BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047146
(608 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CMN|A Chain A, Crystal Structure Of A Putative Hydrolase With A Novel
Fold From Chloroflexus Aurantiacus
Length = 372
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY----LDKNHINTDGFI---G 363
+I R Q LGL +DF L L+ + E WV TY L++N G + G
Sbjct: 162 NIARVQQQLGLSDEDFRLWITLHEMTHAFEFEAYPWVRTYFRELLEQNFALVSGQMLSSG 221
Query: 364 NALVDMYAKC 373
N+LVDM +
Sbjct: 222 NSLVDMLMRL 231
>pdb|3T05|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T05|B Chain B, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T05|C Chain C, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T05|D Chain D, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T07|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
With A Naturally Occurring Bis-Indole Alkaloid
pdb|3T07|B Chain B, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
With A Naturally Occurring Bis-Indole Alkaloid
pdb|3T07|C Chain C, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
With A Naturally Occurring Bis-Indole Alkaloid
pdb|3T07|D Chain D, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
With A Naturally Occurring Bis-Indole Alkaloid
pdb|3T0T|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T0T|B Chain B, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T0T|C Chain C, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T0T|D Chain D, Crystal Structure Of S. Aureus Pyruvate Kinase
Length = 606
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 30 RLESSKSVGQ-LKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEI 73
R+++ + V + L + A ++ T P+ +T + D II L RGNE+
Sbjct: 67 RIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEV 111
>pdb|2O2C|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From T.
Brucei Containing Glucose-6-Phosphate In The Active Site
pdb|2O2C|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From T.
Brucei Containing Glucose-6-Phosphate In The Active Site
pdb|2O2C|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From T.
Brucei Containing Glucose-6-Phosphate In The Active Site
pdb|2O2D|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Trypanosoma Brucei Complexed With Citrate
pdb|2O2D|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
Trypanosoma Brucei Complexed With Citrate
pdb|2O2D|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From
Trypanosoma Brucei Complexed With Citrate
Length = 613
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD---KNHINTD 359
G F ++ RR++G+G D L SCA+ W +L K Y D K H TD
Sbjct: 27 GSFNIPYEVTRRLKGVGADAD-----TTLTSCAS--WTQLQKLYEQYGDEPIKKHFETD 78
>pdb|2R5S|A Chain A, The Crystal Structure Of A Domain Of Protein Vp0806
(Unknown Function) From Vibrio Parahaemolyticus Rimd
2210633
pdb|2R5S|B Chain B, The Crystal Structure Of A Domain Of Protein Vp0806
(Unknown Function) From Vibrio Parahaemolyticus Rimd
2210633
Length = 176
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
S+ S+IA L Q E+ ++ R Q L PD+F L C L
Sbjct: 74 SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL 114
>pdb|3FGE|A Chain A, Crystal Structure Of Putative Flavin Reductase With Split
Barrel Domain (Yp_750721.1) From Shewanella
Frigidimarina Ncimb 400 At 1.74 A Resolution
Length = 203
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
+G+ V Y+D N + TDGFI +D A G
Sbjct: 154 IGEIVDVYVDDNAVQTDGFIDLQAIDTVAISG 185
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 16/109 (14%)
Query: 428 TFVGVLSACSHA----------GLVEEGCK-HFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
TF G AC+ A G+VE + L M R+ LQ + G D+ GR
Sbjct: 342 TFGGNPVACAAALATIETIERDGMVERARQIERLVMDRLLRLQAADDRLG---DVRGRGA 398
Query: 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525
+I A++L+KS PDA + L A + L + N++R P
Sbjct: 399 MI--AMELVKSGTAEPDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLP 445
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,705,750
Number of Sequences: 62578
Number of extensions: 715856
Number of successful extensions: 2001
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1998
Number of HSP's gapped (non-prelim): 6
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)