKCR-DVYSYTAMIVGLAIH 404
            M  + D   + A++ G  IH
Sbjct: 435 GMLVKPDSGIWGALLNGCKIH 455



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 151/367 (41%), Gaps = 79/367 (21%)

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           + I  C  N  P EA+ L R M  +G+ P   TL   + A   + +L  G+++H Y  + 
Sbjct: 242 SMIAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRR 301

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
              S   +  +L+ +YA  G +   H LF    H    R+L+SW  +I  +    +   A
Sbjct: 302 GFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLH----RELISWNAMICGFGMHGHADHA 357

Query: 207 ILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265
              F  M  +A + PD +  V VLSAC                  NH             
Sbjct: 358 FELFSRMRSEAQVMPDHITFVGVLSAC------------------NHG------------ 387

Query: 266 IDMYLKCGNIPSARKVFDEM----PVKNVVS-WNSMIAGLTHRGQFKEALDIFRRMQGLG 320
                  G +  A++VFD M     +K  V  +  ++  L H G+FKEA D+   ++G+ 
Sbjct: 388 -------GMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDV---IKGML 437

Query: 321 LKPDDFTLVCVLNSC---ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
           +KPD      +LN C    N+   EL   +   ++    +   ++   L ++YA+ G+ +
Sbjct: 438 VKPDSGIWGALLNGCKIHKNVELAELA--LQKLIELEPEDAGNYV--LLSNIYAESGKWE 493

Query: 378 QAFGVFRSMKCRDVYSYTA------------MIVGLAIHGKAWKALDIFSEM-------S 418
           +A  V + M  R +    A             +VG A H    ++ DI+ E+       S
Sbjct: 494 EAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHP---RSDDIYEELERLEGLIS 550

Query: 419 QVGIEPD 425
           Q G  PD
Sbjct: 551 QTGYVPD 557


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 171/456 (37%), Positives = 257/456 (56%), Gaps = 32/456 (7%)

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN--LRPDGMILVIVLSACSKLGDLSL 240
           A+  L +  ++I+AY K   P ++   +  + Q+N  + PD      ++  C++      
Sbjct: 70  AKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ-SACEA 128

Query: 241 GIKIHRYITDNHFNLSP-----------------------------DVFIHNALIDMYLK 271
           G  +H  +  + F   P                             D+     ++    K
Sbjct: 129 GPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAK 188

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
           CG+I  AR +FD MP ++ VSWN+MIAG   RGQ +EAL++F+ MQ  G+K ++ +++ V
Sbjct: 189 CGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISV 248

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           + +C ++G L+ GKW H Y++KN I     +G ALVDMY KCG +D+A  VF  M  ++V
Sbjct: 249 VTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNV 308

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
           Y+++  I GLA++G   K L++FS M   GI P+E+TF+ VL  CS  G V+EG  HF  
Sbjct: 309 YTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDS 368

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           M R + ++P+ EHYGCMVDL+GRAG + EAL+ I +MPL P A  WGALL AC+++  +E
Sbjct: 369 MKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNME 428

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           L E     L+  E +  GAY+ ++NIY+    W     +R+ MK   + K PGCS++EV 
Sbjct: 429 LGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVN 488

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GE +EF  GDKSHP    I  +  EI  + K  GY+
Sbjct: 489 GEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYV 524



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 195/420 (46%), Gaps = 57/420 (13%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQN--------PQ 82
           ++S  ++ +LKQ H  ++  G   ++ ++L   + S++  N   NL   N        P 
Sbjct: 16  IDSFITLKELKQIHTQLVINGLLNNR-ELLGQFVASIAVRNPT-NLLYSNQILDQCAKPT 73

Query: 83  VYLYNFIIQCLSNA-NPLEAIALYREMLIKG--LLPNTYTLPYVLKACWQSQSLRVGQQV 139
           ++  N +I+  S +  P ++   Y ++L     + P+ YT  ++++ C QS +   G  V
Sbjct: 74  LFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQS-ACEAGPAV 132

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ----------------- 182
           H   +K     + +V + L+ +YA    + + H++F   Q P                  
Sbjct: 133 HGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDI 192

Query: 183 ----------AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
                      QRD VSW  +I  Y +     EA+  F  M    ++ + + ++ V++AC
Sbjct: 193 GFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTAC 252

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           + LG L  G   H YI  N   ++  V +  AL+DMY KCGN+  A KVF EM  KNV +
Sbjct: 253 THLGALDQGKWAHAYIEKNKIQMT--VNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYT 310

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W++ I GL   G  ++ L++F  M+  G+ P++ T + VL  C+ +G+++ G+     + 
Sbjct: 311 WSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMK 370

Query: 353 KNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
           ++H I         +VD+Y + GR+++A     +M              L  H  AW AL
Sbjct: 371 RDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMP-------------LKPHAGAWGAL 417


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 185/553 (33%), Positives = 307/553 (55%), Gaps = 13/553 (2%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREML-IKGLLPNTY 118
           +Y ++  +    EI +  L+         I   + N  P+EAI L+ +++  +    +  
Sbjct: 264 MYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDV 323

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T    L A  Q Q L +G+Q+HAY +K++ +  V + N ++ +Y+ CG I    K+F   
Sbjct: 324 TFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFS-- 381

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                +RD+V+W T++ A+V+     E ++  F+M +     D + L  +LS  S L   
Sbjct: 382 --NMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQ 439

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--KNVVSWNSM 296
            +G + H Y+  +         +   LIDMY K G I +A+++F++     ++  +WN+M
Sbjct: 440 EIGKQAHAYLIRHGIQFEG---MDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAM 496

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           IAG T  G  +E   +FR+M    ++P+  TL  +L +C  +G + LGK +H +  +  +
Sbjct: 497 IAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFL 556

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
           N + F+G AL+DMY+K G I  A  VF     ++  +YT MI+    HG   +AL +F  
Sbjct: 557 NQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHA 616

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M   GI+PD VTFV +LSACS+AGLV+EG + F  M R Y +QP +EHY C+ D+ GR G
Sbjct: 617 MLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVG 676

Query: 477 LIREALDLIKSMPLVPDAF-VWGALLGACKIHAKVELAEIVMENLVRFEPEG--DGAYIL 533
            + EA + +K +    + F +WG+LLGAC+IH + EL ++V   L+  E      G ++L
Sbjct: 677 RVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVL 736

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
           ++NIY+++  W    ++RK+M+++ + K  GCS VEV G    F   D  HP+  EIY++
Sbjct: 737 LSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQM 796

Query: 594 LDEIMHQSKNHGY 606
           L+++  + K+ GY
Sbjct: 797 LEKLAMEMKDAGY 809



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 215/443 (48%), Gaps = 21/443 (4%)

Query: 77  SLQNPQVYLYN-FIIQCLSNANPLEAIALYREMLIKGLLP----NTYTLPYVLKACWQSQ 131
           S+  P   L+N  II  + N  P++A+  Y  M      P    ++YT    LKAC Q++
Sbjct: 62  SIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRAS---PSPKFDSYTFSSTLKACAQAR 118

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC-GLIKAVHKLFHFRQ--------HPQ 182
           SL++G+ +H + +++   S+  V+N+L+ +Y+ C   +  +   + F             
Sbjct: 119 SLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTM 178

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            +R++V+W T+I  YVK +   EA   F  M +  +RP  +  V V  A  ++ D     
Sbjct: 179 RKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNAN 238

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            ++  +     +   D F+ ++ I MY + G +  AR++FD    +N   WN+MI G   
Sbjct: 239 VLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQ 298

Query: 303 RGQFKEALDIF-RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
                EA+D+F + M+      DD T +  L + + + WL+LG+ +H Y+ K+       
Sbjct: 299 NNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVV 358

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           I NA++ MY++CG I  +F VF +M  RDV ++  M+     +G   + L +  EM + G
Sbjct: 359 ILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQG 418

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
              D VT   +LS  S+    E G +    + R + +Q +    G ++D++ ++GLI  A
Sbjct: 419 FMVDSVTLTALLSLASNLRSQEIGKQAHAYLIR-HGIQFEGMD-GYLIDMYAKSGLITTA 476

Query: 482 LDLI-KSMPLVPDAFVWGALLGA 503
             L  K+     D   W A++  
Sbjct: 477 QQLFEKNSXYDRDEATWNAMIAG 499



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 167/347 (48%), Gaps = 13/347 (3%)

Query: 41  KQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQC-LS 94
           +Q HA+I+K+ S   Q  IL   I+  SR   I        ++    V  +N ++   + 
Sbjct: 342 RQLHAYILKS-STILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQ 400

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    E + L  EM  +G + ++ TL  +L      +S  +G+Q HAY ++  +     +
Sbjct: 401 NGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GM 459

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
              L+ +YA  GLI    +LF   ++    RD  +W  +I  Y +     E    F  M 
Sbjct: 460 DGYLIDMYAKSGLITTAQQLFE--KNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMI 517

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           + N+RP+ + L  +L AC+ +G + LG +IH +      N   +VF+  AL+DMY K G 
Sbjct: 518 EQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLN--QNVFVGTALLDMYSKSGA 575

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I  A  VF E   KN V++ +MI      G  + AL +F  M G G+KPD  T V +L++
Sbjct: 576 ITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSA 635

Query: 335 CANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAF 380
           C+  G ++ G  +   +++ + I         + DM  + GR+ +A+
Sbjct: 636 CSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAY 682



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 14/177 (7%)

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCV 331
           G+   A  +FD +P    V WN++I G        +AL  + RM+     K D +T    
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSST 110

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC-------------GRIDQ 378
           L +CA    L+LGK +H ++ ++H  +   + N+L++MY+ C                D 
Sbjct: 111 LKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDL 170

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
              VF +M+ R+V ++  MI       +  +A  +F  M ++GI P  V+FV V  A
Sbjct: 171 VRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 298/524 (56%), Gaps = 49/524 (9%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR-LYAVCGLIKAVHKLF-HFRQ 179
           ++L +C   +S R  +QVHA  + T L+ +    N L++ L ++   I   H +F HF  
Sbjct: 6   FLLSSC---KSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF-- 60

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR-----PDGMILVIVLSACS- 233
               Q DL  + T+I+    + + T +    F   ++ +R     P+          C  
Sbjct: 61  ---PQPDLFLYNTIIKV---LAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGS 114

Query: 234 ----------KLGDLSLGIKIHRYITD----------------NHFNLSP--DVFIHNAL 265
                     ++  + LG++ + ++T+                  F+ SP  D++  N +
Sbjct: 115 GVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIM 174

Query: 266 IDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           +  Y + G +  AR++FDEMP K+VVSW +MI+G    G F EALDIF  M   G+ P++
Sbjct: 175 LSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNE 234

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
           +TL   L +CAN+  L+ G+W+H Y+ KN+I  +  +   L+DMYAKCG ++ A  +F S
Sbjct: 235 YTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNS 294

Query: 386 MK--CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
                R V+ + AMI G A+HGK+ +A+++F +M    + P++VTFV +L+ACSH   VE
Sbjct: 295 NPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVE 354

Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           EG  +F  M+  Y ++P+ EHYGC+VDL GRAG ++EA ++I SM L PD  +WGALL A
Sbjct: 355 EGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSA 414

Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
           CKIH   E+ E V + +   +P   G ++L+ NIYS    W EA  LR+K+ E   KKTP
Sbjct: 415 CKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTP 474

Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           GCS +E+ G F++F  GD+SHP+T ++Y  LDE++ + K  GYI
Sbjct: 475 GCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYI 518



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 200/416 (48%), Gaps = 41/416 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQ--TQILYDKIISLSRGNEIENLSLQN---PQVYL 85
           L S KS  Q+KQ HA +I TG   H   T  L  ++ S+       ++   +   P ++L
Sbjct: 8   LSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLFL 67

Query: 86  YNFIIQCL--SNANPLEAIALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           YN II+ L  S  +  ++   +R ++ +  L+PN Y+  +  K C     +  G+QV  +
Sbjct: 68  YNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVH 127

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF------------------------- 177
           ++K  L +N++V N L+ +Y     +    K+F +                         
Sbjct: 128 AIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEA 187

Query: 178 RQ--HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235
           RQ      ++D+VSWTT+I   +++ Y  EA+  F +M    + P+   L   L+AC+ L
Sbjct: 188 RQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANL 247

Query: 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP--VKNVVSW 293
             L  G  +H YI  N+  ++  +     LIDMY KCG +  A K+F+  P   + V  W
Sbjct: 248 VALDQGRWMHVYIKKNNIQMNERLLA--GLIDMYAKCGELEFASKLFNSNPRLKRKVWPW 305

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           N+MI G    G+ KEA+++F +M+   + P+  T V +LN+C++   +E G++    +  
Sbjct: 306 NAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMAS 365

Query: 354 NH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKA 407
           ++ +  +      LVD+  + GR+ +A  +  SM    DV  + A++    IH  A
Sbjct: 366 HYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDA 421


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 194/564 (34%), Positives = 302/564 (53%), Gaps = 39/564 (6%)

Query: 77  SLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           S+    V  +N ++  LS +  + EA+ +  +M  KG+  ++ T    L AC +  SLR 
Sbjct: 229 SMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRW 288

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G+Q+HA  ++     + YV + L+ LYA CG  K    +F+        R+ V+WT LI 
Sbjct: 289 GKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLH----DRNNVAWTVLIA 344

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            +++    TE++  F  M    +  D   L  ++S C    DL LG ++H     +    
Sbjct: 345 GFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKS--GQ 402

Query: 256 SPDVFIHNALIDMYLKC-------------------------------GNIPSARKVFDE 284
              V + N+LI MY KC                               GNI  AR+ FD 
Sbjct: 403 IQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDG 462

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDFTLVCVLNSCANIGWLEL 343
           M  KNV++WN+M+      G  ++ L ++  M     ++PD  T V +   CA++G  +L
Sbjct: 463 MSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKL 522

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           G  +     K  +  D  + NA++ MY+KCGRI +A  VF  +  +D+ S+ AMI G + 
Sbjct: 523 GDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQ 582

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           HG   +A++IF ++ + G +PD +++V VLS CSH+GLV+EG  +F  M RV+N+ P  E
Sbjct: 583 HGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLE 642

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           H+ CMVDL GRAG + EA DLI  MP+ P A VWGALL ACKIH   ELAE+  +++   
Sbjct: 643 HFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFEL 702

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           +    G+Y+LM  IY+   +  ++ ++RK M+++ +KK PG S +EV  + + F+  D S
Sbjct: 703 DSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVS 762

Query: 584 HPKTLEIYKLLDEIMHQSKNHGYI 607
           HP+ + I K LDE+M +    GY+
Sbjct: 763 HPQVIAIRKKLDELMEKIARLGYV 786



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 168/380 (44%), Gaps = 62/380 (16%)

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
           T      L++C    +L   + +H   +   L S V++ NTL+  Y  CG +    +L  
Sbjct: 4   TQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLL 63

Query: 177 FR-QHPQA---------------------------QRDLVSWTTLIQAYVKMDYPTEAIL 208
               HP                              RD+ SW TL+  Y +      ++ 
Sbjct: 64  TDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLE 123

Query: 209 SFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
           SF  M ++ +  P+       + +C  LG+ SL +++   +    F    D  +  AL+D
Sbjct: 124 SFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMV--QKFGSQDDSDVAAALVD 181

Query: 268 MYLKCGNIPSARKVF-------------------------------DEMPVKNVVSWNSM 296
           M+++CG +  A ++F                               D MP ++VVSWN M
Sbjct: 182 MFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMM 241

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           ++ L+  G+ +EALD+   MQ  G++ D  T    L +CA +  L  GK +H  + +N  
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 301

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
             D ++ +ALV++YAKCG   +A GVF S+  R+  ++T +I G   HG   +++++F++
Sbjct: 302 CIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQ 361

Query: 417 MSQVGIEPDEVTFVGVLSAC 436
           M    +  D+     ++S C
Sbjct: 362 MRAELMTLDQFALATLISGC 381



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 122/266 (45%), Gaps = 37/266 (13%)

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
           P+V  HN +++ Y+K G +  A ++F  MP ++V SWN++++G     Q+  +L+ F  M
Sbjct: 69  PNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSM 128

Query: 317 QGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
              G   P+ FT    + SC  +G   L   +   + K     D  +  ALVDM+ +CG 
Sbjct: 129 HRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGT 188

Query: 376 IDQA-------------------------FGV------FRSMKCRDVYSYTAMIVGLAIH 404
           +D A                         +GV      F SM  RDV S+  M+  L+  
Sbjct: 189 VDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQS 248

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
           G+  +ALD+  +M   G+  D  T+   L+AC+    +  G +  L    + NL P  + 
Sbjct: 249 GRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQ--LHAQVIRNL-PCIDP 305

Query: 465 Y--GCMVDLFGRAGLIREALDLIKSM 488
           Y    +V+L+ + G  +EA  +  S+
Sbjct: 306 YVASALVELYAKCGCFKEAKGVFNSL 331


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 172/487 (35%), Positives = 286/487 (58%), Gaps = 8/487 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L  C   +++R GQ+VHA+ +KT  L  VY+   L+ LY  C  +     +F       
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFD----EM 71

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            +R++VSWT +I  Y +  + +EA+  F  M +++  P+      VLS+C+      LG 
Sbjct: 72  RERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGR 131

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           +IH +I     N    +F+ ++L+DMY K G I  AR VF+ +P ++VVS  ++I+G   
Sbjct: 132 QIHSHIFKR--NYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 189

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
            G  +EAL++F R+Q  G+  +  T   +L + + +  L+ GK VH+++ +  +     +
Sbjct: 190 LGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVL 249

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG- 421
            N+L+DMY+KCG ++ A  +F +M  R V S+ AM+VG + HGK  + + +F  M +   
Sbjct: 250 QNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENK 309

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN-LQPQTEHYGCMVDLFGRAGLIRE 480
           ++PD VTF+ VLS CSH GL ++G + F +M    + ++   EHYGC++DL GRAG + E
Sbjct: 310 VKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEE 369

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540
           A +LIK MP  P A +WG+LLGAC++H+   + E V   L+  EPE  G Y++++N+Y+S
Sbjct: 370 AFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYAS 429

Query: 541 KNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
             RW++   +R+ M E+ V K PG S +E+    + F   D+SHP+  E++  + E++ +
Sbjct: 430 AGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVK 489

Query: 601 SKNHGYI 607
            K  GY+
Sbjct: 490 FKESGYV 496



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 154/286 (53%), Gaps = 10/286 (3%)

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
           ++L+ C     +  G ++H ++    +   P V++   LI +Y KC  +  AR VFDEM 
Sbjct: 15  MLLNECVNKRAVREGQRVHAHMIKTCY--LPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
            +NVVSW +MI+G + RG   EAL +F +M     +P++FT   VL+SC      ELG+ 
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           +H+++ K +     F+G++L+DMYAK GRI +A GVF  +  RDV S TA+I G A  G 
Sbjct: 133 IHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 192

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTE 463
             +AL++F  + + G+  + VT+  +L+A S    ++ G +   H L     + +  Q  
Sbjct: 193 DEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNS 252

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
               ++D++ + G +  A  +  +MP V     W A+L     H K
Sbjct: 253 ----LIDMYSKCGNLNYARKIFNNMP-VRTVISWNAMLVGYSKHGK 293



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 184/363 (50%), Gaps = 16/363 (4%)

Query: 33  SSKSVGQLKQFHAFIIKTG--SPQHQTQ---ILYDKIISLSRGNEIENLSLQNPQVYLYN 87
           + ++V + ++ HA +IKT    P + +    ILY K   L     + +  ++   V  + 
Sbjct: 22  NKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFD-EMRERNVVSWT 80

Query: 88  FIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
            +I   S      EA+ L+ +ML     PN +T   VL +C       +G+Q+H++  K 
Sbjct: 81  AMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKR 140

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
              ++++V ++L+ +YA  G I     +F        +RD+VS T +I  Y ++    EA
Sbjct: 141 NYENHIFVGSSLLDMYAKAGRIHEARGVF----ECLPERDVVSCTAIISGYAQLGLDEEA 196

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F  + +  +  + +    +L+A S L  L  G ++H ++      L   V + N+LI
Sbjct: 197 LELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVL--RCELPFYVVLQNSLI 254

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDD 325
           DMY KCGN+  ARK+F+ MPV+ V+SWN+M+ G +  G+  E + +F+ M+    +KPD 
Sbjct: 255 DMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDS 314

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCGRIDQAFGVF 383
            T + VL+ C++ G  + G  +   +       +  I +   ++D+  + GR+++AF + 
Sbjct: 315 VTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELI 374

Query: 384 RSM 386
           + M
Sbjct: 375 KKM 377


>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
 gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
          Length = 648

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 189/535 (35%), Positives = 296/535 (55%), Gaps = 14/535 (2%)

Query: 80  NPQVYLYN-FIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ---SLRV 135
           +P V  Y  FI     +A PL+A++ +  ML  GL PN +T P   KA   +    +  V
Sbjct: 77  SPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRCAAAV 136

Query: 136 GQQVHAYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
           G QVHA +++   L  + +V    + +Y   G +    +LF   + P   R++V+W  ++
Sbjct: 137 GPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFD--EMPN--RNVVAWNAVM 192

Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
              V    P E + ++F +  A   P+ + +    +AC+ +  LSLG + H ++    F+
Sbjct: 193 TNAVLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLGEQFHGFVAKCGFD 252

Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
              DV + N+++D Y KC  +  AR VFD M V+N VSW SM+      G  +EA  ++ 
Sbjct: 253 --KDVSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVYL 310

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
             +  G +P DF +  +L +CA +  L+LG+ +H    ++ I+ + F+ +ALVDMY KCG
Sbjct: 311 GARRAGEEPTDFMVSSLLTTCAGLLGLDLGRALHAVAARSCIDANIFVASALVDMYGKCG 370

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE--PDEVTFVGV 432
            I  A  VF  M  R++ ++ AMI G A  G AW AL +F EM  +G E  P+ +T V V
Sbjct: 371 GIQDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAVFDEMI-MGRETAPNYITIVNV 429

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           L+ACS  GL +EG + F  M + + ++P+ EHY C+VDL GRAG+  +A ++I+ MP+ P
Sbjct: 430 LTACSRGGLTKEGYELFQTMKQRFGIEPRIEHYACVVDLLGRAGMEEQAYEIIQGMPMRP 489

Query: 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552
              VWGALLG CK+H K EL  +  E L   +P+  G ++L++N+ +S  RW EA  +RK
Sbjct: 490 SISVWGALLGGCKMHGKTELGRVAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRK 549

Query: 553 KMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +MK   +KK PG S +      + F+  D +H    EI  LL ++  Q +  GY+
Sbjct: 550 EMKNVGIKKDPGRSWITWKNIVHVFQAKDTTHEMNSEIQALLAKLKGQMQGAGYM 604



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 7/220 (3%)

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEM-PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           FI   L+++Y K  ++P A        P   VVS+ + I+G     +  +AL  F  M  
Sbjct: 50  FICAHLVNLYSKL-DLPGAAAAALAADPSPTVVSYTAFISGAAQHARPLQALSAFAAMLR 108

Query: 319 LGLKPDDFTLVCVLNSCANIG---WLELGKWVHTY-LDKNHINTDGFIGNALVDMYAKCG 374
           LGL+P+DFT      + A+        +G  VH   L   ++  D F+  A +DMY K G
Sbjct: 109 LGLRPNDFTFPSAFKAAASAPPRCAAAVGPQVHALALRFGYLPDDAFVSCAALDMYFKTG 168

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           R+  A  +F  M  R+V ++ A++    + G+  + ++ +  +   G  P+ V+     +
Sbjct: 169 RLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFN 228

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           AC+    +  G + F                  MVD +G+
Sbjct: 229 ACAGMTCLSLG-EQFHGFVAKCGFDKDVSVSNSMVDFYGK 267


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 171/476 (35%), Positives = 281/476 (59%), Gaps = 11/476 (2%)

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
             P+ ++ L+ +ML  G+ PN +TL  V+KAC +   L++G+  H   +     SN  + 
Sbjct: 140 GKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIA 199

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           + L+ ++     +    +LF     P    D + WT++I A  + D+  EA+  F+ M +
Sbjct: 200 SALIDMHGRNCALDDARQLFDELLEP----DAICWTSIISALTRNDFFDEALRFFYSMQR 255

Query: 216 AN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
            + + PDG     VL+AC  LG L  G ++H  +    F    +V + ++L+DMY KCG+
Sbjct: 256 DHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGF--CGNVVVESSLVDMYGKCGS 313

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  ++++FD MP+KN VSW++++ G    G FK  + IFR+M+    K D +    +L +
Sbjct: 314 VGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRT 369

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA +  +  GK VH    +     D  + +ALVD+YAKCG I+ A  +F  M  R++ ++
Sbjct: 370 CAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITW 429

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            +MI G A +G+  +AL IF++M + GI+PD ++F+G+L ACSH GLV+EG ++F+ M++
Sbjct: 430 NSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTK 489

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y ++   EHY CMVDL GRAGL+ EA  LI++     D+ +W ALLGAC      E+AE
Sbjct: 490 DYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAE 549

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
            + + ++  EP+   +Y+L+ N+Y +  RW +AL++R+ MK+R V K PG S +E 
Sbjct: 550 RIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIET 605



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 201/407 (49%), Gaps = 24/407 (5%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL-IKAVHKLFHFRQHP 181
           +L+ C +  +   G Q+HA+ +K+ L  + +V N+L+ LY   G       K+F      
Sbjct: 65  LLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFD----G 120

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
              +D++SWT++I  YV++  P  ++  F+ M    + P+   L  V+ ACS+LGDL LG
Sbjct: 121 LFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLG 180

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
              H  +    F+   +  I +ALIDM+ +   +  AR++FDE+   + + W S+I+ LT
Sbjct: 181 RIFHGVVLGRGFD--SNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALT 238

Query: 302 HRGQFKEALDIFRRMQ-GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
               F EAL  F  MQ   G+ PD FT   VL +C N+G L+ GK VH       + T G
Sbjct: 239 RNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHA-----KVITTG 293

Query: 361 FIGN-----ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           F GN     +LVDMY KCG + ++  +F  M  ++  S++A++ G   +G     + IF 
Sbjct: 294 FCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFR 353

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           +M +V    D   F  +L  C+    V +G +      R    +        +VDL+ + 
Sbjct: 354 KMEKV----DLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVE-SALVDLYAKC 408

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
           G I  A  +   MP V +   W +++G    + + E A  +   +V+
Sbjct: 409 GCIEYAQTIFDQMP-VRNLITWNSMIGGFAQNGRGEEALRIFNQMVK 454



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 100/211 (47%), Gaps = 5/211 (2%)

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           S I  L   G+   AL + + +    +         +L +C  +     G  +H ++ K+
Sbjct: 29  SKILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKS 88

Query: 355 HINTDGFIGNALVDMYAKCGR-IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
            +  D F+GN+L+ +Y K G    +   VF  +  +DV S+T+MI G    GK   +L++
Sbjct: 89  GLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLEL 148

Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           F +M   G+EP+  T   V+ ACS  G ++ G   H + + R ++          ++D+ 
Sbjct: 149 FWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIAS--ALIDMH 206

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           GR   + +A  L   + L PDA  W +++ A
Sbjct: 207 GRNCALDDARQLFDEL-LEPDAICWTSIISA 236


>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
          Length = 396

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 160/396 (40%), Positives = 261/396 (65%), Gaps = 6/396 (1%)

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           MC+    PB + L  VLS C+KLGDL +G++I + + DN  NL  ++ +  A+++MY+KC
Sbjct: 1   MCE----PBEITLATVLSICAKLGDLEMGLRIKK-LXDNK-NLGSNMIVSTAMLEMYVKC 54

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G +   R VFD M  ++VV W++MIAG    G+  EAL++F  M+   +KP+D TLV VL
Sbjct: 55  GAVDDGRLVFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVL 114

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           ++CA +G +E G+ + +Y++   + ++ ++ +AL+ MY+KCG I +A  +F  +  RD  
Sbjct: 115 SACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNV 174

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           ++ +MI+GLAI+G A  A+ +++ M ++ ++P+ +TFVG+L+AC+HAG VE G + F  M
Sbjct: 175 TWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFRSM 234

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              +N+ P  EH+ C+VDLF R+G + +A + I  M + P+  +WG LL A +IH  VEL
Sbjct: 235 RSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVEL 294

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           AE+  + L+  EP+  G Y++++NIY+S +RW+EALK+RK MK+++V+K    S VEV  
Sbjct: 295 AELAGKKLLELEPDNSGNYVILSNIYASASRWQEALKVRKLMKDKRVQKAAAYSWVEVED 354

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
             ++F  GD SHP++ E+Y  +D +   S   GY L
Sbjct: 355 RVHKFLVGDTSHPRSDEVYSTIDGLALLSTWVGYEL 390



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 148/269 (55%), Gaps = 11/269 (4%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           PB  TL  VL  C +   L +G ++        L SN+ V   ++ +Y  CG +     +
Sbjct: 4   PBEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLV 63

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
           F       A+RD+V W+ +I  Y +     EA+  F  M  A ++P+ + LV VLSAC++
Sbjct: 64  FDH----MARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQ 119

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           LG +  G +I  Y+      L  +V++ +AL+ MY KCGNI  AR++FD++P ++ V+WN
Sbjct: 120 LGSVETGERIGSYVESR--GLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWN 177

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           SMI GL   G  ++A+ ++ RM+ + +KP++ T V +L +C + G +ELG      +  +
Sbjct: 178 SMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFRSMRSD 237

Query: 355 H---INTDGFIGNALVDMYAKCGRIDQAF 380
           H    N + F    +VD++ + GR+  A+
Sbjct: 238 HNISPNIEHFA--CIVDLFCRSGRLIDAY 264



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 8/232 (3%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    EA+ L+  M    + PN  TL  VL AC Q  S+  G+++ +Y     L+SNVYV
Sbjct: 85  NGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYV 144

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            + L+ +Y+ CG I    ++F   + P  QRD V+W ++I       +  +AI  +  M 
Sbjct: 145 ASALLGMYSKCGNIIKARQIFD--KLP--QRDNVTWNSMIMGLAINGFAEDAIALYNRMK 200

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +  ++P+ +  V +L+AC+  G + LG++  R +  +H N+SP++     ++D++ + G 
Sbjct: 201 EIEVKPNNITFVGLLTACTHAGHVELGLEFFRSMRSDH-NISPNIEHFACIVDLFCRSGR 259

Query: 275 IPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
           +  A +    M V+ NVV W ++++    R      L      + L L+PD+
Sbjct: 260 LIDAYEFICRMEVEPNVVIWGTLLSA--SRIHLNVELAELAGKKLLELEPDN 309


>gi|125595818|gb|EAZ35598.1| hypothetical protein OsJ_19887 [Oryza sativa Japonica Group]
          Length = 495

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 177/437 (40%), Positives = 256/437 (58%), Gaps = 30/437 (6%)

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K  L     V + L+ LY   G + +   L      P A RD+VS T ++  + +  +  
Sbjct: 78  KLGLDRRRAVRDGLVELYLARGELASARALVD--GFP-AGRDVVSCTAMVTGHARHGFLD 134

Query: 205 EAILSFFDMCQAN--LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
           EA++ FF M      +               ++GDL+LG + HR + +    +  DV   
Sbjct: 135 EAVVLFFAMADDRCVVHRRPSPPPRRSRRARQIGDLALGREAHRRVAERKVAM--DVVAW 192

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
           NAL+DM                MPVK NVVSWN+M++     G+ +EAL +F+ MQ   +
Sbjct: 193 NALVDM---------------RMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAV 237

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           +PDD T V  L +CA +G L+ G+W+H Y+ +   + DG +GNAL+DMYAKCG +DQA  
Sbjct: 238 RPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAVDQATE 297

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF  M  RDVY+YT+MI+GLA+HG+   AL +F+ M + G+ P+EVT +GVL+AC HAGL
Sbjct: 298 VFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGL 357

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           VEEG +    M      +P+ EHYGC+VD+ GRAG + +A +LI +MP+  DA +W +LL
Sbjct: 358 VEEGLQQLNAMP-----EPRIEHYGCVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLL 412

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
            AC+ H  VE AE VM   V     GD  Y+LM+N Y+S  R  EA+K+R +M+  ++ K
Sbjct: 413 AACRAHGDVERAERVMRRRVADADAGD--YVLMSNTYASNGRHGEAVKVRGQMRRNEIDK 470

Query: 562 TPGCSLVEVYGEFYEFR 578
            PGCSL+E+ G  +EF+
Sbjct: 471 VPGCSLIEIDGVVHEFK 487



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 16/238 (6%)

Query: 82  QVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V  +N ++   + A  LE A+AL++EM    + P+  T    L AC Q  +L  G+ +H
Sbjct: 205 NVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLH 264

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           AY  +    ++  V N L+ +YA CG +    ++F       A+RD+ ++T++I      
Sbjct: 265 AYMGRMGHSADGVVGNALLDMYAKCGAVDQATEVF----DGMARRDVYTYTSMILGLAMH 320

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
               +A+  F  M +A + P+ + L+ VL+AC   G +  G++          N  P+  
Sbjct: 321 GRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQ--------QLNAMPEPR 372

Query: 261 I--HNALIDMYLKCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRR 315
           I  +  ++DM  + G +  A ++   MPV  + + W+S++A     G  + A  + RR
Sbjct: 373 IEHYGCVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLLAACRAHGDVERAERVMRR 430


>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
          Length = 577

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 183/532 (34%), Positives = 305/532 (57%), Gaps = 49/532 (9%)

Query: 78  LQNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +Q P V++YN + +  ++ ++P+ ++ LY  ML   + P++YT   ++KA   S + R G
Sbjct: 86  MQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKA--SSFASRFG 143

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           + + A+  K     +V +  TL+  Y+  G I+   K+F        +RD ++WTT++ A
Sbjct: 144 ESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFD----EMPERDDIAWTTMVSA 199

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y ++           DM  AN   + M         S+  + +                 
Sbjct: 200 YRRV----------LDMDSANSLANQM---------SEKNEAT----------------- 223

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
                 N LI+ Y+  GN+  A  +F++MPVK+++SW +MI G +   +++EA+ +F +M
Sbjct: 224 -----SNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKM 278

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
              G+ PD+ T+  V+++CA++G LE+GK VH Y  +N    D +IG+ALVDMY+KCG +
Sbjct: 279 MEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSL 338

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           ++A  VF ++  ++++ + ++I GLA HG A +AL +F++M    ++P+ VTFV V +AC
Sbjct: 339 ERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTAC 398

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           +HAGLV+EG + +  M   Y++    EHYG MV LF +AGLI EAL+LI +M   P+A +
Sbjct: 399 THAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVI 458

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           WGALL  C+IH  + +AEI    L+  EP   G Y L+ ++Y+ +NRW++  ++R +M+E
Sbjct: 459 WGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRE 518

Query: 557 RKVKKT-PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             ++K  PG S + +    + F   DKSH  + E+  LLDEI  Q    GY+
Sbjct: 519 LGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEVCLLLDEIYDQMGLAGYV 570



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 90/236 (38%), Gaps = 34/236 (14%)

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K  +N D  + N  +       R+D A      M+  +V+ Y A+  G        ++L+
Sbjct: 53  KTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLE 112

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDL 471
           ++  M +  + P   T+  ++ A S A    E  + H       ++++ QT     ++D 
Sbjct: 113 LYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKFGFGFHVKIQT----TLIDF 168

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGA--------------------------CK 505
           +   G IREA  +   MP   D   W  ++ A                          C 
Sbjct: 169 YSATGRIREARKVFDEMP-ERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCL 227

Query: 506 IHAKVELAEIVM-ENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           I+  + L  +   E+L    P  D  ++  M   YS   R++EA+ +  KM E  +
Sbjct: 228 INGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGI 283


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 188/537 (35%), Positives = 294/537 (54%), Gaps = 30/537 (5%)

Query: 99  LEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           L+++  Y  ML  G    N   L  +L    +   + +G QVH + +K    S V+V + 
Sbjct: 123 LQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSP 182

Query: 158 LMRLYAVCGLIKAVHKLFH-------------------------FRQ--HPQAQRDLVSW 190
           L+ +Y+  GL+    + F                           RQ  +   ++D +SW
Sbjct: 183 LVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISW 242

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
           T +I  + +     EAI  F +M   NL  D      VL+AC  +  L  G ++H YI  
Sbjct: 243 TAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIR 302

Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
             +    ++F+ +AL+DMY KC +I SA  VF +M  KNVVSW +M+ G    G  +EA+
Sbjct: 303 TDYQ--DNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAV 360

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
            IF  MQ  G++PDDFTL  V++SCAN+  LE G   H     + + +   + NALV +Y
Sbjct: 361 KIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLY 420

Query: 371 AKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430
            KCG I+ +  +F  M   D  S+TA++ G A  GKA + L +F  M   G +PD+VTF+
Sbjct: 421 GKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFI 480

Query: 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL 490
           GVLSACS AGLV++G + F  M + + + P  +HY CM+DLF RAG + EA   I  MP 
Sbjct: 481 GVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPF 540

Query: 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
            PDA  W +LL +C+ H  +E+ +   E+L++ EP    +YIL+++IY++K +W+E   L
Sbjct: 541 SPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANL 600

Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           RK M+++ ++K PGCS ++   + + F   D+S+P + +IY  L+++ ++    GY+
Sbjct: 601 RKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYV 657



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 222/472 (47%), Gaps = 75/472 (15%)

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           N+Y +NTL+  Y+    +  + ++FH        RD+VSW +LI AY    +  +++ ++
Sbjct: 74  NLYSWNTLLSSYSKLACLPEMERVFH----AMPTRDMVSWNSLISAYAGRGFLLQSVKAY 129

Query: 211 FDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
             M        + + L  +L   SK G + LG+++H ++    F     VF+ + L+DMY
Sbjct: 130 NLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVK--FGFQSYVFVGSPLVDMY 187

Query: 270 LKCGNIPSARKVFDEMPVKNVV-------------------------------SWNSMIA 298
            K G +  AR+ FDEMP KNVV                               SW +MIA
Sbjct: 188 SKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIA 247

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G T  G  +EA+D+FR M+   L+ D +T   VL +C  +  L+ GK VH Y+ +     
Sbjct: 248 GFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQD 307

Query: 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMS 418
           + F+G+ALVDMY KC  I  A  VFR M C++V S+TAM+VG   +G + +A+ IF +M 
Sbjct: 308 NIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQ 367

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEG----------------------------CKHFL 450
             GIEPD+ T   V+S+C++   +EEG                            C    
Sbjct: 368 NNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIE 427

Query: 451 DMSRVYNLQPQTEH--YGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACK 505
           D  R+++     +   +  +V  + + G   E L L +SM      PD   +  +L AC 
Sbjct: 428 DSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACS 487

Query: 506 IHAKVELAEIVMENLV---RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
               V+    + E+++   R  P  D  Y  M +++S   R +EA K   KM
Sbjct: 488 RAGLVQKGNQIFESMIKEHRIIPIED-HYTCMIDLFSRAGRLEEARKFINKM 538



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 136/322 (42%), Gaps = 67/322 (20%)

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV------------ 290
           KIH +I     N  P++F+ N L+  Y K   I  AR+VFD+MP +N+            
Sbjct: 30  KIHCHIIKAFRN--PEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSK 87

Query: 291 -------------------VSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVC 330
                              VSWNS+I+    RG   +++  +  M   G    +   L  
Sbjct: 88  LACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALST 147

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK------------------ 372
           +L   +  G + LG  VH ++ K    +  F+G+ LVDMY+K                  
Sbjct: 148 MLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKN 207

Query: 373 -------------CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
                        C RI+ +  +F  M+ +D  S+TAMI G   +G   +A+D+F EM  
Sbjct: 208 VVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRL 267

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
             +E D+ TF  VL+AC     ++EG +    + R  + Q        +VD++ +   I+
Sbjct: 268 ENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT-DYQDNIFVGSALVDMYCKCKSIK 326

Query: 480 EALDLIKSMPLVPDAFVWGALL 501
            A  + + M    +   W A+L
Sbjct: 327 SAETVFRKMN-CKNVVSWTAML 347


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 196/572 (34%), Positives = 302/572 (52%), Gaps = 14/572 (2%)

Query: 42  QFHAFIIKTGSPQH---QTQI--LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H  +IK+G   H   Q  +  +Y K   ++  +++  +      +   + I       
Sbjct: 202 QLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLG 261

Query: 97  NPLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
             +EA+ L+R+M  +G+  PN +    V  AC        G+Q+     K  L  NV+  
Sbjct: 262 YEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAG 321

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
            +L  +YA  G + +  + F+  + P    DLVSW  +I A    D   EAI  F  M  
Sbjct: 322 CSLCDMYAKFGFLPSAKRAFYQIESP----DLVSWNAIIAALANSDV-NEAIYFFCQMIH 376

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             L PD +  + +L AC     L+ G++IH YI      L     + N+L+ MY KC N+
Sbjct: 377 MGLMPDDITFLNLLCACGSPMTLNQGMQIHSYIIK--MGLDKVAAVCNSLLTMYTKCSNL 434

Query: 276 PSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
             A  VF ++    N+VSWN++++  +   Q  EA  +F+ M     KPD+ T+  +L +
Sbjct: 435 HDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGT 494

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA +  LE+G  VH +  K+ +  D  + N L+DMYAKCG +  A  VF S +  D+ S+
Sbjct: 495 CAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSW 554

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           +++IVG A  G   +AL++F  M  +G++P+EVT++GVLSACSH GLVEEG   +  M  
Sbjct: 555 SSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEI 614

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
              + P  EH  CMVDL  RAG + EA + IK     PD  +W  LL +CK H  V++AE
Sbjct: 615 ELGIPPTREHVSCMVDLLARAGCLYEAENFIKKTGFDPDITMWKTLLASCKTHGNVDIAE 674

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
              EN+++ +P    A +L++NI++S   WKE  +LR  MK+  V+K PG S +EV  + 
Sbjct: 675 RAAENILKLDPSNSAALVLLSNIHASAGNWKEVARLRNLMKQMGVQKVPGQSWIEVKDQI 734

Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           + F   D SHP+   IY +L+++  Q  + GY
Sbjct: 735 HVFFSEDSSHPQRGNIYTMLEDLWLQMLDDGY 766



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 202/401 (50%), Gaps = 17/401 (4%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L P+TY    ++ AC   +SL+ G+++H + +K+    ++ + N ++ +Y  CG +K   
Sbjct: 78  LEPSTYV--NLILACTNVRSLKYGKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDAR 135

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
           K F   Q     R +VSWT +I  Y +     +AI+ +  M ++   PD +    ++ AC
Sbjct: 136 KAFDTMQ----LRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKAC 191

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
              GD+ LG ++H ++  + ++    +   NALI MY K G I  A  VF  +  K+++S
Sbjct: 192 CIAGDIDLGGQLHGHVIKSGYD--HHLIAQNALISMYTKFGQIAHASDVFTMISTKDLIS 249

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGL-KPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           W SMI G T  G   EAL +FR M   G+ +P++F    V ++C ++   E G+ +    
Sbjct: 250 WASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMC 309

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            K  +  + F G +L DMYAK G +  A   F  ++  D+ S+ A+I  LA +    +A+
Sbjct: 310 AKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALA-NSDVNEAI 368

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK---HFLDMSRVYNLQPQTEHYGCM 468
             F +M  +G+ PD++TF+ +L AC     + +G +   + + M     L         +
Sbjct: 369 YFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKMG----LDKVAAVCNSL 424

Query: 469 VDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
           + ++ +   + +A ++ K +    +   W A+L AC  H +
Sbjct: 425 LTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQ 465



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 128/476 (26%), Positives = 230/476 (48%), Gaps = 20/476 (4%)

Query: 35  KSVGQLKQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFI 89
           +S+   K+ H  I+K+        Q+    +Y K  SL    +  + ++Q   V  +  +
Sbjct: 94  RSLKYGKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFD-TMQLRSVVSWTIM 152

Query: 90  IQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
           I   S N    +AI +Y +ML  G  P+  T   ++KAC  +  + +G Q+H + +K+  
Sbjct: 153 ISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGY 212

Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             ++   N L+ +Y   G I     +F       + +DL+SW ++I  + ++ Y  EA+ 
Sbjct: 213 DHHLIAQNALISMYTKFGQIAHASDVFTMI----STKDLISWASMITGFTQLGYEIEALY 268

Query: 209 SFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
            F DM  Q   +P+  I   V SAC  L     G +I        F L  +VF   +L D
Sbjct: 269 LFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAK--FGLGRNVFAGCSLCD 326

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY K G +PSA++ F ++   ++VSWN++IA L +     EA+  F +M  +GL PDD T
Sbjct: 327 MYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALAN-SDVNEAIYFFCQMIHMGLMPDDIT 385

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM- 386
            + +L +C +   L  G  +H+Y+ K  ++    + N+L+ MY KC  +  AF VF+ + 
Sbjct: 386 FLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDIS 445

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
           +  ++ S+ A++   + H +  +A  +F  M     +PD +T   +L  C+    +E G 
Sbjct: 446 ENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGN 505

Query: 447 K-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           + H   +     +     +   ++D++ + GL++ A  +  S    PD   W +L+
Sbjct: 506 QVHCFSVKSGLVVDVSVSNR--LIDMYAKCGLLKHARYVFDSTQ-NPDIVSWSSLI 558



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 165/321 (51%), Gaps = 12/321 (3%)

Query: 188 VSWTTLIQAYVKMDYPTEAILSF-FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
           +S  + I    K  +  EA+ +F F +  ++++ +    V ++ AC+ +  L  G +IH 
Sbjct: 45  LSTNSYINLMCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHD 104

Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
           +I  +  N  PD+ + N +++MY KCG++  ARK FD M +++VVSW  MI+G +  GQ 
Sbjct: 105 HILKS--NCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQE 162

Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
            +A+ ++ +M   G  PD  T   ++ +C   G ++LG  +H ++ K+  +      NAL
Sbjct: 163 NDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNAL 222

Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI-EPD 425
           + MY K G+I  A  VF  +  +D+ S+ +MI G    G   +AL +F +M + G+ +P+
Sbjct: 223 ISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPN 282

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI---REAL 482
           E  F  V SAC  + L  E  +    M   + L         + D++ + G +   + A 
Sbjct: 283 EFIFGSVFSAC-RSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAF 341

Query: 483 DLIKSMPLVPDAFVWGALLGA 503
             I+S    PD   W A++ A
Sbjct: 342 YQIES----PDLVSWNAIIAA 358


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 186/578 (32%), Positives = 316/578 (54%), Gaps = 16/578 (2%)

Query: 36  SVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQ----VYLYNFIIQ 91
           +V  L + HA ++   S Q+    L      +   +  E+    +P     +  +N ++ 
Sbjct: 27  TVAALTRLHALLV-VSSSQNLFPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLA 85

Query: 92  CLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
             S A +P  A+ ++R  L     P++ T    L AC +   L   + V   +       
Sbjct: 86  ARSRAGSPGAALRVFRA-LPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGR 144

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           +V+V + L+ +Y+ CG +    ++F        ++D V+W+T++  +V    P EA+  +
Sbjct: 145 DVFVCSALLHVYSRCGAMGDAIRVFD----GMPRKDHVAWSTMVAGFVSAGRPVEALGMY 200

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH-RYITDNHFNLSPDVFIHNALIDMY 269
             M +  +  D +++V V+ AC+  G+  +G  +H R++      +  DV I  +L+DMY
Sbjct: 201 SRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFL---RHGMRMDVVIATSLVDMY 257

Query: 270 LKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
            K G+   AR+VF  MP +N VSWN++I+G    G   EALD+FR M   GL+PD   LV
Sbjct: 258 AKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALV 317

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
             L +CA++G+L+LGK +H ++ +  +     +G A++DMY+KCG ++ A  +F  +  R
Sbjct: 318 SALLACADVGFLKLGKSIHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSR 376

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           D+  + AMI     HG    AL +F E+++ GI+PD  TF  +LSA SH+GLVEEG   F
Sbjct: 377 DLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWF 436

Query: 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAK 509
             M   + ++P  +H  C+VDL  R+GL+ EA +++ SM   P   +W ALL  C  + K
Sbjct: 437 DRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKK 496

Query: 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVE 569
           +EL E + + ++  +PE  G   L++N+Y++  +W +  ++RK MK+   KK PG SL+E
Sbjct: 497 LELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIE 556

Query: 570 VYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           V+G  + F   D+SHP+  EI K++ ++  + +  GY+
Sbjct: 557 VHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYV 594


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 160/374 (42%), Positives = 247/374 (66%), Gaps = 3/374 (0%)

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           + D+ LG  IH  +  + F     +++ N+L+ +Y  CG++ SA KVFD+MP K++V+WN
Sbjct: 1   MADVRLGETIHSVVIRSGFG--SLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 58

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           S+I G    G+ +EAL ++  M   G+KPD FT+V +L++CA IG L LGK VH Y+ K 
Sbjct: 59  SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 118

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            +  +    N L+D+YA+CGR+++A  +F  M  ++  S+T++IVGLA++G   +A+++F
Sbjct: 119 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELF 178

Query: 415 SEM-SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473
             M S  G+ P E+TFVG+L ACSH G+V+EG ++F  M   Y ++P+ EH+GCMVDL  
Sbjct: 179 KYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLA 238

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
           RAG +++A + IKSMP+ P+  +W  LLGAC +H   +LAE     +++ EP   G Y+L
Sbjct: 239 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVL 298

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
           ++N+Y+S+ RW +  K+RK+M    VKK PG SLVEV    +EF  GDKSHP++  IY  
Sbjct: 299 LSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAK 358

Query: 594 LDEIMHQSKNHGYI 607
           L E+  + ++ GY+
Sbjct: 359 LKEMTGRLRSEGYV 372



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 171/296 (57%), Gaps = 11/296 (3%)

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           +R+G+ +H+  +++   S +YV N+L+ LYA CG + + +K+F        ++DLV+W +
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFD----KMPEKDLVAWNS 59

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           +I  + +   P EA+  + +M    ++PDG  +V +LSAC+K+G L+LG ++H Y+    
Sbjct: 60  VINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK-- 117

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
             L+ ++   N L+D+Y +CG +  A+ +FDEM  KN VSW S+I GL   G  KEA+++
Sbjct: 118 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIEL 177

Query: 313 FRRMQGL-GLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMY 370
           F+ M+   GL P + T V +L +C++ G ++ G ++     ++  I         +VD+ 
Sbjct: 178 FKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLL 237

Query: 371 AKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           A+ G++ +A+   +SM  + +V  +  ++    +HG +   L  F+ +  + +EP+
Sbjct: 238 ARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDS--DLAEFARIQILQLEPN 291



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 13/250 (5%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I   + N  P EA+ALY EM  KG+ P+ +T+  +L AC +  +L +G++VH Y +
Sbjct: 57  WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI 116

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K  L  N++  N L+ LYA CG ++    LF         ++ VSWT+LI       +  
Sbjct: 117 KVGLTRNLHSSNVLLDLYARCGRVEEAKTLF----DEMVDKNSVSWTSLIVGLAVNGFGK 172

Query: 205 EAILSFFDM-CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
           EAI  F  M     L P  +  V +L ACS  G +  G +  R + +  + + P +    
Sbjct: 173 EAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREE-YKIEPRIEHFG 231

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
            ++D+  + G +  A +    MP++ NVV W +++   T  G     L  F R+Q L L+
Sbjct: 232 CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGD--SDLAEFARIQILQLE 289

Query: 323 PD---DFTLV 329
           P+   D+ L+
Sbjct: 290 PNHSGDYVLL 299


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 188/572 (32%), Positives = 309/572 (54%), Gaps = 22/572 (3%)

Query: 41  KQFHAFIIKTG-----SPQHQTQILYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCL- 93
           KQ HA +IK G     S Q+Q   +Y K        ++ E LS++N  V  +N +I+ + 
Sbjct: 70  KQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRN--VVSWNILIRGIV 127

Query: 94  -------SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
                  +++N  +  + ++ ML++ ++P++ T   +   C +   + +G Q+H +++K 
Sbjct: 128 GCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKL 187

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            L  + +V + L+ LYA CGL++   ++F   QH    RDLV W  +I  Y     P EA
Sbjct: 188 GLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQH----RDLVVWNVMISCYALNCLPEEA 243

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
            + F  M       D      +LS C  L     G ++H +I    F+   DV + +ALI
Sbjct: 244 FVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFD--SDVLVASALI 301

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           +MY K  NI  A ++FD M ++NVV+WN++I G  +R +  E + + R M   G  PD+ 
Sbjct: 302 NMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDEL 361

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T+   ++ C  +  +      H +  K+       + N+L+  Y+KCG I  A   FR  
Sbjct: 362 TISSTISLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLT 421

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
           +  D+ S+T++I   A HG A +A ++F +M   GI PD+++F+GVLSACSH GLV +G 
Sbjct: 422 REPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSHCGLVTKGL 481

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
            +F  M+ VY + P + HY C+VDL GR GLI EA + ++SMP+  ++   GA + +C +
Sbjct: 482 HYFNLMTSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSMPMEAESNTLGAFVASCNL 541

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           HA + LA+   E L   EPE +  Y +M+NIY+S   W +  ++R+ M  +   + PGCS
Sbjct: 542 HANIGLAKWAAEKLFTIEPEKNVNYAVMSNIYASHRHWSDVERVRRMMGNKCDARVPGCS 601

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
            +E+  + + F   DK HPK LE++  L  ++
Sbjct: 602 WIEITNQVHSFVSNDKIHPKALEMHATLKMLL 633



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 208/450 (46%), Gaps = 28/450 (6%)

Query: 86  YNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTL--PYVLKACWQSQSLRVGQQVHAY 142
           Y+F+ QC  + + + A + +  E   +   P+T  L     LK   +   L  G+Q+HA+
Sbjct: 18  YSFVTQCTHSWSIIRASVPVPDETHFRD--PHTVHLFCANALKVSAKRALLPEGKQLHAH 75

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYV---- 198
            +K      + + N ++ +Y  C       KLF       + R++VSW  LI+  V    
Sbjct: 76  LIKFGFCHVLSLQNQILGVYLKCTEADDAEKLF----EELSVRNVVSWNILIRGIVGCGD 131

Query: 199 --KMDYPTEAILSFFD-MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
             + D   +   S+F  M    + PD      +   C K  D+ +G ++H +       L
Sbjct: 132 ANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVK--LGL 189

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             D F+ + L+D+Y +CG + +AR+VF  +  +++V WN MI+        +EA  +F  
Sbjct: 190 DLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVMFNL 249

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+  G   D+FT   +L+ C ++ + + GK VH ++ +   ++D  + +AL++MYAK   
Sbjct: 250 MRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYAKNEN 309

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           I  A  +F +M  R+V ++  +IVG     +  + + +  EM + G  PDE+T    +S 
Sbjct: 310 IVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISL 369

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHY----GCMVDLFGRAGLIREALDLIKSMPLV 491
           C +   + E  +     +  + ++   + +      ++  + + G I  A    + +   
Sbjct: 370 CGYVSAITETMQ-----AHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFR-LTRE 423

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLV 521
           PD   W +L+ A   H   + A  V E ++
Sbjct: 424 PDLVSWTSLINAYAFHGLAKEATEVFEKML 453


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 180/487 (36%), Positives = 280/487 (57%), Gaps = 9/487 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L++C  S SLR G+Q+H   + + L  +  +   L+ LYA CG +    +LF       
Sbjct: 68  ILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFD----GM 123

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFF-DMCQANLRPDGMILVIVLSACSKLGDLSLG 241
            +R++  W  LI+AY + + P EA +  +  M +  + PD     +VL AC+ L DL  G
Sbjct: 124 PKRNVFLWNVLIRAYAR-EGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETG 182

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
            ++H+ ++   +    DVF+   ++DMY KCG +  AR VFD + V++ V WNSMIA   
Sbjct: 183 REVHQRVSGTRWG--QDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYG 240

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
             G+  EAL + R M   G+ P   TLV  +++ A+   L  G+ +H +  +        
Sbjct: 241 QNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDK 300

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQV 420
           +  +LVDMYAK G +  A  +F  +  R++ S+ AMI G  +HG A +AL +F++M    
Sbjct: 301 LKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDA 360

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
            + PD +TFVGVLSAC+H G+VEE  + F  M   Y+++P  +HY C++D+ G  G   E
Sbjct: 361 QVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEE 420

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540
           A DLIK M + PD+ +WGALL  CKIH  VEL E+ ++ L+  EPE  G Y+ ++NIY+ 
Sbjct: 421 AYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQ 480

Query: 541 KNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600
             +W++A ++RK M  R +KK   CS +E+ G+ + F  GD SHP++ EIY  L+ +   
Sbjct: 481 SGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGL 540

Query: 601 SKNHGYI 607
             + GY+
Sbjct: 541 MSDAGYV 547



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 164/328 (50%), Gaps = 12/328 (3%)

Query: 82  QVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
            V+L+N +I+  +   P EA + LYR M+  G+ P+ +T P VLKAC     L  G++VH
Sbjct: 127 NVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVH 186

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
                T    +V+V   ++ +YA CG +     +F       A RD V W ++I AY + 
Sbjct: 187 QRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVF----DGIAVRDAVVWNSMIAAYGQN 242

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
             P EA+    DM    + P    LV  +SA +    L  G ++H +     F L     
Sbjct: 243 GRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDK-- 300

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
           +  +L+DMY K G +  AR +F+++  + +VSWN+MI G    G   EAL +F +M+G  
Sbjct: 301 LKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDA 360

Query: 321 -LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYAKCGRID 377
            + PD+ T V VL++C + G +E  K    YL  N  +    + +   ++D+    GR +
Sbjct: 361 QVTPDNITFVGVLSACNHGGMVEEAKEFF-YLMVNAYSIKPTVQHYTCVIDVLGHTGRFE 419

Query: 378 QAFGVFRSMKCR-DVYSYTAMIVGLAIH 404
           +A+ + + M    D   + A++ G  IH
Sbjct: 420 EAYDLIKGMSIEPDSGIWGALLNGCKIH 447


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 173/488 (35%), Positives = 273/488 (55%), Gaps = 8/488 (1%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           PN YTL   LKAC        G  +H   ++     +  V ++L+ +Y+  G I    ++
Sbjct: 104 PNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRV 163

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC--QANLRPDGMILVIVLSAC 232
           F           + +W  ++  Y    +  +A+L F +M   +   +PD      +L AC
Sbjct: 164 F---DGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKAC 220

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           S LG    G ++H  +T + F+ + +  +  AL+DMY+KC  +P A +VF+ +  KNV+ 
Sbjct: 221 SGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQ 280

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W +++ G    GQ  EAL++FRR    G +PD   L  V+   A+   +E G+ VH Y  
Sbjct: 281 WTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGI 340

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K+   TD   GN++VDMY KCG  D+A  +FR M+  +V S+T M+ GL  HG   +A+ 
Sbjct: 341 KDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVA 400

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           +F EM   G+EPDEVT++ +LSACSHAGLV+E  ++F  + R   ++P+ EHY CMVDL 
Sbjct: 401 LFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLL 460

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           GRAG +REA DLI++MP+ P   VW  LL AC++H  V +     + L+  + +    Y+
Sbjct: 461 GRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYV 520

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG---DKSHPKTLE 589
            ++N+ +    W+E  K+R  M+ R +KK  GCS VEV  E + F  G   +++HP+  +
Sbjct: 521 TLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGD 580

Query: 590 IYKLLDEI 597
           I ++L ++
Sbjct: 581 IRRVLRDM 588



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 225/496 (45%), Gaps = 65/496 (13%)

Query: 104 LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYA 163
           + R+ +I GLL          +A  +S SLR G Q+H    K    S+  + N L+ +Y 
Sbjct: 1   MERQKMIAGLL----------RASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYV 50

Query: 164 VCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDG 222
            CG +    ++F   +     R++VSWT L+  +++    T  +    +M  A+   P+ 
Sbjct: 51  KCGELDLACEVFGGMR----DRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNE 106

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
             L   L AC  +GD + G+ IH       +    DV + ++L+ +Y K G I  AR+VF
Sbjct: 107 YTLSASLKACCVVGDTAAGVGIHGLCVRAGYQ-EHDV-VASSLVLVYSKGGRIGDARRVF 164

Query: 283 DEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRM---QGLGLKPDDFTLVCVLNSCANI 338
           D   +   + +WN+M++G  H G  ++AL +FR M   +G   +PD+FT   +L +C+ +
Sbjct: 165 DGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQ-HQPDEFTFASLLKACSGL 223

Query: 339 GWLELGKWVHTYLDKNHINT--DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           G    G  VH  +  +  +T  +  +  ALVDMY KC R+  A  VF  ++ ++V  +TA
Sbjct: 224 GATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTA 283

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG----------- 445
           ++VG A  G+  +AL++F    + G  PD      V+   +   LVE+G           
Sbjct: 284 VVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDP 343

Query: 446 -----------------CKHFLDMSRVYN--LQPQTEHYGCMVDLFGRAGLIREALDLIK 486
                            C    +  R++     P    +  MV+  G+ GL REA+ L +
Sbjct: 344 TGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFE 403

Query: 487 SM---PLVPDAFVWGALLGACKIHAKVE-----LAEIVMENLVRFEPEGDGAYILMTNIY 538
            M    + PD   + ALL AC     V+      + I  +  VR + E    Y  M ++ 
Sbjct: 404 EMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAE---HYACMVDLL 460

Query: 539 SSKNRWKEALKLRKKM 554
                 +EA  L + M
Sbjct: 461 GRAGELREARDLIRTM 476



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 135/316 (42%), Gaps = 25/316 (7%)

Query: 17  NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL-------YDKIISLSR 69
           + F   SLL     L +++   +  Q HA +  +G       IL       Y K   L  
Sbjct: 209 DEFTFASLLKACSGLGATR---EGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPV 265

Query: 70  GNEI-ENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACW 128
             ++ E L  +N  +     ++         EA+ L+R     G  P+++ L  V+    
Sbjct: 266 AMQVFERLERKNV-IQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLA 324

Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
               +  G+QVH Y +K    ++V   N+++ +Y  CGL     ++F   + P    ++V
Sbjct: 325 DFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAP----NVV 380

Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
           SWTT++    K     EA+  F +M    + PD +  + +LSACS  G   L  +  RY 
Sbjct: 381 SWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAG---LVDECRRYF 437

Query: 249 T--DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS-WNSMIAGL-THR- 303
           +       + P    +  ++D+  + G +  AR +   MP++  V  W ++++    H+ 
Sbjct: 438 SCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKD 497

Query: 304 -GQFKEALDIFRRMQG 318
               +EA D+   M G
Sbjct: 498 VAVGREAGDVLLAMDG 513


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 192/548 (35%), Positives = 303/548 (55%), Gaps = 6/548 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           LY K   LS   ++ +       V     I   + N+   EA+A++ ++  +G  P+ + 
Sbjct: 259 LYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFA 318

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
              +L +C    ++  G+QVHA+++K  L S+ YV N+L+ +YA C  +     +F    
Sbjct: 319 CASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFE--- 375

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
              A+ D +S+  +I+ Y ++     AI  F  M   +L+P  +  V +L   S    + 
Sbjct: 376 -ALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIE 434

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           L  +IH  I  +  +L  D++  ++LID+Y K   +  A+ VF+ M  +++V WN+MI G
Sbjct: 435 LSKQIHGLIVKSGTSL--DLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFG 492

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           L    Q +EA+ +F ++Q  GL P++FT V ++   + +  +  G+  H  + K   ++D
Sbjct: 493 LAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSD 552

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             + NAL+DMYAKCG I +   +F S   +DV  + +MI   A HG+A +AL +F  M  
Sbjct: 553 HHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGG 612

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G+EP+ VTFVGVLSAC+HAGLV+EG +HF  M   Y ++P TEHY  +V+LFGR+G + 
Sbjct: 613 TGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLH 672

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
            A + I+ MP+ P A VW +LL AC +   VE+     E  +  +P   G  +LM+NIY+
Sbjct: 673 AAKEFIERMPIEPAAAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYA 732

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
           S+  W +A KLR+ M    V K PG S +EV  E + F    + HP+   IY LLDE+  
Sbjct: 733 SRGLWSDAQKLRQGMDCAGVVKEPGYSWIEVMKEVHTFIARGREHPEADVIYSLLDELTS 792

Query: 600 QSKNHGYI 607
             KN GY+
Sbjct: 793 ILKNGGYL 800



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/397 (33%), Positives = 206/397 (51%), Gaps = 22/397 (5%)

Query: 100 EAIALYR--EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           +A+AL+   +    G  PN + L   L+AC QS+++  GQQVH  +++  L  NVYV   
Sbjct: 95  DAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTA 154

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ LYA  G I A   +F         ++ V+WT +I  Y ++     A+  F  M    
Sbjct: 155 LINLYAKVGCIDAAMLVFD----ALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDG 210

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
           +RPD  +L   +SACS LG L  G + H Y       +  D  + NALID+Y KC  +  
Sbjct: 211 VRPDRFVLASAVSACSALGFLEGGRQTHGYAY--RIAVETDASVINALIDLYCKCSRLSL 268

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           ARK+FD M  +N+VSW +MIAG        EA+ +F ++   G +PD F    +LNSC +
Sbjct: 269 ARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGS 328

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +  +  G+ VH +  K ++ +D ++ N+L+DMYAKC  + +A  VF ++   D  SY AM
Sbjct: 329 LAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAM 388

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           I G +  G    A+D+FS+M    ++P  +TFV +L   S    +E          +++ 
Sbjct: 389 IEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELS-------KQIHG 441

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
           L  ++   G  +DL+  + LI    D+     LV DA
Sbjct: 442 LIVKS---GTSLDLYAGSSLI----DVYSKFSLVEDA 471



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 213/439 (48%), Gaps = 42/439 (9%)

Query: 120 LPYVLKACWQSQSL-RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           L  +L +C     L R+    HA ++ T  L ++++ N L+R Y+  G ++   +LF   
Sbjct: 13  LAQLLLSCLAGDRLHRLLPLAHARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRM 72

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF--FDMCQANLRPDGMILVIVLSACSKLG 236
            H    ++LVSW + I  + +     +A+  F  F        P+  +L   L AC++  
Sbjct: 73  PH----KNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSR 128

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
            +S G ++H         L  +V++  ALI++Y K G I +A  VFD +PVKN V+W ++
Sbjct: 129 AVSFGQQVHGVAV--RIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAV 186

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           I G +  GQ   AL++F +M   G++PD F L   +++C+ +G+LE G+  H Y  +  +
Sbjct: 187 ITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAV 246

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
            TD  + NAL+D+Y KC R+  A  +F  M+ R++ S+T MI G   +    +A+ +F +
Sbjct: 247 ETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQ 306

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEG----------------------------CKH 448
           +SQ G +PD      +L++C     + +G                            C+H
Sbjct: 307 LSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEH 366

Query: 449 FLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGA 503
             +   V+    + +   Y  M++ + R G +  A+D+   M    L P    + +LLG 
Sbjct: 367 LTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGV 426

Query: 504 CKIHAKVELAEIVMENLVR 522
               + +EL++ +   +V+
Sbjct: 427 SSSQSAIELSKQIHGLIVK 445


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 199/583 (34%), Positives = 308/583 (52%), Gaps = 59/583 (10%)

Query: 55  HQTQILYDKIISLSRGNEIEN---LSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIK 111
           H   +   + + L RG++I +     L   + YL        +    L A A  R     
Sbjct: 6   HHHHLRQLQAVLLRRGHQIPSPPTTHLDPDRAYLATIRAAATTPRLVLAACACLRR---T 62

Query: 112 GLLPNTYTLPYVLKACWQSQSLRVG-----QQVHAYSMKTALLSNVYVFNTLMRLYAVCG 166
           GL P     P  L A  +S +  VG     +  HA + +   L + +V   L+  YA CG
Sbjct: 63  GLPPPG---PRALPALLRSAARCVGAGAYVRGAHALAFRVGSLDDGFVRTALVGAYAACG 119

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
            +    K+F       A RD+VSW  ++ +Y +     EA+L F  M  + +  D +IL 
Sbjct: 120 CVGDARKVFD----GMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILA 175

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH----NALIDMYLKCGNIPSARK-- 280
            VLSAC  +  L  G  IH Y+      L  D+ I+    +ALI++Y  C ++  A K  
Sbjct: 176 TVLSACGHIRHLRTGKSIHSYM------LVSDILINAHLSSALINLYASCASMEMAEKLY 229

Query: 281 -----------------------------VFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
                                        +FD MP K+VVSW++MI+G     Q  EAL 
Sbjct: 230 NGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALS 289

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
           +F  MQ  G++PD+ T++ V+++CAN+G L+  KW+H ++  N +N    I NAL+DM+A
Sbjct: 290 LFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFA 349

Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           KCG I+ A  +F  M  ++V ++T+MI   A+HG    AL +F +M   G+EP+EVTF+ 
Sbjct: 350 KCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLN 409

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           +L AC HAGLV EG   F  M + Y ++P+ EHYGCMVDL GRA L++EA++LI+SM L 
Sbjct: 410 LLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLR 469

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P+  VWG+LL AC +H  ++L     + +++ +P  DGA +L++ IY   +   +A ++R
Sbjct: 470 PNVPVWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLSKIYMKSDNLNDAQEVR 529

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
             MK + V K  G S +++   F+EF  G + +P+  +I++ L
Sbjct: 530 DVMKLQGVSKETGLSWMDLNEPFHEFTAGGEKYPENDKIFQKL 572


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 174/456 (38%), Positives = 268/456 (58%), Gaps = 34/456 (7%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           + ++ SW ++I    +     EA+ +F  M + +L+P+       + +CS L DL  G +
Sbjct: 38  KTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQ 97

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL--- 300
            H+      F   PD+F+ +AL+DMY KCG +  AR +FDE+  +N+VSW SMI G    
Sbjct: 98  AHQQALI--FGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 155

Query: 301 --THR--------------------------GQFKEALDIFRRMQGLG-LKPDDFTLVCV 331
              HR                          G   E+++IF RM   G +  +  TL  V
Sbjct: 156 DDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 215

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L +CA+ G   LGK +H  + K  + ++ F+G +++DMY KCG+++ A   F  M+ ++V
Sbjct: 216 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 275

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            S++AM+ G  +HG A +AL++F EM+  G++P+ +TFV VL+ACSHAGL+EEG   F  
Sbjct: 276 KSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKA 335

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           MS  ++++P  EHYGCMVDL GRAG ++EA DLIK M L PD  VWGALLGAC++H  V+
Sbjct: 336 MSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVD 395

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           L EI    L   +P+  G Y+L++NIY+   RW++  ++R  MK   + K PG SLV++ 
Sbjct: 396 LGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIK 455

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           G  + F  GD+ HP+  +IY+ L+++  + +  GY+
Sbjct: 456 GRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYV 491



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 196/436 (44%), Gaps = 54/436 (12%)

Query: 75  NLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133
           N  +    V+ +N +I  L+ + + +EA+  +  M    L PN  T P  +K+C     L
Sbjct: 33  NKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDL 92

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ----------- 182
             G+Q H  ++      +++V + L+ +Y+ CG ++    LF    H             
Sbjct: 93  HSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGY 152

Query: 183 ----------------AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMIL 225
                           A+RD++SW ++I  Y +    TE++  F  M +   +  + + L
Sbjct: 153 VQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTL 212

Query: 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285
             VL AC+  G   LG  IH  +      L  +VF+  ++IDMY KCG +  ARK FD M
Sbjct: 213 SAVLLACAHSGSQRLGKCIHDQVIK--MGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM 270

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG- 344
             KNV SW++M+AG    G  KEAL++F  M   G+KP+  T V VL +C++ G LE G 
Sbjct: 271 REKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGW 330

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAI 403
            W      +  +         +VD+  + G + +AF + + MK R D   + A++    +
Sbjct: 331 HWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRM 390

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           H    K +D+                 G +SA     L  + C +++ +S +Y    + E
Sbjct: 391 H----KNVDL-----------------GEISARKLFELDPKNCGYYVLLSNIYADAGRWE 429

Query: 464 HYGCMVDLFGRAGLIR 479
               M  L   +GL++
Sbjct: 430 DVERMRILMKNSGLVK 445



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 13/292 (4%)

Query: 274 NIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           N P+   +F++   K NV SWNS+IA L   G   EAL  F  M+ L LKP+  T  C +
Sbjct: 24  NNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAI 83

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            SC+ +  L  G+  H          D F+ +ALVDMY+KCG +  A  +F  +  R++ 
Sbjct: 84  KSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIV 143

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+T+MI G   +  A +AL +F  M+    E D +++  +++  +  G+  E  + F  M
Sbjct: 144 SWTSMITGYVQNDDAHRALRVFDGMA----ERDVISWNSIIAVYAQNGMSTESMEIFHRM 199

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREAL---DLIKSMPLVPDAFVWGALLGA-CKIHA 508
            +   +         ++     +G  R      D +  M L  + FV  +++   CK   
Sbjct: 200 VKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKC-G 258

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           KVE+A    +   R   +   ++  M   Y      KEAL++  +M    VK
Sbjct: 259 KVEMARKAFD---RMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVK 307


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 194/554 (35%), Positives = 304/554 (54%), Gaps = 61/554 (11%)

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
           +N++    I+  RE+L+  L+         L  C     ++   Q+H + ++  L  + Y
Sbjct: 34  NNSSTFSEISHQRELLVSSLISK-------LDDCINLNQIK---QIHGHVLRKGLDQSCY 83

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           +   L+R     G+   +         P   R+   WT +I+ Y       EAI  +  M
Sbjct: 84  ILTKLIRTLTKLGV--PMDPYPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCM 141

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH--NALIDMYLK 271
            +  + P       +L AC  +GDL+LG + H       F L    F++  N +IDMY+K
Sbjct: 142 RKEEITPVSFTFSALLKACGSMGDLNLGRQFHA----QTFRLRGFCFVYVGNTMIDMYVK 197

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIA-------------------------------GL 300
           CG+I  ARKVFDEMP ++V+SW  +IA                               G 
Sbjct: 198 CGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGF 257

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV------HTYLDKN 354
               + +EAL+ F RM+  G++ D+ T+   +++CA +G  +             Y   +
Sbjct: 258 AQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSD 317

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
           H+     IG+AL+DMY+KCG +++A  VF SM  ++V+SY++MI+GLA HG+A +ALD+F
Sbjct: 318 HV----VIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLF 373

Query: 415 SEM-SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473
             M +Q  I+P+ VTFVG L+ACSH+GLV++G + F  M + + ++P  +HY CMVDL G
Sbjct: 374 HYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLG 433

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
           RAG ++EAL+LIK+M + P   VWGALLGAC+IH   ++AEI  E+L   EP+  G YIL
Sbjct: 434 RAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYIL 493

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS-LVEVYGEFYEFRKGDKSHPKTLEIYK 592
           ++N+YSS   W   L +RK +KE+ +KKTP  S +V+  G+ ++F  G+ +HP + +I  
Sbjct: 494 LSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSKKIQD 553

Query: 593 LLDEIMHQSKNHGY 606
            L+E++ +    GY
Sbjct: 554 KLEELVERLTALGY 567



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 208/449 (46%), Gaps = 73/449 (16%)

Query: 14  NDINTFQQLS----LLHQS--PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL 67
           N+ +TF ++S    LL  S   +L+   ++ Q+KQ H  +++ G  Q    IL   I +L
Sbjct: 34  NNSSTFSEISHQRELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQ-SCYILTKLIRTL 92

Query: 68  SR---------GNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNT 117
           ++            IE +  +NP  +L+  +I+  +      EAIA+Y  M  + + P +
Sbjct: 93  TKLGVPMDPYPRRVIEPVQFRNP--FLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVS 150

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
           +T   +LKAC     L +G+Q HA + +      VYV NT++ +Y  CG I    K+F  
Sbjct: 151 FTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVF-- 208

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMD-------------------------------YPTEA 206
                 +RD++SWT LI AY ++                                 P EA
Sbjct: 209 --DEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEA 266

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F  M ++ +R D + +   +SAC++LG      +  +    + ++ S  V I +ALI
Sbjct: 267 LEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALI 326

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDD 325
           DMY KCGN+  A  VF  M  KNV S++SMI GL   G+ +EALD+F  M     +KP+ 
Sbjct: 327 DMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNT 386

Query: 326 FTLVCVLNSCANIGWLELGKWVHTYLDKN---HINTDGFIGNALVDMYAKCGRIDQAFGV 382
            T V  L +C++ G ++ G+ V   + +        D +    +VD+  + GR+ +A  +
Sbjct: 387 VTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHY--TCMVDLLGRAGRLQEALEL 444

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            ++M                 HG  W AL
Sbjct: 445 IKTMSVEP-------------HGGVWGAL 460


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 202/571 (35%), Positives = 322/571 (56%), Gaps = 11/571 (1%)

Query: 42  QFHAFIIKTG---SPQHQTQI--LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA 96
           Q H  +I +G    PQ    +  +Y K  +L    ++ N   Q   V     I   + N 
Sbjct: 267 QVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNG 326

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
              EA  L+  M+  G+ P++ T    L +  +S SLR  ++VH+Y ++  +  +VY+ +
Sbjct: 327 FTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKS 386

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
            L+ +Y   G ++   K+F          D+   T +I  YV      +AI +F  + Q 
Sbjct: 387 ALIDIYFKGGDVEMARKIFQ----QNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQE 442

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
            + P+ + +  VL AC+ L  L LG ++H  I      L   V + +A+ DMY KCG + 
Sbjct: 443 GMVPNSLTMASVLPACAALAALKLGKELHCDILKKQ--LENIVNVGSAITDMYAKCGRLD 500

Query: 277 SARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCA 336
            A + F  M   + + WNSMI+  +  G+ + A+D+FR+M   G K D  +L   L+S A
Sbjct: 501 LAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAA 560

Query: 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396
           N+  L  GK +H Y+ +N  ++D F+ +AL+DMY+KCG++  A  VF  M  ++  S+ +
Sbjct: 561 NLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNS 620

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +I     HG A + LD+F EM + G+ PD VTF+ ++SAC HAGLV EG  +F  M+R Y
Sbjct: 621 IIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREY 680

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            +  + EHY CMVDL+GRAG + EA D IKSMP  PDA VWG LLGAC++H  VELA++ 
Sbjct: 681 GIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLA 740

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
             +L+  +P+  G Y+L++N+++    W   LK+R+ MKE+ V+K PG S ++V G  + 
Sbjct: 741 SRHLLELDPKNSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQKIPGYSWIDVNGGTHM 800

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           F   + +HP+++EIY +L+ ++ + +  GY+
Sbjct: 801 FSAAEGNHPESVEIYLILNSLLLELRKQGYV 831



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/417 (29%), Positives = 205/417 (49%), Gaps = 16/417 (3%)

Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
           A+  Y +ML   + P+ YT PYV+KAC    ++ +   VH  +       +++V + L++
Sbjct: 129 ALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIK 188

Query: 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220
           LYA  G I    ++F        QRD + W  ++  YVK      A+ +F  M  +    
Sbjct: 189 LYADNGYICDARRVF----DELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMV 244

Query: 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK 280
           + +    +LS C+  G   LG ++H  +  + F   P V   N L+ MY KCGN+  ARK
Sbjct: 245 NSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQV--ANTLVAMYSKCGNLFDARK 302

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           +F+ MP  + V+WN +IAG    G   EA  +F  M   G+KPD  T    L S    G 
Sbjct: 303 LFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGS 362

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L   K VH+Y+ ++ +  D ++ +AL+D+Y K G ++ A  +F+     DV   TAMI G
Sbjct: 363 LRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISG 422

Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
             +HG    A++ F  + Q G+ P+ +T   VL AC+    ++ G +   D+     L+ 
Sbjct: 423 YVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDI-----LKK 477

Query: 461 QTEHY----GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           Q E+       + D++ + G +  A +  + M    D+  W +++ +   + K E+A
Sbjct: 478 QLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSET-DSICWNSMISSFSQNGKPEMA 533



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 183/409 (44%), Gaps = 11/409 (2%)

Query: 117 TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFH 176
           T  L  + +AC  +  ++  +QVH   +   +     + + ++ LY +CG I     LF 
Sbjct: 44  TTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFF 103

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
             +   A    + W  +I+    + +   A+L +F M  +N+ PD      V+ AC  L 
Sbjct: 104 GLELCNA----LPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLN 159

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           ++ L + +H   T        D+F+ +ALI +Y   G I  AR+VFDE+P ++ + WN M
Sbjct: 160 NVPLCMVVHN--TARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVM 217

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           + G    G F  A+  F  M+      +  T  C+L+ CA  G   LG  VH  +  +  
Sbjct: 218 LHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGF 277

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
             D  + N LV MY+KCG +  A  +F +M   D  ++  +I G   +G   +A  +F+ 
Sbjct: 278 EFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNA 337

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M   G++PD VTF   L +   +G +   CK        + +         ++D++ + G
Sbjct: 338 MISAGVKPDSVTFASFLPSILESGSLRH-CKEVHSYIVRHRVPFDVYLKSALIDIYFKGG 396

Query: 477 LIREALDLIKSMPLVP----DAFVWGALLGACKIHAKVELAEIVMENLV 521
            +  A  + +   LV      A + G +L    I A      ++ E +V
Sbjct: 397 DVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMV 445


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 172/476 (36%), Positives = 274/476 (57%), Gaps = 7/476 (1%)

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           LR  QQVHA+ + + L  +  +   L+ L    G I    +LF    +P    D   + +
Sbjct: 104 LRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNP----DSFLFDS 159

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           L++   K  +  + +L +  M  +           V+ AC+ L  L LG +IH ++    
Sbjct: 160 LLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCG 219

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           +    D+++  ALI +Y K  ++  A+KVFD MP + +++WNS+I+G    G  +E++ +
Sbjct: 220 YG--SDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGL 277

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F  M   G +PD  T+V +L+SC+ +G L+ G W+H Y D N  + +  +G +L++MY +
Sbjct: 278 FHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTR 337

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           CG + +A  VF SMK R+V ++TAMI G  +HG   +A+++F+EM   G  P+ +TFV V
Sbjct: 338 CGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAV 397

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS-MPLV 491
           LSAC+H+GL+++G + F  M   Y L P  EH  CMVD+FGRAGL+ +A   IK  +P  
Sbjct: 398 LSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKE 457

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P   VW ++LGAC++H   +L   V E+++  EPE  G Y++++NIY+   R      +R
Sbjct: 458 PGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVR 517

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             M  R++KK  G S +E+  + Y F  GDKSHP+T  IY+ LDE+M +    GY+
Sbjct: 518 NMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYV 573



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 204/366 (55%), Gaps = 22/366 (6%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL--SRGNEIENLSL-- 78
           +LL   PRL +      L+Q HA II +G   H+++ L  K+ISL  + G+      L  
Sbjct: 96  ALLRSGPRLRN------LQQVHAHIIVSG--LHRSRSLLTKLISLVCTAGSITYARRLFP 147

Query: 79  --QNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
              NP  +L++ +++  S     ++ +  YR ML  G   + YT   V+KAC    +LR+
Sbjct: 148 TVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRL 207

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G+++H++ M     S++YV   L+ LYA    +K   K+F        QR +++W +LI 
Sbjct: 208 GKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVF----DAMPQRTIIAWNSLIS 263

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            Y +   P E+I  F  M ++  +PD   +V +LS+CS+LG L  G  +H Y   N F+L
Sbjct: 264 GYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDL 323

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             +V +  +LI+MY +CGN+  AR+VFD M  +NVV+W +MI+G    G  ++A+++F  
Sbjct: 324 --NVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTE 381

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA-LVDMYAKCG 374
           M+  G +P++ T V VL++CA+ G ++ G+ V + + + +    G   N  +VDM+ + G
Sbjct: 382 MRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAG 441

Query: 375 RIDQAF 380
            ++ A+
Sbjct: 442 LLNDAY 447


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 171/476 (35%), Positives = 281/476 (59%), Gaps = 11/476 (2%)

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
             P+ ++ L+ +ML  G+ PN +TL  V+KAC +   L++G+  H   +     SN  + 
Sbjct: 199 GKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIA 258

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           + L+ ++     +    +LF     P    D + WT++I A  + D+  EA+  F+ M +
Sbjct: 259 SALIDMHGRNCALDDARQLFDELLEP----DAICWTSIISALTRNDFFDEALRFFYSMQR 314

Query: 216 AN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
            + + PDG     VL+AC  LG L  G ++H  +    F    +V + ++L+DMY KCG+
Sbjct: 315 DHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGF--CGNVVVESSLVDMYGKCGS 372

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  ++++FD MP+KN VSW++++ G    G FK  + IFR+M+    K D +    +L +
Sbjct: 373 VGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRT 428

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA +  +  GK VH    +     D  + +ALVD+YAKCG I+ A  +F  M  R++ ++
Sbjct: 429 CAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITW 488

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
            +MI G A +G+  +AL IF++M + GI+PD ++F+G+L ACSH GLV+EG ++F+ M++
Sbjct: 489 NSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTK 548

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
            Y ++   EHY CMVDL GRAGL+ EA  LI++     D+ +W ALLGAC      E+AE
Sbjct: 549 DYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAE 608

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
            + + ++  EP+   +Y+L+ N+Y +  RW +AL++R+ MK+R V K PG S +E 
Sbjct: 609 RIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIET 664



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 201/407 (49%), Gaps = 24/407 (5%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL-IKAVHKLFHFRQHP 181
           +L+ C +  +   G Q+HA+ +K+ L  + +V N+L+ LY   G       K+F      
Sbjct: 124 LLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFD----G 179

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
              +D++SWT++I  YV++  P  ++  F+ M    + P+   L  V+ ACS+LGDL LG
Sbjct: 180 LFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLG 239

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
              H  +    F+   +  I +ALIDM+ +   +  AR++FDE+   + + W S+I+ LT
Sbjct: 240 RIFHGVVLGRGFD--SNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALT 297

Query: 302 HRGQFKEALDIFRRMQ-GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
               F EAL  F  MQ   G+ PD FT   VL +C N+G L+ GK VH       + T G
Sbjct: 298 RNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHA-----KVITTG 352

Query: 361 FIGN-----ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415
           F GN     +LVDMY KCG + ++  +F  M  ++  S++A++ G   +G     + IF 
Sbjct: 353 FCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFR 412

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475
           +M +V    D   F  +L  C+    V +G +      R    +        +VDL+ + 
Sbjct: 413 KMEKV----DLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVE-SALVDLYAKC 467

Query: 476 GLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
           G I  A  +   MP V +   W +++G    + + E A  +   +V+
Sbjct: 468 GCIEYAQTIFDQMP-VRNLITWNSMIGGFAQNGRGEEALRIFNQMVK 513



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 100/211 (47%), Gaps = 5/211 (2%)

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           S I  L   G+   AL + + +    +         +L +C  +     G  +H ++ K+
Sbjct: 88  SKILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKS 147

Query: 355 HINTDGFIGNALVDMYAKCGR-IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
            +  D F+GN+L+ +Y K G    +   VF  +  +DV S+T+MI G    GK   +L++
Sbjct: 148 GLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLEL 207

Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           F +M   G+EP+  T   V+ ACS  G ++ G   H + + R ++          ++D+ 
Sbjct: 208 FWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIAS--ALIDMH 265

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           GR   + +A  L   + L PDA  W +++ A
Sbjct: 266 GRNCALDDARQLFDEL-LEPDAICWTSIISA 295


>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 517

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 182/498 (36%), Positives = 278/498 (55%), Gaps = 17/498 (3%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           +S  NP +AI  Y EM   G   + +T P +LKA     S  +G  +H  +MKT    + 
Sbjct: 30  VSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAMKTGFSGHC 89

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
           +V   L+ +Y+  G I    K+F         +D+V W +++ AY        A+  F +
Sbjct: 90  FVGTALLDMYSAFGAIDHATKVFE----EMGVKDVVVWNSMLAAYASCGQMDNAMKLFDN 145

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M   +L        I++S  +K+G  +    I   I       + D+   N++I      
Sbjct: 146 MPLKDLAS----FNIMISGYAKIGKKAAARSIFDRIH------AKDIVSWNSMILACTNV 195

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G++ +AR +FD MP KNV++WN+MI+G  H   + EA+D+F  M+    + D  T+  VL
Sbjct: 196 GDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVL 255

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           ++CA++GWL  G  +H Y   + + +   +  +L+DMYAKCG I ++  VF   + +D+Y
Sbjct: 256 SACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIY 315

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            + A+I GLA+HG    A+ +  +M   G+ PDE+TF+G+LSACSH  LV+EGC+ F  M
Sbjct: 316 CWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCM 375

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
            + + L P+ EHYGCMVDL GRAG +  A  LIK+MP  P   + GALLGAC IH  +E 
Sbjct: 376 EKEFGLPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLET 435

Query: 513 AEIVMENLVRFEPE--GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
            E V+ NL+  +     DG +++  N+Y+S  +WKEA + R++M E  + KT G S +EV
Sbjct: 436 GEKVI-NLITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRERMNESGIAKTAGGSTIEV 494

Query: 571 YGEFYEFRKGDKSHPKTL 588
            G+FY F  GD S  + L
Sbjct: 495 DGKFYRFLAGDISMDQDL 512



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 62/125 (49%)

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WN +I     +G   +A+  +  M+ +G   D+FT   +L + +++    +G  +H    
Sbjct: 22  WNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAM 81

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K   +   F+G AL+DMY+  G ID A  VF  M  +DV  + +M+   A  G+   A+ 
Sbjct: 82  KTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMK 141

Query: 413 IFSEM 417
           +F  M
Sbjct: 142 LFDNM 146


>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
 gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
            Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
            multiple PPR PF|01535 repeats. ESTs gb|AV565358,
            gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
            thaliana]
 gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
          Length = 1322

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 182/532 (34%), Positives = 302/532 (56%), Gaps = 49/532 (9%)

Query: 78   LQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
            +Q P V++YN + +  ++ ++P+ ++ LY  ML   + P++YT   ++KA   S + R G
Sbjct: 831  MQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKA--SSFASRFG 888

Query: 137  QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            + + A+  K     +V +  TL+  Y+  G I+   K+F        +RD ++WTT++ A
Sbjct: 889  ESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFD----EMPERDDIAWTTMVSA 944

Query: 197  YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            Y ++           DM  AN   + M                                 
Sbjct: 945  YRRV----------LDMDSANSLANQMS-------------------------------E 963

Query: 257  PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
             +    N LI+ Y+  GN+  A  +F++MPVK+++SW +MI G +   +++EA+ +F +M
Sbjct: 964  KNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKM 1023

Query: 317  QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
               G+ PD+ T+  V+++CA++G LE+GK VH Y  +N    D +IG+ALVDMY+KCG +
Sbjct: 1024 MEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSL 1083

Query: 377  DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
            ++A  VF ++  ++++ + ++I GLA HG A +AL +F++M    ++P+ VTFV V +AC
Sbjct: 1084 ERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTAC 1143

Query: 437  SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
            +HAGLV+EG + +  M   Y++    EHYG MV LF +AGLI EAL+LI +M   P+A +
Sbjct: 1144 THAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVI 1203

Query: 497  WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
            WGALL  C+IH  + +AEI    L+  EP   G Y L+ ++Y+ +NRW++  ++R +M+E
Sbjct: 1204 WGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRE 1263

Query: 557  RKVKKT-PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
              ++K  PG S + +    + F   DKSH  + E+  LLDEI  Q    GY+
Sbjct: 1264 LGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEVCLLLDEIYDQMGLAGYV 1315



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 90/236 (38%), Gaps = 34/236 (14%)

Query: 353  KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
            K  +N D  + N  +       R+D A      M+  +V+ Y A+  G        ++L+
Sbjct: 798  KTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLE 857

Query: 413  IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDL 471
            ++  M +  + P   T+  ++ A S A    E  + H       ++++ QT     ++D 
Sbjct: 858  LYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKFGFGFHVKIQT----TLIDF 913

Query: 472  FGRAGLIREALDLIKSMPLVPDAFVWGALLGA--------------------------CK 505
            +   G IREA  +   MP   D   W  ++ A                          C 
Sbjct: 914  YSATGRIREARKVFDEMP-ERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCL 972

Query: 506  IHAKVELAEIVM-ENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
            I+  + L  +   E+L    P  D  ++  M   YS   R++EA+ +  KM E  +
Sbjct: 973  INGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGI 1028


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 162/387 (41%), Positives = 240/387 (62%), Gaps = 33/387 (8%)

Query: 253 FNLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF---- 306
           F+ +P  DVF+ N ++  Y+  G +  ARKVFD M  +++VSWN+MI G   RG      
Sbjct: 108 FDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAR 167

Query: 307 ---------------------------KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
                                      KEAL+++R M+  G+ PD  ++V VL++C+ +G
Sbjct: 168 EIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMG 227

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L +G  VH +++ N +  D  +G ALVDMYAKCG I+ +  VF +M  +DV ++++MI+
Sbjct: 228 ALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMII 287

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           GLA HG    AL +FSEM   G++P+E+TF+GVL AC+H GLV +G K+F  MS V+ + 
Sbjct: 288 GLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVV 347

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P+ EHYGCMVDL GRAG + EA++LI+SM   PD  +W  LLGAC+IH  VE+AE  M  
Sbjct: 348 PRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAK 407

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L   +P  DG Y+L++NIY+  N W+   ++RK ++   +++ PG S +E     +EF  
Sbjct: 408 LKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVS 467

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           GD+SHP+  EIYK+L+E+M + +  GY
Sbjct: 468 GDRSHPRIEEIYKMLEEMMDRLRQAGY 494



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 104/201 (51%), Gaps = 6/201 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+REM + G+ P+  ++  VL AC    +L +G +VH +     +  ++ +   L+
Sbjct: 196 EALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALV 255

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I+   K+F    H    +D+++W+++I          +A+  F +M    L+
Sbjct: 256 DMYAKCGDIENSLKVF----HAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQ 311

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  + VL AC+ +G ++ G K    ++D H  + P +  +  ++D+  + G++  A 
Sbjct: 312 PNEITFIGVLIACTHVGLVNDGKKYFSSMSDVH-GVVPRMEHYGCMVDLLGRAGHVEEAM 370

Query: 280 KVFDEMPVK-NVVSWNSMIAG 299
           ++   M  K + + W +++  
Sbjct: 371 ELIRSMTFKPDPIIWRTLLGA 391


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 189/521 (36%), Positives = 297/521 (57%), Gaps = 33/521 (6%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           + + +Y +M   G+ P+ +  P ++K+         G   HA+ +K    S+ +V N ++
Sbjct: 13  KVVLMYEQMQGCGVRPDAFVYPILIKSAGTG-----GIGFHAHVLKLGHGSDAFVRNAVI 67

Query: 160 RLYA--VCGLIKAVHKLFHFRQHPQAQ--------RDLVSWTTLIQAYVKMDYPTEAILS 209
            +YA  V      V   + +    QAQ        R++++WT ++  Y K+    EA   
Sbjct: 68  DMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVK-DLEAARR 126

Query: 210 FFDMCQANLRPDGMILV--IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
           +FD C     P+  ++    +LS  ++ G     +++     D       +    NA+I 
Sbjct: 127 YFD-CM----PERSVVSWNAMLSGYAQNGLAEEALRLF----DEMLGAYRNSVTWNAMIS 177

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGLGLKPDDF 326
            Y++ G++ SARK+F+ MP +NVV+WNSMIAG    GQ   A+++F+ M     L PD+ 
Sbjct: 178 AYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEV 237

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T+V V+++C ++G LELG WV  +L +N I       NA++ MY++CG ++ A  VF+ M
Sbjct: 238 TMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 297

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
             RDV SY  +I G A HG   +A+++ S M + GIEPD VTF+GVL+ACSHAGL+EEG 
Sbjct: 298 ATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGR 357

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           K F  +       P  +HY CMVDL GR G + +A   ++ MP+ P A V+G+LL A +I
Sbjct: 358 KVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRI 412

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H +VEL E+    L   EP+  G +IL++NIY+S  RWK+  ++R+ MK+  VKKT G S
Sbjct: 413 HKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWS 472

Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            VE  G+ ++F   D+SH ++ +IY+LL E+  + +  GYI
Sbjct: 473 WVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYI 513


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 173/449 (38%), Positives = 270/449 (60%), Gaps = 9/449 (2%)

Query: 163 AVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE--AILSFFDMCQAN-LR 219
           +V G +     +FH   +PQ      +W ++I+ + +   P +  AI+ +  M  A+  R
Sbjct: 443 SVSGSLAYAQLVFHRIHNPQTP----AWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHAR 498

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD      +L AC +  +     ++H +I    F    DV +   LI  Y   G I +A 
Sbjct: 499 PDTYTFSFLLKACEEAKEEGKCREVHGFII--RFGYDQDVVLCTNLIRSYAGNGLIETAH 556

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVF+EMP +++VSWNSMI+     G  +EAL ++ +M+   +  D FTLV +L+SCA++G
Sbjct: 557 KVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVG 616

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L +G  +H +  +  +  + F+GNAL+DMYAKCG +  A  +F SM  RDV+++ +MIV
Sbjct: 617 ALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIV 676

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G  +HG+  +A+  F  M   G+ P+ +TF+G+L  CSH GLV+EG ++F  MS  +NL+
Sbjct: 677 GYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLK 736

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  +HYGCMVDLFGRAG ++EAL++I+S P   D  +W  LLG+CKIH  VE+ E+ M N
Sbjct: 737 PGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRN 796

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           LV+    G G  +L++ IY+     +   ++RK ++ R +K TPG S +EV  + + F  
Sbjct: 797 LVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVV 856

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
            DKSHP + EIY+ L+E++H++   GY +
Sbjct: 857 DDKSHPDSREIYRKLEEVIHRASLVGYAM 885



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 175/313 (55%), Gaps = 11/313 (3%)

Query: 78  LQNPQVYLYNFIIQCLSNA-NPLE--AIALYREMLIKG-LLPNTYTLPYVLKACWQSQSL 133
           + NPQ   +N +I+  S + +PL+  AI  Y  ML      P+TYT  ++LKAC +++  
Sbjct: 458 IHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEE 517

Query: 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
              ++VH + ++     +V +   L+R YA  GLI+  HK+F         RDLVSW ++
Sbjct: 518 GKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVF----EEMPARDLVSWNSM 573

Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           I  Y +     EA+  +  M  +N+  DG  LV +LS+C+ +G L +G+++HR+  +   
Sbjct: 574 ISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERR- 632

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            L  ++F+ NALIDMY KCG++ SA  +F+ MP ++V +WNSMI G    G+  EA+  F
Sbjct: 633 -LVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFF 691

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAK 372
             M   G++P+  T + +L  C++ G ++ G ++ H    + ++         +VD++ +
Sbjct: 692 GSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGR 751

Query: 373 CGRIDQAFGVFRS 385
            G++ +A  V RS
Sbjct: 752 AGKLKEALEVIRS 764



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 168/371 (45%), Gaps = 62/371 (16%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLS------LQNPQVYL 85
           E +K  G+ ++ H FII+ G    Q  +L   +I    GN +   +      +    +  
Sbjct: 512 EEAKEEGKCREVHGFIIRFG--YDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVS 569

Query: 86  YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I C        EA+ +Y +M I  +  + +TL  +L +C    +L +G Q+H ++ 
Sbjct: 570 WNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAG 629

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           +  L+ N++V N L+ +YA CG + +   +F    +   +RD+ +W ++I  Y       
Sbjct: 630 ERRLVENIFVGNALIDMYAKCGSLASALSIF----NSMPKRDVFTWNSMIVGYGVHGRGD 685

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EAI  F  M  A +RP+ +  + +L  CS  G +  G++ + ++  + FNL P +  +  
Sbjct: 686 EAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQ-YFHMMSSEFNLKPGIKHYGC 744

Query: 265 LIDMYLKCGNIPSARKV---------------------------FDEMPVKNVVSWNSMI 297
           ++D++ + G +  A +V                             EM ++N+V   S+ 
Sbjct: 745 MVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLG 804

Query: 298 AG--LTHRGQFKEALDI-----FRRM-QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           AG  +   G + EA D+      R++ Q  G+K           +     W+E+G  VH 
Sbjct: 805 AGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIK-----------TTPGWSWIEVGDQVHR 853

Query: 350 YL--DKNHINT 358
           ++  DK+H ++
Sbjct: 854 FVVDDKSHPDS 864


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 171/471 (36%), Positives = 275/471 (58%), Gaps = 7/471 (1%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +QVHA+ +    L ++ + N L+  YA    I   + LF         RD  +W+ ++  
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFD----GLTMRDSKTWSVMVGG 75

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           + K         +F ++ +  + PD   L  V+  C    DL +G  IH  +  +   L 
Sbjct: 76  FAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKH--GLL 133

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            D F+  +L+DMY KC  +  A+++F+ M  K++V+W  MI        + E+L +F RM
Sbjct: 134 SDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAY-ESLVLFDRM 192

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +  G+ PD   +V V+N+CA +G +   ++ + Y+ +N  + D  +G A++DMYAKCG +
Sbjct: 193 REEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSV 252

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           + A  VF  MK ++V S++AMI     HG+   A+D+F  M    I P+ VTFV +L AC
Sbjct: 253 ESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYAC 312

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           SHAGL+EEG + F  M   + ++P  +HY CMVDL GRAG + EAL LI++M +  D  +
Sbjct: 313 SHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERL 372

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           W ALLGAC+IH+K+ELAE    +L+  +P+  G Y+L++NIY+   +W++  K R  M +
Sbjct: 373 WSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQ 432

Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           RK+KK PG + +EV  + Y+F  GD+SHP++ EIY++L  ++ + +  GY+
Sbjct: 433 RKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYV 483



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 214/386 (55%), Gaps = 28/386 (7%)

Query: 35  KSVGQLKQFHAFIIKTGSPQH---QTQILY--------DKIISLSRGNEIENLSLQNPQV 83
           ++V  ++Q HA ++  G+ Q      ++LY        D   SL  G     L++++ + 
Sbjct: 14  RNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDG-----LTMRDSKT 68

Query: 84  YLYNFIIQCLSNANPLEAI-ALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
           +  + ++   + A       A +RE+L  G+ P+ YTLP+V++ C     L++G+ +H  
Sbjct: 69  W--SVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDV 126

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +K  LLS+ +V  +L+ +YA C +++   +LF         +DLV+WT +I AY   + 
Sbjct: 127 VLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLF----ERMLSKDLVTWTVMIGAYADCN- 181

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
             E+++ F  M +  + PD + +V V++AC+KLG +      + YI  N F+L  DV + 
Sbjct: 182 AYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSL--DVILG 239

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
            A+IDMY KCG++ SAR+VFD M  KNV+SW++MIA   + G+ K+A+D+F  M    + 
Sbjct: 240 TAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAIL 299

Query: 323 PDDFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           P+  T V +L +C++ G +E G ++ ++  +++ +  D      +VD+  + GR+D+A  
Sbjct: 300 PNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALR 359

Query: 382 VFRSMKC-RDVYSYTAMIVGLAIHGK 406
           +  +M   +D   ++A++    IH K
Sbjct: 360 LIEAMTVEKDERLWSALLGACRIHSK 385


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/580 (31%), Positives = 313/580 (53%), Gaps = 42/580 (7%)

Query: 53  PQH-----QTQILYDKIISLSRGNEIENL--SLQNPQVYLYNFIIQCLSN-ANPLEAIAL 104
           PQH     +T+ L+D +   S      +L  ++  P   L   +I  LS   +  E +  
Sbjct: 13  PQHLAGLLKTRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDA 72

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           +  +  +G       +P V+K+C    + R G+QVH +++   LL +++V   L+  YA 
Sbjct: 73  FSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAK 132

Query: 165 CGLIKAVHKLFHFRQHP-----------------------------QAQRDLVSWTTLIQ 195
            G +    K+F   + P                               +R   SW ++I 
Sbjct: 133 NGDMDCAVKVFD--EMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIA 190

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            Y       EA+  F  M     RP+ + +  + S C+K GDL  G      I +     
Sbjct: 191 CYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQ- 249

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             ++ +H AL++MY+KC  I  AR+ FD M  ++VV+W++MIAG    G+  E+L++F R
Sbjct: 250 --NMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFER 307

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+    KP++ TLV VL++CA +G  ELG  + ++++  ++    ++G+AL+DMY KCG 
Sbjct: 308 MKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGH 367

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           + +A  VF  M+ + V ++ +M+ GLA++G A  A+ ++ EM++  ++P+E+TFV +L+A
Sbjct: 368 VGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTA 427

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           C+HAGLV++G   F +M  ++++ PQ EH  C+VDL  ++G +REA   I  M + P+A 
Sbjct: 428 CTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAV 487

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           +W  LL AC+ HA VELA++    L+  EP+    Y+L++NIY+    W +  ++R  M+
Sbjct: 488 IWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMR 547

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
            + V+K    S +E+ GE ++F   D  HPK+ EI+ ++D
Sbjct: 548 SKNVQKLSAYSWIELDGEVHKFLVQDTYHPKSAEIFNVVD 587


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/545 (33%), Positives = 297/545 (54%), Gaps = 7/545 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K+  L+    I  L+     V     I   + N   + A+  + +ML   + PN +T
Sbjct: 51  MYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFT 110

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
            P VLKA    +    G+Q+HA ++K  L+++V+V  ++  +Y+  G +   +K+F    
Sbjct: 111 FPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMP 170

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
           H    R+L +W   I   V    P +++++F ++ +   +PD +     L+ACS    L 
Sbjct: 171 H----RNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGLG 226

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G ++H +I  + +    +V + N LID Y KCG +  +  VFD M  +N VSW+S+IA 
Sbjct: 227 PGCQLHGFIIRSGYG--QNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAA 284

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
                + ++A  +F R +   ++P DF +  VL +CA +  +E G+ V     K  +  +
Sbjct: 285 YVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQN 344

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-S 418
            F+ +ALVDMY KCG ID A   F +M  R++ S+ A++ G A  G A KA+ +  EM S
Sbjct: 345 IFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTS 404

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             GI P  V+ +  LSACS AG ++ G K F  M   Y ++P  EHY C+VDL GRAG++
Sbjct: 405 AAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMV 464

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
             A D IK MP  P   +WGALLGAC++H K EL ++  E L   +P+  G +++++N++
Sbjct: 465 ECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMF 524

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           ++  RW+E   +R +MKE  +KK  G S + V    + F+  DKSH K  EI  +L ++ 
Sbjct: 525 AATGRWEEVTVVRNEMKEVGIKKGAGFSWITVDSRIHMFQAKDKSHEKDPEIQDILGKLR 584

Query: 599 HQSKN 603
            + ++
Sbjct: 585 KEMQD 589



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
            F++N L++MY K  ++ SA+ + +  P ++VV+W ++IAG    G F  AL  F  M  
Sbjct: 42  AFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLS 101

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
             ++P+DFT  CVL +   +     GK +H    K  +  D F+G ++ DMY+K G ++ 
Sbjct: 102 DCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLND 161

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A+ VF  M  R++ ++ A I    +HG+   ++  F E+ +VG +PD +TF   L+ACS 
Sbjct: 162 AYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSD 221

Query: 439 AGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
              +  GC+ H   +   Y       +   ++D +G+ G + E  +++       ++  W
Sbjct: 222 KLGLGPGCQLHGFIIRSGYGQNVSVSNG--LIDFYGKCGEV-ECSEMVFDRMGERNSVSW 278

Query: 498 GALLGA 503
            +L+ A
Sbjct: 279 SSLIAA 284


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/527 (35%), Positives = 281/527 (53%), Gaps = 45/527 (8%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           ++PNT T       C + + L+   Q+HA  +KT L+ + Y     +     C +     
Sbjct: 45  MMPNTET------RCSKQEELK---QIHARMLKTGLIQDSYAITKFLS----CCISSTSS 91

Query: 173 KLFHFRQ---HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVL 229
               + Q       + D   W  +I+ +   D P  ++L +  M   +   +      +L
Sbjct: 92  DFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLL 151

Query: 230 SACSKLGDLSLGIKIHRYITD--------------------NHFNLS---------PDVF 260
            ACS L  L    +IH  IT                      +F L+         PD  
Sbjct: 152 KACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAV 211

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
             N++I  Y K G +  A  +F +M  KN +SW +MI+G    G  KEAL +F  MQ   
Sbjct: 212 SWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSD 271

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           ++PD+ +L   L++CA +G LE GKW+H+YL K  I  D  +G  L+DMYAKCG + +A 
Sbjct: 272 VEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEAL 331

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF++++ + V ++TA+I G A HG   +A+  F EM ++GI+P+ +TF  VL+ACS+ G
Sbjct: 332 EVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTG 391

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LVEEG   F +M R YNL+P  EHYGC+VDL  RAGL+ EA   I+ MPL P+A +WGAL
Sbjct: 392 LVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGAL 451

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           L AC+IH  +EL E + E L+  +P   G Y+   NI++   +W +A + R+ MKE+ V 
Sbjct: 452 LKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVA 511

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           K PGCS + + G  +EF  GD+SHP+  +I      +  + + +GY+
Sbjct: 512 KVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYV 558



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 207/425 (48%), Gaps = 45/425 (10%)

Query: 39  QLKQFHAFIIKTGSPQHQ---TQILYDKIISLSRG----NEIENLSLQNPQVYLYNFIIQ 91
           +LKQ HA ++KTG  Q     T+ L   I S S       +I       P  +L+N +I+
Sbjct: 58  ELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIR 117

Query: 92  CLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
             S ++ P  ++ LY+ ML      N YT P +LKAC    +L    Q+HA   K    +
Sbjct: 118 GFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYEN 177

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA--------------------------- 183
           +VY  N+L+  YA  G  K  H LF     P A                           
Sbjct: 178 DVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMV 237

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           +++ +SWTT+I  YV+     EA+  F +M  +++ PD + L   LSAC++LG L  G  
Sbjct: 238 EKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKW 297

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303
           IH Y+T     +  D  +   LIDMY KCG++  A +VF  +  K+V +W ++I+G  + 
Sbjct: 298 IHSYLTKTRIRM--DSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYH 355

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
           G  +EA+  F  MQ +G+KP+  T   VL +C+  G +E GK +   +++++ N    I 
Sbjct: 356 GHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDY-NLKPTIE 414

Query: 364 N--ALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
           +   +VD+ ++ G +D+A    + M  + +   + A++    IH    K +++  E+ ++
Sbjct: 415 HYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH----KNIELGEEIGEI 470

Query: 421 GIEPD 425
            I  D
Sbjct: 471 LIAID 475


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 173/488 (35%), Positives = 273/488 (55%), Gaps = 8/488 (1%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKL 174
           PN YTL   LKAC        G  +H   ++     +  V ++L+ +Y+  G I    ++
Sbjct: 57  PNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRV 116

Query: 175 FHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC--QANLRPDGMILVIVLSAC 232
           F           + +W  ++  Y    +  +A+L F +M   +   +PD      +L AC
Sbjct: 117 F---DGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKAC 173

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           S LG    G ++H  +T + F+ + +  +  AL+DMY+KC  +P A +VF+ +  KNV+ 
Sbjct: 174 SGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQ 233

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           W +++ G    GQ  EAL++FRR    G +PD   L  V+   A+   +E G+ VH Y  
Sbjct: 234 WTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGI 293

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K+   TD   GN++VDMY KCG  D+A  +FR M+  +V S+T M+ GL  HG   +A+ 
Sbjct: 294 KDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVA 353

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           +F EM   G+EPDEVT++ +LSACSHAGLV+E  ++F  + R   ++P+ EHY CMVDL 
Sbjct: 354 LFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLL 413

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           GRAG +REA DLI++MP+ P   VW  LL AC++H  V +     + L+  + +    Y+
Sbjct: 414 GRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYV 473

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKG---DKSHPKTLE 589
            ++N+ +    W+E  K+R  M+ R +KK  GCS VEV  E + F  G   +++HP+  +
Sbjct: 474 TLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGD 533

Query: 590 IYKLLDEI 597
           I ++L ++
Sbjct: 534 IRRVLRDM 541



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 5/210 (2%)

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDF 326
           MY+KCG +  A +VF  M  +NVVSW +++ G    G     L +   M+      P+++
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           TL   L +C  +G    G  +H    +        + ++LV +Y+K GRI  A  VF   
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120

Query: 387 KC-RDVYSYTAMIVGLAIHGKAWKALDIFSEMS--QVGIEPDEVTFVGVLSACSHAGLVE 443
                + ++ AM+ G A  G    AL +F EM   +   +PDE TF  +L ACS  G   
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATR 180

Query: 444 EGCK-HFLDMSRVYNLQPQTEHYGCMVDLF 472
           EG + H    +  ++        G +VD++
Sbjct: 181 EGAQVHAAMTASGFSTASNAILAGALVDMY 210



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 135/315 (42%), Gaps = 23/315 (7%)

Query: 17  NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL 76
           + F   SLL     L +++   +  Q HA +  +G       IL   ++ +        +
Sbjct: 162 DEFTFASLLKACSGLGATR---EGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPV 218

Query: 77  SLQNPQVYLYNFIIQCLS-------NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ 129
           ++Q  +      +IQ  +            EA+ L+R     G  P+++ L  V+     
Sbjct: 219 AMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLAD 278

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
              +  G+QVH Y +K    ++V   N+++ +Y  CGL     ++F   + P    ++VS
Sbjct: 279 FALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAP----NVVS 334

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           WTT++    K     EA+  F +M    + PD +  + +LSACS  G   L  +  RY +
Sbjct: 335 WTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAG---LVDECRRYFS 391

Query: 250 --DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS-WNSMIAGL-THR-- 303
                  + P    +  ++D+  + G +  AR +   MP++  V  W ++++    H+  
Sbjct: 392 CIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDV 451

Query: 304 GQFKEALDIFRRMQG 318
              +EA D+   M G
Sbjct: 452 AVGREAGDVLLAMDG 466



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 75/185 (40%), Gaps = 38/185 (20%)

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEV 427
           MY KCG +D A  VF  M+ R+V S+TA++VG   HG A   L +  EM       P+E 
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 428 TFVGVLSACSHAGLVEEGCK-HFL---------------------------DMSRVYN-- 457
           T    L AC   G    G   H L                           D  RV++  
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120

Query: 458 -LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPL-----VPDAFVWGALLGACK-IHAKV 510
            L      +  MV  +  AG  R+AL + + M        PD F + +LL AC  + A  
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATR 180

Query: 511 ELAEI 515
           E A++
Sbjct: 181 EGAQV 185


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 172/476 (36%), Positives = 274/476 (57%), Gaps = 7/476 (1%)

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           LR  QQVHA+ + + L  +  +   L+ L    G I    +LF    +P    D   + +
Sbjct: 40  LRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNP----DSFLFDS 95

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           L++   K  +  + +L +  M  +           V+ AC+ L  L LG +IH ++    
Sbjct: 96  LLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCG 155

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           +    D+++  ALI +Y K  ++  A+KVFD MP + +++WNS+I+G    G  +E++ +
Sbjct: 156 YG--SDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGL 213

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F  M   G +PD  T+V +L+SC+ +G L+ G W+H Y D N  + +  +G +L++MY +
Sbjct: 214 FHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTR 273

Query: 373 CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
           CG + +A  VF SMK R+V ++TAMI G  +HG   +A+++F+EM   G  P+ +TFV V
Sbjct: 274 CGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAV 333

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS-MPLV 491
           LSAC+H+GL+++G + F  M   Y L P  EH  CMVD+FGRAGL+ +A   IK  +P  
Sbjct: 334 LSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKE 393

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P   VW ++LGAC++H   +L   V E+++  EPE  G Y++++NIY+   R      +R
Sbjct: 394 PGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVR 453

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             M  R++KK  G S +E+  + Y F  GDKSHP+T  IY+ LDE+M +    GY+
Sbjct: 454 NMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYV 509



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 204/366 (55%), Gaps = 22/366 (6%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISL--SRGNEIENLSL-- 78
           +LL   PRL +      L+Q HA II +G   H+++ L  K+ISL  + G+      L  
Sbjct: 32  ALLRSGPRLRN------LQQVHAHIIVSG--LHRSRSLLTKLISLVCTAGSITYARRLFP 83

Query: 79  --QNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
              NP  +L++ +++  S     ++ +  YR ML  G   + YT   V+KAC    +LR+
Sbjct: 84  TVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRL 143

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G+++H++ M     S++YV   L+ LYA    +K   K+F        QR +++W +LI 
Sbjct: 144 GKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVF----DAMPQRTIIAWNSLIS 199

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            Y +   P E+I  F  M ++  +PD   +V +LS+CS+LG L  G  +H Y   N F+L
Sbjct: 200 GYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDL 259

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             +V +  +LI+MY +CGN+  AR+VFD M  +NVV+W +MI+G    G  ++A+++F  
Sbjct: 260 --NVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTE 317

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA-LVDMYAKCG 374
           M+  G +P++ T V VL++CA+ G ++ G+ V + + + +    G   N  +VDM+ + G
Sbjct: 318 MRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAG 377

Query: 375 RIDQAF 380
            ++ A+
Sbjct: 378 LLNDAY 383


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/545 (33%), Positives = 297/545 (54%), Gaps = 7/545 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K+  L+    I  L+     V     I   + N   + A+  + +ML   + PN +T
Sbjct: 51  MYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFT 110

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
            P VLKA    +    G+Q+HA ++K  L+++V+V  ++  +Y+  G +   +K+F    
Sbjct: 111 FPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMP 170

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
           H    R+L +W   I   V    P +++++F ++ +   +PD +     L+ACS    L 
Sbjct: 171 H----RNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLG 226

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G ++H +I  + +    +V + N LID Y KCG +  +  VFD M  +N VSW+S+IA 
Sbjct: 227 PGCQLHGFIIRSGYG--QNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAA 284

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
                + ++A  +F R +   ++P DF +  VL +CA +  +E G+ V     K  +  +
Sbjct: 285 YVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQN 344

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-S 418
            F+ +ALVDMY KCG ID A   F +M  R++ S+ A++ G A  G A KA+ +  EM S
Sbjct: 345 IFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTS 404

Query: 419 QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             GI P  V+ +  LSACS AG ++ G K F  M   Y ++P  EHY C+VDL GRAG++
Sbjct: 405 AAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMV 464

Query: 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538
             A D IK MP  P   +WGALLGAC++H K EL ++  E L   +P+  G +++++N++
Sbjct: 465 ECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMF 524

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           ++  RW+E   +R +MKE  +KK  G S + V    + F+  DKSH K  EI  +L ++ 
Sbjct: 525 AATGRWEEVTVVRNEMKEVGIKKGAGFSWITVDSRIHMFQAKDKSHEKDPEIQDILGKLR 584

Query: 599 HQSKN 603
            + ++
Sbjct: 585 KEMQD 589



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
            F++N L++MY K  ++ SA+ + +  P ++VV+W ++IAG    G F  AL  F  M  
Sbjct: 42  AFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLS 101

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
             ++P+DFT  CVL +   +     GK +H    K  +  D F+G ++ DMY+K G ++ 
Sbjct: 102 DCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLND 161

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
           A+ VF  M  R++ ++ A I    +HG+   ++  F E+ +VG +PD +TF   L+ACS 
Sbjct: 162 AYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSD 221

Query: 439 AGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
              +  GC+ H   +   Y       +   ++D +G+ G + E  +++       ++  W
Sbjct: 222 KLGLGPGCQLHGFIIRSGYGQNVSVSNG--LIDFYGKCGEV-ECSEMVFDRMGERNSVSW 278

Query: 498 GALLGA 503
            +L+ A
Sbjct: 279 SSLIAA 284


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 175/484 (36%), Positives = 282/484 (58%), Gaps = 6/484 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK C + + L  G+  HA  +   L +++   N L+ +Y+ CG +    ++F       
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFD----EM 125

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
             R LVSW T+I +  +     EA+     M +         +  VL AC+    LS   
Sbjct: 126 PSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQ 185

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            +H +      +L  +VF+  AL+D+Y KCG +  A  VF+ MP ++VV+W+SM AG   
Sbjct: 186 LLHAFAIKAAMDL--NVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQ 243

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
              +++AL +FR+    GLK D F +  V+ +CA +  +  GK ++  L K+   ++ F+
Sbjct: 244 NEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFV 303

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
            ++L+DMYAKCG I++++ VFR ++ R+V  + AMI GL+ H ++ + + +F +M Q+G+
Sbjct: 304 ASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGL 363

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
            P++VTFV VLSAC H GLV +G K+F  M++ ++L P   HY CMVD   RAG I EA 
Sbjct: 364 SPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAY 423

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
           DLI  +P    A +WG+LL +C+ H  +ELAE+  + L   EP   G Y+L++N+Y++  
Sbjct: 424 DLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANG 483

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           +W E  K+RK +KE  VKK  G S +E+  + + F  G+++HPK +EIY  L+E+M + +
Sbjct: 484 KWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQ 543

Query: 603 NHGY 606
             GY
Sbjct: 544 KLGY 547



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 170/303 (56%), Gaps = 8/303 (2%)

Query: 86  YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I  L+ N    EA+ L  +M  +G   + +T+  VL AC    +L   Q +HA+++
Sbjct: 133 WNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAI 192

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           K A+  NV+V   L+ +YA CGL+K    +F         R +V+W+++   YV+ +   
Sbjct: 193 KAAMDLNVFVATALLDVYAKCGLMKDAVCVF----ESMPDRSVVTWSSMAAGYVQNEMYE 248

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           +A+  F    +  L+ D  ++  V+ AC+ L  +  G +++  ++ + F    ++F+ ++
Sbjct: 249 QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGF--CSNIFVASS 306

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           LIDMY KCG I  + KVF ++  +NVV WN+MI+GL+   +  E + +F +MQ +GL P+
Sbjct: 307 LIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPN 366

Query: 325 DFTLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D T V VL++C ++G +  G K+      ++H+  + F  + +VD  ++ G+I +A+ + 
Sbjct: 367 DVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLI 426

Query: 384 RSM 386
             +
Sbjct: 427 SKL 429



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 109/211 (51%), Gaps = 6/211 (2%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+AL+R+    GL  + + +  V+ AC    ++  G+Q++A   K+   SN++V ++L+
Sbjct: 249 QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLI 308

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG I+  +K+F        +R++V W  +I    +     E ++ F  M Q  L 
Sbjct: 309 DMYAKCGGIEESYKVF----RDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLS 364

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P+ +  V VLSAC  +G +  G K    +T  H +L+P+VF ++ ++D   + G I  A 
Sbjct: 365 PNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEH-HLAPNVFHYSCMVDTLSRAGQIFEAY 423

Query: 280 KVFDEMPVKNVVS-WNSMIAGLTHRGQFKEA 309
            +  ++P     S W S++A     G  + A
Sbjct: 424 DLISKLPFNASASMWGSLLASCRTHGNLELA 454


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/509 (35%), Positives = 296/509 (58%), Gaps = 8/509 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +A+  +R+M      P+  ++  ++ A  +S +L  G++VHAY+++  L SN+ + NTL+
Sbjct: 332 DALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLI 391

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA C  +K +   F        ++DL+SWTT+I  Y + +   EAI  F  +    + 
Sbjct: 392 DMYAKCCCVKHMGYAFECMH----EKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMD 447

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            D M++  VL ACS L   +   +IH Y+         D+ + NA++++Y + G+   AR
Sbjct: 448 VDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL---ADIMLQNAIVNVYGEVGHRDYAR 504

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           + F+ +  K++VSW SMI    H G   EAL++F  ++   ++PD   ++  L++ AN+ 
Sbjct: 505 RAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLS 564

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ GK +H +L +     +G I ++LVDMYA CG ++ +  +F S+K RD+  +T+MI 
Sbjct: 565 SLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMIN 624

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
              +HG   +A+ +F +M+   + PD +TF+ +L ACSH+GL+ EG + F  M   Y L+
Sbjct: 625 ANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLE 684

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  EHY CMVDL  R+  + EA   ++SMP+ P + VW ALLGAC IH+  EL E+  + 
Sbjct: 685 PWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKE 744

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L++ + +  G Y L++NI+++  RW +  ++R +MK   +KK PGCS +EV  + + F  
Sbjct: 745 LLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMA 804

Query: 580 GDKSHPKTLEIY-KLLDEIMHQSKNHGYI 607
            DKSHP+T +IY KL        K  GYI
Sbjct: 805 RDKSHPQTDDIYLKLAQFTKLLGKKGGYI 833



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 152/514 (29%), Positives = 253/514 (49%), Gaps = 42/514 (8%)

Query: 18  TFQQLSLLHQSP-----RLESS-----------KSVGQLKQFHAFIIKTG-SPQHQTQIL 60
            FQ L+LL   P     RLE +           K++ Q +Q HA ++K+  S    T++L
Sbjct: 27  AFQSLTLLSTHPLATPSRLEHAHSLLLDLCVAVKALPQGQQLHARLLKSHLSAFLATKLL 86

Query: 61  --YDKIISLSRGNEIENLSLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNT 117
             Y+K  SL    ++ +  +    ++ +N ++   +S+   LEAI LY+EM + G+  + 
Sbjct: 87  HMYEKCGSLKDAVKVFD-EMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDA 145

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
            T P VLKAC      R+G ++H  ++K      V+V N L+ +Y  CG +     LF  
Sbjct: 146 CTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDG 205

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
                 + D VSW ++I A+V      EA+  F  M +  +  +    V  L        
Sbjct: 206 IM--MEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSF 263

Query: 238 LSLGIKIH-RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           + LG+ IH   +  NHF    DV++ NALI MY KCG +  A +VF  M  ++ VSWN++
Sbjct: 264 VKLGMGIHGAALKSNHF---ADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTL 320

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           ++GL     +++AL+ FR MQ    KPD  +++ ++ +    G L  GK VH Y  +N +
Sbjct: 321 LSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGL 380

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
           +++  IGN L+DMYAKC  +      F  M  +D+ S+T +I G A +    +A+++F +
Sbjct: 381 DSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRK 440

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY---GCMVDLFG 473
           +   G++ D +    VL ACS  GL     ++F+     Y  +           +V+++G
Sbjct: 441 VQVKGMDVDPMMIGSVLRACS--GLKS---RNFIREIHGYVFKRDLADIMLQNAIVNVYG 495

Query: 474 RAG---LIREALDLIKSMPLVPDAFVWGALLGAC 504
             G     R A + I+S  +V     W +++  C
Sbjct: 496 EVGHRDYARRAFESIRSKDIVS----WTSMITCC 525



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 135/332 (40%), Gaps = 61/332 (18%)

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           + I  C+ N  P+EA+ L+  +    + P++  +   L A     SL+ G+++H + ++ 
Sbjct: 520 SMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRK 579

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
                  + ++L+ +YA CG ++   K+F    H   QRDL+ WT++I A        EA
Sbjct: 580 GFFLEGPIASSLVDMYACCGTVENSRKMF----HSVKQRDLILWTSMINANGMHGCGNEA 635

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           I  F  M   N+ PD +  + +L ACS  G +  G +    I    + L P    +  ++
Sbjct: 636 IALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFE-IMKYGYQLEPWPEHYACMV 694

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH------------------------ 302
           D+  +  ++  A +    MP+K        + G  H                        
Sbjct: 695 DLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSG 754

Query: 303 -----------RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
                       G++ +  ++  RM+G GLK +               W+E+   +HT++
Sbjct: 755 KYALISNIFAADGRWNDVEEVRLRMKGNGLKKN-----------PGCSWIEVDNKIHTFM 803

Query: 352 --DKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
             DK+H  TD        D+Y K  +  +  G
Sbjct: 804 ARDKSHPQTD--------DIYLKLAQFTKLLG 827


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/403 (39%), Positives = 253/403 (62%), Gaps = 5/403 (1%)

Query: 208 LSFFD-MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           L F+  M + ++ P      ++L +C+  G+  LG   H  I    F    D+ +   L+
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEY--DMILQTGLL 72

Query: 267 DMYLKCGNIPSARKVFDEMPVKNV--VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           D Y K G +  AR +FD M  +N   V+WN+MI+     G+F  A+ +F++MQ   +KP 
Sbjct: 73  DFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPT 132

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
           + T+V +L++CA++G L++G+W+H Y+    +  D  +GNAL+DMY KCG ++ A  VF 
Sbjct: 133 EVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFH 192

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            +  ++++ + ++IVGL ++G+  +A+  F  M + GI+PD VTFVG+LS CSH+GL+  
Sbjct: 193 GLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSA 252

Query: 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGAC 504
           G ++F +M  VY L+P  EHYGCMVDL GRAG ++EAL+LI++MP+ P++ V G+LL AC
Sbjct: 253 GQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRAC 312

Query: 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564
           +IH   +L E V + L+  +P   G Y+ ++N+Y+S +RW +    RK M +R V KTPG
Sbjct: 313 QIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPG 372

Query: 565 CSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           CS +EV    +EF  GD SHP+  +I   LDEI  + K  G++
Sbjct: 373 CSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHV 415



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 144/286 (50%), Gaps = 5/286 (1%)

Query: 102 IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRL 161
           +  Y  ML   +LP+  +   +L++C  S   ++G+  H   MK     ++ +   L+  
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 162 YAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221
           YA  G ++    LF      +   + V+W T+I AYV+      AI  F  M   N++P 
Sbjct: 75  YAKHGYVEEARNLFD--NMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPT 132

Query: 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281
            + +V +LSAC+ LG L +G  IH YI      +  DV + NALIDMY KCG + +A  V
Sbjct: 133 EVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKI--DVVLGNALIDMYCKCGALEAAIDV 190

Query: 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341
           F  +  KN+  WNS+I GL   G+ +EA+  F  M+  G+KPD  T V +L+ C++ G L
Sbjct: 191 FHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLL 250

Query: 342 ELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
             G ++    L    +         +VD+  + G + +A  + R+M
Sbjct: 251 SAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM 296



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 143/302 (47%), Gaps = 25/302 (8%)

Query: 9   SGSRYNDI-NTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQH---QTQIL--YD 62
           SG   ND+  +    SL+ +S  +     +G+   FH  I+K G       QT +L  Y 
Sbjct: 19  SGMLRNDVLPSKTSFSLILRSCAISGEAQLGE--AFHCQIMKMGFEYDMILQTGLLDFYA 76

Query: 63  K--IISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYT 119
           K   +  +R N  +N++ +N     +N +I           AI+++++M  + + P   T
Sbjct: 77  KHGYVEEAR-NLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVT 135

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           +  +L AC    +L +G+ +H Y     L  +V + N L+ +Y  CG ++A   +F    
Sbjct: 136 MVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVF---- 191

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
           H  +++++  W ++I          EAI +F  M +  ++PDG+  V +LS CS  G LS
Sbjct: 192 HGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLS 251

Query: 240 LGIKIHRYITD--NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
            G    RY ++    + L P V  +  ++D+  + G +  A ++   MP+K     NSM+
Sbjct: 252 AG---QRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMV 304

Query: 298 AG 299
            G
Sbjct: 305 LG 306


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/580 (31%), Positives = 313/580 (53%), Gaps = 42/580 (7%)

Query: 53  PQH-----QTQILYDKIISLSRGNEIENL--SLQNPQVYLYNFIIQCLSN-ANPLEAIAL 104
           PQH     +T+ L+D +   S      +L  ++  P   L   +I  LS   +  E +  
Sbjct: 13  PQHLAGLLKTRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDA 72

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           +  +  +G       +P V+K+C    + R G+QVH +++   LL +++V   L+  YA 
Sbjct: 73  FSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAK 132

Query: 165 CGLIKAVHKLFHFRQHP-----------------------------QAQRDLVSWTTLIQ 195
            G +    K+F   + P                               +R   SW ++I 
Sbjct: 133 NGDMDCAVKVFD--EMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIA 190

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            Y       EA+  F  M     RP+ + +  + S C+K GDL  G      I +     
Sbjct: 191 CYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQ- 249

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             ++ +H AL++MY+KC  I  AR+ FD M  ++VV+W++MIAG    G+  E+L++F R
Sbjct: 250 --NMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFER 307

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375
           M+    KP++ TLV VL++CA +G  ELG  + ++++  ++    ++G+AL+DMY KCG 
Sbjct: 308 MKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGH 367

Query: 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
           + +A  VF  M+ + V ++ +M+ GLA++G A  A+ ++ EM++  ++P+E+TFV +L+A
Sbjct: 368 VGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTA 427

Query: 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           C+HAGLV++G   F +M  ++++ PQ EH  C+VDL  ++G +REA   I  M + P+A 
Sbjct: 428 CTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAV 487

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           +W  LL AC+ HA VELA++    L+  EP+    Y+L++NIY+    W +  ++R  M+
Sbjct: 488 IWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMR 547

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
            + V+K    S +E+ GE ++F   D  HPK+ EI+ ++D
Sbjct: 548 SKNVQKLSAYSWIELDGEVHKFLVQDTYHPKSAEIFNVVD 587


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/500 (36%), Positives = 274/500 (54%), Gaps = 41/500 (8%)

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           Q+HA   +  L  +  +   L R YA  G +     LF   Q+P     +  WT +I  +
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPS----VFFWTAIIHGH 103

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
                  +A+  +  M    + P+      +L  C     +  G  +H       F+   
Sbjct: 104 ALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFD--S 157

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS------------------------- 292
           D+++   L+D+Y + G++ SA+++FD MP K++VS                         
Sbjct: 158 DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGME 217

Query: 293 ------WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346
                 WN MI G T  G   EAL +FRRM     KP++ T++ VL++C  +G LE G+W
Sbjct: 218 ERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRW 277

Query: 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK 406
           VH+Y++ N I  +  +G ALVDMY+KCG ++ A  VF  +  +DV ++ +MIVG A+HG 
Sbjct: 278 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 337

Query: 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466
           + +AL +F  M ++G+ P  +TF+G+LSAC H+G V EG   F  M   Y ++P+ EHYG
Sbjct: 338 SQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYG 397

Query: 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
           CMV+L GRAG + +A +L+K+M + PD  +WG LLGAC++H K+ L E ++E LV     
Sbjct: 398 CMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLA 457

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPK 586
             G YIL++NIY++   W    +LR  MK+  VKK PGCS +EV  + +EF  G  +HPK
Sbjct: 458 NSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPK 517

Query: 587 TLEIYKLLDEIMHQSKNHGY 606
             EIY +L+EI    K+HGY
Sbjct: 518 RKEIYMMLEEINGWLKSHGY 537



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 203/410 (49%), Gaps = 40/410 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL----QNPQVYLY 86
           ++ SK++  L Q HA + + G   H       +    S G    +++L    QNP V+ +
Sbjct: 37  IDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFW 96

Query: 87  NFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
             II   +     E A+  Y +ML +G+ PN +T   +LK C     +  G+ +H+ ++K
Sbjct: 97  TAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVK 152

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFH----------------FRQHPQ------- 182
               S++YV   L+ +YA  G + +  +LF                 + +H +       
Sbjct: 153 LGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVL 212

Query: 183 ----AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                +RD V W  +I  Y +   P EA++ F  M +A  +P+ + ++ VLSAC +LG L
Sbjct: 213 FDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGAL 272

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G  +H YI +N      +V +  AL+DMY KCG++  AR VFD++  K+VV+WNSMI 
Sbjct: 273 ESGRWVHSYIENNGIQF--NVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIV 330

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL-DKNHIN 357
           G    G  +EAL +F+ M  +GL P + T + +L++C + GW+  G  +   + D+  I 
Sbjct: 331 GYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIE 390

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGK 406
                   +V++  + G ++QA+ + ++M    D   +  ++    +HGK
Sbjct: 391 PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGK 440


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 198/592 (33%), Positives = 318/592 (53%), Gaps = 56/592 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFII 90
           L+  K++ +LKQ H  I   G  QH +  +  K+I++S                 +N   
Sbjct: 9   LQHCKNIRELKQTHLQIFIHG-LQH-SDFMLPKLITVSSA---------------FNL-- 49

Query: 91  QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
             L  A   EA+ +Y  M    +  N++T  ++LK    SQ+L  G+ +H   +K    S
Sbjct: 50  --LDYATHKEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGS 107

Query: 151 NVYVFNTLMRLYAVCGL-IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
           +V+V N+L+  YA C   + + +++F        +RD++SW ++I AY+       AI  
Sbjct: 108 SVFVQNSLLGFYANCSENLGSAYRVFE----EMPERDVISWNSMISAYMTRGEIQSAIGL 163

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR----------------YITDNHF 253
              M + N+    +    V+   SK G++ L   +                  Y+     
Sbjct: 164 LDKMPERNI----VTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDV 219

Query: 254 NLSPDVFIH---------NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
             +  +F            A+I  Y   G++ SA  +F+ MPVKNVVSWN+MI+G  H  
Sbjct: 220 RAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNH 279

Query: 305 QFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
           +F +AL +F  M   G  +PD  TL+ +L++CA++G LE GKW+++Y+ KN ++    +G
Sbjct: 280 EFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLG 339

Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423
           NAL+DM+AKCG ++ A  VF  M  R + ++T M+ GLA++GK  +A+++F +M   G +
Sbjct: 340 NALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTK 399

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           PD+V F+ VLSAC+H GLVEEG + F  M + + ++P+ EHYGCMVDL GRAG + EA+ 
Sbjct: 400 PDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVR 459

Query: 484 LIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543
               M L P+A +W  LL  CKIH   +L + V E ++  EP       L++N+ +S  R
Sbjct: 460 FTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGR 519

Query: 544 WKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
           W++ L  R  M++++++K PGCS ++V    +EF   D  H +  EIY+ L 
Sbjct: 520 WEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEIYRALS 571


>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
          Length = 577

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/532 (34%), Positives = 305/532 (57%), Gaps = 49/532 (9%)

Query: 78  LQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           +Q P V++YN + +  ++ ++P+ ++ LY  ML   + P++YT   ++KA   S + R G
Sbjct: 86  MQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKA--SSFASRFG 143

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           + + A+  K     +V +  TL+  Y+  G I+   K+F        +RD ++WTT++ A
Sbjct: 144 ESLQAHIWKFGFGFHVKIQTTLIDFYSATGGIREARKVFD----EMPERDDIAWTTMVSA 199

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y ++           DM  AN   + M         S+  + +                 
Sbjct: 200 YRRV----------LDMDSANSLANQM---------SEKNEAT----------------- 223

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
                 N LI+ Y+  GN+  A  +F++MPVK+++SW +MI G +   +++EA+ +F +M
Sbjct: 224 -----SNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKM 278

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
              G+ PD+ T+  V+++CA++G LE+GK VH Y  +N    D +IG+ALVDMY+KCG +
Sbjct: 279 MEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSL 338

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           ++A  VF ++  ++++ + ++I GLA HG A +AL +F++M    ++P+ VTFV V +AC
Sbjct: 339 ERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTAC 398

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
           +HAGLV+EG + +  M   Y++    EHYG MV LF +AGLI EAL+LI +M   P+A +
Sbjct: 399 THAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVI 458

Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
           WGALL  C+IH  + +AEI    L+  EP   G Y L+ ++Y+ +NRW++  ++R +M+E
Sbjct: 459 WGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRE 518

Query: 557 RKVKKT-PGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
             ++K  PG S + +    + F   DKSH  + E+  LLDEI  Q    GY+
Sbjct: 519 LGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEVCLLLDEIYDQMGLAGYV 570



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 34/236 (14%)

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K  +N D  + N  +        +D A      M+  +V+ Y A+  G        ++L+
Sbjct: 53  KTSLNQDCRLMNQFITACTSFKCLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLE 112

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDL 471
           ++  M +  + P   T+  ++ A S A    E  + H       ++++ QT     ++D 
Sbjct: 113 LYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKFGFGFHVKIQT----TLIDF 168

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGA--------------------------CK 505
           +   G IREA  +   MP   D   W  ++ A                          C 
Sbjct: 169 YSATGGIREARKVFDEMP-ERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCL 227

Query: 506 IHAKVELAEIVM-ENLVRFEPEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           I+  + L  +   E+L    P  D  ++  M   YS   R++EA+ +  KM E  +
Sbjct: 228 INGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGI 283


>gi|357119036|ref|XP_003561252.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71490-like [Brachypodium distachyon]
          Length = 692

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/556 (34%), Positives = 297/556 (53%), Gaps = 42/556 (7%)

Query: 86  YNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           YN +I  CL +  P  A+A Y++M    +LP+ +T P VL+AC ++  L +G+ VH + +
Sbjct: 130 YNILISSCLRHGFPRHALAAYQQMARSAVLPDAFTYPSVLRACAEAGDLALGRAVHLHGL 189

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
            T +  +++  N L+ +YA  G + A  K+F       AQ+D+VSW ++I AYV +    
Sbjct: 190 ATGVGGHLFFQNALVSMYAKSGDLVAARKVFE----GMAQKDVVSWNSMISAYVAVGQWV 245

Query: 205 EAILSF-----------------------------------FDMCQANLRPDGMILVIVL 229
           +A+  F                                    +M       D + LVI  
Sbjct: 246 QAVELFERMRAEEAEVNSVTWNTIAGVYINTRDHRAAVGLIREMVSDGAAVDFVTLVIGS 305

Query: 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN 289
           +ACS++G L LG +IH        N      + NALI MY +C ++ SA  +F  +    
Sbjct: 306 NACSRVGWLRLGKEIHGLAV--RMNCDGVESVANALITMYARCKHMDSACLLFKMLACPG 363

Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
           VV+WN+MIA      + +EA  +   M G G++P+  T+V +L  CA +  L+ G+ +H+
Sbjct: 364 VVTWNTMIASFALSDEAEEASRLVHEMVGAGVQPNYVTVVTLLALCARVANLQHGQELHS 423

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
           ++ KN       + N+L+DMY+K G +  A  VF +M  RD+ SYT MI G  + GK   
Sbjct: 424 HIVKNGFKGYRLLWNSLIDMYSKSGXLSVAQNVFDTMDDRDMISYTXMIAGYGMQGKGTI 483

Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
           AL +F +M   GI+PD ++ V VLSACSH+GLV EG K F  M+  Y ++PQ EHY CMV
Sbjct: 484 ALRLFDQMIDSGIKPDHISMVTVLSACSHSGLVTEGEKLFDKMTSSYGIKPQMEHYSCMV 543

Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
           DL+ R+GL+ +A  ++      P + +W AL+GAC     + + E     L+  + E  G
Sbjct: 544 DLYARSGLLEKAEGMLNESSSPPTSMMWAALVGACHDRGNIIIGERAARRLLEMKTENAG 603

Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
            Y+L+ N+Y++   W E   +RK M++  V K PG + V++   F  F  GD+S+P   E
Sbjct: 604 HYVLIANMYAAAGCWDELATVRKLMRDLGVTKAPGLAWVDLRNGFAPFLVGDRSNPLAPE 663

Query: 590 IYKLLDEIMHQSKNHG 605
           IY++LDE+  Q +N G
Sbjct: 664 IYEVLDELSEQMRNIG 679



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 120/242 (49%), Gaps = 9/242 (3%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           L  P V  +N +I   + ++  E A  L  EM+  G+ PN  T+  +L  C +  +L+ G
Sbjct: 359 LACPGVVTWNTMIASFALSDEAEEASRLVHEMVGAGVQPNYVTVVTLLALCARVANLQHG 418

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           Q++H++ +K        ++N+L+ +Y+  G +     +F         RD++S+T +I  
Sbjct: 419 QELHSHIVKNGFKGYRLLWNSLIDMYSKSGXLSVAQNVFDTMD----DRDMISYTXMIAG 474

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y      T A+  F  M  + ++PD + +V VLSACS  G ++ G K+   +T + + + 
Sbjct: 475 YGMQGKGTIALRLFDQMIDSGIKPDHISMVTVLSACSHSGLVTEGEKLFDKMTSS-YGIK 533

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDE--MPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
           P +  ++ ++D+Y + G +  A  + +E   P  +++ W +++     RG         R
Sbjct: 534 PQMEHYSCMVDLYARSGLLEKAEGMLNESSSPPTSMM-WAALVGACHDRGNIIIGERAAR 592

Query: 315 RM 316
           R+
Sbjct: 593 RL 594


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 196/570 (34%), Positives = 306/570 (53%), Gaps = 43/570 (7%)

Query: 55  HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGL 113
              QIL+DK          ENL+ Q+     YN +I   S   +  +A+ L+  ++  GL
Sbjct: 291 QDAQILFDKS---------ENLNRQS-----YNAMITGYSQEEHGFKALLLFHRLMSSGL 336

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
             +  +L  V +AC   + L  G Q++  ++K++L  +V V N  + +Y  C  +    +
Sbjct: 337 GFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFR 396

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233
           +F        +RD VSW  +I A+ +     E +  F  M ++ + PD      VL AC+
Sbjct: 397 VFD----EMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACT 452

Query: 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV------------ 281
             G L  G++IH  I  +   ++ +  +  +LIDMY KCG I  A K+            
Sbjct: 453 G-GSLGYGMEIHSSIVKS--GMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSG 509

Query: 282 ----FDEMPVKNV----VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
                ++M  K +    VSWNS+I+G   + Q ++A  +F RM  +G+ PD FT   VL+
Sbjct: 510 TMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLD 569

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           +CAN+    LGK +H  + K  + +D +I + LVDMY+KCG +  +  +F     RD  +
Sbjct: 570 TCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVT 629

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           + AMI G A HGK  +A+ +F  M    I+P+ VTF+ +L AC+H GL+++G ++F  M 
Sbjct: 630 WNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMK 689

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA-KVEL 512
           R Y L PQ  HY  MVD+ G++G ++ AL+LI+ MP   D  +W  LLG C IH   VE+
Sbjct: 690 RDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEV 749

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           AE     L+R +P+   AY L++N+Y+    W++   LR+ M+  K+KK PGCS VE+  
Sbjct: 750 AEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKD 809

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           E + F  GDK+HP+  EIY+ L  I  + K
Sbjct: 810 ELHVFLVGDKAHPRWEEIYEELGLIYSEMK 839



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 196/390 (50%), Gaps = 10/390 (2%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           L N   L++I ++ +M   G   +  T   +LK C   +   +G Q+H   ++    ++V
Sbjct: 114 LQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDV 173

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
              + L+ +YA     + V  L  F+  P+  ++ VSW+ +I   V+ +  + A+  F +
Sbjct: 174 VAASALLDMYAKGK--RFVESLRVFQGIPE--KNSVSWSAIIAGCVQNNLLSLALKFFKE 229

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M + N      I   VL +C+ L +L LG ++H +   + F  + D  +  A +DMY KC
Sbjct: 230 MQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDF--AADGIVRTATLDMYAKC 287

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
            N+  A+ +FD+    N  S+N+MI G +      +AL +F R+   GL  D+ +L  V 
Sbjct: 288 DNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVF 347

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +CA +  L  G  ++    K+ ++ D  + NA +DMY KC  + +AF VF  M+ RD  
Sbjct: 348 RACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAV 407

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+ A+I     +GK ++ L +F  M +  IEPDE TF  VL AC+   L   G    +  
Sbjct: 408 SWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTGGSL---GYGMEIHS 464

Query: 453 SRVYNLQPQTEHYGC-MVDLFGRAGLIREA 481
           S V +        GC ++D++ + G+I EA
Sbjct: 465 SIVKSGMASNSSVGCSLIDMYSKCGMIEEA 494



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 132/511 (25%), Positives = 225/511 (44%), Gaps = 16/511 (3%)

Query: 79  QNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138
           +N +    N  ++C            +  M++ G  P T+ L  +L+    S+       
Sbjct: 3   ENLRFLRMNRAVECAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASM 62

Query: 139 VHAYSMKTALLSNVYVFNTLMRLYAVCG-LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           V         L +V  +N ++  YA    ++KA    F F   P   RD+VSW +++  Y
Sbjct: 63  V----FDRMPLRDVVSWNKMINGYAKSNNMVKAS---FFFNMMPV--RDVVSWNSMLSGY 113

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
           ++     ++I  F DM +A    DG    I+L  CS L D SLG++IH  +         
Sbjct: 114 LQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVV--RVGCDT 171

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           DV   +AL+DMY K      + +VF  +P KN VSW+++IAG         AL  F+ MQ
Sbjct: 172 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
            +           VL SCA +  L LG  +H +  K+    DG +  A +DMYAKC  + 
Sbjct: 232 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 291

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A  +F   +  +  SY AMI G +     +KAL +F  +   G+  DE++  GV  AC+
Sbjct: 292 DAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 351

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
               + EG + + D++   +L          +D++G+   + EA  +   M    DA  W
Sbjct: 352 LVKGLSEGLQIY-DLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR-RDAVSW 409

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
            A++ A + + K      +  +++R   E D           +       +++   + + 
Sbjct: 410 NAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTGGSLGYGMEIHSSIVKS 469

Query: 558 KV--KKTPGCSLVEVYGEFYEFRKGDKSHPK 586
            +    + GCSL+++Y +     + +K H +
Sbjct: 470 GMASNSSVGCSLIDMYSKCGMIEEAEKIHSR 500


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/519 (36%), Positives = 284/519 (54%), Gaps = 48/519 (9%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +L AC    + R   ++HA  ++  L S+  V   L R YA  G +     L    + P 
Sbjct: 30  LLAAC---STARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPT 86

Query: 183 AQRDLVSWTTLIQAYVK--MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
                + +T+ I A+    +  P  A+LS  DM    L P    L   L AC  L   SL
Sbjct: 87  T----IFYTSAIHAHSSRGLHLPGLALLS--DMLSEGLLPTAHTLSASLPACRGL---SL 137

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMY---------------------------LKC- 272
           G  +H Y       LS D ++  AL+ MY                           L C 
Sbjct: 138 GRALHAYAFK--LALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCY 195

Query: 273 ---GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
              G +  AR++FD +P K+ + WN+MI G T  G+  EAL +FRRM     +PD+ T+V
Sbjct: 196 ANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVV 255

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
            VL++ A +G +E GKW+H+Y+  +  +  +  +  ALVDMY KCG ++ A  VF  +  
Sbjct: 256 LVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGN 315

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
           +D+  + AMI G A+HG + KAL++F ++   G+ P ++TF+G+L+ACSH+GLVEEG   
Sbjct: 316 KDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSF 375

Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           F  M   Y + P+ EHYGCMVDL GRAGLI EA  L++S+ + PDA +W +LL AC++H 
Sbjct: 376 FQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHK 435

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
            + L + + + LV       G YIL++NIY++  +W+E  ++R  MK   ++K PGCS +
Sbjct: 436 NMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAI 495

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           E+  + YEF  GD SHP T EIY +LD++    K HG++
Sbjct: 496 EIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHV 534



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 195/409 (47%), Gaps = 40/409 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL----QNPQVYLY 86
           L +  +  +  + HA +++ G    +      +    + G    +L+L    ++P    Y
Sbjct: 31  LAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFY 90

Query: 87  NFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMK 145
              I   S+    L  +AL  +ML +GLLP  +TL   L AC   + L +G+ +HAY+ K
Sbjct: 91  TSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPAC---RGLSLGRALHAYAFK 147

Query: 146 TALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA---------------------- 183
            AL  + YV   L+ +YA  G   A   LF     P                        
Sbjct: 148 LALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRL 207

Query: 184 -----QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                ++D + W  +I  Y +   P EA+  F  M +++  PD + +V+VLSA ++LG +
Sbjct: 208 FDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTV 267

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G  +H Y+  N   +  +V +  AL+DMY KCG++  A  VF  +  K++V WN+MI 
Sbjct: 268 ESGKWLHSYVK-NSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMIN 326

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G    G  ++AL++F +++  GL P D T + +LN+C++ G +E G+     ++  +   
Sbjct: 327 GYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEY-GI 385

Query: 359 DGFIGN--ALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIH 404
           D  I +   +VD+  + G I++AF + +S+    D   + +++    +H
Sbjct: 386 DPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLH 434


>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/497 (35%), Positives = 279/497 (56%), Gaps = 43/497 (8%)

Query: 137 QQVHAYSMKTAL-LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
            Q++ + +KT L L+ +     L    +  G I   +KLF    +P    +L SW T+I+
Sbjct: 45  HQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNP----NLYSWNTIIR 100

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           A+ +   P  AI  F DM  + ++P  +    V  A ++LG    G ++H  +      L
Sbjct: 101 AFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVK--LGL 158

Query: 256 SPDVFIHNALIDMYL-----------------------------------KCGNIPSARK 280
             D FI N +I MY                                    KCG I  +R 
Sbjct: 159 QNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRN 218

Query: 281 VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
           +FD+M  +  VSWNSMI+G    G+  EAL++F +MQ  G +  +FT+V +LN+CA++G 
Sbjct: 219 LFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGA 278

Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
           L+ GKWVH Y+ +NH   +  +  A++DMY KCG ++ A  VF +   R +  + ++I+G
Sbjct: 279 LQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIG 338

Query: 401 LAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           LA++G   +A + FS++ S   ++PD V+F+GVL+AC H G + +   +F  M   Y ++
Sbjct: 339 LAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIE 398

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  +HY C+VD+ G+AGL+ EA +LIK MPL PDA +WG+LL +C+ H  V++A    + 
Sbjct: 399 PSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAAQR 458

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           +    P     Y+LM+N++++ N+++EA++ R  MKE   +K PGCS +E+YGE +EF  
Sbjct: 459 VYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEPGCSSIELYGEVHEFIA 518

Query: 580 GDKSHPKTLEIYKLLDE 596
           G + HPKT EIY LL++
Sbjct: 519 GGRLHPKTQEIYHLLND 535



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 180/390 (46%), Gaps = 41/390 (10%)

Query: 36  SVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIENL--SLQNPQVYLYNFII 90
           ++    Q +  IIKTG   +P   T+ L          N    L   + NP +Y +N II
Sbjct: 40  TINHFHQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNTII 99

Query: 91  QCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           +  S ++ P  AI+L+ +ML   + P   T P V KA  Q      G Q+H   +K  L 
Sbjct: 100 RAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQ 159

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDL---------------------- 187
           ++ ++ NT++ +YA  GL+    ++F  ++      D+                      
Sbjct: 160 NDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNL 219

Query: 188 ---------VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                    VSW ++I  YV+     EA+  F  M           +V +L+AC+ LG L
Sbjct: 220 FDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGAL 279

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
             G  +H YI  NHF L  +V +  A+IDMY KCG++ +A +VF+  P + +  WNS+I 
Sbjct: 280 QHGKWVHDYIKRNHFEL--NVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIII 337

Query: 299 GLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGK-WVHTYLDKNHI 356
           GL   G  +EA + F +++    LKPD  + + VL +C ++G +   + +    ++K  I
Sbjct: 338 GLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEI 397

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
                    +VD+  + G +++A  + + M
Sbjct: 398 EPSIKHYTCIVDVLGQAGLLEEAEELIKGM 427


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 205/623 (32%), Positives = 329/623 (52%), Gaps = 32/623 (5%)

Query: 6   TVASGSRYNDINT-----FQQLSLLHQSPR----------LESSKSVGQLKQFHAFIIKT 50
           ++ +G R N +N      F Q+ L    P           L +  +V +  Q H  +IK+
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 51  GSPQ-----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQC-LSNANPLEAIAL 104
           G        +    +Y K + +S    + + S++N     +N +I   ++N   LEA  L
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFD-SMENRNAVSWNSMIAGFVTNGLDLEAFEL 281

Query: 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164
           +  M ++G+         V+K C   + +   +Q+H   +K     ++ +   LM  Y+ 
Sbjct: 282 FYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSK 341

Query: 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI 224
           C  I    KLF      Q   ++VSWT +I  YV+      A+  F  M +  +RP+   
Sbjct: 342 CSEIDDAFKLFCMMHGVQ---NVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFT 398

Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
              +L+A + +       +IH  +   ++  SP V    AL D Y K G+   A K+F+ 
Sbjct: 399 YSTILTANAAVSP----SQIHALVVKTNYENSPSV--GTALSDSYSKIGDANEAAKIFEL 452

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN-IGWLEL 343
           +  K++V+W++M++G    G  + A+ IF ++   G++P++FT   VLN+CA     +E 
Sbjct: 453 IDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQ 512

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           GK  H+   K+  +    + +ALV MYAK G I+ A  VF+    RD+ S+ +MI G A 
Sbjct: 513 GKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQ 572

Query: 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE 463
           HG   K+L IF EM    +E D +TF+GV+SAC+HAGLV EG ++F  M + Y++ P  E
Sbjct: 573 HGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTME 632

Query: 464 HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523
           HY CMVDL+ RAG++ +A+DLI  MP    A +W  LL AC++H  V+L E+  E L+  
Sbjct: 633 HYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISL 692

Query: 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKS 583
           +P+   AY+L++NIY++   W+E  K+RK M  +KVKK  G S +EV  + + F  GD S
Sbjct: 693 QPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLS 752

Query: 584 HPKTLEIYKLLDEIMHQSKNHGY 606
           HP++  IY  L+E+  + K+ GY
Sbjct: 753 HPQSDRIYLKLEELSIRLKDAGY 775



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 198/420 (47%), Gaps = 13/420 (3%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    EA+ L+  +   G   +  +L  VLK C       VG+QVH   +K   + +V V
Sbjct: 70  NDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSV 129

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
             +L+ +Y     ++   ++F         +++VSWT+L+  Y +     +A+  F  M 
Sbjct: 130 GTSLVDMYMKTESVEDGERVFD----EMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQ 185

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              ++P+      VL   +  G +  G+++H  +  +   L   +F+ N++++MY K   
Sbjct: 186 LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS--GLDSTIFVGNSMVNMYSKSLM 243

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +  A+ VFD M  +N VSWNSMIAG    G   EA ++F RM+  G+K        V+  
Sbjct: 244 VSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKL 303

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-CRDVYS 393
           CANI  +   K +H  + KN  + D  I  AL+  Y+KC  ID AF +F  M   ++V S
Sbjct: 304 CANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVS 363

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           +TA+I G   +G+  +A+++F +M + G+ P+  T+  +L+A      V     H L + 
Sbjct: 364 WTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA---NAAVSPSQIHALVVK 420

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
             Y   P       + D + + G   EA  + + +    D   W A+L        +E A
Sbjct: 421 TNYENSPSVGT--ALSDSYSKIGDANEAAKIFELID-EKDIVAWSAMLSGYAQMGDIEGA 477



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 162/336 (48%), Gaps = 23/336 (6%)

Query: 177 FRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236
           F + PQ  + L     L+  + + D   EA+  F  + ++    DG  L  VL  C  L 
Sbjct: 49  FDETPQ--QGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSM 296
           D  +G ++H       F    DV +  +L+DMY+K  ++    +VFDEM VKNVVSW S+
Sbjct: 107 DRIVGKQVHCQCIKCGF--VEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           +AG    G  ++AL +F +MQ  G+KP+ FT   VL   A  G +E G  VHT + K+ +
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
           ++  F+GN++V+MY+K   +  A  VF SM+ R+  S+ +MI G   +G   +A ++F  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL----- 471
           M   G++  +  F  V+  C+          +  +MS    L  Q    G   DL     
Sbjct: 285 MRLEGVKLTQTIFATVIKLCA----------NIKEMSFAKQLHCQVIKNGSDFDLNIKTA 334

Query: 472 ----FGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
               + +   I +A  L   M  V +   W A++  
Sbjct: 335 LMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 2/226 (0%)

Query: 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           ++++FDE P + +   N ++   +   Q KEAL++F  ++  G   D  +L CVL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
           +    +GK VH    K     D  +G +LVDMY K   ++    VF  M+ ++V S+T++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
           + G   +G   +AL +FS+M   GI+P+  TF  VL   +  G VE+G +    M     
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           L         MV+++ ++ ++ +A  +  SM    +A  W +++  
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAG 268


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/514 (34%), Positives = 296/514 (57%), Gaps = 24/514 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ ++ + L  G  P+ YT+  ++ AC +  S+R+G Q+H+ +++    S+  V   L+
Sbjct: 237 EAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLV 296

Query: 160 RLYAVCGLIKAV---HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF-DMCQ 215
            +YA   + +A+   +K+F   +    + D++SWT LI  YV+       ++  F +M  
Sbjct: 297 DMYAKSNIEQAMDYANKVFERMR----KNDVISWTALISGYVQSGVQENKVMVLFGEMLN 352

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
            +++P+ +    +L AC+ + D   G ++H ++  +  N +    + NAL+ MY + G +
Sbjct: 353 ESIKPNHITYSSILKACANISDHDSGRQVHAHVIKS--NQAAAHTVGNALVSMYAESGCM 410

Query: 276 PSARKVFDEMPVKNVVSW--NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
             AR+VF+++  ++++S       A L HR           RM  +G+    F    +++
Sbjct: 411 EEARRVFNQLYERSMISCITEGRDAPLDHR---------IGRMD-MGISSSTFA--SLIS 458

Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
           + A++G L  G+ +H    K    +D F+ N+LV MY++CG ++ A   F  +K R+V S
Sbjct: 459 AAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVIS 518

Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
           +T+MI GLA HG A +AL +F +M   G++P++VT++ VLSACSH GLV EG ++F  M 
Sbjct: 519 WTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQ 578

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
           R + L P+ EHY CMVDL  R+GL++EAL+ I  MPL  DA VW  LLGAC+ H  +E+ 
Sbjct: 579 RDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVG 638

Query: 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
           EI  +N++  EP     Y+L++N+Y+    W E  ++R  M++  + K  G S +EV   
Sbjct: 639 EIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENT 698

Query: 574 FYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            +EFR GD SHP+  +IY  LD ++ + K  GY+
Sbjct: 699 THEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYV 732



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 159/312 (50%), Gaps = 10/312 (3%)

Query: 133 LRVGQQVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
           LR+G+ +H   ++  LL  +  V N+L+ LY+ CG + +   +F      +  RD+VSWT
Sbjct: 64  LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVF---DGMRGLRDIVSWT 120

Query: 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
            +     +     E++L   +M ++ L P+   L  V  AC    +L   +        +
Sbjct: 121 AMASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFP-HELYCLVGGVVLGLVH 179

Query: 252 HFNL-SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310
              L   D+ + +ALIDM  + G++ SARKVFD +  K VV W  +I+        +EA+
Sbjct: 180 KMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAV 239

Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370
           +IF      G +PD +T+  ++++C  +G + LG  +H+   +    +D  +   LVDMY
Sbjct: 240 EIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMY 299

Query: 371 AKCG---RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG-KAWKALDIFSEMSQVGIEPDE 426
           AK      +D A  VF  M+  DV S+TA+I G    G +  K + +F EM    I+P+ 
Sbjct: 300 AKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNH 359

Query: 427 VTFVGVLSACSH 438
           +T+  +L AC++
Sbjct: 360 ITYSSILKACAN 371


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/507 (35%), Positives = 283/507 (55%), Gaps = 6/507 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+R M  +    N +    VL A    + +  G+Q+H  ++K  LLS V V N L+
Sbjct: 192 EALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALV 251

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG +    + F       + ++ ++W+ +I  Y +     +A+  F  M  + +R
Sbjct: 252 TMYAKCGSLDDALQTFE----TSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIR 307

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P     V V++ACS LG    G ++H Y+    F     +++  AL+DMY KC +I  AR
Sbjct: 308 PSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFE--SQIYVMTALVDMYAKCSSIVDAR 365

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           K FD +   ++V W SMI G    G+ ++AL ++ RM+  G+ P++ T+  VL +C+++ 
Sbjct: 366 KGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLA 425

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            LE GK +H    K     +  IG+AL  MYAKCG +     VFR M  RDV S+ AMI 
Sbjct: 426 ALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMIS 485

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           GL+ +G   +AL++F EM   G +PD VTFV +LSACSH GLVE G  +F  M   + + 
Sbjct: 486 GLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMD 545

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P+ EHY CMVD+  RAG ++EA++  +S  +     +W  +LGAC+ +   EL     E 
Sbjct: 546 PRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEK 605

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L+    +   AY+L+++IYS+  RW++  ++R+ MK R V K PGCS +E+    + F  
Sbjct: 606 LMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVV 665

Query: 580 GDKSHPKTLEIYKLLDEIMHQSKNHGY 606
            D+ HP+  +I+  L ++  Q K+ GY
Sbjct: 666 KDQMHPQIGDIHVELRQLSKQMKDEGY 692



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 159/562 (28%), Positives = 250/562 (44%), Gaps = 51/562 (9%)

Query: 34  SKSVGQLKQFHAFIIKTGSP----QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFI 89
           ++S+ + K  HA IIK+ S      +    LY K   L     +    +QN  V  +N I
Sbjct: 19  NRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFE-RIQNKDVVSWNCI 77

Query: 90  IQCLSNANPLEA---IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           I   S   P  +   + L++ M  +   PN +T   V  A         G+  HA ++K 
Sbjct: 78  INGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKM 137

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
               +V+V ++LM +Y   GL     K+F        +R+ VSW T+I  Y       EA
Sbjct: 138 DSCRDVFVGSSLMNMYCKAGLTPEARKVF----DTMPERNSVSWATMISGYASQKLAAEA 193

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F  M +     +  +   VLSA +    ++ G +IH     N   L   V + NAL+
Sbjct: 194 LGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKN--GLLSIVSVGNALV 251

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
            MY KCG++  A + F+    KN ++W++MI G    G   +AL +F  M   G++P +F
Sbjct: 252 TMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEF 311

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T V V+N+C+++G    GK VH YL K    +  ++  ALVDMYAKC  I  A   F  +
Sbjct: 312 TFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYL 371

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG- 445
           +  D+  +T+MI G   +G+   AL ++  M   GI P+E+T   VL ACS    +E+G 
Sbjct: 372 QEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGK 431

Query: 446 ---------------------------CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAG 476
                                      C    D + V+   P  +   +  M+    + G
Sbjct: 432 QIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNG 491

Query: 477 LIREALDLIKSMPLV---PDAFVWGALLGACKIHAKVELAE---IVMENLVRFEPEGDGA 530
             +EAL+L + M L    PD   +  +L AC     VE       +M +    +P  +  
Sbjct: 492 CGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVE-H 550

Query: 531 YILMTNIYSSKNRWKEALKLRK 552
           Y  M +I S   + KEA++  +
Sbjct: 551 YACMVDILSRAGKLKEAIEFTE 572



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 200/395 (50%), Gaps = 17/395 (4%)

Query: 114 LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
           LP+  +    L     ++SL+ G+ +HA  +K++  S VY+ N+L+ LYA C  ++    
Sbjct: 3   LPSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSS-SCVYIANSLVNLYAKCQRLREAKF 61

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA-ILSFFDMCQA-NLRPDGMILVIVLSA 231
           +F   Q+    +D+VSW  +I  Y +      + ++  F   +A N  P+      V +A
Sbjct: 62  VFERIQN----KDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTA 117

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
            S L D + G   H        +   DVF+ ++L++MY K G  P ARKVFD MP +N V
Sbjct: 118 ASTLVDAAGGRLAHAVAI--KMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSV 175

Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351
           SW +MI+G   +    EAL +FR M+      ++F    VL++      +  GK +H   
Sbjct: 176 SWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIA 235

Query: 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411
            KN + +   +GNALV MYAKCG +D A   F +   ++  +++AMI G A  G + KAL
Sbjct: 236 VKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKAL 295

Query: 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
            +FS M   GI P E TFVGV++ACS  G   EG K   D       + Q      +VD+
Sbjct: 296 KLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEG-KQVHDYLLKLGFESQIYVMTALVDM 354

Query: 472 FGRAGLI---REALDLIKSMPLVPDAFVWGALLGA 503
           + +   I   R+  D ++     PD  +W +++G 
Sbjct: 355 YAKCSSIVDARKGFDYLQE----PDIVLWTSMIGG 385


>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
 gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
 gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
          Length = 620

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/470 (37%), Positives = 278/470 (59%), Gaps = 8/470 (1%)

Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
           HA   K  L S+ +  ++L+ +Y+      A  K+F+        RD+VSW  +++AY +
Sbjct: 151 HALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNG----IPSRDVVSWNAMMKAYGR 206

Query: 200 MDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +    E      DM +   + P+ + L +VL+AC   GDL LG  +  +       +  D
Sbjct: 207 VGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEW--SKSAGMETD 264

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
             + +AL+ MY KCG I  AR+VFD +  K+VV+WN+MI G    G   EA+ +F  M+ 
Sbjct: 265 SLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKK 324

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378
            G+ PD  TL  VL++C+ +G LELG  +  Y     +  + ++G ALVDMYAKCG +D+
Sbjct: 325 AGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDK 384

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACS 437
           A  VFR M+C++V S+ A+I GLA +G+  +A+  F  M ++ G++PD++TF+GVLSAC 
Sbjct: 385 AIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACV 444

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAGLV++G + F  ++  + + P+ EHY CMVD   R+G + E  D I+ +P   DA + 
Sbjct: 445 HAGLVKDGKRWFNSLTSEFQIIPKIEHYSCMVDPLARSGHLEEVWDFIEKIPDKVDAVML 504

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GALL AC+    VE+ E V+  +++ EP     Y++ + IY+S  R  ++ K+R  M+ER
Sbjct: 505 GALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGLMRER 564

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            V KTPGCS VE+ G+  EF  GD+      ++Y++LD ++ + +  GY+
Sbjct: 565 GVNKTPGCSWVEISGKVLEFYAGDEPQHGADDMYQVLDLLVDEMRLEGYV 614



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 152/280 (54%), Gaps = 9/280 (3%)

Query: 104 LYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLY 162
           + R+M+  G ++PN  TL  VL AC     L +G+ V  +S    + ++  V + L+ +Y
Sbjct: 216 MLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMY 275

Query: 163 AVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222
             CG I    ++F         +D+V+W  +I  Y +     EAI  F +M +A + PD 
Sbjct: 276 EKCGEIAEARRVF----DSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDK 331

Query: 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282
           + L  VLSACS +G L LG ++  Y +     L  +V++  AL+DMY KCG++  A +VF
Sbjct: 332 ITLAGVLSACSAVGALELGSELDGYASCR--GLYNNVYVGTALVDMYAKCGDLDKAIEVF 389

Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWL 341
            +M  KNV SWN++I GL   GQ  EA+  F  M+   GLKPDD T + VL++C + G +
Sbjct: 390 RKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLV 449

Query: 342 ELGK-WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           + GK W ++   +  I       + +VD  A+ G +++ +
Sbjct: 450 KDGKRWFNSLTSEFQIIPKIEHYSCMVDPLARSGHLEEVW 489



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 110/232 (47%), Gaps = 10/232 (4%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTY 118
           +Y+K   ++    + + S+ +  V  +N +I   + N    EAI+L+  M   G+ P+  
Sbjct: 274 MYEKCGEIAEARRVFD-SIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKI 332

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG-LIKAVHKLFHF 177
           TL  VL AC    +L +G ++  Y+    L +NVYV   L+ +YA CG L KA+      
Sbjct: 333 TLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKM 392

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM-CQANLRPDGMILVIVLSACSKLG 236
           R      +++ SW  LI          EAI  F  M  +  L+PD +  + VLSAC   G
Sbjct: 393 R-----CKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAG 447

Query: 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288
            +  G +    +T + F + P +  ++ ++D   + G++       +++P K
Sbjct: 448 LVKDGKRWFNSLT-SEFQIIPKIEHYSCMVDPLARSGHLEEVWDFIEKIPDK 498


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 189/496 (38%), Positives = 289/496 (58%), Gaps = 10/496 (2%)

Query: 115 PNTYT-LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHK 173
           PN+Y     VL++C  S+SL  G+Q+H   + + L  +  +   L+ LYA CGL+    +
Sbjct: 59  PNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARR 118

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE-AILSFFDMCQANLRPDGMILVIVLSAC 232
           LF        +R++  W  LI+AY + D P E AI  +  M    + PD     + L AC
Sbjct: 119 LFD----GMPKRNVFLWNVLIRAYAR-DGPHEVAIQLYRGMVDYGVEPDNFTYPLALKAC 173

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
           + L DL  G ++H  +   H+    D+F+   L+DMY KCG +  AR VFD + V++ V 
Sbjct: 174 AALLDLETGREVHERVLGTHWG--EDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVV 231

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WNSMIA     G+  EAL + R M   G+ P   TLV  +++ A+   L  G+ +H +  
Sbjct: 232 WNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGW 291

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           +   +    +  +LVDMYAK G +  A  +F  +  R++ S+ AMI G  +HG   +AL 
Sbjct: 292 RRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALK 351

Query: 413 IFSEMS-QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
           +F++M  +  + PD +TFVGVLSAC+H G+V+E  + F  M  VY+++P  +H+ C+VD+
Sbjct: 352 LFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDV 411

Query: 472 FGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
            G AG   EA DLIK MP+ PD+ +WGALL  CKIH  VEL E+ ++ L+  EPE  G Y
Sbjct: 412 LGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNY 471

Query: 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           +L++NIY+   +W++A ++RK M  R +KK  GCS +E+ G+ + F  GD SHP++ EIY
Sbjct: 472 VLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIY 531

Query: 592 KLLDEIMHQSKNHGYI 607
           + L+ +     + GY+
Sbjct: 532 EELERLEGLMSDAGYM 547



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 186/383 (48%), Gaps = 20/383 (5%)

Query: 33  SSKSVGQLKQFHAFIIKTG-SPQHQTQILYDKIISLSRGNEIENLS------LQNPQVYL 85
           +S+S+G  +Q H  ++ +G  P     +L  K++ L     +   +      +    V+L
Sbjct: 74  ASRSLGTGRQLHGRLLVSGLGPD---TVLATKLVDLYAACGLVGHARRLFDGMPKRNVFL 130

Query: 86  YNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N +I+  +   P E AI LYR M+  G+ P+ +T P  LKAC     L  G++VH   +
Sbjct: 131 WNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVL 190

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
            T    +++V   L+ +YA CG +     +F   +     RD V W ++I AY +   P 
Sbjct: 191 GTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIR----VRDSVVWNSMIAAYGQNGRPM 246

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264
           EA+    DM    + P    LV  +SA +    L  G ++H +     F+      +  +
Sbjct: 247 EALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDK--LKTS 304

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GLGLKP 323
           L+DMY K G +  AR +F+++  + +VSWN+MI G    G F EAL +F +M+    + P
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTP 364

Query: 324 DDFTLVCVLNSCANIGWL-ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
           D+ T V VL++C + G + E  ++    +D   I         LVD+    GR ++A+ +
Sbjct: 365 DNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDL 424

Query: 383 FRSMKCR-DVYSYTAMIVGLAIH 404
            + M  + D   + A++ G  IH
Sbjct: 425 IKGMPMQPDSGIWGALLNGCKIH 447


>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
          Length = 655

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/511 (35%), Positives = 281/511 (54%), Gaps = 42/511 (8%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQV---HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAV 171
           P    LP +L++  + +    G  V   HA +++T  L + +V   L   YA CG ++  
Sbjct: 147 PGPRALPALLRSAARCEG--AGAYVAATHALAVRTGALDDGFVGTALAGAYAACGCVRDT 204

Query: 172 HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231
            K+F       A RD+VSW  ++ +Y +     EA+L F  M  + + PD +IL  VL A
Sbjct: 205 RKVFD----GMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPA 260

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN----------------- 274
           C  +  L +G  IH Y+  +   +     I +ALI +Y  C N                 
Sbjct: 261 CGHIRHLRIGKAIHSYMLVSDMIIG--AHISSALISLYASCANMEMAEKLYNEMPRKDLV 318

Query: 275 --------------IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
                         +  AR +FD MP K+VVSW++MI+G     Q  EAL +F  MQ  G
Sbjct: 319 SSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECG 378

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           ++ D+ T++ V+++CAN+G L+  KW+H ++  + +N    I NAL+DM+AKCG I+ A 
Sbjct: 379 IRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLAL 438

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VF  M  ++V ++T+MI   A+HG    +L +F +M   G EP+EVTF+ +L AC HAG
Sbjct: 439 NVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAG 498

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
           LV EG   F  M + Y ++P+ EHYGCMVDL GRA L++EA+ LI+SM L P+  +WG+L
Sbjct: 499 LVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMHLEPNVPIWGSL 558

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
           L AC +H  ++L     + +++ +P  DGA +L+  IY   +    A ++R  MK  +V 
Sbjct: 559 LAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLLKIYMKSDNLNNAQEVRGVMKLHRVS 618

Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
           K  G S +E+   F+EF  G + HP++ +I+
Sbjct: 619 KETGLSWMELNEPFHEFAAGGEKHPESGKIF 649



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 173/340 (50%), Gaps = 35/340 (10%)

Query: 97  NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           N  EA+ L+ +M   G++P+   L  VL AC   + LR+G+ +H+Y + + ++   ++ +
Sbjct: 231 NYKEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISS 290

Query: 157 TLMRLYAVCGLIKAVHKLFH-----------------------------FRQHPQAQRDL 187
            L+ LYA C  ++   KL++                             F   P  ++D+
Sbjct: 291 ALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMP--EKDV 348

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
           VSW+ +I  YV  + P EA+  F  M +  +R D + ++ V+SAC+ LG L     IH +
Sbjct: 349 VSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAF 408

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
           I ++  N    + I NALIDM+ KCG I  A  VF+EMP+KNV++W SMI+     G  K
Sbjct: 409 IKNSGLN--KVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGK 466

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNAL 366
            +L +F +M+  G +P++ T + +L +C + G +  G+ + + + + + I         +
Sbjct: 467 SSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCM 526

Query: 367 VDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
           VD+  +   + +A  +  SM    +V  + +++    +HG
Sbjct: 527 VDLLGRAKLMQEAVSLIESMHLEPNVPIWGSLLAACWMHG 566



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 102/228 (44%), Gaps = 8/228 (3%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P EA++L+  M   G+  +  T+  V+ AC    SL   + +HA+   + L   +++ N 
Sbjct: 364 PNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNA 423

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ ++A CG I     +F    +    +++++WT++I A+        ++  F  M    
Sbjct: 424 LIDMFAKCGGINLALNVF----NEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEG 479

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277
             P+ +  + +L AC   G +  G  +   +    + + P    +  ++D+  +   +  
Sbjct: 480 AEPNEVTFLSLLYACCHAGLVHEGRLLFSSMV-QQYGIEPKHEHYGCMVDLLGRAKLMQE 538

Query: 278 ARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           A  + + M ++ NV  W S++A     G  K  L  F   + L L P+
Sbjct: 539 AVSLIESMHLEPNVPIWGSLLAACWMHGDLK--LGAFAAKKILQLDPN 584


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/531 (34%), Positives = 294/531 (55%), Gaps = 11/531 (2%)

Query: 78  LQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRV 135
           L+ P +  ++ ++     N +P +A+  +R M     + P+  TL  ++ AC +  + R+
Sbjct: 103 LEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRL 162

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G+ VH + M+    +++ + N+L+  YA     K    LF       A++D++SW+T+I 
Sbjct: 163 GRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKM----MAEKDVISWSTVIA 218

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
            YV+     EA+  F +M      P+   ++ VL AC+   DL  G K H         L
Sbjct: 219 CYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQGRKTHELAIRK--GL 276

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             +V +  AL+DMY+KC +   A  VF  +P K+VVSW ++I+G T  G    +++ F  
Sbjct: 277 ETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSI 336

Query: 316 MQ-GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           M      +PD   ++ VL SC+ +G+L+  +  H+Y+ K   +++ FIG +LV++Y++CG
Sbjct: 337 MLLENNTRPDAILMLKVLGSCSELGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCG 396

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVL 433
            +  A  VF  +  +D   +T++I G  IHGK  KAL+ F+ M +   ++P+EVTF+ +L
Sbjct: 397 SLGNASKVFNEIALKDTVVWTSLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSIL 456

Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD 493
           SACSHAGL+ EG + F  M   Y L P  EHY  +VDL GR G +  A+++ K MP  P 
Sbjct: 457 SACSHAGLIHEGLRIFELMVNDYRLAPNLEHYAVLVDLLGRVGELDTAIEITKRMPFSPT 516

Query: 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553
             + G LLGAC+IH   E+AE V + L   E    G Y+LM+N+Y  K  W+   KLR  
Sbjct: 517 PQILGTLLGACRIHQNGEMAETVAKQLFELESNHAGYYMLMSNMYGVKGEWENVEKLRNS 576

Query: 554 MKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI-MHQSKN 603
           +K+R +KK    SL+E+  + ++F   D  HP+   +Y LL E+ +H  +N
Sbjct: 577 VKQRGIKKGLAESLIEIRRKVHKFVADDDLHPEKEPVYGLLKELDLHMKEN 627



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/445 (29%), Positives = 233/445 (52%), Gaps = 14/445 (3%)

Query: 83  VYLYNFIIQCLSNANPLEAIAL-YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           +Y +N +++ LS     E +   + +M      P+ +TLP  LKAC + + ++ G+ +H 
Sbjct: 6   LYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYGEMIHG 65

Query: 142 YSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           +  K   L S++YV ++L+ +Y  CG +    ++F+  + P    D+V+W++++  + K 
Sbjct: 66  FLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKP----DIVTWSSMVSGFEKN 121

Query: 201 DYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
             P +A+  F  M  A ++ PD + L+ ++SAC+KL +  LG  +H ++    F  S D+
Sbjct: 122 GSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGF--SNDL 179

Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
            + N+L++ Y K      A  +F  M  K+V+SW+++IA     G   EAL +F  M   
Sbjct: 180 SLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDD 239

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G +P+  T++CVL +CA    LE G+  H    +  + T+  +  ALVDMY KC   ++A
Sbjct: 240 GTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEA 299

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSACSH 438
           + VF  +  +DV S+ A+I G  ++G A ++++ FS M  +    PD +  + VL +CS 
Sbjct: 300 YAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSE 359

Query: 439 AGLVEEG-CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
            G +++  C H   +   ++  P       +V+L+ R G +  A  +   + L  D  VW
Sbjct: 360 LGFLKQAECFHSYVIKYGFDSNPFIG--ASLVELYSRCGSLGNASKVFNEIAL-KDTVVW 416

Query: 498 GALLGACKIHAKVELAEIVMENLVR 522
            +L+    IH K   A     ++VR
Sbjct: 417 TSLITGYGIHGKGTKALETFNHMVR 441



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 205/401 (51%), Gaps = 22/401 (5%)

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            +R L  W TL+++  +  +  + +  F  M +   +PD   L + L AC +L ++  G 
Sbjct: 2   TKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYGE 61

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            IH ++  N   L  D+++ ++LI MY+KCG +  A ++F+E+   ++V+W+SM++G   
Sbjct: 62  MIHGFLKKN-VTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEK 120

Query: 303 RGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
            G   +A++ FRRM     + PD  TL+ ++++C  +    LG+ VH ++ +   + D  
Sbjct: 121 NGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLS 180

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           + N+L++ YAK     +A  +F+ M  +DV S++ +I     +G A +AL +F+EM   G
Sbjct: 181 LVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDG 240

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
            EP+  T + VL AC+ A  +E+G K H L + +   L+ + +    +VD++ +     E
Sbjct: 241 TEPNVATVLCVLQACAAANDLEQGRKTHELAIRK--GLETEVKVSTALVDMYMKCFSPEE 298

Query: 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKV-----ELAEIVMENLVRFEPEGDGAYILMT 535
           A  +   +P   D   W AL+    ++        E + +++EN  R  P+     ILM 
Sbjct: 299 AYAVFSRIP-KKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTR--PDA----ILML 351

Query: 536 NIYSSKNR---WKEALKLRKKMKERKVKKTP--GCSLVEVY 571
            +  S +     K+A      + +      P  G SLVE+Y
Sbjct: 352 KVLGSCSELGFLKQAECFHSYVIKYGFDSNPFIGASLVELY 392



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 120/226 (53%), Gaps = 7/226 (3%)

Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
           M  + +  WN+++  L+    +++ +  F +M     KPD+FTL   L +C  +  ++ G
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYG 60

Query: 345 KWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI 403
           + +H +L KN  + +D ++G++L+ MY KCGR+ +A  +F  ++  D+ ++++M+ G   
Sbjct: 61  EMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEK 120

Query: 404 HGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSRVYNLQPQ 461
           +G  ++A++ F  M+    + PD VT + ++SAC+       G C H   M R ++    
Sbjct: 121 NGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFS--ND 178

Query: 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
                 +++ + ++   +EA++L K M    D   W  ++ AC + 
Sbjct: 179 LSLVNSLLNCYAKSRAFKEAVNLFKMMA-EKDVISWSTVI-ACYVQ 222


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 184/509 (36%), Positives = 294/509 (57%), Gaps = 8/509 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+  +  +    L P+  +L  +L A  +   L  G+++HAY+MK  L SN+ + NTL+
Sbjct: 196 EALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLI 255

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ C  +     +F         +DL+SWTT+I AY + +  TEA+     +    + 
Sbjct: 256 DMYSKCCCVAYAGLVFD----KMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMD 311

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            D M++   L ACS L  LS   ++H Y      +   D+ + N +ID+Y  CGNI  A 
Sbjct: 312 VDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS---DLMMQNMIIDVYADCGNINYAT 368

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++F+ +  K+VVSW SMI+   H G   EAL +F  M+   ++PD  TLV +L++ A++ 
Sbjct: 369 RMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLS 428

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L  GK +H ++ +     +G   N+LVDMYA CG ++ A+ VF   + + +  +T MI 
Sbjct: 429 ALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMIN 488

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
              +HG+   A+++FS M    + PD +TF+ +L ACSH+GL+ EG +    M   Y L+
Sbjct: 489 AYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLE 548

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  EHY C+VDL GRA  + EA   +KSM + P A VW A LGAC+IH+  +L EI  + 
Sbjct: 549 PWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQK 608

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           L+  +P+  G+Y+L++N++++  RWK+  ++R +MK   +KK PGCS +EV  + + F  
Sbjct: 609 LLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLV 668

Query: 580 GDKSHPKTLEIYKLLDEIMHQ-SKNHGYI 607
            DKSHP++ +IY+ L +I  +  K  GY+
Sbjct: 669 RDKSHPESYKIYQKLAQITEKLEKEGGYV 697



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 159/556 (28%), Positives = 268/556 (48%), Gaps = 50/556 (8%)

Query: 42  QFHAFIIKTGSPQ-----HQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLS-N 95
           + H  IIK G        +    +Y K   +    ++ +   +   V  +N II   S N
Sbjct: 31  EIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLN 90

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
              +EA+ L+REM   G+  NTYTL   L+AC  S   ++G ++HA  +K+  + +VYV 
Sbjct: 91  GQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVA 150

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ ++   G +    ++F        ++D ++W ++I  + +     EA+  F  +  
Sbjct: 151 NALVAMHVRFGKMSYAARIF----DELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQD 206

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
           ANL+PD + L+ +L+A  +LG L  G +IH Y   N   L  ++ I N LIDMY KC  +
Sbjct: 207 ANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNW--LDSNLRIGNTLIDMYSKCCCV 264

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A  VFD+M  K+++SW ++IA         EAL + R++Q  G+  D   +   L +C
Sbjct: 265 AYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLAC 324

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           + +  L   K VH Y  K  + +D  + N ++D+YA CG I+ A  +F S+KC+DV S+T
Sbjct: 325 SGLRCLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWT 383

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLDMSR 454
           +MI     +G A +AL +F  M +  +EPD +T V +LSA +    + +G + H     +
Sbjct: 384 SMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRK 443

Query: 455 VYNLQPQT-----EHYGC------------------------MVDLFGRAGLIREALDLI 485
            + L+  T     + Y C                        M++ +G  G  + A++L 
Sbjct: 444 GFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELF 503

Query: 486 KSMP---LVPDAFVWGALLGACKIHAKVELAEIVMENL---VRFEPEGDGAYILMTNIYS 539
             M    L+PD   + ALL AC     +   + ++E +    + EP  +  Y  + ++  
Sbjct: 504 SIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPE-HYACLVDLLG 562

Query: 540 SKNRWKEALKLRKKMK 555
             N  +EA    K M+
Sbjct: 563 RANHLEEAYHFVKSMQ 578



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/407 (31%), Positives = 212/407 (52%), Gaps = 23/407 (5%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           M + G+  +++T P VLKAC   + +  G ++H   +K    S V+V N+L+ +YA C  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227
           I    KLF        + D+VSW ++I AY       EA+  F +M +A +  +   LV 
Sbjct: 61  ILGARKLF---DRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVA 117

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
            L AC       LG++IH  I  +  N   DV++ NAL+ M+++ G +  A ++FDE+  
Sbjct: 118 ALQACEDSSFKKLGMEIHAAILKS--NQVLDVYVANALVAMHVRFGKMSYAARIFDELDE 175

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
           K+ ++WNSMIAG T  G + EAL  F  +Q   LKPD+ +L+ +L +   +G+L  GK +
Sbjct: 176 KDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEI 235

Query: 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKA 407
           H Y  KN ++++  IGN L+DMY+KC  +  A  VF  M  +D+ S+T +I   A +   
Sbjct: 236 HAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCH 295

Query: 408 WKALDIFSEMSQVGIEPDEVTFVGVLSAC------SHAGLVEEGCKHFLDMSR-VYNLQP 460
            +AL +  ++   G++ D +     L AC      SHA  V     H   + R + +L  
Sbjct: 296 TEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEV-----HGYTLKRGLSDLMM 350

Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507
           Q      ++D++   G I  A  + +S+    D   W +++ +C +H
Sbjct: 351 QNM----IIDVYADCGNINYATRMFESIK-CKDVVSWTSMI-SCYVH 391


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/496 (37%), Positives = 288/496 (58%), Gaps = 9/496 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E + L+  M    + P+  TL  V+ AC      R+G+ +HAY + T    ++ V N+L 
Sbjct: 280 EGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLT 339

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
           ++Y   G  +   KLF   +    ++D+VSWTT+I  Y     P +AI ++  M Q +++
Sbjct: 340 QMYLNAGSWREAEKLFSRME----RKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVK 395

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + +  VLSAC+ LGDL  G+++H+        L   V + N LI+MY KC  I  A 
Sbjct: 396 PDEITVAAVLSACATLGDLDTGVELHKLAIKAR--LISYVIVANNLINMYSKCKCIDKAL 453

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
            +F  +P KNV+SW S+IAGL    +  EAL IF R   + L+P+  TL   L +CA IG
Sbjct: 454 DIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITLTAALAACARIG 512

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L  GK +H ++ +  +  D F+ NAL+DMY +CGR++ A+  F S K +DV S+  ++ 
Sbjct: 513 ALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLT 571

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G +  G+    +++F  M +  + PDE+TF+ +L  CS + +V +G  +F  M   Y + 
Sbjct: 572 GYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMED-YGVT 630

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  +HY C+VDL GRAG ++EA   I+ MP+ PD  VWGALL AC+IH K++L E+  ++
Sbjct: 631 PNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQH 690

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           +   + +  G YIL+ N+Y+   +W+E  K+R+ MKE  +    GCS VEV G+ + F  
Sbjct: 691 IFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLS 750

Query: 580 GDKSHPKTLEIYKLLD 595
            DK HP+T EI  +L+
Sbjct: 751 DDKYHPQTKEINTVLE 766



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 183/327 (55%), Gaps = 8/327 (2%)

Query: 100 EAIALYREML-IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158
           EA+ LY  ML + G+ P+ YT P VL+ C     L  G++VH + ++     ++ V N L
Sbjct: 178 EAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNAL 237

Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
           + +Y  CG +K+   LF        +RD++SW  +I  Y +     E +  FF M   ++
Sbjct: 238 ITMYVKCGDVKSARLLF----DRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSV 293

Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            PD M L  V+SAC  LGD  LG  IH Y+    F  + D+ + N+L  MYL  G+   A
Sbjct: 294 DPDLMTLTSVISACELLGDRRLGRDIHAYVITTGF--AVDISVCNSLTQMYLNAGSWREA 351

Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
            K+F  M  K++VSW +MI+G  +     +A+D +R M    +KPD+ T+  VL++CA +
Sbjct: 352 EKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATL 411

Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
           G L+ G  +H    K  + +   + N L++MY+KC  ID+A  +F ++  ++V S+T++I
Sbjct: 412 GDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSII 471

Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPD 425
            GL ++ + ++AL IF    ++ ++P+
Sbjct: 472 AGLRLNNRCFEAL-IFLRQMKMTLQPN 497



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 217/430 (50%), Gaps = 13/430 (3%)

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
           +N    EA+ L   M    +  +      +++ C   ++   G +V++ ++ +     V 
Sbjct: 71  ANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVE 130

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           + N  + ++   G +     +F       ++R+L SW  L+  Y K  Y  EA+  +  M
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFG----KMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRM 186

Query: 214 CQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
                ++PD      VL  C  + DL+ G ++H ++    + L  DV   NALI MY+KC
Sbjct: 187 LWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVV--NALITMYVKC 244

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G++ SAR +FD MP ++++SWN+MI+G    G   E L++F  M+GL + PD  TL  V+
Sbjct: 245 GDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVI 304

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           ++C  +G   LG+ +H Y+       D  + N+L  MY   G   +A  +F  M+ +D+ 
Sbjct: 305 SACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIV 364

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK-HFLD 451
           S+T MI G   +    KA+D +  M Q  ++PDE+T   VLSAC+  G ++ G + H L 
Sbjct: 365 SWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLA 424

Query: 452 M-SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
           + +R+ +      +   +++++ +   I +ALD+  ++P   +   W +++   +++ + 
Sbjct: 425 IKARLISYVIVANN---LINMYSKCKCIDKALDIFHNIPR-KNVISWTSIIAGLRLNNRC 480

Query: 511 ELAEIVMENL 520
             A I +  +
Sbjct: 481 FEALIFLRQM 490



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 161/324 (49%), Gaps = 17/324 (5%)

Query: 84  YLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
           Y YNF+        P +AI  YR M    + P+  T+  VL AC     L  G ++H  +
Sbjct: 373 YEYNFL--------PDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLA 424

Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           +K  L+S V V N L+ +Y+ C  I     +F    H   +++++SWT++I A ++++  
Sbjct: 425 IKARLISYVIVANNLINMYSKCKCIDKALDIF----HNIPRKNVISWTSII-AGLRLNNR 479

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
               L F    +  L+P+ + L   L+AC+++G L  G +IH ++      L  D F+ N
Sbjct: 480 CFEALIFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGL--DDFLPN 537

Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
           AL+DMY++CG + +A   F+    K+V SWN ++ G + RGQ    +++F RM    ++P
Sbjct: 538 ALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRP 596

Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
           D+ T + +L  C+    +  G    + ++   +  +      +VD+  + G + +A    
Sbjct: 597 DEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFI 656

Query: 384 RSMKCR-DVYSYTAMIVGLAIHGK 406
           + M    D   + A++    IH K
Sbjct: 657 QKMPVTPDPAVWGALLNACRIHHK 680


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 178/498 (35%), Positives = 276/498 (55%), Gaps = 25/498 (5%)

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLY--------------AV 164
           +LP  LK+C       +G  +HA ++++   ++ +  N L+ LY              +V
Sbjct: 53  SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSV 112

Query: 165 CGL-----IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            G      +++V K+F        +RD+VSW TL+    +     EA++    M +   R
Sbjct: 113 GGTGSSTALESVRKVFD----EMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFR 168

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD   L  VL   ++  D+  G ++H +   N F+   DVF+ ++LIDMY  C     + 
Sbjct: 169 PDSFTLSSVLPIFAECADVKRGSEVHGFAVRNGFD--NDVFVGSSLIDMYANCTRTDYSV 226

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVFD +PV++ + WNS++AG    G  +EAL IFRRM   G++P   T   ++  C N+ 
Sbjct: 227 KVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLA 286

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L  GK +H Y+ +     + FI ++L+DMY KCG I  A  +F  M   DV S+TAMI+
Sbjct: 287 SLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIM 346

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G A+HG A +AL +F  M     +P+ +TF+ VL+ACSHAGLV++G K+F  MS  Y + 
Sbjct: 347 GYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIV 406

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  EH   + D+ GRAG + EA + I  M + P A VW  LL AC++H    LAE V + 
Sbjct: 407 PTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKK 466

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           ++  EP   G++++++N+YS+  RW EA  LRK M+++ +KK P CS +EV  + + F  
Sbjct: 467 IMELEPRSIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSWIEVKNKLHVFVA 526

Query: 580 GDKSHPKTLEIYKLLDEI 597
            D+SHP  +E   L + +
Sbjct: 527 HDRSHPCCIECSTLSEHL 544



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 170/350 (48%), Gaps = 10/350 (2%)

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
             ++ C       EA+ L R+M  +G  P+++TL  VL    +   ++ G +VH ++++ 
Sbjct: 141 TLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSEVHGFAVRN 200

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
              ++V+V ++L+ +YA C       K+F         RD + W +++    +     EA
Sbjct: 201 GFDNDVFVGSSLIDMYANCTRTDYSVKVF----DNLPVRDPILWNSVLAGCAQNGSVEEA 256

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F  M Q  +RP  +    ++  C  L  L  G ++H Y+    F    +VFI ++LI
Sbjct: 257 LGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFE--DNVFISSSLI 314

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           DMY KCG I  A  +FD M   +VVSW +MI G    G  +EAL +F RM+    KP+  
Sbjct: 315 DMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHI 374

Query: 327 TLVCVLNSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385
           T + VL +C++ G ++ G K+  +  D   I        AL D+  + G +D+A+     
Sbjct: 375 TFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGELDEAYNFISK 434

Query: 386 MKCRDVYS-YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
           M+ +   S ++ ++    +H     A ++  ++ +  +EP  +    VLS
Sbjct: 435 MQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIME--LEPRSIGSHVVLS 482



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 133/277 (48%), Gaps = 15/277 (5%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTG--SPQHQTQILYDKIISLSRGNE----IENLSLQNPQ 82
           P       V +  + H F ++ G  +       L D   + +R +      +NL +++P 
Sbjct: 179 PIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDP- 237

Query: 83  VYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
             L+N ++  C  N +  EA+ ++R ML  G+ P   T   ++  C    SLR G+Q+HA
Sbjct: 238 -ILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHA 296

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           Y ++     NV++ ++L+ +Y  CG I   H +F     P    D+VSWT +I  Y    
Sbjct: 297 YVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSP----DVVSWTAMIMGYALHG 352

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
              EA++ F  M   N +P+ +  + VL+ACS  G +  G K  + ++D H+ + P +  
Sbjct: 353 PAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSD-HYGIVPTLEH 411

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVS-WNSMI 297
             AL D+  + G +  A     +M +K   S W++++
Sbjct: 412 CAALADILGRAGELDEAYNFISKMQIKPTASVWSTLL 448



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 104/250 (41%), Gaps = 25/250 (10%)

Query: 286 PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF--TLVCVLNSCANIGWLEL 343
           P    +SW   I     +G F++A+ +F RM+           +L   L SCA +G   L
Sbjct: 10  PWPPPLSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSAL 69

Query: 344 GKWVHTYLDKNHINTDGFIGNALVDMYAK--CG-----------------RIDQAFGVFR 384
           G  +H    ++    D F  NAL+++Y K  C                   ++    VF 
Sbjct: 70  GASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFD 129

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            M  RDV S+  +++G A  G+  +AL +  +M + G  PD  T   VL   +    V+ 
Sbjct: 130 EMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKR 189

Query: 445 GCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
           G +  +    V N        G  ++D++        ++ +  ++P V D  +W ++L  
Sbjct: 190 GSE--VHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLP-VRDPILWNSVLAG 246

Query: 504 CKIHAKVELA 513
           C  +  VE A
Sbjct: 247 CAQNGSVEEA 256


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 293/523 (56%), Gaps = 46/523 (8%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL------IK 169
           +T  +  VL  C     LR   Q+HA  +KT LL++ +   T+ RL A C L      + 
Sbjct: 5   STNPVVSVLDKCKSLCELR---QIHAQMIKTNLLNHQF---TVSRLIAFCSLSGVSGGLD 58

Query: 170 AVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI-- 227
               +F   QHP +      +  LI+ +     P E+++ +  M        G+   I  
Sbjct: 59  YASSVFSRIQHPNS----FIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPS 114

Query: 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV 287
           VL AC KL     G ++H  +   H    P  F+ N+++ MY+  G I  AR+VFD MP 
Sbjct: 115 VLKACGKLLAFDEGRQVHGQVLKTHLWFDP--FVGNSMVRMYIDFGEIELARRVFDRMPN 172

Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIF-------------------RRMQGLGLKPDDFTL 328
           ++VVSWNSMIAG    G+ + A ++F                   + M  LGL+PD   +
Sbjct: 173 RDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAI 232

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHIN-TDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
           V VL++ A++G++E GKW+H Y+  N I  + GFIG+AL+DMY+KCG I+ A+ VFRS+ 
Sbjct: 233 VSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSIS 292

Query: 388 CR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
            R ++  + +MI GLAIHG A +ALDIF EM ++ IEP+E+TF+G+LS CSH GLVEEG 
Sbjct: 293 HRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQ 352

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
            +F  M   Y + P+ +HYGCM+DLFGRAG + +AL +I++MP   D   W A+L A   
Sbjct: 353 FYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMK 412

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
           H  +E+ +      +   P+   +Y+L++NIY+   RW +  K+R  M++R VKK  GCS
Sbjct: 413 HGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCS 472

Query: 567 LVEVYGEFYEFRKG---DKSHPKTLEIYKLLDEIMHQSKNHGY 606
            + V G+ +EF  G   D S+    ++   + E++ + K  GY
Sbjct: 473 SMLVNGKVHEFLLGKELDSSYSG--QVLAKIAEVVSRLKLQGY 513



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/407 (30%), Positives = 217/407 (53%), Gaps = 37/407 (9%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQ----ILYDKIISLSRGNEIENL---SLQNPQV 83
           L+  KS+ +L+Q HA +IKT    HQ      I +  +  +S G +  +     +Q+P  
Sbjct: 13  LDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNS 72

Query: 84  YLYNFIIQCLSN-ANPLEAIALYREML--IKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           +++  +I+  S+ +NP+E++ LY  ML  +       +++P VLKAC +  +   G+QVH
Sbjct: 73  FIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVH 132

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
              +KT L  + +V N+++R+Y   G I+   ++F         RD+VSW ++I  Y+K 
Sbjct: 133 GQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVF----DRMPNRDVVSWNSMIAGYLKA 188

Query: 201 -----------DYPTEAILSFF--------DMCQANLRPDGMILVIVLSACSKLGDLSLG 241
                      + P   ++S          +M    LRPDG  +V VLSA + LG +  G
Sbjct: 189 GEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVEEG 248

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMIAGL 300
             +H Y++ N   LS   FI +ALIDMY KCG I +A  VF  +   +N+  WNSMI+GL
Sbjct: 249 KWLHAYVSMNKIELSSG-FIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGL 307

Query: 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK-WVHTYLDKNHINTD 359
              G  +EALDIF  M+ + ++P++ T + +L++C++ G +E G+ +  +  +K  I   
Sbjct: 308 AIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPR 367

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
                 ++D++ + GR++ A GV ++M    D+ ++ A++     HG
Sbjct: 368 IQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHG 414


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 206/585 (35%), Positives = 318/585 (54%), Gaps = 31/585 (5%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQH------QTQILYDKIISLSRGNEIENLSLQNPQVY 84
           LES K++ +L Q  + +I +G  QH        + L    ++  R   + +  L +P  +
Sbjct: 14  LESWKNLHELNQVLSQLIVSGLSQHPLFATSAIKKLCSHSVTFPRATFLFD-HLHHPDAF 72

Query: 85  LYNFIIQCLSNANPLEAIA--LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
             N II+  +      A     Y +ML + + PN YT P ++K C    S R G + HA 
Sbjct: 73  HCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLKGHAR 132

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +K    S+++  N+L+R+Y+V G I     +F          DLVS+ ++I  YVK   
Sbjct: 133 IVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFD----ESCWLDLVSYNSMIDGYVKNGE 188

Query: 203 PTEAILSFFDMCQANLRPDGMILV--IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
              A   F +M      PD  +L    +++    +GDL    ++   I +       D  
Sbjct: 189 IGAARKVFNEM------PDRDVLSWNCLIAGYVGVGDLDAANELFETIPER------DAV 236

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMP--VKNVVSWNSMIAGLTHRGQFKEALDIFRRM-Q 317
             N +ID   + GN+  A K FD MP  V+NVVSWNS++A       + E L +F +M +
Sbjct: 237 SWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVE 296

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
           G    P++ TLV VL +CAN+G L +G WVH+++  N+I  D  +   L+ MYAKCG +D
Sbjct: 297 GREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMD 356

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A GVF  M  R V S+ +MI+G  +HG   KAL++F EM + G +P++ TF+ VLSAC+
Sbjct: 357 LAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACT 416

Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
           HAG+V EG  +F  M RVY ++P+ EHYGCMVDL  RAGL+  + +LI+ +P+   + +W
Sbjct: 417 HAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIW 476

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
           GALL  C  H   EL EIV +  +  EP+  G YIL++N+Y++K RW +   +R  +KE+
Sbjct: 477 GALLSGCSNHLDSELGEIVAKRFIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLMIKEK 536

Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
            ++K    SLV +     ++ K +  + K + +Y +L E+  Q K
Sbjct: 537 GLQKEAASSLVHLEDFESKYVKNNSGYRKKI-MYSMLSELGTQMK 580


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 171/515 (33%), Positives = 284/515 (55%), Gaps = 29/515 (5%)

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF---- 175
             ++L++C    SL +G+Q+H+  + +   S+ ++ N L+ LY+ CG +     LF    
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMP 114

Query: 176 -------------HFRQ----------HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
                        +FR               +R++ +W  ++   ++ ++  E +  F  
Sbjct: 115 RKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSR 174

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M +    PD   L  VL  C+ L  L  G ++H Y+    F    ++ + ++L  MY+KC
Sbjct: 175 MNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEF--NLVVVSSLAHMYMKC 232

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G++    ++   MP +NVV+WN++IAG    G  +E LD +  M+  G +PD  T V V+
Sbjct: 233 GSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVI 292

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
           +SC+ +  L  G+ +H  + K   +    + ++L+ MY++CG ++ +  VF   +  DV 
Sbjct: 293 SSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVV 352

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            +++MI     HG+  +A+D+F++M Q  +E ++VTF+ +L ACSH GL E+G K F  M
Sbjct: 353 CWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLM 412

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              Y ++P+ EHY CMVDL GR G + EA  LI+SMP+  D   W  LL ACKIH K E+
Sbjct: 413 VEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEM 472

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
           A  + E + R +P     Y+L++NI++S  RW +   +RK M++RK+KK PG S +EV  
Sbjct: 473 ARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKN 532

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           + ++F  GDKSHPK++EI   L E+  + K  GY+
Sbjct: 533 QIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYV 567



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 171/334 (51%), Gaps = 11/334 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           E + L+  M   G LP+ + L  VL+ C   ++L  G+QVH Y  K     N+ V ++L 
Sbjct: 167 EGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLA 226

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y  CG +    +L   R  P   +++V+W TLI    +  YP E +  +  M  A  R
Sbjct: 227 HMYMKCGSLGEGERL--IRAMP--SQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFR 282

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD +  V V+S+CS+L  L  G +IH  +     +L   V   ++LI MY +CG +  + 
Sbjct: 283 PDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVI--SSLISMYSRCGCLEYSL 340

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVF E    +VV W+SMIA     G+  EA+D+F +M+   L+ +D T + +L +C++ G
Sbjct: 341 KVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCG 400

Query: 340 WLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAM 397
             E G K+    ++K  +         +VD+  + G +++A  + RSM  + DV ++  +
Sbjct: 401 LKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTL 460

Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFV 430
           +    IH K   A  I  E+ +  ++P D V +V
Sbjct: 461 LSACKIHKKTEMARRISEEVFR--LDPRDPVPYV 492



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 155/330 (46%), Gaps = 35/330 (10%)

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
           FD   +++  +  +   +L +C     LSLG ++H  I  +    S D FI N L+++Y 
Sbjct: 41  FDRFSSHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITS--GCSSDKFISNHLLNLYS 98

Query: 271 KCGNIP-------------------------------SARKVFDEMPVKNVVSWNSMIAG 299
           KCG +                                +ARK+FDEMP +NV +WN+M+AG
Sbjct: 99  KCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAG 158

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
           L      +E L +F RM  LG  PD+F L  VL  CA +  L  G+ VH Y+ K     +
Sbjct: 159 LIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFN 218

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             + ++L  MY KCG + +   + R+M  ++V ++  +I G A +G   + LD ++ M  
Sbjct: 219 LVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKM 278

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G  PD++TFV V+S+CS    + +G +   ++ +             ++ ++ R G + 
Sbjct: 279 AGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKA-GASLIVSVISSLISMYSRCGCLE 337

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAK 509
            +L +        D   W +++ A   H +
Sbjct: 338 YSLKVFLECE-NGDVVCWSSMIAAYGFHGR 366



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 128/267 (47%), Gaps = 15/267 (5%)

Query: 41  KQFHAFIIKTGSPQHQTQI-----LYDKIISLSRGNE-IENLSLQNPQVYLYNFIIQCLS 94
           +Q H ++ K G   +   +     +Y K  SL  G   I  +  QN  V  +N +I   +
Sbjct: 204 RQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQN--VVAWNTLIAGRA 261

Query: 95  -NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
            N  P E +  Y  M + G  P+  T   V+ +C +  +L  GQQ+HA  +K      V 
Sbjct: 262 QNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVS 321

Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
           V ++L+ +Y+ CG ++   K+F   ++     D+V W+++I AY       EAI  F  M
Sbjct: 322 VISSLISMYSRCGCLEYSLKVFLECENG----DVVCWSSMIAAYGFHGRGVEAIDLFNQM 377

Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
            Q  L  + +  + +L ACS  G    GIK    + +  + + P +  +  ++D+  + G
Sbjct: 378 EQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEK-YGVKPRLEHYTCMVDLLGRYG 436

Query: 274 NIPSARKVFDEMPVK-NVVSWNSMIAG 299
           ++  A  +   MPVK +V++W ++++ 
Sbjct: 437 SVEEAEALIRSMPVKADVITWKTLLSA 463



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 38/259 (14%)

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
           P  R+ F   P        +    L  +G  K+A D F     +  +P  F+ +  L SC
Sbjct: 8   PLTRRHFSTNPSSGS-ELTAEFTNLCSKGHLKQAFDRFS--SHIWSEPSLFSHL--LQSC 62

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA---FGV---------- 382
            +   L LGK +H+ +  +  ++D FI N L+++Y+KCG++D A   FGV          
Sbjct: 63  ISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCN 122

Query: 383 ------FRS------------MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424
                 FRS            M  R+V ++ AM+ GL       + L +FS M+++G  P
Sbjct: 123 ILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLP 182

Query: 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484
           DE     VL  C+    +  G +      R    +        +  ++ + G + E   L
Sbjct: 183 DEFALGSVLRGCAGLRALVAG-RQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERL 241

Query: 485 IKSMPLVPDAFVWGALLGA 503
           I++MP   +   W  L+  
Sbjct: 242 IRAMP-SQNVVAWNTLIAG 259


>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 491

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 162/418 (38%), Positives = 259/418 (61%), Gaps = 29/418 (6%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
            R    W T+I+A+ + + P +AI+ F +M  +N  P+      +  AC+ L +L LG+ 
Sbjct: 73  HRSTFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLA 132

Query: 244 IH-----------RYITDNH----------------FNLSP--DVFIHNALIDMYLKCGN 274
            H            ++ +                  F+LS   DV    ALI+ Y++ G 
Sbjct: 133 CHCQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQ 192

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           +   R++FD+MP +N VSW++MI G    G F+EAL++F  M   G  P+   +VC +N+
Sbjct: 193 VLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINA 252

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA++G L+ G+W+H Y+ +N ++ D  +G AL+DMYAKCG I+ A  +F  ++ RDV+ Y
Sbjct: 253 CASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVY 312

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
           T +I GLA HG++  A+++F  M   G+ P+EVTFV VL+ACS  GLV++G + F +MS+
Sbjct: 313 TCLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSK 372

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
           +Y  +PQ +HYGC+VDL GRAG + EA  L+K MP+ PD++V GALL A +++  VEL E
Sbjct: 373 IYGDEPQVQHYGCLVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALLNASRVYGDVELGE 432

Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
             +E+L +   +  G +++++N+Y+S N+W E  ++R+ M ++KV+K PGCSL++V G
Sbjct: 433 ETVESLAQLSLDHSGVHVVLSNMYASANKWDEVARVRRGMGDKKVRKVPGCSLIKVDG 490



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 209/442 (47%), Gaps = 49/442 (11%)

Query: 31  LESSKSVGQLKQFHAFIIKTGS---PQHQTQI-----LYDKIISLSRGNEIENLSLQNPQ 82
           L+  +++ Q+KQ    +  +G+   P    +I     L     SLS    +  L L++  
Sbjct: 17  LDKCRTISQIKQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLF-LGLRHRS 75

Query: 83  VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
            +++N +I+  +  N P +AI L++ ML    LPN YT  ++ KAC    +L +G   H 
Sbjct: 76  TFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHC 135

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA------------------ 183
            S+K       +V N L+ ++A+ G + +  KLF    +                     
Sbjct: 136 QSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLI 195

Query: 184 ---------QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234
                    +R+ VSW+ +I  YV++ +  EA+  F  M  +   P+   +V  ++AC+ 
Sbjct: 196 GRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACAS 255

Query: 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294
           LG L  G  IH YI  N  +L  D  +  ALIDMY KCG I  A  +F E+  ++V  + 
Sbjct: 256 LGALDQGRWIHCYIKRNRMDL--DRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYT 313

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV-----HT 349
            +I+GL + GQ   A+++F RM   G+ P++ T V VLN+C+ +G ++ G  +       
Sbjct: 314 CLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKI 373

Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAW 408
           Y D+  +   G     LVD+  + G++++A  + + M  + D Y   A++    ++G   
Sbjct: 374 YGDEPQVQHYG----CLVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALLNASRVYGDVE 429

Query: 409 KALDIFSEMSQVGIEPDEVTFV 430
              +    ++Q+ ++   V  V
Sbjct: 430 LGEETVESLAQLSLDHSGVHVV 451


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 303/548 (55%), Gaps = 56/548 (10%)

Query: 98  PLEAIALYREMLIK-GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156
           P  A++L+REM +  G+LP+T  +  +L  C        G+QVH + +++ L+ +V+V N
Sbjct: 211 PNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGN 270

Query: 157 TLMRLYAVCGLIKAVHKLFH---FR----------------------------QHPQAQR 185
            L+ +YA CG ++  +K+F    F+                            +  + + 
Sbjct: 271 ALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIES 330

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           D+V+W+++I  Y +  +  EA+  F  MC    RP+ + L+ +LSAC+ +G L  G + H
Sbjct: 331 DVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETH 390

Query: 246 RY-----ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN--VVSWNSMIA 298
            Y     +   H + + D+ + NALIDMY KC ++  AR +FDE+  K+  VV+W  MI 
Sbjct: 391 CYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIG 450

Query: 299 GLTHRGQFKEALDIFRRMQGLG--LKPDDFTLVCVLNSCANIGWLELGKWVHTY-LDKNH 355
           G    G    AL +F  M  +   + P+DFT+ CVL +CA +  L+ GK +H Y L ++ 
Sbjct: 451 GYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSR 510

Query: 356 INTDG-FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
           I++D  F+ N L+DMY+K G +D A  VF SM  R+  S+T+++ G  +HG++  A  +F
Sbjct: 511 IDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVF 570

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            EM +  +  D +TF+ VL ACSH+G+              + + P  EHY CMVDL GR
Sbjct: 571 DEMRKEALVLDGITFLVVLYACSHSGMD-------------FGVDPGVEHYACMVDLLGR 617

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           AG + EA+ LI  MP+ P   VW ALL AC+IH+  ELAE   + L+  + + DG Y L+
Sbjct: 618 AGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLLELKADNDGTYTLL 677

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           +NIY++  RWK+  ++   MK   +KK PG S V+       F  GD++H ++ +IY+ L
Sbjct: 678 SNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGMETFYVGDRTHLQSQKIYETL 737

Query: 595 DEIMHQSK 602
            +++ + K
Sbjct: 738 ADLIKRIK 745



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 172/577 (29%), Positives = 275/577 (47%), Gaps = 63/577 (10%)

Query: 16  INTFQQLSLLHQSP-RLESSKSVGQLKQFHAFIIKTG----SPQHQTQILYDKIISLSRG 70
           INT   L L H S    +  K++ Q K  H   I  G    S  + T ++Y  I S S  
Sbjct: 16  INT-HNLLLYHSSTISKQQCKTLTQAKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSIT 74

Query: 71  NEI----ENLSLQNPQVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLK 125
           N I    +N++  +  VY +N +I+  L   +P  A+ L+R M      P+ YT P+V K
Sbjct: 75  NAILLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFK 134

Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
           AC +  +  +G  +H   ++    SNV+V N ++ +Y  C  +    K+F    + +   
Sbjct: 135 ACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCY-RGIC 193

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKI 244
           D V+W +++  Y     P  A+  F +M     + PD + +V +L  C  LG    G ++
Sbjct: 194 DSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQV 253

Query: 245 HRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304
           H +   +   L  DVF+ NAL+DMY KCG +  A KVF+ M  K+VV+WN+M+ G +  G
Sbjct: 254 HGFCVRS--GLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNG 311

Query: 305 QFK-----------------------------------EALDIFRRMQGLGLKPDDFTLV 329
           +F+                                   EA+D+FR+M G   +P+  TL+
Sbjct: 312 RFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLM 371

Query: 330 CVLNSCANIGWLELGKWVHTYLDK-------NHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            +L++CA++G L  GK  H Y  K       N    D  + NAL+DMYAKC  ++ A  +
Sbjct: 372 SLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAM 431

Query: 383 FRSM--KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG--IEPDEVTFVGVLSACSH 438
           F  +  K RDV ++T MI G A HG A  AL +FSEM ++   I P++ T   VL AC+ 
Sbjct: 432 FDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACAR 491

Query: 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
              ++ G +    + R   +         C++D++ ++G +  A  +  SM    +A  W
Sbjct: 492 LAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS-KRNAVSW 550

Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
            +LL    +H + E A  V + + +     DG   L+
Sbjct: 551 TSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLV 587



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 159/390 (40%), Gaps = 70/390 (17%)

Query: 245 HRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV---KNVVSWNSMIAGLT 301
            +YI + H  L+    + N LI  Y+   +I +A  + ++       +V  WN +I    
Sbjct: 45  QQYIINGHL-LNSYTNVTN-LIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLIRHAL 102

Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
           H      AL +FRRM+ L   PD +T   V  +C  I   ELG  +H  + +    ++ F
Sbjct: 103 HFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVF 162

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW---KALDIFSEMS 418
           + NA++ MY KC  +  A  VF  +  R +         ++++   +    A+ +F EM+
Sbjct: 163 VCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMT 222

Query: 419 -QVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
              GI PD V  V +L  C + GL                L  +  H  C+     R+G 
Sbjct: 223 VGYGILPDTVGVVNILPVCGYLGL---------------GLCGRQVHGFCV-----RSG- 261

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537
                       LV D FV  AL+       K+E A  V E + RF+      +  M   
Sbjct: 262 ------------LVEDVFVGNALVDMYAKCGKMEDANKVFERM-RFKDV--VTWNAMVTG 306

Query: 538 YSSKNRWKEALKLRKKMKERKV---------------KKTPGCSLVEVYGEFYEFRKGDK 582
           YS   R+++AL L  KM+E K+               ++  GC  ++V+ +      G +
Sbjct: 307 YSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMC----GCR 362

Query: 583 SHPKTLEIYKLLD------EIMHQSKNHGY 606
             P  + +  LL        ++H  + H Y
Sbjct: 363 CRPNVVTLMSLLSACASVGALLHGKETHCY 392


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 182/526 (34%), Positives = 284/526 (53%), Gaps = 40/526 (7%)

Query: 83  VYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           V + N +I+  ++N    E I ++  M    + P+ YT P VLKAC  S ++ +G+++H 
Sbjct: 106 VIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHG 165

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
            + K  L S ++V N L+ +Y  CG +     +        ++RD+VSW +L+  Y +  
Sbjct: 166 SATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL----DEMSRRDVVSWNSLVAGYAQNQ 221

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
              +A+    +M    +  D   +  +L A S               T+N   +      
Sbjct: 222 RFDDALEVCREMESVKISHDAGTMASLLPAVSNT------------TTENVMYVK----- 264

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
                DM+ K G              K++VSWN MI          EA++++  M+  G 
Sbjct: 265 -----DMFFKMGK-------------KSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGF 306

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           +PD  ++  VL +C +   L LGK +H Y+++  +  +  + NAL+DMYAKCG +D+A  
Sbjct: 307 EPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARD 366

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF +MK RDV S+TAMI      G+   A+ +FS+M   G+ PD + FV  L+ACSHAGL
Sbjct: 367 VFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGL 426

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           +EEG   F  M+  Y + P+ EH  CMVDL GRAG ++EA   I+ MP+ P+  VWGALL
Sbjct: 427 LEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALL 486

Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
           GAC++H+  ++  +  + L +  PE  G Y+L++NIY+   RW+E   +R  MK + +KK
Sbjct: 487 GACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKK 546

Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
            PG S VEV    + F  GD+SHP++ EIY+ LD ++ + K  GY+
Sbjct: 547 NPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYV 592



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 134/266 (50%), Gaps = 18/266 (6%)

Query: 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD 324
           L+  Y    ++ +ARKVFDE+P +NV+  N MI    + G ++E + +F  M    +KPD
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 325 DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
            +T  CVL +C+  G + +GK +H    K  +++  F+GN LV MY KCG + +A  V  
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            M  RDV S+ +++ G A + +   AL++  EM  V I  D  T   +L A S+     E
Sbjct: 201 EMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTE 258

Query: 445 GCKHFLDMSRVYNLQPQT-EHYGCMVDLFGRAGLIREALDLIKSMP---LVPDAFVWGAL 500
              +  DM   + +  ++   +  M+ ++ +  +  EA++L   M      PDA    ++
Sbjct: 259 NVMYVKDM--FFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSV 316

Query: 501 LGAC----------KIHAKVELAEIV 516
           L AC          KIH  +E  +++
Sbjct: 317 LPACGDTSALSLGKKIHGYIERKKLI 342



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 5/182 (2%)

Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
           K   F L  VL++  ++  L   + VH+ +    +  +  +G  L+  YA    +  A  
Sbjct: 40  KETAFMLGQVLDTYPDLKTL---RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARK 96

Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
           VF  +  R+V     MI     +G   + + +F  M    ++PD  TF  VL ACS +G 
Sbjct: 97  VFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGN 156

Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           +  G K     ++V  L         +V ++G+ G + EA  ++  M    D   W +L+
Sbjct: 157 IVIGKKIHGSATKV-GLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSR-RDVVSWNSLV 214

Query: 502 GA 503
             
Sbjct: 215 AG 216


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 182/479 (37%), Positives = 285/479 (59%), Gaps = 14/479 (2%)

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH---KLFHFRQHPQAQRDLVSWTTL 193
           +Q+HA  ++T+L+ N  VF+  +   A+  + + ++   ++F  R +P     L    T+
Sbjct: 28  RQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRLNPT----LSHCNTM 83

Query: 194 IQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
           I+A+     P E    F  + + ++L  + +     L  C K GDL  G++IH  I  + 
Sbjct: 84  IRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDG 143

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
           F    D  +   L+D+Y  C N   A KVFDE+P ++ VSWN + +      + ++ L +
Sbjct: 144 F--LSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVL 201

Query: 313 FRRMQGL---GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           F +M+      +KPD  T +  L +CAN+G L+ GK VH ++D+N ++    + N LV M
Sbjct: 202 FDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSM 261

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
           Y++CG +D+A+ VF  M+ R+V S+TA+I GLA++G   +A++ F+EM + GI P+E T 
Sbjct: 262 YSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTL 321

Query: 430 VGVLSACSHAGLVEEGCKHFLDM-SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488
            G+LSACSH+GLV EG   F  M S  + ++P   HYGC+VDL GRA L+ +A  LIKSM
Sbjct: 322 TGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSM 381

Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548
            + PD+ +W  LLGAC++H  VEL E V+ +L+  + E  G Y+L+ N YS+  +W++  
Sbjct: 382 EMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVT 441

Query: 549 KLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +LR  MKE+++   PGCS +E+ G  +EF   D SHP+  EIYK+L EI  Q K  GY+
Sbjct: 442 ELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYV 500



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 175/353 (49%), Gaps = 16/353 (4%)

Query: 80  NPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQ 137
           NP +   N +I+  S +  P E   L+R +     LP N  +  + LK C +S  L  G 
Sbjct: 74  NPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGL 133

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           Q+H        LS+  +  TLM LY+ C       K+F   + P  +RD VSW  L   Y
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFD--EIP--KRDTVSWNVLFSCY 189

Query: 198 VKMDYPTEAILSFFDMCQAN----LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
           ++ +  T  +L  FD  + +    ++PDG+  ++ L AC+ LG L  G ++H +I +N  
Sbjct: 190 LR-NKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDEN-- 246

Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
            LS  + + N L+ MY +CG++  A +VF  M  +NVVSW ++I+GL   G  KEA++ F
Sbjct: 247 GLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAF 306

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN--ALVDMYA 371
             M   G+ P++ TL  +L++C++ G +  G      +          + +   +VD+  
Sbjct: 307 NEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLG 366

Query: 372 KCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423
           +   +D+A+ + +SM+ + D   +  ++    +HG       + S + ++  E
Sbjct: 367 RARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAE 419



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 130/279 (46%), Gaps = 12/279 (4%)

Query: 86  YNFIIQC-LSNANPLEAIALYREML--IKGLL-PNTYTLPYVLKACWQSQSLRVGQQVHA 141
           +N +  C L N    + + L+ +M   + G + P+  T    L+AC    +L  G+QVH 
Sbjct: 182 WNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHD 241

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
           +  +  L   + + NTL+ +Y+ CG +   +++F    +   +R++VSWT LI       
Sbjct: 242 FIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVF----YGMRERNVVSWTALISGLAMNG 297

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
           +  EAI +F +M +  + P+   L  +LSACS  G ++ G+     +    F + P++  
Sbjct: 298 FGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHH 357

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL- 319
           +  ++D+  +   +  A  +   M +K +   W +++      G  +    +   +  L 
Sbjct: 358 YGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELK 417

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
             +  D+ L  +LN+ + +G  E    + + + +  I+T
Sbjct: 418 AEEAGDYVL--LLNTYSTVGKWEKVTELRSLMKEKRIHT 454


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 182/552 (32%), Positives = 291/552 (52%), Gaps = 34/552 (6%)

Query: 87  NFIIQCLSNANPLEAIALYREMLIK--GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           + I  C       + +  + EML +     PN + L  VL+ C     +  G+++H + +
Sbjct: 94  SIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWIL 153

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ-------------------- 184
           ++ +  +V + N ++ +YA CG      + F       A                     
Sbjct: 154 RSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQ 213

Query: 185 -------RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
                  RD+ SW T++   ++  + TEA+     M +A +        +V +    L  
Sbjct: 214 LFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSS 273

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD---EMPVKNVVSWN 294
             LG ++H  +      L  D F+  +L+DMY KCG + SA  +FD   +       +W+
Sbjct: 274 RDLGRQLHGRVVVA--VLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWS 331

Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           +M+AG    G+ +EAL+ FRRM   G+    F L  V ++CAN G +E G+ VH +++K 
Sbjct: 332 TMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKL 391

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
               D  + +A+VDMY+K G ++ A  +FRS + ++V  +T M+   A HG+   AL+IF
Sbjct: 392 GHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIF 451

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
           S M    I P+E+T V VLSACSH+GLV +G  +F  M   Y + P TEHY CMVDL+GR
Sbjct: 452 SRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGR 511

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           AGL+ +A + I+   +  +A VW  LL AC++H  +E A++  E LV+ E    G+Y+LM
Sbjct: 512 AGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLM 571

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           +N+Y++ N+W +  KLR  MKER+V+K PG S + +    + F   D SHP++ EIY  L
Sbjct: 572 SNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYL 631

Query: 595 DEIMHQSKNHGY 606
           +++M + K  GY
Sbjct: 632 EKLMERLKEMGY 643



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 179/385 (46%), Gaps = 57/385 (14%)

Query: 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDM---CQANLRPDGMILVIVLSACSKLGDLSLG 241
           R L +WT++I    +     + + +F +M   C A   P+  +L  VL  C+ LGD+  G
Sbjct: 87  RSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATA-PNAFVLAGVLRCCAGLGDVESG 145

Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARK--------------------- 280
            +IH +I  +   + PDV + NA++DMY KCG+   AR+                     
Sbjct: 146 RRIHGWILRS--GVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACL 203

Query: 281 ----------VFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
                     +FDE  +++V SWN++++GL   G   EAL   ++M   G+   ++T   
Sbjct: 204 QDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSM 263

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF---RSMK 387
           V      +   +LG+ +H  +    +  D F+G +L+DMY KCG ++ A  +F       
Sbjct: 264 VFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFT 323

Query: 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447
               ++++ M+ G   +G+  +AL+ F  M + G+   +     V SAC++AG+VE+G  
Sbjct: 324 EDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQG-- 381

Query: 448 HFLDMSRVYNLQPQTEHY------GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
                 +V+    +  H         +VD++ ++G + +A  + +S     +  +W  +L
Sbjct: 382 -----RQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQ-TKNVALWTTML 435

Query: 502 GACKIHAKVELAEIVMENLVRFEPE 526
            +   H +  +A   +E   R + E
Sbjct: 436 CSYASHGQGRMA---LEIFSRMKAE 457



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 132/311 (42%), Gaps = 51/311 (16%)

Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM--QGLGLKPDDFTLVCV 331
            + +A +VFD  P +++ +W S+I+G    G+  + +  F  M  +     P+ F L  V
Sbjct: 73  GLHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGV 132

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC---GRIDQAFG------- 381
           L  CA +G +E G+ +H ++ ++ +  D  + NA++DMYAKC   GR  +AFG       
Sbjct: 133 LRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDA 192

Query: 382 ---------------------VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
                                +F     RDV S+  ++ GL  HG   +AL    +M + 
Sbjct: 193 TSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRA 252

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR------VYNLQPQTEHYGC-MVDLFG 473
           G+     T+  V +    AGL+        D+ R      V  +  +    GC ++D++ 
Sbjct: 253 GVTFSNYTYSMVFAL---AGLLSS-----RDLGRQLHGRVVVAVLEEDAFVGCSLMDMYC 304

Query: 474 RAGLIREALDLIKSMPLVPD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531
           + G +  AL +        +   F W  ++     + + E A      ++R E    G +
Sbjct: 305 KCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLR-EGVPAGQF 363

Query: 532 ILMTNIYSSKN 542
           IL +   +  N
Sbjct: 364 ILTSVASACAN 374


>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial; Flags: Precursor
 gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 601

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 194/589 (32%), Positives = 313/589 (53%), Gaps = 21/589 (3%)

Query: 20  QQLSLLHQS----PRLESSKSVGQLK----QFHAFIIKTGSPQHQTQILYDKIISLSRGN 71
           +   +LH++     R++  +S+ +LK    Q HAF+I TG+  + + I  D I S  R  
Sbjct: 5   KHFCMLHRTLLCPKRIKFLQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIASCGRIG 64

Query: 72  EI---ENLSLQNPQ--VYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLK 125
           EI     +  + PQ  V +YN +I   S   NP E + LY +M+ + + P++ T    +K
Sbjct: 65  EISYARKVFDELPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIK 124

Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
           AC     L  G+ V   ++     ++V+V ++++ LY  CG +     LF       A+R
Sbjct: 125 ACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFG----KMAKR 180

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           D++ WTT++  + +     +A+  + +M       D ++++ +L A   LGD  +G  +H
Sbjct: 181 DVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVH 240

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
            Y+      L  +V +  +L+DMY K G I  A +VF  M  K  VSW S+I+G    G 
Sbjct: 241 GYLYRT--GLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGL 298

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
             +A +    MQ LG +PD  TLV VL +C+ +G L+ G+ VH Y+ K H+  D     A
Sbjct: 299 ANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHV-LDRVTATA 357

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           L+DMY+KCG +  +  +F  +  +D+  +  MI    IHG   + + +F +M++  IEPD
Sbjct: 358 LMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPD 417

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
             TF  +LSA SH+GLVE+G   F  M   Y +QP  +HY C++DL  RAG + EALD+I
Sbjct: 418 HATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEEALDMI 477

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
            S  L     +W ALL  C  H  + + +I    +++  P+  G   L++N +++ N+WK
Sbjct: 478 NSEKLDNALPIWVALLSGCINHRNLSVGDIAANKILQLNPDSIGIQTLVSNFFATANKWK 537

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
           E  K+RK M+   ++K PG S +EV GE   F   D SH +   + ++L
Sbjct: 538 EVAKVRKLMRNGAMEKVPGYSAIEVNGELRTFLMEDLSHHEHYHMLQVL 586


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 185/503 (36%), Positives = 295/503 (58%), Gaps = 28/503 (5%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALL---SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           VL+ C     L+   Q+HA++++T      + ++++  +++L +    +    ++F   +
Sbjct: 31  VLQTCSDMSQLK---QLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIE 87

Query: 180 HPQAQRDLVSWTTLIQAYV-KMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGD 237
           +  +      W TLI+A    +    EA + +  M +     PD      VL AC+ +  
Sbjct: 88  NHSS----FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG 143

Query: 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI 297
            S G ++H  I  + F    DV+++N LI +Y  CG +  ARKVFDEMP +++VSWNSMI
Sbjct: 144 FSEGKQVHCQIVKHGFG--GDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMI 201

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN--- 354
             L   G++  AL +FR MQ    +PD +T+  VL++CA +G L LG W H +L +    
Sbjct: 202 DALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDV 260

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            +  D  + N+L++MY KCG +  A  VF+ M+ RD+ S+ AMI+G A HG+A +A++ F
Sbjct: 261 DVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFF 320

Query: 415 SEM--SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
             M   +  + P+ VTFVG+L AC+H G V +G ++F  M R Y ++P  EHYGC+VDL 
Sbjct: 321 DRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLI 380

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGA-CKIHAKVELAEIVMENLVRFEPEGD--- 528
            RAG I EA+D++ SMP+ PDA +W +LL A CK  A VEL+E +  N++  + + +   
Sbjct: 381 ARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSN 440

Query: 529 ----GAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
               GAY+L++ +Y+S +RW +   +RK M E  ++K PGCS +E+ G  +EF  GD SH
Sbjct: 441 GNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSH 500

Query: 585 PKTLEIYKLLDEIMHQSKNHGYI 607
           P+T +IY+ L  I  + ++ GY+
Sbjct: 501 PQTKQIYQQLKVIDDRLRSIGYL 523



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 241/477 (50%), Gaps = 38/477 (7%)

Query: 21  QLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQH-QTQILYDKIISLSRGNEIENL--- 76
           QL  +H +  L++   + QLKQ HAF ++T  P+   T  LY KI+ LS      N    
Sbjct: 23  QLDRVHATV-LQTCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFR 81

Query: 77  ---SLQNPQVYLYNFIIQCLSN--ANPLEAIALYREMLIKG-LLPNTYTLPYVLKACWQS 130
              S++N   +++N +I+  ++  +   EA  LYR+ML +G   P+ +T P+VLKAC   
Sbjct: 82  VFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYI 141

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190
                G+QVH   +K     +VYV N L+ LY  CG +    K+F        +R LVSW
Sbjct: 142 FGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF----DEMPERSLVSW 197

Query: 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250
            ++I A V+      A+  F +M Q +  PDG  +  VLSAC+ LG LSLG   H ++  
Sbjct: 198 NSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLR 256

Query: 251 N-HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
               +++ DV + N+LI+MY KCG++  A +VF  M  +++ SWN+MI G    G+ +EA
Sbjct: 257 KCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEA 316

Query: 310 LDIFRRM--QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NAL 366
           ++ F RM  +   ++P+  T V +L +C + G++  G+     + +++           +
Sbjct: 317 MNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCI 376

Query: 367 VDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQ--VGIE 423
           VD+ A+ G I +A  +  SM  + D   + +++      G    ++++  E+++  +G +
Sbjct: 377 VDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKG---ASVELSEEIARNIIGTK 433

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
            D  +  G    CS A         ++ +SRVY    +    G +  L    G+ +E
Sbjct: 434 EDNESSNG---NCSGA---------YVLLSRVYASASRWNDVGIVRKLMSEHGIRKE 478


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 185/553 (33%), Positives = 306/553 (55%), Gaps = 13/553 (2%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREML-IKGLLPNTY 118
           +Y ++  +    EI +  L+         I   + N  P+EAI L+ +++  +  + +  
Sbjct: 264 MYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDV 323

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           T    L A  Q Q L +G+Q+HAY +K++ +  V + N ++ +Y+ CG I    K+F   
Sbjct: 324 TFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFS-- 381

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                +RD+V+W T++ A+V+     E ++  F M +     D + L  +LS  S L   
Sbjct: 382 --NMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQ 439

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--KNVVSWNSM 296
            +G + H Y+  +         + + LIDMY K G I +A+++F++     ++  +WN+M
Sbjct: 440 EIGKQAHAYLIRHGIQFEG---MDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAM 496

Query: 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356
           IAG T  G  +E   +FR+M    ++P+  TL  +L +C  +G + LGK +H +  +  +
Sbjct: 497 IAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFL 556

Query: 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416
           N + F+G AL+DMY+K G I  A  VF     ++  +YT MI     HG   +AL +F  
Sbjct: 557 NRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHA 616

Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
           M   GI+PD VTFV +LSACS+AGLV+EG + F  M R Y +QP  EHY C+ D+ GR G
Sbjct: 617 MLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVG 676

Query: 477 LIREALDLIKSMPLVPDAF-VWGALLGACKIHAKVELAEIVMENLVRFEPEGD--GAYIL 533
            + EA + +K +    + F +WG+LLGAC+IH + EL ++V   L+  E      G ++L
Sbjct: 677 RVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVL 736

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
           ++NIY+++  W    ++RK+M+++ + K  GCS VEV G    F   D  HP+  EIY++
Sbjct: 737 LSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQM 796

Query: 594 LDEIMHQSKNHGY 606
           L+++  + K+ GY
Sbjct: 797 LEKLAMEMKDAGY 809



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 212/446 (47%), Gaps = 27/446 (6%)

Query: 77  SLQNPQVYLYN-FIIQCLSNANPLEAIALYREMLIKGLLP----NTYTLPYVLKACWQSQ 131
           S+  P   L+N  II  + N  P++A+  Y  M      P    ++YT    LKAC Q++
Sbjct: 62  SIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRAS---PSPKFDSYTFSSTLKACAQAR 118

Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC-GLIKAVHKLFHFRQ--------HPQ 182
           SL++G+ +H + +++   S+  V+N+L+ +Y+ C   +  +   + F             
Sbjct: 119 SLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTM 178

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            +R++V+W T+I  YVK +   EA   F  M +  +RP  +  V V  A  ++ D     
Sbjct: 179 RKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNAN 238

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
            ++  +     +   D F+ ++ I MY + G +  AR++FD    +N   WN+MI G   
Sbjct: 239 VLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQ 298

Query: 303 RGQFKEALDIF-RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
                EA+D+F + M+      DD T +  L + + + WLELG+ +H Y+ K+       
Sbjct: 299 NNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVV 358

Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
           I NA++ MY++CG I  +F VF +M  RDV ++  M+     +G   + L +   M + G
Sbjct: 359 ILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQG 418

Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC---MVDLFGRAGLI 478
              D VT   +LS  S+    E G       +  Y ++   +  G    ++D++ ++GLI
Sbjct: 419 FMVDSVTLTALLSLASNLRSQEIG-----KQAHAYLIRHGIQFEGMDSYLIDMYAKSGLI 473

Query: 479 REALDLI-KSMPLVPDAFVWGALLGA 503
             A  L  K+     D   W A++  
Sbjct: 474 TTAQQLFEKNSDYDRDEATWNAMIAG 499



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 177/374 (47%), Gaps = 19/374 (5%)

Query: 14  NDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEI 73
           +D+     L+ + Q   LE  +      Q HA+I+K+ S   Q  IL   I+  SR   I
Sbjct: 321 DDVTFLSALTAISQLQWLELGR------QLHAYILKS-STILQVVILNAIIVMYSRCGSI 373

Query: 74  ENL-----SLQNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKAC 127
                   ++    V  +N ++   + N    E + L   M  +G + ++ TL  +L   
Sbjct: 374 GTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLA 433

Query: 128 WQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDL 187
              +S  +G+Q HAY ++  +     + + L+ +YA  GLI    +LF   ++    RD 
Sbjct: 434 SNLRSQEIGKQAHAYLIRHGIQFE-GMDSYLIDMYAKSGLITTAQQLFE--KNSDYDRDE 490

Query: 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRY 247
            +W  +I  Y +     E    F  M + N+RP+ + L  +L AC+ +G + LG +IH +
Sbjct: 491 ATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGF 550

Query: 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307
                 N   +VF+  AL+DMY K G I  A  VF E   KN V++ +MI+     G  +
Sbjct: 551 AIRCFLN--RNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGE 608

Query: 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNAL 366
            AL +F  M G G+KPD  T V +L++C+  G ++ G  +   +++ + I         +
Sbjct: 609 RALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCV 668

Query: 367 VDMYAKCGRIDQAF 380
            DM  + GR+ +A+
Sbjct: 669 ADMLGRVGRVVEAY 682



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 14/177 (7%)

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCV 331
           G+   A  +FD +P    V WN++I G        +AL  + RM+     K D +T    
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSST 110

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC-------------GRIDQ 378
           L +CA    L+LGK +H ++ ++H  +   + N+L++MY+ C                D 
Sbjct: 111 LKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDL 170

Query: 379 AFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435
              VF +M+ R+V ++  MI       +  +A  +F  M ++GI P  V+FV V  A
Sbjct: 171 VRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227


>gi|414873430|tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
          Length = 536

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 194/548 (35%), Positives = 295/548 (53%), Gaps = 65/548 (11%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL-SNVYVFNT 157
           L + AL R  LIK L P      ++  A           ++H    K  LL +  ++   
Sbjct: 6   LSSTALLR--LIKSLSPAAGPRAHLAAA-----------EIHGLLFKEGLLHAGAHLPTA 52

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+  YA  G  +    LF     P     LVS T + +A+       +A+  F DM    
Sbjct: 53  LLSAYAALGRPRHARDLFDEMPDP----GLVSRTAMARAHAASGQAAQALAVFRDMIADG 108

Query: 218 LRPDGMILVIVLSACSKLGDLSL---------GIKIHRYITDNHFNLSPDVFIHNALIDM 268
           + PD + L + L+AC     L           G  +H  I  +   + PDVF+   LI +
Sbjct: 109 VLPDNVALAVALAACHTTASLPAAGMAAARRPGKMVHAIIVTS--GIVPDVFVSTELIRV 166

Query: 269 YLKCGNIPSARKVFDEMPVK-------------------------------NVVSWNSMI 297
           Y + G +  +R++FD MPV+                               +VVSWN+MI
Sbjct: 167 YGEYGELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMI 226

Query: 298 AGLTHRGQFKEALDIFRRM---QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           AG +  G+F EAL++ R+M       + P+  T+  VL +CA  G LE G WVH ++D+N
Sbjct: 227 AGYSLVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRN 286

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVF-RSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
            +N DG +  +L+DMY KCG I++A  VF ++ + RD+YS+T MI GLA+HG+A  AL +
Sbjct: 287 RMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKM 346

Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473
           F  M   GI PD+VT VGVL+AC+H GLV+EG +HF  + + Y + P+ EHYGC++DL G
Sbjct: 347 FGMMQDNGIHPDDVTLVGVLNACAHCGLVDEGLRHFYSLEK-YAITPKIEHYGCVIDLLG 405

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
           R G ++EA ++I++M + P+A +WGA L ACK+H+ VEL EI    L R +P    A ++
Sbjct: 406 RVGRLQEAYNIIRTMRMKPNAVIWGAFLNACKVHSNVELGEIAAAELTRLDPGDPWAKVM 465

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
           ++++Y+    W    + R++M   ++KKTPGCS +E+ GE +EF  G   HP+  EI  +
Sbjct: 466 LSSLYAKLQDWNSLARERREMNNLQIKKTPGCSSIELDGEVHEFVAGGFQHPQHGEICTV 525

Query: 594 LDEIMHQS 601
           L+ +  Q+
Sbjct: 526 LENVEAQT 533



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 201/432 (46%), Gaps = 57/432 (13%)

Query: 4   PLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQIL 60
           PLT++S +    I +    +     PR   + +     + H  + K G   +  H    L
Sbjct: 3   PLTLSSTALLRLIKSLSPAA----GPRAHLAAA-----EIHGLLFKEGLLHAGAHLPTAL 53

Query: 61  YDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA---NPLEAIALYREMLIKGLLPNT 117
                +L R     +L  + P   L +      ++A      +A+A++R+M+  G+LP+ 
Sbjct: 54  LSAYAALGRPRHARDLFDEMPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVLPDN 113

Query: 118 YTLPYVLKACWQSQSL---------RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI 168
             L   L AC  + SL         R G+ VHA  + + ++ +V+V   L+R+Y   G +
Sbjct: 114 VALAVALAACHTTASLPAAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEYGEL 173

Query: 169 KAVHKLF----------------HFRQHPQA-----------QRDLVSWTTLIQAYVKMD 201
               +LF                 + +H              +RD+VSW T+I  Y  + 
Sbjct: 174 ALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVG 233

Query: 202 YPTEAILSFFDMCQAN---LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
              EA+     M   +   + P+G  +  VL+AC+  G L  GI +H ++  N  N   D
Sbjct: 234 RFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMN--DD 291

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
             +  +LIDMY+KCG+I  A +VF++ P  +++ SW +MI GL   G+  +AL +F  MQ
Sbjct: 292 GSLDRSLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQ 351

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             G+ PDD TLV VLN+CA+ G ++ G      L+K  I         ++D+  + GR+ 
Sbjct: 352 DNGIHPDDVTLVGVLNACAHCGLVDEGLRHFYSLEKYAITPKIEHYGCVIDLLGRVGRLQ 411

Query: 378 QAFGVFRSMKCR 389
           +A+ + R+M+ +
Sbjct: 412 EAYNIIRTMRMK 423


>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
 gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
          Length = 537

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 296/549 (53%), Gaps = 66/549 (12%)

Query: 99  LEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL-SNVYVFNT 157
           L + AL R  LIK L P      ++  A            +H    K  LL +  ++   
Sbjct: 6   LSSTALLR--LIKSLSPAAGPRAHLAAAA-----------IHGLLFKEGLLHAGSHLPTA 52

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+  YA  G  +    LF     P     LV+ T + +A+       +A+  F DM    
Sbjct: 53  LLSAYAALGRPRHARDLFDEMPDP----GLVTRTAMARAHAASGQTAQALAVFGDMLADG 108

Query: 218 LRPDGMILVIVLSACSKLGDL--SLGIK--------IHRYITDNHFNLSPDVFIHNALID 267
           + PD + L + L+AC   G    +LG+         +H  I  +   + PDVF+   LI 
Sbjct: 109 VLPDNVALAVALAACHGTGSFPAALGMAAARRPGKMVHALIVTS--GIVPDVFVSTELIR 166

Query: 268 MYLKCGNIPSARKVFDEMPVK-------------------------------NVVSWNSM 296
           +Y + G +  +R++FD MPVK                               +VVSWN++
Sbjct: 167 LYGEYGELLVSRRLFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTI 226

Query: 297 IAGLTHRGQFKEALDIFRRM---QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
           IAG    G+F EAL++FR+M       + P+  T+  VL +CA  G LE G WVH Y+D+
Sbjct: 227 IAGYCLIGRFMEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCLETGIWVHAYIDR 286

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVF-RSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           N +N DG +  +L+DMYAKCG I++A  VF ++   RD+YS+T +I GLA+HGKA  AL 
Sbjct: 287 NRMNDDGSLDRSLIDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMHGKAADALR 346

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           +F  M   GI PD+VT VGVL+AC+H GLV+EG  HF  + + Y + P+ EHYGC++DL 
Sbjct: 347 MFGMMQDNGIRPDDVTLVGVLNACAHGGLVDEGLHHFYSLEK-YAITPKIEHYGCVIDLL 405

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           GR G ++EA  +I++M + P+A +WGA L ACK+H+ VEL EI    L R +P+   A +
Sbjct: 406 GRVGRLQEAYSIIRTMRMKPNAVIWGAFLNACKVHSNVELGEIAAAELTRLDPDDPWAKV 465

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           +++++Y+    W    + R++M   ++KKTPGCS +E+ GE +EF  G   HP+  EI  
Sbjct: 466 MLSSLYAKAQDWSSLARERREMNSLQMKKTPGCSSIELDGEVHEFVAGSFQHPQHGEICT 525

Query: 593 LLDEIMHQS 601
           +L+ +  Q+
Sbjct: 526 VLENVEAQT 534



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 198/430 (46%), Gaps = 52/430 (12%)

Query: 4   PLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDK 63
           PLT++S +    I +    +     PR   + +      F   ++  GS  H    L   
Sbjct: 3   PLTLSSTALLRLIKSLSPAA----GPRAHLAAAAIHGLLFKEGLLHAGS--HLPTALLSA 56

Query: 64  IISLSRGNEIENLSLQNPQVYLYNFIIQCLSNA---NPLEAIALYREMLIKGLLPNTYTL 120
             +L R     +L  + P   L        ++A      +A+A++ +ML  G+LP+   L
Sbjct: 57  YAALGRPRHARDLFDEMPDPGLVTRTAMARAHAASGQTAQALAVFGDMLADGVLPDNVAL 116

Query: 121 PYVLKACWQSQSL----------RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170
              L AC  + S           R G+ VHA  + + ++ +V+V   L+RLY   G +  
Sbjct: 117 AVALAACHGTGSFPAALGMAAARRPGKMVHALIVTSGIVPDVFVSTELIRLYGEYGELLV 176

Query: 171 VHKLF----------------HFRQHPQA-----------QRDLVSWTTLIQAYVKMDYP 203
             +LF                 + +H              +RD+VSW T+I  Y  +   
Sbjct: 177 SRRLFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTIIAGYCLIGRF 236

Query: 204 TEAILSFFDMCQAN---LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
            EA+  F  M   +   + P+G  +  VL+AC+  G L  GI +H YI  N  N   D  
Sbjct: 237 MEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCLETGIWVHAYIDRNRMN--DDGS 294

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
           +  +LIDMY KCG+I  A +VF++ P K ++ SW ++I GL   G+  +AL +F  MQ  
Sbjct: 295 LDRSLIDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMHGKAADALRMFGMMQDN 354

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
           G++PDD TLV VLN+CA+ G ++ G      L+K  I         ++D+  + GR+ +A
Sbjct: 355 GIRPDDVTLVGVLNACAHGGLVDEGLHHFYSLEKYAITPKIEHYGCVIDLLGRVGRLQEA 414

Query: 380 FGVFRSMKCR 389
           + + R+M+ +
Sbjct: 415 YSIIRTMRMK 424


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 179/515 (34%), Positives = 284/515 (55%), Gaps = 5/515 (0%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           L   N   ++AL  EM   G+ PN +T    LKAC     +  G Q+H   +K+      
Sbjct: 81  LQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVS 140

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
            V N  + +Y+ CG I    ++F+        R+LVSW  +I  +       ++++ F  
Sbjct: 141 VVGNATIDMYSKCGRIGMAEQVFN----KMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQR 196

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M      PD       L AC  LG +  G +IH  +    F +S    I +A++D+Y KC
Sbjct: 197 MQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKC 256

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G +  A+KVFD +  KN++SW+++I G    G   EA+D+FR+++      D F L  ++
Sbjct: 257 GYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMM 316

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
              A++  +E GK +H Y+ K     D  + N+++DMY KCG  ++A  +F  M+ R+V 
Sbjct: 317 GVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVV 376

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+T MI G   HG   KA+ +F+ M   GIE DEV ++ +LSACSH+GL+ E  ++F  +
Sbjct: 377 SWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRL 436

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
              + ++P  EHY CMVD+ GRAG ++EA +LI++M L P+  +W  LL AC++H  +E+
Sbjct: 437 CNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEI 496

Query: 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572
              V E L R + +    Y++M+NIY+    WKE  ++RK +K + +KK  G S VE+  
Sbjct: 497 GREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINK 556

Query: 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH-GY 606
           E + F  GD +HP T +I+++L E+  + K   GY
Sbjct: 557 EIHFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGY 591



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/474 (27%), Positives = 220/474 (46%), Gaps = 45/474 (9%)

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           L  +L+ C ++     G QVHA ++      ++ + N L+ +Y  C  +     +F    
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFD--- 63

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
               +R++VSWT L+  Y++      ++    +M  + ++P+       L AC  LG + 
Sbjct: 64  -RMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVE 122

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G++IH     + F       + NA IDMY KCG I  A +VF++MP +N+VSWN+MIAG
Sbjct: 123 NGMQIHGMCVKSGFEWVS--VVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAG 180

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH--IN 357
            TH G  +++L +F+RMQG G  PD+FT    L +C  +G +  G  +H  L      I+
Sbjct: 181 HTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPIS 240

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
               I +A+VD+YAKCG + +A  VF  ++ +++ S++A+I G A  G   +A+D+F ++
Sbjct: 241 IRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQL 300

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEG------------------CKHFLDMSRVYNLQ 459
            +     D      ++   +   LVE+G                      +DM     L 
Sbjct: 301 RESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLT 360

Query: 460 PQTEH------------YGCMVDLFGRAGLIREALDLIKSMPLVP---DAFVWGALLGAC 504
            + E             +  M+  +G+ GL  +A+ L   M L     D   + ALL AC
Sbjct: 361 EEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSAC 420

Query: 505 KIHAKVELAEIVMENLV---RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
                +  ++     L    + +P  +  Y  M +I     + KEA  L + MK
Sbjct: 421 SHSGLIRESQEYFSRLCNNHQMKPNIE-HYACMVDILGRAGQLKEAKNLIENMK 473


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 171/495 (34%), Positives = 283/495 (57%), Gaps = 7/495 (1%)

Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVH 172
           L P       +L  C   + L+ G+ +HA+   +    ++ + N ++ +YA CG ++   
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 173 KLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232
            LF         +D+VSWT LI  Y +    +EA+  F  M     +P+   L  +L A 
Sbjct: 161 DLFD----KMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKAS 216

Query: 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVS 292
                   G ++H +     +++  +V + ++L+DMY +  ++  A+ +F+ +  KNVVS
Sbjct: 217 GTGPSDHHGRQLHAFSLKYGYDM--NVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS 274

Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
           WN++IAG   +G+ +  + +F +M   G +P  FT   V  +CA+ G LE GKWVH ++ 
Sbjct: 275 WNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVI 334

Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
           K+      +IGN L+DMYAK G I  A  VFR +  +D+ S+ ++I G A HG   +AL 
Sbjct: 335 KSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQ 394

Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
           +F +M +  ++P+E+TF+ VL+ACSH+GL++EG +++ ++ + + ++ Q  H+  +VDL 
Sbjct: 395 LFEQMLKAKVQPNEITFLSVLTACSHSGLLDEG-QYYFELMKKHKIEAQVAHHVTVVDLL 453

Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
           GRAG + EA   I+ MP+ P A VWGALLG+C++H  ++L     E +   +P   G ++
Sbjct: 454 GRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHV 513

Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
           L++NIY+S  R  +A K+RK MKE  VKK P CS VE+  E + F   D SHP   EI +
Sbjct: 514 LLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQR 573

Query: 593 LLDEIMHQSKNHGYI 607
           + ++I  + K  GY+
Sbjct: 574 MWEKISGKIKEIGYV 588



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 154/301 (51%), Gaps = 6/301 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+AL+ +ML  G  PN +TL  +LKA     S   G+Q+HA+S+K     NV+V ++L+
Sbjct: 189 EALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLL 248

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA    ++    +F    +  A +++VSW  LI  + +       +  F  M +    
Sbjct: 249 DMYARWAHMREAKVIF----NSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFE 304

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P       V +AC+  G L  G  +H ++  +     P  +I N LIDMY K G+I  A+
Sbjct: 305 PTHFTYSSVFTACASSGSLEQGKWVHAHVIKS--GGQPIAYIGNTLIDMYAKSGSIKDAK 362

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           KVF  +  +++VSWNS+I+G    G   EAL +F +M    ++P++ T + VL +C++ G
Sbjct: 363 KVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSG 422

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L+ G++    + K+ I         +VD+  + GR+++A      M  +   +    ++
Sbjct: 423 LLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 482

Query: 400 G 400
           G
Sbjct: 483 G 483



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 165/310 (53%), Gaps = 10/310 (3%)

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
            +L P+  +   +L+ C+ L  L  G  IH +I  + F    D+ + N +++MY KCG++
Sbjct: 99  GSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFE--DDLVLLNFILNMYAKCGSL 156

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A+ +FD+MP K++VSW  +I+G +  GQ  EAL +F +M  LG +P++FTL  +L + 
Sbjct: 157 EEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKAS 216

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
                   G+ +H +  K   + +  +G++L+DMYA+   + +A  +F S+  ++V S+ 
Sbjct: 217 GTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWN 276

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG---CKHFLDM 452
           A+I G A  G+    + +F +M + G EP   T+  V +AC+ +G +E+G     H +  
Sbjct: 277 ALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKS 336

Query: 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512
                 QP       ++D++ ++G I++A  + + + +  D   W +++     H     
Sbjct: 337 GG----QPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHGLGAE 391

Query: 513 AEIVMENLVR 522
           A  + E +++
Sbjct: 392 ALQLFEQMLK 401


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 169/421 (40%), Positives = 258/421 (61%), Gaps = 33/421 (7%)

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276
           ++ PD      VL AC KL D+  G  IH            ++F+ N ++++Y  CG + 
Sbjct: 5   DVLPDTFTCSFVLKACLKLSDVVNGKTIHGLF--QKLGFGSNLFLQNMILNLYGLCGEMG 62

Query: 277 SARKVFDEMPV-------------------------------KNVVSWNSMIAGLTHRGQ 305
            A  +F++MP                                KNV SW SMI+G    G+
Sbjct: 63  DAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGK 122

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
             EA+D+F +++   ++P++ T+V VL +CA++G L+LG+ VH Y  K+    +  + N 
Sbjct: 123 PNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNT 182

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           L+DMY KCG ++ A  VF  M+ R V S++AMI GLA+HG+A +AL +FSEM ++G++P+
Sbjct: 183 LIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPN 242

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
            VTF+G+L ACSH GL++EG + F  M+  Y + PQ EHYGC+VDLF RAGL+ EA + I
Sbjct: 243 GVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFI 302

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
            SMP+ P+  VWGALLG CK+H  ++LAE  +++L   +P  DG Y++++NIY+   RW+
Sbjct: 303 LSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWE 362

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           +A ++RK MK+R VKKT G S + V G  +EF  GD++HP+  +I K+ D+++ + K  G
Sbjct: 363 DAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRG 422

Query: 606 Y 606
           Y
Sbjct: 423 Y 423



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 181/344 (52%), Gaps = 47/344 (13%)

Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
           M +  +LP+T+T  +VLKAC +   +  G+ +H    K    SN+++ N ++ LY +CG 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 168 IKAVHKLFHFRQHPQ-----------------------------AQRDLVSWTTLIQAYV 198
           +     LF   + PQ                               +++ SWT++I  +V
Sbjct: 61  MGDAMLLFE--KMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFV 118

Query: 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD 258
           +   P EAI  F  +    +RP+ + +V VL+AC+ LGDL LG  +H Y T + F    +
Sbjct: 119 QCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFK--RN 176

Query: 259 VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318
           V + N LIDMY+KCG + +AR+VF EM  + VVSW++MIAGL   GQ +EAL +F  M  
Sbjct: 177 VHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIK 236

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-----NALVDMYAKC 373
           LG+KP+  T + +L++C+++G ++ G+     +  ++    G I        +VD++++ 
Sbjct: 237 LGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADY----GVIPQIEHYGCVVDLFSRA 292

Query: 374 GRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSE 416
           G +++A     SM  + +   + A++ G  +H    K +D+  E
Sbjct: 293 GLLEEAHEFILSMPIKPNGVVWGALLGGCKVH----KNIDLAEE 332



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 111/211 (52%), Gaps = 9/211 (4%)

Query: 90  IQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL 149
           +QC     P EAI L+ ++  + + PN  T+  VL AC     L +G+ VH YS K+   
Sbjct: 118 VQC---GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFK 174

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
            NV+V NTL+ +Y  CG ++   ++F    +   +R +VSW+ +I          EA+  
Sbjct: 175 RNVHVCNTLIDMYVKCGCLENARRVF----YEMEERTVVSWSAMIAGLAMHGQAEEALCL 230

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269
           F +M +  ++P+G+  + +L ACS +G +  G +    +T + + + P +  +  ++D++
Sbjct: 231 FSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTAD-YGVIPQIEHYGCVVDLF 289

Query: 270 LKCGNIPSARKVFDEMPVK-NVVSWNSMIAG 299
            + G +  A +    MP+K N V W +++ G
Sbjct: 290 SRAGLLEEAHEFILSMPIKPNGVVWGALLGG 320


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 167/498 (33%), Positives = 276/498 (55%), Gaps = 6/498 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+  ML  G+ PN+     ++ +      L +G+Q+H+  ++    +N+ +   + 
Sbjct: 175 EAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLIS 234

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y  CG +           +   +++ V+ T L+  Y K     +A+L F  M    + 
Sbjct: 235 NMYVKCGWLDGAE----VATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVE 290

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
            DG +  I+L AC+ LGDL  G +IH Y       L  +V +   L+D Y+KC    +AR
Sbjct: 291 LDGFVFSIILKACAALGDLYTGKQIHSYCI--KLGLESEVSVGTPLVDFYVKCARFEAAR 348

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           + F+ +   N  SW+++IAG    GQF  AL++F+ ++  G+  + F    +  +C+ + 
Sbjct: 349 QAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVS 408

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            L  G  +H    K  +       +A++ MY+KCG++D A   F ++   D  ++TA+I 
Sbjct: 409 DLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIIC 468

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
             A HGKA++AL +F EM   G+ P+ VTF+G+L+ACSH+GLV+EG K    MS  Y + 
Sbjct: 469 AHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVN 528

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519
           P  +HY CM+D++ RAGL++EAL++I+S+P  PD   W +LLG C  H  +E+  I  +N
Sbjct: 529 PTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADN 588

Query: 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRK 579
           + R +P     Y++M N+Y+   +W EA + RK M ER ++K   CS + V G+ + F  
Sbjct: 589 IFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVV 648

Query: 580 GDKSHPKTLEIYKLLDEI 597
           GD+ HP+T +IY  L E+
Sbjct: 649 GDRHHPQTEQIYSKLKEL 666



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 127/513 (24%), Positives = 227/513 (44%), Gaps = 45/513 (8%)

Query: 79  QNPQVYLYNF-IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           QN Q  + N  +I      N  E     R M   G+  N  +  Y+ K C    +L  G+
Sbjct: 53  QNQQGQVENLHLISLAKQGNLREVHEFIRNMDKVGISINPRSYEYLFKMCGTLGALSDGK 112

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
             H    + A  SN ++ N ++++Y  C    +  + F         +DL SW+T+I AY
Sbjct: 113 LFHNRLQRMAN-SNKFIDNCILKMYCDCKSFTSAERFFD----KIVDQDLSSWSTIISAY 167

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            +     EA+  F  M    + P+  I   ++ + +    L LG +IH  +       + 
Sbjct: 168 TEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLI--RIGFAA 225

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
           ++ I   + +MY+KCG +  A    ++M  KN V+   ++ G T   + ++AL +F +M 
Sbjct: 226 NISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMI 285

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             G++ D F    +L +CA +G L  GK +H+Y  K  + ++  +G  LVD Y KC R +
Sbjct: 286 SEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFE 345

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
            A   F S+   + +S++A+I G    G+  +AL++F  +   G+  +   +  +  ACS
Sbjct: 346 AARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACS 405

Query: 438 -----------HAGLVEEGCKHFLD----MSRVYNL---------------QPQTEHYGC 467
                      HA  +++G   +L     M  +Y+                +P T  +  
Sbjct: 406 AVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTA 465

Query: 468 MVDLFGRAGLIREALDLIKSMP---LVPDAFVWGALLGACKIHAKVELAEIVMENLVR-- 522
           ++      G   EAL L K M    + P+A  +  LL AC     V+  + +++++    
Sbjct: 466 IICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEY 525

Query: 523 -FEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554
              P  D  Y  M ++YS     +EAL++ + +
Sbjct: 526 GVNPTID-HYNCMIDVYSRAGLLQEALEVIRSL 557


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 199/592 (33%), Positives = 323/592 (54%), Gaps = 39/592 (6%)

Query: 23  SLLHQSPRLESSKSVGQLKQFHAFIIKTG---SPQHQTQILYD----KIISLSRGNEIEN 75
           SL H  PRL        L++ HA ++K G    P   +++L      + +  SRG     
Sbjct: 29  SLPHGLPRLH------HLQELHAQLLKHGLHLDPVAASKLLSSYALHRRLPASRG---VF 79

Query: 76  LSLQNPQ--VYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQS 132
            S  NP    +L N +++  + NA P EA+A++  M  +    +++T  +++KA   S  
Sbjct: 80  ASFPNPHATTFLPNTLLRAYALNALPREAVAVFSAMPHR----DSFTYSFLIKAL-SSAG 134

Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
           +   + VH++ +K   + + YV N L+  Y+  G      K+F        +RD+VSW +
Sbjct: 135 VAPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFE----EMPRRDVVSWNS 190

Query: 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252
            + A V+      A   F +M    L  D +    +L   +K GD+    K+ + + +  
Sbjct: 191 AMAAMVRQGEVEGARRMFDEM----LEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPER- 245

Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDI 312
                +V   + ++  Y K G++  AR +FD+MP KN+V+W  M++     G  +EA  +
Sbjct: 246 -----NVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKL 300

Query: 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372
           F +M+   ++ D   +V +L +CA  G L LGK +H Y+    +     + NAL+DM+ K
Sbjct: 301 FTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCK 360

Query: 373 CGRIDQAFGVFRS-MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
           CG I++A  VF + +  +D  S+  +I G A+HG   KALD F++M   G  PD VT + 
Sbjct: 361 CGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMIN 420

Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
           VLSAC+H G VEEG ++F +M R Y + PQ EHYGCM+DL GR GLI+EA+DLIKSMP  
Sbjct: 421 VLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWD 480

Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
           P+  +WG+LL AC++H  VE AEI +  L + +P   G Y ++++IY+   +W +  K R
Sbjct: 481 PNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKAR 540

Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603
            +MK    +K+ G S +E+   F+EF  GD+ HP + +I +++D +   +K+
Sbjct: 541 MQMKGTGSQKSSGSSWIELDEAFHEFTVGDRKHPDSDQISEMVDRLSSHAKD 592


>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 538

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 181/511 (35%), Positives = 290/511 (56%), Gaps = 36/511 (7%)

Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
           ++L  C    +L+   Q HA+ +  AL  +  + +  ++  +  G     + LF    HP
Sbjct: 16  WLLNHC---SNLKHLHQTHAFMLCRALDHDNLLLSLFIQSSSSLGFSLYAYSLFTSLTHP 72

Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
               ++  + T+I+A      P+ +I  F  +  A LRPD       L A  +L     G
Sbjct: 73  P---NIFLYNTIIRALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKTG 129

Query: 242 IKIH----RYITDNHFNL--------------------------SPDVFIHNALIDMYLK 271
           ++ H    R+   +H ++                          + +V + NA++  Y K
Sbjct: 130 LQFHSQAIRFGLHSHLHVLVSLIRMYSSSHISDARKLFDGIPLTARNVALWNAMLTSYAK 189

Query: 272 CGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331
             ++P+A+ +FD MP +N++SW ++I+G  H  +  +A+ IFR MQ   + PD+ TL+ V
Sbjct: 190 ICDMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAV 249

Query: 332 LNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
           L++CA +G LELG+W+  Y+D + ++ +  + NAL+DMYAK G I +A  +F SMK + +
Sbjct: 250 LSACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTI 309

Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451
            ++T MI GLA+HG   +AL++FS M +  ++P+E+TF+ VLSACSH GLV+     F +
Sbjct: 310 VTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSACSHVGLVQLARSFFTN 369

Query: 452 MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511
           M   Y +QP+ EHYGCM+DL GRAG ++EA  L++ MP  P+A +WG+LL A   H    
Sbjct: 370 MRSRYTIQPKIEHYGCMIDLLGRAGYLQEAQQLLQQMPFEPNAAIWGSLLAASYTHGDAM 429

Query: 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVY 571
           L E  +++L+  EP   G Y L++NIY+S  RWK +  +RK M++R VKK PG S +EV 
Sbjct: 430 LGERTLKHLIELEPNNSGNYALLSNIYASLGRWKASRIVRKMMRDRGVKKIPGGSFIEVN 489

Query: 572 GEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
               EF  G+ SHP+  EIY+++ +I  QS+
Sbjct: 490 NRVNEFIAGETSHPQFDEIYEVIYKINEQSR 520



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/299 (34%), Positives = 164/299 (54%), Gaps = 41/299 (13%)

Query: 81  PQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
           P ++LYN II+ LS +  P  +I L+  +    L P++Y+ P+ LKA  +  + + G Q 
Sbjct: 73  PNIFLYNTIIRALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKTGLQF 132

Query: 140 HAYSMKTALLSNVYVFNTLMRLYA---------------------------------VCG 166
           H+ +++  L S+++V  +L+R+Y+                                 +C 
Sbjct: 133 HSQAIRFGLHSHLHVLVSLIRMYSSSHISDARKLFDGIPLTARNVALWNAMLTSYAKICD 192

Query: 167 LIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226
           +  A H    F   P  QR+L+SWT LI  Y  ++ P +AI  F  M   N+ PD + L+
Sbjct: 193 MPNAQHL---FDSMP--QRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLL 247

Query: 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
            VLSAC++LG L LG  I  YI D H  L  +V +HNALIDMY K GNI  A  +F+ M 
Sbjct: 248 AVLSACAQLGALELGEWIRNYI-DIH-GLHRNVPLHNALIDMYAKSGNIKRALLIFESMK 305

Query: 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345
            K +V+W +MIAGL   G   +AL++F RM+   +KP++ T + VL++C+++G ++L +
Sbjct: 306 HKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSACSHVGLVQLAR 364



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 130/253 (51%), Gaps = 18/253 (7%)

Query: 98  PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           P +AIA++R M ++ ++P+  TL  VL AC Q  +L +G+ +  Y     L  NV + N 
Sbjct: 224 PHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVPLHNA 283

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +YA  G IK    +F   +H    + +V+WTT+I         T+A+  F  M +  
Sbjct: 284 LIDMYAKSGNIKRALLIFESMKH----KTIVTWTTMIAGLALHGLGTQALEMFSRMERDR 339

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITD--NHFNLSPDVFIHNALIDMYLKCGNI 275
           ++P+ +  + VLSACS +G + L      + T+  + + + P +  +  +ID+  + G +
Sbjct: 340 VKPNEITFIAVLSACSHVGLVQLA---RSFFTNMRSRYTIQPKIEHYGCMIDLLGRAGYL 396

Query: 276 PSARKVFDEMPVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLN 333
             A+++  +MP + N   W S++A     G   +A+   R ++ L  L+P++     +L+
Sbjct: 397 QEAQQLLQQMPFEPNAAIWGSLLAASYTHG---DAMLGERTLKHLIELEPNNSGNYALLS 453

Query: 334 SCANIGWLELGKW 346
           +     +  LG+W
Sbjct: 454 NI----YASLGRW 462


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 193/543 (35%), Positives = 298/543 (54%), Gaps = 22/543 (4%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIK-GLLPNT 117
           LYD +  +     + +        +L N +I+         E+ ALYR++       P++
Sbjct: 29  LYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDS 88

Query: 118 YTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF 177
           +T   + K+C  + ++  GQ++H++ +      ++Y    L+ +YA  G +    KLF  
Sbjct: 89  FTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFD- 147

Query: 178 RQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237
                  R  VSWT LI  YV+      A   F  M    +  D      ++ A  KLGD
Sbjct: 148 ---EMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM----IEKDSAAFNTMIDAYVKLGD 200

Query: 238 LSLGIKIHRYITDNHFNLSPD--VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNS 295
           +    K+        F+  P+  V     +I  Y   GN+ SAR +FD MP KN+ SWN+
Sbjct: 201 MCSARKL--------FDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNA 252

Query: 296 MIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354
           MI+G     Q  EAL +F  MQ    L+PD+ T+V VL + A++G L+LG WVH ++ + 
Sbjct: 253 MISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRK 312

Query: 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIF 414
            ++    +G AL+DMYAKCG I ++ GVF +M  ++  S+ A+I   AI+G+A +AL +F
Sbjct: 313 KLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLF 372

Query: 415 SEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474
            EM+  G  P+E+T +GVLSAC+H+GLVEEG + F  M   + L P+ EHYGCMVDL GR
Sbjct: 373 MEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCMVDLLGR 431

Query: 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534
           AG ++EA  L++SMP   +  +  + L AC     V  AE V++  ++ E   DG YI++
Sbjct: 432 AGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIML 491

Query: 535 TNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLL 594
            N+Y+++ RWKEA +++  M+   VKK  GCS +EV    +EF  GD+ HPK   I+ +L
Sbjct: 492 RNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVHPKWEAIHSVL 551

Query: 595 DEI 597
            ++
Sbjct: 552 GQL 554


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 298/569 (52%), Gaps = 44/569 (7%)

Query: 66  SLSRGNEIEN---LSLQNPQVYLYNFIIQCLSNANPLE---------------------- 100
           SLS G  + N   + ++NP V L N ++Q       LE                      
Sbjct: 96  SLSHGRLLHNRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMIS 155

Query: 101 ----------AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
                     A+ L+  ML  G  P +     +LK+    ++L +G+Q+HA+ ++  L S
Sbjct: 156 AYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCS 215

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           N  +   ++ +Y  CG +    ++F       A +  V+WT L+  Y +     +A+  F
Sbjct: 216 NASIETGIVNMYVKCGWLVGAKRVFD----QMAVKKPVAWTGLMVGYTQAGRARDALKLF 271

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
            D+    +  D  +  +VL AC+ L +L  G +IH  +      L  +V +   L+D Y+
Sbjct: 272 VDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAK--LGLECEVSVGTPLVDFYI 329

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLV 329
           KC +  SA + F E+   N VSW+++I+G     QF+EA+  F+ ++    +  + FT  
Sbjct: 330 KCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYT 389

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
            +  +C+ +    +G  VH    K  +    +  +AL+ MY+KCG +D A  VF SM   
Sbjct: 390 SIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNP 449

Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449
           D+ ++TA I G A +G A +AL +F +M   G++P+ VTF+ VL+ACSHAGLVE+G KH+
Sbjct: 450 DIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQG-KHY 508

Query: 450 LD-MSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
           LD M R YN+ P  +HY CM+D++ R+GL+ EAL  +K+MP  PDA  W   L  C  H 
Sbjct: 509 LDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHK 568

Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
            +EL +I  E L + +PE    Y+L  N+Y+   +W+EA ++ K M ER +KK   CS +
Sbjct: 569 NLELGKIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWI 628

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           +  G+ + F  GDK HP++ EIY+ L E 
Sbjct: 629 QEKGKIHRFIVGDKHHPQSQEIYEKLKEF 657



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 140/583 (24%), Positives = 252/583 (43%), Gaps = 60/583 (10%)

Query: 67  LSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLK 125
           +S  +   ++ + + Q  + N  +  LS    L EA   ++EM   G+  + Y+   + +
Sbjct: 30  VSLKSSTSSVKISHKQGQVENLHLVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFE 89

Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
           AC + +SL  G+ +H          +V + N ++++Y  CG ++   KLF       +  
Sbjct: 90  ACRELRSLSHGRLLHNRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFD----EMSDL 145

Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
           + VS TT+I AY +     +A+  F  M ++  +P   +   +L +      L +G +IH
Sbjct: 146 NAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIH 205

Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
            ++      L  +  I   +++MY+KCG +  A++VFD+M VK  V+W  ++ G T  G+
Sbjct: 206 AHVI--RAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGR 263

Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
            ++AL +F  +   G++ D F    VL +CA++  L  GK +H  + K  +  +  +G  
Sbjct: 264 ARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTP 323

Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEP 424
           LVD Y KC   + A   F+ ++  +  S++A+I G     +  +A+  F  + S+  +  
Sbjct: 324 LVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVL 383

Query: 425 DEVTFVGVLSACS-----------HAGLVEEG-----------------CKHFLDMSRVY 456
           +  T+  +  ACS           HA  ++                   C    D   V+
Sbjct: 384 NSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVF 443

Query: 457 NL--QPQTEHYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVE 511
                P    +   +      G   EAL L + M    + P++  + A+L AC     VE
Sbjct: 444 ESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVE 503

Query: 512 LAEIVMENLVR---FEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568
             +  ++ ++R     P  D  Y  M +IY+      EAL+  K M       +  C   
Sbjct: 504 QGKHYLDTMLRKYNVAPTID-HYDCMIDIYARSGLLDEALRFMKNMPFEPDAMSWKC--- 559

Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ---SKNHGYIL 608
                   F  G  +H K LE+ K+  E + Q       GY+L
Sbjct: 560 --------FLSGCWTH-KNLELGKIAGEELRQLDPEDTAGYVL 593



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 14/188 (7%)

Query: 16  INTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIK---TGSPQHQTQI--LYDKIISLSRG 70
           +N+F   S+      L      GQ+   HA  IK    GS   ++ +  +Y K   L   
Sbjct: 383 LNSFTYTSIFQACSVLADCNIGGQV---HADAIKRSLIGSQYGESALITMYSKCGCLDDA 439

Query: 71  NEIENLSLQNPQVYLYN-FIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQ 129
           +E+   S+ NP +  +  FI       N  EA+ L+ +M+  G+ PN+ T   VL AC  
Sbjct: 440 HEVFE-SMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSH 498

Query: 130 SQSLRVGQQ-VHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
           +  +  G+  +     K  +   +  ++ ++ +YA  GL+    +   F ++   + D +
Sbjct: 499 AGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLLD---EALRFMKNMPFEPDAM 555

Query: 189 SWTTLIQA 196
           SW   +  
Sbjct: 556 SWKCFLSG 563


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 206/595 (34%), Positives = 319/595 (53%), Gaps = 27/595 (4%)

Query: 27  QSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI---LYDKIISLSRGNEIEN-----LSL 78
           +S  L  S  +G  +  HA I++T    H T +   L + ++++    ++ N     LSL
Sbjct: 15  ESAVLSRSSLLG--RAVHAHILRT----HDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSL 68

Query: 79  QNPQ--VYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
            NP+  V   + I  C+ N     A+  +  M  + +LPN +T P V KA         G
Sbjct: 69  TNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTG 128

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +Q+HA ++K   + +V+V  +   +Y+  GL      +F    H    R+L +W   +  
Sbjct: 129 KQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPH----RNLATWNAYMSN 184

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
            V+     +AI +F      +  P+ +     L+AC+ +  L LG ++H +I  + +   
Sbjct: 185 AVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYR-- 242

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPV--KNVVSWNSMIAGLTHRGQFKEALDIFR 314
            DV + N LID Y KCG+I S+  VF  +    +NVVSW S++A L    + + A  +F 
Sbjct: 243 EDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFL 302

Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           + +   ++P DF +  VL++CA +G LELG+ VH    K  +  + F+G+ALVD+Y KCG
Sbjct: 303 QARK-EVEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCG 361

Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ--VGIEPDEVTFVGV 432
            I+ A  VFR M  R++ ++ AMI G A  G    AL +F EM+    GI    VT V V
Sbjct: 362 SIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSV 421

Query: 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492
           LSACS AG VE G + F  M   Y ++P  EHY C+VDL GR+GL+  A + IK MP++P
Sbjct: 422 LSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILP 481

Query: 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552
              VWGALLGACK+H K +L +I  E L   +P+  G +++ +N+ +S  RW+EA  +RK
Sbjct: 482 TISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRK 541

Query: 553 KMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           +M++  +KK  G S V V    + F+  D  H K  EI  +L ++  + K  GY+
Sbjct: 542 EMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYV 596


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 183/502 (36%), Positives = 282/502 (56%), Gaps = 8/502 (1%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ L+R +L  GL  N YTL  VL      + L  G+Q+ A   KT     V V N L+
Sbjct: 55  EAVELFRIVLSLGLDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALV 114

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y  CG I    ++F+        RD VSW +LI A  +  +  +A+  F+ M + +L+
Sbjct: 115 SMYGKCGQICDACRVFY----NMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQ 170

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           P    L  +L A S   +    I+IH  +    F    DV + + LI  Y +C ++  ++
Sbjct: 171 PTIHTLASILEAVSNSNNTKQVIQIHSLVVKCGFMF--DVSMISCLITAYGRCNSMDESK 228

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           +VF E+   N+V  N+MI      G + +AL +++ +  L  K D  T   +L +C+ I 
Sbjct: 229 RVFAEIDKVNLVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAIT 288

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
            ++LG+ VH+ + K   + D F+ ++++D+Y KCG I QA   FRS     + ++ AM++
Sbjct: 289 DMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMM 348

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD-MSRVYNL 458
           G A HG   +  D+F++MSQ GIEPDE+T++GVLS+C H GLV+E  +H+LD M  ++ +
Sbjct: 349 GYAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLSSCCHGGLVKEA-RHYLDSMFELHGI 407

Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
            P  EHY CM+DL GR GL+ +A   I  MP+ PD  +W  LL AC IH  VEL  +   
Sbjct: 408 IPHLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPDVHIWQILLSACNIHGHVELGRVAAR 467

Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            L+   PE + AYIL++N+Y+S   W    +LRK+MKE+ ++K PG S ++V  + + F 
Sbjct: 468 KLLEIHPENESAYILLSNLYASVGMWNAVGRLRKEMKEKNLRKEPGSSWIQVGRKSHTFF 527

Query: 579 KGDKSHPKTLEIYKLLDEIMHQ 600
             D SHP++ EIY  L  +  Q
Sbjct: 528 VNDTSHPQSKEIYAELIRLYKQ 549



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 194/413 (46%), Gaps = 46/413 (11%)

Query: 15  DINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIE 74
           D+N +  +++L     +   K +   KQ  A   KTG         Y +++S+S  N + 
Sbjct: 69  DVNEYTLINVL---SMIGGVKFLNAGKQIQALCHKTG---------YFQVVSVS--NALV 114

Query: 75  NLSLQNPQV-----YLYNFIIQ-----------CLSNANPLEAIALYREMLIKGLLPNTY 118
           ++  +  Q+       YN II+           C  N    +A+ ++ +M    L P  +
Sbjct: 115 SMYGKCGQICDACRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIH 174

Query: 119 TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178
           TL  +L+A   S + +   Q+H+  +K   + +V + + L+  Y  C  +    ++F   
Sbjct: 175 TLASILEAVSNSNNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVF--- 231

Query: 179 QHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL 238
                + +LV   T+I  +V+  Y T+A+  +  +   + + D     I+L ACS + D+
Sbjct: 232 -AEIDKVNLVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDM 290

Query: 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298
            LG  +H  +    F+   D F+ +++ID+Y KCG+I  A K F    + ++ +WN+M+ 
Sbjct: 291 QLGRAVHSLVLKTGFD--QDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMM 348

Query: 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358
           G  H G ++E  D+F +M   G++PD+ T + VL+SC + G   L K    YLD +    
Sbjct: 349 GYAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLSSCCHGG---LVKEARHYLD-SMFEL 404

Query: 359 DGFIGN-----ALVDMYAKCGRIDQAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
            G I +      ++D+  + G ++ A      M  + DV+ +  ++    IHG
Sbjct: 405 HGIIPHLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPDVHIWQILLSACNIHG 457



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 132/287 (45%), Gaps = 36/287 (12%)

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           NA++ MY +CG    A KVFDE+   +VVSW   I G    G   EA+++FR +  LGL 
Sbjct: 13  NAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERI-GTASDGH--EAVELFRIVLSLGLD 69

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            +++TL+ VL+    + +L  GK +     K        + NALV MY KCG+I  A  V
Sbjct: 70  VNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDACRV 129

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F +M  RD  S+ ++I   + +G   +AL++F +M ++ ++P   T   +L A S++   
Sbjct: 130 FYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSNNT 189

Query: 443 EE---------GCKHFLDMSRVYNL---------------------QPQTEHYGCMVDLF 472
           ++          C    D+S +  L                     +    H   M+  F
Sbjct: 190 KQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTF 249

Query: 473 GRAGLIREALDL---IKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            RAG   +AL L   I S+    D+  +  +L AC     ++L   V
Sbjct: 250 VRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAV 296



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 162/354 (45%), Gaps = 15/354 (4%)

Query: 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS 209
           S+++  N +M +YA CG      K+F     P    D+VSWT  I          EA+  
Sbjct: 7   SSMHFSNAVMSMYARCGREVDAIKVFDEIAEP----DVVSWTERIGTASD---GHEAVEL 59

Query: 210 FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI-TDNHFNLSPDVFIHNALIDM 268
           F  +    L  +   L+ VLS    +  L+ G +I        +F +   V + NAL+ M
Sbjct: 60  FRIVLSLGLDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQV---VSVSNALVSM 116

Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
           Y KCG I  A +VF  M +++ VSWNS+I+  +  G   +AL++F +M+ L L+P   TL
Sbjct: 117 YGKCGQICDACRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTL 176

Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
             +L + +N    +    +H+ + K     D  + + L+  Y +C  +D++  VF  +  
Sbjct: 177 ASILEAVSNSNNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDK 236

Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CK 447
            ++     MI      G    AL ++  +  +  + D  TF  +L ACS    ++ G   
Sbjct: 237 VNLVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAV 296

Query: 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           H L +   ++     E    ++D++ + G I +A    +S  +   A  W A++
Sbjct: 297 HSLVLKTGFDQDSFVE--SSVIDIYCKCGSIGQAEKAFRSSSMNSLA-AWNAMM 347


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 169/456 (37%), Positives = 267/456 (58%), Gaps = 6/456 (1%)

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           NV + NT++     C ++     LF   +    +RD ++WTT++    +    +EA+  F
Sbjct: 210 NVVMCNTMITGLLRCKMVAEARALFEAIE----ERDSITWTTMVTGLTQNGLESEALDVF 265

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             M    +  D      +L+AC  L  L  G +IH YIT   +    +VF+ +AL+DMY 
Sbjct: 266 RRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYE--DNVFVGSALVDMYS 323

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KC ++  A  VF  M  KN++SW +MI G    G  +EA+ +F  MQ  G+KPDDFTL  
Sbjct: 324 KCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGS 383

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           V++SCAN+  LE G   H     + +     + NALV +Y KCG I+ A  +F  M   D
Sbjct: 384 VISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHD 443

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
             S+TA+++G A  GKA + +D+F +M   G++PD VTF+GVLSACS +GLV++G  +F 
Sbjct: 444 QVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFH 503

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M + +++ P  +HY CM+DL+ R+G +++A + IK MP  PDAF W  LL AC++   +
Sbjct: 504 SMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDM 563

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           E+ +   ENL++ +P+   +Y+L+ ++++SK  W +  KLR+ M++R+VKK PGCS ++ 
Sbjct: 564 EIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKY 623

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             + + F   D+SHP +  IY+ L  +  +    GY
Sbjct: 624 KNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGY 659



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/384 (32%), Positives = 194/384 (50%), Gaps = 41/384 (10%)

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           N+   N+L+   A  GL++ + +LF        QRD VS+  L+  + +      A  ++
Sbjct: 76  NLVTGNSLLSALARAGLVRDMERLFT----SLPQRDAVSYNALLAGFSRAGAHARAAGAY 131

Query: 211 FDMC--QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
             +   +A +RP  + +  V+   S LGD +LG ++H  I           F  + L+DM
Sbjct: 132 VALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQIL--RLGFGAYAFTGSPLVDM 189

Query: 269 YLKCGNIPSARKVFDEMPVKNVV-------------------------------SWNSMI 297
           Y K G I  AR+VFDEM  KNVV                               +W +M+
Sbjct: 190 YAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMV 249

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
            GLT  G   EALD+FRRM+  G+  D +T   +L +C  +  LE GK +H Y+ +    
Sbjct: 250 TGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYE 309

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
            + F+G+ALVDMY+KC  +  A  VFR M  +++ S+TAMIVG   +G   +A+ +FSEM
Sbjct: 310 DNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEM 369

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
            + GI+PD+ T   V+S+C++   +EEG + F  ++ V  L+P       +V L+G+ G 
Sbjct: 370 QRDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGS 428

Query: 478 IREALDLIKSMPLVPDAFVWGALL 501
           I +A  L   M    D   W AL+
Sbjct: 429 IEDAHRLFDEMSF-HDQVSWTALV 451



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 164/309 (53%), Gaps = 10/309 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ ++R M  +G+  + YT   +L AC    +L  G+Q+HAY  +T    NV+V + L+
Sbjct: 260 EALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALV 319

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ C  ++    +F         ++++SWT +I  Y +     EA+  F +M +  ++
Sbjct: 320 DMYSKCRSVRLAEAVF----RRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIK 375

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD   L  V+S+C+ L  L  G + H     +   L P V + NAL+ +Y KCG+I  A 
Sbjct: 376 PDDFTLGSVISSCANLASLEEGAQFHCLALVS--GLRPYVTVSNALVTLYGKCGSIEDAH 433

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++FDEM   + VSW +++ G    G+ KE +D+F +M   G+KPD  T + VL++C+  G
Sbjct: 434 RLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSG 493

Query: 340 WLELGKWVHTYLDKNH--INTDGFIGNALVDMYAKCGRIDQAFGVFRSM-KCRDVYSYTA 396
            ++ G+     + ++H  +  D      ++D+Y++ G + QA    + M +C D + +  
Sbjct: 494 LVDKGRSYFHSMQQDHDIVPLDDHY-TCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWAT 552

Query: 397 MIVGLAIHG 405
           ++    + G
Sbjct: 553 LLSACRLRG 561



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 146/357 (40%), Gaps = 47/357 (13%)

Query: 41  KQFHAFIIKTGSPQH-----QTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           KQ HA+I +T    +         +Y K  S+     +    +    +     I+    N
Sbjct: 297 KQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQN 356

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
               EA+ ++ EM   G+ P+ +TL  V+ +C    SL  G Q H  ++ + L   V V 
Sbjct: 357 GCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVS 416

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
           N L+ LY  CG I+  H+LF       +  D VSWT L+  Y +     E I  F  M  
Sbjct: 417 NALVTLYGKCGSIEDAHRLF----DEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLS 472

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             ++PDG+  + VLSACS+ G +  G      +  +H ++ P    +  +ID+Y + G +
Sbjct: 473 KGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDH-DIVPLDDHYTCMIDLYSRSGWL 531

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
             A +   +MP                                    PD F    +L++C
Sbjct: 532 KQAEEFIKQMP----------------------------------RCPDAFGWATLLSAC 557

Query: 336 ANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391
              G +E+GKW    L K +  N   ++   L  M+A  G  +    + R M+ R V
Sbjct: 558 RLRGDMEIGKWAAENLLKLDPQNPASYV--LLCSMHASKGEWNDVAKLRRGMRDRQV 612



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 110/270 (40%), Gaps = 65/270 (24%)

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
           L   +H  I     + SP  ++ N L+  Y   G +P AR+VFD MP +N+V+ NS+++ 
Sbjct: 28  LTAAVHALILRTLPHPSP-TYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSA 86

Query: 300 LTHRGQFKEALDIFRRM---------------------------------QGLGLKPDDF 326
           L   G  ++   +F  +                                    G++P   
Sbjct: 87  LARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRI 146

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           T+  V+   + +G   LG+ VH  + +       F G+ LVDMYAK G I  A  VF  M
Sbjct: 147 TMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEM 206

Query: 387 ----------------KC---------------RDVYSYTAMIVGLAIHGKAWKALDIFS 415
                           +C               RD  ++T M+ GL  +G   +ALD+F 
Sbjct: 207 EGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFR 266

Query: 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445
            M   G+  D+ TF  +L+AC     +EEG
Sbjct: 267 RMRAEGVGIDQYTFGSILTACGALAALEEG 296


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 190/527 (36%), Positives = 299/527 (56%), Gaps = 55/527 (10%)

Query: 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL----IKAVHKLFHFRQHPQAQRD 186
           +++R   Q+HA  +K+  + +      ++R  A   L    +   HK+F+  Q PQ  R+
Sbjct: 27  RTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFN--QMPQ--RN 82

Query: 187 LVSWTTLIQAYVKMDYPTE--AILSFFDMCQAN-LRPDGMILVIVLSACSKLGDLSLGIK 243
             SW T+I+ + + D      AI  F +M     + P+      VL AC+K G +  G +
Sbjct: 83  CFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQ 142

Query: 244 IH-----------RYITDNHFNL--------------------------------SPDVF 260
           IH            ++  N   +                                  +V 
Sbjct: 143 IHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVV 202

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GL 319
           + N +ID Y++ G+  +AR +FD+M  ++VVSWN+MI+G +  G FK+A+++FR M+ G 
Sbjct: 203 LWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGE 262

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
            ++P+  TLV VL + + +G LELG+W+H Y + + I  D  +G+AL+DMY+KCG I++A
Sbjct: 263 DIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 322

Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
             VF  +   +V +++AMI G AIHG+A  A+D F +M Q G+ P +V ++ +L+ACSHA
Sbjct: 323 IMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHA 382

Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
           GLVEEG ++F  M  V  L+P+ EHYGCMVDL GR GL+ EA + I +MP+ PD  +W A
Sbjct: 383 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKA 442

Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559
           LLGAC++H  VE+ + V   L+   P   GAY+ ++N+Y+S+  W E  ++R +MKE  +
Sbjct: 443 LLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDI 502

Query: 560 KKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
           +K PGCS +++ G  +EF   D SHP+  EI  +L EI  + +  GY
Sbjct: 503 RKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGY 549



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 189/373 (50%), Gaps = 60/373 (16%)

Query: 29  PRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL--------QN 80
           P++ + +++  L Q HA  IK+G  Q +  +   +I+     +++ +  L        Q 
Sbjct: 21  PQINTCRTIRDLSQIHAVFIKSG--QIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQM 78

Query: 81  PQ--VYLYNFIIQCLSNAN---PLEAIALYREMLIKGLL-PNTYTLPYVLKACWQSQSLR 134
           PQ   + +N II+  S ++    L AI L+ EM+    + PN +T P VLKAC ++  ++
Sbjct: 79  PQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQ 138

Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHF------------RQHPQ 182
            G+Q+H  ++K     + +V + L+R+Y +CGL+K    LF+             R+   
Sbjct: 139 QGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRD 198

Query: 183 A-----------------------------QRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
                                         QR +VSW T+I  Y +  +  +A+  F +M
Sbjct: 199 GEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREM 258

Query: 214 CQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
            +  ++RP+ + LV VL A S+LG L LG  +H Y  D+   +  D  + +ALIDMY KC
Sbjct: 259 KKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRI--DDVLGSALIDMYSKC 316

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
           G I  A  VF+ +P +NV++W++MI G    GQ  +A+D F +M+  G++P D   + +L
Sbjct: 317 GIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLL 376

Query: 333 NSCANIGWLELGK 345
            +C++ G +E G+
Sbjct: 377 TACSHAGLVEEGR 389



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 105/205 (51%), Gaps = 13/205 (6%)

Query: 100 EAIALYREMLIKG--LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157
           +A+ ++REM  KG  + PN  TL  VL A  +  SL +G+ +H Y+  + +  +  + + 
Sbjct: 250 DAVEVFREMK-KGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSA 308

Query: 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN 217
           L+ +Y+ CG+I+    +  F + P  + ++++W+ +I  +       +AI  F  M QA 
Sbjct: 309 LIDMYSKCGIIEKA--IMVFERLP--RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAG 364

Query: 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITD--NHFNLSPDVFIHNALIDMYLKCGNI 275
           +RP  +  + +L+ACS  G +  G    RY +   +   L P +  +  ++D+  + G +
Sbjct: 365 VRPSDVAYINLLTACSHAGLVEEG---RRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLL 421

Query: 276 PSARKVFDEMPVK-NVVSWNSMIAG 299
             A +    MP+K + V W +++  
Sbjct: 422 DEAEEFILNMPIKPDDVIWKALLGA 446


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 169/414 (40%), Positives = 253/414 (61%), Gaps = 10/414 (2%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           +RD+VSW ++I+  +K+   +EA   F +M       D +    +L    K G+++    
Sbjct: 9   ERDVVSWNSMIRGLLKVGELSEACKLFDEMPM----KDAVSWNTILDGYVKAGEMNKAFG 64

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303
           +   + +       +V   + ++  Y K G++  AR +FD MPVKN+VSW  +++G   +
Sbjct: 65  LFESMPER------NVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVK 118

Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG 363
           G  K+A+  F +M+  GLKPDD T++ +L SCA  G L LGK VHT +++        + 
Sbjct: 119 GLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVS 178

Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423
           NALVDMYAKCG++D+A  VF  M  +D+ S+  M+ GLA+HG   KAL +FS M Q G  
Sbjct: 179 NALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFR 238

Query: 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483
           PD+VT V VL AC HAG V+EG ++F +M R Y + P  EHYGCMVDL GR G ++EA  
Sbjct: 239 PDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYR 298

Query: 484 LIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543
           L++SMP+ P+  +WG LLGAC++H  V LAE V++ L + EP   G Y L++NI++S   
Sbjct: 299 LVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGD 358

Query: 544 WKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
           W     +R +MK   ++K  G S +EV  E +EF   DKSHPK+ +IY++++ +
Sbjct: 359 WSSVANVRLQMKNFGIQKPSGASSIEVDDEVHEFTVFDKSHPKSDKIYQMINRL 412



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 9/222 (4%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           +AI  + +M   GL P+  T+  +L +C +S  L +G++VH    +     +V V N L+
Sbjct: 123 DAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALV 182

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +YA CG +     +F+      +++DLVSW  ++Q      +  +A+  F  M Q   R
Sbjct: 183 DMYAKCGQVDRALSVFN----GMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFR 238

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD + LV VL AC   G +  GI+    + +  + + P +  +  ++D+  + G +  A 
Sbjct: 239 PDKVTLVAVLCACVHAGFVDEGIRYFNNM-ERDYGIVPHIEHYGCMVDLLGRGGRLKEAY 297

Query: 280 KVFDEMPVK-NVVSWNSMIAGLTHR---GQFKEALDIFRRMQ 317
           ++   MPV+ NVV W +++         G  +E LD   +++
Sbjct: 298 RLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLE 339



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 10/234 (4%)

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++F  M  ++VVSWNSMI GL   G+  EA  +F  M       D  +   +L+     G
Sbjct: 2   RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMP----MKDAVSWNTILDGYVKAG 57

Query: 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399
             E+ K    +      N   +  + +V  Y K G ++ A  +F  M  +++ S+T ++ 
Sbjct: 58  --EMNKAFGLFESMPERNVVSW--STMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVS 113

Query: 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
           G A+ G A  A+  F +M + G++PD+ T + +L++C+ +GL+  G +    + R+   +
Sbjct: 114 GYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERI-RYK 172

Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
                   +VD++ + G +  AL +   M    D   W  +L    +H   E A
Sbjct: 173 CSVNVSNALVDMYAKCGQVDRALSVFNGMS-KKDLVSWNCMLQGLAMHGHGEKA 225


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 181/514 (35%), Positives = 276/514 (53%), Gaps = 13/514 (2%)

Query: 94  SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG---QQVHAYSMKTALLS 150
           SN     A+ L+R ML  G+ PN +TL  VL AC +  +   G     +HA +++  +  
Sbjct: 46  SNGCHSYALDLFRRMLAAGVGPNEFTLSSVLTAC-RGGAADGGCEPSSLHAVAVRRGVDH 104

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
             YV N L+  YA C     V +         + R   SWT+++  Y +       +  F
Sbjct: 105 MPYVVNALIEAYASCEEGVGVEESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLF 164

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             M Q  +        I L AC+ + +L +G ++H       FN   ++ + N+LIDMY 
Sbjct: 165 QTMIQDGIELSPFTCSIALHACASIANLCVGQQLHVLCLRKAFN--ANLTVANSLIDMYC 222

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
            C N+  AR++FDE+P +N+V+WN+MIA  +       AL + R M    L+P+ FTL  
Sbjct: 223 SCANLLDARRLFDEIPERNLVTWNTMIAWYSQCNHLM-ALQLLREMN---LQPNCFTLTS 278

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           + ++CA +  L  G+ VH    + +   D  + NALVDMY+KCG I  A  +F  M  +D
Sbjct: 279 ITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKD 338

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
             S+T+MI G  ++G A +++ +F+ M   G+ PD V F+G++ AC+H GLV+EG   F 
Sbjct: 339 KLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFLGLICACNHGGLVDEGWNFFR 398

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M+  YNLQP  E YGC+ +L  RAG +REA DLI  MP  PD  VWGALLGACK+H  V
Sbjct: 399 SMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLIHRMPFAPDETVWGALLGACKMHKNV 458

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           EL  +    ++   P+    Y+L+ NIY++ N+W E    R+ ++    +K  G S ++V
Sbjct: 459 ELGRLAARKIIEINPDRAKTYVLLANIYAAGNKWGEYADTRRLLRGIGSRKEAGTSWIDV 518

Query: 571 YGEFYEFRKGDKSHPKTL---EIYKLLDEIMHQS 601
             + Y F   D S P+     E+ ++L   MH++
Sbjct: 519 TDKIYSFTTADSSSPQVSLADEVLQILARHMHEA 552



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 191/448 (42%), Gaps = 69/448 (15%)

Query: 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216
           TL++     G ++  H    F + P   RD+V+WT ++  Y      + A+  F  M  A
Sbjct: 8   TLIKSLCAGGALR--HARAVFDEMPD--RDVVAWTAMLSGYASNGCHSYALDLFRRMLAA 63

Query: 217 NLRPDGMILVIVLSACSKLGDLSLGIK---IHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
            + P+   L  VL+AC + G    G +   +H        +  P  ++ NALI+ Y  C 
Sbjct: 64  GVGPNEFTLSSVLTAC-RGGAADGGCEPSSLHAVAVRRGVDHMP--YVVNALIEAYASCE 120

Query: 274 ---NIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV 329
               +  +RK+FD +   +   SW SM+AG +  GQ +  L +F+ M   G++   FT  
Sbjct: 121 EGVGVEESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCS 180

Query: 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389
             L++CA+I  L +G+ +H    +   N +  + N+L+DMY  C  +  A  +F  +  R
Sbjct: 181 IALHACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPER 240

Query: 390 DVYSYTAMIVGLAIHGKAW-------KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           ++ ++  MI        AW        AL +  EM+   ++P+  T   + SAC+    +
Sbjct: 241 NLVTWNTMI--------AWYSQCNHLMALQLLREMN---LQPNCFTLTSITSACAGLASL 289

Query: 443 EEG------------------CKHFLDM----------SRVYNLQPQTE--HYGCMVDLF 472
             G                  C   +DM           +++N+    +   +  M+  +
Sbjct: 290 RFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGY 349

Query: 473 GRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLV---RFEPE 526
           G  G   E++ L  SM    + PD  V+  L+ AC     V+       ++      +P 
Sbjct: 350 GMNGYANESIQLFTSMIHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPN 409

Query: 527 GDGAYILMTNIYSSKNRWKEALKLRKKM 554
            +  Y  +TN+ +   R +EA  L  +M
Sbjct: 410 KE-IYGCVTNLLARAGRLREAFDLIHRM 436


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 168/422 (39%), Positives = 257/422 (60%), Gaps = 10/422 (2%)

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRP-DGMILVIVLSACSKLGDLSLGIKIHRYI 248
           W T+I+ Y + D P EAI+ +  M    + P +      +L++C++L  L  G ++H +I
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308
             + F    D+F+ NALI +Y   GN+  AR +FDE  V+++VS+N+MI G     Q + 
Sbjct: 62  IKHGF--ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPES 119

Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV-HTYLDKNHINTDGFIGNALV 367
           AL +F  MQ      D+ TLV VL++CA +G  +LGK + H Y++    N +  +  A++
Sbjct: 120 ALCLFGEMQ----NSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVM 175

Query: 368 DMYAKCGRIDQAFGVFRSM--KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
           DMYAKCG ID A  +FR +    +  + + +MI GLA HG    A+ +F E+   G++PD
Sbjct: 176 DMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPD 235

Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
           EVTFVGVL AC H+GL+EEG K F  M   Y ++PQ EHYGCMVDL GR G + EA DL+
Sbjct: 236 EVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLV 295

Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545
           + MP   ++ +W ALL AC+ H  V++ EI  + L+  E +    Y+L++NI +  N+W+
Sbjct: 296 QKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWE 355

Query: 546 EALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
           EA ++RK M++  ++K PG S +E+ G  + F   DKSHP+  EI  +L ++  + K+ G
Sbjct: 356 EARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAG 415

Query: 606 YI 607
           Y+
Sbjct: 416 YV 417



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 176/312 (56%), Gaps = 24/312 (7%)

Query: 85  LYNFIIQCLSNA-NPLEAIALYREMLIKGLLP-NTYTLPYVLKACWQSQSLRVGQQVHAY 142
           ++N +I+  S + NP EAI LY  M+ KG+ P N +T P++L +C +  SL  G +VH++
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60

Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
            +K    S+++V N L+ LY+V G +     LF         RDLVS+ T+I+ Y +++ 
Sbjct: 61  IIKHGFESDLFVRNALIHLYSVFGNLNLARTLF----DESLVRDLVSYNTMIKGYAEVNQ 116

Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI-HRYITDNHFNLSPDVFI 261
           P  A+  F +M  +    D + LV VLSAC++LG   LG ++ H+YI +  FN   +  +
Sbjct: 117 PESALCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFN--QNTIL 170

Query: 262 HNALIDMYLKCGNIPSARKVFDEMP--VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
             A++DMY KCG+I SA ++F  +   +K    +NSMIAGL   G  + A+ +FR +   
Sbjct: 171 TAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELIST 230

Query: 320 GLKPDDFTLVCVLNSCANIGWLELGK-----WVHTYLDKNHINTDGFIGNALVDMYAKCG 374
           GLKPD+ T V VL +C + G +E GK       + Y  K  +   G     +VD+  + G
Sbjct: 231 GLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYG----CMVDLLGRYG 286

Query: 375 RIDQAFGVFRSM 386
            +++A+ + + M
Sbjct: 287 CLEEAYDLVQKM 298


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 173/508 (34%), Positives = 289/508 (56%), Gaps = 10/508 (1%)

Query: 100  EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN-TL 158
            +A+  + EML  G+ PN  TL  +L +C  +  +R G+ VH ++++  L  N    +  L
Sbjct: 844  KALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPAL 903

Query: 159  MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
            + LYA CG +     + H        R++V W + I  Y       EA+  F  M    +
Sbjct: 904  VELYAECGRLGDCETILHV----VGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRI 959

Query: 219  RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
            +PD   L  ++SAC   G + LG +IH ++     +   D F+ N++IDMY K G +  A
Sbjct: 960  KPDSFTLASIISACENTGLVRLGKQIHGHVIRTDVS---DEFVQNSVIDMYSKSGFVNLA 1016

Query: 279  RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
              VFD++  +++V+WNSM+ G +  G   EA+++F  M    L+ +  T + V+ +C++I
Sbjct: 1017 CTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSI 1076

Query: 339  GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
            G LE G+WVH  L    I  D F   AL+DMYAKCG ++ A  VFR+M  R + S+++MI
Sbjct: 1077 GSLEKGRWVHHKLIVCGIK-DLFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMI 1135

Query: 399  VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
                +HG+   A+  F++M + G +P+EV F+ VLSAC H+G VEEG K++ ++ +++ +
Sbjct: 1136 NAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEG-KYYFNLMKLFGV 1194

Query: 459  QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
             P +EH+ C +DL  R+G ++EA   IK MP + DA VWG+L+  C+IH K+++ + +  
Sbjct: 1195 SPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKN 1254

Query: 519  NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
            ++     +  G Y L++NIY+ +  W+E  ++R  MK   +KK PG S +E+  + + F 
Sbjct: 1255 DISDIVTDDTGYYTLLSNIYAEEGEWEEFRRMRSAMKSLNLKKVPGYSAIEIDKKVFRFG 1314

Query: 579  KGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             G+++  +T EIY  L  + + +    Y
Sbjct: 1315 AGEETCFQTEEIYMFLGNLQNLTLEEDY 1342



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 139/512 (27%), Positives = 268/512 (52%), Gaps = 30/512 (5%)

Query: 11   SRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQH---QTQIL--YDKII 65
            S    I+ F   S+L          SVG  ++ H  IIK+G       +T +L  Y +  
Sbjct: 651  SEKTQISKFVFPSVLRACAGSREHLSVG--RKVHGRIIKSGVDDDAVIETSLLCMYGQTG 708

Query: 66   SLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLK 125
            +LS   ++ +       V     +  CL N   L+A+ +++ M+  G+ P+  T+  V++
Sbjct: 709  NLSDAEKVFDGMPVRDLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVE 768

Query: 126  ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
             C +   LR+ + VH    +     +  + N+L+ +Y+ CG + +  K+F       A++
Sbjct: 769  GCAELGCLRIARSVHGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIF----EKIAKK 824

Query: 186  DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
            + VSWT +I +Y + ++  +A+ SF +M ++ + P+ + L  +LS+C   G +  G  +H
Sbjct: 825  NAVSWTAMISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVH 884

Query: 246  -----RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
                 R +  N+ +LSP      AL+++Y +CG +     +   +  +N+V WNS I+  
Sbjct: 885  GFAIRRELDPNYESLSP------ALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLY 938

Query: 301  THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360
             HRG   EAL +FR+M    +KPD FTL  ++++C N G + LGK +H ++ +  + +D 
Sbjct: 939  AHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDV-SDE 997

Query: 361  FIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            F+ N+++DMY+K G ++ A  VF  +K R + ++ +M+ G + +G + +A+++F  M   
Sbjct: 998  FVQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHS 1057

Query: 421  GIEPDEVTFVGVLSACSHAGLVEEG--CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478
             +E ++VTF+ V+ ACS  G +E+G    H L +  + +L   T     ++D++ + G +
Sbjct: 1058 CLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGIKDLFTDT----ALIDMYAKCGDL 1113

Query: 479  REALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
              A  + ++M        W +++ A  +H ++
Sbjct: 1114 NTAETVFRAMS-NRSIVSWSSMINAYGMHGRI 1144



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 133/492 (27%), Positives = 245/492 (49%), Gaps = 25/492 (5%)

Query: 22   LSLLHQSPRLESSKSVGQLKQFHAFIIKTG----SPQHQTQILYD-KIISLSRGNEIENL 76
            L +    P   S  S+  + Q HA ++ TG     P   T+++     +     + +   
Sbjct: 557  LKMTQYMPLFRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFE 616

Query: 77   SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQS-LR 134
            +   P  ++Y  +I+C    + L+A I LY  ++ +    + +  P VL+AC  S+  L 
Sbjct: 617  AFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSEKTQISKFVFPSVLRACAGSREHLS 676

Query: 135  VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
            VG++VH   +K+ +  +  +  +L+ +Y   G +    K+F         RDLV+W+TL+
Sbjct: 677  VGRKVHGRIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVF----DGMPVRDLVAWSTLV 732

Query: 195  QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
             + ++     +A+  F  M    + PD + ++ V+  C++LG L +   +H  IT   F+
Sbjct: 733  SSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFD 792

Query: 255  LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE-ALDIF 313
               D  + N+L+ MY KCG++ S+ K+F+++  KN VSW +MI+   +RG+F E AL  F
Sbjct: 793  F--DETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSY-NRGEFSEKALRSF 849

Query: 314  RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD-GFIGNALVDMYAK 372
              M   G++P+  TL  +L+SC   G +  GK VH +  +  ++ +   +  ALV++YA+
Sbjct: 850  SEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVELYAE 909

Query: 373  CGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432
            CGR+     +   +  R++  + + I   A  G   +AL +F +M    I+PD  T   +
Sbjct: 910  CGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASI 969

Query: 433  LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA---LDLIKSMP 489
            +SAC + GLV  G +    + R        ++   ++D++ ++G +  A    D IK   
Sbjct: 970  ISACENTGLVRLGKQIHGHVIRTDVSDEFVQN--SVIDMYSKSGFVNLACTVFDQIKHRS 1027

Query: 490  LVPDAFVWGALL 501
            +V     W ++L
Sbjct: 1028 IV----TWNSML 1035


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 185/522 (35%), Positives = 286/522 (54%), Gaps = 8/522 (1%)

Query: 89   IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
            I+  +   + +EA  L+R M + G+LP+  +L  +L AC   + L  G+QVH  S+KT  
Sbjct: 501  IVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQ 560

Query: 149  LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
             + +Y  ++L+ +YA CG I + HK+         +R +VS   LI  Y +++   +A+ 
Sbjct: 561  ETKLYSGSSLIDMYAKCGAIDSAHKILA----CMPERSVVSMNALIAGYAQINLE-QAVN 615

Query: 209  SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
             F DM    +    +    +L AC +   L+LG +IH  I      L  D F+  +L+ M
Sbjct: 616  LFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLD-DEFLGVSLLGM 674

Query: 269  YLKCGNIPSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
            Y+       A  +F E    K+ V W +MI+GL+       AL +++ M+   + PD  T
Sbjct: 675  YMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQAT 734

Query: 328  LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM- 386
             V  L +CA +  ++ G   H+ +     ++D    +ALVDMYAKCG +  +  VF+ M 
Sbjct: 735  FVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMS 794

Query: 387  KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
            + +DV S+ +MIVG A +G A  AL +F EM Q  + PD+VTF+GVL+ACSH+G V EG 
Sbjct: 795  RKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGR 854

Query: 447  KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
              F  M  +Y +QP+ +H  CMVDL GR G ++EA + I  +   PDA VW  +LGAC+I
Sbjct: 855  LIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATMLGACRI 914

Query: 507  HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
            H      +   E L+  EP+    Y+L++NIY++   W E   LR++M+E+ VKK PGCS
Sbjct: 915  HGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRREMREKGVKKLPGCS 974

Query: 567  LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
             + V  E   F  GDKSH    EI  +L ++    + + Y++
Sbjct: 975  WIVVGQETNMFVAGDKSHHSASEIDAILKDLTPLMRENDYVV 1016



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 193/360 (53%), Gaps = 8/360 (2%)

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           + N  V  +N +I   +     +EAI  ++ M   G+     TL  VL A     +L  G
Sbjct: 287 MPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFG 346

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
             VHA ++K  L SNVYV ++L+ +YA CG ++A  K+F        ++++V W  ++  
Sbjct: 347 LLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLN----EQNVVLWNAMLGG 402

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           YV+  Y  E +  FF+M      PD      +LSAC+ L  L LG ++H  I  N F  +
Sbjct: 403 YVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKF--A 460

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
            ++F+ NAL+DMY K G +  AR+ F+ +  ++ VSWN +I G        EA  +FRRM
Sbjct: 461 SNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRM 520

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
             LG+ PD+ +L  +L++CA++  LE GK VH    K    T  + G++L+DMYAKCG I
Sbjct: 521 NLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAI 580

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           D A  +   M  R V S  A+I G A      +A+++F +M   GI   E+TF  +L AC
Sbjct: 581 DSAHKILACMPERSVVSMNALIAGYA-QINLEQAVNLFRDMLVEGINSTEITFASLLDAC 639



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 180/335 (53%), Gaps = 7/335 (2%)

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
           F T++  Y   G +     LF   + P   R++V+W  +I  + K  Y  EAI  F +M 
Sbjct: 264 FVTVINAYVDLGRLDNASDLF--SRMPN--RNVVAWNLMISGHAKGGYGVEAIEFFQNMR 319

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
           +A ++     L  VLSA + L  L  G+ +H         L  +V++ ++L+ MY KCG 
Sbjct: 320 KAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQ--GLHSNVYVGSSLVSMYAKCGK 377

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           + +A+KVFD +  +NVV WN+M+ G    G   E +++F  M+  G  PDDFT   +L++
Sbjct: 378 MEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSA 437

Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
           CA + +L+LG  +H+ + KN   ++ F+GNALVDMYAK G ++ A   F  ++ RD  S+
Sbjct: 438 CACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSW 497

Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
             +IVG        +A  +F  M+ +GI PDEV+   +LSAC+    +E+G K    +S 
Sbjct: 498 NVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQG-KQVHCLSV 556

Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
               + +      ++D++ + G I  A  ++  MP
Sbjct: 557 KTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMP 591



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 195/406 (48%), Gaps = 45/406 (11%)

Query: 78  LQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           L++  +  +N I+   S    P   +  +  +   G+ PN +T   VL +C + + ++ G
Sbjct: 120 LEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCG 179

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +QVH   +K    S  Y    L+ +YA C  +     +F        + D VSWT++I  
Sbjct: 180 RQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFD----GAVELDKVSWTSMIGG 235

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           Y+K+  P EA+  F +M +    PD +  V V++A                         
Sbjct: 236 YIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINA------------------------- 270

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
                       Y+  G + +A  +F  MP +NVV+WN MI+G    G   EA++ F+ M
Sbjct: 271 ------------YVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNM 318

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
           +  G+K    TL  VL++ A++  L+ G  VH    K  ++++ ++G++LV MYAKCG++
Sbjct: 319 RKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKM 378

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           + A  VF ++  ++V  + AM+ G   +G A + +++F  M   G  PD+ T+  +LSAC
Sbjct: 379 EAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSAC 438

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREA 481
           +    ++ G  H L    + N        G  +VD++ ++G + +A
Sbjct: 439 ACLKYLDLG--HQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDA 482



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 183/389 (47%), Gaps = 29/389 (7%)

Query: 33  SSKSVGQLKQFHAFIIKTGSPQHQTQI--------LYDKIISLSRGNEIENLSLQNPQVY 84
           S + + Q KQ H   +KTG    +T++        +Y K  ++   ++I    +    V 
Sbjct: 541 SVRGLEQGKQVHCLSVKTG---QETKLYSGSSLIDMYAKCGAIDSAHKIL-ACMPERSVV 596

Query: 85  LYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
             N +I   +  N  +A+ L+R+ML++G+     T   +L AC + Q L +G+Q+H+  +
Sbjct: 597 SMNALIAGYAQINLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLIL 656

Query: 145 KTAL-LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
           K  L L + ++  +L+ +Y           LF    +P++    V WT +I    + D  
Sbjct: 657 KMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSA---VVWTAMISGLSQNDCS 713

Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
             A+  + +M   N+ PD    V  L AC+ +  +  G + H  I   H     D    +
Sbjct: 714 VVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIF--HTGFDSDELTSS 771

Query: 264 ALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
           AL+DMY KCG++ S+ +VF EM   K+V+SWNSMI G    G  ++AL +F  M+   + 
Sbjct: 772 ALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVT 831

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA-----LVDMYAKCGRID 377
           PDD T + VL +C++ G +  G+ +   +    +N  G    A     +VD+  + G + 
Sbjct: 832 PDDVTFLGVLTACSHSGRVSEGRLIFDMM----VNLYGMQPRADHCACMVDLLGRWGSLK 887

Query: 378 QAFGVFRSMKCR-DVYSYTAMIVGLAIHG 405
           +A      +    D   +  M+    IHG
Sbjct: 888 EAEEFINKLNFEPDAKVWATMLGACRIHG 916



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/457 (23%), Positives = 187/457 (40%), Gaps = 92/457 (20%)

Query: 81  PQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
           P++Y +  +  CL  +  ++  +L+ E            +P  L     SQ     + +H
Sbjct: 41  PRIYTH-ILQNCLQKSKQVKTHSLFDE------------IPQRL-----SQFSTTNKIIH 82

Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
           A S+K    S   + N ++ LYA C  +    + F   +     +D+++W +++  + K 
Sbjct: 83  AQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLE----DKDILAWNSILSMHSKQ 138

Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
            +P   +  F  +  + + P+     IVLS+C++L  +  G ++H  +    F      +
Sbjct: 139 GFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFE--SISY 196

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
              ALI MY KC  +  AR +FD     + VSW SMI G    G  +EA+ +F+ M+ +G
Sbjct: 197 CEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVG 256

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
            +PD    V V+N+                                   Y   GR+D A 
Sbjct: 257 QEPDQVAFVTVINA-----------------------------------YVDLGRLDNAS 281

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS--- 437
            +F  M  R+V ++  MI G A  G   +A++ F  M + GI+    T   VLSA +   
Sbjct: 282 DLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLA 341

Query: 438 --------HAGLVEEG-----------------CKHFLDMSRVYNL--QPQTEHYGCMVD 470
                   HA  +++G                 C       +V++   +     +  M+ 
Sbjct: 342 ALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLG 401

Query: 471 LFGRAGLIREALDL---IKSMPLVPDAFVWGALLGAC 504
            + + G   E ++L   +KS    PD F + ++L AC
Sbjct: 402 GYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSAC 438


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 208/614 (33%), Positives = 317/614 (51%), Gaps = 31/614 (5%)

Query: 7   VASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQ-----HQTQILY 61
           V SG R N+      ++    S  LE+ + V      HA +++TG  +     +    +Y
Sbjct: 194 VWSGVRPNEFGFSCVVNACTGSRDLEAGRKV------HAMVVRTGYDKDVFTANALVDMY 247

Query: 62  DKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLP 121
            K+  +     +     +   V    FI  C+ + +   A+ L  +M   GL+PN +TL 
Sbjct: 248 SKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLS 307

Query: 122 YVLKACWQSQSLRVG--QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
            +LKAC  + +      +Q+H + +K    S+ Y+   L+ +YA  GL+    K+F +  
Sbjct: 308 SILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEW-- 365

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
               ++DL+ W  LI          E++  F  M +     +   L  VL + + L  +S
Sbjct: 366 --IPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAIS 423

Query: 240 LGIKIHR------YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
              ++H       +++D+H        + N LID Y KC  +  A KVF+E    N++++
Sbjct: 424 DTTQVHALAEKIGFLSDSH--------VVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAF 475

Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
            SMI  L+     ++A+ +F  M   GL+PD F L  +LN+CA++   E GK VH +L K
Sbjct: 476 TSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 535

Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
               TD F GNALV  YAKCG I+ A   F  +  + V S++AMI GLA HG   +ALD+
Sbjct: 536 RKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDV 595

Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473
           F  M    I P+ +T   VL AC+HAGLV+E   +F  M  ++ +    EHY CM+DL G
Sbjct: 596 FRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLG 655

Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
           RAG + +A++L+ SMP   +A VWGALL A ++H   EL ++  E L   EPE  G ++L
Sbjct: 656 RAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVL 715

Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
           + N Y+S   W E  K+RK MK+ KVKK P  S VE+    + F  GDKSHP+  +IY  
Sbjct: 716 LANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAK 775

Query: 594 LDEIMHQSKNHGYI 607
           L+E+       GY+
Sbjct: 776 LEELGDLMSKAGYV 789



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 151/531 (28%), Positives = 252/531 (47%), Gaps = 46/531 (8%)

Query: 30  RLESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIENLSLQNPQVYLY 86
           R  +++S+      HA ++K+G   + ++     Y K         + + +     V   
Sbjct: 13  RYAATQSLFLGAHIHAHLLKSGLLHAFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWS 72

Query: 87  NFIIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKT 146
           + +    +NA P EA+A +R M  +G+  N + LP VLK C     L  G QVHA ++ T
Sbjct: 73  SLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLK-CAPDAGL--GVQVHAVAVST 129

Query: 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
            L  +++V N L+ +Y   G +    ++F         R+ VSW  ++ A+VK D  ++A
Sbjct: 130 GLSGDIFVANALVAMYGGFGFVDEARRVF---DEAARDRNAVSWNGMMSAFVKNDRCSDA 186

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           +  F +M  + +RP+      V++AC+   DL  G K+H  +    ++   DVF  NAL+
Sbjct: 187 VELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYD--KDVFTANALV 244

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           DMY K G+I  A  VF ++P  +VVSWN+ I+G    G  + AL++  +M+  GL P+ F
Sbjct: 245 DMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVF 304

Query: 327 TLVCVLN--SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384
           TL  +L   + A  G   LG+ +H ++ K   ++D +IG ALVDMYAK G +D A  VF 
Sbjct: 305 TLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFE 364

Query: 385 SMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444
            +  +D+  + A+I G +  G   ++L +F  M + G + +  T   VL + +    + +
Sbjct: 365 WIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISD 424

Query: 445 GCK--------HFLDMSRVYNLQPQT---------------EH-------YGCMVDLFGR 474
             +         FL  S V N    +               EH       +  M+    +
Sbjct: 425 TTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQ 484

Query: 475 AGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522
                +A+ L   M    L PD FV  +LL AC   +  E  + V  +L++
Sbjct: 485 CDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 535



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 139/527 (26%), Positives = 244/527 (46%), Gaps = 32/527 (6%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQVYL 85
           L+ +   G   Q HA  + TG        +    +Y     +     + + + ++     
Sbjct: 110 LKCAPDAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVS 169

Query: 86  YNFIIQC-LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144
           +N ++   + N    +A+ L+ EM+  G+ PN +    V+ AC  S+ L  G++VHA  +
Sbjct: 170 WNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVV 229

Query: 145 KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204
           +T    +V+  N L+ +Y+  G I     +F        + D+VSW   I   V   +  
Sbjct: 230 RTGYDKDVFTANALVDMYSKLGDIHMAALVF----GKVPKTDVVSWNAFISGCVLHGHDQ 285

Query: 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI--KIHRYITDNHFNLSPDVFIH 262
            A+     M  + L P+   L  +L AC+  G  +  +  +IH ++     +   D +I 
Sbjct: 286 HALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACAD--SDDYIG 343

Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
            AL+DMY K G +  ARKVF+ +P K+++ WN++I+G +H G   E+L +F RM+  G  
Sbjct: 344 VALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSD 403

Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382
            +  TL  VL S A++  +     VH   +K    +D  + N L+D Y KC  +  A  V
Sbjct: 404 INRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKV 463

Query: 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442
           F      ++ ++T+MI  L+       A+ +F EM + G+EPD      +L+AC+     
Sbjct: 464 FEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAY 523

Query: 443 EEGCK-HFLDMSRVYNLQPQTEHYG--CMVDLFGRAGLIREALDLIKSMPLVPDAFV--W 497
           E+G + H   + R +     T+ +    +V  + + G I +A DL  +   +PD  V  W
Sbjct: 524 EQGKQVHAHLIKRKF----MTDVFAGNALVYTYAKCGSIEDA-DL--AFSGLPDKGVVSW 576

Query: 498 GALLGACKIHAKVELAEIVMENLV--RFEPEGDGAYILMTNIYSSKN 542
            A++G    H   + A  V   +V  R  P     +I +T++  + N
Sbjct: 577 SAMIGGLAQHGHGKRALDVFRRMVDERIAPN----HITLTSVLCACN 619


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 183/487 (37%), Positives = 281/487 (57%), Gaps = 12/487 (2%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC--GLIKAVHKLFHFRQH 180
           +LK C   +S+   +QVHA+ +K  L  + +  + L+   A+   G ++    +F   + 
Sbjct: 37  LLKRC---KSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEE 93

Query: 181 PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240
           P +      + T+I+  V      EA+L + +M +  + PD      VL ACS L  L  
Sbjct: 94  PGS----FEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKE 149

Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL 300
           G++IH ++      L  DVF+ N LI MY KCG I  A  VF++M  K+V SW+S+I   
Sbjct: 150 GVQIHAHVFKA--GLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAH 207

Query: 301 THRGQFKEALDIFRRMQGLGL-KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
                + E L +   M G G  + ++  LV  L++C ++G   LG+ +H  L +N    +
Sbjct: 208 ASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELN 267

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
             +  +L+DMY KCG +++   VF++M  ++ YSYT MI GLAIHG+  +A+ +FS+M +
Sbjct: 268 VVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLE 327

Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
            G+ PD+V +VGVLSACSHAGLV EG + F  M   + ++P  +HYGCMVDL GRAG+++
Sbjct: 328 EGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLK 387

Query: 480 EALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539
           EA DLIKSMP+ P+  VW +LL ACK+H  +E+ EI  EN+ R      G Y+++ N+Y+
Sbjct: 388 EAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYA 447

Query: 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMH 599
              +W    ++R +M E+ + +TPG SLVE     Y+F   DKS P    IY ++ ++  
Sbjct: 448 RAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEW 507

Query: 600 QSKNHGY 606
           Q K  GY
Sbjct: 508 QLKFEGY 514



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 194/373 (52%), Gaps = 31/373 (8%)

Query: 31  LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII--------SLSRGNEIENL-----S 77
           L+  KS+ + KQ HA I+K G       + YD           +LSR   +E        
Sbjct: 38  LKRCKSMEEFKQVHAHILKLG-------LFYDSFCGSNLVASCALSRWGSMEYACSIFSQ 90

Query: 78  LQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           ++ P  + YN +I+   N+  LE A+ LY EML +G+ P+ +T P+VLKAC    +L+ G
Sbjct: 91  IEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEG 150

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
            Q+HA+  K  L  +V+V N L+ +Y  CG I+  H    F Q    ++ + SW+++I A
Sbjct: 151 VQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIE--HAGVVFEQ--MDEKSVASWSSIIGA 206

Query: 197 YVKMDYPTEAILSFFDMC-QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           +  ++   E ++   DM  +   R +  ILV  LSAC+ LG  +LG  IH  +  N   L
Sbjct: 207 HASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISEL 266

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315
             +V +  +LIDMY+KCG++     VF  M  KN  S+  MIAGL   G+ +EA+ +F  
Sbjct: 267 --NVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSD 324

Query: 316 MQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI--NTDGFIGNALVDMYAKC 373
           M   GL PDD   V VL++C++ G +  G      +   H+   T    G  +VD+  + 
Sbjct: 325 MLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYG-CMVDLMGRA 383

Query: 374 GRIDQAFGVFRSM 386
           G + +A+ + +SM
Sbjct: 384 GMLKEAYDLIKSM 396


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 173/485 (35%), Positives = 281/485 (57%), Gaps = 7/485 (1%)

Query: 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ 182
           +LK C   + L  G+ VH + +++    ++ + NTL+ +YA CG ++   K+F       
Sbjct: 57  LLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFD----KM 112

Query: 183 AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242
            +RD V+WTTLI  Y + D P +A++ F  M +    P+   L  V+ A +       G 
Sbjct: 113 PERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGH 172

Query: 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302
           ++H +     F+   +V + +AL+D+Y + G +  A+ VFD +  +N VSWN++IAG   
Sbjct: 173 QLHGFCVKCGFD--SNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 230

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
           R   ++AL++F+ M   G +P  F+   +  +C++ G+LE GKWVH Y+ K+      F 
Sbjct: 231 RCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 290

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
           GN L+DMYAK G I  A  +F  +  RDV S+ +++   A HG   +A+  F EM + GI
Sbjct: 291 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGI 350

Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
            P+E++F+ VL+ACSH+GL++EG  H+ ++ +   +  +  HY  +VDL GRAG +  AL
Sbjct: 351 RPNEISFLSVLTACSHSGLLDEGW-HYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRAL 409

Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
             I+ MP+ P A +W ALL AC++H   EL     E++   +P+  G ++++ NIY+S  
Sbjct: 410 RFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGG 469

Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602
           RW +A ++RKKMKE  VKK P CS VE+    + F   D+ HP+  EI +  +E++ + K
Sbjct: 470 RWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIK 529

Query: 603 NHGYI 607
             GY+
Sbjct: 530 ELGYV 534



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 156/327 (47%), Gaps = 6/327 (1%)

Query: 60  LYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGLLPNTYT 119
           +Y K  SL    ++ +   +   V     I     +  P +A+ L+ +ML  G  PN +T
Sbjct: 95  MYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFT 154

Query: 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQ 179
           L  V+KA    +    G Q+H + +K    SNV+V + L+ LY   GL+     +F   +
Sbjct: 155 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 214

Query: 180 HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLS 239
                R+ VSW  LI  + +     +A+  F  M +   RP       +  ACS  G L 
Sbjct: 215 ----SRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLE 270

Query: 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAG 299
            G  +H Y+  +   L    F  N L+DMY K G+I  ARK+FD +  ++VVSWNS++  
Sbjct: 271 QGKWVHAYMIKSGEKLV--AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 328

Query: 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359
               G   EA+  F  M+  G++P++ + + VL +C++ G L+ G   +  + K+ I  +
Sbjct: 329 YAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLE 388

Query: 360 GFIGNALVDMYAKCGRIDQAFGVFRSM 386
            +    +VD+  + G +++A      M
Sbjct: 389 AWHYVTIVDLLGRAGDLNRALRFIEEM 415


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 180/522 (34%), Positives = 290/522 (55%), Gaps = 16/522 (3%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           + N  EA+  +R ML+ G+      +  +L AC     ++ G+ +H+    +   S + V
Sbjct: 138 HGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLV 197

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            N +M +Y  CG ++   K+F      +A RD+VSW  ++  YV  D   +AI  +  M 
Sbjct: 198 ANAVMTMYGRCGAVEEARKVFD--AMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRM- 254

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              LRPD +  V +LSACS   D+ LG  +H+ I ++   L  +V + NAL+ MY KCG+
Sbjct: 255 --QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVND--ELEKNVIVGNALVSMYAKCGS 310

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-------LKPDDFT 327
              AR VFD+M  ++++SW ++I+    R    EA  +F++M  L        +KPD   
Sbjct: 311 HTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALA 370

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
            V +LN+CA++  LE GK V        +++D  +G A+V++Y KCG I++A  +F ++ 
Sbjct: 371 FVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVC 430

Query: 388 CR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
            R DV  + AMI   A  G++ +AL +F  M   G+ PD  +FV +L ACSH GL ++G 
Sbjct: 431 SRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGK 490

Query: 447 KHFLDMSRVY-NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505
            +F  M+  Y N+    +H+GC+ DL GR G ++EA + ++ +P+ PDA  W +LL AC+
Sbjct: 491 SYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACR 550

Query: 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGC 565
            H  ++ A+ V   L+R EP     Y+ ++NIY+   +W    K+RK M E+ VKK  G 
Sbjct: 551 NHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGV 610

Query: 566 SLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           S +E+    ++F  GD +HP+  EI + L ++  Q K  GY+
Sbjct: 611 STIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYV 652



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 229/461 (49%), Gaps = 22/461 (4%)

Query: 77  SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV 135
           +L+   +Y +  ++   + +    E +     M   G+ P+  T    L +C   +SLR 
Sbjct: 17  ALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRD 76

Query: 136 GQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195
           G ++H   + + L  +  V N L+ +Y  CG +    ++F      +  R+++SW+ +  
Sbjct: 77  GIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVF---AKMERTRNVISWSIMAG 133

Query: 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL 255
           A+       EA+  F  M    ++     +V +LSACS    +  G  IH  I  + F  
Sbjct: 134 AHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFE- 192

Query: 256 SPDVFIHNALIDMYLKCGNIPSARKVFDEM--PVKNVVSWNSMIAGLTHRGQFKEALDIF 313
             ++ + NA++ MY +CG +  ARKVFD M   +++VVSWN M++   H  + K+A+ ++
Sbjct: 193 -SELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLY 251

Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373
           +RMQ   L+PD  T V +L++C++   + LG+ +H  +  + +  +  +GNALV MYAKC
Sbjct: 252 QRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKC 308

Query: 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-------SQVGIEPDE 426
           G   +A  VF  M+ R + S+T +I          +A  +F +M       S   ++PD 
Sbjct: 309 GSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDA 368

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           + FV +L+AC+    +E+G K   + +    L         +V+L+G+ G I EA  +  
Sbjct: 369 LAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFD 427

Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527
           ++   PD  +W A++    ++A+   +   ++   R E EG
Sbjct: 428 AVCSRPDVQLWNAMIA---VYAQFGQSHEALKLFWRMEMEG 465



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 190/411 (46%), Gaps = 49/411 (11%)

Query: 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243
           QR+L SWT L+ A+       E + +   M Q  +RPD +  +  L +C     L  GI+
Sbjct: 20  QRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIR 79

Query: 244 IHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMIAGLTH 302
           IH+ + D+   + P V   NAL++MY KCG++  A++VF +M   +NV+SW+ M      
Sbjct: 80  IHQMVVDSRLEIDPKV--SNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHAL 137

Query: 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFI 362
            G   EAL  FR M  LG+K     +V +L++C++   ++ G+ +H+ +  +   ++  +
Sbjct: 138 HGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLV 197

Query: 363 GNALVDMYAKCGRIDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420
            NA++ MY +CG +++A  VF +M    RDV S+  M+     + +   A+ ++  M   
Sbjct: 198 ANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQ-- 255

Query: 421 GIEPDEVTFVGVLSACSHAGLVEEG----------------------------CKHFLDM 452
            + PD+VT+V +LSACS A  V  G                            C    + 
Sbjct: 256 -LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEA 314

Query: 453 SRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSM----------PLVPDAFVWGAL 500
             V++   Q     +  ++  + R  L+ EA  L + M           + PDA  +  +
Sbjct: 315 RAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTI 374

Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAY-ILMTNIYSSKNRWKEALKL 550
           L AC   + +E  ++V E         D A    + N+Y      +EA ++
Sbjct: 375 LNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRI 425



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 148/330 (44%), Gaps = 42/330 (12%)

Query: 268 MYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT 327
           MY  C +   A+  FD +  +N+ SW  ++A     GQ KE L    RM+  G++PD  T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM- 386
            +  L SC +   L  G  +H  +  + +  D  + NAL++MY KCG +  A  VF  M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
           + R+V S++ M    A+HG  W+AL  F  M  +GI+  +   V +LSACS   LV++G 
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG- 179

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE-------------------------- 480
           +       +   + +      ++ ++GR G + E                          
Sbjct: 180 RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYV 239

Query: 481 -------ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
                  A+ L + M L PD   + +LL AC     V L  ++ + +V  E E +   ++
Sbjct: 240 HNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKN---VI 296

Query: 534 MTN----IYSSKNRWKEALKLRKKMKERKV 559
           + N    +Y+      EA  +  KM++R +
Sbjct: 297 VGNALVSMYAKCGSHTEARAVFDKMEQRSI 326


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 267/456 (58%), Gaps = 6/456 (1%)

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
           NV ++NT++     C +++   +LF         RD ++WTT++  + +    +EA+  F
Sbjct: 205 NVVMYNTMITGLLRCKMVEEARRLFEV----MTDRDSITWTTMVTGFTQNGLESEALEIF 260

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             M    +  D      +L+AC  L  L  G +IH YI    ++   +VF+ +AL+DMY 
Sbjct: 261 RRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYD--DNVFVGSALVDMYS 318

Query: 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330
           KC +I  A  VF  M  KN++SW ++I G    G  +EA+ +F  MQ  G+ PDD+TL  
Sbjct: 319 KCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGS 378

Query: 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390
           V++SCAN+  LE G   H     + +     + NALV +Y KCG I+ A  +F  M   D
Sbjct: 379 VISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHD 438

Query: 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
             S+TA++ G A  G+A + +D+F +M   G++PD VTF+GVLSACS AG VE+G  +F 
Sbjct: 439 QVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFH 498

Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKV 510
            M + + + P  +HY CM+DL+ R+G ++EA + IK MP+ PDA  WG LL AC++   +
Sbjct: 499 SMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDM 558

Query: 511 ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEV 570
           E+ +   ENL+  +P+   +Y+L+ +++++K +W E  +LR+ M++R+VKK PGCS ++ 
Sbjct: 559 EIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKY 618

Query: 571 YGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
             + + F   D+SHP +  IY+ L+ +  +    GY
Sbjct: 619 KNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGY 654



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 144/512 (28%), Positives = 237/512 (46%), Gaps = 86/512 (16%)

Query: 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL-SNVYVFNTLMRLYAVCGLIKAVHK 173
           P TY L ++L A  ++     G+   A  +  A+   N++ +N L+   A   L+  +  
Sbjct: 39  PPTYLLNHLLTAYGKA-----GRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEA 93

Query: 174 LFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQAN--LRPDGMILVIVLSA 231
           LF        QRD+VS+  +I  +       +A+  +  + QA+  +RP  + +  ++ A
Sbjct: 94  LFA----SMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMA 149

Query: 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291
            S LGD +LG + H  I         + F+ + L+DMY K   +  A++ FDE+  KNVV
Sbjct: 150 ASALGDRALGKQFHCQIL--RLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVV 207

Query: 292 -------------------------------SWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
                                          +W +M+ G T  G   EAL+IFRRM+  G
Sbjct: 208 MYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQG 267

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           +  D +T   +L +C  +  LE GK +H Y+ +   + + F+G+ALVDMY+KC  I  A 
Sbjct: 268 IAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAE 327

Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
            VFR M C+++ S+TA+IVG   +G + +A+ +FSEM + GI+PD+ T   V+S+C++  
Sbjct: 328 TVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLA 387

Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI---------------------- 478
            +EEG + F  ++ V  L         +V L+G+ G I                      
Sbjct: 388 SLEEGAQ-FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALV 446

Query: 479 ---------REALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526
                    +E +DL + M    + PD   +  +L AC     VE       ++ +    
Sbjct: 447 SGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQK--DH 504

Query: 527 G----DGAYILMTNIYSSKNRWKEALKLRKKM 554
           G    D  Y  M ++YS   + KEA +  K+M
Sbjct: 505 GIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQM 536



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 157/289 (54%), Gaps = 9/289 (3%)

Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
           EA+ ++R M  +G+  + YT   +L AC    +L  G+Q+HAY ++T    NV+V + L+
Sbjct: 255 EALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALV 314

Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
            +Y+ C  IK    +F         ++++SWT LI  Y +     EA+  F +M +  + 
Sbjct: 315 DMYSKCRSIKLAETVF----RRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD   L  V+S+C+ L  L  G + H     +   L   + + NAL+ +Y KCG+I  A 
Sbjct: 371 PDDYTLGSVISSCANLASLEEGAQFHCLALVS--GLMHYITVSNALVTLYGKCGSIEDAH 428

Query: 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
           ++FDEM   + VSW ++++G    G+ KE +D+F +M   G+KPD  T + VL++C+  G
Sbjct: 429 RLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAG 488

Query: 340 WLELGKWVHTYLDKNH--INTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
           ++E G+     + K+H  +  D      ++D+Y++ G++ +A    + M
Sbjct: 489 FVEKGRSYFHSMQKDHGIVPIDDHY-TCMIDLYSRSGKLKEAEEFIKQM 536



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 17/278 (6%)

Query: 39  QLKQFHAFIIKTGSPQHQTQI--------LYDKIISLSRGNEIENLSLQNPQVYLYNFII 90
           Q KQ HA+II+T   ++   +        +Y K  S+     +         +     I+
Sbjct: 290 QGKQIHAYIIRT---RYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIV 346

Query: 91  QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150
               N    EA+ ++ EM   G+ P+ YTL  V+ +C    SL  G Q H  ++ + L+ 
Sbjct: 347 GYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMH 406

Query: 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF 210
            + V N L+ LY  CG I+  H+LF       +  D VSWT L+  Y +     E I  F
Sbjct: 407 YITVSNALVTLYGKCGSIEDAHRLF----DEMSFHDQVSWTALVSGYAQFGRAKETIDLF 462

Query: 211 FDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270
             M    ++PDG+  + VLSACS+ G +  G      +  +H  + P    +  +ID+Y 
Sbjct: 463 EKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDH-GIVPIDDHYTCMIDLYS 521

Query: 271 KCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFK 307
           + G +  A +   +MP+  + + W ++++    RG  +
Sbjct: 522 RSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDME 559


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 181/489 (37%), Positives = 290/489 (59%), Gaps = 25/489 (5%)

Query: 137 QQVHAYSMKTALL---SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL 193
           +Q+HA++++T      + ++++  +++L +    +    ++F   ++  +      W TL
Sbjct: 122 KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS----FMWNTL 177

Query: 194 IQAYV-KMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
           I+A    +    EA + +  M +     PD      VL AC+ +   S G ++H  I  +
Sbjct: 178 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 237

Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
            F    DV+++N LI +Y  CG +  ARKVFDEMP +++VSWNSMI  L   G++  AL 
Sbjct: 238 GFG--GDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQ 295

Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN---HINTDGFIGNALVD 368
           +FR MQ    +PD +T+  VL++CA +G L LG W H +L +     +  D  + N+L++
Sbjct: 296 LFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIE 354

Query: 369 MYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM--SQVGIEPDE 426
           MY KCG +  A  VF+ M+ RD+ S+ AMI+G A HG+A +A++ F  M   +  + P+ 
Sbjct: 355 MYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNS 414

Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
           VTFVG+L AC+H G V +G ++F  M R Y ++P  EHYGC+VDL  RAG I EA+D++ 
Sbjct: 415 VTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVM 474

Query: 487 SMPLVPDAFVWGALLGA-CKIHAKVELAEIVMENLVRFEPEGD-------GAYILMTNIY 538
           SMP+ PDA +W +LL A CK  A VEL+E +  N++  + + +       GAY+L++ +Y
Sbjct: 475 SMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVY 534

Query: 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598
           +S +RW +   +RK M E  ++K PGCS +E+ G  +EF  GD SHP+T +IY+ L  I 
Sbjct: 535 ASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVID 594

Query: 599 HQSKNHGYI 607
            + ++ GY+
Sbjct: 595 DRLRSIGYL 603



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 235/466 (50%), Gaps = 37/466 (7%)

Query: 32  ESSKSVGQLKQFHAFIIKTGSPQH-QTQILYDKIISLSRGNEIENL------SLQNPQVY 84
           E+   + QLKQ HAF ++T  P+   T  LY KI+ LS      N       S++N   +
Sbjct: 113 ETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSF 172

Query: 85  LYNFIIQCLSN--ANPLEAIALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
           ++N +I+  ++  +   EA  LYR+ML +G   P+ +T P+VLKAC        G+QVH 
Sbjct: 173 MWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHC 232

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
             +K     +VYV N L+ LY  CG +    K+F        +R LVSW ++I A V+  
Sbjct: 233 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF----DEMPERSLVSWNSMIDALVRFG 288

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN-HFNLSPDVF 260
               A+  F +M Q +  PDG  +  VLSAC+ LG LSLG   H ++      +++ DV 
Sbjct: 289 EYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 347

Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM--QG 318
           + N+LI+MY KCG++  A +VF  M  +++ SWN+MI G    G+ +EA++ F RM  + 
Sbjct: 348 VKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKR 407

Query: 319 LGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRID 377
             ++P+  T V +L +C + G++  G+     + +++           +VD+ A+ G I 
Sbjct: 408 ENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYIT 467

Query: 378 QAFGVFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQ--VGIEPDEVTFVGVLS 434
           +A  +  SM  + D   + +++      G    ++++  E+++  +G + D  +  G   
Sbjct: 468 EAIDMVMSMPMKPDAVIWRSLLDACCKKG---ASVELSEEIARNIIGTKEDNESSNG--- 521

Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480
            CS A         ++ +SRVY    +    G +  L    G+ +E
Sbjct: 522 NCSGA---------YVLLSRVYASASRWNDVGIVRKLMSEHGIRKE 558


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 172/391 (43%), Positives = 239/391 (61%), Gaps = 5/391 (1%)

Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
           PD      +L AC++L  L  G  +H     N   L   VF+ N+L+ +Y  CG   SA 
Sbjct: 120 PDTHTYPPLLQACARLLALRYGEGLHAEACKN--GLVSLVFVKNSLVHLYGACGLFESAH 177

Query: 280 KVFDEMPV--KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
           +VFDE+P   +N+VSWNS++ G    G+  E L +FR M  +   PD FT+V VL +CA 
Sbjct: 178 RVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAE 237

Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-RDVYSYTA 396
           IG L LG+ VH ++ K  +  +   GNAL+D+YAKCG +D A  +F  M   R V S+T+
Sbjct: 238 IGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTS 297

Query: 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456
           +IVGLA++G    AL +FS M +  + P E+T VGVL ACSH GLV++G ++F  M   Y
Sbjct: 298 LIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEY 357

Query: 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516
            + P+ EH GCMVDL GRAG + EA + I +MPL P+A VW  LLGAC +H K+E+ E  
Sbjct: 358 GITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAA 417

Query: 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576
              LV  +P   G Y+L++N+Y+   RW +   LRK M    V+K PG SLVE+    YE
Sbjct: 418 WARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYE 477

Query: 577 FRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           F  GD+SHP+T +IY++L +I  + +  GYI
Sbjct: 478 FVMGDRSHPETDQIYEMLGDIAERLRRQGYI 508



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 153/532 (28%), Positives = 251/532 (47%), Gaps = 78/532 (14%)

Query: 33  SSKSVGQLKQFHAFIIKTG---SPQH---QTQILYD----KIISLSRGNEIENLSLQNPQ 82
           +S S+   KQ HA  ++     +P H      +L+     K   L     + +  L +P 
Sbjct: 30  ASPSLATAKQLHARALRAAPGVTPSHPLLAKHLLFHLAALKAPPLRYAVAVLSGLLPSPD 89

Query: 83  VYLYNFIIQCL-SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
            +  N +++   S+A P  A+AL+R  L     P+T+T P +L+AC +  +LR G+ +HA
Sbjct: 90  PFSLNTVLRIFASSARPRVALALHRRHLAP---PDTHTYPPLLQACARLLALRYGEGLHA 146

Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
            + K  L+S V+V N+L+ LY  CGL ++ H++F   + P  +R+LVSW +++  +    
Sbjct: 147 EACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFD--EIPPPERNLVSWNSVLNGFAANG 204

Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
            P E +  F +M +    PDG  +V VL+AC+++G L+LG ++H ++      L  +   
Sbjct: 205 RPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAK--VGLVGNAHA 262

Query: 262 HNALIDMYLKCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
            NALID+Y KCG +  ARK+F EM V + VVSW S+I GL   G   +AL +F  M+   
Sbjct: 263 GNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREK 322

Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
           L P + T+V VL +C++                                   CG +D  F
Sbjct: 323 LMPTEITMVGVLYACSH-----------------------------------CGLVDDGF 347

Query: 381 GVFRSMKCRDVYSYTAMIVGLA----IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
             F  MK    Y  T  I  L     + G+A +  +  + ++ + +EP+ V +  +L AC
Sbjct: 348 RYFDQMKAE--YGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGAC 405

Query: 437 SHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           +    +E G   +   +R+  L P  +  Y  + +L+   G   +   L K+M       
Sbjct: 406 AMHKKLEIGEAAW---ARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTM------- 455

Query: 496 VWGALLGACKI--HAKVELAEIVMENLV--RFEPEGDGAYILMTNIYSSKNR 543
                 G  K   H+ VEL   V E ++  R  PE D  Y ++ +I     R
Sbjct: 456 ---VTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRR 504


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 180/532 (33%), Positives = 300/532 (56%), Gaps = 13/532 (2%)

Query: 80  NPQVYLYNF--IIQCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           +P   L  F  I Q  SN    EA+    EM++ G     +    +L AC   ++LR GQ
Sbjct: 15  SPNSVLQTFRPISQLCSNGRLQEALL---EMVMLGPEIGFHCYDALLNACLDKRALREGQ 71

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           +VHA+ +KT  L   Y+   L+  Y  C  ++   K+         ++++VSWT +I  Y
Sbjct: 72  RVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLD----EMPEKNVVSWTAMISRY 127

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            +  + +EA+  F +M +++ +P+      VL++C +   L+LG +IH  I    +N   
Sbjct: 128 SQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVK--WNYDS 185

Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
            +F+ ++L+DMY K G I  AR++F+ +P ++VVS  ++IAG    G  +EAL++F+R+Q
Sbjct: 186 HIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQ 245

Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
             G++P+  T   +L + + +  L+ GK  H ++ +  +     + N+L+DMY+KCG + 
Sbjct: 246 SEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLS 305

Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM-SQVGIEPDEVTFVGVLSAC 436
            A  +F +M  R   S+ AM+VG + HG   + L++F  M  +  ++PD VT + VLS C
Sbjct: 306 YAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGC 365

Query: 437 SHAGLVEEGCKHFLDM-SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAF 495
           SH  + + G   +  M +  Y ++P TEHYGC+VD+ GRAG I EA + IK MP  P A 
Sbjct: 366 SHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAG 425

Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555
           V G+LLGAC++H  V++ E V   L+  EPE  G Y++++N+Y+S  RW++   +R  M 
Sbjct: 426 VLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMM 485

Query: 556 ERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
           ++ V K PG S ++     + F   D++HP+  E+   + EI  + K  GY+
Sbjct: 486 QKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYV 537


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 193/574 (33%), Positives = 299/574 (52%), Gaps = 13/574 (2%)

Query: 41   KQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
            +Q H+FIIK         ++    +Y K  +L    +          V     I+  +  
Sbjct: 470  RQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQE 529

Query: 96   ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
             +  EA  ++R M++ G+ P+  +L  +L  C   Q+L  G+QVH + +K+ L + +Y  
Sbjct: 530  EDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAG 589

Query: 156  NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
            ++L+ +Y  CG I+A   +F         R +VS   +I  Y + D   EAI  F +M  
Sbjct: 590  SSLIDMYVKCGAIEAARYVFS----CMPSRSVVSMNAIIAGYAQNDL-VEAIDLFQEMQN 644

Query: 216  ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
              L P  +    +L AC+    L+LG +IH  I         D F+  +L+ MY+     
Sbjct: 645  EGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGD-FLGVSLLVMYMNSQRK 703

Query: 276  PSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
              A  +F E    K+ + W ++I+G T  G  +EAL +++ M     +PD  T   VL +
Sbjct: 704  TDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRA 763

Query: 335  CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-DVYS 393
            C+ +  L  G+ +H+ +    +++D   G+A+VDMYAKCG +  +  VF  M  + DV S
Sbjct: 764  CSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVIS 823

Query: 394  YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
            + +MIVG A +G A  AL IF EM    I PD+VTF+GVL+ACSHAG V EG + F  M 
Sbjct: 824  WNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMV 883

Query: 454  RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA 513
              Y + P+ +H  CM+DL GR G ++EA + I  +   P+A +W  LLGAC+IH      
Sbjct: 884  HSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRG 943

Query: 514  EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGE 573
                E L+  EPE    Y+L++NIY++   W E   +R+ M+E+ ++K PGCS + V  +
Sbjct: 944  RRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCSWIVVGQK 1003

Query: 574  FYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
               F  GDK HP   EI+ LL +++   K  GYI
Sbjct: 1004 TNLFVAGDKFHPSAGEIHALLKDLIALMKEDGYI 1037



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/411 (30%), Positives = 217/411 (52%), Gaps = 14/411 (3%)

Query: 95  NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
           N    + + L+ EM   G  P+ +T   +L AC   + L +G+Q+H++ +K     N++V
Sbjct: 428 NGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFV 487

Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
            NTL+ +YA CG ++   + F F ++    RD VSW  +I  YV+ +   EA   F  M 
Sbjct: 488 ENTLVDMYAKCGALEEARQQFEFIRN----RDNVSWNAIIVGYVQEEDEDEAFNMFRRMI 543

Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
              + PD + L  +LS C+ L  L  G ++H ++  +   L   ++  ++LIDMY+KCG 
Sbjct: 544 LDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKS--GLQTCLYAGSSLIDMYVKCGA 601

Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
           I +AR VF  MP ++VVS N++IAG   +    EA+D+F+ MQ  GL P + T   +L++
Sbjct: 602 IEAARYVFSCMPSRSVVSMNAIIAGYA-QNDLVEAIDLFQEMQNEGLNPSEITFASLLDA 660

Query: 335 CANIGWLELGKWVHTYLDKNHINTDG-FIGNALVDMYAKCGRIDQAFGVFRSMKC-RDVY 392
           C     L LG+ +H  + K  +  DG F+G +L+ MY    R   A  +F   +  +   
Sbjct: 661 CTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTI 720

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
            +TA+I G   +G + +AL ++ EM +    PD+ TF  VL ACS    + +G    +  
Sbjct: 721 LWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDG---RMIH 777

Query: 453 SRVYNLQPQTEHY--GCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
           S ++++   ++      +VD++ + G ++ ++ + + M    D   W +++
Sbjct: 778 SLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMI 828



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 215/456 (47%), Gaps = 51/456 (11%)

Query: 41  KQFHAFIIKTGSP-----QHQTQILYDKIISLSRGNEIENLSLQNPQVYLYNFIIQCLSN 95
           KQ H  +IK G       +     +Y K  SL    +I +  +    V     I   +  
Sbjct: 202 KQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQV 261

Query: 96  ANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVF 155
             P EA+ ++ +M   GL+P+      V+ AC       VG                   
Sbjct: 262 GLPEEALKVFEDMQKLGLVPDQVAFVTVITAC-------VG------------------- 295

Query: 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ 215
             L RL   C L         F Q P    ++V+W  +I  +VK     EAI  F +M +
Sbjct: 296 --LGRLDDACDL---------FVQMPNT--NVVAWNVMISGHVKRGCDIEAIDFFKNMWK 342

Query: 216 ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275
             ++     L  VLSA + L  L+ G+ +H        N   +V++ ++LI+MY KC  +
Sbjct: 343 TGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLN--SNVYVGSSLINMYAKCEKM 400

Query: 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC 335
            +A+KVFD +  +N+V WN+M+ G    G   + + +F  M+G G  PD+FT   +L++C
Sbjct: 401 EAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSAC 460

Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYT 395
           A +  LE+G+ +H+++ K++   + F+ N LVDMYAKCG +++A   F  ++ RD  S+ 
Sbjct: 461 ACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWN 520

Query: 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG--CKHFLDMS 453
           A+IVG        +A ++F  M   GI PDEV+   +LS C++   +E+G     FL  S
Sbjct: 521 AIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKS 580

Query: 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489
               LQ        ++D++ + G I  A  +   MP
Sbjct: 581 ---GLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMP 613



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/412 (29%), Positives = 196/412 (47%), Gaps = 57/412 (13%)

Query: 78  LQNPQVYLYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136
           L+   +  +N ++   S    LE  I  +  +   G+ PN +T   VL +C +   + +G
Sbjct: 142 LEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLG 201

Query: 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQA 196
           +QVH   +K     N +   +L+ +Y+ CG +    K+F     P    D VSWT +I  
Sbjct: 202 KQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDP----DTVSWTAMIAG 257

Query: 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS 256
           YV++  P EA+  F DM +  L PD +  V V++AC  LG L                  
Sbjct: 258 YVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLD----------------- 300

Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316
                                A  +F +MP  NVV+WN MI+G   RG   EA+D F+ M
Sbjct: 301 --------------------DACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNM 340

Query: 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
              G+K    TL  VL++ A++  L  G  VH    K  +N++ ++G++L++MYAKC ++
Sbjct: 341 WKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKM 400

Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
           + A  VF ++  R++  + AM+ G A +G A K + +FSEM   G  PDE T+  +LSAC
Sbjct: 401 EAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSAC 460

Query: 437 SHAGLVEEGCKHFLDMSRV-------YNLQPQTEHYGCMVDLFGRAGLIREA 481
           +        C   L+M R        +N +        +VD++ + G + EA
Sbjct: 461 A--------CLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEA 504



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 177/408 (43%), Gaps = 74/408 (18%)

Query: 130 SQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS 189
           +Q+ R  + +HA ++K    S   + + ++ LYA CG ++   K F+  +    +RD+++
Sbjct: 94  AQASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLE----KRDILA 149

Query: 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249
           W +++  Y +     + I  F  +    + P+     IVLS+C++L D+ LG ++H  + 
Sbjct: 150 WNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVI 209

Query: 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309
              F  +   F   +LIDMY KCG++  ARK+FD +   + VSW +MIAG    G  +EA
Sbjct: 210 KMGFEFNS--FCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEA 267

Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
           L +F  MQ LGL PD    V V+ +C  +                               
Sbjct: 268 LKVFEDMQKLGLVPDQVAFVTVITACVGL------------------------------- 296

Query: 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429
               GR+D A  +F  M   +V ++  MI G    G   +A+D F  M + G++    T 
Sbjct: 297 ----GRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTL 352

Query: 430 VGVLSACS-----------HAGLVEEG-----------------CKHFLDMSRVYNLQPQ 461
             VLSA +           HA  +++G                 C+      +V++   +
Sbjct: 353 GSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDE 412

Query: 462 TE--HYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGAC 504
                +  M+  + + G   + + L   M      PD F + ++L AC
Sbjct: 413 RNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSAC 460



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 45/248 (18%)

Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
           K +H    K    + G +G+A+VD+YAKCG ++ A   F  ++ RD+ ++ +++   +  
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQ 160

Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-----------HAGLVEEG-------- 445
           G   + +  F  +   G+ P++ T+  VLS+C+           H G+++ G        
Sbjct: 161 GSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCE 220

Query: 446 ---------CKHFLDMSRVYN--LQPQTEHYGCMVDLFGRAGLIREALDLIKSMP---LV 491
                    C   +D  ++++  + P T  +  M+  + + GL  EAL + + M    LV
Sbjct: 221 GSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLV 280

Query: 492 PD--AFV--------WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
           PD  AFV         G L  AC +  ++    +V  N++       G  I   + +  K
Sbjct: 281 PDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFF--K 338

Query: 542 NRWKEALK 549
           N WK  +K
Sbjct: 339 NMWKTGVK 346


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 201/606 (33%), Positives = 322/606 (53%), Gaps = 46/606 (7%)

Query: 31  LESSKSVGQLK---QFHAFIIKT-----GSPQHQTQILYDKIISLSRG----NEIENLSL 78
           L S  ++ +L+   Q HA  +K+     G  +  T  +Y K  ++       +  ENL+ 
Sbjct: 288 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNR 347

Query: 79  QNPQVYLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
           Q+     YN +I   S   +  +A+ L+  ++  GL  +  +L  V +AC   + L  G 
Sbjct: 348 QS-----YNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGL 402

Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
           Q++  ++K++L  +V V N  + +Y  C  +    ++F        +RD VSW  +I A+
Sbjct: 403 QIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFD----EMRRRDAVSWNAIIAAH 458

Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
            +     E +  F  M ++ + PD      +L AC+  G L  G++IH  I  +   ++ 
Sbjct: 459 EQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKS--GMAS 515

Query: 258 DVFIHNALIDMYLKCGNIPSARKV----------------FDEMPVKNV----VSWNSMI 297
           +  +  +LIDMY KCG I  A K+                 ++M  K +    VSWNS+I
Sbjct: 516 NSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSII 575

Query: 298 AGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHIN 357
           +G   + Q ++A  +F RM  +G+ PD FT   VL++CAN+    LGK +H  + K  + 
Sbjct: 576 SGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQ 635

Query: 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417
           +D +I + LVDMY+KCG +  +  +F     RD  ++ AMI G A HGK  +A+ +F  M
Sbjct: 636 SDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERM 695

Query: 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477
               I+P+ VTF+ +L AC+H GL+++G ++F  M R Y L PQ  HY  MVD+ G++G 
Sbjct: 696 ILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGK 755

Query: 478 IREALDLIKSMPLVPDAFVWGALLGACKIHA-KVELAEIVMENLVRFEPEGDGAYILMTN 536
           ++ AL+LI+ MP   D  +W  LLG C IH   VE+AE     L+R +P+   AY L++N
Sbjct: 756 VKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSN 815

Query: 537 IYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDE 596
           +Y+    W++   LR+ M+  K+KK PGCS VE+  E + F  GDK+HP+  EIY+ L  
Sbjct: 816 VYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGL 875

Query: 597 IMHQSK 602
           I  + K
Sbjct: 876 IYSEMK 881



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 197/390 (50%), Gaps = 10/390 (2%)

Query: 93  LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
           L N   L++I ++ +M  +G+  +  T   +LK C   +   +G Q+H   ++    ++V
Sbjct: 156 LQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDV 215

Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
              + L+ +YA     + V  L  F+  P  +++ VSW+ +I   V+ +  + A+  F +
Sbjct: 216 VAASALLDMYAKGK--RFVESLRVFQGIP--EKNSVSWSAIIAGCVQNNLLSLALKFFKE 271

Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
           M + N      I   VL +C+ L +L LG ++H +   + F  + D  +  A +DMY KC
Sbjct: 272 MQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDF--AADGIVRTATLDMYAKC 329

Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
            N+  A+ +FD     N  S+N+MI G +      +AL +F R+   GL  D+ +L  V 
Sbjct: 330 DNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVF 389

Query: 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392
            +CA +  L  G  ++    K+ ++ D  + NA +DMY KC  + +AF VF  M+ RD  
Sbjct: 390 RACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAV 449

Query: 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452
           S+ A+I     +GK ++ L +F  M +  IEPDE TF  +L AC+   L   G    +  
Sbjct: 450 SWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSL---GYGMEIHS 506

Query: 453 SRVYNLQPQTEHYGC-MVDLFGRAGLIREA 481
           S V +        GC ++D++ + G+I EA
Sbjct: 507 SIVKSGMASNSSVGCSLIDMYSKCGMIEEA 536



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/502 (24%), Positives = 218/502 (43%), Gaps = 37/502 (7%)

Query: 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF 175
           +T    +V K C +  +L +G+Q HA+ + +      +V N L+++Y       +   +F
Sbjct: 47  STTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVF 106

Query: 176 H-----------------------------FRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206
                                         F   P   RD+VSW +++  Y++     ++
Sbjct: 107 DKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPV--RDVVSWNSMLSGYLQNGESLKS 164

Query: 207 ILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
           I  F DM +  +  DG    I+L  CS L D SLG++IH  +         DV   +AL+
Sbjct: 165 IEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVV--RVGCDTDVVAASALL 222

Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
           DMY K      + +VF  +P KN VSW+++IAG         AL  F+ MQ +       
Sbjct: 223 DMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQS 282

Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
               VL SCA +  L LG  +H +  K+    DG +  A +DMYAKC  +  A  +F + 
Sbjct: 283 IYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNS 342

Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
           +  +  SY AMI G +     +KAL +F  +   G+  DE++  GV  AC+    + EG 
Sbjct: 343 ENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGL 402

Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
           + +  ++   +L          +D++G+   + EA  +   M    DA  W A++ A + 
Sbjct: 403 QIY-GLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR-RDAVSWNAIIAAHEQ 460

Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV--KKTPG 564
           + K      +  +++R   E D           +       +++   + +  +    + G
Sbjct: 461 NGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVG 520

Query: 565 CSLVEVYGEFYEFRKGDKSHPK 586
           CSL+++Y +     + +K H +
Sbjct: 521 CSLIDMYSKCGMIEEAEKIHSR 542


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.138    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,521,807,301
Number of Sequences: 23463169
Number of extensions: 395811352
Number of successful extensions: 1028616
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9063
Number of HSP's successfully gapped in prelim test: 2787
Number of HSP's that attempted gapping in prelim test: 831702
Number of HSP's gapped (non-prelim): 54569
length of query: 608
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 459
effective length of database: 8,863,183,186
effective search space: 4068201082374
effective search space used: 4068201082374
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)