Query 047146
Match_columns 608
No_of_seqs 663 out of 3872
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 08:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6.5E-91 1.4E-95 764.7 68.5 594 6-607 162-770 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.3E-82 2.8E-87 682.8 62.4 523 79-607 83-607 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.4E-76 5.3E-81 649.4 60.5 541 6-554 61-651 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.8E-67 3.9E-72 567.4 56.4 504 54-564 368-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 5.1E-64 1.1E-68 540.6 55.2 487 33-524 382-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.3E-62 9.3E-67 524.1 47.3 445 7-460 98-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5E-31 1.1E-35 297.0 57.8 482 61-555 403-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-30 3E-35 293.4 61.3 535 8-557 273-866 (899)
9 PRK11447 cellulose synthase su 99.9 5.5E-22 1.2E-26 224.3 59.6 415 127-556 279-739 (1157)
10 PRK11447 cellulose synthase su 99.9 6.7E-22 1.5E-26 223.6 55.3 514 31-558 38-667 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.3E-18 2.9E-23 188.1 52.9 516 22-559 45-708 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 3.6E-20 7.8E-25 178.0 35.0 443 89-547 54-509 (966)
13 PRK09782 bacteriophage N4 rece 99.9 7.8E-18 1.7E-22 182.2 52.2 470 66-558 55-673 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 4.6E-20 1E-24 177.2 30.5 417 127-558 58-486 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 3.3E-18 7.1E-23 181.9 45.0 419 122-557 132-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 1.9E-19 4.2E-24 181.8 30.1 288 232-564 45-354 (389)
17 PRK11788 tetratricopeptide rep 99.9 1.4E-18 3.1E-23 175.5 31.3 297 192-523 40-347 (389)
18 PRK15174 Vi polysaccharide exp 99.8 1.4E-17 2.9E-22 176.5 39.1 328 190-528 45-386 (656)
19 PRK10049 pgaA outer membrane p 99.8 3.2E-17 6.9E-22 177.6 42.7 396 122-558 20-457 (765)
20 PRK10049 pgaA outer membrane p 99.8 1.2E-16 2.6E-21 173.1 46.1 399 89-529 21-462 (765)
21 PRK15174 Vi polysaccharide exp 99.8 3.4E-17 7.4E-22 173.5 37.8 326 224-560 44-384 (656)
22 PRK14574 hmsH outer membrane p 99.8 1.8E-15 4E-20 160.6 44.5 427 93-530 44-520 (822)
23 TIGR00990 3a0801s09 mitochondr 99.8 2.6E-15 5.6E-20 159.8 44.4 422 86-528 130-576 (615)
24 PRK14574 hmsH outer membrane p 99.8 3.3E-15 7.2E-20 158.7 44.5 427 120-558 38-514 (822)
25 KOG2002 TPR-containing nuclear 99.8 3.1E-15 6.7E-20 152.0 41.7 538 8-560 176-801 (1018)
26 KOG2002 TPR-containing nuclear 99.8 9.9E-15 2.1E-19 148.4 41.0 516 35-559 178-747 (1018)
27 KOG2003 TPR repeat-containing 99.7 2.7E-14 5.8E-19 133.1 33.0 443 92-543 210-709 (840)
28 KOG4422 Uncharacterized conser 99.7 3.1E-13 6.7E-18 125.3 38.2 324 82-428 115-470 (625)
29 KOG4422 Uncharacterized conser 99.7 2.6E-13 5.7E-18 125.8 35.0 405 37-488 131-587 (625)
30 KOG0495 HAT repeat protein [RN 99.7 1.3E-11 2.8E-16 120.6 47.1 461 97-572 420-893 (913)
31 KOG2076 RNA polymerase III tra 99.7 4.5E-12 9.9E-17 128.6 45.5 534 23-559 141-851 (895)
32 KOG0495 HAT repeat protein [RN 99.7 2.4E-11 5.1E-16 118.8 48.6 441 102-559 366-848 (913)
33 KOG2076 RNA polymerase III tra 99.6 9.9E-13 2.1E-17 133.3 34.1 329 233-567 150-522 (895)
34 PF13429 TPR_15: Tetratricopep 99.6 3.4E-15 7.4E-20 142.7 11.0 255 297-556 15-276 (280)
35 KOG1126 DNA-binding cell divis 99.6 1.8E-13 4E-18 134.3 22.2 161 390-555 420-584 (638)
36 KOG2003 TPR repeat-containing 99.6 1.2E-11 2.5E-16 115.7 32.1 421 131-557 215-689 (840)
37 KOG1126 DNA-binding cell divis 99.5 1E-12 2.2E-17 129.2 22.4 192 364-560 425-623 (638)
38 KOG1155 Anaphase-promoting com 99.5 5E-11 1.1E-15 112.1 32.5 328 218-556 160-494 (559)
39 KOG0547 Translocase of outer m 99.5 1E-11 2.2E-16 117.5 28.0 400 126-555 124-564 (606)
40 KOG1915 Cell cycle control pro 99.5 4.1E-10 8.9E-15 106.3 37.7 469 78-556 102-624 (677)
41 KOG4318 Bicoid mRNA stability 99.5 3.5E-11 7.6E-16 121.6 32.7 430 102-561 10-598 (1088)
42 PRK10747 putative protoheme IX 99.5 1.5E-11 3.2E-16 123.2 29.9 287 200-523 97-390 (398)
43 TIGR00540 hemY_coli hemY prote 99.5 5.3E-11 1.1E-15 119.9 33.5 289 199-521 96-397 (409)
44 PRK10747 putative protoheme IX 99.5 9.1E-11 2E-15 117.5 33.8 275 272-556 97-389 (398)
45 KOG1173 Anaphase-promoting com 99.5 5.7E-10 1.2E-14 107.9 36.8 259 291-556 245-517 (611)
46 KOG1915 Cell cycle control pro 99.5 1.2E-09 2.6E-14 103.2 36.8 416 129-558 85-537 (677)
47 TIGR00540 hemY_coli hemY prote 99.5 3.5E-11 7.7E-16 121.1 28.9 284 163-488 95-396 (409)
48 KOG1155 Anaphase-promoting com 99.5 1.6E-09 3.4E-14 102.3 36.1 156 327-487 332-491 (559)
49 PF13429 TPR_15: Tetratricopep 99.5 6.3E-13 1.4E-17 127.1 12.5 253 194-453 15-275 (280)
50 COG3071 HemY Uncharacterized e 99.4 6.4E-10 1.4E-14 103.3 30.4 287 200-523 97-390 (400)
51 COG2956 Predicted N-acetylgluc 99.4 5E-10 1.1E-14 100.8 27.0 270 200-505 48-326 (389)
52 COG2956 Predicted N-acetylgluc 99.4 3.8E-10 8.2E-15 101.6 25.9 309 235-577 48-367 (389)
53 TIGR02521 type_IV_pilW type IV 99.4 1.7E-10 3.7E-15 107.4 23.5 198 359-557 30-232 (234)
54 KOG4162 Predicted calmodulin-b 99.3 2.5E-08 5.3E-13 100.3 35.3 403 147-557 318-783 (799)
55 COG3071 HemY Uncharacterized e 99.3 6.2E-09 1.3E-13 96.9 28.3 277 272-556 97-389 (400)
56 KOG1173 Anaphase-promoting com 99.3 8E-09 1.7E-13 100.2 28.7 278 258-539 243-534 (611)
57 PF13041 PPR_2: PPR repeat fam 99.3 8.7E-12 1.9E-16 83.4 5.9 50 185-234 1-50 (50)
58 KOG4318 Bicoid mRNA stability 99.3 2.1E-09 4.5E-14 109.1 24.5 252 209-477 12-286 (1088)
59 KOG1174 Anaphase-promoting com 99.3 1.4E-07 3.1E-12 88.0 34.1 286 235-528 209-505 (564)
60 KOG2376 Signal recognition par 99.3 3.2E-07 6.9E-12 89.7 38.0 433 91-554 20-517 (652)
61 KOG2047 mRNA splicing factor [ 99.3 1E-06 2.2E-11 87.0 41.4 157 56-216 102-277 (835)
62 PF13041 PPR_2: PPR repeat fam 99.2 2.5E-11 5.4E-16 81.2 6.9 50 389-438 1-50 (50)
63 KOG1840 Kinesin light chain [C 99.2 3.9E-09 8.6E-14 105.3 25.3 230 326-555 200-477 (508)
64 KOG0547 Translocase of outer m 99.2 1.1E-08 2.4E-13 97.3 26.7 341 192-558 120-492 (606)
65 KOG3785 Uncharacterized conser 99.2 2.6E-07 5.6E-12 84.6 33.7 192 365-561 290-494 (557)
66 PRK12370 invasion protein regu 99.2 5.5E-09 1.2E-13 109.4 26.0 260 289-558 255-536 (553)
67 PRK12370 invasion protein regu 99.2 3.8E-09 8.1E-14 110.7 24.4 226 324-557 255-502 (553)
68 TIGR02521 type_IV_pilW type IV 99.2 1.2E-08 2.6E-13 94.8 24.2 200 290-524 31-233 (234)
69 KOG1156 N-terminal acetyltrans 99.2 5.2E-07 1.1E-11 89.3 35.4 101 459-559 366-470 (700)
70 PRK11189 lipoprotein NlpI; Pro 99.1 1E-08 2.2E-13 98.3 21.7 211 340-559 41-267 (296)
71 KOG1156 N-terminal acetyltrans 99.1 2.7E-06 5.8E-11 84.4 37.8 463 80-555 5-509 (700)
72 KOG4162 Predicted calmodulin-b 99.1 8.7E-07 1.9E-11 89.5 35.0 413 105-528 311-788 (799)
73 KOG1129 TPR repeat-containing 99.1 5.7E-09 1.2E-13 94.1 17.6 231 294-559 227-460 (478)
74 KOG1174 Anaphase-promoting com 99.1 1.1E-06 2.4E-11 82.2 32.3 294 258-559 193-502 (564)
75 KOG1840 Kinesin light chain [C 99.1 5.5E-08 1.2E-12 97.3 25.7 126 397-522 331-478 (508)
76 KOG2047 mRNA splicing factor [ 99.1 8E-06 1.7E-10 80.9 38.8 396 152-556 102-578 (835)
77 COG3063 PilF Tfp pilus assembl 99.1 2E-08 4.3E-13 86.7 18.1 161 394-559 38-204 (250)
78 KOG1129 TPR repeat-containing 99.1 1.1E-08 2.3E-13 92.4 17.0 193 364-561 227-428 (478)
79 PF12569 NARP1: NMDA receptor- 99.1 1.4E-06 3.1E-11 88.4 34.0 411 123-553 10-516 (517)
80 KOG3617 WD40 and TPR repeat-co 99.0 4.9E-06 1.1E-10 84.5 34.9 345 64-451 737-1170(1416)
81 PRK11189 lipoprotein NlpI; Pro 99.0 2.7E-07 5.9E-12 88.4 25.7 229 304-540 40-283 (296)
82 PF04733 Coatomer_E: Coatomer 99.0 5.1E-08 1.1E-12 92.0 19.4 156 366-528 108-270 (290)
83 PF12569 NARP1: NMDA receptor- 99.0 1.1E-06 2.3E-11 89.3 29.7 124 363-488 197-331 (517)
84 KOG3785 Uncharacterized conser 99.0 5.3E-07 1.1E-11 82.6 24.2 170 276-449 271-451 (557)
85 KOG0985 Vesicle coat protein c 98.9 2.4E-05 5.1E-10 81.5 37.5 507 11-549 754-1375(1666)
86 KOG4340 Uncharacterized conser 98.9 1.7E-06 3.7E-11 77.5 25.0 420 111-557 4-443 (459)
87 KOG0548 Molecular co-chaperone 98.9 1.7E-06 3.6E-11 84.1 27.0 215 330-558 229-456 (539)
88 COG3063 PilF Tfp pilus assembl 98.9 6.8E-07 1.5E-11 77.4 21.5 165 361-528 70-241 (250)
89 KOG0985 Vesicle coat protein c 98.9 0.00015 3.2E-09 75.8 40.9 467 59-554 609-1246(1666)
90 KOG3616 Selective LIM binding 98.9 7.3E-06 1.6E-10 82.2 30.2 193 333-552 740-932 (1636)
91 KOG1125 TPR repeat-containing 98.9 2.2E-07 4.8E-12 90.8 19.0 219 336-557 296-527 (579)
92 KOG0624 dsRNA-activated protei 98.9 9.1E-06 2E-10 74.4 27.5 307 191-528 42-375 (504)
93 PF04733 Coatomer_E: Coatomer 98.8 6E-08 1.3E-12 91.5 13.9 189 358-556 64-264 (290)
94 KOG2376 Signal recognition par 98.8 1.8E-05 4E-10 77.8 30.5 411 123-558 18-488 (652)
95 cd05804 StaR_like StaR_like; a 98.8 1.4E-05 3.1E-10 79.6 31.2 256 299-558 52-337 (355)
96 cd05804 StaR_like StaR_like; a 98.8 3.2E-05 7E-10 77.0 31.4 298 187-523 6-336 (355)
97 TIGR03302 OM_YfiO outer membra 98.7 1.7E-06 3.8E-11 80.4 19.3 180 359-558 32-233 (235)
98 KOG0624 dsRNA-activated protei 98.7 0.00013 2.8E-09 67.1 30.0 309 155-493 41-373 (504)
99 PRK10370 formate-dependent nit 98.7 1.6E-06 3.4E-11 77.3 18.0 119 439-559 52-175 (198)
100 PRK15359 type III secretion sy 98.7 1E-06 2.2E-11 74.3 15.5 92 465-556 27-120 (144)
101 KOG1070 rRNA processing protei 98.7 2.2E-06 4.8E-11 91.8 20.9 199 357-560 1455-1666(1710)
102 KOG3617 WD40 and TPR repeat-co 98.7 0.00022 4.8E-09 73.0 33.2 377 116-554 725-1171(1416)
103 KOG1127 TPR repeat-containing 98.7 1.6E-05 3.4E-10 82.8 25.6 399 133-553 474-909 (1238)
104 KOG0548 Molecular co-chaperone 98.7 4.2E-05 9.2E-10 74.6 27.1 166 366-540 304-472 (539)
105 PRK04841 transcriptional regul 98.7 3.6E-05 7.8E-10 87.1 31.4 323 233-557 385-760 (903)
106 KOG3616 Selective LIM binding 98.6 0.00042 9.2E-09 70.1 34.0 193 230-488 740-934 (1636)
107 PRK04841 transcriptional regul 98.6 0.00024 5.3E-09 80.4 37.2 331 196-527 383-764 (903)
108 KOG1127 TPR repeat-containing 98.6 0.00015 3.2E-09 75.9 30.4 445 83-555 492-994 (1238)
109 KOG4340 Uncharacterized conser 98.6 2.5E-05 5.4E-10 70.2 21.6 289 86-388 13-338 (459)
110 KOG1125 TPR repeat-containing 98.6 1.2E-05 2.6E-10 79.0 21.1 247 231-484 294-564 (579)
111 PRK15359 type III secretion sy 98.6 2.3E-06 4.9E-11 72.1 14.1 121 412-539 14-137 (144)
112 PF12854 PPR_1: PPR repeat 98.5 1.2E-07 2.5E-12 56.8 3.7 32 147-178 2-33 (34)
113 PLN02789 farnesyltranstransfer 98.5 5.2E-05 1.1E-09 72.7 23.5 177 375-555 87-300 (320)
114 KOG1914 mRNA cleavage and poly 98.5 0.0016 3.4E-08 64.0 34.6 124 361-488 367-498 (656)
115 KOG1128 Uncharacterized conser 98.5 2.4E-05 5.2E-10 79.0 20.9 213 258-488 397-613 (777)
116 COG5010 TadD Flp pilus assembl 98.5 1.6E-05 3.5E-10 70.6 17.0 156 395-553 70-227 (257)
117 PF12854 PPR_1: PPR repeat 98.4 3.3E-07 7.2E-12 54.8 4.3 33 355-387 2-34 (34)
118 PRK10370 formate-dependent nit 98.4 2.6E-05 5.7E-10 69.5 18.2 154 366-531 22-181 (198)
119 KOG1070 rRNA processing protei 98.4 4.7E-05 1E-09 82.2 22.2 225 291-521 1459-1698(1710)
120 TIGR03302 OM_YfiO outer membra 98.4 2.4E-05 5.2E-10 72.7 18.4 183 323-526 31-235 (235)
121 KOG3081 Vesicle coat complex C 98.4 0.00021 4.6E-09 63.6 22.4 174 348-528 96-276 (299)
122 PRK15179 Vi polysaccharide bio 98.4 4.3E-05 9.3E-10 80.9 21.6 159 390-559 85-247 (694)
123 KOG1914 mRNA cleavage and poly 98.4 0.0027 6E-08 62.4 34.2 147 407-556 347-500 (656)
124 KOG1128 Uncharacterized conser 98.4 1.4E-05 3E-10 80.6 16.7 190 357-556 395-615 (777)
125 PRK15363 pathogenicity island 98.4 9.4E-06 2E-10 67.1 12.8 96 461-556 34-131 (157)
126 COG5010 TadD Flp pilus assembl 98.3 5.1E-05 1.1E-09 67.5 16.9 135 423-559 63-199 (257)
127 KOG3060 Uncharacterized conser 98.3 0.00013 2.9E-09 64.3 18.8 178 374-555 26-218 (289)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.8E-05 3.9E-10 77.3 14.4 124 427-555 170-295 (395)
129 TIGR02552 LcrH_SycD type III s 98.3 1.3E-05 2.9E-10 67.1 11.9 96 462-557 17-114 (135)
130 PLN02789 farnesyltranstransfer 98.3 9.9E-05 2.1E-09 70.8 19.1 192 366-561 43-254 (320)
131 COG4783 Putative Zn-dependent 98.3 0.00052 1.1E-08 66.6 23.0 140 397-558 312-455 (484)
132 COG4783 Putative Zn-dependent 98.2 0.00018 3.9E-09 69.7 19.4 180 374-558 251-438 (484)
133 PRK15179 Vi polysaccharide bio 98.2 0.00032 6.9E-09 74.4 23.1 143 355-501 81-229 (694)
134 PRK14720 transcript cleavage f 98.2 0.00039 8.5E-09 74.6 22.3 128 393-539 118-268 (906)
135 PRK14720 transcript cleavage f 98.1 0.0023 4.9E-08 69.0 27.5 234 223-505 32-268 (906)
136 TIGR00756 PPR pentatricopeptid 98.1 4.4E-06 9.6E-11 50.8 4.2 35 188-222 1-35 (35)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.4E-09 71.9 15.9 126 362-492 171-298 (395)
138 KOG3081 Vesicle coat complex C 98.1 0.00064 1.4E-08 60.7 18.4 243 297-555 15-269 (299)
139 TIGR00756 PPR pentatricopeptid 98.1 6.9E-06 1.5E-10 49.9 4.5 34 392-425 1-34 (35)
140 TIGR02552 LcrH_SycD type III s 98.1 0.00016 3.4E-09 60.5 13.8 113 413-529 5-120 (135)
141 PF13812 PPR_3: Pentatricopept 98.0 8.1E-06 1.8E-10 49.2 4.1 34 187-220 1-34 (34)
142 KOG3060 Uncharacterized conser 98.0 0.0013 2.8E-08 58.4 18.9 166 364-532 56-229 (289)
143 PLN03088 SGT1, suppressor of 98.0 0.0001 2.2E-09 72.5 13.7 100 433-534 9-110 (356)
144 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.3E-10 48.0 4.5 33 392-424 2-34 (34)
145 cd00189 TPR Tetratricopeptide 98.0 0.0001 2.2E-09 56.9 10.4 94 465-558 3-98 (100)
146 PF09976 TPR_21: Tetratricopep 97.9 0.00034 7.4E-09 59.2 14.0 114 439-553 24-143 (145)
147 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00015 3.2E-09 59.0 11.5 93 465-557 5-105 (119)
148 PF14559 TPR_19: Tetratricopep 97.9 2.9E-05 6.3E-10 55.8 5.8 52 505-556 2-53 (68)
149 PF12895 Apc3: Anaphase-promot 97.9 2E-05 4.4E-10 59.4 4.6 78 475-553 2-83 (84)
150 KOG2053 Mitochondrial inherita 97.9 0.054 1.2E-06 57.0 39.3 68 496-563 438-508 (932)
151 PF13414 TPR_11: TPR repeat; P 97.8 4.8E-05 1E-09 54.9 6.1 65 493-557 2-67 (69)
152 PF04840 Vps16_C: Vps16, C-ter 97.8 0.035 7.5E-07 53.4 28.2 120 364-503 181-300 (319)
153 PF09976 TPR_21: Tetratricopep 97.8 0.0013 2.9E-08 55.5 15.3 123 394-520 15-144 (145)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0005 1.1E-08 55.9 12.3 104 428-531 4-113 (119)
155 PF13432 TPR_16: Tetratricopep 97.8 6.9E-05 1.5E-09 53.2 5.7 59 500-558 3-61 (65)
156 KOG0553 TPR repeat-containing 97.7 0.00026 5.5E-09 64.5 10.2 98 434-534 89-189 (304)
157 PF01535 PPR: PPR repeat; Int 97.7 4.3E-05 9.3E-10 44.8 3.4 31 188-218 1-31 (31)
158 PRK02603 photosystem I assembl 97.7 0.00055 1.2E-08 59.9 11.4 95 463-557 36-149 (172)
159 COG4235 Cytochrome c biogenesi 97.7 0.00077 1.7E-08 61.8 12.3 105 459-563 153-262 (287)
160 PRK10153 DNA-binding transcrip 97.7 0.0027 5.9E-08 65.3 17.7 139 388-528 334-487 (517)
161 PF01535 PPR: PPR repeat; Int 97.7 6.2E-05 1.3E-09 44.1 3.5 31 392-422 1-31 (31)
162 COG3898 Uncharacterized membra 97.7 0.059 1.3E-06 51.2 24.3 243 303-559 133-394 (531)
163 PF05843 Suf: Suppressor of fo 97.6 0.0021 4.5E-08 61.0 15.4 134 392-528 2-141 (280)
164 PRK02603 photosystem I assembl 97.6 0.0019 4.1E-08 56.5 14.1 130 390-543 34-166 (172)
165 PF10037 MRP-S27: Mitochondria 97.6 0.00067 1.5E-08 66.8 11.7 123 113-235 62-186 (429)
166 PRK15331 chaperone protein Sic 97.6 0.002 4.4E-08 53.8 12.7 91 466-556 41-133 (165)
167 PLN03088 SGT1, suppressor of 97.6 0.0011 2.3E-08 65.4 13.3 103 397-504 8-113 (356)
168 CHL00033 ycf3 photosystem I as 97.6 0.00075 1.6E-08 58.8 11.0 94 461-554 34-139 (168)
169 KOG0553 TPR repeat-containing 97.6 0.0008 1.7E-08 61.3 10.6 101 399-504 89-192 (304)
170 cd00189 TPR Tetratricopeptide 97.5 0.0012 2.7E-08 50.6 10.6 90 394-487 3-93 (100)
171 COG4700 Uncharacterized protei 97.5 0.016 3.4E-07 49.0 16.6 133 422-556 85-221 (251)
172 PF13432 TPR_16: Tetratricopep 97.5 0.00034 7.4E-09 49.6 6.3 61 468-528 3-65 (65)
173 PF13371 TPR_9: Tetratricopept 97.5 0.00038 8.2E-09 50.8 6.7 58 502-559 3-60 (73)
174 KOG2053 Mitochondrial inherita 97.5 0.19 4.2E-06 53.1 39.8 184 66-252 54-256 (932)
175 PF04840 Vps16_C: Vps16, C-ter 97.5 0.11 2.4E-06 50.0 24.6 111 427-554 178-288 (319)
176 KOG2041 WD40 repeat protein [G 97.5 0.13 2.8E-06 52.7 25.3 236 150-418 690-950 (1189)
177 PF12895 Apc3: Anaphase-promot 97.4 0.00051 1.1E-08 51.7 6.7 80 404-487 2-83 (84)
178 PF14938 SNAP: Soluble NSF att 97.4 0.052 1.1E-06 51.8 21.8 63 464-526 157-228 (282)
179 PF07079 DUF1347: Protein of u 97.3 0.18 3.9E-06 49.1 35.2 414 129-555 18-522 (549)
180 KOG0550 Molecular chaperone (D 97.3 0.011 2.3E-07 56.5 15.1 263 266-555 56-348 (486)
181 PF10037 MRP-S27: Mitochondria 97.3 0.0025 5.4E-08 62.9 11.5 123 148-272 62-186 (429)
182 PF05843 Suf: Suppressor of fo 97.3 0.0034 7.3E-08 59.6 12.1 129 427-557 2-136 (280)
183 PRK10153 DNA-binding transcrip 97.3 0.014 3E-07 60.2 16.9 135 422-560 333-485 (517)
184 PF14559 TPR_19: Tetratricopep 97.2 0.00038 8.2E-09 49.9 3.9 59 438-498 3-62 (68)
185 PF08579 RPM2: Mitochondrial r 97.2 0.0054 1.2E-07 47.3 10.0 80 293-372 28-116 (120)
186 PRK10803 tol-pal system protei 97.2 0.0033 7.2E-08 58.5 10.4 88 469-556 150-245 (263)
187 CHL00033 ycf3 photosystem I as 97.2 0.0085 1.8E-07 52.1 12.4 63 392-454 36-100 (168)
188 PF08579 RPM2: Mitochondrial r 97.2 0.008 1.7E-07 46.4 10.3 79 395-474 29-116 (120)
189 PRK10866 outer membrane biogen 97.1 0.071 1.5E-06 49.3 18.6 170 367-555 39-239 (243)
190 PF13414 TPR_11: TPR repeat; P 97.1 0.0011 2.4E-08 47.6 5.3 64 462-525 3-69 (69)
191 PF12688 TPR_5: Tetratrico pep 97.1 0.0099 2.1E-07 47.7 10.9 86 469-554 8-101 (120)
192 PRK15363 pathogenicity island 97.1 0.031 6.7E-07 46.6 13.9 86 397-487 41-128 (157)
193 KOG0550 Molecular chaperone (D 97.1 0.018 4E-07 54.9 13.9 154 369-526 178-353 (486)
194 KOG2280 Vacuolar assembly/sort 97.1 0.45 9.7E-06 49.5 24.4 338 110-484 425-792 (829)
195 KOG1130 Predicted G-alpha GTPa 97.1 0.0058 1.3E-07 58.1 10.5 256 300-556 27-343 (639)
196 KOG1538 Uncharacterized conser 97.0 0.044 9.6E-07 55.3 16.9 193 307-521 617-844 (1081)
197 PF13281 DUF4071: Domain of un 97.0 0.15 3.4E-06 49.5 20.1 160 365-527 146-338 (374)
198 COG4700 Uncharacterized protei 97.0 0.12 2.6E-06 43.9 16.6 97 323-419 87-188 (251)
199 PF13431 TPR_17: Tetratricopep 97.0 0.00069 1.5E-08 40.4 2.6 33 517-549 2-34 (34)
200 KOG2796 Uncharacterized conser 97.0 0.11 2.3E-06 46.8 16.8 167 262-430 139-323 (366)
201 KOG2796 Uncharacterized conser 96.9 0.05 1.1E-06 48.8 14.7 132 396-527 182-319 (366)
202 KOG1538 Uncharacterized conser 96.9 0.061 1.3E-06 54.4 16.7 192 205-419 618-845 (1081)
203 PF06239 ECSIT: Evolutionarily 96.9 0.013 2.7E-07 51.3 10.4 96 380-476 34-152 (228)
204 PF13371 TPR_9: Tetratricopept 96.9 0.0039 8.4E-08 45.3 6.5 63 469-531 2-66 (73)
205 PF14938 SNAP: Soluble NSF att 96.9 0.048 1E-06 52.0 15.5 118 441-558 89-226 (282)
206 PRK10866 outer membrane biogen 96.8 0.35 7.6E-06 44.7 20.1 23 297-319 39-61 (243)
207 PF12688 TPR_5: Tetratrico pep 96.8 0.025 5.4E-07 45.4 10.9 91 194-284 8-100 (120)
208 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0068 1.5E-07 59.4 8.9 65 493-557 74-141 (453)
209 PRK10803 tol-pal system protei 96.8 0.037 8E-07 51.6 13.4 101 428-528 145-251 (263)
210 PF06239 ECSIT: Evolutionarily 96.7 0.014 3E-07 51.1 9.5 89 287-375 44-153 (228)
211 COG4235 Cytochrome c biogenesi 96.7 0.084 1.8E-06 48.8 15.1 104 423-528 152-261 (287)
212 PF13428 TPR_14: Tetratricopep 96.7 0.003 6.5E-08 40.4 4.2 42 495-536 2-43 (44)
213 KOG0543 FKBP-type peptidyl-pro 96.6 0.05 1.1E-06 52.3 13.3 59 497-555 260-318 (397)
214 PF09205 DUF1955: Domain of un 96.6 0.26 5.6E-06 39.4 15.4 141 401-560 12-152 (161)
215 PF13525 YfiO: Outer membrane 96.5 0.19 4.2E-06 45.1 16.1 141 397-557 11-170 (203)
216 KOG2280 Vacuolar assembly/sort 96.5 1.3 2.8E-05 46.2 30.6 326 192-553 442-795 (829)
217 PF13525 YfiO: Outer membrane 96.5 0.24 5.1E-06 44.5 16.6 163 367-548 12-198 (203)
218 KOG2041 WD40 repeat protein [G 96.5 1.3 2.7E-05 45.9 28.2 254 71-388 679-951 (1189)
219 KOG1920 IkappaB kinase complex 96.5 1.6 3.5E-05 48.1 24.5 112 393-520 941-1052(1265)
220 KOG1130 Predicted G-alpha GTPa 96.5 0.044 9.5E-07 52.3 11.7 153 393-545 197-372 (639)
221 PF13424 TPR_12: Tetratricopep 96.4 0.0067 1.5E-07 44.8 4.9 61 495-555 6-73 (78)
222 KOG0890 Protein kinase of the 96.3 3.9 8.4E-05 48.8 29.9 313 229-559 1390-1733(2382)
223 PF12921 ATP13: Mitochondrial 96.2 0.067 1.4E-06 43.4 10.0 51 422-472 48-98 (126)
224 COG3898 Uncharacterized membra 96.2 1.3 2.8E-05 42.6 28.5 287 189-488 84-389 (531)
225 KOG0543 FKBP-type peptidyl-pro 96.2 0.19 4.2E-06 48.4 14.4 94 464-557 259-355 (397)
226 PRK11906 transcriptional regul 96.2 0.1 2.2E-06 51.5 12.9 66 462-527 338-405 (458)
227 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.5 3.2E-05 43.0 30.3 83 79-164 38-121 (660)
228 PF13424 TPR_12: Tetratricopep 96.0 0.012 2.7E-07 43.3 4.8 59 464-522 7-74 (78)
229 COG1729 Uncharacterized protei 96.0 0.049 1.1E-06 49.6 9.2 59 500-558 184-245 (262)
230 PF03704 BTAD: Bacterial trans 96.0 0.036 7.7E-07 46.9 8.1 69 496-564 64-137 (146)
231 KOG4555 TPR repeat-containing 96.0 0.076 1.6E-06 42.1 8.8 91 470-560 51-147 (175)
232 PF13512 TPR_18: Tetratricopep 95.9 0.24 5.2E-06 40.7 11.9 90 469-558 17-129 (142)
233 PRK11619 lytic murein transgly 95.9 3.1 6.6E-05 44.6 32.5 114 441-554 256-372 (644)
234 PF12921 ATP13: Mitochondrial 95.8 0.16 3.4E-06 41.3 10.5 77 426-502 2-96 (126)
235 PF13428 TPR_14: Tetratricopep 95.7 0.024 5.3E-07 36.1 4.4 29 529-557 2-30 (44)
236 PF03704 BTAD: Bacterial trans 95.6 0.12 2.7E-06 43.5 9.7 69 394-464 65-138 (146)
237 COG0457 NrfG FOG: TPR repeat [ 95.4 2 4.3E-05 39.1 27.3 193 363-557 62-265 (291)
238 COG1729 Uncharacterized protei 95.4 0.19 4.1E-06 46.0 10.4 92 438-529 153-250 (262)
239 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.11 2.4E-06 51.2 9.4 58 428-488 77-138 (453)
240 KOG2610 Uncharacterized conser 95.3 0.6 1.3E-05 43.7 13.2 112 373-488 116-235 (491)
241 PRK09687 putative lyase; Provi 95.2 2.9 6.3E-05 39.6 26.1 80 359-441 141-221 (280)
242 KOG2114 Vacuolar assembly/sort 95.2 5.3 0.00012 42.6 23.2 55 467-522 710-764 (933)
243 PF04053 Coatomer_WDAD: Coatom 95.1 0.95 2.1E-05 45.9 15.7 160 194-386 268-428 (443)
244 PF10300 DUF3808: Protein of u 95.1 1.3 2.9E-05 45.4 17.1 115 439-556 246-375 (468)
245 COG4105 ComL DNA uptake lipopr 95.1 2.5 5.4E-05 38.5 17.2 165 371-555 45-231 (254)
246 PRK11906 transcriptional regul 95.1 2.2 4.7E-05 42.5 17.3 82 478-559 320-403 (458)
247 COG3118 Thioredoxin domain-con 95.1 0.85 1.9E-05 42.2 13.6 121 435-558 143-266 (304)
248 COG5107 RNA14 Pre-mRNA 3'-end 95.1 3.9 8.3E-05 40.3 24.3 133 427-561 398-535 (660)
249 COG4785 NlpI Lipoprotein NlpI, 95.0 0.53 1.2E-05 41.2 11.4 150 403-558 77-267 (297)
250 COG4105 ComL DNA uptake lipopr 95.0 2.8 6.1E-05 38.2 17.7 46 512-557 134-196 (254)
251 KOG3941 Intermediate in Toll s 94.9 0.29 6.3E-06 44.6 9.8 100 378-478 52-174 (406)
252 PF13512 TPR_18: Tetratricopep 94.9 0.96 2.1E-05 37.2 12.1 19 510-528 115-133 (142)
253 smart00299 CLH Clathrin heavy 94.8 2 4.3E-05 35.8 14.8 42 331-373 13-54 (140)
254 COG0457 NrfG FOG: TPR repeat [ 94.7 3.2 6.9E-05 37.6 25.9 197 326-526 60-268 (291)
255 KOG1920 IkappaB kinase complex 94.7 8.2 0.00018 43.0 21.6 127 273-419 894-1027(1265)
256 KOG1258 mRNA processing protei 94.7 6 0.00013 40.6 25.9 118 427-548 298-420 (577)
257 PF10300 DUF3808: Protein of u 94.6 6.4 0.00014 40.5 22.4 157 190-351 191-373 (468)
258 KOG1258 mRNA processing protei 94.5 6.5 0.00014 40.3 29.5 182 359-543 296-490 (577)
259 KOG2114 Vacuolar assembly/sort 94.5 8.1 0.00018 41.3 24.6 53 500-555 711-763 (933)
260 KOG1941 Acetylcholine receptor 94.4 1.3 2.8E-05 42.1 13.3 123 431-553 127-271 (518)
261 smart00299 CLH Clathrin heavy 94.4 2.5 5.3E-05 35.2 14.4 38 366-403 13-53 (140)
262 KOG1941 Acetylcholine receptor 94.4 4.8 0.0001 38.4 16.9 21 530-550 333-353 (518)
263 COG3118 Thioredoxin domain-con 94.3 4.5 9.7E-05 37.7 16.6 175 378-554 121-299 (304)
264 PF13281 DUF4071: Domain of un 94.3 5.8 0.00013 38.9 18.7 74 262-335 144-227 (374)
265 PF08631 SPO22: Meiosis protei 93.9 5.9 0.00013 37.6 21.7 19 503-521 255-273 (278)
266 PF07719 TPR_2: Tetratricopept 93.9 0.2 4.3E-06 29.5 4.9 32 496-527 3-34 (34)
267 KOG4234 TPR repeat-containing 93.9 0.23 5E-06 42.8 6.7 94 435-528 104-202 (271)
268 PF09205 DUF1955: Domain of un 93.8 2.1 4.5E-05 34.4 11.3 138 199-356 14-151 (161)
269 PRK15331 chaperone protein Sic 93.7 2 4.2E-05 36.4 11.9 83 402-488 48-131 (165)
270 PF00515 TPR_1: Tetratricopept 93.6 0.17 3.7E-06 29.9 4.2 32 495-526 2-33 (34)
271 PF02259 FAT: FAT domain; Int 93.5 8.3 0.00018 38.0 20.7 150 389-541 144-305 (352)
272 PF04053 Coatomer_WDAD: Coatom 93.4 1.8 4E-05 43.8 13.6 158 367-554 268-428 (443)
273 PF04184 ST7: ST7 protein; In 93.4 2.3 5E-05 42.5 13.5 56 500-555 265-322 (539)
274 PF13176 TPR_7: Tetratricopept 93.1 0.19 4.1E-06 30.3 3.8 26 530-555 1-26 (36)
275 KOG3941 Intermediate in Toll s 93.0 0.97 2.1E-05 41.4 9.5 109 278-386 53-185 (406)
276 PF07035 Mic1: Colon cancer-as 92.9 4.5 9.9E-05 34.5 13.1 45 263-307 93-137 (167)
277 PF07079 DUF1347: Protein of u 92.9 11 0.00023 37.5 37.2 442 30-499 15-530 (549)
278 PF09613 HrpB1_HrpK: Bacterial 92.5 0.65 1.4E-05 39.0 7.3 70 474-543 22-93 (160)
279 KOG4555 TPR repeat-containing 92.5 0.43 9.4E-06 38.0 5.8 55 502-556 51-105 (175)
280 KOG1585 Protein required for f 92.3 8.4 0.00018 34.8 16.0 24 293-316 34-57 (308)
281 KOG2610 Uncharacterized conser 92.2 1.6 3.4E-05 41.1 10.0 160 402-564 114-283 (491)
282 TIGR02561 HrpB1_HrpK type III 92.2 0.7 1.5E-05 38.1 6.9 52 507-558 23-74 (153)
283 KOG2066 Vacuolar assembly/sort 91.6 22 0.00047 38.0 26.3 94 408-513 611-709 (846)
284 KOG1585 Protein required for f 91.5 3.9 8.4E-05 36.9 11.1 54 501-554 157-216 (308)
285 COG3629 DnrI DNA-binding trans 91.3 1.2 2.5E-05 41.6 8.3 58 498-555 157-214 (280)
286 COG1747 Uncharacterized N-term 90.4 22 0.00047 36.0 21.0 175 357-538 63-249 (711)
287 PF14853 Fis1_TPR_C: Fis1 C-te 90.1 1.5 3.2E-05 29.2 5.8 51 530-606 3-53 (53)
288 PF13181 TPR_8: Tetratricopept 90.0 0.68 1.5E-05 27.2 3.9 31 496-526 3-33 (34)
289 COG3629 DnrI DNA-binding trans 90.0 1.7 3.8E-05 40.5 8.3 79 152-231 153-236 (280)
290 KOG3364 Membrane protein invol 89.9 5.2 0.00011 32.4 9.6 27 502-528 79-105 (149)
291 PRK15180 Vi polysaccharide bio 89.9 5.8 0.00013 39.4 11.8 124 437-562 300-425 (831)
292 KOG4648 Uncharacterized conser 89.7 0.79 1.7E-05 43.1 5.7 109 433-548 104-215 (536)
293 PF04184 ST7: ST7 protein; In 89.5 26 0.00056 35.5 21.3 55 397-452 265-321 (539)
294 PF13176 TPR_7: Tetratricopept 89.4 0.79 1.7E-05 27.5 3.9 28 496-523 1-28 (36)
295 PF09613 HrpB1_HrpK: Bacterial 89.4 12 0.00026 31.6 12.8 88 435-525 19-108 (160)
296 PF13170 DUF4003: Protein of u 89.4 10 0.00022 36.2 13.2 62 408-470 160-225 (297)
297 PF10602 RPN7: 26S proteasome 89.2 3.9 8.5E-05 35.6 9.5 92 463-554 37-139 (177)
298 PF10602 RPN7: 26S proteasome 88.7 6.3 0.00014 34.4 10.5 62 393-454 38-101 (177)
299 PF07719 TPR_2: Tetratricopept 88.7 0.62 1.3E-05 27.3 3.0 30 529-558 2-31 (34)
300 PF02284 COX5A: Cytochrome c o 88.5 7.5 0.00016 29.7 9.0 60 409-470 28-87 (108)
301 KOG0890 Protein kinase of the 88.3 71 0.0015 39.1 24.2 312 192-524 1388-1732(2382)
302 PF00515 TPR_1: Tetratricopept 87.8 1.3 2.9E-05 25.9 4.1 27 393-419 3-29 (34)
303 TIGR02508 type_III_yscG type I 87.2 11 0.00025 28.7 9.6 86 238-329 21-106 (115)
304 PF13431 TPR_17: Tetratricopep 87.1 1.1 2.4E-05 26.5 3.4 31 246-279 3-33 (34)
305 cd00923 Cyt_c_Oxidase_Va Cytoc 86.9 8.4 0.00018 29.1 8.4 48 488-535 36-83 (103)
306 PF02284 COX5A: Cytochrome c o 86.8 5.2 0.00011 30.6 7.4 48 488-535 39-86 (108)
307 PF07721 TPR_4: Tetratricopept 86.6 1 2.2E-05 24.7 2.8 23 530-552 3-25 (26)
308 COG2976 Uncharacterized protei 86.5 22 0.00047 31.1 14.2 114 409-527 70-192 (207)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 86.1 12 0.00027 28.3 8.9 63 406-470 22-84 (103)
310 KOG4570 Uncharacterized conser 85.9 7.8 0.00017 36.4 9.5 96 355-454 59-163 (418)
311 PF13374 TPR_10: Tetratricopep 85.7 1.6 3.4E-05 27.0 3.8 28 529-556 3-30 (42)
312 PF13174 TPR_6: Tetratricopept 85.5 1.9 4E-05 24.9 3.9 25 502-526 8-32 (33)
313 COG2909 MalT ATP-dependent tra 85.4 62 0.0013 35.4 20.2 184 371-558 426-648 (894)
314 PRK10941 hypothetical protein; 85.0 5.7 0.00012 37.2 8.6 63 496-558 183-245 (269)
315 PF13174 TPR_6: Tetratricopept 84.8 1.1 2.4E-05 25.9 2.7 29 530-558 2-30 (33)
316 PF13181 TPR_8: Tetratricopept 84.8 2.2 4.7E-05 24.9 3.9 28 529-556 2-29 (34)
317 KOG4648 Uncharacterized conser 84.7 3.4 7.4E-05 39.0 6.8 95 397-495 103-199 (536)
318 PF04097 Nic96: Nup93/Nic96; 84.5 63 0.0014 34.8 21.9 21 472-492 515-535 (613)
319 COG4455 ImpE Protein of avirul 84.5 11 0.00025 33.4 9.4 63 466-528 5-69 (273)
320 PF00637 Clathrin: Region in C 84.4 0.76 1.6E-05 38.5 2.5 86 121-213 11-96 (143)
321 KOG4570 Uncharacterized conser 84.3 6.9 0.00015 36.7 8.4 104 147-252 59-165 (418)
322 PF11207 DUF2989: Protein of u 84.2 8.6 0.00019 33.8 8.7 76 203-279 122-198 (203)
323 PF14853 Fis1_TPR_C: Fis1 C-te 83.6 3.1 6.8E-05 27.6 4.5 31 499-529 6-36 (53)
324 PF00637 Clathrin: Region in C 83.5 0.98 2.1E-05 37.8 2.8 84 228-316 13-96 (143)
325 PF02259 FAT: FAT domain; Int 83.5 48 0.001 32.6 22.3 52 297-352 5-56 (352)
326 PF13170 DUF4003: Protein of u 83.3 43 0.00094 32.0 17.8 145 408-554 79-243 (297)
327 KOG0276 Vesicle coat complex C 82.7 29 0.00064 35.9 12.7 149 372-554 598-747 (794)
328 PF11207 DUF2989: Protein of u 81.7 9.1 0.0002 33.7 7.9 75 473-548 118-198 (203)
329 KOG4234 TPR repeat-containing 81.5 19 0.00042 31.5 9.5 91 399-493 103-200 (271)
330 PF08631 SPO22: Meiosis protei 81.3 50 0.0011 31.3 25.1 60 393-454 86-149 (278)
331 COG3947 Response regulator con 81.3 6.5 0.00014 36.5 7.0 60 496-555 281-340 (361)
332 PRK11619 lytic murein transgly 81.1 86 0.0019 33.9 35.7 383 156-561 103-509 (644)
333 PRK09687 putative lyase; Provi 81.0 52 0.0011 31.2 26.2 74 359-437 205-278 (280)
334 PRK13800 putative oxidoreducta 80.7 1.1E+02 0.0024 34.8 24.9 255 280-556 625-880 (897)
335 PF13929 mRNA_stabil: mRNA sta 80.4 21 0.00045 33.5 10.1 31 458-488 198-228 (292)
336 KOG1586 Protein required for f 80.2 46 0.00099 30.1 16.4 59 472-530 164-231 (288)
337 KOG1586 Protein required for f 80.2 46 0.00099 30.1 16.6 92 468-559 119-226 (288)
338 KOG1464 COP9 signalosome, subu 79.8 50 0.0011 30.4 16.4 160 364-529 149-338 (440)
339 COG2976 Uncharacterized protei 79.5 43 0.00092 29.4 13.5 116 205-320 70-189 (207)
340 PF09477 Type_III_YscG: Bacter 79.4 27 0.00059 27.1 9.2 88 235-328 19-106 (116)
341 TIGR02561 HrpB1_HrpK type III 79.3 36 0.00077 28.4 11.3 16 200-215 23-38 (153)
342 PF13374 TPR_10: Tetratricopep 78.7 5.4 0.00012 24.4 4.4 29 495-523 3-31 (42)
343 KOG0403 Neoplastic transformat 78.6 75 0.0016 31.7 25.9 104 497-608 512-619 (645)
344 PRK12798 chemotaxis protein; R 78.3 76 0.0016 31.6 22.1 180 373-555 125-322 (421)
345 PRK15180 Vi polysaccharide bio 78.2 19 0.00041 36.0 9.5 51 402-453 334-384 (831)
346 KOG1464 COP9 signalosome, subu 77.9 51 0.0011 30.4 11.5 178 372-549 39-252 (440)
347 smart00028 TPR Tetratricopepti 77.6 4.8 0.0001 22.3 3.8 25 531-555 4-28 (34)
348 KOG2066 Vacuolar assembly/sort 77.1 1.1E+02 0.0024 33.0 27.4 170 194-391 363-536 (846)
349 TIGR03504 FimV_Cterm FimV C-te 77.0 5.2 0.00011 25.3 3.7 27 532-558 3-29 (44)
350 KOG0376 Serine-threonine phosp 76.5 4.3 9.3E-05 40.4 4.8 93 433-528 11-106 (476)
351 PF14561 TPR_20: Tetratricopep 76.4 9.3 0.0002 28.8 5.7 40 517-556 11-50 (90)
352 COG4649 Uncharacterized protei 75.7 51 0.0011 28.3 14.1 86 370-455 104-196 (221)
353 PF04910 Tcf25: Transcriptiona 75.4 89 0.0019 30.9 14.5 64 493-556 99-167 (360)
354 KOG1550 Extracellular protein 75.2 1.2E+02 0.0026 32.3 15.9 51 508-559 378-428 (552)
355 COG4649 Uncharacterized protei 75.1 53 0.0012 28.2 15.9 121 401-522 68-195 (221)
356 PF07035 Mic1: Colon cancer-as 74.9 54 0.0012 28.2 15.6 52 364-415 93-144 (167)
357 PF06552 TOM20_plant: Plant sp 74.3 7.6 0.00016 33.4 5.2 12 588-599 163-174 (186)
358 PF14432 DYW_deaminase: DYW fa 74.3 2.8 6.2E-05 33.4 2.6 25 564-592 2-26 (116)
359 PF06552 TOM20_plant: Plant sp 74.0 21 0.00046 30.8 7.7 43 510-559 96-138 (186)
360 COG4455 ImpE Protein of avirul 73.6 22 0.00049 31.6 7.8 78 190-268 4-81 (273)
361 PF09986 DUF2225: Uncharacteri 73.5 24 0.00052 31.8 8.6 63 496-558 120-195 (214)
362 TIGR02508 type_III_yscG type I 73.5 39 0.00084 25.9 9.6 60 368-430 47-106 (115)
363 KOG1550 Extracellular protein 73.0 1.3E+02 0.0029 31.9 20.3 46 509-557 490-538 (552)
364 PHA02875 ankyrin repeat protei 73.0 55 0.0012 33.2 12.3 72 102-177 15-90 (413)
365 KOG4642 Chaperone-dependent E3 72.9 14 0.0003 33.4 6.5 117 435-554 19-143 (284)
366 smart00386 HAT HAT (Half-A-TPR 72.7 8 0.00017 21.9 3.8 30 508-537 1-30 (33)
367 KOG3807 Predicted membrane pro 72.5 42 0.00091 31.9 9.8 18 512-529 380-397 (556)
368 smart00028 TPR Tetratricopepti 71.9 7.3 0.00016 21.4 3.5 31 496-526 3-33 (34)
369 KOG2396 HAT (Half-A-TPR) repea 71.7 1.2E+02 0.0027 30.9 30.2 239 308-555 300-557 (568)
370 PF04097 Nic96: Nup93/Nic96; 70.7 93 0.002 33.5 13.6 25 533-557 432-456 (613)
371 KOG1308 Hsp70-interacting prot 68.8 3 6.6E-05 39.5 1.8 85 438-524 126-212 (377)
372 KOG4077 Cytochrome c oxidase, 68.4 34 0.00074 27.4 7.1 71 409-490 67-137 (149)
373 PF07163 Pex26: Pex26 protein; 68.2 64 0.0014 30.1 9.8 87 297-383 90-181 (309)
374 PRK13800 putative oxidoreducta 68.0 2.2E+02 0.0048 32.4 26.1 246 185-454 633-880 (897)
375 KOG4507 Uncharacterized conser 67.9 18 0.00039 37.2 6.9 98 437-537 618-719 (886)
376 KOG0686 COP9 signalosome, subu 67.7 1.3E+02 0.0029 29.7 14.1 154 363-521 153-331 (466)
377 PF10579 Rapsyn_N: Rapsyn N-te 67.2 14 0.00031 26.8 4.5 45 506-550 18-65 (80)
378 PHA02875 ankyrin repeat protei 67.0 1.5E+02 0.0032 30.0 18.0 14 409-422 298-311 (413)
379 KOG1498 26S proteasome regulat 66.6 1.4E+02 0.003 29.5 16.1 221 373-598 25-279 (439)
380 KOG4507 Uncharacterized conser 66.4 26 0.00057 36.1 7.7 136 423-560 568-708 (886)
381 KOG4077 Cytochrome c oxidase, 66.4 32 0.00068 27.6 6.5 49 487-535 77-125 (149)
382 COG4785 NlpI Lipoprotein NlpI, 65.6 1E+02 0.0022 27.7 15.5 82 235-319 78-162 (297)
383 PF08311 Mad3_BUB1_I: Mad3/BUB 65.4 45 0.00098 27.1 7.8 60 491-553 63-124 (126)
384 PF10579 Rapsyn_N: Rapsyn N-te 64.8 24 0.00053 25.6 5.2 42 404-445 19-62 (80)
385 PF10345 Cohesin_load: Cohesin 64.7 2.1E+02 0.0045 30.9 28.6 163 188-351 60-251 (608)
386 TIGR03504 FimV_Cterm FimV C-te 63.8 18 0.00038 23.0 4.0 24 397-420 5-28 (44)
387 PF09477 Type_III_YscG: Bacter 63.7 69 0.0015 25.0 8.8 78 341-421 22-99 (116)
388 PF04190 DUF410: Protein of un 63.6 1.3E+02 0.0028 28.2 17.6 113 164-291 2-122 (260)
389 COG3947 Response regulator con 63.6 1.3E+02 0.0029 28.3 13.0 67 260-326 280-354 (361)
390 PF14863 Alkyl_sulf_dimr: Alky 62.6 35 0.00076 28.3 6.7 63 478-543 57-119 (141)
391 KOG0276 Vesicle coat complex C 62.3 68 0.0015 33.4 9.7 77 154-248 616-692 (794)
392 KOG0403 Neoplastic transformat 61.8 1.8E+02 0.0039 29.2 18.8 59 364-422 513-574 (645)
393 PF13762 MNE1: Mitochondrial s 61.7 95 0.002 25.9 10.3 76 364-439 43-128 (145)
394 PF11846 DUF3366: Domain of un 61.7 34 0.00074 30.3 7.2 37 489-525 139-175 (193)
395 PRK10941 hypothetical protein; 61.1 70 0.0015 30.1 9.2 64 466-529 185-250 (269)
396 KOG4279 Serine/threonine prote 61.0 1.2E+02 0.0025 32.7 11.2 182 292-527 203-399 (1226)
397 PF09670 Cas_Cas02710: CRISPR- 61.0 1.7E+02 0.0038 29.2 12.6 53 401-454 141-197 (379)
398 PF12862 Apc5: Anaphase-promot 60.5 33 0.00072 26.0 5.9 53 504-556 8-69 (94)
399 PF10366 Vps39_1: Vacuolar sor 60.5 42 0.00092 26.4 6.5 28 392-419 40-67 (108)
400 KOG0545 Aryl-hydrocarbon recep 59.5 1.4E+02 0.0031 27.3 10.4 50 506-555 242-291 (329)
401 PF14669 Asp_Glu_race_2: Putat 58.6 1.3E+02 0.0028 26.4 14.5 56 498-553 136-206 (233)
402 KOG2471 TPR repeat-containing 58.6 95 0.0021 31.5 9.7 103 368-473 248-380 (696)
403 KOG2063 Vacuolar assembly/sort 58.5 2.8E+02 0.006 31.1 14.2 132 189-337 506-638 (877)
404 PF04910 Tcf25: Transcriptiona 58.3 2E+02 0.0043 28.5 17.4 54 399-452 111-165 (360)
405 COG4976 Predicted methyltransf 57.3 23 0.00049 31.8 4.9 59 504-562 5-63 (287)
406 cd08819 CARD_MDA5_2 Caspase ac 56.9 80 0.0017 23.6 7.1 38 372-410 48-85 (88)
407 KOG3364 Membrane protein invol 56.7 92 0.002 25.6 7.7 64 423-488 29-97 (149)
408 PF07163 Pex26: Pex26 protein; 56.3 1.1E+02 0.0023 28.8 9.0 85 194-282 90-181 (309)
409 KOG4642 Chaperone-dependent E3 56.0 1.4E+02 0.003 27.4 9.4 117 370-488 20-143 (284)
410 KOG2063 Vacuolar assembly/sort 54.6 3.5E+02 0.0077 30.3 16.4 116 154-271 506-638 (877)
411 PF11846 DUF3366: Domain of un 53.7 49 0.0011 29.2 6.8 31 458-488 140-170 (193)
412 COG5191 Uncharacterized conser 53.7 28 0.00062 32.7 5.1 80 457-536 102-184 (435)
413 PF13762 MNE1: Mitochondrial s 53.5 1.3E+02 0.0029 25.1 10.6 53 289-341 78-131 (145)
414 PF11848 DUF3368: Domain of un 52.2 54 0.0012 21.2 4.9 34 197-230 12-45 (48)
415 PRK13342 recombination factor 51.7 2.8E+02 0.006 28.2 15.6 44 394-437 230-276 (413)
416 PF11768 DUF3312: Protein of u 51.2 2.7E+02 0.0058 29.0 11.8 56 364-419 412-472 (545)
417 cd08819 CARD_MDA5_2 Caspase ac 50.6 1E+02 0.0022 23.0 6.6 37 271-308 48-84 (88)
418 KOG0292 Vesicle coat complex C 50.0 2.6E+02 0.0057 30.9 11.8 132 368-523 651-782 (1202)
419 PF13929 mRNA_stabil: mRNA sta 49.8 2.3E+02 0.005 26.8 18.4 114 375-488 143-264 (292)
420 KOG0292 Vesicle coat complex C 49.6 27 0.00058 37.9 4.8 75 432-522 626-700 (1202)
421 PF04090 RNA_pol_I_TF: RNA pol 49.1 1.9E+02 0.0042 25.7 9.9 36 391-427 41-76 (199)
422 KOG3824 Huntingtin interacting 49.0 32 0.0007 32.3 4.7 58 473-530 127-186 (472)
423 PF14561 TPR_20: Tetratricopep 48.9 1.1E+02 0.0025 23.0 7.9 62 493-554 21-85 (90)
424 cd00280 TRFH Telomeric Repeat 48.0 1.4E+02 0.003 26.1 7.8 22 194-215 118-139 (200)
425 PF06957 COPI_C: Coatomer (COP 47.4 1.2E+02 0.0027 30.5 8.8 57 485-555 289-347 (422)
426 KOG0551 Hsp90 co-chaperone CNS 46.4 1E+02 0.0022 29.7 7.5 86 469-554 88-179 (390)
427 COG4976 Predicted methyltransf 46.2 34 0.00073 30.8 4.2 55 473-527 6-62 (287)
428 KOG4567 GTPase-activating prot 45.9 2.8E+02 0.006 26.5 10.0 43 208-250 264-306 (370)
429 PF10345 Cohesin_load: Cohesin 45.7 4.2E+02 0.0091 28.6 36.8 49 507-555 547-604 (608)
430 PF12862 Apc5: Anaphase-promot 45.7 91 0.002 23.6 6.2 24 500-523 47-70 (94)
431 PRK10564 maltose regulon perip 45.4 35 0.00077 32.2 4.5 43 185-227 254-297 (303)
432 KOG4567 GTPase-activating prot 45.1 2.8E+02 0.0061 26.5 10.0 77 310-391 263-349 (370)
433 PF14689 SPOB_a: Sensor_kinase 44.5 34 0.00074 23.6 3.3 25 531-555 26-50 (62)
434 COG2912 Uncharacterized conser 43.6 1E+02 0.0022 28.8 7.0 56 501-556 188-243 (269)
435 PF11663 Toxin_YhaV: Toxin wit 43.3 34 0.00073 27.9 3.5 30 96-127 108-138 (140)
436 PRK14700 recombination factor 43.1 2.9E+02 0.0062 26.4 10.0 49 292-340 125-176 (300)
437 PF12069 DUF3549: Protein of u 42.5 3.3E+02 0.0073 26.5 12.4 133 265-399 172-306 (340)
438 COG5108 RPO41 Mitochondrial DN 42.4 1.2E+02 0.0026 32.1 7.9 75 431-505 33-114 (1117)
439 cd00280 TRFH Telomeric Repeat 41.7 1.8E+02 0.0039 25.4 7.7 13 442-454 85-97 (200)
440 PRK13342 recombination factor 41.3 4E+02 0.0086 27.1 18.2 101 219-339 173-279 (413)
441 PF11838 ERAP1_C: ERAP1-like C 40.5 3.5E+02 0.0075 26.1 18.6 97 441-537 145-245 (324)
442 PF11848 DUF3368: Domain of un 40.2 1E+02 0.0022 19.9 5.2 33 402-434 13-45 (48)
443 PF14669 Asp_Glu_race_2: Putat 40.1 2.6E+02 0.0057 24.6 13.8 174 182-385 3-206 (233)
444 PF04190 DUF410: Protein of un 39.3 3.3E+02 0.0071 25.5 18.4 140 300-454 20-169 (260)
445 PF08424 NRDE-2: NRDE-2, neces 39.2 3.7E+02 0.0081 26.1 12.9 123 442-566 47-192 (321)
446 PF10366 Vps39_1: Vacuolar sor 38.8 1.9E+02 0.0042 22.7 8.2 27 292-318 41-67 (108)
447 PF14689 SPOB_a: Sensor_kinase 38.5 53 0.0012 22.6 3.5 26 394-419 26-51 (62)
448 PF11663 Toxin_YhaV: Toxin wit 38.1 45 0.00098 27.2 3.5 32 199-232 107-138 (140)
449 PF08311 Mad3_BUB1_I: Mad3/BUB 37.9 2.2E+02 0.0048 23.1 8.3 43 240-283 81-123 (126)
450 TIGR02270 conserved hypothetic 37.6 4.5E+02 0.0098 26.6 25.2 121 358-489 159-279 (410)
451 KOG2034 Vacuolar sorting prote 37.4 6.2E+02 0.014 28.2 22.8 65 443-509 610-676 (911)
452 COG2909 MalT ATP-dependent tra 37.4 6.3E+02 0.014 28.2 29.5 217 335-554 425-685 (894)
453 PRK14962 DNA polymerase III su 37.2 4.9E+02 0.011 27.0 12.8 40 294-334 248-287 (472)
454 KOG0991 Replication factor C, 37.1 3.3E+02 0.0072 24.9 11.7 46 381-427 229-274 (333)
455 PRK10564 maltose regulon perip 37.0 71 0.0015 30.3 5.1 42 392-433 258-299 (303)
456 smart00777 Mad3_BUB1_I Mad3/BU 35.9 2.4E+02 0.0052 22.9 7.9 70 480-552 51-123 (125)
457 KOG2471 TPR repeat-containing 35.5 5.1E+02 0.011 26.7 12.5 67 501-567 213-282 (696)
458 PF10475 DUF2450: Protein of u 35.0 3.9E+02 0.0084 25.5 10.1 53 264-318 103-155 (291)
459 KOG4521 Nuclear pore complex, 34.7 7.9E+02 0.017 28.6 13.9 130 225-354 986-1132(1480)
460 KOG4521 Nuclear pore complex, 34.5 7.9E+02 0.017 28.5 14.6 22 366-387 926-947 (1480)
461 TIGR02270 conserved hypothetic 34.0 5.2E+02 0.011 26.2 25.1 119 323-451 98-216 (410)
462 KOG0687 26S proteasome regulat 33.7 4.5E+02 0.0097 25.4 13.2 20 432-451 110-129 (393)
463 KOG0991 Replication factor C, 33.2 3.9E+02 0.0084 24.6 15.5 149 364-538 134-282 (333)
464 KOG1308 Hsp70-interacting prot 32.3 47 0.001 31.9 3.1 117 401-521 124-242 (377)
465 PRK11639 zinc uptake transcrip 32.2 1.8E+02 0.004 25.0 6.7 42 399-440 33-74 (169)
466 PF11768 DUF3312: Protein of u 32.1 3E+02 0.0065 28.7 8.9 57 262-318 411-472 (545)
467 COG0735 Fur Fe2+/Zn2+ uptake r 31.9 2.4E+02 0.0052 23.6 7.1 46 395-440 24-69 (145)
468 cd08326 CARD_CASP9 Caspase act 31.7 1.5E+02 0.0032 22.1 5.1 37 271-307 42-78 (84)
469 COG0735 Fur Fe2+/Zn2+ uptake r 31.6 2.4E+02 0.0051 23.6 7.0 44 229-274 27-70 (145)
470 PHA03100 ankyrin repeat protei 31.4 6E+02 0.013 26.2 14.7 21 157-177 143-165 (480)
471 KOG0686 COP9 signalosome, subu 31.3 5.5E+02 0.012 25.7 14.1 59 260-318 151-215 (466)
472 KOG2297 Predicted translation 31.1 3.4E+02 0.0075 25.9 8.3 141 87-242 200-341 (412)
473 PF07720 TPR_3: Tetratricopept 30.7 1.2E+02 0.0027 18.1 4.8 16 501-516 8-23 (36)
474 PF07575 Nucleopor_Nup85: Nup8 30.6 5.6E+02 0.012 27.4 11.3 60 324-385 404-463 (566)
475 PF09670 Cas_Cas02710: CRISPR- 30.0 5.8E+02 0.012 25.6 12.3 55 299-354 140-198 (379)
476 KOG0376 Serine-threonine phosp 29.8 1.2E+02 0.0025 30.8 5.5 48 404-453 17-65 (476)
477 PF10255 Paf67: RNA polymerase 29.5 1.1E+02 0.0025 30.5 5.5 26 529-554 165-190 (404)
478 PF11123 DNA_Packaging_2: DNA 29.4 1.4E+02 0.0031 21.3 4.3 32 477-508 12-45 (82)
479 smart00544 MA3 Domain in DAP-5 29.2 2.8E+02 0.0061 21.7 8.1 21 296-316 8-28 (113)
480 KOG3636 Uncharacterized conser 29.0 4.6E+02 0.0099 26.4 9.1 85 318-403 176-272 (669)
481 KOG3824 Huntingtin interacting 29.0 2E+02 0.0043 27.3 6.5 54 436-492 126-181 (472)
482 COG5159 RPN6 26S proteasome re 28.7 5.1E+02 0.011 24.5 15.8 33 296-328 9-41 (421)
483 PF02847 MA3: MA3 domain; Int 28.7 1.4E+02 0.003 23.4 5.1 21 296-316 8-28 (113)
484 KOG1839 Uncharacterized protei 28.7 6.9E+02 0.015 29.3 11.6 121 434-556 940-1085(1236)
485 PF10255 Paf67: RNA polymerase 28.5 1.5E+02 0.0032 29.8 6.0 56 262-317 125-191 (404)
486 PF10516 SHNi-TPR: SHNi-TPR; 27.9 1.4E+02 0.0031 18.1 3.7 28 529-556 2-29 (38)
487 TIGR02498 type_III_ssaH type I 27.7 1.5E+02 0.0033 21.5 4.3 51 504-554 16-66 (79)
488 COG5108 RPO41 Mitochondrial DN 27.1 3.3E+02 0.0071 29.1 8.2 74 227-300 33-113 (1117)
489 PF15297 CKAP2_C: Cytoskeleton 26.8 2.8E+02 0.006 27.0 7.2 51 477-527 118-173 (353)
490 COG4259 Uncharacterized protei 26.8 2.3E+02 0.0051 21.8 5.3 39 515-553 58-97 (121)
491 PF11817 Foie-gras_1: Foie gra 26.7 2.2E+02 0.0048 26.4 6.7 19 399-417 186-204 (247)
492 cd07153 Fur_like Ferric uptake 26.7 1.8E+02 0.0038 23.0 5.4 45 193-237 6-50 (116)
493 PF12926 MOZART2: Mitotic-spin 26.3 2.8E+02 0.0061 20.7 7.3 41 346-386 29-69 (88)
494 PRK11639 zinc uptake transcrip 26.0 2.8E+02 0.0061 23.9 6.7 23 202-224 40-62 (169)
495 KOG1524 WD40 repeat-containing 25.8 3.8E+02 0.0081 27.8 8.1 22 30-51 89-110 (737)
496 PRK13341 recombination factor 25.7 9.5E+02 0.02 26.7 16.5 129 217-359 192-332 (725)
497 cd08326 CARD_CASP9 Caspase act 25.5 2.9E+02 0.0062 20.6 6.2 39 372-410 42-80 (84)
498 COG5159 RPN6 26S proteasome re 25.4 5.9E+02 0.013 24.2 19.2 48 193-240 9-63 (421)
499 PF11817 Foie-gras_1: Foie gra 25.4 4.3E+02 0.0093 24.5 8.4 22 531-552 221-242 (247)
500 PLN03192 Voltage-dependent pot 25.3 9.5E+02 0.021 27.2 12.5 197 137-349 476-676 (823)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.5e-91 Score=764.71 Aligned_cols=594 Identities=35% Similarity=0.617 Sum_probs=575.4
Q ss_pred cccCCCCchhhhHHHHHHhhcccc-------hhhccC---ChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHH
Q 047146 6 TVASGSRYNDINTFQQLSLLHQSP-------RLESSK---SVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIE 74 (608)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A 74 (608)
+.+.|...+|..+|..+...+..| ++++|+ ++..++++|+++++.|+.++..+.+ |+.+|+++|++++|
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 241 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH
Confidence 456788999999999987666555 466675 4678999999999999999999999 99999999999999
Q ss_pred Hh---hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCC
Q 047146 75 NL---SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150 (608)
Q Consensus 75 ~~---~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 150 (608)
.+ .|+.||+++||+||.+|++.|+.++ +++|.+|.+.|+.||..||+.+|.+|++.|+++.|.++|..+.+.|+.|
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 99 8999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
|..+||+||.+|+++|++++|.++|++| ..||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 9999999999999999999999999995 468999999999999999999999999999999999999999999999
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHH
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (608)
+|++.|+++.|.++++.+.+.|+. |+..++++|+++|+++|++++|.++|++|.++|.++||++|.+|++.|+.++|+
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~--~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLI--SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999655 499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 390 (608)
.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d 553 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKD 553 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCC
Confidence 99999986 5999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+++++
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999966899999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHH
Q 047146 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 550 (608)
+|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++...+++.+++|+++..|..|+++|++.|+|++|.++
T Consensus 634 ~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred HHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhhCCCC
Q 047146 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607 (608)
Q Consensus 551 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 607 (608)
++.|+++|++++||+||+++++++|.|..+|.+||+..+||..|+++..+|++.||+
T Consensus 714 r~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~ 770 (857)
T PLN03077 714 RKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLA 770 (857)
T ss_pred HHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999999999999999999999999999999999996
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-82 Score=682.77 Aligned_cols=523 Identities=33% Similarity=0.558 Sum_probs=511.0
Q ss_pred CCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCC-CCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHH
Q 047146 79 QNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156 (608)
Q Consensus 79 ~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 156 (608)
..++..+|+.+|.++.+.|++++ +++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567899999999999999999 99999998765 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC
Q 047146 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236 (608)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 236 (608)
.|+++|+++|++++|.++|++| +.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 9999999999999999999995 568999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047146 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316 (608)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 316 (608)
+.+.+.+++..+.+.|+. ||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|
T Consensus 239 ~~~~~~~l~~~~~~~g~~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVV--GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred cHHHHHHHHHHHHHhCCC--ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999655 499999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHH
Q 047146 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396 (608)
Q Consensus 317 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 396 (608)
.+.|+.||..||+.++.+|++.|.++.|.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+.+||+
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 476 (608)
||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999987899999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 477 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
++++|.+++++|+..|+..+|++++.+|..+|+++.|..+++++.++.|++..+|..|+++|.+.|+|++|.+++++|++
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhhCCCC
Q 047146 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607 (608)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 607 (608)
+|+++.|++||+.+++.+|.|.+++..||+..++|..|+++..+|++.||+
T Consensus 557 ~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 557 KGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYV 607 (697)
T ss_pred cCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999996
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-76 Score=649.36 Aligned_cols=541 Identities=26% Similarity=0.431 Sum_probs=473.5
Q ss_pred cccCCCCchhhhHHHHHHhhcccc-------hhhccC---ChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHH
Q 047146 6 TVASGSRYNDINTFQQLSLLHQSP-------RLESSK---SVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIE 74 (608)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A 74 (608)
+.++|...++..+|..+...+..| ++++|. .+..+.++|+.+++.|+.++..+.+ ++.+|+++|+++.|
T Consensus 61 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A 140 (857)
T PLN03077 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHA 140 (857)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHH
Confidence 457788999999999877644332 345553 5788999999999999999999999 99999999999999
Q ss_pred Hh---hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCC
Q 047146 75 NL---SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150 (608)
Q Consensus 75 ~~---~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 150 (608)
.+ +|++||+++||++|.+|++.|+.++ +++|++|...|+.||.+||+.+|++|+..+++..+.++|..+.+.|+.|
T Consensus 141 ~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~ 220 (857)
T PLN03077 141 WYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220 (857)
T ss_pred HHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCc
Confidence 99 9999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
|..++|+||.+|+++|++++|.++|++ ++.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~----m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDR----MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhc----CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 999999999999999999999999999 4568999999999999999999999999999999999999999999999
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHH
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (608)
+|++.|+++.|.+++..+.+.|+. ||..+|++|+.+|+++|++++|.++|++|..||.++||++|.+|++.|++++|+
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFA--VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCc--cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999654 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 390 (608)
++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++|++++|.++|++|.++|
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 454 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHH-
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV- 469 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~- 469 (608)
+++||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+ .|+.++..++++|+
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~ 532 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLD 532 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHH
Confidence 99999999999999999999999999986 5999999999999999999999999998888877 57665555545555
Q ss_pred -----------------------------HHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 470 -----------------------------DLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 470 -----------------------------~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
.+|++.|+.++|+++|++| ++.||..||++++.+|.+.|++++|.++|
T Consensus 533 ~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 4455555555555555554 44555555555555555555555555555
Q ss_pred HHHHhcC--CCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 518 ENLVRFE--PEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 518 ~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
+.|.+.. .++..+|.+++++|.+.|++++|.+++++|
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 5555221 222345555555555555555555555555
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-67 Score=567.37 Aligned_cols=504 Identities=16% Similarity=0.244 Sum_probs=464.4
Q ss_pred CchhHHH-HHHHHHccCCchHHHh---hCCCCC-----cchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHH
Q 047146 54 QHQTQIL-YDKIISLSRGNEIENL---SLQNPQ-----VYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYV 123 (608)
Q Consensus 54 ~~~~~~~-l~~~~~~~g~~~~A~~---~~~~~~-----~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~l 123 (608)
++..... +...++++|++++|.+ .|+.++ ...++.++.+|.+.|..++ +.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 3444444 8888889999999999 555444 4556677788999999999 999999974 999999999
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCc
Q 047146 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203 (608)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 203 (608)
|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|...++.||..+||+||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHc
Q 047146 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283 (608)
Q Consensus 204 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 283 (608)
++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.+.+..||..+|+++|.+|+++|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998666778899999999999999999999999999
Q ss_pred cCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 047146 284 EMP----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359 (608)
Q Consensus 284 ~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (608)
.|. .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 997 4677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMK----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999995 689999999999999999999999999999999999999999999999
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cC-------------------CHHHHHHHHHhC---C
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AG-------------------LIREALDLIKSM---P 489 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g-------------------~~~~A~~~~~~~---~ 489 (608)
|++.|++++|.++|..|.+ .|+.||..+|++++.+|.+ ++ ..++|..+|++| +
T Consensus 764 ~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 9999999999999999998 6999999999999977432 22 246799999999 8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCc
Q 047146 490 LVPDAFVWGALLGACKIHAKVELAEIVMENLVRF-EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564 (608)
Q Consensus 490 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 564 (608)
+.||..||+.++.++.+.+..+.+..+++.+... .+++..+|+.|++.+.+. .++|..++++|.+.|+.|+..
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999998888888899888888876533 455667999999988432 368999999999999998765
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-64 Score=540.63 Aligned_cols=487 Identities=15% Similarity=0.200 Sum_probs=458.7
Q ss_pred ccCChhHHHHHHHHHHHhCC-CCchhHHH-HHHHHHccCCchHHHh---hCCCCCcchHHHHHHHHHcCCCccH-HHHHH
Q 047146 33 SSKSVGQLKQFHAFIIKTGS-PQHQTQIL-YDKIISLSRGNEIENL---SLQNPQVYLYNFIIQCLSNANPLEA-IALYR 106 (608)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~-l~~~~~~~g~~~~A~~---~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~ 106 (608)
.++++..+.+++..|.+.|. +++....+ ++..|++.|..++|.. .|+.||..+||.+|.+|++.|+.+. .++|+
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 45788999999999999996 45667777 9999999999999998 7888999999999999999999999 99999
Q ss_pred HHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCC
Q 047146 107 EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRD 186 (608)
Q Consensus 107 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 186 (608)
+|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|...+..||
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHH--CCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHH
Q 047146 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQ--ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264 (608)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 264 (608)
..+||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.++ .|+..+|+.
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi--~p~~~tyns 619 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI--KGTPEVYTI 619 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCChHHHHH
Confidence 99999999999999999999999999976 67999999999999999999999999999999999854 559999999
Q ss_pred HHHHHHhcCChHHHHHHHccCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC
Q 047146 265 LIDMYLKCGNIPSARKVFDEMP----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340 (608)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 340 (608)
+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999997 689999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 047146 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK----CRDVYSYTAMIVGLAIHGKAWKALDIFSE 416 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 416 (608)
+++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.++|.+++++
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 58999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc----c-------------------ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 047146 417 MSQVGIEPDEVTFVGVLSACSH----A-------------------GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473 (608)
Q Consensus 417 m~~~g~~p~~~~~~~ll~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 473 (608)
|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+ .|+.||..+|+.++.+++
T Consensus 780 M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~cl~ 858 (1060)
T PLN03218 780 AKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLGCLQ 858 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhc
Confidence 9999999999999999876542 1 124679999999999 699999999999999999
Q ss_pred hcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 474 RAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 474 ~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
+.+..+.+..+++.| +..|+..+|++++.++.+. .++|..++++|.+.+
T Consensus 859 ~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 859 LPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred ccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999998 4567889999999998432 468999999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-62 Score=524.07 Aligned_cols=445 Identities=24% Similarity=0.370 Sum_probs=419.7
Q ss_pred ccCCCCchhhhHHHHHHhhc-c-------cchhhccC---ChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHH
Q 047146 7 VASGSRYNDINTFQQLSLLH-Q-------SPRLESSK---SVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIE 74 (608)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A 74 (608)
...|++..|..+|..+...+ . ..++.+|. +++.+.++|..+.+.|+.|+..+.+ |+++|+++|+++.|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 45788899999999876533 1 22355554 6788999999999999999999999 99999999999999
Q ss_pred Hh---hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCC
Q 047146 75 NL---SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150 (608)
Q Consensus 75 ~~---~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 150 (608)
.+ +|+.||+++||++|.+|++.|+.++ +++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+.|+.+
T Consensus 178 ~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~ 257 (697)
T PLN03081 178 RRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257 (697)
T ss_pred HHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence 99 8999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
|..++|+||++|+++|++++|.++|++| ..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999995 567999999999999999999999999999999999999999999999
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHH
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (608)
+|++.|+++.|.+++..+.+.|+. ||..++++|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|+
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~--~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFP--LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCC--CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999655 499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC-C
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-C 388 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 388 (608)
++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|. .
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~ 491 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK 491 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999976 6999999999999999999999999999999997 6
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC
Q 047146 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460 (608)
Q Consensus 389 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 460 (608)
|+..+|++++.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+ .|+.+
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 8999999999999999999999999999975 5675 56999999999999999999999999998 57753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5e-31 Score=296.96 Aligned_cols=482 Identities=12% Similarity=0.047 Sum_probs=249.4
Q ss_pred HHHHHHccCCchHHHh------hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCc
Q 047146 61 YDKIISLSRGNEIENL------SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133 (608)
Q Consensus 61 l~~~~~~~g~~~~A~~------~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 133 (608)
+...|...|+.++|.+ ...+.+...+..++..+.+.|+.+. +.+++.+... .+++..++..+...+...|++
T Consensus 403 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 403 LGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCH
Confidence 4444444444444444 2222223334444444445555554 5555554432 122334455555555555555
Q ss_pred HHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 047146 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213 (608)
Q Consensus 134 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 213 (608)
++|...+..+.+.. +.+...+..+...+...|++++|.+.|+.+.... +.+..++..+...+.+.|+.++|..+++++
T Consensus 482 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 482 AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554432 1223344445555555555555555555543322 224444555555555555555555555555
Q ss_pred HHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCCh
Q 047146 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNV 290 (608)
Q Consensus 214 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~ 290 (608)
...+ +.+...+..+...+...|+++.|..+++.+.+..+. +..++..+..+|.+.|++++|...|+++. +.+.
T Consensus 560 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 635 (899)
T TIGR02917 560 AELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD---SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA 635 (899)
T ss_pred HHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 4432 223334445555555555555555555555543221 44555555555555555555555555543 2234
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047146 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370 (608)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 370 (608)
..+..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.+ +.+...+..+...|
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLY 713 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHH
Confidence 445555555555555555555555555432 2234455555555555555555555555555443 23444445555555
Q ss_pred HhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHH
Q 047146 371 AKCGRIDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448 (608)
Q Consensus 371 ~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 448 (608)
.+.|++++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.++
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 55566666665555543 2333445555555555666666666665555531 22344555555555556666666666
Q ss_pred HHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
|+++.+. .+++...+..++..+.+.|+ .+|+..++++ ...| +..++..+...+...|++++|...++++++.+|.
T Consensus 793 ~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 793 YRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6665541 23345555555666666666 5566555555 3233 3444555555566666666666666666666666
Q ss_pred CCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 527 GDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
++.++..++.+|.+.|++++|.+++++|.
T Consensus 870 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 870 AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666666666666666654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-30 Score=293.37 Aligned_cols=535 Identities=11% Similarity=-0.003 Sum_probs=290.0
Q ss_pred cCCCCchhhhHHHHHHhhccc---------chhhccCChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHHHh-
Q 047146 8 ASGSRYNDINTFQQLSLLHQS---------PRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIENL- 76 (608)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A~~- 76 (608)
..|++.+++..|+..-..... ..+...++++.+...+..+++..+ .+..... +...+.+.|++++|..
T Consensus 273 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 273 QKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred HhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHH
Confidence 456677777777653222211 112234566777777777766543 2334444 7777788888887777
Q ss_pred -----hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCC
Q 047146 77 -----SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150 (608)
Q Consensus 77 -----~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 150 (608)
...+.+...|+.+...+.+.|++++ .+.|+++.+... .+...+..+...+...|++++|...+..+.+... .
T Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~ 429 (899)
T TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-E 429 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-c
Confidence 3344556677777777888888877 888877766431 1334555555566667777777777776665432 1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
.......++..|.+.|++++|..+++.+... .+.+..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+..
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 507 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLAR 507 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHH
Confidence 2234445555666666666666666665442 22345556666666666666666666666665432 223334455555
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChh
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFK 307 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 307 (608)
.+...|++++|.+.++.+.+..+. +..++..+...+.+.|+.++|..+|+++. +.+...+..++..+...|+++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPK---NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHH
Confidence 555666666666666665554322 44555555555555555555555555543 223334444555555555555
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhh--
Q 047146 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS-- 385 (608)
Q Consensus 308 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-- 385 (608)
+|..+++++.... +.+..++..+...+...|+++.|...+..+.+.. +.+...+..+..+|.+.|++++|..+|++
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554432 3334444455555555555555555555444432 22333444444555555555555555544
Q ss_pred --------------------------------cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047146 386 --------------------------------MKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430 (608)
Q Consensus 386 --------------------------------~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 430 (608)
+.. .+...+..+...+...|++++|...|+++... .|+..++.
T Consensus 663 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 740 (899)
T TIGR02917 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAI 740 (899)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHH
Confidence 432 23334444444555555555555555555442 33334444
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHA 508 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 508 (608)
.+..++.+.|++++|.+.+..+.+ ..+.+...+..+...|.+.|++++|.+.|+++ ...| +..++..+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 445555555555555555555544 12334455555555555555555555555555 2222 4445555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 509 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+ ++|...++++.+..|+++..+..++.+|...|++++|.++++++.+.
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5 55555555555555555555555566666666666666666665543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=5.5e-22 Score=224.29 Aligned_cols=415 Identities=10% Similarity=0.011 Sum_probs=307.8
Q ss_pred HhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCC-cchHHH------------H
Q 047146 127 CWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRD-LVSWTT------------L 193 (608)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~------------l 193 (608)
+...|++++|...++..++.. +.+...+..+...|.+.|++++|+..|++..+..+... ...|.. .
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 455678888888888877753 23566777777888888888888888877554333211 112221 1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcC
Q 047146 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273 (608)
Q Consensus 194 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 273 (608)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.|+.+++..+. +...+..+...|. .+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~---~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG---NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH-hc
Confidence 335567788888888888887653 224456666777788888888888888888876543 4556666666664 45
Q ss_pred ChHHHHHHHccCCCCC------------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCCh
Q 047146 274 NIPSARKVFDEMPVKN------------VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341 (608)
Q Consensus 274 ~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 341 (608)
+.++|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 6788888877765321 1234456667888999999999999998863 23455677788889999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCC----Ch---------hHHHHHHHHHHHcCChH
Q 047146 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR----DV---------YSYTAMIVGLAIHGKAW 408 (608)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~~~~~ 408 (608)
++|...++.+.+.. +.+...+..+...+...|+.++|...++.+... +. ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999988754 234444455556677889999999999988642 11 11234566788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 409 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
+|..+++. .+++...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++.+|...|++++|++.++..
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999872 2445567778888999999999999999999872 2336788999999999999999999999988
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 489 -PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG------AYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 489 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...| +...+..+..++...|++++|.++++++.+..|+++. .+..++.++...|++++|+..+++...
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455 4566777888899999999999999999988766543 566789999999999999999999863
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=6.7e-22 Score=223.58 Aligned_cols=514 Identities=12% Similarity=0.042 Sum_probs=280.0
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHHHh------hCCCCCcchH----------------H
Q 047146 31 LESSKSVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIENL------SLQNPQVYLY----------------N 87 (608)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A~~------~~~~~~~~~~----------------~ 87 (608)
..+-++.+.+++....+....+. ++.+.. .+.++...|+.++|.+ ...+.+...+ -
T Consensus 38 ~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 38 GEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred HHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHH
Confidence 34444566677777766655443 455556 8888999999999998 4444444333 2
Q ss_pred HHHHHHHcCCCccH-HHHHHHHHHCCCCCCce-eHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhc
Q 047146 88 FIIQCLSNANPLEA-IALYREMLIKGLLPNTY-TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC 165 (608)
Q Consensus 88 ~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 165 (608)
.....+...|++++ ++.|+.+.+.+ +|+.. ............|+.++|...++.+.+.. +.+...+..+...+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcc
Confidence 22346778899999 99999988653 23322 11111222334588999999999998864 23566788888999999
Q ss_pred CCHHHHHHHhcccCCCCCCC----------------C---cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH
Q 047146 166 GLIKAVHKLFHFRQHPQAQR----------------D---LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226 (608)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~----------------~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 226 (608)
|+.++|+..|+++....... + ...+...+..+-.....+.|...+.++......|+... .
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~ 273 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-R 273 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-H
Confidence 99999999998864421100 0 00011101111111111222222222222111111111 1
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC--CCh---hhHHH------
Q 047146 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--KNV---VSWNS------ 295 (608)
Q Consensus 227 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~------ 295 (608)
.....+...|++++|+..++.+++..+. +..++..+..+|.+.|++++|+..|++... |+. ..|..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 1122334455555555555555554322 444555555555555555555555554431 110 11111
Q ss_pred ------HHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHH----
Q 047146 296 ------MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA---- 365 (608)
Q Consensus 296 ------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 365 (608)
....+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.++.+.+... .+...+..
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 1223344555555555555555432 22233344444445555555555555555544321 12222233
Q ss_pred --------------------------------------HHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHc
Q 047146 366 --------------------------------------LVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTAMIVGLAIH 404 (608)
Q Consensus 366 --------------------------------------li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 404 (608)
+...+...|++++|++.|++..+ | +...+..+...|.+.
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33444455555555555555432 2 233444455555555
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh---------hHHHHHHHHHHh
Q 047146 405 GKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT---------EHYGCMVDLFGR 474 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~l~~~~~~ 474 (608)
|++++|...++++.+. .|+ ...+..+...+...++.++|...++.+... ...++. ..+..+...+..
T Consensus 509 G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 509 GQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 5555555555555542 232 223333333344455555555555544321 111111 112234556667
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 475 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
.|+.++|+++++.- .++...+..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|++.+++.
T Consensus 586 ~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 586 SGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777777777743 2345566677788889999999999999999999999999999999999999999999999987
Q ss_pred HhCC
Q 047146 555 KERK 558 (608)
Q Consensus 555 ~~~~ 558 (608)
.+..
T Consensus 664 l~~~ 667 (1157)
T PRK11447 664 PATA 667 (1157)
T ss_pred hccC
Confidence 6543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.3e-18 Score=188.10 Aligned_cols=516 Identities=9% Similarity=0.004 Sum_probs=323.0
Q ss_pred HHhhcccchhhccCChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHHHh------hCCCCCcchHHHHHHHHH
Q 047146 22 LSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIENL------SLQNPQVYLYNFIIQCLS 94 (608)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A~~------~~~~~~~~~~~~li~~~~ 94 (608)
...+..+.....-++...+...+.+.++..+.. +.+.. |...|...|+.++|+. ...+.|...+..+ ..+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i- 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI- 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh-
Confidence 444444444455577888888888888877765 55556 9999999999998888 4444444444443 322
Q ss_pred cCCCccH-HHHHHHHHHCCC------------------------------------CC--CceeHHHH-HHHHhccCCcH
Q 047146 95 NANPLEA-IALYREMLIKGL------------------------------------LP--NTYTLPYV-LKACWQSQSLR 134 (608)
Q Consensus 95 ~~~~~~~-~~~~~~m~~~g~------------------------------------~p--~~~t~~~l-l~~~~~~~~~~ 134 (608)
++... ..+|+++.+... .| +..+.... .+.|...++++
T Consensus 122 --~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred --ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 45555 677776655421 11 12222222 44555666666
Q ss_pred HHHHHHHHHHHhCcCCcHhHHHHHHHHHHh-cCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 047146 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAV-CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213 (608)
Q Consensus 135 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 213 (608)
++..++..+.+.+. .+......|-..|.. .++ +++..+++. ..+.++..+..+...|.+.|+.++|.++++++
T Consensus 200 ~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 200 QADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67777766666553 233334444455555 244 666666443 33356777888888899999999999988887
Q ss_pred HHCCCC-CCHhHHHHH------------------------------HHHhhccCCchHHHHHH-----------------
Q 047146 214 CQANLR-PDGMILVIV------------------------------LSACSKLGDLSLGIKIH----------------- 245 (608)
Q Consensus 214 ~~~~~~-p~~~t~~~l------------------------------l~~~~~~~~~~~a~~~~----------------- 245 (608)
...-.. |...++..+ +..+.+.++++.++++.
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 353 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSV 353 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcc
Confidence 543211 222222111 23333344444333332
Q ss_pred ------------HHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC--C----ChhhHHHHHHHHHhcCC--
Q 047146 246 ------------RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--K----NVVSWNSMIAGLTHRGQ-- 305 (608)
Q Consensus 246 ------------~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~-- 305 (608)
..+.+..++ +....--+.-...+.|+.++|.++|+..-. + +...-+-++..|.+.+.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~---~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPA---NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 222222111 344444455567788888888888877653 1 12233455666666655
Q ss_pred -hhHHHHH----------------------HHHHHh-CCC-CC--ChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 047146 306 -FKEALDI----------------------FRRMQG-LGL-KP--DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358 (608)
Q Consensus 306 -~~~A~~~----------------------~~~m~~-~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (608)
..++..+ +..... .+. ++ +...+..+..++.. ++.++|...+....... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 2233222 111111 112 22 34555555555554 77777888666665544 3
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSA 435 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~ 435 (608)
+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+. .|+.. .+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 433333445555678888888888886653 44455666677788888888888888888775 34432 33334444
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 513 (608)
....|++++|...+++..+ ..|+...+..+..++.+.|+.++|+..+++. ...| +...+..+..++...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5566888888888888866 4567778888888888888888888888887 5566 455667777788888888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
+..++++++..|+++..+..++.+|...|++++|+..+++..+...
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8888888888888888888888888888888888888888875543
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=3.6e-20 Score=177.96 Aligned_cols=443 Identities=13% Similarity=0.114 Sum_probs=326.9
Q ss_pred HHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCC
Q 047146 89 IIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167 (608)
Q Consensus 89 li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 167 (608)
+..-..+.|++.+ .+. ..|.-..-..+......+-..+.+..+.+...+--...++.. +.-..+|+.+.+.+-..|+
T Consensus 54 lah~~yq~gd~~~a~~h-~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKH-CNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHhccCHHHHHHH-HhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhch
Confidence 3334445666666 333 333222111122222222233444444444443333333321 2235678888888888888
Q ss_pred HHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH-HHHHhhccCCchHHHHHHH
Q 047146 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI-VLSACSKLGDLSLGIKIHR 246 (608)
Q Consensus 168 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~ 246 (608)
+++|+..++.+.+.. +..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+ +.......|.+++|...+-
T Consensus 132 ~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 132 LQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 888888888766532 34667788888888888888888888888766 4565544332 3333445788888888888
Q ss_pred HHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047146 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN---VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323 (608)
Q Consensus 247 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 323 (608)
+.++..+. =..+|+.|...+-..|++..|+..|++...-| ...|-.|...|-..+.+++|+..+.+.... .|
T Consensus 209 kAi~~qp~---fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 209 KAIETQPC---FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHhhCCc---eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 88776543 25677888888888888888888888876433 346777888888888888888888877764 44
Q ss_pred C-hHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 047146 324 D-DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIV 399 (608)
Q Consensus 324 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 399 (608)
+ ...+..+...|-..|.++.|+..++..+... +.-+..|+.|..++-..|++.+|++.+.+... ....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 4566667777778888888888888887764 33466788899999999999999999987763 34577888999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCC
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGL 477 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 477 (608)
+|...|..++|..+|....+ +.|.- ...+.|...|-.+|++++|+..++++.+ +.|+ ...|+.+...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999888 67765 4888999999999999999999999976 7786 6789999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHH
Q 047146 478 IREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 547 (608)
.+.|++.+.+. .+.|. ....+.|.+.|...|++.+|++.++.++++.|+.+.+|..++..+--..+|.+-
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 99999999887 77774 458888999999999999999999999999999999999888887766666553
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=7.8e-18 Score=182.21 Aligned_cols=470 Identities=11% Similarity=0.002 Sum_probs=318.9
Q ss_pred HccCCchHHHh------hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHH
Q 047146 66 SLSRGNEIENL------SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138 (608)
Q Consensus 66 ~~~g~~~~A~~------~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 138 (608)
...|++++|.. +..|.+..++..+...|.+.|+.++ +..+++..+. .|+...|..++..+ ++.++|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 44599998888 6667778899999999999999999 9999999875 45555555555333 88899999
Q ss_pred HHHHHHHhCcCCcHhHHHHHHHH--------HHhcCCHHHHHHHhcccCCCCCCCCcchHHHH-HHHHHhCCCchHHHHH
Q 047146 139 VHAYSMKTALLSNVYVFNTLMRL--------YAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL-IQAYVKMDYPTEAILS 209 (608)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~ 209 (608)
+++.+.+... .+..++..+... |.+.+...++++ .....+.|+....... .+.|.+.|++++|+++
T Consensus 130 ~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999998653 334455555554 766655555555 2222333445444444 8999999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhhc-cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC-
Q 047146 210 FFDMCQANLRPDGMILVIVLSACSK-LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV- 287 (608)
Q Consensus 210 ~~~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 287 (608)
+.++.+.+.. +..-...+-.++.. .++ +.+..+++...+ . +..+...+.+.|.+.|+.++|.++++++..
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk----~--d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF----T--DPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc----c--CHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 9999987533 34445566667766 466 777777553222 2 888899999999999999999999988751
Q ss_pred ----CChhhHH------------------------------HHHHHHH--------------------------------
Q 047146 288 ----KNVVSWN------------------------------SMIAGLT-------------------------------- 301 (608)
Q Consensus 288 ----~~~~~~~------------------------------~li~~~~-------------------------------- 301 (608)
|+..+|- .++..+.
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 356 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATR 356 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccC
Confidence 1110000 0111222
Q ss_pred -------------------------------hcCChhHHHHHHHHHHhC-C-CCCChHHHHHHHHHHhccCC---hHHHH
Q 047146 302 -------------------------------HRGQFKEALDIFRRMQGL-G-LKPDDFTLVCVLNSCANIGW---LELGK 345 (608)
Q Consensus 302 -------------------------------~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~~~---~~~a~ 345 (608)
+.|+.++|..+|+..... + -.++.....-++..+.+.+. ...+.
T Consensus 357 ~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 357 NKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred chhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 234444444444444331 0 11222222244555554443 11121
Q ss_pred H----------------------HHHHHHHc-CC-CC--chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CChhHHHHH
Q 047146 346 W----------------------VHTYLDKN-HI-NT--DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAM 397 (608)
Q Consensus 346 ~----------------------~~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l 397 (608)
. ....+.+. +. ++ +...+..+..++.. ++.++|...+.+... |+......+
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~l 515 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAV 515 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHH
Confidence 1 11111111 11 23 55566677777766 778788886665543 443332233
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 047146 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477 (608)
Q Consensus 398 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 477 (608)
...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++...+. . +++...+..+...+.+.|+
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCC
Confidence 44446899999999999987663 555556667777888899999999999998772 2 2233344444445556699
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 478 IREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+++|...+++. ...|+...|..+..++.+.|++++|+..+++++++.|+++..+..++.++...|++++|+..+++..+
T Consensus 592 ~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 592 PELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999988 67788888999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 047146 557 RK 558 (608)
Q Consensus 557 ~~ 558 (608)
..
T Consensus 672 l~ 673 (987)
T PRK09782 672 GL 673 (987)
T ss_pred hC
Confidence 43
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=4.6e-20 Score=177.24 Aligned_cols=417 Identities=12% Similarity=0.130 Sum_probs=332.4
Q ss_pred HhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHH
Q 047146 127 CWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206 (608)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 206 (608)
.-+.|++++|++--..+-... +.+....-.+-..+.+..+.+....--....+ ..+.-..+|..+.+.+-..|++++|
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHHHHhchHHHH
Confidence 446678888877544433322 11111122222445555555543332222111 1223456899999999999999999
Q ss_pred HHHHHHHHHCCCCC-CHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccC
Q 047146 207 ILSFFDMCQANLRP-DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285 (608)
Q Consensus 207 ~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 285 (608)
+.+|+.+.+. +| ....|..+..++...|+.+.|.+.|.+.++.++. ..-+.+.+....-..|++++|...|-+.
T Consensus 136 l~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~---l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 136 LALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD---LYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc---hhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 9999999884 45 4568999999999999999999999999988543 2344455666666789999999888776
Q ss_pred C--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchh
Q 047146 286 P--VK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD-FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361 (608)
Q Consensus 286 ~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (608)
. .| -.+.|+.|...+-.+|+...|+..|++.... .|+- ..|..+...|...+.++.|...+....... +....
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 5 33 3568999999999999999999999999874 5553 578888888889999999988887776543 33456
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 047146 362 IGNALVDMYAKCGRIDQAFGVFRSMKC--RD-VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACS 437 (608)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 437 (608)
++..+.-.|...|.++-|+..+++..+ |+ ...|+.|..++-..|+..+|...+.+... ..|+. ...+.|...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHH
Confidence 667777889999999999999998874 43 47899999999999999999999999988 56764 58899999999
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA-FVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~ 514 (608)
..|.+++|..+|....+ +.|. ....+.|...|-..|++++|+.-+++. .++|+. ..++.+...|...|+.+.|.
T Consensus 366 E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 99999999999999876 5565 567899999999999999999999998 889964 58999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 515 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+.+.+++..+|.-..+.+.|+.+|..+|++.+|+.-+++..+-.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999987543
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=3.3e-18 Score=181.94 Aligned_cols=419 Identities=13% Similarity=0.044 Sum_probs=291.2
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCC
Q 047146 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201 (608)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 201 (608)
..-..+...|+++.|...|...++. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 3444567778889999888888764 4677778888888888899999888888755532 235567788888888889
Q ss_pred CchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 047146 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281 (608)
Q Consensus 202 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 281 (608)
++++|+..|......+-. +......++..+.. ..+........+......|. +..+.. |...........-
T Consensus 209 ~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 209 KYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKPENLPS---VTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred CHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCC---HHHHHH-HHHHccCCcchhh
Confidence 999888888766443211 11111111111111 12233333333333222222 222222 2222222222221
Q ss_pred HccCCCCCh---hhHHHHHHH---HHhcCChhHHHHHHHHHHhCC-CCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047146 282 FDEMPVKNV---VSWNSMIAG---LTHRGQFKEALDIFRRMQGLG-LKP-DDFTLVCVLNSCANIGWLELGKWVHTYLDK 353 (608)
Q Consensus 282 ~~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (608)
+....+.+. ..+..+... ....+++++|++.|++..+.+ ..| +...+..+...+...|+++.|...++..+.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 221111111 111111111 123478999999999998865 234 345677777778889999999999999887
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 047146 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTF 429 (608)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~ 429 (608)
.. +.....+..+..++...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .|+ ...+
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~ 436 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSH 436 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHH
Confidence 64 33456777888899999999999999997653 45788999999999999999999999999984 564 4577
Q ss_pred HHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHH
Q 047146 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA-F-------VWGAL 500 (608)
Q Consensus 430 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l 500 (608)
..+..++.+.|++++|...|+...+ ..+.+...++.+..++...|++++|++.|++. .+.|+. . .++..
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 7888889999999999999999987 23445788999999999999999999999986 444421 1 11222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 501 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+..+...|++++|.+.++++++++|++...+..++.++.+.|++++|++.+++..+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 223345699999999999999999999889999999999999999999999998754
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.9e-19 Score=181.76 Aligned_cols=288 Identities=14% Similarity=0.164 Sum_probs=193.3
Q ss_pred hhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCC-C------hhhHHHHHHHHHhcC
Q 047146 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-N------VVSWNSMIAGLTHRG 304 (608)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~g 304 (608)
+...|+++.|...+..+.+.++. +..++..+...|...|++++|..+++.+... + ...+..+...|.+.|
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455555555555555554322 3445555555555555555555555544321 1 123444455555555
Q ss_pred ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHh
Q 047146 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384 (608)
Q Consensus 305 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 384 (608)
++++|..+|+++.+. . +.+..+++.++.+|.+.|++++|.+.++
T Consensus 122 ~~~~A~~~~~~~l~~-----------------------------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (389)
T PRK11788 122 LLDRAEELFLQLVDE-----------------------------------G-DFAEGALQQLLEIYQQEKDWQKAIDVAE 165 (389)
T ss_pred CHHHHHHHHHHHHcC-----------------------------------C-cchHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 555555555555443 1 2233444555555556666666666655
Q ss_pred hcCCC--C------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhh
Q 047146 385 SMKCR--D------VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455 (608)
Q Consensus 385 ~~~~~--~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 455 (608)
.+.+. + ...|..+...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 166 RLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55421 1 123455667778888888888888888874 344 457777778888899999999999888762
Q ss_pred cCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHH
Q 047146 456 YNLQPQ--TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532 (608)
Q Consensus 456 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 532 (608)
.|+ ...++.++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|...++++.+..|++. .+.
T Consensus 244 ---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~ 319 (389)
T PRK11788 244 ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFH 319 (389)
T ss_pred ---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHH
Confidence 333 456788889999999999999999987 5567777778888999999999999999999999999886 555
Q ss_pred HHHHHHHh---CCChHHHHHHHHHHHhCCCccCCc
Q 047146 533 LMTNIYSS---KNRWKEALKLRKKMKERKVKKTPG 564 (608)
Q Consensus 533 ~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 564 (608)
.+...+.. .|+.+++..++++|.+++++++|.
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55555543 568999999999999999998887
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.4e-18 Score=175.46 Aligned_cols=297 Identities=14% Similarity=0.132 Sum_probs=231.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCC-CchHHHHHHHHHHH
Q 047146 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS-PDVFIHNALIDMYL 270 (608)
Q Consensus 192 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-p~~~~~~~li~~~~ 270 (608)
.....+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+.+...... ....++..+...|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33455678899999999999998863 23456788899999999999999999999987532110 01356788999999
Q ss_pred hcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHH
Q 047146 271 KCGNIPSARKVFDEMPV---KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347 (608)
Q Consensus 271 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 347 (608)
+.|++++|..+|+++.. .+..+++.++..+.+.|++++|.+.++++.+.+..++....
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------- 179 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------- 179 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH-------------------
Confidence 99999999999999874 46678999999999999999999999999876422221100
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047146 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424 (608)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 424 (608)
...+..+...+.+.|++++|.+.|+++.+ | +...+..+...+.+.|++++|.++++++.+.+...
T Consensus 180 ------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 180 ------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred ------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 11224566677778888888888887653 2 35577778888999999999999999988753222
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 047146 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGA 503 (608)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 503 (608)
...++..+..++...|++++|.+.++++.+ ..|+...+..++..+.+.|++++|.++++++ ...|+..+++.++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 245678888899999999999999999877 3567667788999999999999999999877 667999999888877
Q ss_pred HHH---cCCHHHHHHHHHHHHhc
Q 047146 504 CKI---HAKVELAEIVMENLVRF 523 (608)
Q Consensus 504 ~~~---~~~~~~a~~~~~~~~~~ 523 (608)
+.. .|+.+++...++++.+.
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHH
Confidence 664 55888888888888753
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.4e-17 Score=176.53 Aligned_cols=328 Identities=11% Similarity=-0.021 Sum_probs=232.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHH
Q 047146 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269 (608)
Q Consensus 190 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~ 269 (608)
...++..+.+.|++++|+.+++........+ ...+..++.++...|+++.|...++.+.+..+. +...+..+...+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~---~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC---QPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHH
Confidence 3445666777788888888877776653332 334444445556678888888888887777544 566677777777
Q ss_pred HhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHH
Q 047146 270 LKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346 (608)
Q Consensus 270 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 346 (608)
...|++++|...|++.. +.+...+..+...+...|++++|...++++.... |+.......+..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888887777765 2345567777777888888888888887776543 322222222234667788888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHH
Q 047146 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWK----ALDIFSEMSQ 419 (608)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~ 419 (608)
.+..+.+....++......+..++...|++++|+..|++... .+...+..+...+...|++++ |+..|++..+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 777776654334444445556777888888888888887653 355677778888888888875 7888888887
Q ss_pred CCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 047146 420 VGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFV 496 (608)
Q Consensus 420 ~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 496 (608)
..|+ ...+..+...+...|++++|...++++.+ ..| +...+..+..+|.+.|++++|++.++++ ...|+...
T Consensus 279 --l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 279 --FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 4564 45788888888889999999998888876 244 4566777888888999999999888887 45665443
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 497 -WGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 497 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
+..+..++...|+.++|...++++.+..|++.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 33345677888999999999999998888764
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=3.2e-17 Score=177.56 Aligned_cols=396 Identities=8% Similarity=-0.009 Sum_probs=213.2
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCC
Q 047146 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201 (608)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 201 (608)
-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..... +.+...+..+...+...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 33444556666677776666665421 2334456666666677777777777776644322 223445556666666677
Q ss_pred CchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 047146 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281 (608)
Q Consensus 202 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 281 (608)
++++|+..+++..+.. +.+.. +..+..++...|+.++|...++.+.+..++ +..++..+..++...|..+.|++.
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~---~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ---TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHH
Confidence 7777777777766541 22333 555666666667777777777777666443 455555566666666666666666
Q ss_pred HccCCCCChh--------hHHHHHHHHHh-----cCCh---hHHHHHHHHHHhC-CCCCChH-HHHHHHHHHhccCChHH
Q 047146 282 FDEMPVKNVV--------SWNSMIAGLTH-----RGQF---KEALDIFRRMQGL-GLKPDDF-TLVCVLNSCANIGWLEL 343 (608)
Q Consensus 282 ~~~~~~~~~~--------~~~~li~~~~~-----~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~ll~~~~~~~~~~~ 343 (608)
++.... ++. ....++..... .+++ ++|++.++.+.+. ...|+.. .+..
T Consensus 173 l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~------------- 238 (765)
T PRK10049 173 IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR------------- 238 (765)
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH-------------
Confidence 666553 111 11111111111 1112 3444444444432 1112111 0000
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC---h-hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD---V-YSYTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
.....+.++...|++++|+..|+.+.+.+ + ..-..+..+|...|++++|+..|+++..
T Consensus 239 ------------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 239 ------------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred ------------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 00000122234456666666666555321 1 1111134456666666666666666554
Q ss_pred CCCCCC-----HHHHHHHHHHHhccccHHHHHHHHHHhHhhcC----------CCCC---hhHHHHHHHHHHhcCCHHHH
Q 047146 420 VGIEPD-----EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN----------LQPQ---TEHYGCMVDLFGRAGLIREA 481 (608)
Q Consensus 420 ~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A 481 (608)
. .|. ......+..++...|++++|.+.++.+.+... -.|+ ...+..+...+...|++++|
T Consensus 301 ~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 301 H--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred c--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 2 221 12334444455666666666666666554210 0122 12344556666677777777
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 482 LDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 482 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+++++++ ...| +...+..+...+...|++++|++.++++++..|+++..+..++..+.+.|++++|+.+++++.+..
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 7777766 3334 455666666667777777777777777777777777777777777777777777777777776543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.2e-16 Score=173.08 Aligned_cols=399 Identities=11% Similarity=0.021 Sum_probs=272.1
Q ss_pred HHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCC
Q 047146 89 IIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167 (608)
Q Consensus 89 li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 167 (608)
.+......|+.++ ++++.+..... ..+...+..+..++...|++++|..+++..++.. +.+...+..+...+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 3456678899999 99999987622 2344468888889999999999999999998863 2346677888899999999
Q ss_pred HHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCCchHHHHHHH
Q 047146 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD-GMILVIVLSACSKLGDLSLGIKIHR 246 (608)
Q Consensus 168 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~ 246 (608)
.++|...+++..+..+ .+.. |..+...+...|+.++|+..+++..+. .|+ ...+..+..++...+..+.|...++
T Consensus 99 ~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 99 YDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999776433 3555 888899999999999999999999885 444 4455667777788899999998887
Q ss_pred HHHHccCCCCCch------HHHHHHHHHHHh-----cCCh---HHHHHHHccCCC-----CChh-hH----HHHHHHHHh
Q 047146 247 YITDNHFNLSPDV------FIHNALIDMYLK-----CGNI---PSARKVFDEMPV-----KNVV-SW----NSMIAGLTH 302 (608)
Q Consensus 247 ~~~~~~~~~~p~~------~~~~~li~~~~~-----~g~~---~~A~~~~~~~~~-----~~~~-~~----~~li~~~~~ 302 (608)
.+... |+. .....++..+.. .+++ ++|++.++.+.. |+.. .+ ...+..+..
T Consensus 175 ~~~~~-----p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 175 DANLT-----PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred hCCCC-----HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 66541 121 122233333322 2234 667777776651 2211 11 111345567
Q ss_pred cCChhHHHHHHHHHHhCCCC-CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 047146 303 RGQFKEALDIFRRMQGLGLK-PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381 (608)
Q Consensus 303 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 381 (608)
.|++++|+..|+++.+.+.+ |+. ....+..++...|++++|...++.+.+........
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~-------------------- 308 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADL-------------------- 308 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC--------------------
Confidence 78999999999998876522 322 11123444555555555555555544322110000
Q ss_pred HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhccccHHHHHH
Q 047146 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-----------IEPDE---VTFVGVLSACSHAGLVEEGCK 447 (608)
Q Consensus 382 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~g~~~~a~~ 447 (608)
....+..+..++...|++++|..+++++.... -.|+. ..+..+...+...|+.++|++
T Consensus 309 --------~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 309 --------SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred --------ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 01123333444555555555555555555431 12342 244556677888899999999
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 047146 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEP 525 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 525 (608)
.++++.. ..+.+...+..++..+...|++++|++.+++. ...|+ ...+......+...|++++|+.+++++++..|
T Consensus 381 ~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 381 RARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999877 23446778889999999999999999999988 66674 55666777788899999999999999999999
Q ss_pred CCCc
Q 047146 526 EGDG 529 (608)
Q Consensus 526 ~~~~ 529 (608)
+++.
T Consensus 459 d~~~ 462 (765)
T PRK10049 459 QDPG 462 (765)
T ss_pred CCHH
Confidence 9973
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=3.4e-17 Score=173.51 Aligned_cols=326 Identities=11% Similarity=0.008 Sum_probs=269.7
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHH
Q 047146 224 ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGL 300 (608)
Q Consensus 224 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 300 (608)
-...++..+.+.|+.+.|..+++..+...+. +......++.++...|++++|...|+++. +.+...|..+...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4556677888999999999999999998655 56666777778888999999999999986 34566788899999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047146 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380 (608)
Q Consensus 301 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 380 (608)
.+.|++++|+..+++..+.. +.+...+..+...+...|+++.|...+..+......+.. .+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHH
Confidence 99999999999999998852 334567778888999999999999999988766543333 33333 3478899999999
Q ss_pred HHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHH----HHHHHHH
Q 047146 381 GVFRSMKCR----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEE----GCKHFLD 451 (608)
Q Consensus 381 ~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~----a~~~~~~ 451 (608)
..++.+.+. +...+..+...+...|++++|+..++++.+. .| +...+..+...+...|++++ |...+++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999987642 2334455677889999999999999999985 45 45678888899999999986 8999999
Q ss_pred hHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 452 MSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 452 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
+.+ ..| +...+..+...+.+.|++++|+..+++. ...| +...+..+..++...|++++|...++++.+..|+++
T Consensus 276 Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 276 ALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 877 345 5778999999999999999999999988 5556 456777788999999999999999999999999988
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
..+..++.++...|++++|...+++..+...+
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 77777889999999999999999999876554
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=1.8e-15 Score=160.64 Aligned_cols=427 Identities=10% Similarity=0.024 Sum_probs=310.4
Q ss_pred HHcCCCccH-HHHHHHHHHCCCCCCce-eHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHH
Q 047146 93 LSNANPLEA-IALYREMLIKGLLPNTY-TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170 (608)
Q Consensus 93 ~~~~~~~~~-~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 170 (608)
..++|+... ++.|++..+.. |+.. ....++..+...|+.++|...++..+. .-.........+...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 356788878 88888887653 4431 222777777788999999888888772 111222333334567888899999
Q ss_pred HHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHH
Q 047146 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250 (608)
Q Consensus 171 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 250 (608)
|.++|+++.+..+. ++..+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999987775443 4566667788888889999999999888764 45555554444444455666668899999988
Q ss_pred ccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC---CChhhH------HHHHHHH-----HhcCC---hhHHHHHH
Q 047146 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV---KNVVSW------NSMIAGL-----THRGQ---FKEALDIF 313 (608)
Q Consensus 251 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~------~~li~~~-----~~~g~---~~~A~~~~ 313 (608)
..++ +...+..++.++.+.|-...|.++..+-+. +...-| ..+++.- ....+ .+.|+.-+
T Consensus 198 ~~P~---n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 198 LAPT---SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred hCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 8654 677888888888999998888888877651 111111 0111100 01112 34566666
Q ss_pred HHHHhC-CCCCChH-----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC
Q 047146 314 RRMQGL-GLKPDDF-----TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387 (608)
Q Consensus 314 ~~m~~~-g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 387 (608)
+.+... +-.|... ...-.+-++...++...++..++.+...+.+....+-.++.++|...+++++|+.++.++.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 666542 2224322 2224456778899999999999999998877677788999999999999999999999875
Q ss_pred CC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH--H-HHHHHHHHHhccccHHH
Q 047146 388 CR---------DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI-----------EPDE--V-TFVGVLSACSHAGLVEE 444 (608)
Q Consensus 388 ~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~--~-~~~~ll~~~~~~g~~~~ 444 (608)
.+ +......|.-+|...+++++|..+++++.+.-. .||. . .+..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 32 233357788999999999999999999987311 2332 2 34455677889999999
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
|++.++++.. .-+-|......+.+.+...|.+.+|++.++.. .+.| +..+......++...+++++|..+.+.+.+
T Consensus 435 Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 435 AQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999976 34458889999999999999999999999877 5667 455677778888999999999999999999
Q ss_pred cCCCCCch
Q 047146 523 FEPEGDGA 530 (608)
Q Consensus 523 ~~p~~~~~ 530 (608)
..|+++.+
T Consensus 513 ~~Pe~~~~ 520 (822)
T PRK14574 513 RSPEDIPS 520 (822)
T ss_pred hCCCchhH
Confidence 99999843
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=2.6e-15 Score=159.84 Aligned_cols=422 Identities=11% Similarity=-0.045 Sum_probs=290.3
Q ss_pred HHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHh
Q 047146 86 YNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164 (608)
Q Consensus 86 ~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 164 (608)
+...-..+.+.|+++. +..|++..+. .|+...|..+-.++...|++++|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3345557788999999 9999998864 5777788888888999999999999999998854 2345678889999999
Q ss_pred cCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHH
Q 047146 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI 244 (608)
Q Consensus 165 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 244 (608)
.|++++|..-|........ .+......++.-+.. ..+........+.. +++...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 9999999987765322111 111111222221111 22233333332221 112222222222 2111111111111
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHH---HhcCChHHHHHHHccCCC------CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047146 245 HRYITDNHFNLSPDVFIHNALIDMY---LKCGNIPSARKVFDEMPV------KNVVSWNSMIAGLTHRGQFKEALDIFRR 315 (608)
Q Consensus 245 ~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 315 (608)
+....+.... ....+..+...+ ...+++++|.+.|+.... .+...|+.+...+...|++++|+..|++
T Consensus 280 ~~~~~~~~~~---~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 280 LEDSNELDEE---TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhcccccccc---cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111000 001111111111 234678899998887653 2345688888888899999999999999
Q ss_pred HHhCCCCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CCh
Q 047146 316 MQGLGLKPD-DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDV 391 (608)
Q Consensus 316 m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 391 (608)
..+. .|+ ...|..+...+...|+++.|...++.+.+.. +.+..++..+..+|...|++++|...|++..+ .+.
T Consensus 357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 8875 454 5577788888889999999999999887764 44577888899999999999999999998763 356
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh--------
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT-------- 462 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------- 462 (608)
..|..+...+.+.|++++|+..|++.... .|+ ...+..+...+...|++++|++.|+.... +.|+.
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~ 508 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVL 508 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHH
Confidence 77888888999999999999999999874 554 56888899999999999999999999876 23321
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
..++.....+...|++++|.+++++. .+.| +...+..+...+...|++++|...++++.++.+...
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 11222233344579999999999986 5566 445788899999999999999999999998877643
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=3.3e-15 Score=158.69 Aligned_cols=427 Identities=10% Similarity=0.020 Sum_probs=309.7
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcch-HHHH--HHH
Q 047146 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS-WTTL--IQA 196 (608)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~l--i~~ 196 (608)
|...|. ..+.|+++.|...+....+........++ .++..+...|+.++|+..+++.. .|+... +..+ ...
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~l 111 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARA 111 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHH
Confidence 333333 46889999999999999886532222345 88899999999999999999954 443333 3333 457
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChH
Q 047146 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276 (608)
Q Consensus 197 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 276 (608)
+...|++++|+++|+++.+... -+...+..++..+...++.++|.+.++.+.+.. |+...+..++..+...++..
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d----p~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD----PTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC----cchHHHHHHHHHHHhcchHH
Confidence 7888999999999999988642 235666777888899999999999999998773 24445555555555567776
Q ss_pred HHHHHHccCC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHH------HHHHHHHH-----hccCChH
Q 047146 277 SARKVFDEMP--VK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT------LVCVLNSC-----ANIGWLE 342 (608)
Q Consensus 277 ~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~ll~~~-----~~~~~~~ 342 (608)
+|++.++++. .| +...+..+..++.+.|-...|.++..+-... +.+...- ....++.- ....++.
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 7999999987 33 5667788889999999999998877654321 1111110 11111110 0112233
Q ss_pred H---HHHHHHHHHH-cCCCCc-hhH-HHH---HHHHhHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCChHH
Q 047146 343 L---GKWVHTYLDK-NHINTD-GFI-GNA---LVDMYAKCGRIDQAFGVFRSMKCR----DVYSYTAMIVGLAIHGKAWK 409 (608)
Q Consensus 343 ~---a~~~~~~~~~-~~~~~~-~~~-~~~---li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~ 409 (608)
. +..-++.+.. .+..|. ... ..+ .+-++.+.|+..++++.|+.+..+ ...+-.++..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 3 3334444443 122232 122 223 344677889999999999999843 23456678899999999999
Q ss_pred HHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcC----------CCCC---hhHHHHHHHH
Q 047146 410 ALDIFSEMSQVGI-----EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN----------LQPQ---TEHYGCMVDL 471 (608)
Q Consensus 410 A~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~ 471 (608)
|+.+++++..... .++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 9999999976431 22333457788899999999999999999987211 0122 2345567888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHH
Q 047146 472 FGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 549 (608)
+...|++.+|++.++++ ...| |......+...+...|.+.+|++.++.+..+.|++..+...++..+...|+|++|..
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999 5556 888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 047146 550 LRKKMKERK 558 (608)
Q Consensus 550 ~~~~m~~~~ 558 (608)
+.+...+..
T Consensus 506 ~~~~l~~~~ 514 (822)
T PRK14574 506 LTDDVISRS 514 (822)
T ss_pred HHHHHHhhC
Confidence 987775443
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.1e-15 Score=152.02 Aligned_cols=538 Identities=10% Similarity=0.025 Sum_probs=371.8
Q ss_pred cCCCCchhhhHHHH-HH---------hhcccchhhccCChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCC---chH
Q 047146 8 ASGSRYNDINTFQQ-LS---------LLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRG---NEI 73 (608)
Q Consensus 8 ~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~---~~~ 73 (608)
-+|++-.+..+|+. +. .++.+.++-.|+..+.+...+.+..+..+ .+..... |..+-....+ +..
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHH
Confidence 35678888888877 11 12223334445566677777777776654 1221111 2222222222 222
Q ss_pred HHh------hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCC--CCceeHHHHHHHHhccCCcHHHHHHHHHHH
Q 047146 74 ENL------SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLL--PNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144 (608)
Q Consensus 74 A~~------~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (608)
+.. ...+.|++.-|.|-+-|...|+++. +.+...+...-.. .-..+|-.+-+++-..|+++.|...|-...
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 222 4566788889999999999999999 9998888764311 123357788888999999999999998777
Q ss_pred HhCcCCcH--hHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCC----CchHHHHHHHHHHHCCC
Q 047146 145 KTALLSNV--YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD----YPTEAILSFFDMCQANL 218 (608)
Q Consensus 145 ~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~ 218 (608)
+.. ++. ..+-.|..+|.+.|+++.+...|+.+.... +.+..+.-.|...|...+ ..+.|..++.+..+.-
T Consensus 335 k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 335 KAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred ccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 654 444 345577899999999999999999866543 234555566666666654 3456666666655432
Q ss_pred CCCHhHHHHHHHHhhccCCchHHHHHHHHHH----HccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC-------
Q 047146 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYIT----DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV------- 287 (608)
Q Consensus 219 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 287 (608)
.-|...|..+...+-. ++...+..++..+. ..+-. +.+.+.|.+...+...|+++.|...|.....
T Consensus 411 ~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 3355566666655544 44444466665544 33323 3788899999999999999999999876541
Q ss_pred CCh------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCch
Q 047146 288 KNV------VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT-LVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360 (608)
Q Consensus 288 ~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (608)
+|. .+-..+...+-..++.+.|.+.|..+... .|.-.+ |..+.......+...+|...+..+.... ..++
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np 564 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNP 564 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCc
Confidence 222 12223455566677899999999999886 465543 3333333334577888888888877654 4455
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHH------------cCChHHHHHHHHHHHHCCCC
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMK-----CRDVYSYTAMIVGLAI------------HGKAWKALDIFSEMSQVGIE 423 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~~~~~~A~~~~~~m~~~g~~ 423 (608)
.++..+...|.+...+..|.+-|..+. .+|..+.-+|.+.|.+ .+..++|+++|.+.... .
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--d 642 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--D 642 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--C
Confidence 666667778988888888888666554 2455665556555542 34567899999998884 4
Q ss_pred C-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHH
Q 047146 424 P-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM----PLVPDAFVWG 498 (608)
Q Consensus 424 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~ 498 (608)
| |...-+.+.-.++..|++.+|..+|..+.+. ......+|-.+.++|..+|++..|++.|+.. .-+.+..+.+
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 4 6667888888899999999999999999984 2345567888999999999999999999987 2234788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-------------------CCChHHHHHHHHHHHhCCC
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS-------------------KNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~A~~~~~~m~~~~~ 559 (608)
.|.+++...|.+.+|.+.+..++...|.++..-..++-+..+ .+..++|.++|++|...+-
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999998765555544433 2457788889988876554
Q ss_pred c
Q 047146 560 K 560 (608)
Q Consensus 560 ~ 560 (608)
+
T Consensus 801 ~ 801 (1018)
T KOG2002|consen 801 K 801 (1018)
T ss_pred C
Confidence 4
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=9.9e-15 Score=148.43 Aligned_cols=516 Identities=12% Similarity=0.033 Sum_probs=352.3
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHHHh------hCCCCCcchHHHHHHHHHcCCCccH----HH
Q 047146 35 KSVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIENL------SLQNPQVYLYNFIIQCLSNANPLEA----IA 103 (608)
Q Consensus 35 ~~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A~~------~~~~~~~~~~~~li~~~~~~~~~~~----~~ 103 (608)
++...+..++..++...+..-+-+.. +...+.++|..+.|+. .+.+.++.++-.|--.-....+.+. +.
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ 257 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQ 257 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHH
Confidence 35667777777766655433333333 6667788888888877 4444333333322222222333333 33
Q ss_pred HHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCc--HhHHHHHHHHHHhcCCHHHHHHHhcccCCC
Q 047146 104 LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN--VYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181 (608)
Q Consensus 104 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 181 (608)
++...-... .-|+...+.|-.-+--.|+.+.+..+...++.....-. ...|--+.++|...|+++.|...|.+-.+.
T Consensus 258 ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 258 LLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 333332222 23566777788888888999999998888887642111 234667788899999999999999875543
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC----CchHHHHHHHHHHHccCCCCC
Q 047146 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG----DLSLGIKIHRYITDNHFNLSP 257 (608)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~p 257 (608)
.....+..+--+...+.+.|+.+.+...|+..... .+-+..|...+...|+..+ ..+.|..++....+..+.
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~--- 412 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV--- 412 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc---
Confidence 33222344556778899999999999999998774 3344567777777777664 456777777777776422
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccC--------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCh-
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEM--------PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL---GLKPDD- 325 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~- 325 (608)
|...|-.+..+|-...-+.. +.+|... ....+...|.+...+...|++.+|...|...... ...+|.
T Consensus 413 d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 77888888877766544333 4444332 2456677889999999999999999999887654 123333
Q ss_pred ----H-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHH
Q 047146 326 ----F-TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAM 397 (608)
Q Consensus 326 ----~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 397 (608)
. +--.+....-..++.+.|.+.|..+.+.. +.-+..|..+.-+-...+...+|...+.... ..++..|.-+
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence 1 22233444456779999999999988764 1112223333322223366778888888765 3577788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcc------------ccHHHHHHHHHHhHhhcCCCCChhH
Q 047146 398 IVGLAIHGKAWKALDIFSEMSQV-GIEPDEVTFVGVLSACSHA------------GLVEEGCKHFLDMSRVYNLQPQTEH 464 (608)
Q Consensus 398 i~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~------------g~~~~a~~~~~~~~~~~~~~p~~~~ 464 (608)
...+.....+..|.+-|...... ...+|......|.+.|... +..++|+++|..+.+ .-+.|...
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yA 648 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYA 648 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhh
Confidence 88888888888888877666543 2236777777777755432 457788888888876 23447777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCCCchHHHHHHHHHh
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF-E-PEGDGAYILMTNIYSS 540 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-p~~~~~~~~l~~~~~~ 540 (608)
-|.+.-.++..|++.+|..+|... ....+..+|..+...|...|++..|.+.|+...+. . .+++.+...|+.++.+
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 788889999999999999999988 23335678889999999999999999999998866 3 4566788999999999
Q ss_pred CCChHHHHHHHHHHHhCCC
Q 047146 541 KNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 541 ~g~~~~A~~~~~~m~~~~~ 559 (608)
.|++.+|.+.+.......+
T Consensus 729 ~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred hhhHHHHHHHHHHHHHhCC
Confidence 9999999999888765443
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=2.7e-14 Score=133.05 Aligned_cols=443 Identities=11% Similarity=0.112 Sum_probs=286.5
Q ss_pred HHHcCCCccH-HHHHHHHHHCCCCCCceeHHHH-HHHHhccCCcHHHHHHHHHHHHhCcCCc----HhHHHHHHHHHHhc
Q 047146 92 CLSNANPLEA-IALYREMLIKGLLPNTYTLPYV-LKACWQSQSLRVGQQVHAYSMKTALLSN----VYVFNTLMRLYAVC 165 (608)
Q Consensus 92 ~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~ 165 (608)
-|..+....+ +..|+-+.+...-||.-.+..- -..+.+.+.+..|...+...+..-...+ +...+.+--.+.+.
T Consensus 210 qy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 210 QYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred HhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 4445555555 7777777666666665543322 2235566677777777776665432111 22344444556677
Q ss_pred CCHHHHHHHhcccCCCCCCCCcch-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC------------HhHHHHHH---
Q 047146 166 GLIKAVHKLFHFRQHPQAQRDLVS-WTTLIQAYVKMDYPTEAILSFFDMCQANLRPD------------GMILVIVL--- 229 (608)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------------~~t~~~ll--- 229 (608)
|.+++|..-|+.+.+. .|+..+ +|.+| ++..-|+-++..+.|.+|......|| ....+..+
T Consensus 290 gqy~dainsfdh~m~~--~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEE--APNFIAALNLII-CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred ccchhhHhhHHHHHHh--CccHHhhhhhhh-hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 7888887777764432 244433 44444 34445677777777777765332222 22222211
Q ss_pred --HHhhccCCchHHHHHHHHHHH-ccCCCCCchH---------------------HHHHHHHHHHhcCChHHHHHHHccC
Q 047146 230 --SACSKLGDLSLGIKIHRYITD-NHFNLSPDVF---------------------IHNALIDMYLKCGNIPSARKVFDEM 285 (608)
Q Consensus 230 --~~~~~~~~~~~a~~~~~~~~~-~~~~~~p~~~---------------------~~~~li~~~~~~g~~~~A~~~~~~~ 285 (608)
+-.-+.+ -..|++..-...+ ..+-+.|+-. .--.-.--|.+.|+++.|.++++-+
T Consensus 367 ~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 367 HLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111111 1112221111111 0111111110 0011123477889999999988888
Q ss_pred CCCChhhHHH-----HHHHHHh-cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 047146 286 PVKNVVSWNS-----MIAGLTH-RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359 (608)
Q Consensus 286 ~~~~~~~~~~-----li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (608)
...|..+-++ -+--|.+ -.++..|...-+...... .-+......--......|++++|...+.+.....-...
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ 524 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT 524 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH
Confidence 7655443222 2222333 335666666665554432 22222222222333457899999999999988765554
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 436 (608)
...|| +.-.+-+.|++++|++.|-.+. ..+....-.+.+.|-...++.+|++++.+.... ++.|+..+..|...|
T Consensus 525 ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dly 602 (840)
T KOG2003|consen 525 EALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLY 602 (840)
T ss_pred HHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHh
Confidence 55554 3345678899999999997765 467788888889999999999999999887763 344677899999999
Q ss_pred hccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCHHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGAC-KIHAKVELAE 514 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~~~~~~a~ 514 (608)
-+.|+-.+|.+.+-+--+ -++-+.++...|...|....-+++|+.+|++. -++|+..-|..++..| .+.|++..|.
T Consensus 603 dqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999988776644 35558899999999999999999999999998 6789999999998665 6789999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 515 IVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 515 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
.+++...+..|.+..+...|+.++...|.
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999888875
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=3.1e-13 Score=125.32 Aligned_cols=324 Identities=17% Similarity=0.207 Sum_probs=205.0
Q ss_pred CcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhcc--CCcHHH-HHHHHHHHHhCcCCcHhHHHH
Q 047146 82 QVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQS--QSLRVG-QQVHAYSMKTALLSNVYVFNT 157 (608)
Q Consensus 82 ~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 157 (608)
.+++=|.++.... ++.... .-+|+.|+..|+..+...-..+++..+-. .++.-+ .+.|-.|...|- .+..+|
T Consensus 115 ~V~~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW-- 190 (625)
T ss_pred hhcchhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc--
Confidence 3445566665544 445555 77888888888777666666666543322 222222 122333333332 222333
Q ss_pred HHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCC
Q 047146 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237 (608)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 237 (608)
|.|.+.+ -+|+ ..+.+..+|..||.++++--..+.|.++|++-.....+.+..+|+.+|.+-.-
T Consensus 191 ------K~G~vAd--L~~E-----~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--- 254 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFE-----TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--- 254 (625)
T ss_pred ------ccccHHH--HHHh-----hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh---
Confidence 3354443 3333 34457789999999999999999999999999888889999999999887543
Q ss_pred chHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHH----HccCC----CCChhhHHHHHHHHHhcCChhH-
Q 047146 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV----FDEMP----VKNVVSWNSMIAGLTHRGQFKE- 308 (608)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~~~----~~~~~~~~~li~~~~~~g~~~~- 308 (608)
..++++..+|... .++||..++|+++.+..+.|+++.|.+. +.+|. +|...+|..+|..+++.++..+
T Consensus 255 -~~~K~Lv~EMisq--km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 255 -SVGKKLVAEMISQ--KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred -hccHHHHHHHHHh--hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 3347889999987 6677999999999999999988876543 33343 5777777777777777776543
Q ss_pred HHHHHHHHHhC--C--CC---C-ChHHHHHHHHHHhccCChHHHHHHHHHHHHcC----CCCc---hhHHHHHHHHhHhc
Q 047146 309 ALDIFRRMQGL--G--LK---P-DDFTLVCVLNSCANIGWLELGKWVHTYLDKNH----INTD---GFIGNALVDMYAKC 373 (608)
Q Consensus 309 A~~~~~~m~~~--g--~~---p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~ 373 (608)
|..++.+++.. | ++ | |..-|...+..|.+..+.+.|.+++..+.... +.++ ..-|..+..+.+..
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 44444444332 1 22 2 34556677777777777777777776654321 2222 12334455555666
Q ss_pred CCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047146 374 GRIDQAFGVFRSMKC----RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428 (608)
Q Consensus 374 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 428 (608)
...+.-...++.|.. |+..+-..++.+..-.|.++-.-+++.++...|..-+...
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 666666666666652 4555556666666666666666666666666654444433
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.6e-13 Score=125.76 Aligned_cols=405 Identities=13% Similarity=0.097 Sum_probs=193.1
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHH-HHH---HHHccCCchHHHh---------------------------hCCCCCcch
Q 047146 37 VGQLKQFHAFIIKTGSPQHQTQIL-YDK---IISLSRGNEIENL---------------------------SLQNPQVYL 85 (608)
Q Consensus 37 ~~~~~~~~~~~~~~g~~~~~~~~~-l~~---~~~~~g~~~~A~~---------------------------~~~~~~~~~ 85 (608)
+..+.-++.++...|.+-++.+.. |.+ .|-... .--|.. +..++...+
T Consensus 131 vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~-~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et 209 (625)
T KOG4422|consen 131 VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSN-VPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDET 209 (625)
T ss_pred cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCC-CcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchh
Confidence 445566788888888877766655 333 332221 111110 333344445
Q ss_pred HHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHh
Q 047146 86 YNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164 (608)
Q Consensus 86 ~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 164 (608)
+.+||.++++-...+. .++|.+-.....+.+..+||.+|.+-+-. ..+.+..+|+...+.||..++|+++.+.++
T Consensus 210 ~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 210 VSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 5555555555555555 55555555554555555555555543221 124555555555555555555555555555
Q ss_pred cCCHHHH----HHHhcccCCCCCCCCcchHHHHHHHHHhCCCchH-HHHHHHHHH----HCCCCC----CHhHHHHHHHH
Q 047146 165 CGLIKAV----HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE-AILSFFDMC----QANLRP----DGMILVIVLSA 231 (608)
Q Consensus 165 ~g~~~~A----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~----~~~~~p----~~~t~~~ll~~ 231 (608)
.|+++.| .+++.+|++-|++|...+|..+|..+.+.+++.+ +..++.+.. .+.++| |..-|...+..
T Consensus 286 fg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~I 365 (625)
T KOG4422|consen 286 FGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSI 365 (625)
T ss_pred hcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHH
Confidence 5555433 2334445555555555555555555555554432 222222221 111222 12234445555
Q ss_pred hhccCCchHHHHHHHHHHHcc-CCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHH
Q 047146 232 CSKLGDLSLGIKIHRYITDNH-FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (608)
|.+..+.+.|.+++....... ....|+. .....-|..+....++....+...
T Consensus 366 c~~l~d~~LA~~v~~ll~tg~N~~~ig~~---------------------------~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 366 CSSLRDLELAYQVHGLLKTGDNWKFIGPD---------------------------QHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhhcChH---------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544433211 0000000 001123445555666666677777
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 390 (608)
..|+.|.-.-+-|+..+...++++..-.+.++...+++..++..|.........-+...+++.. ..|+
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~ 486 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPL 486 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCC
Confidence 7777776666667777777777777777777777777777666553332222222222222211 0111
Q ss_pred hh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHH-
Q 047146 391 VY---SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG- 466 (608)
Q Consensus 391 ~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~- 466 (608)
.. -+.....-++. .-.+.....-.+|.+. .-.....+.++-.+.+.|..++|.+++..+.+..+--|-....+
T Consensus 487 tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA 563 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA 563 (625)
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence 11 11111111110 0011111122334433 22333445555556666777777776666654333333333333
Q ss_pred --HHHHHHHhcCCHHHHHHHHHhC
Q 047146 467 --CMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 467 --~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
-+++.-.+......|...++-|
T Consensus 564 m~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 564 MAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444445556666666666655
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=1.3e-11 Score=120.56 Aligned_cols=461 Identities=11% Similarity=0.021 Sum_probs=316.0
Q ss_pred CCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHH----HhCcCCcHhHHHHHHHHHHhcCCHHHH
Q 047146 97 NPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM----KTALLSNVYVFNTLMRLYAVCGLIKAV 171 (608)
Q Consensus 97 ~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A 171 (608)
..++. -.+++..++. ++-+...|.+..+.=-..|+++....+.++.+ ..|+..+...|-.=...+-+.|..-.+
T Consensus 420 etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 33444 4555555443 44455556555555555566666555554432 335555555555444555555555555
Q ss_pred HHHhcccCCCCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHH
Q 047146 172 HKLFHFRQHPQAQ--RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249 (608)
Q Consensus 172 ~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 249 (608)
..+......-+++ --..+|+.-...|.+.+.++-|..+|....+. .+-+...|.-....--..|..+....+++.+.
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5544443332322 12345666666677777777777777766653 22234455555555556677777777777777
Q ss_pred HccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH
Q 047146 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326 (608)
Q Consensus 250 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 326 (608)
..-+. ....|.....-+-..|++..|..++...- ..+...|-+-+..-..+.+++.|..+|.+.... .|+..
T Consensus 578 ~~~pk---ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeR 652 (913)
T KOG0495|consen 578 EQCPK---AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTER 652 (913)
T ss_pred HhCCc---chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcch
Confidence 65432 45566666666667788888877776654 234556777777777888888888888777664 46666
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHH
Q 047146 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTAMIVGLAI 403 (608)
Q Consensus 327 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 403 (608)
.|.--+..-.-.++.++|.++++..++.- +.-...|..+.+.+-+.++++.|.+.|..=.+ | .+..|-.+...--+
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 66555555556777888888887776652 34456677788888888888888888776543 3 45677777777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 483 (608)
.|....|..++++....+ +-|...|...+..-.+.|+.+.|..+..++.+ ..+.+...|..-|.+..+.++-..+..
T Consensus 732 ~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred hcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHH
Confidence 888888888888887763 33566888888888888999999888888887 466677888888888888888777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCC
Q 047146 484 LIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563 (608)
Q Consensus 484 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 563 (608)
.+++. ..|+.+.-++...+....+++.|..-|+++++.+|++..+|..+-..+.+.|.-++-.+++.+.....++ -
T Consensus 809 ALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~--h 884 (913)
T KOG0495|consen 809 ALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT--H 884 (913)
T ss_pred HHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--C
Confidence 77776 3477777788888899999999999999999999999999999999999999999999999988765543 3
Q ss_pred ceeEEEECC
Q 047146 564 GCSLVEVYG 572 (608)
Q Consensus 564 ~~~~~~~~~ 572 (608)
|..|..+..
T Consensus 885 G~~W~avSK 893 (913)
T KOG0495|consen 885 GELWQAVSK 893 (913)
T ss_pred CcHHHHHhh
Confidence 334544333
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=4.5e-12 Score=128.56 Aligned_cols=534 Identities=12% Similarity=0.107 Sum_probs=363.6
Q ss_pred HhhcccchhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHccCCchHHHh------hCCCCCcchHHHHHHHHHcC
Q 047146 23 SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL------SLQNPQVYLYNFIIQCLSNA 96 (608)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~~li~~~~~~ 96 (608)
.+++.+..+-+-++++.+..+...+++..+....-..+|..+|-..|+.+.+.. ...+.|...|-.+-.-..+.
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 355566666677899999999999999877555555559999999999999998 67788889999999999999
Q ss_pred CCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHH----HHHHHHhcCCHHHH
Q 047146 97 NPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT----LMRLYAVCGLIKAV 171 (608)
Q Consensus 97 ~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A 171 (608)
|.+.. .-.|.+.++.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999 99999998764 23444444445668889999999999999988654333333333 34556667777888
Q ss_pred HHHhcccCC-CCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh----------------------HH---
Q 047146 172 HKLFHFRQH-PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM----------------------IL--- 225 (608)
Q Consensus 172 ~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----------------------t~--- 225 (608)
.+.++.... ..-..+...+|.++..+.+...++.+......+.....++|.. .|
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 888876433 1223455668999999999999999999998887622222211 11
Q ss_pred -HHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC----CChhhHHHHHHHH
Q 047146 226 -VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV----KNVVSWNSMIAGL 300 (608)
Q Consensus 226 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~ 300 (608)
.-+.-++......+....+..........+.-+...+.-+.++|...|.+.+|+++|..+.. .+...|-.+..+|
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 12233455667777777777777777644433678899999999999999999999998873 3567899999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHhH
Q 047146 301 THRGQFKEALDIFRRMQGLGLKPDD-FTLVCVLNSCANIGWLELGKWVHTYLD--------KNHINTDGFIGNALVDMYA 371 (608)
Q Consensus 301 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~ 371 (608)
...|.+++|.+.|++.+.. .|+. -.-.+|-..+.+.|+.++|.+.+..+. ..+..|+..+.....+.|.
T Consensus 460 ~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 9999999999999999885 4543 345556667788999999999988843 3345566666666667777
Q ss_pred hcCCHHHHHHHHhhcCC----------------------------------------C----------------------
Q 047146 372 KCGRIDQAFGVFRSMKC----------------------------------------R---------------------- 389 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~----------------------------------------~---------------------- 389 (608)
..|+.++=..+-.+|.. +
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 77777654332222210 0
Q ss_pred ---Ch----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHH---HH-HHHHHHHhccccHHHHHHHHHHhHhhcC
Q 047146 390 ---DV----YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEV---TF-VGVLSACSHAGLVEEGCKHFLDMSRVYN 457 (608)
Q Consensus 390 ---~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~---~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 457 (608)
.. ..+.-++..+++.+++++|+.+...+.+....- +.. .+ ...+.++...+++..|...++.+...++
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 01 123445667888999999999988887653221 221 22 3345567788899999988888877533
Q ss_pred CCCC---hhHHHHHHHHHHh-----------------------------------cCCHHHHHHHHHhC-CCCCCHHHHH
Q 047146 458 LQPQ---TEHYGCMVDLFGR-----------------------------------AGLIREALDLIKSM-PLVPDAFVWG 498 (608)
Q Consensus 458 ~~p~---~~~~~~l~~~~~~-----------------------------------~g~~~~A~~~~~~~-~~~p~~~~~~ 498 (608)
+..+ ...|++..+.+.+ .+.+..|+..+-+. ...||....+
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~n 777 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLIN 777 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHH
Confidence 3322 2344533333222 23444454443333 2334433222
Q ss_pred HHH-HHH----------HHcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 499 ALL-GAC----------KIHAKVELAEIVMENLVRFEPE--GDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 499 ~l~-~~~----------~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
.++ .++ .++-.+-.+..++.+..++... .-.++..++.+|-..|-..-|..++++..+-.+
T Consensus 778 l~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 778 LCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 222 111 1122233455555555554332 345788899999999999999999999986543
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=2.4e-11 Score=118.83 Aligned_cols=441 Identities=10% Similarity=0.047 Sum_probs=349.9
Q ss_pred HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC
Q 047146 102 IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181 (608)
Q Consensus 102 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 181 (608)
.+++++..+. -|+.+ .+=++.....+.+.|+-++...++.- +.+...|. +|++..-++.|..+++...+
T Consensus 366 ~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe- 434 (913)
T KOG0495|consen 366 KRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKARE- 434 (913)
T ss_pred HHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHh-
Confidence 4455555543 24433 23445556667777888888887753 23333444 45666778888888887666
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHHHH----HHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCC
Q 047146 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFD----MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257 (608)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p 257 (608)
.++.+...|-+-...=-.+|+.+.+..++.+ +...|+..+...|..=...|-..|..-.+..+...++..|....-
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4556888888777777788999988888765 455789999999999999999999999999999999988876543
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 334 (608)
-..+|..-.+.|.+.+.++-|..+|.... ..+...|...+..--..|..++...+|++.... ++-....+....+.
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 46788999999999999999999998776 346677888877777789999999999999886 23344455555566
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHH
Q 047146 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALD 412 (608)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~ 412 (608)
.-..|++..|..++..+.+... .+..++-+-+..-.....++.|..+|.+.. .++...|.--+......++.++|++
T Consensus 594 ~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 6778999999999999988763 378888899999999999999999999776 4677888887777788899999999
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 047146 413 IFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--P 489 (608)
Q Consensus 413 ~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 489 (608)
++++..+ .-|+-. .|..+.+.+...++++.|...|..=.+ ..+..+..|-.|.+.=-+.|.+-+|..++++. .
T Consensus 673 llEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 9999888 477765 778888889999999999988876654 34456788999999999999999999999998 3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC------------------------------chHHHHHHHHH
Q 047146 490 LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD------------------------------GAYILMTNIYS 539 (608)
Q Consensus 490 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------------------------------~~~~~l~~~~~ 539 (608)
...+...|...|+.-.+.|+.+.|..++.++++..|.+. .+....+.++.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 333888999999999999999999999999988666653 45667778888
Q ss_pred hCCChHHHHHHHHHHHhCCC
Q 047146 540 SKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 540 ~~g~~~~A~~~~~~m~~~~~ 559 (608)
...++++|++.|.+..+.+.
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHHHHHHccCC
Confidence 88888899999888876554
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=9.9e-13 Score=133.26 Aligned_cols=329 Identities=15% Similarity=0.100 Sum_probs=215.0
Q ss_pred hccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHc---cCCCCChhhHHHHHHHHHhcCChhHH
Q 047146 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD---EMPVKNVVSWNSMIAGLTHRGQFKEA 309 (608)
Q Consensus 233 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A 309 (608)
...|++++|..++.++++..+. +...|.+|...|-..|+.+++...+- .+.+.|...|..+..-..+.|.+++|
T Consensus 150 farg~~eeA~~i~~EvIkqdp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3346666666666666665433 55566666666666666666655442 22344555666666666666666666
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHH----HHHHHHhHhcCCHHHHHHHHhh
Q 047146 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG----NALVDMYAKCGRIDQAFGVFRS 385 (608)
Q Consensus 310 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~ 385 (608)
.-.|.+.++.. +++-..+.--...|-+.|+...|..-+..+.....+.|..-. ...++.|...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666653 333333344445556666666666666666554433332222 2234555566666777777765
Q ss_pred cCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------------------------CCCHHHHHHHH
Q 047146 386 MKC-----RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI---------------------------EPDEVTFVGVL 433 (608)
Q Consensus 386 ~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---------------------------~p~~~~~~~ll 433 (608)
... -+...++.++..|.....++.|.....++..... .++... ..+.
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence 543 2345667777777777777777777776665211 222222 1122
Q ss_pred HHHhccccHHHHHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHHcC
Q 047146 434 SACSHAGLVEEGCKHFLDMSRVYNLQP--QTEHYGCMVDLFGRAGLIREALDLIKSM-P--LVPDAFVWGALLGACKIHA 508 (608)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--~~p~~~~~~~l~~~~~~~~ 508 (608)
-++.+....+....+...... ..+.| +...|.-+.++|...|++.+|+++|..+ . ...+...|.-+...+...|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 233344444444444444444 35444 5788999999999999999999999998 2 2236779999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeE
Q 047146 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567 (608)
Q Consensus 509 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 567 (608)
.+++|.+.+++++...|++..+...|+.+|.+.|+.++|.+.++.|..-+.+..++++|
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999999987444443444444
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=3.4e-15 Score=142.74 Aligned_cols=255 Identities=15% Similarity=0.165 Sum_probs=111.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHH-HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC-VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (608)
...+.+.|++++|++++++......+|+...|-. +...+...++.+.|.+.++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 3344455555555555543322221233322222 222333445555555555555544322 34445566666 67788
Q ss_pred HHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHh
Q 047146 376 IDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452 (608)
Q Consensus 376 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 452 (608)
+++|.+++...- .++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887653 3566777888888999999999999999987543 2346667888888899999999999999999
Q ss_pred HhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 453 SRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 453 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
.+ ..| +......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+..|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 87 356 5778889999999999999988888776 22346677889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 530 AYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
....+++++...|+.++|.+++++..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987643
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.8e-13 Score=134.31 Aligned_cols=161 Identities=13% Similarity=0.129 Sum_probs=78.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-hhHHHH
Q 047146 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGC 467 (608)
Q Consensus 390 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 467 (608)
.+.+|.++...|.-+++.+.|++.|++..+ +.| ...+|+.+..=+.....+|.|...|+.+.. +.|. -..|..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~rhYnAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPRHYNAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCchhhHHHHh
Confidence 344555555555555555555555555544 344 233444444444444555555555554432 2221 122333
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChH
Q 047146 468 MVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 545 (608)
|.-.|.+.++++.|+-.|+++ .+.| +.+..-.+...+.+.|+.|+|+++++++.-++|.++..-...+.++...++++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 444455555555555555554 4444 33333344444455555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 047146 546 EALKLRKKMK 555 (608)
Q Consensus 546 ~A~~~~~~m~ 555 (608)
+|+..+++++
T Consensus 575 eal~~LEeLk 584 (638)
T KOG1126|consen 575 EALQELEELK 584 (638)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=1.2e-11 Score=115.71 Aligned_cols=421 Identities=12% Similarity=0.095 Sum_probs=260.7
Q ss_pred CCcHHHHHHHHHHHHhCcCCcHhHH-HHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcch----HHHHHHHHHhCCCchH
Q 047146 131 QSLRVGQQVHAYSMKTALLSNVYVF-NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS----WTTLIQAYVKMDYPTE 205 (608)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~~ 205 (608)
....+|...++.+++...-|+.-.. -.+-+.+.+...+..|++.++......+..+..+ .|.+-..+.+.|.+++
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 3455555555555555554544322 1223445555666666666655433333222222 3333345667788888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCC----------CCCchHHHHHHHH-----HHH
Q 047146 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN----------LSPDVFIHNALID-----MYL 270 (608)
Q Consensus 206 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~~p~~~~~~~li~-----~~~ 270 (608)
|+..|+...+. .|+..+-..++-++...|+.++..+.|..++..... ..|+....+.-+. -.-
T Consensus 295 ainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 88888777664 477776666666666777888888888777764211 1123332222221 111
Q ss_pred hcC--ChHHHH----HHHccCCCCChh---hHH------------------HHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047146 271 KCG--NIPSAR----KVFDEMPVKNVV---SWN------------------SMIAGLTHRGQFKEALDIFRRMQGLGLKP 323 (608)
Q Consensus 271 ~~g--~~~~A~----~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p 323 (608)
+.+ +.++++ ++..-+..|+-. -|. .-...+.++|+++.|+++++-.....-+.
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~ 452 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT 452 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh
Confidence 111 111111 111111122211 010 01234678888888888888776543222
Q ss_pred ChHHHHH--HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHH--
Q 047146 324 DDFTLVC--VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV-- 399 (608)
Q Consensus 324 ~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-- 399 (608)
-...-+. .+..+....++..|.++-+...... .-+......-.+.-...|++++|.+.+.+....|...-.+|..
T Consensus 453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig 531 (840)
T KOG2003|consen 453 ASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG 531 (840)
T ss_pred hHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 2222222 2222233446666666665554332 1111111112223345689999999999998877765555543
Q ss_pred -HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCH
Q 047146 400 -GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478 (608)
Q Consensus 400 -~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (608)
.+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|++++..... -++.|+.+.+-|.+.|-+.|+-
T Consensus 532 lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 532 LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccch
Confidence 366789999999999988763 334566888888899999999999999988765 4556788999999999999999
Q ss_pred HHHHHHHH-hCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 479 REALDLIK-SMPLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 479 ~~A~~~~~-~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..|.+..- ....-| +..+..=|..-|....-++.++..|+++.-+.|+.......++.++.+.|++.+|..+++....
T Consensus 609 sqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 609 SQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred hhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99988644 344444 6666666777788888999999999999999998875555667777899999999999999865
Q ss_pred C
Q 047146 557 R 557 (608)
Q Consensus 557 ~ 557 (608)
+
T Consensus 689 k 689 (840)
T KOG2003|consen 689 K 689 (840)
T ss_pred h
Confidence 4
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1e-12 Score=129.18 Aligned_cols=192 Identities=17% Similarity=0.118 Sum_probs=104.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCR---DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHA 439 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~ 439 (608)
.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.... +.|... .|..+...|.++
T Consensus 425 ca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 425 CALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQ 502 (638)
T ss_pred HHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheecc
Confidence 44444444444444444444444322 223444444444445555555555555443 333332 444455556666
Q ss_pred ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 047146 440 GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIV 516 (608)
Q Consensus 440 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 516 (608)
++++.|+-.|+++.+ +.| +......+...+.+.|+.++|+++++++ ...| |+..--..+..+...+++++|.+.
T Consensus 503 ek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 503 EKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred chhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHH
Confidence 666666655555543 344 3344455555566666666666666665 2233 333333334445556677777777
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 517 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
++++.+.-|++..++..++.+|.+.|+.+.|+.-|.-+.+-+++
T Consensus 580 LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 580 LEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 77777777777777777777777777777777666666554443
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5e-11 Score=112.13 Aligned_cols=328 Identities=13% Similarity=0.098 Sum_probs=245.4
Q ss_pred CCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhH-HHH
Q 047146 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW-NSM 296 (608)
Q Consensus 218 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l 296 (608)
..-|..-+-...-.....|..+.|+..+...+.. -+..|.+-+....-..+.+.+..+....+..+...- -.+
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~------~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR------YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFL 233 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc------CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHH
Confidence 3445444444444566788888899888888765 334455555544445556655555544443322211 224
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHhHhcC
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI--NTDGFIGNALVDMYAKCG 374 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g 374 (608)
..++....+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+.+.+... -.|..+|..++-.--.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 456666778889998888888888766665555555566688899999999999998742 124556665543322222
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhH
Q 047146 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 453 (608)
++.---...-.+.+-.+.|...+.+-|.-.++.++|+..|++..+ +.|.. ..|+.+..-|....+...|++.++.++
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222212222233344567778888889999999999999999998 46654 477778888999999999999999998
Q ss_pred hhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 047146 454 RVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 454 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
+ +.| |-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..+..+...+..+..+
T Consensus 392 d---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 392 D---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred h---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 7 445 7889999999999999999999999998 6777 88999999999999999999999999999998888889
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 531 YILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
|..|+++|.+.++.++|...+++..+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999998875
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1e-11 Score=117.48 Aligned_cols=400 Identities=12% Similarity=0.074 Sum_probs=252.4
Q ss_pred HHhccCCcHHHHHHHHHHHHhCcCCc-HhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCch
Q 047146 126 ACWQSQSLRVGQQVHAYSMKTALLSN-VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204 (608)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 204 (608)
-|-+.+.+++|.+.+.+.+.. .|+ +..|+....+|...|+|+++.+--....+-.+ .-+-.+.--.+++-+.|+++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHHhhccHH
Confidence 356778888888888888874 466 77788888888888888887776555222111 11222333344555666666
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHH--------HHHHHH-ccCCCCCchHHHHHHHHHHHhcCCh
Q 047146 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI--------HRYITD-NHFNLSPDVFIHNALIDMYLKCGNI 275 (608)
Q Consensus 205 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~--------~~~~~~-~~~~~~p~~~~~~~li~~~~~~g~~ 275 (608)
+|+.=..- .+++..+....-.-.+.++ .++-.+ .+.+.-|+.....+....+..
T Consensus 201 eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~---- 263 (606)
T KOG0547|consen 201 EALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA---- 263 (606)
T ss_pred HHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc----
Confidence 66543222 2222222222222222222 222222 344444554433333222211
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHh--c---CChhHHHHHHHHHHhCC-CCC-----ChH----HHHHHHH--HHhcc
Q 047146 276 PSARKVFDEMPVKNVVSWNSMIAGLTH--R---GQFKEALDIFRRMQGLG-LKP-----DDF----TLVCVLN--SCANI 338 (608)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g-~~p-----~~~----t~~~ll~--~~~~~ 338 (608)
+-- ..+..+...+...+..++.. . ..+.+|...+.+-.... ..+ |.. .-..++. -+.-.
T Consensus 264 ~~~----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 264 DPK----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred ccc----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 000 00001111112222222111 1 12444444443321110 011 111 1111111 12345
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 047146 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~ 415 (608)
|+.-.+.+-++..++....++. .|--+..+|....+.++-.+.|+...+ .|..+|..-.+.+.-.+++++|..=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888877644433 255566788999999999999987763 467788888888888899999999999
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 047146 416 EMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD 493 (608)
Q Consensus 416 ~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 493 (608)
+.+. +.|+. ..|..+.-+..+.+.+++++..|++..+ .++..+++|+.....+...++++.|.+.|+.. .+.|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988 57754 4777777778889999999999999998 57777899999999999999999999999987 33333
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 494 ---------AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 494 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+.+-.+++..- -.+++..|.++++++.+++|....+|..|+.+-.+.|+.++|+++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444333 34899999999999999999999999999999999999999999999864
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=4.1e-10 Score=106.27 Aligned_cols=469 Identities=9% Similarity=0.031 Sum_probs=299.9
Q ss_pred CCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHH
Q 047146 78 LQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156 (608)
Q Consensus 78 ~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 156 (608)
...+++..|---+..=.++..... -.++++....=.+.|..=| --+-.=-..|++..|+++|+.-.. ..|+...|.
T Consensus 102 vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~ 178 (677)
T KOG1915|consen 102 VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIFERWME--WEPDEQAWL 178 (677)
T ss_pred cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHH
Confidence 345566666666666666666655 6666666553323232222 112222344667777777776655 457777777
Q ss_pred HHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-C-CCCCHhHHHHHHHHhhc
Q 047146 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA-N-LRPDGMILVIVLSACSK 234 (608)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~t~~~ll~~~~~ 234 (608)
+.|+.=.+-..++.|+.+++...- +.|++.+|---.+.=.++|+...+..+|+...+. | -.-+...|.+....-.+
T Consensus 179 sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 179 SFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766442 3466666666666666777777777777666542 1 01112223333333344
Q ss_pred cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHH---ccCC--------CCChhhHHHHHHHHHhc
Q 047146 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF---DEMP--------VKNVVSWNSMIAGLTHR 303 (608)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~---~~~~--------~~~~~~~~~li~~~~~~ 303 (608)
...++.|.-+|...+..-+.. .....|..+...=-+.|+.....+.. +++. .-|-.+|--.+..--..
T Consensus 257 qkE~ERar~iykyAld~~pk~-raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDHIPKG-RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV 335 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc
Confidence 556666777777666652221 12344544444444445533332221 2222 22556777777777788
Q ss_pred CChhHHHHHHHHHHhCCCCCChH-------HHHHHHHHH---hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh---
Q 047146 304 GQFKEALDIFRRMQGLGLKPDDF-------TLVCVLNSC---ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY--- 370 (608)
Q Consensus 304 g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--- 370 (608)
|+.+...++|++.+.. ++|-.. .|..+=-+| ....+++.+.++++..++ -++....++.-+=-+|
T Consensus 336 g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 336 GDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred CCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHH
Confidence 9999999999999876 455321 222222222 356889999999998887 3444555555443334
Q ss_pred -HhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHH
Q 047146 371 -AKCGRIDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGC 446 (608)
Q Consensus 371 -~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 446 (608)
.++.++..|.+++.... .|...+|...|..-.+.++++.+..++++..+ ..| |..+|......-...|+.+.|.
T Consensus 414 eIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHH
Confidence 57889999999998776 47788888889888999999999999999999 456 5568888888888899999999
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HcC-----------C
Q 047146 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACK-----IHA-----------K 509 (608)
Q Consensus 447 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~~-----------~ 509 (608)
.+|.-+++...+..-...|.+.|+.=...|.++.|..+++++ ...+-..+|-++...-. +.+ .
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~ 571 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDEN 571 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhH
Confidence 999999885444445667888888889999999999999998 44455567777664433 333 5
Q ss_pred HHHHHHHHHHHHhcCCC--CCchHH----HHHHHHHhCCChHHHHHHHHHHHh
Q 047146 510 VELAEIVMENLVRFEPE--GDGAYI----LMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~--~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...|..+|+.+.....+ +..-.. ..-+.-...|...+...+-.+|++
T Consensus 572 ~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 572 IKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 67889999988764222 122222 333334455666666666666653
No 41
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=3.5e-11 Score=121.61 Aligned_cols=430 Identities=10% Similarity=0.042 Sum_probs=241.1
Q ss_pred HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC
Q 047146 102 IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181 (608)
Q Consensus 102 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 181 (608)
-.++-.|...|+.||.+||..+|.-||..|+.+.|- +|..|.-..++.+..+++.++......++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 467788899999999999999999999999999998 9999988888888899999999988888877664
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHHHH-HH-------HCCCCCCHhHHHHHHHH--------------hhccCCch
Q 047146 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFD-MC-------QANLRPDGMILVIVLSA--------------CSKLGDLS 239 (608)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~-------~~~~~p~~~t~~~ll~~--------------~~~~~~~~ 239 (608)
.|...+|..|..+|.+.|+... ++..++ |. ..|+..-..-+-..+.+ ....|-++
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 4778899999999999998765 222222 22 12222111112111122 22223333
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHHHh-cCChHHHHHHHccCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047146 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLK-CGNIPSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317 (608)
Q Consensus 240 ~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 317 (608)
.+.+++..+...... .+... .++-... ...+++-..+..... .+++.++.+.+.+-..+|+.+.|..++.+|.
T Consensus 157 qllkll~~~Pvsa~~---~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWN---APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHhhCCccccc---chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 333333322111100 00000 0111111 111222222222222 2566666666666666666666666666666
Q ss_pred hCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc------------------------
Q 047146 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC------------------------ 373 (608)
Q Consensus 318 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------------------------ 373 (608)
+.|++.+..-|-.++-+ .++...++.+...|...|+.|+..++.-.+-.+...
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAA 308 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHH
Confidence 66666555555555443 555555555555666666655555554333333332
Q ss_pred ----------------------------------------------CCHHHHHHHHhhcCCC-------ChhHHHHHHHH
Q 047146 374 ----------------------------------------------GRIDQAFGVFRSMKCR-------DVYSYTAMIVG 400 (608)
Q Consensus 374 ----------------------------------------------g~~~~A~~~~~~~~~~-------~~~~~~~li~~ 400 (608)
|+-++.+.+-..+..| ++..|..++.-
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 2222222222222211 22223222222
Q ss_pred HHHcCC----------------------hHHHHHHHHHHHHCCCCCCHH----------------------------HHH
Q 047146 401 LAIHGK----------------------AWKALDIFSEMSQVGIEPDEV----------------------------TFV 430 (608)
Q Consensus 401 ~~~~~~----------------------~~~A~~~~~~m~~~g~~p~~~----------------------------~~~ 430 (608)
|.+.-+ ..+..++... ..||.. .-+
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 211100 0000000000 122211 111
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHH
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP-----LVPDAFVWGALLGACK 505 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~ 505 (608)
.++..|...-+..++...-+.... .-+ ...|..||+.+......+.|..+.++.. +.-|..-+..+.....
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 222222222222333222222221 111 2567888999999999999999888872 2335556777888888
Q ss_pred HcCCHHHHHHHHHHHHhc---CCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 506 IHAKVELAEIVMENLVRF---EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
+.+....+..+++.+.+. .|........+.+.....|+.+...++.+-+...|+.-
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 889999999999888764 23334566677788888999999999999988888766
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=1.5e-11 Score=123.15 Aligned_cols=287 Identities=14% Similarity=0.028 Sum_probs=181.6
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHH
Q 047146 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279 (608)
Q Consensus 200 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 279 (608)
.|+++.|.+.+....+..-.| ...|.....+....|+++.+.+.+..+.+...+. ...........+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~--~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADND--QLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHCCCHHHHH
Confidence 567777776665543321111 1223333334466777777777777776542221 1122223355667777777777
Q ss_pred HHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 047146 280 KVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356 (608)
Q Consensus 280 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (608)
..++++. +.+......+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 7776665 234556677777777888888888888888776543221 1111000
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 433 (608)
..+..++.......+.+...++++.+++ .++.....+...+...|+.++|.+++++..+. .|+.... ++
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 0112222323333455666666666653 46677777888888888888888888888773 4454222 23
Q ss_pred HHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 047146 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~ 512 (608)
.+....++.+++.+..+...+. .+-|...+.++...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 3334558888888888887762 3345667778888888888888888888887 677888888888888888888888
Q ss_pred HHHHHHHHHhc
Q 047146 513 AEIVMENLVRF 523 (608)
Q Consensus 513 a~~~~~~~~~~ 523 (608)
|.+++++...+
T Consensus 380 A~~~~~~~l~~ 390 (398)
T PRK10747 380 AAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHhh
Confidence 88888888765
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=5.3e-11 Score=119.90 Aligned_cols=289 Identities=14% Similarity=0.030 Sum_probs=150.7
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHH
Q 047146 199 KMDYPTEAILSFFDMCQANLRPDGM-ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277 (608)
Q Consensus 199 ~~g~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 277 (608)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+....+..++. ...+.......+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~--~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND--NILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC--chHHHHHHHHHHHHCCCHHH
Confidence 466777777776665443 23322 23333455556677777777776665542221 22233334556666666666
Q ss_pred HHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 047146 278 ARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354 (608)
Q Consensus 278 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (608)
|...++.+. +.+...+..+...+.+.|++++|.+.+..+.+.++. +...+..+-.
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~--------------------- 229 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ--------------------- 229 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH---------------------
Confidence 666666654 224445556666666666666666666666665432 2211111000
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF-- 429 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-- 429 (608)
..+..++..-......+...+.++..+. .+...+..+...+...|++++|.+++++..+. .||....
T Consensus 230 ------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~ 301 (409)
T TIGR00540 230 ------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISL 301 (409)
T ss_pred ------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchh
Confidence 0001111111122233445555555553 36777777788888888888888888888774 4444321
Q ss_pred HHH-HHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHH
Q 047146 430 VGV-LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS--M-PLVPDAFVWGALLGACK 505 (608)
Q Consensus 430 ~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~ 505 (608)
..+ .-.....++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 111 1112233555666666655554211112113444555666666666666666662 2 44555555555556666
Q ss_pred HcCCHHHHHHHHHHHH
Q 047146 506 IHAKVELAEIVMENLV 521 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~ 521 (608)
+.|+.++|.+++++..
T Consensus 382 ~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSL 397 (409)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666665543
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=9.1e-11 Score=117.49 Aligned_cols=275 Identities=11% Similarity=0.048 Sum_probs=191.8
Q ss_pred cCChHHHHHHHccCCCC--Chhh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH--HHHHHHhccCChHHHHH
Q 047146 272 CGNIPSARKVFDEMPVK--NVVS-WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV--CVLNSCANIGWLELGKW 346 (608)
Q Consensus 272 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 346 (608)
.|+++.|++.+...... ++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666654432 1222 222233335667777777777777653 44543322 22345566777777777
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC---h--------hHHHHHHHHHHHcCChHHHHHHHH
Q 047146 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD---V--------YSYTAMIVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~~~~~~A~~~~~ 415 (608)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.. . ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777776655 4455666777788888888888887777776421 1 133344444445556667777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 047146 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-D 493 (608)
Q Consensus 416 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 493 (608)
.+... .+.+......+..++...|+.++|.+++++..+ .+|+.... ++.+....++.+++++..+.. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76543 344677888899999999999999999998876 34555322 233334569999999999888 5566 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 494 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+..+.++...|...+++++|...|+++.+..|++. .+..++.++.+.|+.++|..++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56778888999999999999999999999999975 678999999999999999999998754
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=5.7e-10 Score=107.87 Aligned_cols=259 Identities=14% Similarity=0.014 Sum_probs=206.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047146 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370 (608)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 370 (608)
........-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+-..+++.- |..+.+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 334444555777899999999999998864 5666666666777778888777666666665543 55677788888888
Q ss_pred HhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHH
Q 047146 371 AKCGRIDQAFGVFRSMKCRD---VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGC 446 (608)
Q Consensus 371 ~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~ 446 (608)
.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. -|.. ..+.-+.--|.+.++++.|.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHH
Confidence 88899999999998766433 478999999999999999999999888763 3332 23444455688899999999
Q ss_pred HHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCC----CHHHHHHHHHHHHHcCCHHHHHHH
Q 047146 447 KHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-----PLVP----DAFVWGALLGACKIHAKVELAEIV 516 (608)
Q Consensus 447 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p----~~~~~~~l~~~~~~~~~~~~a~~~ 516 (608)
+.|..+.. +.| |+...+-+.-.....+.+.+|..+|+.. .+.+ =..+++.|..+|.+.+.+++|+..
T Consensus 401 ~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999854 555 6778888888888889999999999876 1112 234677788899999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 517 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+++++.+.|.+..++.+++-+|...|+++.|...|.+..-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998863
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.2e-09 Score=103.22 Aligned_cols=416 Identities=10% Similarity=0.049 Sum_probs=220.2
Q ss_pred ccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHH
Q 047146 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208 (608)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 208 (608)
..++...|+.+|+..+... ..+...|-..+.+=.++..+..|+.+++......|..|. .|-.-+..=-..|+...|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 3455666666666666543 244555666666666666777777777664443333232 23333333334566666666
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC-
Q 047146 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV- 287 (608)
Q Consensus 209 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 287 (608)
+|++..+ ..|+...|.+.++.-.+.+.++.|..+++..+-. .|++..|--....=-++|....|..+|+...+
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~----HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV----HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee----cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 6666655 4566666666666666666666666666665533 34666666666666666666666666665541
Q ss_pred -----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHH-------
Q 047146 288 -----KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD--DFTLVCVLNSCANIGWLELGKWVHTYLDK------- 353 (608)
Q Consensus 288 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~------- 353 (608)
.+...+++...--.++..++.|.-+|+-.+.. ++.+ ...|......--+-|+........-.-.+
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 11223333333333455566666666655554 1212 12233333222334444433333211110
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CCh---hHHHHHHHH--------HHHcCChHHHHHHHHHHHHC
Q 047146 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDV---YSYTAMIVG--------LAIHGKAWKALDIFSEMSQV 420 (608)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~~--------~~~~~~~~~A~~~~~~m~~~ 420 (608)
..-+.|-.++--.++.-...|+.+...++|++... |.. ..|...|-. -....+.+.+.++|+...+
T Consensus 316 ~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 316 SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 11133334444455555555666666666665542 111 122222111 1234566666666666665
Q ss_pred CCCC-CHHHHHHHHHH----HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 047146 421 GIEP-DEVTFVGVLSA----CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-D 493 (608)
Q Consensus 421 g~~p-~~~~~~~ll~~----~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 493 (608)
+-| ...||.-+=-. -.++.++..|.+++..++ |.-|-..++...|..=.+.+.++....++++. ...| |
T Consensus 395 -lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 395 -LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred -hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 333 33344433222 234556666666666553 45566666666666666666666666666665 4445 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD--GAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 494 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..+|......-...|+.+.|..+|+-++....-+. ..|-..++.-...|.++.|..+++++.++.
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 55666666666666666666666666654422211 245555666666666666666666666544
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=3.5e-11 Score=121.14 Aligned_cols=284 Identities=12% Similarity=0.057 Sum_probs=181.1
Q ss_pred HhcCCHHHHHHHhcccCCCCCCCCc-chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh--HHHHHHHHhhccCCch
Q 047146 163 AVCGLIKAVHKLFHFRQHPQAQRDL-VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM--ILVIVLSACSKLGDLS 239 (608)
Q Consensus 163 ~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~ 239 (608)
...|+++.|.+.+....+.. |+. ..+-....++.+.|+++.|.+.+.+..+.. |+.. ........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 45799999999998744432 332 233444577788999999999999987643 5543 3334577788899999
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHH----HHHHhcCChhHHHHH
Q 047146 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK---NVVSWNSMI----AGLTHRGQFKEALDI 312 (608)
Q Consensus 240 ~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li----~~~~~~g~~~~A~~~ 312 (608)
.|...++.+.+..+. +..+...+..+|...|++++|.+.+..+.+. +...+..+- .+....+..++..+.
T Consensus 171 ~Al~~l~~l~~~~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 171 AARHGVDKLLEMAPR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999998755 6788999999999999999999999888743 332232111 111222222222333
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CC
Q 047146 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RD 390 (608)
Q Consensus 313 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 390 (608)
+..+.+.. |+ ..+.++..+..+...+...|+.++|.+++++..+ ||
T Consensus 248 L~~~~~~~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd 295 (409)
T TIGR00540 248 LLNWWKNQ--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD 295 (409)
T ss_pred HHHHHHHC--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Confidence 33333321 10 0012344445555666666666666666665543 22
Q ss_pred hhH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhH
Q 047146 391 VYS---YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE---VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464 (608)
Q Consensus 391 ~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 464 (608)
... ...........++.+.+.+.+++..+. .|+. ....++...|.+.|++++|.+.|+.... ....|+...
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~ 372 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDAND 372 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHH
Confidence 221 111112223345667777777776663 5544 3455677778888888888888875333 345677777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
+..+...+.+.|+.++|.+++++.
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 778888888888888888877764
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.6e-09 Score=102.28 Aligned_cols=156 Identities=14% Similarity=0.059 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH
Q 047146 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAI 403 (608)
Q Consensus 327 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 403 (608)
|...+..-|+-.++.++|...|+...+.+ +.....|+.+.+-|....+...|..-++...+ .|-..|-.+.++|.-
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 33334444444444444444444444443 22233444445555555555555555554332 344455555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 482 (608)
.+.+.-|+-.|++..+ ++| |...|.+|..+|.+.++.++|++.|..+.. .-+.+...+..|.++|-+.++.++|.
T Consensus 411 m~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred hcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHhHHHHH
Confidence 5555555555555555 344 334555555555555555555555555544 11223344555555555555555555
Q ss_pred HHHHh
Q 047146 483 DLIKS 487 (608)
Q Consensus 483 ~~~~~ 487 (608)
..|+.
T Consensus 487 ~~yek 491 (559)
T KOG1155|consen 487 QYYEK 491 (559)
T ss_pred HHHHH
Confidence 44443
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=6.3e-13 Score=127.09 Aligned_cols=253 Identities=15% Similarity=0.100 Sum_probs=71.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH-HHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhc
Q 047146 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILV-IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272 (608)
Q Consensus 194 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 272 (608)
...+.+.|++++|++++++......+|+...|- .+...+...++.+.|.+.++.+...+.. +...+..++.. ...
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccc-ccc
Confidence 455556666666666664443332123333332 2333444566666666666666655422 34445555555 566
Q ss_pred CChHHHHHHHccCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChHHHHHHHHHHhccCChHHHHHHHH
Q 047146 273 GNIPSARKVFDEMP--VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHT 349 (608)
Q Consensus 273 g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 349 (608)
+++++|.+++...- .++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.+.|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666665442 2344455566666666677777776666655422 23344444445555555555555555555
Q ss_pred HHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-C
Q 047146 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-D 425 (608)
Q Consensus 350 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~ 425 (608)
.+.+.. +.+..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|++++|+.+|++.... .| |
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccc
Confidence 555543 2234445555556666666665554444432 234455556666666666666666666665553 33 4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhH
Q 047146 426 EVTFVGVLSACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 426 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 453 (608)
..+...+..++...|+.++|.++..++.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4455556666666666666666555543
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=6.4e-10 Score=103.33 Aligned_cols=287 Identities=14% Similarity=0.071 Sum_probs=192.2
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHH
Q 047146 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279 (608)
Q Consensus 200 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 279 (608)
.|+|.+|..+..+-.+.+-.| ...|..-..+.-..|+.+.+-+++.++.+...+ ++..+.-+........|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~--~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD--DTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC--chHHHHHHHHHHHHhCCCchhHH
Confidence 577777777777765554332 234555556666777777777777777766222 25666777777777778777776
Q ss_pred HHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 047146 280 KVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356 (608)
Q Consensus 280 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (608)
.-.+++. ..++........+|.+.|++.....++.+|.+.|+-.+...-..
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l-------------------------- 227 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL-------------------------- 227 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH--------------------------
Confidence 6655443 55677778888888888888888888888888876554432110
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 433 (608)
...+++.+++=....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+- ...
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~ 301 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL 301 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH
Confidence 11223334443333344444444555555 235666667777788888888888888888887777662 222
Q ss_pred HHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 047146 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~ 512 (608)
-.+.+.++...-++..+.-.+.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|.-+..++.+.|+.++
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 345666777666666666666444444 67778888888888888888888876 777888888888888888888888
Q ss_pred HHHHHHHHHhc
Q 047146 513 AEIVMENLVRF 523 (608)
Q Consensus 513 a~~~~~~~~~~ 523 (608)
|.+..++.+.+
T Consensus 380 A~~~r~e~L~~ 390 (400)
T COG3071 380 AEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHH
Confidence 88888777643
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=5e-10 Score=100.82 Aligned_cols=270 Identities=14% Similarity=0.147 Sum_probs=171.8
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCC--chHHHHHHHHHHHhcCChHH
Q 047146 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP--DVFIHNALIDMYLKCGNIPS 277 (608)
Q Consensus 200 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 277 (608)
+.++++|.++|-+|.+.. +-+..+-.++.+.|.+.|..+.|+++|..+.++. +.+- -......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-DLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 578999999999998742 2234456688888999999999999999998862 2210 12345567778888999999
Q ss_pred HHHHHccCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 047146 278 ARKVFDEMPVKN---VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354 (608)
Q Consensus 278 A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (608)
|+++|..+.+.+ ......|+..|.+..+|++|++.-+++...+-.+..+-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 999998887533 335667888899999999999999888876544433221
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD---VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 431 (608)
...|.-|...+....+.+.|...+.+..+.| +..--.+...+...|+++.|++.++...+.+..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1122334444445555666666665554322 22222334556666777777777777766543333446666
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 047146 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS-MPLVPDAFVWGALLGACK 505 (608)
Q Consensus 432 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~ 505 (608)
|..+|.+.|+.+++...+..+.+ ..+....-..+.+.-....-.+.|...+.+ +.-+|+...+..++....
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 66777777777777777766655 233333334444444444445555544433 355677777777776543
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.8e-10 Score=101.57 Aligned_cols=309 Identities=14% Similarity=0.107 Sum_probs=202.4
Q ss_pred cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC-CChh------hHHHHHHHHHhcCChh
Q 047146 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV-KNVV------SWNSMIAGLTHRGQFK 307 (608)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~ 307 (608)
.++.++|.+.|-+|.+.... +..+.-+|.+.|-+.|..|.|+++-..+.. ||.. ..-.|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 35677788888777775433 556667777888888888888887776653 3321 2334555566777777
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC
Q 047146 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387 (608)
Q Consensus 308 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 387 (608)
.|+.+|..+.+.| ..-......++..|-...+|++|+.+-..+.+.+-.+... -+.
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIA-------------------- 180 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIA-------------------- 180 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHH--------------------
Confidence 7777777776643 1222334444444444444444444444433332111110 111
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHH
Q 047146 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466 (608)
Q Consensus 388 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 466 (608)
..|.-+...+....+.+.|..++++..+. .|+.+ .-..+.......|+++.|.+.++.+.+. +..--..+..
T Consensus 181 ----qfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~ 253 (389)
T COG2956 181 ----QFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLE 253 (389)
T ss_pred ----HHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHH
Confidence 23455666677788999999999999885 55544 4445667789999999999999999883 3333467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH--hCCC
Q 047146 467 CMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS--SKNR 543 (608)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~ 543 (608)
.|..+|...|+.++....+.++ ...+....-..+...-....-.+.|...+.+-+...|+-...|..+-.-.. ..|.
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 9999999999999999998887 555666665666655556666778888888888888886544443333333 3466
Q ss_pred hHHHHHHHHHHHhCCCccCCceeEEEECCEEEEE
Q 047146 544 WKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577 (608)
Q Consensus 544 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 577 (608)
+.+...+++.|....++..|.+.-...+=..|+|
T Consensus 334 ~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 334 AKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred hhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 8999999999998888777765333333344444
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=1.7e-10 Score=107.39 Aligned_cols=198 Identities=13% Similarity=0.031 Sum_probs=164.7
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
....+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667788889999999999999987653 346778888899999999999999999998853 3345677788888
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 513 (608)
+...|++++|.+.+..+.+..........+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999873222334567778889999999999999999987 4444 566788888999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
...++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888889999999999999999998887643
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=2.5e-08 Score=100.33 Aligned_cols=403 Identities=13% Similarity=0.066 Sum_probs=261.1
Q ss_pred CcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh-HH
Q 047146 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM-IL 225 (608)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-t~ 225 (608)
.+..|..+|..|.-+..++|+++.+.+.|++... +.-.....|+.+-..|...|....|+.+++.-....-.|+.. .+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~-~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP-FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3567888999999999999999999999998543 233455679999999999999999999998876544335443 34
Q ss_pred HHHHHHhh-ccCCchHHHHHHHHHHHcc--CCCCCchHHHHHHHHHHHhc-----------CChHHHHHHHccCCC---C
Q 047146 226 VIVLSACS-KLGDLSLGIKIHRYITDNH--FNLSPDVFIHNALIDMYLKC-----------GNIPSARKVFDEMPV---K 288 (608)
Q Consensus 226 ~~ll~~~~-~~~~~~~a~~~~~~~~~~~--~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~---~ 288 (608)
...-+.|. +.+.++++...-.+++... ....-....+..+.-+|... ....++.+.+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444554 5677777777777666621 11111334444444444432 123345556665532 2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCchhHHHHHH
Q 047146 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-NHINTDGFIGNALV 367 (608)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li 367 (608)
|+.+-..+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++..|..+.+.... .|...... ..-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~--~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM--DGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc--hhhh
Confidence 33332333344677888999999999998876567778888888888888899999888776543 22111000 0111
Q ss_pred HHhHhcCCHHHHHHHHhhcC------------------------------C-CC-hhHHHHHHHHHHHcCChHHHHHHHH
Q 047146 368 DMYAKCGRIDQAFGVFRSMK------------------------------C-RD-VYSYTAMIVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~------------------------------~-~~-~~~~~~li~~~~~~~~~~~A~~~~~ 415 (608)
+.-...++.++|......+. + .+ +.++..+..-... +...+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc
Confidence 12222445555443332221 0 01 1122222111111 0000000000
Q ss_pred HHHHCCCCCCH--------HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047146 416 EMSQVGIEPDE--------VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487 (608)
Q Consensus 416 ~m~~~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (608)
|...-+.|.. ..|......+.+.+..++|...+.++.. ...-....|......+...|..++|.+.|..
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 1111122222 2344555668888999999888888765 2333667788888899999999999999888
Q ss_pred C-CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 488 M-PLVPD-AFVWGALLGACKIHAKVELAEI--VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 488 ~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
. .+.|+ +.+..++...+...|+...|.. ++..+.+.+|.++.+|..++.++.+.|+.+.|...|....+-
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7 67774 5688889999999999888888 999999999999999999999999999999999999988653
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=6.2e-09 Score=96.90 Aligned_cols=277 Identities=11% Similarity=0.052 Sum_probs=187.6
Q ss_pred cCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHH
Q 047146 272 CGNIPSARKVFDEMPV---KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348 (608)
Q Consensus 272 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 348 (608)
.|++.+|++...+-.+ .....|..-+.+-.+.|+.+.+-.++.+.-+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666655432 1223333444455556666666666666655322333344444445556666666666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047146 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-----------DVYSYTAMIVGLAIHGKAWKALDIFSEM 417 (608)
Q Consensus 349 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~A~~~~~~m 417 (608)
..+.+.+ +-++.+.....++|.+.|++.....++..+.+. ...+|+.+++-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6665555 334455566777777777777777777777643 1246777777776666666666677766
Q ss_pred HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHH
Q 047146 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAF 495 (608)
Q Consensus 418 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 495 (608)
-.. .+-+...-.+++.-+..+|+.++|.++.++..+ .+..|+.. .+ -.+.+-++.+.-++..+.. ...| ++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 544 455666777778889999999999999999988 46666621 11 2234556665555555444 2222 457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.+.+|...|.+.+.+.+|...|+.+.+..|+.. .|..++.++.+.|+..+|.+.+++..-
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 888999999999999999999999999998874 999999999999999999999998763
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=8e-09 Score=100.15 Aligned_cols=278 Identities=13% Similarity=0.049 Sum_probs=209.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPV---KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 334 (608)
+..+.....+-+...+++.+..++++.+.+ .+...+..-|.++...|+..+-..+=.+|.+. .+-...+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 666777777888888999999988888764 34456666777888888888888877788775 35556788888888
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 047146 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKAL 411 (608)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~ 411 (608)
|...|..++|++.+......... -...|-...+.|+-.|.-+.|+..+....+ .....+--+..-|.+.++..-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 88889999999999887654422 234567788888888998988887765432 11111222344577889999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhc-CCCC----ChhHHHHHHHHHHhcCCHHHHHHHH
Q 047146 412 DIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY-NLQP----QTEHYGCMVDLFGRAGLIREALDLI 485 (608)
Q Consensus 412 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (608)
++|.+... +-| |+..++-+.-.....+.+.+|..+|+.....- .+.+ ...+++.|..+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999887 566 45577777777777899999999999887411 1111 2346788999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 486 KSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 486 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
+.. ...| |..++.++.-.+...|+++.|...|.+++.+.|++..+-..|..+..
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 987 3334 88889999999999999999999999999999999766555554443
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=8.7e-12 Score=83.42 Aligned_cols=50 Identities=30% Similarity=0.478 Sum_probs=47.2
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc
Q 047146 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234 (608)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 234 (608)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.26 E-value=2.1e-09 Score=109.12 Aligned_cols=252 Identities=10% Similarity=0.070 Sum_probs=151.3
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCC
Q 047146 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288 (608)
Q Consensus 209 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 288 (608)
++..+...|+.|+..||..++.-|+..|+++.|- +|..|.-...++ +..+++.++......++.+.+. +|
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv--~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPV--REGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccc--cchhHHHHHhcccccccccCCC-------CC
Confidence 4556666777777777777777777777777777 777777665565 6677777777777777766555 56
Q ss_pred ChhhHHHHHHHHHhcCChhH---HHHHHHHHHh----CCCCCChHHHHHHHHH--------------HhccCChHHHHHH
Q 047146 289 NVVSWNSMIAGLTHRGQFKE---ALDIFRRMQG----LGLKPDDFTLVCVLNS--------------CANIGWLELGKWV 347 (608)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~----~g~~p~~~t~~~ll~~--------------~~~~~~~~~a~~~ 347 (608)
...+|..|..+|...||... +.+.+..... .|+.....-+-..+++ ....|-++.+.++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777543 2222222211 1222111111111111 1222333333333
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhH-hcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047146 348 HTYLDKNHINTDGFIGNALVDMYA-KCGRIDQAFGVFRSMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425 (608)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 425 (608)
+..+....... +... .++-.. -...+++-..+..... .++..+|.+.+..-...|+.+-|..++.+|.+.|+..+
T Consensus 162 l~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 162 LAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 32221111000 0000 111111 1122333333333333 37888888888888888999999999999999988888
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 047146 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477 (608)
Q Consensus 426 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 477 (608)
.+-|..++-+ .++...++.+++.|.. .|+.|+.+|+.-.+-.+.+.|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 8877777765 6777777777777777 6888988888777766666554
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.4e-07 Score=88.05 Aligned_cols=286 Identities=12% Similarity=0.022 Sum_probs=202.3
Q ss_pred cCCchHHHHHHHHHHHc-cCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhH---HHHHHHHHhcCChhHHH
Q 047146 235 LGDLSLGIKIHRYITDN-HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW---NSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 235 ~~~~~~a~~~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~ 310 (608)
.++-..+.+.+-.+... -+.. |+.....+..++...|+.++|+..|++...-|+.+. ....-.+.+.|+++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~--NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRC--NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCc--cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444444444333332 1233 888999999999999999999999998774443332 22333456788888888
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC--C
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK--C 388 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~ 388 (608)
.+...+.... +-+...|..-....-..++++.|..+-+..++.+. .+...+-.-..++...|+.++|.-.|+... .
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 8888776532 12223333333344456777778777777766542 233333334556778899999998888654 3
Q ss_pred -CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-cccHHHHHHHHHHhHhhcCCCCC-hhH
Q 047146 389 -RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL-SACSH-AGLVEEGCKHFLDMSRVYNLQPQ-TEH 464 (608)
Q Consensus 389 -~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~-~g~~~~a~~~~~~~~~~~~~~p~-~~~ 464 (608)
-+..+|.-++..|...|++.+|..+-+..... +..+..++..+. ..|.. ..--++|.+++++..+ +.|+ ...
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~A 440 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPA 440 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHH
Confidence 37789999999999999999998887776653 344556666653 33433 3345778888887754 5675 556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.+.+...+...|..++++.++++. ...||....+.|...+...+.+.+|...|..+++++|.+.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 678888899999999999999987 7788999999999999999999999999999999999985
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.2e-07 Score=89.74 Aligned_cols=433 Identities=14% Similarity=0.118 Sum_probs=254.2
Q ss_pred HHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHH--HHHHH--Hhc
Q 047146 91 QCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT--LMRLY--AVC 165 (608)
Q Consensus 91 ~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~--~~~ 165 (608)
.-+..++++++ +....++...+ +-+...+..-+-++.+.+.+++|..+.+ ..+. ..+++. +=.+| -+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHc
Confidence 44556677777 77777777654 3345566677777788888888874433 2221 112222 23444 467
Q ss_pred CCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCCchHHHHH
Q 047146 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP-DGMILVIVLSACSKLGDLSLGIKI 244 (608)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~ 244 (608)
+..++|...++. ..+-|..+...-...+.+.|++++|+++|+.+.+.+..- +...-..++.+-.. ..+
T Consensus 93 nk~Dealk~~~~----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~--- 161 (652)
T KOG2376|consen 93 NKLDEALKTLKG----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV--- 161 (652)
T ss_pred ccHHHHHHHHhc----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH---
Confidence 889999998884 222233355556677888999999999999997765321 11122222222111 111
Q ss_pred HHHHHHccCCCCC--chHHHHHHHHHHHhcCChHHHHHHHccCC--------CCCh-----h-----hHHHHHHHHHhcC
Q 047146 245 HRYITDNHFNLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMP--------VKNV-----V-----SWNSMIAGLTHRG 304 (608)
Q Consensus 245 ~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~-----~-----~~~~li~~~~~~g 304 (608)
...+.. +..| +-..+-.....+...|++.+|+++++... ..|. . .--.|..++...|
T Consensus 162 --~~~q~v-~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 162 --QLLQSV-PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred --HHHHhc-cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 112211 1111 12222233445677899999999998762 1111 1 2234556777889
Q ss_pred ChhHHHHHHHHHHhCCCCCChHHHHHHHH---HHhccCChHH--H------------HHHHHHHHHcCCCCchhHHHHHH
Q 047146 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLN---SCANIGWLEL--G------------KWVHTYLDKNHINTDGFIGNALV 367 (608)
Q Consensus 305 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~--a------------~~~~~~~~~~~~~~~~~~~~~li 367 (608)
+.++|..++...+... .+|......... +...-.++.. . ......+.... ......-+.++
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL 316 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALL 316 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999998875 455432222211 1211111111 0 11111111100 00111113444
Q ss_pred HHhHhcCCHHHHHHHHhhcCCCC-hhHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccH
Q 047146 368 DMYAKCGRIDQAFGVFRSMKCRD-VYSYTAMIVGLA--IHGKAWKALDIFSEMSQVGIEPDE--VTFVGVLSACSHAGLV 442 (608)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~ 442 (608)
.+|. +..+.+.++-..++... ...+.+++.... +...+.++.+++...-+. .|.. ......+......|++
T Consensus 317 ~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 317 ALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCH
Confidence 4443 55677777777776433 344555554432 233577788888877664 4443 4555566678889999
Q ss_pred HHHHHHHH--------HhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHH
Q 047146 443 EEGCKHFL--------DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-----PLVPDAF----VWGALLGACK 505 (608)
Q Consensus 443 ~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~ 505 (608)
+.|.+++. .+.+ .+. .+.+...++..+.+.++.+.|..++.+. ...+... +|.-+...-.
T Consensus 393 ~~A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 99999998 4433 233 3455667888888888877777777665 1122223 3333444456
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
++|+.++|..+++++.+.+|++..+...++.+|++.. .+.|..+=+.+
T Consensus 470 r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 7899999999999999999999999999999998774 46666654443
No 61
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.25 E-value=1e-06 Score=87.01 Aligned_cols=157 Identities=14% Similarity=0.067 Sum_probs=96.6
Q ss_pred hhHHH-HHHHHHccCCchHHHh-------hCCCC-CcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHH
Q 047146 56 QTQIL-YDKIISLSRGNEIENL-------SLQNP-QVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLK 125 (608)
Q Consensus 56 ~~~~~-l~~~~~~~g~~~~A~~-------~~~~~-~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~ 125 (608)
+.++. ..+..-+.|++..-+. .+|.- --..|...|......+-++. +.+|++..+- ++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 34444 6666666776655444 44422 23468888887777777777 8888887653 2233566677
Q ss_pred HHhccCCcHHHHHHHHHHHHhC------cCCcHhHHHHHHHHHHhcCCH---HHHHHHhcccCCCCCCCCcchHHHHHHH
Q 047146 126 ACWQSQSLRVGQQVHAYSMKTA------LLSNVYVFNTLMRLYAVCGLI---KAVHKLFHFRQHPQAQRDLVSWTTLIQA 196 (608)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~ 196 (608)
-++..+++++|.+.++..+... .+.+-..|.-+.+..++.-+. -....+++.+...-...-...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7778888888887777665332 233445566666665554332 2334445553332222233458888888
Q ss_pred HHhCCCchHHHHHHHHHHHC
Q 047146 197 YVKMDYPTEAILSFFDMCQA 216 (608)
Q Consensus 197 ~~~~g~~~~a~~~~~~m~~~ 216 (608)
|.+.|.+++|.++|++....
T Consensus 258 YIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 88888888888888876553
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=2.5e-11 Score=81.21 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047146 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438 (608)
Q Consensus 389 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 438 (608)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=3.9e-09 Score=105.31 Aligned_cols=230 Identities=18% Similarity=0.163 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-----C-CCCc-hhHHHHHHHHhHhcCCHHHHHHHHhhcCC-------C--
Q 047146 326 FTLVCVLNSCANIGWLELGKWVHTYLDKN-----H-INTD-GFIGNALVDMYAKCGRIDQAFGVFRSMKC-------R-- 389 (608)
Q Consensus 326 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 389 (608)
.+...+...|...|+++.|..++....+. | ..|. ....+.+...|...+++.+|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566777778888888888777766543 2 1122 22234466788888999888888887652 1
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCC-CHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcC--C
Q 047146 390 --DVYSYTAMIVGLAIHGKAWKALDIFSEMSQ-----VGIEP-DEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYN--L 458 (608)
Q Consensus 390 --~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 458 (608)
-..+++.|..+|.+.|++++|...+++..+ .|..+ ... .++.+...|...+.+++|..++....+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 235677788889999999988888777643 12222 222 566677789999999999999988776433 2
Q ss_pred CCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 047146 459 QPQ----TEHYGCMVDLFGRAGLIREALDLIKSM---------PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRF- 523 (608)
Q Consensus 459 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 523 (608)
.++ ..+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+++++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 367899999999999999999999887 1122 2457788889999999999999998877643
Q ss_pred ---CCCCC---chHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 524 ---EPEGD---GAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 524 ---~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+|+.+ .+|..|+.+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55554 578999999999999999999999886
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.1e-08 Score=97.27 Aligned_cols=341 Identities=15% Similarity=0.093 Sum_probs=214.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHH
Q 047146 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPD-GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270 (608)
Q Consensus 192 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 270 (608)
...+-|.++|++++|++.|.+..+ ..|| +.-|.....+|...|+++++.+--...++.++. -+..+..-..++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~---Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD---YVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH---HHHHHHHHHHHHH
Confidence 344567788899999999998877 4677 556777777788889998888887777776433 3455666667777
Q ss_pred hcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHH--------HHh-CC--CCCChHHHHHHHHHHhccC
Q 047146 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR--------MQG-LG--LKPDDFTLVCVLNSCANIG 339 (608)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~-~g--~~p~~~t~~~ll~~~~~~~ 339 (608)
..|++++|+.= +|-..+..++....-.--+.+++++ -.. .+ +.|+.....+....+...-
T Consensus 195 ~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 78888877631 2223333333332222222222222 111 11 3344433333333221100
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc-CCHHHHHHHHhhcC-------CC---Ch------hHHHHHHHHHH
Q 047146 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC-GRIDQAFGVFRSMK-------CR---DV------YSYTAMIVGLA 402 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~-------~~---~~------~~~~~li~~~~ 402 (608)
. ..+...+-..|...-..+=..+... ..+..|...+.+-. .. |. .+......-+.
T Consensus 266 ~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 K--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred c--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0 0000000011111111111111110 12333333332211 11 11 11111122244
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 047146 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREA 481 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 481 (608)
-.|+.-.|..-|+..+.....++. .|.-+...|....+.++.++.|.++.+ +.| +..+|..-..++.-.+++++|
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHH
Confidence 568888999999999885433333 276777789999999999999999876 445 577888888888888999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 482 LDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 482 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..-|++. .+.| +...|-.+.-+..+.++++++...|+...+..|..+.+|+..+.++...+++++|.+.++...+-.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999988 6777 556777777777788899999999999999999999999999999999999999999999987643
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=2.6e-07 Score=84.58 Aligned_cols=192 Identities=15% Similarity=0.122 Sum_probs=112.3
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK-------AWKALDIFSEMSQVGIEPDEV-TFVGVLSAC 436 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~ 436 (608)
.|+-.|.+.+++++|..+.+.+...++.-|-.-.-.++..|+ ..-|.+.|+-.-+.+...|.. .-.++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 455668889999999999888875444433332223333332 233555555444444443332 233444455
Q ss_pred hccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHH-HHHHHcCCHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP-LV-PDAFVWGALL-GACKIHAKVELA 513 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~-~~~~~~~~~~~a 513 (608)
.-..++++..-.+..+.. +-...|...+ .+..+++..|.+.+|+++|-.+. -. .|..+|.+++ +.|.+.++.+.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 555677777777777766 3333344333 46777888888888888887772 11 3556666555 556677777666
Q ss_pred HHHHHHHHhcC-CCCC-chHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 514 EIVMENLVRFE-PEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 514 ~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
..+ +++.+ |.+. ......++.|.+++.+=-|-+.|+.+...++.|
T Consensus 448 W~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 448 WDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 444 34433 3222 233455667777787777777777776555443
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=5.5e-09 Score=109.45 Aligned_cols=260 Identities=11% Similarity=0.010 Sum_probs=182.0
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCh-HHHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 047146 289 NVVSWNSMIAGLTH-----RGQFKEALDIFRRMQGLGLKPDD-FTLVCVLNSCA---------NIGWLELGKWVHTYLDK 353 (608)
Q Consensus 289 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 353 (608)
+...|...+.+-.. .+.+++|+.+|++..+. .|+. ..+..+..++. ..++++.|...++.+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44445555554321 13457888888888875 4554 34444433332 23457888888888887
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HH
Q 047146 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TF 429 (608)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~ 429 (608)
.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 44667777888889999999999999998763 4 4567888889999999999999999999984 56543 33
Q ss_pred HHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHH
Q 047146 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAF-VWGALLGACKI 506 (608)
Q Consensus 430 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~ 506 (608)
..++..+...|++++|...++++.+. ..| +...+..+..+|...|+.++|...++++ +..|+.. .++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34455566789999999999998762 234 4556777888999999999999999988 5555544 44455556666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
.| +.|...++++.+.....+.....+..+|.-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 4788878877765333222233377778888887777766 8887654
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=3.8e-09 Score=110.71 Aligned_cols=226 Identities=15% Similarity=-0.002 Sum_probs=169.8
Q ss_pred ChHHHHHHHHHHh-----ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH---------hcCCHHHHHHHHhhcCC-
Q 047146 324 DDFTLVCVLNSCA-----NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA---------KCGRIDQAFGVFRSMKC- 388 (608)
Q Consensus 324 ~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~- 388 (608)
+...|...+.+-. ..++.+.|...++...+... .+...+..+..+|. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 3344545555432 22456788889998887652 23445555555544 23458899999988764
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh-hH
Q 047146 389 --RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT-EH 464 (608)
Q Consensus 389 --~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~ 464 (608)
.+...|..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++++.+ +.|+. ..
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~ 408 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAA 408 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhh
Confidence 36678888888899999999999999999984 665 45788888899999999999999999977 45542 33
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-PL-VP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 541 (608)
+..++..+...|++++|++.+++. .. .| ++..+..+..++...|+.++|...++++....|.+......+...|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 334455677789999999999887 22 35 4455667778888999999999999998888888887888888888888
Q ss_pred CChHHHHHHHHHHHhC
Q 047146 542 NRWKEALKLRKKMKER 557 (608)
Q Consensus 542 g~~~~A~~~~~~m~~~ 557 (608)
| ++|...++++.+.
T Consensus 489 g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 489 S--ERALPTIREFLES 502 (553)
T ss_pred H--HHHHHHHHHHHHH
Confidence 8 4888888887653
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=1.2e-08 Score=94.81 Aligned_cols=200 Identities=12% Similarity=0.036 Sum_probs=113.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047146 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369 (608)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (608)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...+....+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 3456666777777777777777777776542 2223344444444444444444444444443332
Q ss_pred hHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHH
Q 047146 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKH 448 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 448 (608)
..+...+..+...+...|++++|...+++.......| ....+..+...+...|++++|...
T Consensus 96 ------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 96 ------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred ------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 1233445555555566666666666666665532222 223455555666667777777777
Q ss_pred HHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
+.+..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+..
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7766552 2223455666667777777777777776665 2222 44555556666667777777777766665543
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=5.2e-07 Score=89.27 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=79.5
Q ss_pred CCChhHH--HHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 459 QPQTEHY--GCMVDLFGRAGLIREALDLIKSM-PLVPDAF-VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 459 ~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
+|....| -.++..|-+.|+++.|..+++.. +-.|+.+ .|..-.+.+...|++++|...++++.+++-.|...-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4555444 45778888999999999999988 6567554 555556778889999999999999999988876555577
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 535 TNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
+.-..++++.++|.++....-+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 7777899999999999988876664
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1e-08 Score=98.29 Aligned_cols=211 Identities=16% Similarity=0.093 Sum_probs=141.4
Q ss_pred ChHHHHHHHHHHHHcC-CCC--chhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 047146 340 WLELGKWVHTYLDKNH-INT--DGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDI 413 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~ 413 (608)
..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555432 222 234566777788888999999888887653 3567888888889999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CC
Q 047146 414 FSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PL 490 (608)
Q Consensus 414 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 490 (608)
|++..+ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999887 5665 45777778888888999999999888876 3454322222223344567889998888664 22
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 491 VPDAFVWGALLGACKIHAKVELAEIVMENLV-------RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 491 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
.|+...| . ......|+...+ +.++.+. ++.|..+.+|..++.+|.+.|++++|+..|++..+.++
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332222 1 222334554433 2334333 44556667899999999999999999999998876553
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=2.7e-06 Score=84.41 Aligned_cols=463 Identities=14% Similarity=0.095 Sum_probs=284.1
Q ss_pred CCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHH
Q 047146 80 NPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158 (608)
Q Consensus 80 ~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 158 (608)
+.....|..++.+|- .+++.. +++.+...+. ..-...|....--.+...|+.++|.......++..+ .+.+.|..+
T Consensus 5 ~KE~~lF~~~lk~yE-~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~ 81 (700)
T KOG1156|consen 5 PKENALFRRALKCYE-TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVL 81 (700)
T ss_pred hHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHH
Confidence 334455666777664 456666 8888877763 222223333332235567888999888777666443 345567777
Q ss_pred HHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCC
Q 047146 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP-DGMILVIVLSACSKLGD 237 (608)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~ 237 (608)
--.+-...++++|...|....... +.|...|.-+.-.-++.|+++...+.-.+..+. .| ....|..+..+..-.|+
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHH
Confidence 666667788999999998855422 345566766666667778888888877777664 33 34567778888888999
Q ss_pred chHHHHHHHHHHHccCCCCCchHHHHHHH------HHHHhcCChHHHHHHHccCCCC--Chh-hHHHHHHHHHhcCChhH
Q 047146 238 LSLGIKIHRYITDNHFNLSPDVFIHNALI------DMYLKCGNIPSARKVFDEMPVK--NVV-SWNSMIAGLTHRGQFKE 308 (608)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~ 308 (608)
...|..+.++..+... ..|+...+.-.. ....+.|..+.|.+.+...... |-. .-.+....+.+.++.++
T Consensus 159 y~~A~~il~ef~~t~~-~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQN-TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHh
Confidence 9999999999988753 234555544332 3445678888888887766532 222 22345566788999999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHh-ccCChHHHH-HHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhc
Q 047146 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCA-NIGWLELGK-WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386 (608)
Q Consensus 309 A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 386 (608)
|..++..++.. .||...|.-.+..+. ...+..++. .++....+.-....... ..=+.......-.+..-+++..+
T Consensus 238 A~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~-Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 238 AVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR-RLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred HHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch-hccHHHhCcchhHHHHHHHHHHH
Confidence 99999999986 588777766665554 233333333 45554433211111000 00001111111122233333333
Q ss_pred CCC-ChhHHHHHHHHHHHcCChHHHHHHHHHH----HHCC----------CCCCHH--HHHHHHHHHhccccHHHHHHHH
Q 047146 387 KCR-DVYSYTAMIVGLAIHGKAWKALDIFSEM----SQVG----------IEPDEV--TFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 387 ~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m----~~~g----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
.+. -+.++..+.+.|-.....+-..++.-.+ ...| -+|... |+..+...+-+.|+++.|..++
T Consensus 315 l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 315 LSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred hhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 322 2334444444443322222111111111 1111 144543 5555677788999999999999
Q ss_pred HHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 450 LDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSM-PL-VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 450 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
+.+.. ..|+ ++.|..-.+.+...|.+++|..++++. .. .||...-.--..-..+.+..++|..++.+..+.+-+
T Consensus 395 d~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 395 DLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG 471 (700)
T ss_pred HHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc
Confidence 99876 3565 567777789999999999999999988 32 345554445556667889999999999988876542
Q ss_pred CC-------chHHHH--HHHHHhCCChHHHHHHHHHHH
Q 047146 527 GD-------GAYILM--TNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 527 ~~-------~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 555 (608)
-. -.|..+ +.+|.++|++.+|++=|..+.
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 11 123333 677889988888887666654
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=8.7e-07 Score=89.52 Aligned_cols=413 Identities=14% Similarity=0.052 Sum_probs=265.4
Q ss_pred HHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCC
Q 047146 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ 184 (608)
Q Consensus 105 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (608)
+.++....+.-|...|..+.-++...|+++.+-+.|++.....+ -....|+.+-..|.-+|.-..|..+++........
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 33444445666788888888899999999999999998876443 45668888888999999999999999875443333
Q ss_pred CCcchHHHHH-HHHH-hCCCchHHHHHHHHHHHC--CC--CCCHhHHHHHHHHhhcc----C-------CchHHHHHHHH
Q 047146 185 RDLVSWTTLI-QAYV-KMDYPTEAILSFFDMCQA--NL--RPDGMILVIVLSACSKL----G-------DLSLGIKIHRY 247 (608)
Q Consensus 185 ~~~~~~~~li-~~~~-~~g~~~~a~~~~~~m~~~--~~--~p~~~t~~~ll~~~~~~----~-------~~~~a~~~~~~ 247 (608)
|+..+--.++ ..|. +.+..++++++-.+.... +. ......|..+.-+|... . ...++.+.++.
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 4434333333 3333 346677777776665541 11 11223333333333221 1 23567778888
Q ss_pred HHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047146 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323 (608)
Q Consensus 248 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 323 (608)
.++.+.. |+.+.-.+.--|+..++++.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+...+. .|
T Consensus 470 av~~d~~---dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~ 544 (799)
T KOG4162|consen 470 AVQFDPT---DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FG 544 (799)
T ss_pred HHhcCCC---CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hh
Confidence 8887644 33333344445777889999988877654 457789999999999999999999999877654 11
Q ss_pred C-hHHHHHHHHHHhccCChHHHHHHHHHHH---------------------HcC-------CCCchhHHHHHHHHhH---
Q 047146 324 D-DFTLVCVLNSCANIGWLELGKWVHTYLD---------------------KNH-------INTDGFIGNALVDMYA--- 371 (608)
Q Consensus 324 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~---------------------~~~-------~~~~~~~~~~li~~~~--- 371 (608)
+ ..-...-+..-...++.+.+......+. +.| ....+.++..+.....
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 1 0000000111111222222221111110 111 0111222222222111
Q ss_pred hcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHH
Q 047146 372 KCGRIDQAFGVFRSMKCRD------VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEE 444 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 444 (608)
+.-..+.....+...+.|+ ...|......+...++.++|...+.+... +.| ....|......+...|..++
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 1111111112222222233 23566677788899999999988888877 445 44577777778888999999
Q ss_pred HHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047146 445 GCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALD--LIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMEN 519 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 519 (608)
|.+.|..... +.|+ +...+++..++.+.|+..-|.. ++..+ .+.| +...|-.+...+.+.|+.+.|.+.|+.
T Consensus 703 A~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 703 AKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 9999998865 6774 6788999999999998887777 77777 6667 788999999999999999999999999
Q ss_pred HHhcCCCCC
Q 047146 520 LVRFEPEGD 528 (608)
Q Consensus 520 ~~~~~p~~~ 528 (608)
+.++.+.+|
T Consensus 780 a~qLe~S~P 788 (799)
T KOG4162|consen 780 ALQLEESNP 788 (799)
T ss_pred HHhhccCCC
Confidence 999988776
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=5.7e-09 Score=94.13 Aligned_cols=231 Identities=14% Similarity=0.049 Sum_probs=132.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047146 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373 (608)
Q Consensus 294 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 373 (608)
+.|.++|.+.|.+.+|...|+.-.+. .|-..||..+-++|.+..+...|..++..-.+. ++.++.......+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777888888888888888777665 444555655555555555555555555444332 122333333344444455
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 047146 374 GRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450 (608)
Q Consensus 374 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 450 (608)
++.++|.++++...+ .++.....+..+|.-.++++-|+.+++++.+.|+. +...|+.+.-+|...++++-+...|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555554432 23333333444455555555555555555555432 34445555555555555555554444
Q ss_pred HhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 047146 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 451 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
+.... --.|+ .-..+|-.+.......||+..|.+.|+-++..+|++...
T Consensus 383 RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 44331 11111 123355555555666778888888888888888888888
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 531 YILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
++.|+-+-.+.|++++|..+++......+
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 88888888888888888888887765543
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.1e-06 Score=82.22 Aligned_cols=294 Identities=12% Similarity=0.017 Sum_probs=206.7
Q ss_pred chHHHHHHHHHHHh--cCChHHHHHHHccCC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH-
Q 047146 258 DVFIHNALIDMYLK--CGNIPSARKVFDEMP-----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV- 329 (608)
Q Consensus 258 ~~~~~~~li~~~~~--~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~- 329 (608)
+......-+.+++. .++...|...+-.+. ..|+.....+...+...|+.++|+..|++.+.. .|+..+-.
T Consensus 193 ~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD 270 (564)
T KOG1174|consen 193 HFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMD 270 (564)
T ss_pred CccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHH
Confidence 33444444444444 444444444443222 447778889999999999999999999998764 45543321
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCC
Q 047146 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR---DVYSYTAMIVGLAIHGK 406 (608)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 406 (608)
...-.+...|+.+....+...+....-. +...|-.-.......++++.|..+-++..+- ++..+-.-...+.+.|+
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc
Confidence 1122345678888887777766543211 1111111222334557889999888877643 44555444567889999
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHH-HHHH-hcCCHHHHHH
Q 047146 407 AWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV-DLFG-RAGLIREALD 483 (608)
Q Consensus 407 ~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~ 483 (608)
+++|.-.|+..+. +.| +...|..++.+|...|.+.+|.-+-+...+ -++.+..+.+.+. ..+. ....-++|.+
T Consensus 350 ~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 350 HTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred hHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 9999999999887 565 567999999999999999999887777766 3444555555442 3332 2234578999
Q ss_pred HHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 484 LIKSM-PLVPDA-FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 484 ~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
+++.. .+.|+- ...+.+...|...|..+.+..++++.+...|+.. ....|++++...+.+.+|.+.|......++
T Consensus 426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 426 FAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 99887 778864 4667777889999999999999999999999885 788999999999999999999998876554
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=5.5e-08 Score=97.28 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=83.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccccHHHHHHHHHHhHhhc----C-CCC-Chh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQV---GIEPDE----VTFVGVLSACSHAGLVEEGCKHFLDMSRVY----N-LQP-QTE 463 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~~ 463 (608)
++..+...+++++|..++++..+. -+.++. .+++.+...+.+.|++++|.++|+++++.. + ..+ ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 344445555555555555443321 122222 477778888888888888888888776632 1 122 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM--------PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
.++.|...|.+.+++++|.++|.+. +..|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5677888888888888888877765 23444 35889999999999999999999988873
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.08 E-value=8e-06 Score=80.93 Aligned_cols=396 Identities=10% Similarity=0.029 Sum_probs=222.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhcccCCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA-QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
+..|-..+....+.|++...+..|+......+ ......|...+...-..+-++-++.+|++.++- ++..-..-+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 45777778888889999999999887544332 335567888888888899999999999998663 3344566677
Q ss_pred HhhccCCchHHHHHHHHHHHccC----CCCCchHHHHHHHHHHHhcCCh---HHHHHHHccCCCC--C--hhhHHHHHHH
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHF----NLSPDVFIHNALIDMYLKCGNI---PSARKVFDEMPVK--N--VVSWNSMIAG 299 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~~ 299 (608)
.++..+++++|.+.+..++.... ..+.+...|..+.+..++.-+. -....+++.+..+ | ...|+.|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 78888999999998887765321 1122667777777777765432 2344556555532 2 3579999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChH----------------------HHHHHHHHHHHcC--
Q 047146 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE----------------------LGKWVHTYLDKNH-- 355 (608)
Q Consensus 300 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~----------------------~a~~~~~~~~~~~-- 355 (608)
|.+.|++++|.++|++..+. ..+..-|..+..+|+.-.... ....-++.+....
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 99999999999999988775 334444555555554322111 1111122221111
Q ss_pred ---------CCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---C------ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047146 356 ---------INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---R------DVYSYTAMIVGLAIHGKAWKALDIFSEM 417 (608)
Q Consensus 356 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~~A~~~~~~m 417 (608)
-+.++..|..-+.. ..|+..+-..++.+..+ | -...|..+...|-.+|+.+.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 01111111111111 12334444444433321 1 1234666666666666666666666666
Q ss_pred HHCCCCCC---HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCC----------C-------ChhHHHHHHHHHHhcCC
Q 047146 418 SQVGIEPD---EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ----------P-------QTEHYGCMVDLFGRAGL 477 (608)
Q Consensus 418 ~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~g~ 477 (608)
.+-..+-- ..+|..-...-.+..+++.|.++.+.+... .-. | +...|..+++.--..|-
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 55332211 123444444444555666666665555431 000 0 12345555555556666
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCchHHHHHHHHHh---CCChHHHHHH
Q 047146 478 IREALDLIKSM-PLV-PDAFVWGALLGACKIHAKVELAEIVMENLVRFEP--EGDGAYILMTNIYSS---KNRWKEALKL 550 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~---~g~~~~A~~~ 550 (608)
++.-..+++++ .++ ..+.........+-.+.-++++.+++++-+.+.+ .-...|+.....+.+ .-+.+.|..+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 66666666665 111 1222222222233445556667777776666642 223345544433332 2356778888
Q ss_pred HHHHHh
Q 047146 551 RKKMKE 556 (608)
Q Consensus 551 ~~~m~~ 556 (608)
|++..+
T Consensus 573 FEqaL~ 578 (835)
T KOG2047|consen 573 FEQALD 578 (835)
T ss_pred HHHHHh
Confidence 887776
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=2e-08 Score=86.66 Aligned_cols=161 Identities=11% Similarity=0.090 Sum_probs=122.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHH
Q 047146 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDL 471 (608)
Q Consensus 394 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 471 (608)
...+..+|.+.|++..|..-+++..+ ..|+.. ++..+...|.+.|..+.|.+.|+...+ +.| +..+.|...-.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 34456677888888888888888877 466554 777777778888888888888887765 445 46677777778
Q ss_pred HHhcCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHH
Q 047146 472 FGRAGLIREALDLIKSM---PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 547 (608)
+|..|++++|...|++. +..| -..+|..+..+..+.|+.+.|+..+++.++.+|+.+.....+.....+.|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 88888888888888877 2222 2457777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCC
Q 047146 548 LKLRKKMKERKV 559 (608)
Q Consensus 548 ~~~~~~m~~~~~ 559 (608)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 888888776654
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.1e-08 Score=92.44 Aligned_cols=193 Identities=10% Similarity=0.072 Sum_probs=163.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccc
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV-GVLSACSHAG 440 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g 440 (608)
+.+.++|.+.|.+.+|++.|+.-. .|-+.+|-.+-.+|.+..++..|+.++.+-.+ ..|-.+||. .....+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHH
Confidence 678899999999999999998765 47788999999999999999999999999888 477666654 4556788889
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
+.++|.++++.+.+. -+.+++...++...|.-.++++-|+.+++++ ++ -++..|..+.-.|.-.+++|.+...|
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999872 3446778888889999999999999999987 54 37888889989999999999999999
Q ss_pred HHHHhcC--CC-CCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 518 ENLVRFE--PE-GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 518 ~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
++++..- |+ -..+|..++.+....|++.-|.+.|+-....+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 9998763 33 34689999999999999999999999887666544
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.06 E-value=1.4e-06 Score=88.43 Aligned_cols=411 Identities=14% Similarity=0.094 Sum_probs=240.3
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcch-HHHHHHHHHhC-
Q 047146 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS-WTTLIQAYVKM- 200 (608)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~- 200 (608)
-...+...|++++|.+.+..-.+. +.............+.+.|+.++|..++..+...++ +... |..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP--dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP--DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHhhhc
Confidence 344567788899998888765443 333455667778888899999999998888766543 4444 44444444222
Q ss_pred ----CCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCc-hHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCCh
Q 047146 201 ----DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL-SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275 (608)
Q Consensus 201 ----g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 275 (608)
...+...++|+++...- |.......+.-.+..-..+ ..+...+...++.|+ +.+++.|-..|......
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-----PslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-----PSLFSNLKPLYKDPEKA 159 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-----chHHHHHHHHHcChhHH
Confidence 24566677888776542 4444333332222221122 234455555666643 34677777777755554
Q ss_pred HHHHHHHccCC------------------CCChhhH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hHHHHHHHHH
Q 047146 276 PSARKVFDEMP------------------VKNVVSW--NSMIAGLTHRGQFKEALDIFRRMQGLGLKPD-DFTLVCVLNS 334 (608)
Q Consensus 276 ~~A~~~~~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 334 (608)
+-..+++.... .|....| .-+...|-..|++++|++.+++.++. .|+ ...|..-...
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 44444444321 1222234 45566777888889999988888876 455 4566677777
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCCh----------hHH--HHHHHHHH
Q 047146 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV----------YSY--TAMIVGLA 402 (608)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~ 402 (608)
+-+.|++.+|...++...... ..|..+-+-.+..+.++|++++|.+++.....++. ..| .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887765 34566666777788888888888888887765441 123 23456788
Q ss_pred HcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCH--
Q 047146 403 IHGKAWKALDIFSEMSQV--GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI-- 478 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-- 478 (608)
+.|++..|++.|....+. .+.-|..-|.+. |.+.+-+..=.++++.--.-+..+.=.......++.|.+.-+-
T Consensus 317 r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Y---c~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~ 393 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKHFDDFEEDQFDFHSY---CLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPE 393 (517)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcccccHHHH---HHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcc
Confidence 888888888888776642 233344433322 5555555444444333222111111223334444544332110
Q ss_pred ----------------HHHHHHHHhC----------------------------------C--CCCCHHHHHHHHHHHHH
Q 047146 479 ----------------REALDLIKSM----------------------------------P--LVPDAFVWGALLGACKI 506 (608)
Q Consensus 479 ----------------~~A~~~~~~~----------------------------------~--~~p~~~~~~~l~~~~~~ 506 (608)
.+..++-+.. + ..||+.- ..|+ ..
T Consensus 394 ~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t 469 (517)
T PF12569_consen 394 AKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KT 469 (517)
T ss_pred cccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cC
Confidence 0000000000 0 0011100 0011 11
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
..=.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 470 ~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 470 EDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred CcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 22356788888888888888888888888888898888888776654
No 80
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=4.9e-06 Score=84.52 Aligned_cols=345 Identities=12% Similarity=0.084 Sum_probs=194.3
Q ss_pred HHHccCCchHHHhhCC-CCCcchHHHHHHHHHcCCCccH-HHHHHHHHH-CC--------CCCCceeHHHHHHHHhccCC
Q 047146 64 IISLSRGNEIENLSLQ-NPQVYLYNFIIQCLSNANPLEA-IALYREMLI-KG--------LLPNTYTLPYVLKACWQSQS 132 (608)
Q Consensus 64 ~~~~~g~~~~A~~~~~-~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~-~g--------~~p~~~t~~~ll~~~~~~~~ 132 (608)
.|..-|+.+.|.+.+. -.+-..|..|.+.+.+..+.+- .-.+..|.. +| -.|+ .+=.-+.-.....|.
T Consensus 737 fyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGM 815 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhh
Confidence 4566788888887222 2445669999888888777765 545555432 11 1122 333333334567899
Q ss_pred cHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 047146 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212 (608)
Q Consensus 133 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 212 (608)
+++|+.++.+..+ |..|-+.|...|.+++|.++-+.--. .. =..||..-..-+-..++.+.|++.|++
T Consensus 816 lEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR-iH--Lr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 816 LEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR-IH--LRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc-ee--hhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 9999999988877 34556778889999999999876111 11 123454455555667888888888875
Q ss_pred H----------HHCCC---------CCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcC
Q 047146 213 M----------CQANL---------RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273 (608)
Q Consensus 213 m----------~~~~~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 273 (608)
- +.... +-|...|..-..-.-..|+.+.|..+|..... |-++++..|-.|
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKCIQG 952 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEeecc
Confidence 3 22110 12233333334444455555655555544332 334555555667
Q ss_pred ChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC--------------
Q 047146 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG-------------- 339 (608)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-------------- 339 (608)
+.++|-++-++- .|......+.+.|-..|++.+|+..|.+.+. |...|+.|-..+
T Consensus 953 k~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 953 KTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred CchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 777776665543 3556667778888888888888888877643 333333332222
Q ss_pred -ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--------------CChhHHHHHHHHHHHc
Q 047146 340 -WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--------------RDVYSYTAMIVGLAIH 404 (608)
Q Consensus 340 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~ 404 (608)
+.-.|..+|++. |.. +...+..|-+.|.+.+|+++--+-.+ .|+...+.-..-++.+
T Consensus 1022 ~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1022 SDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred hhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 222222333321 111 12334567777777777665432221 2445555555555666
Q ss_pred CChHHHHHHHHHHHH----------CC----------------CCCCH----HHHHHHHHHHhccccHHHHHHHHHH
Q 047146 405 GKAWKALDIFSEMSQ----------VG----------------IEPDE----VTFVGVLSACSHAGLVEEGCKHFLD 451 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~----------~g----------------~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~ 451 (608)
.++++|..++-..++ +| -.|+. ..+..+...|.++|.+..|-+-|..
T Consensus 1094 ~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 666666555422211 11 12333 2456666778888887777654443
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=2.7e-07 Score=88.44 Aligned_cols=229 Identities=13% Similarity=-0.016 Sum_probs=147.2
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047146 304 GQFKEALDIFRRMQGLG-LKPD--DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380 (608)
Q Consensus 304 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 380 (608)
+..+.++..+.+++... ..|+ ...|......+...|+.+.|...+....+.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34555666666665431 1222 2335555555666777777777777666654 345677788888889999999999
Q ss_pred HHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcC
Q 047146 381 GVFRSMKC--R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457 (608)
Q Consensus 381 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 457 (608)
..|++..+ | +...|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 98887753 3 4577888888888999999999999998874 56543222222234556789999999977654 2
Q ss_pred CCCChhHHHHHHHHHHhcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC
Q 047146 458 LQPQTEHYGCMVDLFGRAGLIRE--ALDLIKSM-PL----VP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE-GD 528 (608)
Q Consensus 458 ~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~ 528 (608)
..|+...+ .+... ..|+..+ +.+.+.+. .. .| ....|..+...+.+.|++++|...|+++.+.+|. ..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 23333 3444433 33333222 11 12 3357888899999999999999999999999974 44
Q ss_pred chHHHHHHHHHh
Q 047146 529 GAYILMTNIYSS 540 (608)
Q Consensus 529 ~~~~~l~~~~~~ 540 (608)
.+...++.....
T Consensus 272 e~~~~~~e~~~~ 283 (296)
T PRK11189 272 EHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHH
Confidence 444555544433
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=5.1e-08 Score=92.00 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=113.8
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----ccc
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH----AGL 441 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~ 441 (608)
...+|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+ +..| .+...+..++.. ...
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCchh
Confidence 344566788899888888765 5667777788889999999999999999987 3444 344445444332 236
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 047146 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKV-ELAEIVME 518 (608)
Q Consensus 442 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~ 518 (608)
+.+|..+|+++.+ ...+++.+.+.+..++...|++++|.+++.+. ...| |+.++..++......|+. +.+.+.++
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 8899999999876 45677888888888999999999999988876 4444 566777777777778877 67788888
Q ss_pred HHHhcCCCCC
Q 047146 519 NLVRFEPEGD 528 (608)
Q Consensus 519 ~~~~~~p~~~ 528 (608)
++....|+.+
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 8888888865
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.98 E-value=1.1e-06 Score=89.32 Aligned_cols=124 Identities=18% Similarity=0.133 Sum_probs=80.0
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047146 363 GNALVDMYAKCGRIDQAFGVFRSMKC--RD-VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439 (608)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 439 (608)
+.-+...|-..|++++|.+++++..+ |+ +..|..-...+-+.|++.+|.+.++..+... .-|...-+-....+.+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 34556667777888888888776653 33 4566666777778888888888877777742 22444555556667777
Q ss_pred ccHHHHHHHHHHhHhhcCCCCChh------HH--HHHHHHHHhcCCHHHHHHHHHhC
Q 047146 440 GLVEEGCKHFLDMSRVYNLQPQTE------HY--GCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 440 g~~~~a~~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
|++++|.+++....+. +..|... .| .....+|.+.|++..|++.|..+
T Consensus 276 ~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 276 GRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888777777662 3333221 12 34466777778777777665554
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=5.3e-07 Score=82.60 Aligned_cols=170 Identities=11% Similarity=0.190 Sum_probs=71.3
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHH-----HhccCChHHHHHHHHH
Q 047146 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS-----CANIGWLELGKWVHTY 350 (608)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-----~~~~~~~~~a~~~~~~ 350 (608)
+.|++++-.+...=+..--.++--|.++++.++|..+.+++.- ..|-......+..+ ........-|.+.++.
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffql 348 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQL 348 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence 4455554433322223333455557778888888887766532 12322222222211 1112233444555555
Q ss_pred HHHcCCCCchhHH-HHHHHHhHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047146 351 LDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSMKC----RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425 (608)
Q Consensus 351 ~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 425 (608)
.-.++...|+..- .++...+.-..++++++-.++.+.. .|...+ .+.++++..|++.+|.++|-++....++ |
T Consensus 349 VG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n 426 (557)
T KOG3785|consen 349 VGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-N 426 (557)
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-h
Confidence 4444433332221 1223333333444555444444431 122222 2344455555555555555444332221 2
Q ss_pred HHHHHHH-HHHHhccccHHHHHHHH
Q 047146 426 EVTFVGV-LSACSHAGLVEEGCKHF 449 (608)
Q Consensus 426 ~~~~~~l-l~~~~~~g~~~~a~~~~ 449 (608)
..+|.++ ..+|.+.+.++.|+.++
T Consensus 427 ~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 427 KILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3333332 23344445555554443
No 85
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.4e-05 Score=81.46 Aligned_cols=507 Identities=14% Similarity=0.119 Sum_probs=284.2
Q ss_pred CCchhhhHHHHHHhhcccchhhccCChhHHHHH---------HHHHH----HhCCCCchhHHHHHHHHHccCCchHHHh-
Q 047146 11 SRYNDINTFQQLSLLHQSPRLESSKSVGQLKQF---------HAFII----KTGSPQHQTQILYDKIISLSRGNEIENL- 76 (608)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~----~~g~~~~~~~~~l~~~~~~~g~~~~A~~- 76 (608)
+++.+-++...-++..+-|+..-|..++....+ ...+. +-.+...+.+ +.++..-...++..+
T Consensus 754 dpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~V---vG~LLD~dC~E~~ik~ 830 (1666)
T KOG0985|consen 754 DPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQV---VGALLDVDCSEDFIKN 830 (1666)
T ss_pred CHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchh---hhhhhcCCCcHHHHHH
Confidence 778888888888899999999999865543221 11111 1122222222 222222233344444
Q ss_pred -hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHH----------HHHHHHHHH
Q 047146 77 -SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV----------GQQVHAYSM 144 (608)
Q Consensus 77 -~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----------a~~~~~~~~ 144 (608)
-+..+..+.-+-+..-.-+.++..- +-.++.....|.. |..+++.+.+.|...++-.+ ...+=....
T Consensus 831 Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCE 909 (1666)
T KOG0985|consen 831 LILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCE 909 (1666)
T ss_pred HHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhc
Confidence 2222333444555555556666666 6777777777765 77888888887766543221 111212222
Q ss_pred HhCc-------------------CCcHhHHHHHHHHHHhcCCHHHHHHHhcc-----------cCCCC--CCCCcchHHH
Q 047146 145 KTAL-------------------LSNVYVFNTLMRLYAVCGLIKAVHKLFHF-----------RQHPQ--AQRDLVSWTT 192 (608)
Q Consensus 145 ~~g~-------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----------m~~~~--~~~~~~~~~~ 192 (608)
++.. ....+.|....+.+.+..+.+--.+++.+ ..+.. ...|+..-..
T Consensus 910 KRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~ 989 (1666)
T KOG0985|consen 910 KRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSV 989 (1666)
T ss_pred ccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHH
Confidence 2210 01122333444444444444433333321 11101 1234455566
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCC-CCHhHHHHHHHHhhccCCchHHHHHHHHHHHcc-------------------
Q 047146 193 LIQAYVKMDYPTEAILSFFDMCQANLR-PDGMILVIVLSACSKLGDLSLGIKIHRYITDNH------------------- 252 (608)
Q Consensus 193 li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------- 252 (608)
.+.++...+-+.+-++++++..-.+-. ........++-.-+-.-+.....+..+.+..-+
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFA 1069 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHH
Confidence 678888888888888888887532211 111111111111111222222233322222210
Q ss_pred ----CCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHH
Q 047146 253 ----FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328 (608)
Q Consensus 253 ----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 328 (608)
++. +....+.|+. ..+.++.|.++-++..+ +..|+.+..+-.+.|...+|++-|-+. -|+..|
T Consensus 1070 ifkkf~~--n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y 1136 (1666)
T KOG0985|consen 1070 IFKKFDM--NVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNY 1136 (1666)
T ss_pred HHHHhcc--cHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHH
Confidence 011 2222222221 12344444444444433 457999999999999999999887543 466789
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--------------------
Q 047146 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-------------------- 388 (608)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------- 388 (608)
.-++..+.+.|.++.-..++..+.+..-+|.+. +.|+-+|++.+++.+-++++..-..
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAk 1214 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAK 1214 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHH
Confidence 999999999999999999999988887777665 5799999999999888876542110
Q ss_pred ---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHH
Q 047146 389 ---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465 (608)
Q Consensus 389 ---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 465 (608)
.++..|..+...+...|++..|...-++. .+..||..+-.+|...+.+..|. +.. .++-....-.
T Consensus 1215 l~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeL 1282 (1666)
T KOG0985|consen 1215 LLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADEL 1282 (1666)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhH
Confidence 13445556666666666666665544332 23457777777777776665552 211 1223345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-------CCCCchHHHHH
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRF-E-------PEGDGAYILMT 535 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------p~~~~~~~~l~ 535 (608)
.-++..|...|.+++-+.+++.. |...- -..|.-|.-.|.+ =++++-.+.++-.+.. + .+....|..+.
T Consensus 1283 eeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk-ykp~km~EHl~LFwsRvNipKviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK-YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELV 1361 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 77889999999999999998876 55432 2244444444433 2445555555544432 1 12234677788
Q ss_pred HHHHhCCChHHHHH
Q 047146 536 NIYSSKNRWKEALK 549 (608)
Q Consensus 536 ~~~~~~g~~~~A~~ 549 (608)
-+|.+-..||.|.-
T Consensus 1362 fLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1362 FLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHhhhhhhHHHH
Confidence 88877777777643
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=1.7e-06 Score=77.53 Aligned_cols=420 Identities=11% Similarity=0.030 Sum_probs=234.0
Q ss_pred CCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchH
Q 047146 111 KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190 (608)
Q Consensus 111 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 190 (608)
.|+..-..-+.+++..+.+..+++.+.+++....+.. +.+....+.|-.+|-...++..|...++++....+ ...-|
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qY 80 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQY 80 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHH
Confidence 4444455567777777778888888888877766643 12556677777888888888888888887654332 22223
Q ss_pred HH-HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHH--hhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 047146 191 TT-LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA--CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267 (608)
Q Consensus 191 ~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 267 (608)
.. -...+.+.+.+.+|+.+...|.+. |+...-..-+.+ ....+++..+..+.++....+ +..+.+...-
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-----~Ad~~in~gC 152 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-----EADGQINLGC 152 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-----ccchhccchh
Confidence 21 234556778888888888877542 222222222222 234567777777766655322 4445555555
Q ss_pred HHHhcCChHHHHHHHccCCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH-HHHHHHhccCChH
Q 047146 268 MYLKCGNIPSARKVFDEMPV----KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV-CVLNSCANIGWLE 342 (608)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~ 342 (608)
...+.|+++.|.+-|....+ .....||.-+ +..+.|+++.|++...++.+.|++..+..=. ....+ .....+.
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvg 230 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVG 230 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-Cchhccc
Confidence 56677888888877776653 2334555444 4446677788888888887777653221000 00000 0000000
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047146 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RDVYSYTAMIVGLAIHGKAWKALDIFSEM 417 (608)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m 417 (608)
....++... -+..+|.-...+.+.|+.+.|.+.+-.|+. -|++|...+.-.- ..+++.+..+-+.-+
T Consensus 231 Nt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 231 NTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFL 302 (459)
T ss_pred chHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHH
Confidence 000001000 012234444456788999999999999984 3667765553222 235565666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCC-CChhHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCHH
Q 047146 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ-PQTEHYGCMVDLFGR-AGLIREALDLIKSMPLVPDAF 495 (608)
Q Consensus 418 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~ 495 (608)
...+. ....||..++-.|++..-++.|..++.+-.. ..+. .+...|+ |++++.- .-..++|.+-++.+...-...
T Consensus 303 L~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~k 379 (459)
T KOG4340|consen 303 LQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEK 379 (459)
T ss_pred HhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 66432 2456999999999999999999887765433 1111 1233333 3444443 345666666555441000000
Q ss_pred HHHHHHH--HHHHcCCH---HHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 496 VWGALLG--ACKIHAKV---ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 496 ~~~~l~~--~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.-...+. --...++- ..+..-+++.+++.- .+....++.|++..++.-+.++|+.-.+-
T Consensus 380 LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 380 LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1111111 11112221 122233333333322 24566778899999999999999987653
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.7e-06 Score=84.10 Aligned_cols=215 Identities=13% Similarity=0.009 Sum_probs=138.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCCh---h-------HHHHHHH
Q 047146 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV---Y-------SYTAMIV 399 (608)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~-------~~~~li~ 399 (608)
.+..+.-+..+++.+.+-+....... .+..-++....+|...|.+..+...-+...+..- . .+..+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34445555566667776666666554 4555556666677777776666555444332111 1 1222334
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChh-HHHHHHHHHHhcCCH
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE-HYGCMVDLFGRAGLI 478 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 478 (608)
+|.+.++++.++..|.+....-..|+. ..+....+++....... .-+.|... -...-...+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhccCH
Confidence 566667777777777776654333332 11222233333332222 12334321 112225667788999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 479 REALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 479 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..|++.+.++ ...| |...|..-.-+|.+.|.+..|..-.+..++++|+....|..-+.++....+|++|.+.|++-.+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888 4456 6778888888889999999999999999999999988999889999999999999999988876
Q ss_pred CC
Q 047146 557 RK 558 (608)
Q Consensus 557 ~~ 558 (608)
.+
T Consensus 455 ~d 456 (539)
T KOG0548|consen 455 LD 456 (539)
T ss_pred cC
Confidence 55
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=6.8e-07 Score=77.39 Aligned_cols=165 Identities=15% Similarity=0.027 Sum_probs=106.6
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSAC 436 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 436 (608)
.++..+...|.+.|..+.|.+.|+... ..+..+.|....-+|..|++++|...|++....-.-|. ..||..+.-+.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 344555556666666666666666543 23445566666666777777777777777766433332 24677777777
Q ss_pred hccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a 513 (608)
.+.|+.+.|...|++..+ ..| .......+.+...+.|++..|..+++.. ...++..+....|......|+.+.+
T Consensus 150 l~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 150 LKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred hhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 777777777777777765 233 2445566777777777777777777766 3346677777777777777777777
Q ss_pred HHHHHHHHhcCCCCC
Q 047146 514 EIVMENLVRFEPEGD 528 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~ 528 (608)
.+.=.++.+..|...
T Consensus 227 ~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 227 QRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHhCCCcH
Confidence 776666666677654
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=0.00015 Score=75.81 Aligned_cols=467 Identities=13% Similarity=0.150 Sum_probs=261.8
Q ss_pred HH-HHHHHHccCCchHHHh-hCCCC---------CcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHH
Q 047146 59 IL-YDKIISLSRGNEIENL-SLQNP---------QVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKA 126 (608)
Q Consensus 59 ~~-l~~~~~~~g~~~~A~~-~~~~~---------~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~ 126 (608)
+. +.+.|.+.|-...|++ -.... +...=..+..-+... ..+. ++.+..|...+++-|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~l-sve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSL-SVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44 8888999998888886 11111 111112233334433 4455 9999999998888887777777666
Q ss_pred HhccCCcHHHHHHHHHHHHh-----------CcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCC-------------
Q 047146 127 CWQSQSLRVGQQVHAYSMKT-----------ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ------------- 182 (608)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------- 182 (608)
|...--.+.-.++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-.-..
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 66554445555555554332 134567777788999999999999988876411100
Q ss_pred --CC------------CCcchH------HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhH-------------HHHHH
Q 047146 183 --AQ------------RDLVSW------TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI-------------LVIVL 229 (608)
Q Consensus 183 --~~------------~~~~~~------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t-------------~~~ll 229 (608)
.. +|.+.| -..|..|++.-++...-.+.-.+.+.. -+... ...+.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~d--C~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVD--CSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCC--CcHHHHHHHHHHHhccCChHHHH
Confidence 00 111111 012334444333222222211111110 01111 11233
Q ss_pred HHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC------------CCCh-------
Q 047146 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP------------VKNV------- 290 (608)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------~~~~------- 290 (608)
.-+-+.+++..-..+++..+..|.. |..++|+|...|...++-.+- ++++-+ ++|+
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~---d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaY 920 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQ---DPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAY 920 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCc---chHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEee
Confidence 3445556666667777777777654 788888888777665442221 111100 0000
Q ss_pred ----------------hhHHHHHHHHHhcCChh---HHH--------HHHHHHHhCCCC--CChHHHHHHHHHHhccCCh
Q 047146 291 ----------------VSWNSMIAGLTHRGQFK---EAL--------DIFRRMQGLGLK--PDDFTLVCVLNSCANIGWL 341 (608)
Q Consensus 291 ----------------~~~~~li~~~~~~g~~~---~A~--------~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~ 341 (608)
..|-...+-+....+.+ +++ .+.++..+.+++ .|+...+..+.++...+-.
T Consensus 921 erGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp 1000 (1666)
T KOG0985|consen 921 ERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLP 1000 (1666)
T ss_pred cccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCc
Confidence 01111111222222211 111 122222222211 1233333344444444444
Q ss_pred HHHHHHHHHHHHcC--CCCchhHHHHHH---------------------------HHhHhcCCHHHHHHHHhhcCC----
Q 047146 342 ELGKWVHTYLDKNH--INTDGFIGNALV---------------------------DMYAKCGRIDQAFGVFRSMKC---- 388 (608)
Q Consensus 342 ~~a~~~~~~~~~~~--~~~~~~~~~~li---------------------------~~~~~~g~~~~A~~~~~~~~~---- 388 (608)
.+-+++++.+.-.+ +.-+....|.|+ ......+-+++|..+|+....
T Consensus 1001 ~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1001 NELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 44444444432211 111111111111 112222334555555543220
Q ss_pred ---------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 047146 389 ---------------------RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447 (608)
Q Consensus 389 ---------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 447 (608)
..+..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+
T Consensus 1081 ~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1081 IQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 24567999999999999999888776542 356689999999999999999999
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
++..+++ ..-+|.++ +.|+-+|++.+++.+-++++. .||..-...+..-|...|.++.|+-++...
T Consensus 1155 yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v------- 1220 (1666)
T KOG0985|consen 1155 YLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV------- 1220 (1666)
T ss_pred HHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------
Confidence 8887776 35566554 578999999999998887763 578888888999999999999998888754
Q ss_pred CchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 528 DGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
+.|..|+..+...|.+.-|...-++.
T Consensus 1221 -SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1221 -SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57888888888888887776554443
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.88 E-value=7.3e-06 Score=82.21 Aligned_cols=193 Identities=14% Similarity=0.203 Sum_probs=108.3
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 047146 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412 (608)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 412 (608)
.+......+.+|..+++.+...... ..-|..+.+.|...|+++.|+++|-+.. .++-.|..|.+.|++++|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 3444556666777776666554322 2334556677777777777777776542 34556667777777777776
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047146 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492 (608)
Q Consensus 413 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 492 (608)
+-.+.. |.......|..-..-.-+.|++.+|.+++-.+. .|+. -|.+|-+.|..++.+++.++-.-.-
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhh
Confidence 655432 122233344444444666677777766654432 2432 3566677777777777766651111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (608)
-..|...+..-+-..|+.+.|+..|-++ .-|..-+++|...+.|++|.++-+
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 2234445555566666666666555443 234445555555555555555443
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=2.2e-07 Score=90.78 Aligned_cols=219 Identities=14% Similarity=0.077 Sum_probs=168.4
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 047146 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALD 412 (608)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~ 412 (608)
.+.|++..|.-.|+..++.. +.+...|..|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566666666666666554 44566667777777777777778777776653 355677777778888888889999
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047146 413 IFSEMSQVGIE--------PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484 (608)
Q Consensus 413 ~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 484 (608)
.++.-.....+ ++...-.. ..+.....+....++|-++....+..+|..+...|.-.|.-.|++++|++.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 98887654211 00000000 223334455666777877777667668889999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 485 IKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 485 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
|+.+ .++| |...|+-|...+....+.++|+..+.+++++.|....++..|+-.|...|.++||.+.|-.....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9998 7778 77899999999999999999999999999999999999999999999999999999998887643
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.86 E-value=9.1e-06 Score=74.44 Aligned_cols=307 Identities=15% Similarity=0.112 Sum_probs=164.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHH---HHHhhccCCchHHHHHHHHHHHccCCCCCchH-HHHHHH
Q 047146 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV---LSACSKLGDLSLGIKIHRYITDNHFNLSPDVF-IHNALI 266 (608)
Q Consensus 191 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~-~~~~li 266 (608)
--+-..+...|++.+|+.-|....+. |+..|.++ ...|...|+-..|..-+..+++.. ||-. ....-.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK----pDF~~ARiQRg 113 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK----PDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC----ccHHHHHHHhc
Confidence 34555666677777777777766542 33333333 335666677777777777766653 2321 111223
Q ss_pred HHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHH
Q 047146 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346 (608)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 346 (608)
..+.+.|.+++|..=|+.+...++. +|...+|-+-+....+ .......+..+...|+...++.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHH
Confidence 3456666666666666655532210 0000111110000000 0112223333445566666666
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhh---cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 047146 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS---MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423 (608)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 423 (608)
....++... +.|...+..-..+|...|++..|+.-+.. +...+....-.+-..+...|+.+.++...++-.+ +.
T Consensus 177 ~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld 253 (504)
T KOG0624|consen 177 MITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LD 253 (504)
T ss_pred HHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence 666665543 34555666667777777777777655543 3345666666666677777777777777777666 56
Q ss_pred CCHH-HHHH---H---------HHHHhccccHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHH
Q 047146 424 PDEV-TFVG---V---------LSACSHAGLVEEGCKHFLDMSRVYNLQPQ-----TEHYGCMVDLFGRAGLIREALDLI 485 (608)
Q Consensus 424 p~~~-~~~~---l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~ 485 (608)
||.. .|.. + +......+++.++.+..+...+ ..|. ...+..+-.++...|++.+|++..
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 6653 1111 0 0112333455555555555544 2333 122334445556666777777766
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 486 KSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 486 ~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.+. .+.|| ..++---..+|.-...++.|++-++++.+.++++.
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 665 55554 45555555666666677777777777777777665
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.84 E-value=6e-08 Score=91.51 Aligned_cols=189 Identities=9% Similarity=0.035 Sum_probs=131.3
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHhhcC-CC---ChhHHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047146 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMK-CR---DVYSYT-AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432 (608)
Q Consensus 358 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~---~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 432 (608)
|.......+...+...++-+.+..-+++.. ++ +..++. .....+...|++++|++++.+- .+.......
T Consensus 64 ~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~ 137 (290)
T PF04733_consen 64 PELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALA 137 (290)
T ss_dssp CCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHH
T ss_pred hhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHH
Confidence 333333333333333345555655555443 22 112222 2234566789999999887642 355677778
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF----GRAGLIREALDLIKSM--PLVPDAFVWGALLGACKI 506 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 506 (608)
+..+.+.++++.|.+.++.|.+ +..|. +...++.++ .-.+.+.+|..+|+++ ...+++.+.+.+..++..
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 8999999999999999999976 34443 333344433 3345799999999999 445788899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCh-HHHHHHHHHHHh
Q 047146 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW-KEALKLRKKMKE 556 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 556 (608)
.|++++|..+++++.+.+|.++.+...++-+....|+. +.+.+++.+++.
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 678888988875
No 94
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.8e-05 Score=77.82 Aligned_cols=411 Identities=11% Similarity=0.073 Sum_probs=245.4
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHH--HHHH--H
Q 047146 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL--IQAY--V 198 (608)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--i~~~--~ 198 (608)
=+.-....+++++|.+....++..+ +.+...+..=+-+..+.+++++|+.+.+. ... ..+++.. =.+| .
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk----~~~--~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK----NGA--LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh----cch--hhhcchhhHHHHHHHH
Confidence 3445667789999999999998866 44566677777778899999999977765 221 1122222 3444 4
Q ss_pred hCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHH
Q 047146 199 KMDYPTEAILSFFDMCQANLRPD-GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277 (608)
Q Consensus 199 ~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 277 (608)
+.+..++|+..++ |..++ ..+...-...|.+.|++++|..+|+.+.+.+.+.. +...-..++.+-. .-.
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~-d~~~r~nl~a~~a----~l~ 160 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ-DEERRANLLAVAA----ALQ 160 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHHH----hhh
Confidence 7889999999988 33333 33666667788999999999999999988754321 2222223322211 111
Q ss_pred HHHHHccCCCCChhhHHHH---HHHHHhcCChhHHHHHHHHHHhCCC------CCChH--------HHHHHHHHHhccCC
Q 047146 278 ARKVFDEMPVKNVVSWNSM---IAGLTHRGQFKEALDIFRRMQGLGL------KPDDF--------TLVCVLNSCANIGW 340 (608)
Q Consensus 278 A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~--------t~~~ll~~~~~~~~ 340 (608)
+. +.+..+.....+|..+ ...+...|++.+|+++++.....+. .-+.. .-..+.-++...|+
T Consensus 161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 21 3444443333344433 3456788999999999998833211 11111 12233445668899
Q ss_pred hHHHHHHHHHHHHcCCCCchh---HHHHHHHHhHhcCCHH-HHHHHHhhcCCCC--------------hhHHHH-HHHHH
Q 047146 341 LELGKWVHTYLDKNHINTDGF---IGNALVDMYAKCGRID-QAFGVFRSMKCRD--------------VYSYTA-MIVGL 401 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~-~A~~~~~~~~~~~--------------~~~~~~-li~~~ 401 (608)
..+|..++..+++......+. ..|.|+.+-....-++ .++..++...... .+..|. ++..|
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877433322 2233333221111111 2333333332211 111222 22222
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCH
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA--GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLI 478 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 478 (608)
. +.-+.+.++...... ..|. ..+..++..+.+. ....++..++....+ +.+- ...+.-.++......|++
T Consensus 320 t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred h--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCH
Confidence 2 223333333332221 2333 3455555544332 246777777777655 2222 245666778888999999
Q ss_pred HHHHHHHH--------hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhCC
Q 047146 479 REALDLIK--------SM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF----EPEG---DGAYILMTNIYSSKN 542 (608)
Q Consensus 479 ~~A~~~~~--------~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g 542 (608)
+.|.+++. .. .+.-.+.+..++...+.+.++.+.|..++..++.- .+.. ...+..++..-.+.|
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99999988 44 33445556667777788888888888888888753 2222 234556666667889
Q ss_pred ChHHHHHHHHHHHhCC
Q 047146 543 RWKEALKLRKKMKERK 558 (608)
Q Consensus 543 ~~~~A~~~~~~m~~~~ 558 (608)
+.++|..+++++.+.+
T Consensus 473 ~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFN 488 (652)
T ss_pred chHHHHHHHHHHHHhC
Confidence 9999999999998744
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.82 E-value=1.4e-05 Score=79.60 Aligned_cols=256 Identities=12% Similarity=-0.007 Sum_probs=136.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCh-HHHHHHHHHHh----ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047146 299 GLTHRGQFKEALDIFRRMQGLGLKPDD-FTLVCVLNSCA----NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373 (608)
Q Consensus 299 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 373 (608)
.+...|++++|.+.+++..+. .|+. ..+.. ...+. ..+....+.+.+.. .....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 345566666666666666554 2322 22221 11111 12333333333332 1111122223334455566777
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccccHHHHHH
Q 047146 374 GRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI-EPDE--VTFVGVLSACSHAGLVEEGCK 447 (608)
Q Consensus 374 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~ 447 (608)
|++++|...+++..+ .+...+..+...+...|++++|..++++...... .|+. ..+..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777776653 3445666677777777888888887777765321 1222 234456667777788888888
Q ss_pred HHHHhHhhcCCCCChhHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 448 HFLDMSRVYNLQPQTEHY-G--CMVDLFGRAGLIREALDL---IKSM-PLVP---DAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
+++.........+..... + .++.-+...|....+.+. .... +..| ..........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 877765311111111111 1 222333333322222222 1111 1001 1122234556677888888888888
Q ss_pred HHHHhcCCC---------CCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 518 ENLVRFEPE---------GDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 518 ~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+.+....-. ........+.++...|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 887653211 23355667777889999999999998887543
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=3.2e-05 Score=77.04 Aligned_cols=298 Identities=14% Similarity=0.048 Sum_probs=142.8
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCHhHH-HHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHH
Q 047146 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMIL-VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264 (608)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 264 (608)
...|..+...+...|+.+.+...+....+.. ..++.... ......+...|+++.+.+.++.+.+..+. +...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~ 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR---DLLALKL 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHH
Confidence 3446666666777777877766666654432 12222211 12223445678888888888888776433 3333331
Q ss_pred ---HHHHHHhcCChHHHHHHHccCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 047146 265 ---LIDMYLKCGNIPSARKVFDEMPVKN---VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338 (608)
Q Consensus 265 ---li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 338 (608)
+.......+..+.+.+.+......+ ......+...+...|++++|...+++..+.. +.+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~---------- 151 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAV---------- 151 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHH----------
Confidence 1111222344455555554422211 2223344456666777777777777766642 2222333
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CCh--hHHHHHHHHHHHcCChHHHH
Q 047146 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RDV--YSYTAMIVGLAIHGKAWKAL 411 (608)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~~~~~~A~ 411 (608)
..+..+|...|++++|...+++... ++. ..|..+...+...|++++|.
T Consensus 152 -------------------------~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 152 -------------------------HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred -------------------------HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 4444455555555555555554332 111 12334555566666666666
Q ss_pred HHHHHHHHCCCCCC-HHHH-H--HHHHHHhccccHHHHHHH--HHHhHhhcCC-CCChhHHHHHHHHHHhcCCHHHHHHH
Q 047146 412 DIFSEMSQVGIEPD-EVTF-V--GVLSACSHAGLVEEGCKH--FLDMSRVYNL-QPQTEHYGCMVDLFGRAGLIREALDL 484 (608)
Q Consensus 412 ~~~~~m~~~g~~p~-~~~~-~--~ll~~~~~~g~~~~a~~~--~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 484 (608)
.++++.......+. .... + .++.-+...|..+.+.++ .........- ..........+.++...|+.++|.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 66666543211111 1111 1 112222223322222221 1111110000 01111122455666777788888877
Q ss_pred HHhC-C-CCC---C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 485 IKSM-P-LVP---D------AFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 485 ~~~~-~-~~p---~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
++.+ . ... . .........++...|+.++|.+.+..+...
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7766 1 111 1 111122224467888999998888877654
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=1.7e-06 Score=80.40 Aligned_cols=180 Identities=11% Similarity=-0.015 Sum_probs=117.3
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----H
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RD-V---YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV----T 428 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~ 428 (608)
....+..+...+...|++++|...|+++.. |+ . ..+..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 445556667777778888888888876653 22 1 35566777777888888888888887763 34322 3
Q ss_pred HHHHHHHHhcc--------ccHHHHHHHHHHhHhhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 047146 429 FVGVLSACSHA--------GLVEEGCKHFLDMSRVYNLQPQT-EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499 (608)
Q Consensus 429 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 499 (608)
+..+..++... |+.++|.+.+..+.+. .|+. ..+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 44444445443 6677777777777662 3322 22222111100 00000 001124
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPEGD---GAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+...+...|++++|...++++.+..|+++ ..+..++.+|.+.|++++|..+++.+..+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55678899999999999999999977654 688999999999999999999999887543
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.71 E-value=0.00013 Score=67.14 Aligned_cols=309 Identities=10% Similarity=0.046 Sum_probs=197.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCCCHhHH-HHHHH
Q 047146 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI---QAYVKMDYPTEAILSFFDMCQANLRPDGMIL-VIVLS 230 (608)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~ 230 (608)
.--+-+.+...|++.+|+.-|.. .+..|+..|-++. ..|...|+..-|+.-+.+..+ ++||-..- ..-..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHa----Ave~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHA----AVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH----HHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 33445556667999999999988 6667777787775 467888999999988888877 57775432 22334
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHH
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (608)
.+.+.|.++.|..-|+.+++..+........ +.+.--.++-+ .....+..+...|+...|+
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~ea-------qskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEA-------QSKLALIQEHW------------VLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHH-------HHHHHhHHHHH------------HHHHHHHHHhcCCchhhHH
Confidence 5678999999999999999875432111111 22111111111 1122344455566777777
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-- 388 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 388 (608)
+....+++.. +.|...+..-..+|...|.+..|+.=+..+.+..-..+ ...--+-..+...|+.+.++...++..+
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnT-e~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNT-EGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccch-HHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 7777666642 45555555556666666766666655555544432222 2333455566667777777776666553
Q ss_pred CChh----HHHHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccccHHHHHHHHHHh
Q 047146 389 RDVY----SYTAM---------IVGLAIHGKAWKALDIFSEMSQVGIEPDEV---TFVGVLSACSHAGLVEEGCKHFLDM 452 (608)
Q Consensus 389 ~~~~----~~~~l---------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~ 452 (608)
||.. .|..+ +......+++.++++-.+...+........ .+..+-.++...|++.+|++...++
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 2221 11111 223456788889998888887753221223 3444555677889999999999988
Q ss_pred HhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 047146 453 SRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD 493 (608)
Q Consensus 453 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 493 (608)
.. +.|+ +.++.--..+|.-..++++|+.-|+.. ...++
T Consensus 334 L~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 334 LD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred Hh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 65 5665 888888889999999999999999887 44443
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=1.6e-06 Score=77.33 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=88.9
Q ss_pred cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHH
Q 047146 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGAC-KIHAK--VELA 513 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a 513 (608)
.++.+++...++...+ .-+.+...|..+...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566666666666655 23446778888888888888888888888877 5555 556666666653 56666 4888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
.++++++++.+|+++.++..++..+.+.|++++|+..|+++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8888888888888888888888888888888888888888876443
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=1e-06 Score=74.26 Aligned_cols=92 Identities=9% Similarity=-0.153 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 542 (608)
+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+++|+++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444566666777777777777766 4444 56667777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHh
Q 047146 543 RWKEALKLRKKMKE 556 (608)
Q Consensus 543 ~~~~A~~~~~~m~~ 556 (608)
++++|+..+++..+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777654
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=2.2e-06 Score=91.81 Aligned_cols=199 Identities=12% Similarity=0.088 Sum_probs=166.8
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-H
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--------RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-V 427 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~ 427 (608)
+.+...|-..|......++.++|++++++... .-...|.++++.-...|.-+...++|+++.+. .|+ .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 44556677778888889999999999987753 23468999998888889888999999999883 344 4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD---AFVWGALLGA 503 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 503 (608)
.|..|...|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|..++.++ ..-|- .....-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 788888999999999999999999999655 66788999999999999999999999887 33343 3344455566
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
-.+.|+.++++.+|+..+...|.-...|+.+++.-.+.|..+.++.+|++....++.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999999999999999999999999887764
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=0.00022 Score=72.98 Aligned_cols=377 Identities=12% Similarity=0.086 Sum_probs=198.3
Q ss_pred CceeHHHHHHH--HhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC---------CCC
Q 047146 116 NTYTLPYVLKA--CWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP---------QAQ 184 (608)
Q Consensus 116 ~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~ 184 (608)
|..|--.++.. |...|+.+.|.+-...+. +..+|..+.+++.+..+++-|.-.+-.|... ...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 44555555542 556677787766655443 3468888888888888888777776665432 111
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHH
Q 047146 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264 (608)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 264 (608)
++ ..-..........|..++|+.+|++-.+. ..+=+.|-..|.+++|.++-+.--+. . =..+|..
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H---Lr~Tyy~ 863 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H---LRNTYYN 863 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e---hhhhHHH
Confidence 21 11122222334567777777777776542 23344556677777777765443222 1 1234444
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHH
Q 047146 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344 (608)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 344 (608)
...-+-..++.+.|++.|++...+--..+..|. .++.......+++ .|...|..-..-.-..|+.+.|
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHH
Confidence 555555567777777777765432111111110 1111111222222 2333444444555566777777
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047146 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424 (608)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 424 (608)
..++..+... -++++..|-.|+.++|-++-++- .|....-.+...|-..|++.+|+.+|-+.+.
T Consensus 932 l~~Y~~A~D~---------fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa----- 995 (1416)
T KOG3617|consen 932 LSFYSSAKDY---------FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA----- 995 (1416)
T ss_pred HHHHHHhhhh---------hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----
Confidence 7776665432 45556666667777776665543 3445555566666667777777776666542
Q ss_pred CHHHHHHHHHHHhcc---------------ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH-HHhC
Q 047146 425 DEVTFVGVLSACSHA---------------GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL-IKSM 488 (608)
Q Consensus 425 ~~~~~~~ll~~~~~~---------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~ 488 (608)
|...|+.|-.. .+.-.|.++|++. |.. ...-+..|-++|.+.+|+++ |+.-
T Consensus 996 ----fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 996 ----FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred ----HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhc
Confidence 22222222222 2233333344333 111 12234456666666666654 2211
Q ss_pred ----------CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------c-CCCC-------
Q 047146 489 ----------PLV--PDAFVWGALLGACKIHAKVELAEIVMENLVR---------------------F-EPEG------- 527 (608)
Q Consensus 489 ----------~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------~-~p~~------- 527 (608)
.+. .|+...+-....+..+.++++|..++-.+++ + -|..
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~ 1142 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQ 1142 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHH
Confidence 122 2555555555555555666665555443332 1 1211
Q ss_pred --CchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 528 --DGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 528 --~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
......++..|.++|.+..|.+-|.+.
T Consensus 1143 ~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1143 ERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 136778899999999988887665543
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.66 E-value=1.6e-05 Score=82.85 Aligned_cols=399 Identities=13% Similarity=0.001 Sum_probs=238.7
Q ss_pred cHHHHHHHHHHHHhCcCCcH-hHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHH
Q 047146 133 LRVGQQVHAYSMKTALLSNV-YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211 (608)
Q Consensus 133 ~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 211 (608)
...+...|- ....+.++. ..|..|-..|...-+...|...|+...+ ...-|..++......|+...+++.|..+.-
T Consensus 474 ~~~al~ali--~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe-LDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALI--RALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE-LDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHH--HHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 344443333 333344443 4688888888888888999999988444 223467778899999999999999999843
Q ss_pred HHHHCC-CCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCCh
Q 047146 212 DMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290 (608)
Q Consensus 212 ~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 290 (608)
..-+.. ...-...|..+.-.+...++...+..-|+...+..+. |...|..+..+|.++|++..|.++|.+...-++
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk---D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK---DYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch---hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 332211 0111122333344566788899999999999988655 889999999999999999999999988764443
Q ss_pred hhHH---HHHHHHHhcCChhHHHHHHHHHHhC------CCCCChHHHHHHHHHHhccCChHHHHHHHHHHH-------Hc
Q 047146 291 VSWN---SMIAGLTHRGQFKEALDIFRRMQGL------GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD-------KN 354 (608)
Q Consensus 291 ~~~~---~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-------~~ 354 (608)
..+. .....-+..|.+.+|+..+...... +..--..++..+...+...|-..++..+++..+ ..
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3322 2223456789999999998877553 111222344444444444444444444443322 22
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCCh---H---HHHHHHHHHHHCCCCCC
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV---YSYTAMIVGLAIHGKA---W---KALDIFSEMSQVGIEPD 425 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~---~---~A~~~~~~m~~~g~~p~ 425 (608)
....+...+-.+ .+|..+|-... |+. ....++..-+-..+.. + -+.+.+-.-.. ...+
T Consensus 708 ~~~~~~~~Wi~a----------sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~ 774 (1238)
T KOG1127|consen 708 SLQSDRLQWIVA----------SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIH 774 (1238)
T ss_pred hhhhhHHHHHHH----------hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhc
Confidence 111222222111 23334444443 331 1111111111111111 1 01111111111 1122
Q ss_pred HHHHHHHHHHHhc-------cc-cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHH
Q 047146 426 EVTFVGVLSACSH-------AG-LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAF 495 (608)
Q Consensus 426 ~~~~~~ll~~~~~-------~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 495 (608)
..+|..++..+.+ .+ +...|...++..++ --..+...|+.|.-+ ...|.+.-|..-|-.- -..| ...
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh
Confidence 3344444433322 22 23467777777766 223455667766555 5556666666655544 2233 677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
+|..+...|.+..+++-|.+.+.+.+.+.|.+...|...+.+....|+.-++..+|..
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 8888888888999999999999999999999998898888888888988888888877
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=4.2e-05 Score=74.62 Aligned_cols=166 Identities=16% Similarity=0.091 Sum_probs=95.8
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHH
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEE 444 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 444 (608)
+..+|.+.++++.|+..|.+...+... -....+....++++.......- +.|... -...-.+.+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 334666667777777777764321000 0111222334444444444433 233321 12222555677778888
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
|...|.+++.. -+-|...|....-+|.+.|.+..|++-.+.. ...|+ ...|.--..++....+++.|.+.+++.++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88877777762 2346677777777778888777777765555 33443 23344344555666778888888888888
Q ss_pred cCCCCCchHHHHHHHHHh
Q 047146 523 FEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 523 ~~p~~~~~~~~l~~~~~~ 540 (608)
.+|++......+..++..
T Consensus 455 ~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred cCchhHHHHHHHHHHHHH
Confidence 888777655555555543
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=3.6e-05 Score=87.08 Aligned_cols=323 Identities=10% Similarity=-0.005 Sum_probs=187.8
Q ss_pred hccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC----CC----C--h--hhHHHHHHHH
Q 047146 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP----VK----N--V--VSWNSMIAGL 300 (608)
Q Consensus 233 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~----~--~--~~~~~li~~~ 300 (608)
...|+++.+..++..+....... +..........+...|++++|...+.... .. + . .....+...+
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~--~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLE--NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhc--CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34566666555555432111111 22233444555567788888877776542 11 1 1 1112233445
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCh----HHHHHHHHHHhccCChHHHHHHHHHHHHc----CC-CCchhHHHHHHHHhH
Q 047146 301 THRGQFKEALDIFRRMQGLGLKPDD----FTLVCVLNSCANIGWLELGKWVHTYLDKN----HI-NTDGFIGNALVDMYA 371 (608)
Q Consensus 301 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 371 (608)
...|++++|...+++..+.--..+. .....+...+...|+++.|...+...... |. .........+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788888888888887653111121 23344445566788888888887776542 11 111234455666777
Q ss_pred hcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 047146 372 KCGRIDQAFGVFRSMKC-------R----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQV--GIEPD--EVTFVGVLSAC 436 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~ 436 (608)
..|+++.|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 88999888887765431 1 1123444555667779999998888876542 11122 22444455567
Q ss_pred hccccHHHHHHHHHHhHhhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHY-----GCMVDLFGRAGLIREALDLIKSMPL-V-PDA----FVWGALLGACK 505 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~~ 505 (608)
...|+.++|.+.+...............+ ...+..+...|+.+.|.+++..... . ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 77888888888887775421111111111 1122444567888888888876621 1 111 11344556778
Q ss_pred HcCCHHHHHHHHHHHHhcCC------CCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 506 IHAKVELAEIVMENLVRFEP------EGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
..|++++|...++++.+... ....++..++.+|.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999888888876521 12235667788888999999998888888753
No 106
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.64 E-value=0.00042 Score=70.06 Aligned_cols=193 Identities=17% Similarity=0.214 Sum_probs=94.5
Q ss_pred HHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHH
Q 047146 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309 (608)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 309 (608)
.+......+.+|..+++.+.... . ....|..+.+-|...|+++.|+++|.+.. .++--|..|.+.|+|..|
T Consensus 740 eaai~akew~kai~ildniqdqk--~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--T--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--c--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 34444555566666665555442 1 23344555556666666666666664432 234445556666666666
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCC
Q 047146 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389 (608)
Q Consensus 310 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 389 (608)
.++-.+.. | .......|-+-..-+-+.|++.+|++++-.+..|
T Consensus 811 ~kla~e~~--~-----------------------------------~e~t~~~yiakaedldehgkf~eaeqlyiti~~p 853 (1636)
T KOG3616|consen 811 FKLAEECH--G-----------------------------------PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEP 853 (1636)
T ss_pred HHHHHHhc--C-----------------------------------chhHHHHHHHhHHhHHhhcchhhhhheeEEccCc
Confidence 55543332 1 1122222233333334455555555555555555
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHH
Q 047146 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE--VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467 (608)
Q Consensus 390 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 467 (608)
+. .|+.|-++|..+..+++..+- .|+. .|-..+..-+...|+++.|...|-+... |.+
T Consensus 854 ~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~ka 913 (1636)
T KOG3616|consen 854 DK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKA 913 (1636)
T ss_pred hH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHH
Confidence 43 244555556655555554442 2221 2444444455555566555555544432 334
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 047146 468 MVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~ 488 (608)
-+++|...+.|++|-++-+.-
T Consensus 914 avnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 914 AVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred HHHHhhhhhhHHHHHHHHhcc
Confidence 455555555555555554443
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=0.00024 Score=80.38 Aligned_cols=331 Identities=9% Similarity=0.003 Sum_probs=206.5
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCC----CCc--hHHHHHHHHHH
Q 047146 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL----SPD--VFIHNALIDMY 269 (608)
Q Consensus 196 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~p~--~~~~~~li~~~ 269 (608)
.....|+++.+..++..+.......+..........+...|+++++...+......-... .|. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777776665222111222223334445567889999999988776531111 011 12223344556
Q ss_pred HhcCChHHHHHHHccCC----CCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--hHHHHHHHHHHh
Q 047146 270 LKCGNIPSARKVFDEMP----VKNV----VSWNSMIAGLTHRGQFKEALDIFRRMQGLGL---KPD--DFTLVCVLNSCA 336 (608)
Q Consensus 270 ~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~ 336 (608)
...|++++|...+++.. ..+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 78999999998887643 2221 2345566677889999999999988765311 111 234445566678
Q ss_pred ccCChHHHHHHHHHHHH----cCCCC---chhHHHHHHHHhHhcCCHHHHHHHHhhcCC------C--ChhHHHHHHHHH
Q 047146 337 NIGWLELGKWVHTYLDK----NHINT---DGFIGNALVDMYAKCGRIDQAFGVFRSMKC------R--DVYSYTAMIVGL 401 (608)
Q Consensus 337 ~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~ 401 (608)
..|+++.|...+..... .+... ....+..+...+...|++++|...+.+... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999998877654 22211 223344566677788999999988876532 1 123444566678
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHhccccHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHH
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEP-DEVTF-----VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ---TEHYGCMVDLF 472 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~ 472 (608)
...|++++|...+.+.....-.. ....+ ...+..+...|+.+.|.+.+...... ..... ...+..+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHH
Confidence 88999999999998875421111 11111 11123345578999998887766441 11111 11235677888
Q ss_pred HhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 473 GRAGLIREALDLIKSM-------PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
...|+.++|...+++. +..++ ..+...+..++...|+.++|...+.++.++....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 8999999999988876 22222 2355566678899999999999999999886443
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.60 E-value=0.00015 Score=75.91 Aligned_cols=445 Identities=13% Similarity=0.071 Sum_probs=246.6
Q ss_pred cchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCc-CCcHhHHHHHHH
Q 047146 83 VYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL-LSNVYVFNTLMR 160 (608)
Q Consensus 83 ~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~ 160 (608)
...|..|-..|....+... .+.|+...+-.. .+........+.+++..+++.|..+.-..-+... ..-..-|-..--
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 3567777777665554444 666766655432 2455666677777777777777776222211110 001112222333
Q ss_pred HHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHH--HHHhhccCCc
Q 047146 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV--LSACSKLGDL 238 (608)
Q Consensus 161 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l--l~~~~~~~~~ 238 (608)
.|.+.++...|..-|+..... -+.|...|..+..+|...|.+..|+++|.+... +.|+.. |... .-.-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~-dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRT-DPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcC-CchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhH
Confidence 466677777777777764442 234667777788888888888888888877655 344432 2211 1123456777
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHH-------HhcCChHHHHHHHccCC-----------CCChhhHHHHHHHH
Q 047146 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMY-------LKCGNIPSARKVFDEMP-----------VKNVVSWNSMIAGL 300 (608)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~-------~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~ 300 (608)
.++...+..++...-. -....+.+...+ .-.|-...|.++|+.-. ..+...|-.+
T Consensus 647 keald~l~~ii~~~s~---e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a---- 719 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSL---ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA---- 719 (1238)
T ss_pred HHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----
Confidence 7777777766653211 122222222222 22233333333333211 0111222221
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCCh---H---HHHHHHHHHHHcCCCCchhHHHHHHHHhHh--
Q 047146 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL---E---LGKWVHTYLDKNHINTDGFIGNALVDMYAK-- 372 (608)
Q Consensus 301 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 372 (608)
..|..+|-... .. .|+......+..-.-..+.. + .|.+.+ ........+...+..|+.-|.+
T Consensus 720 ------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 720 ------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred ------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHhhccchHHHHhHHHHHHH
Confidence 12222333222 11 22222222222112222222 1 011100 0011111123333333333322
Q ss_pred --cC----CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccH
Q 047146 373 --CG----RIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLV 442 (608)
Q Consensus 373 --~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 442 (608)
+| +...|...+.... ..+...||+|.-. ...|++.-|...|-+-... .| +..+|..+.-.|.+..++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccH
Confidence 22 2345666666443 4677888888665 5567777777777666553 44 556888888889999999
Q ss_pred HHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047146 443 EEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-------PLVPDAFVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 443 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~ 514 (608)
+.|...|...+. +.| +...|-.........|+.-++..+|..- +-.|+...|..........|++++-+
T Consensus 867 E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 867 EHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred HHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 999999998865 455 5666766666666788888888888762 44567777776666666777666544
Q ss_pred H----------HHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 515 I----------VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 515 ~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
. .+++.....|+...+|...+....+.+.+.+|.++..+..
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3 4445555678888899999999999999988888777653
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=2.5e-05 Score=70.22 Aligned_cols=289 Identities=11% Similarity=-0.015 Sum_probs=184.8
Q ss_pred HHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHH-HHHHH
Q 047146 86 YNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL-MRLYA 163 (608)
Q Consensus 86 ~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~ 163 (608)
+++.+.-+.+..++.. ++++..-.+...+ +....+.+--.|-...++..|-..++++-.. .|...-|... ...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5666666777788888 8888877766422 5666777777777888999999999888764 3555444332 24456
Q ss_pred hcCCHHHHHHHhcccCCCCCCCCcchHHHHHH--HHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHH
Q 047146 164 VCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ--AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241 (608)
Q Consensus 164 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 241 (608)
+.+.+.+|+++...|... ++...-..-+. ...+.+++..+..++++....| +..+.+...-...+.|+.+.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 789999999999886442 22222222222 2345788888988888875432 444555555556789999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCC-----------------Ch--------------
Q 047146 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-----------------NV-------------- 290 (608)
Q Consensus 242 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------------~~-------------- 290 (608)
.+-|+...+.+ +.. ....|+. .-+..+.|+++.|++...++.++ |+
T Consensus 164 vqkFqaAlqvs-Gyq-pllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 164 VQKFQAALQVS-GYQ-PLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHhhc-CCC-chhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999999875 432 3445554 44566789999999998887632 11
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047146 291 -VSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368 (608)
Q Consensus 291 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 368 (608)
..+|.-...+.+.|+++.|.+.+.+|.-. .-..|++|...+.-.= ..+++..+.+-+..+...+. ....++..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 12333334456778888888888777432 1234566655443221 22334444444455555443 44556667777
Q ss_pred HhHhcCCHHHHHHHHhhcCC
Q 047146 369 MYAKCGRIDQAFGVFRSMKC 388 (608)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~ 388 (608)
.||+..-++.|-.++.+-..
T Consensus 319 lyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcc
Confidence 88888888888887766543
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=1.2e-05 Score=79.03 Aligned_cols=247 Identities=15% Similarity=0.091 Sum_probs=173.9
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChh
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFK 307 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 307 (608)
-+.+.|++.+|.-.|+..++..+. +...|.-|.......++-..|+..+.+.. +.|....-+|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 345778888888888888888655 77888888888888888888888887765 345666777778888899889
Q ss_pred HHHHHHHHHHhCCCC-----C---ChHHHHHHHHHHhccCChHHHHHHHH-HHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047146 308 EALDIFRRMQGLGLK-----P---DDFTLVCVLNSCANIGWLELGKWVHT-YLDKNHINTDGFIGNALVDMYAKCGRIDQ 378 (608)
Q Consensus 308 ~A~~~~~~m~~~g~~-----p---~~~t~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 378 (608)
.|+..|++.+....+ + +..+-.. ........+....++|- .....+...|+.+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999888664310 0 0000000 11111122333444444 44455656888888999999999999999
Q ss_pred HHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 379 AFGVFRSMKC--R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 379 A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
|.+.|+.... | |...||.|...++...+.++|+..|++..+ ++|+-+ ....|.-+|...|.+++|.+.|-.+..
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999998763 4 678999999999999999999999999998 789865 666677789999999999988877755
Q ss_pred hcCC--------CCChhHHHHHHHHHHhcCCHHHHHHH
Q 047146 455 VYNL--------QPQTEHYGCMVDLFGRAGLIREALDL 484 (608)
Q Consensus 455 ~~~~--------~p~~~~~~~l~~~~~~~g~~~~A~~~ 484 (608)
-... .++...|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1110 01224555555555555555544433
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.57 E-value=2.3e-06 Score=72.13 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=95.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 047146 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-P 489 (608)
Q Consensus 412 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 489 (608)
.++++..+ +.|+. +.....++...|++++|...|..+.. ..| +...|..+..++.+.|++++|...|+.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 45554 44566777888899999888888876 344 6778888888899999999999998888 4
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 490 LVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 490 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
..| +...+..+..++...|++++|...++++++..|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 455 67788888888999999999999999999999999888877766554
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.2e-07 Score=56.78 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=16.1
Q ss_pred CcCCcHhHHHHHHHHHHhcCCHHHHHHHhccc
Q 047146 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178 (608)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 178 (608)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555443
No 113
>PLN02789 farnesyltranstransferase
Probab=98.52 E-value=5.2e-05 Score=72.73 Aligned_cols=177 Identities=9% Similarity=0.012 Sum_probs=112.3
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHH
Q 047146 375 RIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKA--WKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKH 448 (608)
Q Consensus 375 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 448 (608)
++++++..++++.+ ++..+|+.....+.+.|+. ++++.+++++.+. .| |..+|.....++...|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45666666665542 3445566555455555542 5667777777763 44 445777777777777777777777
Q ss_pred HHHhHhhcCCCCChhHHHHHHHHHHhc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHH
Q 047146 449 FLDMSRVYNLQPQTEHYGCMVDLFGRA---GLI----REALDLIKSM-PLVP-DAFVWGALLGACKIH----AKVELAEI 515 (608)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~ 515 (608)
+.++++. -.-+...|+....++.+. |.. ++++++..++ ...| |...|+.+...+... +...+|..
T Consensus 165 ~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 165 CHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 7777662 122455555555444443 222 3556665444 4455 666777777777663 34566888
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhCC------------------ChHHHHHHHHHHH
Q 047146 516 VMENLVRFEPEGDGAYILMTNIYSSKN------------------RWKEALKLRKKMK 555 (608)
Q Consensus 516 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 555 (608)
...++...+|.++.+...|+++|.... ..++|.++++.+.
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 888888888888888889999998643 2367888888873
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.50 E-value=0.0016 Score=63.97 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=58.1
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMKC-----RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLS 434 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~ 434 (608)
.+|..+++.-.+..-++.|..+|.+..+ .++...++++.-||. ++..-|.++|+--.+. -+|. .-....+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHH
Confidence 3444455555555555555555555442 134444445444442 3445555555443332 2222 22233344
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQ--TEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
-+...++-..+..+|+++... ++.|+ ...|..+++-=...|+...+.++-+++
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 445555555555555555552 34433 345555555555555555555554443
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=2.4e-05 Score=79.03 Aligned_cols=213 Identities=14% Similarity=0.130 Sum_probs=174.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 337 (608)
--..-..+...+.+.|-...|..+|+++ ..|...|.+|+..|+..+|..+..+-.+. +||...|..+......
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3445567888899999999999999885 57888999999999999999999888883 7999999999888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 047146 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIF 414 (608)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~ 414 (608)
..-+++|.++.++.... .-..+.....+.++++++.+.|+.-.+ --..+|-....+..+.+++..|.+.|
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 88888888888765332 112222333457899999999986543 34578888888889999999999999
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 415 SEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 415 ~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
.+-.. ..||.. .|+.+-.++.+.++-.+|...+.+..+ ++ .-+...|...+-...+.|.+++|++.+.++
T Consensus 543 ~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 543 HRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99888 688765 899999999999999999999999988 55 445567777788888999999999999887
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=1.6e-05 Score=70.58 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 474 (608)
..+-..+...|+-+....+....... ..-|.......+......|++.+|...+.++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33445555666666666665554432 122333444466666667777777777776665 445566777777777777
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 047146 475 AGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (608)
.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|..++.......+.++.+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777776666655 4444 455666666666677777777777777776666666677777777777777777766654
Q ss_pred H
Q 047146 553 K 553 (608)
Q Consensus 553 ~ 553 (608)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=3.3e-07 Score=54.79 Aligned_cols=33 Identities=42% Similarity=0.664 Sum_probs=23.8
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 387 (608)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777763
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=2.6e-05 Score=69.52 Aligned_cols=154 Identities=9% Similarity=0.066 Sum_probs=116.5
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHH
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 445 (608)
-+-.|...|+++.+....+.+..+. ..+...++.++++..+++..+.. +.|...|..+...+...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456788888877655544333221 01223566778888888877742 34566889999999999999999
Q ss_pred HHHHHHhHhhcCCCC-ChhHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047146 446 CKHFLDMSRVYNLQP-QTEHYGCMVDLF-GRAGL--IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMEN 519 (608)
Q Consensus 446 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 519 (608)
...|++..+ +.| +...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|...+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999977 345 677888888864 67777 59999999998 5566 677888888999999999999999999
Q ss_pred HHhcCCCCCchH
Q 047146 520 LVRFEPEGDGAY 531 (608)
Q Consensus 520 ~~~~~p~~~~~~ 531 (608)
+++..|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999998876443
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.43 E-value=4.7e-05 Score=82.17 Aligned_cols=225 Identities=17% Similarity=0.118 Sum_probs=137.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCh---HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 047146 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDD---FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366 (608)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (608)
..|-..|.-..+.++.++|.+++++.+.. ++.-.. ..|.+++..-..-|.-+...++|+.+.+.. ..-.+|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 34555555555555555555555555432 111111 123333333333333444444444443322 223455677
Q ss_pred HHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--H-HHHHHHHHHHhccc
Q 047146 367 VDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD--E-VTFVGVLSACSHAG 440 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~-~~~~~ll~~~~~~g 440 (608)
...|.+.+..++|.++++.|.+ .....|...+..+.++++.+.|..++.+..+. -|. . ....-.+..-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcC
Confidence 7788888888888888888764 35677888888888888888888888887774 343 2 24444555566778
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM---PLVP--DAFVWGALLGACKIHAKVELAEI 515 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~ 515 (608)
+.+++..+|+.... ..+.....|+.++++-.+.|+.+.+..+|++. ++.| --..|.-.+.--..+|+-+.++.
T Consensus 1615 DaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 88888888888876 34446778888888888888888888888887 3433 23355555555556666655555
Q ss_pred HHHHHH
Q 047146 516 VMENLV 521 (608)
Q Consensus 516 ~~~~~~ 521 (608)
+=.++.
T Consensus 1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred HHHHHH
Confidence 544443
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=2.4e-05 Score=72.71 Aligned_cols=183 Identities=13% Similarity=0.017 Sum_probs=127.5
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CC-hh---HH
Q 047146 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT--DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RD-VY---SY 394 (608)
Q Consensus 323 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~ 394 (608)
.....+......+...|+++.|...++.+.+..... ....+..+..+|.+.|++++|...++.+.+ |+ .. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345567777788899999999999999988765321 124667788999999999999999998863 32 22 45
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHH
Q 047146 395 TAMIVGLAIH--------GKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465 (608)
Q Consensus 395 ~~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 465 (608)
..+..++.+. |++++|.+.|+++... .|+.. ....+..... ... ... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH---------HHH
Confidence 5555566554 7889999999999884 56543 2222211100 000 000 012
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM-PL---VP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
..+...|.+.|++++|+..+++. .. .| ....+..+..++...|++++|...++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 25667788999999999988887 22 23 3567888889999999999999988888766553
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00021 Score=63.61 Aligned_cols=174 Identities=14% Similarity=0.061 Sum_probs=104.9
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 047146 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427 (608)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 427 (608)
.+.+.......+......-...|+..|++++|++..+... +....-.=...+.+..+.+-|.+.+++|.+ --+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHH
Confidence 3333333333333333334456777788888887777632 333333334455666777777778887776 22455
Q ss_pred HHHHHHHHHhc----cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047146 428 TFVGVLSACSH----AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALL 501 (608)
Q Consensus 428 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 501 (608)
|.+.|.+++.+ .+.+..|.-+|+++.+ ...|+..+.+....++...|++++|..++++. ....++.+...++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 66666655443 3457777777777765 46677777777777777777777777777776 3333566666666
Q ss_pred HHHHHcCCH-HHHHHHHHHHHhcCCCCC
Q 047146 502 GACKIHAKV-ELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 502 ~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 528 (608)
......|.. +.-.+.+.++....|..+
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 555555544 334456666666666654
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.40 E-value=4.3e-05 Score=80.89 Aligned_cols=159 Identities=10% Similarity=0.003 Sum_probs=115.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 047146 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGC 467 (608)
Q Consensus 390 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 467 (608)
++..+..|.....+.|++++|..+++...+ +.|+.. ....+...+.+.+.+++|....+.... ..| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 467777788888888888888888888888 577664 667777788888888888888888866 344 4666777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChH
Q 047146 468 MVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 545 (608)
+..++.+.|++++|.++|++. ...| +..++..+..++...|+.++|...|+++.+...+....|+.+. +++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 888888888888888888887 3344 4667888888888888888888888888887666555554433 2333
Q ss_pred HHHHHHHHHHhCCC
Q 047146 546 EALKLRKKMKERKV 559 (608)
Q Consensus 546 ~A~~~~~~m~~~~~ 559 (608)
.-..+++++.-.+.
T Consensus 234 ~~~~~~~~~~~~~~ 247 (694)
T PRK15179 234 ADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHcCcccc
Confidence 34455666544333
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.40 E-value=0.0027 Score=62.38 Aligned_cols=147 Identities=11% Similarity=0.068 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 047146 407 AWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDL 484 (608)
Q Consensus 407 ~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 484 (608)
.+.....++++...- ++|+ .+|..+++...+..-++.|..+|.++.++ +..+ ++.++++++.-|| .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 444555555555421 2222 36666777777777778888888887774 4444 6667777777655 4566777777
Q ss_pred HHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-CCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 485 IKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF--EPE-GDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 485 ~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
|+-- ....++..-...+.-+...++-..++.+|++++.. .|+ ...+|..++.-=..-|+...+.++=+++..
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7765 22223444455566667777777788888877766 222 224777777777777877777777666643
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=1.4e-05 Score=80.62 Aligned_cols=190 Identities=14% Similarity=0.112 Sum_probs=105.6
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 436 (608)
+|-...-..+...+...|-...|..+|+++ ..|.-.|-.|+..|+..+|..+..+..+ -+||...|..++...
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 333334444445555555555555555543 2444444455555555555555444444 244444444444444
Q ss_pred hcc----------------------------ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047146 437 SHA----------------------------GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKS 487 (608)
Q Consensus 437 ~~~----------------------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (608)
... ++++++.+.|+.-.+ +.| ...+|-.+.-+..+.++++.|.+.|..
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 333 455555555554433 222 345555556666666666666666665
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 488 M-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 488 ~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
. ...| +...|+.+-.+|.+.++-.+|...+.++.+-+-.+...|-...-+..+.|.|++|.+.+.++.+
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5 4455 3446777777777777777777777777666655555666666666677777777777766654
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.39 E-value=9.4e-06 Score=67.13 Aligned_cols=96 Identities=11% Similarity=-0.012 Sum_probs=86.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
+....-.+...+...|++++|.++|+-. .+.| +...|-.|...|...|++++|+..+.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455566777788999999999999988 5556 6778889999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHh
Q 047146 539 SSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 539 ~~~g~~~~A~~~~~~m~~ 556 (608)
...|+.+.|++.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998875
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.34 E-value=5.1e-05 Score=67.52 Aligned_cols=135 Identities=12% Similarity=0.074 Sum_probs=112.9
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 047146 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGAL 500 (608)
Q Consensus 423 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 500 (608)
.|+......+-.++.-.|+-+....+...... ....+......++....+.|++.+|...+++. .-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55433225566677778888887777666543 33446667777999999999999999999998 445699999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 501 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
.-+|.+.|+.+.|...+.++.++.|.++.+++.|+..|.-.|++++|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999876554
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00013 Score=64.33 Aligned_cols=178 Identities=11% Similarity=0.111 Sum_probs=92.6
Q ss_pred CCHHHHHHHHhhcCC--------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccccHH
Q 047146 374 GRIDQAFGVFRSMKC--------RDV-YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV-LSACSHAGLVE 443 (608)
Q Consensus 374 g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~ 443 (608)
.+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+...|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 456666666655541 111 12333333444556666666666666554 2 433221111 12234456666
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047146 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 521 (608)
+|+++++.+.++ -+.|..++-.-+-+.-..|+.-+|++-+.+. .+..|...|.-+...|...|+++.|.-.+++++
T Consensus 104 ~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 666666666552 1234445544444455555555555554444 333466666666666666666666666666666
Q ss_pred hcCCCCCchHHHHHHHHHhCCC---hHHHHHHHHHHH
Q 047146 522 RFEPEGDGAYILMTNIYSSKNR---WKEALKLRKKMK 555 (608)
Q Consensus 522 ~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~ 555 (608)
=..|-++..+..+++++.-.|. .+-|.+++.+..
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666666566666666554442 334455554443
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=1.8e-05 Score=77.32 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGAC 504 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 504 (608)
.....++..+...++++.|..+++++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34555666677778888888888888762 244 4455777787888888888888877 3344 666666667788
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
...++++.|..+.+++.+..|++..+|..|+.+|.+.|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999886
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.28 E-value=1.3e-05 Score=67.07 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
......+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555666666777777777777665 3334 55666666677777777777777777777777777777777777777
Q ss_pred hCCChHHHHHHHHHHHhC
Q 047146 540 SKNRWKEALKLRKKMKER 557 (608)
Q Consensus 540 ~~g~~~~A~~~~~~m~~~ 557 (608)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777776653
No 130
>PLN02789 farnesyltranstransferase
Probab=98.28 E-value=9.9e-05 Score=70.83 Aligned_cols=192 Identities=7% Similarity=0.027 Sum_probs=140.9
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccc
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKCR---DVYSYTAMIVGLAIHG-KAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAG 440 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 440 (608)
+-.++...++.++|+.+.+.+.+. +..+|+..-.++...| ++++++..++++.+. .|+ ..+|..-...+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 334455667888888888877642 4456776666677777 679999999999985 443 346665555556666
Q ss_pred cH--HHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CC----
Q 047146 441 LV--EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIH---AK---- 509 (608)
Q Consensus 441 ~~--~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~---- 509 (608)
.. +++..+++++.+ .-+-+..+|+...-++.+.|+++++++.++++ ...| |...|+.....+.+. |.
T Consensus 121 ~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 53 677888888876 22336788998888999999999999999998 4444 677787776665544 22
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC----CChHHHHHHHHHHHhCCCcc
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSK----NRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~~ 561 (608)
.+++.....++++..|++.++|..+..++... ++..+|.+.+.+..+.+++.
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s 254 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH 254 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc
Confidence 35678888899999999999999999999883 44567888888876655443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.00052 Score=66.65 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=103.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT-FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGR 474 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 474 (608)
....+...|.+++|+..++.+... .||... .......+.+.++.++|.+.++++.. ..|+ ....-.+..+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHh
Confidence 334455678888888888888774 665554 44445568888888888888888876 4555 5566677888888
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 047146 475 AGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552 (608)
Q Consensus 475 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (608)
.|++.+|+.+++.. ..+-|+..|..|..+|...|+..++.... +..|...|+|++|+..+.
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHH
Confidence 88888888888877 33347788888888888888877665544 445778888888888888
Q ss_pred HHHhCC
Q 047146 553 KMKERK 558 (608)
Q Consensus 553 ~m~~~~ 558 (608)
...++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 887654
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=0.00018 Score=69.72 Aligned_cols=180 Identities=17% Similarity=0.082 Sum_probs=132.5
Q ss_pred CCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 047146 374 GRIDQAFGVFRSMKC------RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447 (608)
Q Consensus 374 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 447 (608)
.++.++...-+.++. ++...+...+.+.........+-.++.+-.+. .-...-|... ......|.++.|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHH
Confidence 355566666666653 45555666666554433333333333222221 1112233333 34556799999999
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 047146 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEP 525 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 525 (608)
.+..+.. ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.+++.....+|
T Consensus 328 ~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999887 34456777788899999999999999999998 67786 66777788999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 526 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+++..|..|+.+|...|+..++..-.-++....
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 999999999999999999999999888876543
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00032 Score=74.44 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=118.0
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFV 430 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~ 430 (608)
..+.++..+..|.....+.|++++|+.+++...+ | +...+..++.++.+.+++++|+..+++... ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 4566788888999999999999999999998874 4 456788889999999999999999999998 477654 667
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALL 501 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 501 (608)
.+..++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|+.. ...|....|+..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 777789999999999999999987 23334788999999999999999999999988 3344455554443
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.00039 Score=74.59 Aligned_cols=128 Identities=6% Similarity=0.044 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 471 (608)
.+..+..+|-+.|+.++|..+++++.+. .| |..+.+.+.-.++.. ++++|.+++.++...
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------- 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------- 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------
Confidence 4555555666666666666666666653 23 334555555555555 666666665555441
Q ss_pred HHhcCCHHHHHHHHHhC----------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 472 FGRAGLIREALDLIKSM----------------------PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~----------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
|...+++.++.++|.++ +...-..++--+-.-|...++++++..+++.+++.+|.|..
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 22233333344433333 11223344445556678888999999999999999999988
Q ss_pred hHHHHHHHHH
Q 047146 530 AYILMTNIYS 539 (608)
Q Consensus 530 ~~~~l~~~~~ 539 (608)
+...++..|.
T Consensus 259 a~~~l~~~y~ 268 (906)
T PRK14720 259 AREELIRFYK 268 (906)
T ss_pred hHHHHHHHHH
Confidence 8888888887
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=0.0023 Score=68.95 Aligned_cols=234 Identities=11% Similarity=0.043 Sum_probs=134.8
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHh
Q 047146 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302 (608)
Q Consensus 223 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 302 (608)
..+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++..+ .++.....
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 34556666666666666666666655554322 222233333355555554443322 33333444
Q ss_pred cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 047146 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382 (608)
Q Consensus 303 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 382 (608)
..++.-+..+...|... .-+...+..+..+|.+.|+.+++..+++.+++.. +.++.+.|.+...|... ++++|.++
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 44454444444444442 2334466666777777777777777777777766 56677778888888877 88888877
Q ss_pred HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC
Q 047146 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461 (608)
Q Consensus 383 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 461 (608)
+.+. +..|...+++.++.++|.++... .|+.. .|..++ +.+....+..--
T Consensus 172 ~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~----------------~ki~~~~~~~~~ 222 (906)
T PRK14720 172 LKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIE----------------RKVLGHREFTRL 222 (906)
T ss_pred HHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHH----------------HHHHhhhccchh
Confidence 6653 34477777888888888888874 44433 222222 222222222223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACK 505 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 505 (608)
..++--+-..|-..++++++..+++.+ ...| |.....-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 344555566677777788888888777 4444 4445555555443
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=4.4e-06 Score=50.82 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 047146 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222 (608)
Q Consensus 188 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 222 (608)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=0.00011 Score=71.95 Aligned_cols=126 Identities=15% Similarity=0.163 Sum_probs=104.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccc
Q 047146 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAG 440 (608)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 440 (608)
...+|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++++..+. .| +...+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 33566777778899999999999999877777778888898899999999999999874 44 4556666666788999
Q ss_pred cHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047146 441 LVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 492 (608)
+.+.|.++.+++.. ..| +..+|..|+.+|.+.|+++.|+-.++.++..|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999976 456 46799999999999999999999999986544
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00064 Score=60.66 Aligned_cols=243 Identities=9% Similarity=0.063 Sum_probs=155.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 376 (608)
++-+.-.|.+..++..-...... +-+...-.-+-++|...|.+.... ..+.... .+.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 34455667787777766554433 233444444556666665543221 1121112 23333333333333333443
Q ss_pred HHH-HHHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 047146 377 DQA-FGVFRSMKCR----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451 (608)
Q Consensus 377 ~~A-~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 451 (608)
+.- .++.+.+..+ +......-...|++.+++++|++...... ....... =+..+.+..+++.|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 332 2333333332 22333333456889999999999887622 2222222 24456778889999999999
Q ss_pred hHhhcCCCCChhHHHHHHHHHH----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 047146 452 MSRVYNLQPQTEHYGCMVDLFG----RAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525 (608)
Q Consensus 452 ~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 525 (608)
|.+ + .+..+.+.|..++. -.+...+|.-+|+++ +..|++.+.+....++...|++++|..+++.++..++
T Consensus 163 mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 977 1 34455665666554 456789999999999 4778999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhCCChHHH-HHHHHHHH
Q 047146 526 EGDGAYILMTNIYSSKNRWKEA-LKLRKKMK 555 (608)
Q Consensus 526 ~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 555 (608)
.++.+...++-.-...|+-.++ .+.+.+.+
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9999999888888888887665 44555554
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=6.9e-06 Score=49.95 Aligned_cols=34 Identities=44% Similarity=0.772 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 425 (608)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.05 E-value=0.00016 Score=60.52 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=84.9
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 047146 413 IFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PL 490 (608)
Q Consensus 413 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 490 (608)
.+++... ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455554 35543 35556667778888888888888888762 2346777888888888888898888888877 44
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 491 VP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 491 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
.| +...+..+...+...|++++|...++++.+..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 45 5667777778888999999999999999999888764
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.03 E-value=8.1e-06 Score=49.23 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 047146 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220 (608)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 220 (608)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999988887
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0013 Score=58.37 Aligned_cols=166 Identities=16% Similarity=0.160 Sum_probs=119.1
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM---IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 440 (608)
..++-+...+|+.+.|...++++...=+.++... ..-+-..|++++|+++++.+.+.. +.|.+++..=+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3444555667778888877777653212222111 223456788999999999998864 345567776666777778
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIH---AKVELAEI 515 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~ 515 (608)
+--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+.-. .+.+.+..
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888888888877 47779999999999999999999999999998 4455 666666666555433 35678899
Q ss_pred HHHHHHhcCCCCCchHH
Q 047146 516 VMENLVRFEPEGDGAYI 532 (608)
Q Consensus 516 ~~~~~~~~~p~~~~~~~ 532 (608)
.+++++++.|.+...+.
T Consensus 213 yy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHhChHhHHHHH
Confidence 99999999996654433
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=0.0001 Score=72.55 Aligned_cols=100 Identities=14% Similarity=0.039 Sum_probs=63.8
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKV 510 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 510 (608)
...+...|++++|+..|.++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 34455667777777777777651 2224556666666777777777777777666 4444 455666666667777777
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHH
Q 047146 511 ELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 511 ~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
++|...+++++++.|+++.....+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 777777777777777766554444
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.5e-05 Score=47.98 Aligned_cols=33 Identities=33% Similarity=0.588 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 424 (608)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=0.0001 Score=56.94 Aligned_cols=94 Identities=24% Similarity=0.245 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 542 (608)
+..+...+...|++++|...+++. ...| +...+..+...+...+++++|...++.+.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677777888888888888876 4444 44667777788888899999999999999988888888889999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 047146 543 RWKEALKLRKKMKERK 558 (608)
Q Consensus 543 ~~~~A~~~~~~m~~~~ 558 (608)
++++|...+++..+.+
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999988876543
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00034 Score=59.16 Aligned_cols=114 Identities=17% Similarity=0.091 Sum_probs=55.6
Q ss_pred cccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHH
Q 047146 439 AGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA----FVWGALLGACKIHAKVEL 512 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~ 512 (608)
.++...+...++.+.++++-.| .....-.+...+...|++++|...|+.. ...||. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555554321111 1122233445555556666666555555 212222 122334455556666666
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 513 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
|...++.. ...+-.+..+..++++|.+.|++++|+..|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 11222333555666666666666666666654
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.94 E-value=0.00015 Score=58.99 Aligned_cols=93 Identities=16% Similarity=0.067 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEG---DGAYILMTN 536 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 536 (608)
+..++..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+++.|...++.+....|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334445555555555555555554 22222 2234445555556666666666666666555553 234555556
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 047146 537 IYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 537 ~~~~~g~~~~A~~~~~~m~~~ 557 (608)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666665544
No 148
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.91 E-value=2.9e-05 Score=55.84 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=45.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...|++++|...++++.+..|+++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999988764
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.87 E-value=2e-05 Score=59.40 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHH
Q 047146 475 AGLIREALDLIKSM-PLVP---DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 550 (608)
.|+++.|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666665 2222 344555566777777777777777777 555665555555667777777777777777
Q ss_pred HHH
Q 047146 551 RKK 553 (608)
Q Consensus 551 ~~~ 553 (608)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 150
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.87 E-value=0.054 Score=56.99 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCC
Q 047146 496 VWGALLGACKIHAKVE---LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 563 (608)
+.+.|+..+.+.++.. +|+.+++......|.+...-..++.+|.-.|-+..|.++++.+.-++|..+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 4456667777777644 6677777777788888877788888888888888888888888766666543
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.85 E-value=4.8e-05 Score=54.85 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC-ChHHHHHHHHHHHhC
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN-RWKEALKLRKKMKER 557 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 557 (608)
++.+|..+...+...|++++|+..++++++.+|+++.+|..++.+|.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56788889999999999999999999999999999999999999999999 799999999988753
No 152
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.035 Score=53.35 Aligned_cols=120 Identities=17% Similarity=0.120 Sum_probs=84.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 443 (608)
+.-+.-+...|+...|.++-.+..-|+-.-|-..+.+++..+++++-..+... +-++..|..++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 44455566778888888888888888888888888999998888877765432 223477888888888888888
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047146 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 503 (608)
+|..+..++. +..-+..|.++|++.+|.+.--+.+ |...+..+...
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~ 300 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKR 300 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 8887776631 1345778888888888877654442 44444444433
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.81 E-value=0.0013 Score=55.50 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=78.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC--hhHHHH
Q 047146 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE----VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ--TEHYGC 467 (608)
Q Consensus 394 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 467 (608)
|..++..+ ..++...+...++.+... .|+. .....+...+...|++++|...|+.+... ...|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 33444444 367777777777777775 3322 23333445677778888888888887773 22222 123445
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047146 468 MVDLFGRAGLIREALDLIKSMPL-VPDAFVWGALLGACKIHAKVELAEIVMENL 520 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 520 (608)
|...+...|++++|+..++.... ...+..+......+...|++++|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777788888888888877622 224455666667788888888888888765
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.80 E-value=0.0005 Score=55.87 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=64.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALL 501 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 501 (608)
++..+...+...|++++|.+.|..+.+...-.+ ....+..+..++.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666666666666666655211111 1234555666777777777777777665 22232 34566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAY 531 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 531 (608)
.++...|+.++|...++++.+..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 777778888888888888888888776443
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.76 E-value=6.9e-05 Score=53.23 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=48.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+...+...|++++|...++++++..|+++..+..++.++.+.|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34567788888888888888888888888888888888888888888888888887544
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00026 Score=64.47 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=82.6
Q ss_pred HHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCH
Q 047146 434 SACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKV 510 (608)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~ 510 (608)
+-..+.+++.+|+..|..++. +.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 457788999999999999987 555 6777778899999999999999988877 66774 55899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHH
Q 047146 511 ELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 511 ~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
++|++.|+++++++|++......|
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHH
Confidence 999999999999999998444443
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.3e-05 Score=44.81 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=24.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 047146 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218 (608)
Q Consensus 188 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 218 (608)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4678888888888888888888888877663
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.69 E-value=0.00055 Score=59.87 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 537 (608)
..+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++.+..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555555666666666666666655 22222 34566666777777777777777777777777777777777777
Q ss_pred HHhCCC--------------hHHHHHHHHHHHhC
Q 047146 538 YSSKNR--------------WKEALKLRKKMKER 557 (608)
Q Consensus 538 ~~~~g~--------------~~~A~~~~~~m~~~ 557 (608)
|...|+ +++|.+++++..+.
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 777665 45566666665543
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00077 Score=61.82 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=85.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCchHHH
Q 047146 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKI---HAKVELAEIVMENLVRFEPEGDGAYIL 533 (608)
Q Consensus 459 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~ 533 (608)
+-|...|-.|...|...|+.+.|...|.+. .+.| ++..+..+..++.. .....++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 337889999999999999999999998887 4444 55666666655433 234578899999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCccCC
Q 047146 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTP 563 (608)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 563 (608)
|+..+...|++.+|...|+.|.+.....+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987665544
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0027 Score=65.34 Aligned_cols=139 Identities=15% Similarity=0.060 Sum_probs=73.8
Q ss_pred CCChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------ccHHHHHHHHHHhH
Q 047146 388 CRDVYSYTAMIVGLAI--HG---KAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHA--------GLVEEGCKHFLDMS 453 (608)
Q Consensus 388 ~~~~~~~~~li~~~~~--~~---~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~--------g~~~~a~~~~~~~~ 453 (608)
..|...|...+.+... .+ ....|..+|++..+ ..|+.. .+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3566777777776443 22 25678888888888 577653 444333322111 11223333333222
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 454 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 21012223344555544445556666666666655 4455555566666666666666666666666666666655
No 161
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=6.2e-05 Score=44.10 Aligned_cols=31 Identities=35% Similarity=0.642 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 422 (608)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
No 162
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.65 E-value=0.059 Score=51.22 Aligned_cols=243 Identities=20% Similarity=0.192 Sum_probs=148.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCChH--HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047146 303 RGQFKEALDIFRRMQGLGLKPDDF--TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380 (608)
Q Consensus 303 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 380 (608)
.|+++.|.+-|+.|... |... -+..|.-...+.|+.+.|.++-+..-..- +.-.-...+.+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 45555666656555431 2111 12222222334555555555544443322 112334456666777777777777
Q ss_pred HHHhhcC-----CCChh--HHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHH
Q 047146 381 GVFRSMK-----CRDVY--SYTAMIVGLA---IHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 381 ~~~~~~~-----~~~~~--~~~~li~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
++++.-. ++++. .--.|+.+-. -.-+...|...-.+..+ +.||.+ .-.....++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 7776443 23332 1122222211 12345566666555555 678765 4444566799999999999999
Q ss_pred HHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM----PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 450 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
+.+- ...|.+..+...+ +.+.|+. ++.-+++. ..+| +..+..++..+....|++..|..-.+.+....
T Consensus 287 E~aW---K~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAW---KAEPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHH---hcCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 9884 4577776654433 3455543 22222222 3455 55677778888899999999999999999988
Q ss_pred CCCCchHHHHHHHHHhC-CChHHHHHHHHHHHhCCC
Q 047146 525 PEGDGAYILMTNIYSSK-NRWKEALKLRKKMKERKV 559 (608)
Q Consensus 525 p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~ 559 (608)
|... .|..|+++-... |+-.++...+-+..+..-
T Consensus 360 pres-~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 360 PRES-AYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred chhh-HHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 8874 899999987755 999999999988776543
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.64 E-value=0.0021 Score=61.02 Aligned_cols=134 Identities=11% Similarity=0.076 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA-CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888889999999988542 3344555555444 33356777799999999884 5567788889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 471 LFGRAGLIREALDLIKSM-PLVPDA----FVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.+.+.++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+..|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 333333 4899999999999999999999999998888754
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.64 E-value=0.0019 Score=56.48 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHH
Q 047146 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD--EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYG 466 (608)
Q Consensus 390 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 466 (608)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+ ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566666677777788888887777776432322 24566666777777777777777777765 233 345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
.+..+|...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666666655544322221 112677888888888888887 5555555554443
No 165
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.61 E-value=0.00067 Score=66.83 Aligned_cols=123 Identities=14% Similarity=0.055 Sum_probs=87.2
Q ss_pred CCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhC--cCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchH
Q 047146 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA--LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190 (608)
Q Consensus 113 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 190 (608)
.+.+...+..++..+....+++.+..++-...... ...-..+..++|+.|.+.|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34455566667777777777777777776665542 2223445568888888888888888888776667777888888
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc
Q 047146 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235 (608)
Q Consensus 191 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 235 (608)
|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888776666666667766666666554
No 166
>PRK15331 chaperone protein SicA; Provisional
Probab=97.61 E-value=0.002 Score=53.77 Aligned_cols=91 Identities=10% Similarity=-0.016 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
-....-+...|++++|..+|+-+ -..| +...|..|...|...++++.|...+..+..+.++++.++...+..|...|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34455566889999999999887 2233 677788888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q 047146 544 WKEALKLRKKMKE 556 (608)
Q Consensus 544 ~~~A~~~~~~m~~ 556 (608)
.+.|+..|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.61 E-value=0.0011 Score=65.40 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=84.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGR 474 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 474 (608)
....+...|++++|+..|++..+. .| +...|..+..++...|++++|+..++.+.. +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 355677889999999999999984 55 456888888899999999999999999987 345 57788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047146 475 AGLIREALDLIKSM-PLVPDAFVWGALLGAC 504 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 504 (608)
.|++++|+..|++. .+.|+.......+..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999998 6667655555554333
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.60 E-value=0.00075 Score=58.77 Aligned_cols=94 Identities=14% Similarity=-0.092 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
....|..++..+...|++++|+..|++. .+.|+ ..+|..+...+...|++++|...++++.+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3455667777777888888888888877 33332 347788888899999999999999999999998888888888
Q ss_pred HHHH-------hCCChHHHHHHHHHH
Q 047146 536 NIYS-------SKNRWKEALKLRKKM 554 (608)
Q Consensus 536 ~~~~-------~~g~~~~A~~~~~~m 554 (608)
.+|. +.|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888666655544
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.0008 Score=61.34 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=84.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcC
Q 047146 399 VGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAG 476 (608)
Q Consensus 399 ~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 476 (608)
.-+.+.++|.+|+..|.+.++ +.| |.+-|..=..+|++.|.++.|++-.+..+. +.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 346788999999999999999 566 556777778899999999999888887765 5664 688999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047146 477 LIREALDLIKSM-PLVPDAFVWGALLGAC 504 (608)
Q Consensus 477 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 504 (608)
++++|++.|++. .+.|+-.+|..=+...
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999999998 8899877776655443
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.54 E-value=0.0012 Score=50.58 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 047146 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472 (608)
Q Consensus 394 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 472 (608)
|..+...+...|++++|...+++..+. .|+ ...+..+...+...+++++|.+.+...... .+.+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence 344445555555666666665555543 222 234444444555555555555555554431 111223344444444
Q ss_pred HhcCCHHHHHHHHHh
Q 047146 473 GRAGLIREALDLIKS 487 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~ 487 (608)
...|++++|...++.
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 444444444444433
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.51 E-value=0.016 Score=49.03 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=100.0
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 047146 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP---DAFVW 497 (608)
Q Consensus 422 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 497 (608)
..|+...-..+..+..+.|+..+|...|..... --+..|....-.+.++....+++..|...++.+ ...| .+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 467777677788888888999999998888877 234457777788888888888998888888877 2222 23344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..+.+.+...|.+..|+..|+.+....|+.. .....+..+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4566788889999999999999988887753 666677778889988887766665544
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.51 E-value=0.00034 Score=49.61 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=48.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 468 MVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456777888888888888888 5556 556778888888899999999999999999888864
No 173
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.51 E-value=0.00038 Score=50.76 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=51.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
..+.+.++++.|.+.++++++.+|+++..+...+.+|.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5678889999999999999999999999999999999999999999999999886554
No 174
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.49 E-value=0.19 Score=53.09 Aligned_cols=184 Identities=11% Similarity=0.045 Sum_probs=101.4
Q ss_pred HccCCchHHHh------hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHH
Q 047146 66 SLSRGNEIENL------SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138 (608)
Q Consensus 66 ~~~g~~~~A~~------~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 138 (608)
.+.|+.++|.. ..+..|..+...+-.+|...+..++ ..+|++.... -|+..-...++.++.+.+++.+-.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777776 2333456677777777777888877 8888777653 4666677777777777776655544
Q ss_pred HHHHHHHhCcCCcHhHHHHHHHHHHhcCC----------HHHHHHHhcccCCCC-CCCCcchHHHHHHHHHhCCCchHHH
Q 047146 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGL----------IKAVHKLFHFRQHPQ-AQRDLVSWTTLIQAYVKMDYPTEAI 207 (608)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~ 207 (608)
+--++-+ .++-+++.+-++++.+...-. +.-|.+.++.+.+.. .--+..-...-...+-..|.+++|+
T Consensus 132 aa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 132 AALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 4444444 233445555555555544321 123444444433322 1111111112223344566777777
Q ss_pred HHHHH-HHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHcc
Q 047146 208 LSFFD-MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252 (608)
Q Consensus 208 ~~~~~-m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 252 (608)
+++.. .-+.-..-+...-+--+..+...+++.+..++-.++...+
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 77733 2222222233333445556666777777777777777664
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.11 Score=49.98 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 506 (608)
.+.+..+.-|...|....|.++-++. .+ |+...|...+.+|+..++|++-.++... +..+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35566677778889988887765544 44 8888999999999999999988887654 3356788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
.|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888873 3467788899999999998775544
No 176
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.13 Score=52.68 Aligned_cols=236 Identities=14% Similarity=0.062 Sum_probs=116.4
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC-CCC--------CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 047146 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP-QAQ--------RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220 (608)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 220 (608)
|.+..|..|.....+.-.++-|+..|-+.... |++ .+...-.+=|.+| -|++++|.++|-+|-++.+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh--
Confidence 66677777777666666777777776554321 110 0000011112222 3677777777777644332
Q ss_pred CHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCC--CCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHH
Q 047146 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL--SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298 (608)
Q Consensus 221 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 298 (608)
.+....+.|++-...++++.- |-+. .--...++.+...+.....+++|.+.|..-.. -...+.
T Consensus 766 -------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~e 830 (1189)
T KOG2041|consen 766 -------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIE 830 (1189)
T ss_pred -------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHH
Confidence 233444555555444443321 1111 00123455566666666666666665544321 112334
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047146 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378 (608)
Q Consensus 299 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 378 (608)
++.+..++++-..+... ++-+....-.+..++.+.|.-++|.+.+-.. +.+ .+.++.+...+++.+
T Consensus 831 cly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHHHHHHH
Confidence 44444444443333332 2334445555666666777766666554322 111 244556666677777
Q ss_pred HHHHHhhcCCCChhHHHH--------------HHHHHHHcCChHHHHHHHHHHH
Q 047146 379 AFGVFRSMKCRDVYSYTA--------------MIVGLAIHGKAWKALDIFSEMS 418 (608)
Q Consensus 379 A~~~~~~~~~~~~~~~~~--------------li~~~~~~~~~~~A~~~~~~m~ 418 (608)
|.++-++..-|.+.+.-+ -|..+.+.|+.-+|-+++.+|.
T Consensus 897 avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 897 AVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 777776665554443322 1223444555555566666654
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.44 E-value=0.00051 Score=51.72 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=43.1
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIE-PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREA 481 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 481 (608)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+ ..| +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46667777777776664221 1233444456666667777777666665 21 122 223333446666666666666
Q ss_pred HHHHHh
Q 047146 482 LDLIKS 487 (608)
Q Consensus 482 ~~~~~~ 487 (608)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666653
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.42 E-value=0.052 Score=51.76 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSMP---L-----VPDAF-VWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
++..++..+.+.|++++|.++|++.. . +.+.. .+...+-.+...||...|...+++.....|.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34445555566666666666665540 0 11111 1222223444556666666666666666554
No 179
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.34 E-value=0.18 Score=49.15 Aligned_cols=414 Identities=11% Similarity=0.058 Sum_probs=200.6
Q ss_pred ccCCcHHHHHHHHHHHHhCcCCc------HhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHH--HhC
Q 047146 129 QSQSLRVGQQVHAYSMKTALLSN------VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY--VKM 200 (608)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~--~~~ 200 (608)
+.+++.++..+|..+.+..- .+ ....+.++++|-. .+++.....+....+.. | ...|-.+..++ -+.
T Consensus 18 kq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHh
Confidence 34566666666666654321 11 2233455555553 33444433333322211 1 22344443332 355
Q ss_pred CCchHHHHHHHHHHHC--CCCC------------CHhHHHHHHHHhhccCCchHHHHHHHHHHHccCC--CCCchHHHHH
Q 047146 201 DYPTEAILSFFDMCQA--NLRP------------DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN--LSPDVFIHNA 264 (608)
Q Consensus 201 g~~~~a~~~~~~m~~~--~~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~p~~~~~~~ 264 (608)
+.+.+|++.+...... +-+| |-.-=+..+..+...|.+.+|+.+++.+...-+. ..=+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 6666666666555433 2211 1111123445566677777777777666654222 1115666666
Q ss_pred HHHHHHhcCChHH---------------HHHHHccCCCCCh----------hhHHHHHHHHHhc--CChhHHHHHHHHHH
Q 047146 265 LIDMYLKCGNIPS---------------ARKVFDEMPVKNV----------VSWNSMIAGLTHR--GQFKEALDIFRRMQ 317 (608)
Q Consensus 265 li~~~~~~g~~~~---------------A~~~~~~~~~~~~----------~~~~~li~~~~~~--g~~~~A~~~~~~m~ 317 (608)
++-++++.--++- +.-+.++|...+. .....++....-. .+..--.++++...
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 6655554321111 1111111111111 1111111111111 11122233333333
Q ss_pred hCCCCCChHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCC----chhHHHHHHHHhHhcCCHHHHHHHHhhcC--CCC
Q 047146 318 GLGLKPDDFT-LVCVLNSCANIGWLELGKWVHTYLDKNHINT----DGFIGNALVDMYAKCGRIDQAFGVFRSMK--CRD 390 (608)
Q Consensus 318 ~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~ 390 (608)
..-+.|+... ...+...+.. +.+.+..+.+.+....+.+ -...+..++....+.++...|...+.-+. +|+
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 3344555432 2223333322 4455555544443332111 13345666666777788888877776554 333
Q ss_pred hhH-------HHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH---HHHhcccc-HHHHHHHHHHhHh
Q 047146 391 VYS-------YTAMIVGLA----IHGKAWKALDIFSEMSQVGIEPDEV-TFVGVL---SACSHAGL-VEEGCKHFLDMSR 454 (608)
Q Consensus 391 ~~~-------~~~li~~~~----~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll---~~~~~~g~-~~~a~~~~~~~~~ 454 (608)
... -..+-+..+ ..-+...=+.+|+...... .|.. ....++ .-+.+.|. -++|.++++.+.+
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 221 111112222 1122334455666665543 3332 112222 23555565 7788888888876
Q ss_pred hcCCCC-ChhHHHHHHH----HHHhc---CCHH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHH
Q 047146 455 VYNLQP-QTEHYGCMVD----LFGRA---GLIR---EALDLIKSMPLVP----DAFVWGALLGA--CKIHAKVELAEIVM 517 (608)
Q Consensus 455 ~~~~~p-~~~~~~~l~~----~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~~~~~~a~~~~ 517 (608)
+.| |..+-|.... .|..+ ..+. +-..++++.++.| +...-+.|..| ...+|++.++.-.-
T Consensus 409 ---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 409 ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred ---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 333 4433333221 22211 1122 2233444556665 33455555544 56899999998888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 518 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.-+.+..| ++.+|..++-++....++++|..++..++
T Consensus 486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 88888899 77899999999999999999999998764
No 180
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.011 Score=56.51 Aligned_cols=263 Identities=14% Similarity=0.065 Sum_probs=120.1
Q ss_pred HHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hHHHHHHHHHHhccCCh
Q 047146 266 IDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD-DFTLVCVLNSCANIGWL 341 (608)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~ 341 (608)
-+.+.+..++..|+..+.... ..+..-|..-...+..-|++++|.--.+.-.+. +|. ..+..-.-+++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 344555666666666665433 334455666666666666666666555444332 222 12333333334444444
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC-----CCChhHHHHH-HHHHHHcCChHHHHHHHH
Q 047146 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-----CRDVYSYTAM-IVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l-i~~~~~~~~~~~A~~~~~ 415 (608)
..|.+.++.-. .+ ....|...++.+. +|...+|..+ ...+...|++++|...--
T Consensus 134 i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44444433110 00 0111111111111 0112223222 123444555555555544
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhH-------------HHHHHHHHHhcCCHHHH
Q 047146 416 EMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH-------------YGCMVDLFGRAGLIREA 481 (608)
Q Consensus 416 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~~~l~~~~~~~g~~~~A 481 (608)
...+. .++ ......-..++...++.+.+...|.+..+ +.|+... +..=..-..+.|.+.+|
T Consensus 194 ~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 194 DILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 44432 221 11221112233344555555555555533 3333211 11112233455666666
Q ss_pred HHHHHhC-CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 482 LDLIKSM-PLVP-----DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 482 ~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.+.+.+. ++.| +...|.....+..+.|+.++|+.--+.+.+++|.-...|..-+.++...++|++|.+-+++..
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555 3333 333344444445566666666666666666666666666666666666666666666665554
No 181
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.31 E-value=0.0025 Score=62.91 Aligned_cols=123 Identities=9% Similarity=0.021 Sum_probs=96.6
Q ss_pred cCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC--CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHH
Q 047146 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP--QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225 (608)
Q Consensus 148 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~ 225 (608)
...+......+++......+++.+..++...... ...--..|..++|+.|.+.|..+++++++..=..-|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3455667777888888888888888887765543 11122345679999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhc
Q 047146 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272 (608)
Q Consensus 226 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 272 (608)
+.+|..+.+.|++..|.++...|...+.-. +..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~--~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFD--NPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccC--CchHHHHHHHHHHHh
Confidence 999999999999999999998888765433 555655555556655
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.30 E-value=0.0034 Score=59.60 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR-AGLIREALDLIKSM--PLVPDAFVWGALLGA 503 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 503 (608)
.+|..++..+.+.+..+.|.++|.++.+. -..+..+|-..+.+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888899999999999999999999863 22234555555555344 56677799999998 444578889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEGD---GAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+...++.+.|+.+|++++..-|... ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998866654 58999999999999999999999988754
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.26 E-value=0.014 Score=60.22 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=98.8
Q ss_pred CCCCHHHHHHHHHHHhcc-----ccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHHh
Q 047146 422 IEPDEVTFVGVLSACSHA-----GLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRA--------GLIREALDLIKS 487 (608)
Q Consensus 422 ~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 487 (608)
.+.|...|..++.+.... ++.+.|..+|+++.+ ..|+ ...|..+..++... ++...+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 456778898888875432 347789999999987 5675 44555544444322 123444555544
Q ss_pred C---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 488 M---P-LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 488 ~---~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
. + ...++..+.++.-.+...|++++|...++++.+++|+ ...|..++.+|...|+.++|...+++....+..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3 1 2335677887777777789999999999999999995 679999999999999999999999998765543
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.00038 Score=49.92 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWG 498 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 498 (608)
..|++++|.++|+.+... .+-+...+..++.+|.+.|++++|.++++++ ...|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 456666666666666552 2224555555666666666666666666666 3445543333
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.24 E-value=0.0054 Score=47.27 Aligned_cols=80 Identities=15% Similarity=0.035 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChHHHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCchhHH
Q 047146 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGL-KPDDFTLVCVLNSCANIG--------WLELGKWVHTYLDKNHINTDGFIG 363 (608)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 363 (608)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+.....+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566677777999999999999999999 999999999999887654 234556778888899999999999
Q ss_pred HHHHHHhHh
Q 047146 364 NALVDMYAK 372 (608)
Q Consensus 364 ~~li~~~~~ 372 (608)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887765
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.18 E-value=0.0033 Score=58.50 Aligned_cols=88 Identities=15% Similarity=0.075 Sum_probs=44.7
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHh
Q 047146 469 VDLFGRAGLIREALDLIKSM-PLVPDA----FVWGALLGACKIHAKVELAEIVMENLVRFEPEGD---GAYILMTNIYSS 540 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 540 (608)
+..+.+.|++++|...|+.. ...|+. ..+--+..++...|++++|...|+.+.+..|+++ ..+..++.+|..
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 33334445555555555554 222321 2333444555556666666666666665555533 334444555556
Q ss_pred CCChHHHHHHHHHHHh
Q 047146 541 KNRWKEALKLRKKMKE 556 (608)
Q Consensus 541 ~g~~~~A~~~~~~m~~ 556 (608)
.|++++|.++++++.+
T Consensus 230 ~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 230 KGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665554
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.17 E-value=0.0085 Score=52.13 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD--EVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++...+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555556666666666666554321211 12455555555555666666655555544
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.16 E-value=0.008 Score=46.37 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccc--------cHHHHHHHHHHhHhhcCCCCChhHH
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGI-EPDEVTFVGVLSACSHAG--------LVEEGCKHFLDMSRVYNLQPQTEHY 465 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 465 (608)
...|..+...+++...-.+|+.+.+.|+ .|+..+|+.++.+..+.. ++-+...+|+.+.. .+++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHH
Confidence 3456666667888888888999988888 888889998888766542 34556777888877 5788888888
Q ss_pred HHHHHHHHh
Q 047146 466 GCMVDLFGR 474 (608)
Q Consensus 466 ~~l~~~~~~ 474 (608)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888777654
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.14 E-value=0.071 Score=49.28 Aligned_cols=170 Identities=14% Similarity=0.086 Sum_probs=101.3
Q ss_pred HHHhHhcCCHHHHHHHHhhcCC--CCh-hH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc
Q 047146 367 VDMYAKCGRIDQAFGVFRSMKC--RDV-YS---YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE--VTFVGVLSACSH 438 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 438 (608)
...+...|++++|.+.|+.+.. |+. .. .-.++.++.+.+++++|...+++..+. .|+. ..+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3444566788888888877763 222 11 223456677788888888888888774 3432 233333333321
Q ss_pred --cc---------------c---HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 047146 439 --AG---------------L---VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498 (608)
Q Consensus 439 --~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 498 (608)
.+ + ...|.+.|+.+++ -|=...-..+|...+..+...- ..--.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~l-a~~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRL-AKYEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHH-HHHHH
Confidence 11 1 2233344444444 2222223344444333331000 00111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEGD---GAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.+..-|.+.|.+..|..-++.+++..|+.+ .+...++.+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345668899999999999999999988875 467788899999999999999887653
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.12 E-value=0.0011 Score=47.64 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHA-KVELAEIVMENLVRFEP 525 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 525 (608)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|.+.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456667777777777777777777776 4445 4557777777778887 68888888888888776
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.10 E-value=0.0099 Score=47.66 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 047146 469 VDLFGRAGLIREALDLIKSM---PLVPD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPE---GDGAYILMTNIYSS 540 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 540 (608)
..++-..|+.++|+.+|++. +.... ...+-.+.+.+...|++++|..++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455556666666666554 22211 223444556666666666666666666666565 44444555566666
Q ss_pred CCChHHHHHHHHHH
Q 047146 541 KNRWKEALKLRKKM 554 (608)
Q Consensus 541 ~g~~~~A~~~~~~m 554 (608)
.|+.++|++.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 67766666665443
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.08 E-value=0.031 Score=46.63 Aligned_cols=86 Identities=8% Similarity=0.025 Sum_probs=39.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGR 474 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 474 (608)
+..-+.+.|++++|..+|+-+.. +.|.. .-|..|..+|...|++++|+..|..... +.| +...+-.+..++..
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHH
Confidence 33334445555555555555544 33322 2334444444445555555555555543 122 34444444555555
Q ss_pred cCCHHHHHHHHHh
Q 047146 475 AGLIREALDLIKS 487 (608)
Q Consensus 475 ~g~~~~A~~~~~~ 487 (608)
.|+.+.|.+-|+.
T Consensus 116 lG~~~~A~~aF~~ 128 (157)
T PRK15363 116 CDNVCYAIKALKA 128 (157)
T ss_pred cCCHHHHHHHHHH
Confidence 5555555544443
No 193
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.018 Score=54.93 Aligned_cols=154 Identities=20% Similarity=0.176 Sum_probs=96.7
Q ss_pred HhHhcCCHHHHHHHHhhcCCCChh-HHHHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------------
Q 047146 369 MYAKCGRIDQAFGVFRSMKCRDVY-SYTAMIVG--LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV------------- 432 (608)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l------------- 432 (608)
++.-.|+.++|...-..+.+-|.. .+...+.+ +-...+.+.|...|++... ..|+...-...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhh
Confidence 444556666666555544433222 22222322 3345666777777776665 34444322111
Q ss_pred HHHHhccccHHHHHHHHHHhHhh--cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH---HHHHH
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRV--YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALL---GACKI 506 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~---~~~~~ 506 (608)
.+-..+.|.+..|.+.+.+.+.. .+..|+...|.....+..+.|+.++|+.-.++. .+ |+....+++ .++..
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHH
Confidence 22345779999999999988651 123345566777778888999999999988887 43 444333433 45677
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 047146 507 HAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~ 526 (608)
.+++++|.+-++++.+...+
T Consensus 334 le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 89999999999999988666
No 194
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.45 Score=49.46 Aligned_cols=338 Identities=14% Similarity=0.031 Sum_probs=168.6
Q ss_pred HCCCCCCceeHH-----HHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCH--HHHHHHhcc-cCCC
Q 047146 110 IKGLLPNTYTLP-----YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI--KAVHKLFHF-RQHP 181 (608)
Q Consensus 110 ~~g~~p~~~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~-m~~~ 181 (608)
.-|+..+..-|. .+|.-+...+.+..|.++-..+...-... ..++......+.+..+. +++.+..++ +...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555444443 44556667778888888776654321111 46677777777766433 333333333 2221
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC----CCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCC
Q 047146 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR----PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257 (608)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p 257 (608)
.-...+|..+.+-..+.|+++-|..+++.=...+-. .+..-+...+.-+...|+.+...+++-.+.+.-
T Consensus 504 --~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~----- 576 (829)
T KOG2280|consen 504 --LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL----- 576 (829)
T ss_pred --CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-----
Confidence 145667888888888899999998887653222211 122334455566666777776666665555431
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCC-CChhhHHHHHHHHHhcCChhHHHHHHH--HHH----hCCCCCChHHHHH
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFR--RMQ----GLGLKPDDFTLVC 330 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~----~~g~~p~~~t~~~ 330 (608)
+...+...+ .+...|..+|..... .|..+ +..+.+.++-.+++..|. ... ..|..|+ ...
T Consensus 577 ~~s~l~~~l------~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~ 643 (829)
T KOG2280|consen 577 NRSSLFMTL------RNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKT 643 (829)
T ss_pred HHHHHHHHH------HhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHH
Confidence 111111111 123334444433321 11111 111122222222222221 100 0122233 223
Q ss_pred HHHHHhccCChHHHHH----------HHHHHH-HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 047146 331 VLNSCANIGWLELGKW----------VHTYLD-KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399 (608)
Q Consensus 331 ll~~~~~~~~~~~a~~----------~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 399 (608)
.-.+|++........+ +...+. +.|......+.+--+.-+...|+..+|.++-.+..-||-..|---+.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~ 723 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLT 723 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHH
Confidence 3344444333221111 111111 12222222233334444555677777777777777777777777777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHH
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 479 (608)
+++..+++++-+++-+.+. .+.-|.-++.+|.+.|+.++|.+++.+... .. -.+.+|.+.|++.
T Consensus 724 aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---l~-------ekv~ay~~~~~~~ 787 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---LQ-------EKVKAYLRVGDVK 787 (829)
T ss_pred HHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---hH-------HHHHHHHHhccHH
Confidence 7777777766655544332 134555667777777777777766655422 11 3566677777777
Q ss_pred HHHHH
Q 047146 480 EALDL 484 (608)
Q Consensus 480 ~A~~~ 484 (608)
+|.++
T Consensus 788 eAad~ 792 (829)
T KOG2280|consen 788 EAADL 792 (829)
T ss_pred HHHHH
Confidence 66654
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.05 E-value=0.0058 Score=58.06 Aligned_cols=256 Identities=13% Similarity=0.021 Sum_probs=145.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChH----HHHHHHHHHhccCChHHHHHHHHHHH--H--cCCCC-chhHHHHHHHHh
Q 047146 300 LTHRGQFKEALDIFRRMQGLGLKPDDF----TLVCVLNSCANIGWLELGKWVHTYLD--K--NHINT-DGFIGNALVDMY 370 (608)
Q Consensus 300 ~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~~-~~~~~~~li~~~ 370 (608)
+++.|+....+.+|+..++.| .-|.. .|..+-.+|.-.+++++|.+++..=+ . .|-.. .......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 567777777777777777766 33333 34444455566667777776654311 0 11000 011112233333
Q ss_pred HhcCCHHHHHHHHhhcC-------CC--ChhHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH---
Q 047146 371 AKCGRIDQAFGVFRSMK-------CR--DVYSYTAMIVGLAIHGK--------------------AWKALDIFSEMS--- 418 (608)
Q Consensus 371 ~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m~--- 418 (608)
--.|.+++|.-.-.+-. .+ ....+-.+...|...|+ .+.|.++|.+-.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555543322211 00 11223333444433321 233444544322
Q ss_pred -HCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHh---hcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 047146 419 -QVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSR---VYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM---- 488 (608)
Q Consensus 419 -~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 488 (608)
+.|-.. ....|..+.+.|.-.|+++.|+..++.-.. .+|-.. ....+..+..++.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 112111 123566677777778899999876664322 233332 3456778888889999999998888754
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 489 ---PL-VPDAFVWGALLGACKIHAKVELAEIVMENLVRF----E--PEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 489 ---~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+. .....+.-+|...|.-..+++.|+.++.+=+.+ + .....+|.+|+++|...|..++|+.+.+.-++
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 224556667788888888899998887765543 2 22335788999999999999999888776653
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.04 E-value=0.044 Score=55.31 Aligned_cols=193 Identities=18% Similarity=0.173 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhc
Q 047146 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386 (608)
Q Consensus 307 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 386 (608)
-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|.++|..- |.+ |..+++|.....++.|.+++..-
T Consensus 617 L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcC
Confidence 3445556777788877776543 34456667777777766532 211 34455566555666666555432
Q ss_pred CC--------------CChhHHHHHHHHHHHcCChHHHHHHHHH------HHHCCCC---CCHHHHHHHHHHHhccccHH
Q 047146 387 KC--------------RDVYSYTAMIVGLAIHGKAWKALDIFSE------MSQVGIE---PDEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 387 ~~--------------~~~~~~~~li~~~~~~~~~~~A~~~~~~------m~~~g~~---p~~~~~~~ll~~~~~~g~~~ 443 (608)
.. .++.-=.+....+...|+.++|..+.-+ +.+-+-+ .+..+...+...+.+...+.
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 21 0111112233344556666666554211 1111112 23345555555566667777
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-----------HHHHHHHHHHcCCHH
Q 047146 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFV-----------WGALLGACKIHAKVE 511 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-----------~~~l~~~~~~~~~~~ 511 (608)
.|.++|.++-. ...++++....+++.+|..+-++. ...||... |.-.-.++.+.|+..
T Consensus 765 LAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~ 834 (1081)
T KOG1538|consen 765 LAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQR 834 (1081)
T ss_pred hHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchH
Confidence 78888877744 245678888888999998888887 34444321 112224556666666
Q ss_pred HHHHHHHHHH
Q 047146 512 LAEIVMENLV 521 (608)
Q Consensus 512 ~a~~~~~~~~ 521 (608)
+|.++++++.
T Consensus 835 EA~~vLeQLt 844 (1081)
T KOG1538|consen 835 EAVQVLEQLT 844 (1081)
T ss_pred HHHHHHHHhh
Confidence 6666666554
No 197
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.02 E-value=0.15 Score=49.45 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=94.8
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMKCR-------DVYSYTAMIVGLAI---HGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 434 (608)
.++-.|....+++.-.++++.+... ....--...-++-+ .|+.++|+.++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566777777777777776642 11111122334445 6788888888888665556677777777766
Q ss_pred HHhc---------cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC-HH---HHHHHH---HhC-------CCC
Q 047146 435 ACSH---------AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL-IR---EALDLI---KSM-------PLV 491 (608)
Q Consensus 435 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~-------~~~ 491 (608)
.|-. ....++|+..|.+.-+ +.|+...--.++-.+.-.|. .+ +..++- ... .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5422 2247778877776643 45553322222222333332 11 222222 111 122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
.|--.+.+++.++.-.|+++.|.+..+++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 355566788899999999999999999999987664
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.00 E-value=0.12 Score=43.88 Aligned_cols=97 Identities=14% Similarity=-0.011 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CChhHHHHH
Q 047146 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RDVYSYTAM 397 (608)
Q Consensus 323 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 397 (608)
|+...-..+..+....|+..+|...+++...--+..|..+...+.++....+++..|...++.+.+ ..+..--.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 444444444444444444444444444444433444444444444444444444444444444332 111222233
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 047146 398 IVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 398 i~~~~~~~~~~~A~~~~~~m~~ 419 (608)
...|...|++.+|..-|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 3444444444444444444444
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.99 E-value=0.00069 Score=40.37 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhCCChHHHHH
Q 047146 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549 (608)
Q Consensus 517 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 549 (608)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.11 Score=46.79 Aligned_cols=167 Identities=13% Similarity=0.059 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCC----------CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHH
Q 047146 262 HNALIDMYLKCGNIPSARKVFDEMPV----------KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331 (608)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 331 (608)
+++|.+.+.-..-+++-...++.-.. +-....+.++..+.-.|.+.-....+.+.++..-+.+....+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555544444444444443221 11234466777777788888888899998887656677778888
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCch-----hHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH
Q 047146 332 LNSCANIGWLELGKWVHTYLDKNHINTDG-----FIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAI 403 (608)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 403 (608)
.+.-.+.|+.+.+...++...+..-..+. .+.......|.-.+++..|...|.+++. .|+..-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888999999999999877664333333 3333344456677888888888888774 345555555555666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIEPDEVTFV 430 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~p~~~~~~ 430 (608)
.|+..+|++.++.|.+. .|...+-+
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 78888999999998884 55554444
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.05 Score=48.79 Aligned_cols=132 Identities=15% Similarity=0.039 Sum_probs=61.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCC----CCChhHHHHHHHH
Q 047146 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL----QPQTEHYGCMVDL 471 (608)
Q Consensus 396 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~~l~~~ 471 (608)
.++..+.-.|.+.-.+.++.+.++...+-+......+.+.-.+.||.+.|...|++..+..+. +-...+.......
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 344444445555556666666666443444555555666666666666666666655442111 1111122222233
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 472 FGRAGLIREALDLIKSMPL--VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
|.-+.++.+|...+.++.. ..|+...|.-.-...-.|+..+|.+.++.+.+..|..
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3444455555555555411 1133333322222233455555555555555555543
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.92 E-value=0.061 Score=54.37 Aligned_cols=192 Identities=15% Similarity=0.220 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHcc
Q 047146 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284 (608)
Q Consensus 205 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (608)
+.+.-+++|.+.|-.|+.... ...|+-.|++.+|-++|.+. |.. +..+.+|.....++.|.+++..
T Consensus 618 ~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e--------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE--------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch--------hhHHHHHHHHHHHHHHHHHhhc
Confidence 333445666667766766543 33455667777777766432 211 2334445555555555555433
Q ss_pred CCC--------------CChhhHHHHHHHHHhcCChhHHHHHHHH------HHhCCC---CCChHHHHHHHHHHhccCCh
Q 047146 285 MPV--------------KNVVSWNSMIAGLTHRGQFKEALDIFRR------MQGLGL---KPDDFTLVCVLNSCANIGWL 341 (608)
Q Consensus 285 ~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g~---~p~~~t~~~ll~~~~~~~~~ 341 (608)
-.. .|+.--.+-...+...|+.++|+.+.-+ +.+-+- ..+..+...+..-+.+...+
T Consensus 684 g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred CChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcccc
Confidence 220 0110011222334455666666554321 111111 22334444444445566677
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CChh-----------HHHHHHHHHHHcCChH
Q 047146 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVY-----------SYTAMIVGLAIHGKAW 408 (608)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-----------~~~~li~~~~~~~~~~ 408 (608)
..|.++|..+-.. ..++++....+++.+|..+-++.++ +|+. -|...-++|.+.|+..
T Consensus 764 gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~ 834 (1081)
T KOG1538|consen 764 GLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQR 834 (1081)
T ss_pred chHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchH
Confidence 7777777766443 4577778888888888888887775 2321 1222334555556666
Q ss_pred HHHHHHHHHHH
Q 047146 409 KALDIFSEMSQ 419 (608)
Q Consensus 409 ~A~~~~~~m~~ 419 (608)
+|..+++++..
T Consensus 835 EA~~vLeQLtn 845 (1081)
T KOG1538|consen 835 EAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHhhh
Confidence 66666655543
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.88 E-value=0.013 Score=51.35 Aligned_cols=96 Identities=16% Similarity=0.264 Sum_probs=64.3
Q ss_pred HHHHhhc--CCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 047146 380 FGVFRSM--KCRDVYSYTAMIVGLAIH-----GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA------------- 439 (608)
Q Consensus 380 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 439 (608)
...|+.. ..++-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 356777777777777643 56666777788888888888888888888876542
Q ss_pred ---ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC
Q 047146 440 ---GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476 (608)
Q Consensus 440 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 476 (608)
.+.+-|+++++.|.. +|+-||.+++..+++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhcccc
Confidence 233446666666666 566666666666666665544
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.88 E-value=0.0039 Score=45.32 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=50.3
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 047146 469 VDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 531 (608)
-..|.+.+++++|.++++.+ ...| +...|......+...|++++|.+.++.+.+..|+++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 35677888889998888888 5555 556777777888899999999999999999999876443
No 205
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.87 E-value=0.048 Score=52.01 Aligned_cols=118 Identities=10% Similarity=0.058 Sum_probs=73.8
Q ss_pred cHHHHHHHHHHhHhhcC--CCCC--hhHHHHHHHHHHhc-CCHHHHHHHHHhC------CCCC--CHHHHHHHHHHHHHc
Q 047146 441 LVEEGCKHFLDMSRVYN--LQPQ--TEHYGCMVDLFGRA-GLIREALDLIKSM------PLVP--DAFVWGALLGACKIH 507 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~------~~~p--~~~~~~~l~~~~~~~ 507 (608)
++++|.+.+......+. -.|+ ...+..+...|... |++++|++.|++. .-.+ -..++..+...+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 55555555555544111 0111 23445566677777 8888888888776 1122 123556667889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-------chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 508 AKVELAEIVMENLVRFEPEGD-------GAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
|++++|..+++++.....+++ ..+...+-++...|+...|.+.+++.....
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999987543222 234556667888999999999999987654
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.80 E-value=0.35 Score=44.73 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=12.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGL 319 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~ 319 (608)
...+...|++++|++.|+++...
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~ 61 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNR 61 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 33444555566666666555553
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.80 E-value=0.025 Score=45.38 Aligned_cols=91 Identities=15% Similarity=0.047 Sum_probs=51.7
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCC--HhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHh
Q 047146 194 IQAYVKMDYPTEAILSFFDMCQANLRPD--GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271 (608)
Q Consensus 194 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 271 (608)
..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++......++..-+..+...+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445566777777777777777665443 23455666667777777777777777766532210012222223334555
Q ss_pred cCChHHHHHHHcc
Q 047146 272 CGNIPSARKVFDE 284 (608)
Q Consensus 272 ~g~~~~A~~~~~~ 284 (608)
.|+.++|++.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 6666666655533
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.78 E-value=0.0068 Score=59.38 Aligned_cols=65 Identities=17% Similarity=0.015 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA---YILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+...|..+..+|...|++++|...++++++++|++... |..++.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44566666666666666666666666666666666533 666666666666666666666666553
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.77 E-value=0.037 Score=51.63 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=63.5
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP----DAFVWGALL 501 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~ 501 (608)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ ...| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444455677777777777766321111 1245556677777777777777777766 2223 233444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 667788888888888888888888875
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.74 E-value=0.014 Score=51.09 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=59.6
Q ss_pred CCChhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC----------------ChHHHH
Q 047146 287 VKNVVSWNSMIAGLTH-----RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG----------------WLELGK 345 (608)
Q Consensus 287 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~~~~a~ 345 (608)
.++..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||..+-+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555543 3566666677777777777777777777777655422 345677
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047146 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGR 375 (608)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (608)
+++++|...|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 777788888888888877777777765443
No 211
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.084 Score=48.80 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=81.1
Q ss_pred CC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CHHH
Q 047146 423 EP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG---LIREALDLIKSM-PLVP-DAFV 496 (608)
Q Consensus 423 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~ 496 (608)
.| |...|..|..+|...|+.+.|...|....+- -.++...+..+..++.... ...++..+|+++ ...| |..+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 44 5669999999999999999999999998773 2335666666766665433 456788899988 5566 5566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 497 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
...|...+...|++.+|...++.+++..|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 66677889999999999999999999988876
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.71 E-value=0.003 Score=40.41 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047146 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536 (608)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 536 (608)
.+|..+..++...|++++|++.++++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778889999999999999999999999999988877764
No 213
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.05 Score=52.26 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 497 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+..+...+.+.+++..|++..+++++++|+|......-+.+|...|+++.|+..|+++.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555555555555555555555555554
No 214
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.63 E-value=0.26 Score=39.39 Aligned_cols=141 Identities=12% Similarity=0.155 Sum_probs=88.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 047146 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480 (608)
Q Consensus 401 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (608)
+.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 34567778888888777653 24445666665555555555566666665442222 23445555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 481 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
...-+-.++ .+.......+......|+-+.-..++..+.+.+..+|+....++.+|.+.|+..++.+++++.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555444442 355666777888899999999999999988777778889999999999999999999999999999875
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.53 E-value=0.19 Score=45.12 Aligned_cols=141 Identities=15% Similarity=0.172 Sum_probs=71.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIE-P-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 474 (608)
....+.+.|++++|...|+++...-.. | -......++.++.+.|+++.|...++...+.+.-.|... +...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHH
Confidence 344455666677777777766654111 1 112444555566666667776666666666443333221 1111111111
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-----------------hHHHHHHH
Q 047146 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG-----------------AYILMTNI 537 (608)
Q Consensus 475 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~ 537 (608)
........ ......+...+|...++.+++..|+++. .-..++..
T Consensus 90 ~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0012223345666667777777777652 33457888
Q ss_pred HHhCCChHHHHHHHHHHHhC
Q 047146 538 YSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 538 ~~~~g~~~~A~~~~~~m~~~ 557 (608)
|.+.|.+.-|..-++.+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999853
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=1.3 Score=46.24 Aligned_cols=326 Identities=13% Similarity=0.081 Sum_probs=180.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHc-cCCCCCchHHHHHHHHHHH
Q 047146 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN-HFNLSPDVFIHNALIDMYL 270 (608)
Q Consensus 192 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~p~~~~~~~li~~~~ 270 (608)
.+|.-++..+.+..|+++-..+...-..- ...|.....-+.+..+.. -..+++.+.+. +.... +...|..+..-..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLT-PGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCC-CceeHHHHHHHHH
Confidence 45677777888888888777764322222 445555555555443221 12222222221 11112 4456677777777
Q ss_pred hcCChHHHHHHHccCCCC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChH
Q 047146 271 KCGNIPSARKVFDEMPVK--------NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342 (608)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 342 (608)
.+|+.+-|..+++.=+.. +..-+..-+.-....|+.+-...++-.+... .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 788888888887654421 1222344455566667766666666555442 1111121111 2233
Q ss_pred HHHHHHHHHHH-cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhh-c------CCCChhHHHHHHHHHHHcCCh---HH--
Q 047146 343 LGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAFGVFRS-M------KCRDVYSYTAMIVGLAIHGKA---WK-- 409 (608)
Q Consensus 343 ~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~------~~~~~~~~~~li~~~~~~~~~---~~-- 409 (608)
.|..++.++.+ .+. ..|-+.|-...+. .+...|.. - ..+-.........++.+.... ++
T Consensus 590 ~a~~lY~~~~r~~~~-------~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDR-------ATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhhHHHHHHHHhhch-------hhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 44444444433 221 1122222222222 22222111 0 011222233333444443331 11
Q ss_pred -----HHHHHHHHHH-CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 047146 410 -----ALDIFSEMSQ-VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483 (608)
Q Consensus 410 -----A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 483 (608)
-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-++.. -||...|-.-+.+++..+++++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 2223333332 2333444566666777888899999988777664 3888888888999999999999888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 484 LIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 484 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
+-+... .+.-|.-...+|.+.|+.++|..++-+.- -+...+.+|.+.|++.+|.++--+
T Consensus 737 fAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~--------~l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 737 FAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVG--------GLQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccC--------ChHHHHHHHHHhccHHHHHHHHHH
Confidence 887763 24556667889999999999988876652 222678889999999998876544
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.51 E-value=0.24 Score=44.54 Aligned_cols=163 Identities=11% Similarity=0.061 Sum_probs=95.1
Q ss_pred HHHhHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc
Q 047146 367 VDMYAKCGRIDQAFGVFRSMKC--RD----VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE--VTFVGVLSACSH 438 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 438 (608)
...+...|++++|.+.|+.+.. |+ ....-.++.++.+.|++++|...+++..+. -|+. ..+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 3445566788888888877753 21 234556677788888888888888888774 4433 223322332221
Q ss_pred -------------cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047146 439 -------------AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505 (608)
Q Consensus 439 -------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 505 (608)
.+...+|...|+.+++ -|=......+|...+..+... -...-..+...|.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~-la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNR-LAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1222344444444444 444444555555544444100 0011122456788
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhCCChHHHH
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDG---AYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 548 (608)
+.|.+..|..-++.+++..|+.+. ....++..|.+.|..+.+.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999999998764 5678888999999988554
No 218
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.51 E-value=1.3 Score=45.88 Aligned_cols=254 Identities=13% Similarity=0.076 Sum_probs=142.8
Q ss_pred chHHHh-hCCCCCcchHHHHHH-------------HHHcCCCccHHHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHH
Q 047146 71 NEIENL-SLQNPQVYLYNFIIQ-------------CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136 (608)
Q Consensus 71 ~~~A~~-~~~~~~~~~~~~li~-------------~~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 136 (608)
+++|.+ .-..|....|..+.. +|++.+++..+++..++..-- +...-..=+ -+-.|.+++|
T Consensus 679 ledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~---s~~~q~aei--~~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIH---SKEQQRAEI--SAFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhh---hHHHHhHhH--hhhhcchhHh
Confidence 466665 334455666766554 344555555444444443210 111111111 1234778888
Q ss_pred HHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCC-----CcchHHHHHHHHHhCCCchHHHHHHH
Q 047146 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR-----DLVSWTTLIQAYVKMDYPTEAILSFF 211 (608)
Q Consensus 137 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~ 211 (608)
++++-.+-++. .-|.++.+.|++-...++++. |... -..+|+.+...++....|++|.+.|.
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876665533 345677788888888888766 3321 13457888888887778888888776
Q ss_pred HHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChh
Q 047146 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291 (608)
Q Consensus 212 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 291 (608)
.-... ...+.++.+...+++-+.+-..+ +. +....-.+.+++.+.|.-++|.+.|-+-..|.
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe--~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-- 882 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLARTL-----PE--DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-- 882 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHHHhc-----Cc--ccchHHHHHHHHHhhchHHHHHHHHHhccCcH--
Confidence 64221 12344555544444443333222 22 56677778888888888888888776655443
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047146 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371 (608)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 371 (608)
+-+..|...++|.+|.++-+... -|...|. +.- .+.+++... + + .--|..+.
T Consensus 883 ---aAv~tCv~LnQW~~avelaq~~~----l~qv~tl---iak--------~aaqll~~~---~------~-~eaIe~~R 934 (1189)
T KOG2041|consen 883 ---AAVHTCVELNQWGEAVELAQRFQ----LPQVQTL---IAK--------QAAQLLADA---N------H-MEAIEKDR 934 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcc----chhHHHH---HHH--------HHHHHHhhc---c------h-HHHHHHhh
Confidence 23456777888888888766543 2333332 211 111111110 0 0 12356677
Q ss_pred hcCCHHHHHHHHhhcCC
Q 047146 372 KCGRIDQAFGVFRSMKC 388 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~ 388 (608)
+.|+.-+|-+++.+|.+
T Consensus 935 ka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 935 KAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hcccchhHHHHHHHHhH
Confidence 77887777777777763
No 219
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.48 E-value=1.6 Score=48.10 Aligned_cols=112 Identities=14% Similarity=-0.004 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 472 (608)
.|.+...-+.+...+++|.-.|+..-+ ..-.+.++..+|++.+|..+...+.. +-.--..+-..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHH
Confidence 333444444455566666555554322 12235566666777777666555432 1111112224566667
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047146 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 520 (608)
...++.-+|-++..+....|.. .+..+++...+++|.++....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 7777777777776666333322 233455666677776665544
No 220
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.48 E-value=0.044 Score=52.34 Aligned_cols=153 Identities=10% Similarity=-0.001 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH----HHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhh---cCC-CCChh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEM----SQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRV---YNL-QPQTE 463 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m----~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~ 463 (608)
.|..+...|.-.|+++.|+..-+.= ++-|-+.. ...+..+.+++.-.|+++.|.+.|+....- .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4455555555667777776654332 22232222 236777777888888888888877765330 111 12334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC----Cc
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM--------PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF--EPEG----DG 529 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~----~~ 529 (608)
...+|...|.-..++++|+.++.+- ...-....+.+|..++...|..++|..+.++.++. ...+ ..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 4556777777777888888776653 12235567788888888888888888887776654 2222 22
Q ss_pred hHHHHHHHHHhCCChH
Q 047146 530 AYILMTNIYSSKNRWK 545 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~ 545 (608)
....+.+.-...|..+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 3445555555555544
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.40 E-value=0.0067 Score=44.76 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 495 FVWGALLGACKIHAKVELAEIVMENLVRF----EPEG---DGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.+++.+...+...|++++|+..+++++++ +++. ..++..++.+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666667777777777777777777654 2221 2467788888888888888888887764
No 222
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.26 E-value=3.9 Score=48.85 Aligned_cols=313 Identities=12% Similarity=0.048 Sum_probs=160.5
Q ss_pred HHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHcc-CCCCChhhHHHHHHHHHhcCChh
Q 047146 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE-MPVKNVVSWNSMIAGLTHRGQFK 307 (608)
Q Consensus 229 l~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 307 (608)
..+-.+.+.+..|...++.-......-.-....+..+...|+.-+++|....+... ...++ ...-|......|++.
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHH
Confidence 33444556666666666653111000000233444555577777777777666652 33332 223344556678888
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchh-HHHHHHHHhHhcCCHHHHHHHHhhc
Q 047146 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF-IGNALVDMYAKCGRIDQAFGVFRSM 386 (608)
Q Consensus 308 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 386 (608)
.|...|+.+.+.+ ++...+++.++......+.++...-..+...... .+... .++.=+.+--+.++++.......
T Consensus 1467 da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 8888888887764 3335566666666666666666555444333222 12222 22222333356666666666555
Q ss_pred CCCChhHHHHH--HHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHH----------HHHh
Q 047146 387 KCRDVYSYTAM--IVGLAIHGKAW--KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH----------FLDM 452 (608)
Q Consensus 387 ~~~~~~~~~~l--i~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~----------~~~~ 452 (608)
..+..+|.+. ...+.+..+-+ .-.+..+.+++.-+.| +.+|+..|.+..+.++ -...
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655 22333222222 1223333333321221 1122222221111111 1111
Q ss_pred HhhcCCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 453 SRVYNLQPQT------EHYGCMVDLFGRAGLIREALDLIKSM----PLVP-----DAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 453 ~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
....+..++. ..|..-+..-....+..+-+--+++. ...| -..+|....+.+++.|+++.|...+
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1111233321 22222222111111222222112211 1122 3458888889999999999999888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 518 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
=.+.+..+ +..+...+..+...|+...|+.++++..+.+.
T Consensus 1694 l~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1694 LNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred Hhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 87777774 45899999999999999999999999986554
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.21 E-value=0.067 Score=43.40 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 047146 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472 (608)
Q Consensus 422 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 472 (608)
..|+..++.+++.+|+..|++..|.++.+...+.++++-+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456666666666666666666666666666666666555566666555433
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.19 E-value=1.3 Score=42.62 Aligned_cols=287 Identities=13% Similarity=0.051 Sum_probs=155.6
Q ss_pred hHHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHh--hccCCchHHHHHHHHHHHccCCCCCchHHHHH
Q 047146 189 SWTTLIQAYVK--MDYPTEAILSFFDMCQANLRPDGMILVIVLSAC--SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264 (608)
Q Consensus 189 ~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 264 (608)
.|.+|-.++.. .|+-..|.++-.+-.+. +.-|...+..++.+- .-.|+++.|.+-|+.|.... +. -.--...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-Et--RllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ET--RLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HH--HHHhHHH
Confidence 35555555544 45666666665554322 444555566666543 34689999999999988641 11 1112223
Q ss_pred HHHHHHhcCChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChH--HHHHHHHHHhc-
Q 047146 265 LIDMYLKCGNIPSARKVFDEMPV--K-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDF--TLVCVLNSCAN- 337 (608)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~- 337 (608)
|.----+.|+.+.|..+-++.-. | -.-.+.+.+...+..|+|+.|+++++.-.+.. +.++.. .-..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33333457888888777666542 2 24467888999999999999999998776643 334432 22233333221
Q ss_pred --cCChHHHHHHHHHHHHcCCCCchhHH-HHHHHHhHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHH
Q 047146 338 --IGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALD 412 (608)
Q Consensus 338 --~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~ 412 (608)
..+...|...-.+..+ +.||..-- ..-..++.+.|++.++-++++.+=+ |.+..+ ..|....-.+.++.
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHH
Confidence 1233344443333333 23332211 1234566777777777777776643 333322 22333333333444
Q ss_pred HHHHHHH-CCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 047146 413 IFSEMSQ-VGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA-GLIREALDLIKSM 488 (608)
Q Consensus 413 ~~~~m~~-~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 488 (608)
-+++... ..++||. .....+..+....|++..|..--+...+ ..|....|..|.+.-... |+-.++...+.+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 4443322 1245544 3555566666667777666554444433 456666666666655433 6666666666554
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.19 Score=48.41 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-PLV-PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 541 (608)
++..+.-+|.+.+++.+|++..+.. ... +|....---..+|...|+++.|+..|+++++++|+|..+-..|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 5667788888999999998888877 333 36666656668899999999999999999999999998888888888777
Q ss_pred CChHH-HHHHHHHHHhC
Q 047146 542 NRWKE-ALKLRKKMKER 557 (608)
Q Consensus 542 g~~~~-A~~~~~~m~~~ 557 (608)
....+ ..++|..|-.+
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 76655 48889999643
No 226
>PRK11906 transcriptional regulator; Provisional
Probab=96.19 E-value=0.1 Score=51.50 Aligned_cols=66 Identities=17% Similarity=0.115 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA-FVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
......+..++.-.|+++.|..+|++. ...||. .+|-.....+...|+.++|.+.++++.++.|..
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 333444444444444455555555554 333422 233333333444555555555555555555543
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.16 E-value=1.5 Score=43.03 Aligned_cols=83 Identities=11% Similarity=0.165 Sum_probs=58.5
Q ss_pred CCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHH
Q 047146 79 QNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157 (608)
Q Consensus 79 ~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (608)
.+.|+.+|-.+|.-+..++..++ .+++++|... .+--...|..-+++=....+++..+.+|.+.++..+. ...|..
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~l 114 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWML 114 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHH
Confidence 45677889999999988888888 8888888642 2223346666677666677888888999888876543 555666
Q ss_pred HHHHHHh
Q 047146 158 LMRLYAV 164 (608)
Q Consensus 158 li~~~~~ 164 (608)
.+.---+
T Consensus 115 Yl~YIRr 121 (660)
T COG5107 115 YLEYIRR 121 (660)
T ss_pred HHHHHHh
Confidence 5554333
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.04 E-value=0.012 Score=43.30 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-------P-LVPD-AFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
+++.+...|...|++++|+..+++. + ..|+ ..++..+...+...|++++|++.++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444445555555555554444443 1 1122 34555666667777777777777766654
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=0.049 Score=49.64 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=31.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPEG---DGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
|..++...|++++|..+|..+.+-.|++ |..+.-|+.+..+.|+.++|..+|+++.++-
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 3444555555555555555555544433 2345555555555555555555555555443
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.01 E-value=0.036 Score=46.86 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCccCCc
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK-----ERKVKKTPG 564 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 564 (608)
....++..+...|+++.|...++.+...+|-+...|..++.+|...|+..+|.+.++++. +-|+.|.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 455567778899999999999999999999999999999999999999999999999885 346665543
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.98 E-value=0.076 Score=42.13 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=70.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHhCCC
Q 047146 470 DLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD----GAYILMTNIYSSKNR 543 (608)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 543 (608)
-+++..|+++.|++.|.+. .+-| ....||.-..++.-.|+.++|..-+++++++.-+.. ..|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566788888888888776 4444 677888888888889999999988888888743332 257777888889999
Q ss_pred hHHHHHHHHHHHhCCCc
Q 047146 544 WKEALKLRKKMKERKVK 560 (608)
Q Consensus 544 ~~~A~~~~~~m~~~~~~ 560 (608)
-+.|..-|+..-+-|-+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 99999988888776643
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.92 E-value=0.24 Score=40.65 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=56.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHh
Q 047146 469 VDLFGRAGLIREALDLIKSM----PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG---AYILMTNIYSS 540 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 540 (608)
.....+.|++++|.+.|+.+ +..| ....-..++.++.+.+++++|...+++.+++.|.++. ++...+-.+.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 33445667777777777777 2222 3345556777888888888888888888888887764 22333333333
Q ss_pred CCC---------------hHHHHHHHHHHHhCC
Q 047146 541 KNR---------------WKEALKLRKKMKERK 558 (608)
Q Consensus 541 ~g~---------------~~~A~~~~~~m~~~~ 558 (608)
... ..+|..-|+++.++-
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 332 556666676666543
No 233
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.92 E-value=3.1 Score=44.61 Aligned_cols=114 Identities=10% Similarity=-0.025 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHhHhhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNLQPQT--EHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
+.+.|...+........+.+.. .++..++......+...+|...++.. +...|...+.--+......++++.+...+
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 3455555555554423333321 22333333333332244555555544 11123333333344444566666655555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 518 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
..+-+.....+..+.-++.++...|+.++|...|++.
T Consensus 336 ~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 336 ARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5554333334445556666666666666666666665
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.82 E-value=0.16 Score=41.29 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHh--------------HhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 047146 426 EVTFVGVLSACSHAGLVEEGCKHFLDM--------------SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--- 488 (608)
Q Consensus 426 ~~~~~~ll~~~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 488 (608)
..++..++.++++.|+++....+++.. .....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345555555666666665555555433 111233445555555555555555555555554443
Q ss_pred -CCCCCHHHHHHHHH
Q 047146 489 -PLVPDAFVWGALLG 502 (608)
Q Consensus 489 -~~~p~~~~~~~l~~ 502 (608)
++.-+..+|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 33334455555553
No 235
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.69 E-value=0.024 Score=36.14 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.++..++..|.+.|++++|++++++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47889999999999999999999999853
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.59 E-value=0.12 Score=43.55 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHh----hcCCCCChhH
Q 047146 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSR----VYNLQPQTEH 464 (608)
Q Consensus 394 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 464 (608)
...++..+...|++++|+.+.+++... .| |...+..++.++...|+...|.+.|..+.+ ..|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455556666666666666666663 33 455666667777777777766666665533 3456665543
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.45 E-value=2 Score=39.08 Aligned_cols=193 Identities=21% Similarity=0.154 Sum_probs=95.8
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HH
Q 047146 363 GNALVDMYAKCGRIDQAFGVFRSMK-----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS-AC 436 (608)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~ 436 (608)
.......+...+++..+...+.... ......+......+...+.+..+...+.........+. ........ .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHH
Confidence 3444444555555555555444432 12333444444445555555556666555554322221 11111122 45
Q ss_pred hccccHHHHHHHHHHhHhhcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCCHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNL--QPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD--AFVWGALLGACKIHAKVE 511 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~~~ 511 (608)
...|+++.+...+..... ..- ......+......+...++.+.|...+... ...++ ...+..+...+...++++
T Consensus 141 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 141 YELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 556666666666665533 111 012222333333345556666666666555 22232 445555555666666666
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.+...+.......|.....+..+...+...|.++++...+.+..+.
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666664445555555555555566666666665543
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.39 E-value=0.19 Score=45.96 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=50.0
Q ss_pred ccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM----PLVP-DAFVWGALLGACKIHAKVE 511 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 511 (608)
+.|++..|...|...++.+.-.+ ....+-.|..++...|++++|...|..+ +..| -+..+--|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34455555555555555221111 1233444556666666666665555554 2222 2344555555666777777
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 047146 512 LAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~ 529 (608)
+|...|+++.+..|..+.
T Consensus 233 ~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 233 EACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHHCCCCHH
Confidence 777777777777777653
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.35 E-value=0.11 Score=51.21 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=26.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT----EHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
.++.+..+|.+.|++++|...|+...+ +.|+. ..|..+..+|...|+.++|++.+++.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444455555555555555554443 23331 12444444444555555554444444
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.6 Score=43.71 Aligned_cols=112 Identities=8% Similarity=0.024 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccccHHHH
Q 047146 373 CGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF----VGVLSACSHAGLVEEG 445 (608)
Q Consensus 373 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~~~a 445 (608)
.|+..+|-..++++.+ .|..+++.-=.+|...|+.+.-...++++... ..||...| ..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3555555555555543 25555655566666666666666666665543 23333222 1222234456666666
Q ss_pred HHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 446 CKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 446 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
++.-++..+ +.+ |.-.-.+....+.-.|++.++.+++.+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 665555543 222 3333345555555666666666665554
No 241
>PRK09687 putative lyase; Provisional
Probab=95.20 E-value=2.9 Score=39.60 Aligned_cols=80 Identities=9% Similarity=-0.087 Sum_probs=34.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG-KAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
+..+-...+.++++.++.+....+...+..+|...-...+.++.+.+ ....+...+..+.. .+|..+-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 33444445555555555433333333333444444444444444332 12334444444442 334444445555555
Q ss_pred cccc
Q 047146 438 HAGL 441 (608)
Q Consensus 438 ~~g~ 441 (608)
+.|+
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 5555
No 242
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=5.3 Score=42.56 Aligned_cols=55 Identities=11% Similarity=0.095 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
-++..+....+.+.+..+.+..+-. |+..|..+++.+.+.+.++.-.+...++++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 3566677788889999998888633 888999999999998877777666666654
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.14 E-value=0.95 Score=45.85 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=100.1
Q ss_pred HHHHHhCCCchHHHHHHH-HHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhc
Q 047146 194 IQAYVKMDYPTEAILSFF-DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272 (608)
Q Consensus 194 i~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 272 (608)
....+-.++++++.++.+ .-.-..++ ..-...+++-+-+.|..+.|.++-. |. ..-.+...++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----------D~---~~rFeLAl~l 331 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT-----------DP---DHRFELALQL 331 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------------H---HHHHHHHHHC
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC-----------Ch---HHHhHHHHhc
Confidence 344556788888777765 21111122 4446777888888888888887743 22 1234556789
Q ss_pred CChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047146 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352 (608)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (608)
|+++.|.++-++.. +...|..|.....++|+++-|.+.|.+... +..++-.|...|+.+.-.++.....
T Consensus 332 g~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 332 GNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp T-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999888776 566899999999999999999999887653 4556666777777777777776666
Q ss_pred HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhc
Q 047146 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386 (608)
Q Consensus 353 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 386 (608)
..|- ++....++.-.|+.++..+++.+-
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6552 244455555667777777666543
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.13 E-value=1.3 Score=45.43 Aligned_cols=115 Identities=17% Similarity=0.083 Sum_probs=75.6
Q ss_pred cccHHHHHHHHHHhHhhcCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHcCCHH
Q 047146 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSM-PLV-----PDAFVWGALLGACKIHAKVE 511 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~~~~~ 511 (608)
..+.+.|.+++..+.+. -|+...|. .-.+.+...|++++|++.|++. ..+ -....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45677788888877663 35544443 3456667778888888888865 111 12334444556677788888
Q ss_pred HHHHHHHHHHhcCCCCCchHH-HHHHHHHhCCCh-------HHHHHHHHHHHh
Q 047146 512 LAEIVMENLVRFEPEGDGAYI-LMTNIYSSKNRW-------KEALKLRKKMKE 556 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~m~~ 556 (608)
+|...+..+.+...-+...|. ..+.+|...|+. ++|.+++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888887666555555 344455677777 888888888754
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.13 E-value=2.5 Score=38.49 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=90.3
Q ss_pred HhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcc----
Q 047146 371 AKCGRIDQAFGVFRSMKCR------DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHA---- 439 (608)
Q Consensus 371 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~---- 439 (608)
.+.|++++|.+.|+.+... ...+--.++-++.+.+++++|+..+++....- -.|| ..|...|.+++.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 3557777777777776532 12334445556667777777777777776632 1222 2343344443321
Q ss_pred ---ccH---HHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHH
Q 047146 440 ---GLV---EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV--WGALLGACKIHAKVE 511 (608)
Q Consensus 440 ---g~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~ 511 (608)
.|. .+|..-|+.++++ -|+. .-..+|..-+..+. |... =..+.+-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r---yPnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR---YPNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH---CCCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 122 2233333333332 1211 11111111111110 0010 123446688899999
Q ss_pred HHHHHHHHHHhcCCCCCc---hHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 512 LAEIVMENLVRFEPEGDG---AYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.|..-++.+++..|+.+. .+..+..+|...|..++|.+.-+-+.
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999999999988776654 56677788999999999888766654
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=95.08 E-value=2.2 Score=42.54 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=64.9
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 478 IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..+|.++-++. .+.| |+.....+..+....++++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++..
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34555555554 4444 777777777777788889999999999999999999999999999999999999999999865
Q ss_pred hCCC
Q 047146 556 ERKV 559 (608)
Q Consensus 556 ~~~~ 559 (608)
+..+
T Consensus 400 rLsP 403 (458)
T PRK11906 400 QLEP 403 (458)
T ss_pred ccCc
Confidence 5444
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.85 Score=42.24 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=75.6
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA---LLGACKIHAKVE 511 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 511 (608)
.....|++.+|..+|+..... .+-+....-.|+.+|...|+.+.|..++..++..-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345667777777777777662 222345566677888888888888888888754333222322 223333333332
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+.. -++.-...+|++...-..++..|...|+.++|.+.+=.+.+++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222 2333445678888888888888888888888888777776543
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.07 E-value=3.9 Score=40.28 Aligned_cols=133 Identities=15% Similarity=0.113 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYN-LQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAF-VWGALLGA 503 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~ 503 (608)
..|...+++-.+..-++.|..+|-+..+ .+ +.+++..+++++..++ .|+...|.++|+-- ..-||.. .-...+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4567777777888889999999999988 45 6678888999988765 57788899998865 3345544 44455667
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEG--DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
+...++-+.|+.+|+..++.-.++ ...|..++.--..-|+...+..+=++|.+.-.+.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 788899999999999877653333 4689999999999999999999988888765543
No 249
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.02 E-value=0.53 Score=41.22 Aligned_cols=150 Identities=22% Similarity=0.194 Sum_probs=89.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh--hHHHHHHHHHHhcCCHH
Q 047146 403 IHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT--EHYGCMVDLFGRAGLIR 479 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~ 479 (608)
..|-..-|.-=|.+... +.|+. ..||.+.--+...|+++.|.+.|+...+ +.|.- ...|.-| ++.-.|++.
T Consensus 77 SlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E---LDp~y~Ya~lNRgi-~~YY~gR~~ 150 (297)
T COG4785 77 SLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGI-ALYYGGRYK 150 (297)
T ss_pred hhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc---cCCcchHHHhccce-eeeecCchH
Confidence 33444444444454444 67875 5888888889999999999999998865 55642 2222222 233568888
Q ss_pred HHHHHHHhC----CCCCCHHHHHHHHH--------------HHHHcCCHHH-------------HHHHHHHHHhcCCCC-
Q 047146 480 EALDLIKSM----PLVPDAFVWGALLG--------------ACKIHAKVEL-------------AEIVMENLVRFEPEG- 527 (608)
Q Consensus 480 ~A~~~~~~~----~~~p~~~~~~~l~~--------------~~~~~~~~~~-------------a~~~~~~~~~~~p~~- 527 (608)
-|.+-+... +..|-...|.-+.. -+..+.+-.. -+.+++++.+...++
T Consensus 151 LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNT 230 (297)
T ss_pred hhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchH
Confidence 887766554 33343345544432 1111111111 112233333222222
Q ss_pred ------CchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 528 ------DGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 528 ------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+.+|..|+.-|...|+.++|..+|+-....+
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2589999999999999999999999876544
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.96 E-value=2.8 Score=38.17 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCCCC-----------------chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 512 LAEIVMENLVRFEPEGD-----------------GAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.|..-++.+++..|++. ..=...+..|.+.|.+--|..-+++|.+.
T Consensus 134 ~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 134 AAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 34445555556666654 12346788899999999999999999875
No 251
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.86 E-value=0.29 Score=44.60 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=79.8
Q ss_pred HHHHHHhhcC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc----------
Q 047146 378 QAFGVFRSMK--CRDVYSYTAMIVGLAIH-----GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG---------- 440 (608)
Q Consensus 378 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------- 440 (608)
..++.|.... ++|-.+|-+++..+... +..+-....++.|.+.|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 4456666666 67888888888888654 456667777889999999999999999998875542
Q ss_pred ------cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCH
Q 047146 441 ------LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478 (608)
Q Consensus 441 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (608)
+-+-++.+++.|.. +|+.||.++-..|+.++++.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 33457889999988 89999999999999999988864
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.85 E-value=0.96 Score=37.20 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 047146 510 VELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~ 528 (608)
...|..-|+.+++..|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5578888888888889875
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.82 E-value=2 Score=35.78 Aligned_cols=42 Identities=19% Similarity=0.100 Sum_probs=21.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047146 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373 (608)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 373 (608)
++..+...+.......+++.+.+.+ ..++...+.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3444444444555555555554444 24445556666666554
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.71 E-value=3.2 Score=37.61 Aligned_cols=197 Identities=16% Similarity=0.097 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CCh-hHHHHHHH-H
Q 047146 326 FTLVCVLNSCANIGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDV-YSYTAMIV-G 400 (608)
Q Consensus 326 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 400 (608)
..+......+...+....+...+...... ........+......+...+++..+.+.+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33444444444555555554444444332 2233344445555566666667777777766553 221 22333333 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhc
Q 047146 401 LAIHGKAWKALDIFSEMSQVGIEP----DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRA 475 (608)
Q Consensus 401 ~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 475 (608)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 7888999999999988855 333 233444444456778899999998888876 2333 367778888888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 476 GLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 476 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
++++.|...+... ...|+ ...+..+...+...+..+.+...+++..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999988887 44554 445555555555777899999999999988887
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.71 E-value=8.2 Score=42.97 Aligned_cols=127 Identities=15% Similarity=0.173 Sum_probs=79.1
Q ss_pred CChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHH----hccCChHHHHHHH
Q 047146 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC----ANIGWLELGKWVH 348 (608)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~ 348 (608)
+++++|+.-+.++. ...|.-.+..--++|.+++|+.++ .|+...+..+..+| ...+.++.|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45666666555554 223444444445566666666654 57777666665554 4556666666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHH---HHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY---TAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 349 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
...-+. .--+.+|..+|++.+|..+-.++..+-.... ..|+.-+...+++-+|-++..+-..
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 544322 2345677788888888888887765433332 5677778888888888888776654
No 256
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.67 E-value=6 Score=40.57 Aligned_cols=118 Identities=11% Similarity=-0.004 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-----PLVPDAFVWGALL 501 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~ 501 (608)
.+|...+.--...|+.+...-.|++..- ....-...|--.++-....|+.+-|..++... +..|....+.+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3555555555555666665555555433 11112234444444444445555555554443 1222222222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHH
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 548 (608)
+-..|++..|..+++.+.+-.|.....-..-+....+.|..+.+.
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 233456666666666666555554444444445555555555555
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.59 E-value=6.4 Score=40.55 Aligned_cols=157 Identities=10% Similarity=0.022 Sum_probs=99.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCH-----hHHHHHHHHhhc----cCCchHHHHHHHHHHHccCCCCCch
Q 047146 190 WTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDG-----MILVIVLSACSK----LGDLSLGIKIHRYITDNHFNLSPDV 259 (608)
Q Consensus 190 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~ 259 (608)
...++....-.|+-+.+++++.+-.+.+ +.-.. -+|..++..+.. ..+.+.+.+++..+.+.-+ +.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP----~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP----NS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC----Cc
Confidence 3455666666788888888887764432 32111 124444444333 4567888899988888732 44
Q ss_pred HHH-HHHHHHHHhcCChHHHHHHHccCCC-------CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHH
Q 047146 260 FIH-NALIDMYLKCGNIPSARKVFDEMPV-------KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331 (608)
Q Consensus 260 ~~~-~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 331 (608)
..| -.-.+.+...|++++|++.|++... -....+--+.-.+.-..+|++|.+.|..+.+.. ..+..+|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 333 3445667778999999999986542 123345556667888899999999999998864 4555555555
Q ss_pred HHHHh-ccCCh-------HHHHHHHHHH
Q 047146 332 LNSCA-NIGWL-------ELGKWVHTYL 351 (608)
Q Consensus 332 l~~~~-~~~~~-------~~a~~~~~~~ 351 (608)
..+|. ..++. ++|..++..+
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 54443 45555 6666666655
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.51 E-value=6.5 Score=40.32 Aligned_cols=182 Identities=12% Similarity=0.078 Sum_probs=122.1
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCR---DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
+..+|+.-++.-.+.|+.+.+.-+|++..-| -...|-..+.-....|+.+-|..++.+..+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456677777778889999999999887654 3345666655555668888888777776654333222222222233
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-----HHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREAL---DLIKSM-PLVPDAFVWGALL-----GACK 505 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~-----~~~~ 505 (608)
+...|+++.|..+++.+.++ . |+ ...-..-+....+.|..+.+. +++... +.+-+..+...+. -.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999884 3 54 333344466677888888887 555544 2222333332222 1234
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
-.++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 57889999999999999999999999999988877663
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=8.1 Score=41.29 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=36.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
++..+.+..+.+.+..+.+. .++.+|..|..+...+++.+.+++-.++..+..
T Consensus 711 l~~~~~q~~d~E~~it~~~~---~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCER---LGKEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHH---hCccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 44556666777766665543 467788899999999999987666555555443
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.45 E-value=1.3 Score=42.09 Aligned_cols=123 Identities=13% Similarity=0.121 Sum_probs=59.8
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhcCCC--C--ChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHH
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQ--P--QTEHYGCMVDLFGRAGLIREALDLIKSM-------PLVPDAFVWGA 499 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ 499 (608)
++..+....+.++++.+.|+.+.+...-. | ...++-.|...|.+..++++|.-+..+. +++.=..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34445555556666666666554411111 1 2345566666666666666554443332 22211112222
Q ss_pred -----HHHHHHHcCCHHHHHHHHHHHHhc--CCCC----CchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 500 -----LLGACKIHAKVELAEIVMENLVRF--EPEG----DGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 500 -----l~~~~~~~~~~~~a~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
+.-++...|..-.|.+.-+++.++ ...| ......++++|...|+.+.|..-++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 224455666666666666655543 1222 22344566666666666665544443
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.44 E-value=2.5 Score=35.23 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=16.3
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHH
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKCR---DVYSYTAMIVGLAI 403 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 403 (608)
++..+...+.......+++.+... +....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 444444444444444444443321 23344444444443
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.42 E-value=4.8 Score=38.44 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhCCChHHHHHH
Q 047146 530 AYILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~ 550 (608)
....++.+|...|.-++-..-
T Consensus 333 ~hcrla~iYrs~gl~d~~~~h 353 (518)
T KOG1941|consen 333 LHCRLASIYRSKGLQDELRAH 353 (518)
T ss_pred HHHHHHHHHHhccchhHHHHH
Confidence 345667777666665544333
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=4.5 Score=37.70 Aligned_cols=175 Identities=15% Similarity=0.067 Sum_probs=108.9
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcC
Q 047146 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457 (608)
Q Consensus 378 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 457 (608)
...+.++.+..+....--.-.......|++.+|..+|+...... .-+......+..++...|+.+.|..++..+-.+ -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 33444444443322222223345677888889999888888752 223456667788889999999999888877441 1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCchHHHH
Q 047146 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRF--EPEGDGAYILM 534 (608)
Q Consensus 458 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 534 (608)
-.........-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|...+=.+++. +-.+......|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111122234555566555555555555553455 6666667778888899999998877777655 45566788888
Q ss_pred HHHHHhCCChHH-HHHHHHHH
Q 047146 535 TNIYSSKNRWKE-ALKLRKKM 554 (608)
Q Consensus 535 ~~~~~~~g~~~~-A~~~~~~m 554 (608)
+.++.-.|.-+. +.+..++|
T Consensus 279 le~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 279 LELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 888888875444 33344433
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.30 E-value=5.8 Score=38.88 Aligned_cols=74 Identities=16% Similarity=0.061 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCC-------ChhhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChHHHHHH
Q 047146 262 HNALIDMYLKCGNIPSARKVFDEMPVK-------NVVSWNSMIAGLTH---RGQFKEALDIFRRMQGLGLKPDDFTLVCV 331 (608)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 331 (608)
...++-+|-...+++..+++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..|+..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334555577777777777777777632 11111223344455 67888888888876555556777777666
Q ss_pred HHHH
Q 047146 332 LNSC 335 (608)
Q Consensus 332 l~~~ 335 (608)
...|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 6554
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.95 E-value=5.9 Score=37.63 Aligned_cols=19 Identities=11% Similarity=-0.209 Sum_probs=12.7
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 047146 503 ACKIHAKVELAEIVMENLV 521 (608)
Q Consensus 503 ~~~~~~~~~~a~~~~~~~~ 521 (608)
.+.+.++++.|.+.++-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3556777877777776543
No 266
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.92 E-value=0.2 Score=29.52 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 44555566666666666666666666666653
No 267
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.91 E-value=0.23 Score=42.81 Aligned_cols=94 Identities=13% Similarity=0.031 Sum_probs=39.2
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCC
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQ---TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA-FVWGALLGACKIHAK 509 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~ 509 (608)
-+.+.|++++|..-|..+.....-.+. ...|..-..++.+.+.++.|++-.... .+.|.. ....--..+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355556666666666655542111111 122333333444445555554444333 222211 111111223444445
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 047146 510 VELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~ 528 (608)
+++|..-+.++++.+|...
T Consensus 184 ~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHHHHHHHhCcchH
Confidence 5555555555555555443
No 268
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.77 E-value=2.1 Score=34.43 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=68.8
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHH
Q 047146 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278 (608)
Q Consensus 199 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 278 (608)
-.|..++..++..+.... .+..-++.++--....-+-+...++++.+-+. + |. ..||++...
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki-F----Di----------s~C~NlKrV 75 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI-F----DI----------SKCGNLKRV 75 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-----G----------GG-S-THHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh-c----Cc----------hhhcchHHH
Confidence 345566666666665443 24445555555444444444444444333221 1 11 123333333
Q ss_pred HHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 047146 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356 (608)
Q Consensus 279 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (608)
...+-.+-. +....+.-+.....+|.-+.-.+++.++...+ .+++.....+..+|.+.|+..++.+++..+-+.|+
T Consensus 76 i~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 76 IECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 333322221 23344556677778888888888887776533 67777777788888888888888777777766664
No 269
>PRK15331 chaperone protein SicA; Provisional
Probab=93.73 E-value=2 Score=36.37 Aligned_cols=83 Identities=8% Similarity=-0.008 Sum_probs=36.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (608)
.+.|++++|..+|+-+... .| |..-+..|..+|-..+++++|...|..... .. .-|+...-....+|...|+.+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHH
Confidence 3445555555555554442 22 222333333344444555555555554433 11 1122222233444555555555
Q ss_pred HHHHHHhC
Q 047146 481 ALDLIKSM 488 (608)
Q Consensus 481 A~~~~~~~ 488 (608)
|+..|+..
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 55554444
No 270
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.64 E-value=0.17 Score=29.89 Aligned_cols=32 Identities=16% Similarity=0.055 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
.+|..+...+...|++++|...++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34556666666777777777777777766665
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.54 E-value=8.3 Score=38.04 Aligned_cols=150 Identities=9% Similarity=-0.024 Sum_probs=75.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC--hh
Q 047146 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP---DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ--TE 463 (608)
Q Consensus 389 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 463 (608)
....+|..++..+.+.|+++.|...+.++...+..+ .......-.......|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567777777888888888888777777643222 2233333455566677777777777666651 11111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047146 464 HYGCMVDLFGRAGLIREALDL-IKSMPLVPDAFVWGALLGACKIH------AKVELAEIVMENLVRFEPEGDGAYILMTN 536 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 536 (608)
....+...+.. ..+..... ........-...+..+...+... ++.+++...+..+.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111100000 00000000 00000000112222233333333 77788888888888888887777777776
Q ss_pred HHHhC
Q 047146 537 IYSSK 541 (608)
Q Consensus 537 ~~~~~ 541 (608)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 66544
No 272
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.45 E-value=1.8 Score=43.83 Aligned_cols=158 Identities=11% Similarity=0.016 Sum_probs=96.5
Q ss_pred HHHhHhcCCHHHHHHHHh--hcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 047146 367 VDMYAKCGRIDQAFGVFR--SMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 443 (608)
.+...-.|+++++.++.. ++. .-+..-.+.++.-+.+.|.++.|+.+..+-.. - .....+.|+++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------r----FeLAl~lg~L~ 335 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH--------R----FELALQLGNLD 335 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--------H----HHHHHHCT-HH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH--------H----hHHHHhcCCHH
Confidence 344455688888665554 211 11244577778888888888888887443221 1 34456788888
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
.|.++.+. .++...|..|.+...+.|+++-|++.+.+.+ | |..|+-.|...|+.+.-.++.+.+...
T Consensus 336 ~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---d---~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---D---FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---C---ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88654332 2467789999999999999999999998884 2 455666677788877766666665544
Q ss_pred CCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 524 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
+. ++.....+.-.|+.++..+++.+-
T Consensus 403 ~~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 GD-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cC-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33 344445556678888888877653
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.40 E-value=2.3 Score=42.50 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=28.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPE--GDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+...+.+.|+.++|.+.+.++.+..|. +..+...|+..|...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444445555555555555555544443 22344455555555555555555555543
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.13 E-value=0.19 Score=30.27 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 530 AYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999999854
No 275
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.98 E-value=0.97 Score=41.36 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=76.5
Q ss_pred HHHHHccCC--CCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC-----------
Q 047146 278 ARKVFDEMP--VKNVVSWNSMIAGLTHR-----GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG----------- 339 (608)
Q Consensus 278 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 339 (608)
.++.|.... ++|-.+|-+.+..+... +..+-....++.|.+-|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345565555 56677777777766543 556667777888888899899999988888765543
Q ss_pred -----ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH-HHHHHHHhhc
Q 047146 340 -----WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI-DQAFGVFRSM 386 (608)
Q Consensus 340 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 386 (608)
+-.-++.++++|...|+-||..+-..|++++.+.+-. .+..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345677888888888888888888888888877653 2333443333
No 276
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.93 E-value=4.5 Score=34.53 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChh
Q 047146 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307 (608)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 307 (608)
..+++.+...|++-+|.++.+....-+...-..++.+-.+.++..
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQ 137 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHH
Confidence 334445555555555555555443333333344444444444433
No 277
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.90 E-value=11 Score=37.47 Aligned_cols=442 Identities=10% Similarity=0.079 Sum_probs=211.2
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCc-----hhHHH-HHHHHHccCCchHHHh-----hCCCCCcchHHHHHHHH--HcC
Q 047146 30 RLESSKSVGQLKQFHAFIIKTGSPQH-----QTQIL-YDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQCL--SNA 96 (608)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~-l~~~~~~~g~~~~A~~-----~~~~~~~~~~~~li~~~--~~~ 96 (608)
.++..+++.++..++..+.+..-... ..... ++++|-... ++.-.. +-..| ...|-.+..++ .+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 45555678888888888876433221 23344 777775542 333222 11222 33455555543 345
Q ss_pred CCccH-HHHHHHHHHC--CCCC------------CceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcC----CcHhHHHH
Q 047146 97 NPLEA-IALYREMLIK--GLLP------------NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL----SNVYVFNT 157 (608)
Q Consensus 97 ~~~~~-~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~ 157 (608)
+.+.. ++.+...... +..| |..-=+..+.++...|++.+++.+++.++..=++ .+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 56655 6666665543 2221 1111223344566778888888888777665443 67777877
Q ss_pred HHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc--
Q 047146 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL-- 235 (608)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-- 235 (608)
++-++++.=-++--..... .+-|| |--+|..|.+. +..++.-.-..+.|-...+..++....-.
T Consensus 173 ~vlmlsrSYfLEl~e~~s~-----dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSS-----DLYPD---YYEMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred HHHHHhHHHHHHHHHhccc-----ccChH---HHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 7766665322221111111 11111 33444444332 11111111112344444444454444322
Q ss_pred CCchHHHHHHHHHHHccCCCCCch-HHHHHHHHHHHhcCChHHHHHHHccCC--------CCChhhHHHHHHHHHhcCCh
Q 047146 236 GDLSLGIKIHRYITDNHFNLSPDV-FIHNALIDMYLKCGNIPSARKVFDEMP--------VKNVVSWNSMIAGLTHRGQF 306 (608)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~ 306 (608)
..+.--.+++....+. -+.|+- -+...|+.-+.+ +.+++..+-+.+. +.=+.++..++....+.++.
T Consensus 239 e~l~~~mq~l~~We~~--yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T 314 (549)
T PF07079_consen 239 ERLPPLMQILENWENF--YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQT 314 (549)
T ss_pred hhccHHHHHHHHHHhh--ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2233344455444333 222232 233444444443 3333333322221 23345788888888888888
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHH-------HHHHh-ccCChHHHHH---HHHHHHHcCCCCchhHHHHHHH---HhHh
Q 047146 307 KEALDIFRRMQGLGLKPDDFTLVCV-------LNSCA-NIGWLELGKW---VHTYLDKNHINTDGFIGNALVD---MYAK 372 (608)
Q Consensus 307 ~~A~~~~~~m~~~g~~p~~~t~~~l-------l~~~~-~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~li~---~~~~ 372 (608)
.+|...+.-+... .|+...-.-+ -+..+ .-.++..-.. +|..+...++..- ....-|+. -+-+
T Consensus 315 ~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 315 EEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHh
Confidence 8888888766553 4443311111 11111 1112222222 2222222222111 11111211 1223
Q ss_pred cCC-HHHHHHHHhhcCC---CChhHHHHHH----HHHHH---cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--
Q 047146 373 CGR-IDQAFGVFRSMKC---RDVYSYTAMI----VGLAI---HGKAWKALDIFSEMSQVGIEPDE----VTFVGVLSA-- 435 (608)
Q Consensus 373 ~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~-- 435 (608)
.|. -++|..+++.+.+ -|..+-|... .+|.+ .....+-+.+-+-+.+.|+.|-. ..-+.+..|
T Consensus 392 ~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred cCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 333 6777777776653 3443333322 22322 12233344444445566666632 233333333
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 499 (608)
+...|++.++.-.-..+. .+.|++.+|..+.-.+....++++|..++..+| |+..++++
T Consensus 472 Lysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 455677777765554443 367777788777777777778888888887773 45544443
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.51 E-value=0.65 Score=39.00 Aligned_cols=70 Identities=16% Similarity=0.032 Sum_probs=34.6
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 474 RAGLIREALDLIKSM-PLVPDAFVWGAL-LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 474 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
+.++.+++..++..+ -.+|.......+ ...+...|++.+|.++|+.+.+..|..+..-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 455666666666655 233332222221 1234556666666666666655555555444444444444444
No 279
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.48 E-value=0.43 Score=38.02 Aligned_cols=55 Identities=20% Similarity=0.076 Sum_probs=51.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
-+....|+.+.|++.|.+++.+-|..+++|+.-+..|.-+|+.++|+.-+++..+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999998875
No 280
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=8.4 Score=34.81 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 047146 293 WNSMIAGLTHRGQFKEALDIFRRM 316 (608)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~~~~~m 316 (608)
|..-..+|-..+++++|...+.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 444444555555555555544444
No 281
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.19 E-value=1.6 Score=41.10 Aligned_cols=160 Identities=10% Similarity=0.011 Sum_probs=121.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHH----HHHHHHhcCC
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC----MVDLFGRAGL 477 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~ 477 (608)
--+|+..+|...++++.+. .+.|-..+...=.+|...|+...-...++++.. ...|+...|.. +.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3468888999999999885 455666777777899999999999999999876 34566554443 3445568999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhCCChHHHHHHH
Q 047146 478 IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG----DGAYILMTNIYSSKNRWKEALKLR 551 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 551 (608)
+++|++.-++. .+.| |.-.-.++...+...|+.+++.++.++-...-... ...|-+.+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999888 6665 66677788888888999999999988765543222 246778888888899999999999
Q ss_pred HHHHhCCCccCCc
Q 047146 552 KKMKERKVKKTPG 564 (608)
Q Consensus 552 ~~m~~~~~~~~~~ 564 (608)
++=.-+...++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8765444444443
No 282
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.16 E-value=0.7 Score=38.07 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=27.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
.++.+++..+++.+.-+.|+.+..-..-+.++...|+|++|..++++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4555555555555555555555555555555555555555555555554433
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=22 Score=37.98 Aligned_cols=94 Identities=17% Similarity=0.255 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 047146 408 WKALDIFSEMSQVGIEP-----DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482 (608)
Q Consensus 408 ~~A~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 482 (608)
+..++++.+.....+-| +.......+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.++.++|+
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHH
Confidence 34555555554433333 122345556667777777777766666632 3344444445667788888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047146 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 483 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 513 (608)
++.++- .|...|..||.-+...-.+-.+
T Consensus 682 efvKeq---~D~eLWe~LI~~~ldkPe~~~~ 709 (846)
T KOG2066|consen 682 EFVKEQ---DDSELWEDLINYSLDKPEFIKA 709 (846)
T ss_pred HHHHhc---CCHHHHHHHHHHhhcCcHHHHH
Confidence 877764 4888999999877555444333
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.46 E-value=3.9 Score=36.85 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=24.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 501 LGACKIHAKVELAEIVMENLVRFEPEGDG------AYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 501 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
.+.+.+..++++|-..+.+-....-.-.. .|...+-+|....++..|.+.++.-
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 34445555555555444433222222211 1333444445555666666666544
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.26 E-value=1.2 Score=41.60 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..++..+...|+.+.+...++++.+..|-+...|..++.+|.+.|+...|+..++++.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3344444455555555555555555555555555555555555555555555555553
No 286
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.42 E-value=22 Score=36.00 Aligned_cols=175 Identities=7% Similarity=0.004 Sum_probs=112.5
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 434 (608)
..|.....+++..+...-...-++.+-.+|.. .+-..|..+++.|.++ ..++-..+|+++.+. .-|.+.+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHH
Confidence 34455556777777777777777777777763 4666788888888888 567788888888884 455555555555
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQ------TEHYGCMVDLFGRAGLIREALDLIKSM----PLVPDAFVWGALLGAC 504 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 504 (608)
.+...++.+.+..+|.++.. .+-|. .+.|.-|+... ..+.+....+...+ +...-.+.+.-+..-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 55555888888888888766 23331 23455554432 23555555555554 3334455566666677
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
....++++|++++..+++.+..+.-+.-.++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 7888888888888888777666554444444333
No 287
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.14 E-value=1.5 Score=29.18 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhhCCC
Q 047146 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 606 (608)
....++-++.+.|++++|.+..+.+.+ ..|++...-.+...+-+++++.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 345678889999999999999999984 458898888888888889998884
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.05 E-value=0.68 Score=27.16 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
+|..+...+...|++++|...++++.++.|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4455556666666666666666666666653
No 289
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.03 E-value=1.7 Score=40.49 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=64.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH-----CCCCCCHhHHH
Q 047146 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-----ANLRPDGMILV 226 (608)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~t~~ 226 (608)
..++..++..+..+|+++.+...++++... .+-+...|..+|.+|.+.|+...|+..|+++.. .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 457788899999999999999999887663 345888899999999999999999999998755 57888777655
Q ss_pred HHHHH
Q 047146 227 IVLSA 231 (608)
Q Consensus 227 ~ll~~ 231 (608)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55444
No 290
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.91 E-value=5.2 Score=32.42 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=14.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
-+|.+.++++.++++++.+++.+|++.
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 445555555555555555555555553
No 291
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.89 E-value=5.8 Score=39.37 Aligned_cols=124 Identities=11% Similarity=0.053 Sum_probs=70.1
Q ss_pred hccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~ 514 (608)
...|++-.|-+-+....+.+.-.|+ ........+...|+++.+...+... -+.....+..++++...+.|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3445555554444444332222333 2222333445667777777766665 12334556666777777777777777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 047146 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562 (608)
Q Consensus 515 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 562 (608)
...+.++..+-+++++....+..-...|-+|++...|++...-+...+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 777777766666655554444445556677777777777765444333
No 292
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.73 E-value=0.79 Score=43.06 Aligned_cols=109 Identities=12% Similarity=0.015 Sum_probs=77.2
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCC
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLV-PDAFVWGALLGACKIHAK 509 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~ 509 (608)
.+-|.++|.+++|+..|..... +.| +..++..-..+|.+..++..|..-.+.. .+. .-...|.--..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 6678999999999999998865 456 7888888889999999998887766655 211 112244444445556788
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHH
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 548 (608)
.++|.+-++.++++.|.+.. |-..|.+.....++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 89999999999999999653 333444444444443
No 293
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.46 E-value=26 Score=35.48 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=26.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccccHHHHHHHHHHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEP--DEVTFVGVLSACSHAGLVEEGCKHFLDM 452 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 452 (608)
+...+.+.|+.++|++.+++|.+.. ++ +......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444445555555555555555431 11 1124444555555555555555555554
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.42 E-value=0.79 Score=27.52 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777778888888888888775543
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.41 E-value=12 Score=31.60 Aligned_cols=88 Identities=16% Similarity=0.044 Sum_probs=51.8
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQT-EHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~ 512 (608)
.-...++.+.+..++..+.- +.|.. ..-..-...+.+.|++.+|+++|+++ ...|....-.+|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34566788888888877754 45543 22233345567888888888888888 344555555666666654433333
Q ss_pred HHHHHHHHHhcCC
Q 047146 513 AEIVMENLVRFEP 525 (608)
Q Consensus 513 a~~~~~~~~~~~p 525 (608)
=....+++.+..+
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3333444444444
No 296
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.40 E-value=10 Score=36.20 Aligned_cols=62 Identities=8% Similarity=0.134 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcccc--HHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 408 WKALDIFSEMSQVGIEPDEV--TFVGVLSACSHAGL--VEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 408 ~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
+.+..+|+.+...|+..+.. ....++..+..... ..++.++++.+.+ .++++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHH
Confidence 45666777777777666443 33444433332222 3466677777766 577776666655443
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.22 E-value=3.9 Score=35.63 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCch----H
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSMP---LVP--DAFVWGALLGACKIHAKVELAEIVMENLVRFE--PEGDGA----Y 531 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~----~ 531 (608)
..+..+.+.|.+.|+.++|.+.+.++. ..| -...+..++..+...+++..+...++++...- +.+... -
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456677778888888888888887771 122 23355667777778888888888877777552 222211 1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHH
Q 047146 532 ILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
..-+-.+...+++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 12223344567888888887655
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.75 E-value=6.3 Score=34.37 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV--TFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.+..+..-|++.|+.++|++.|.++.+....|... .+..++..+...+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555566666666666666655544444332 444555555556666666555555544
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.68 E-value=0.62 Score=27.29 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..+..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999987643
No 300
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.51 E-value=7.5 Score=29.74 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 409 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.+..+.+-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 566667777777889999999999999999999999999999988754433 336766664
No 301
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.33 E-value=71 Score=39.11 Aligned_cols=312 Identities=9% Similarity=-0.007 Sum_probs=158.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCC--CCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHH
Q 047146 192 TLIQAYVKMDYPTEAILSFFDMCQANL--RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269 (608)
Q Consensus 192 ~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~ 269 (608)
++..+-.+.+.+.+|+..+++-..... .-...-|..+...|+..++++...-+...... +.. ....|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-------~~s-l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-------DPS-LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-------Ccc-HHHHHHHH
Confidence 455566778889999999988411111 11122344444489999999988777664221 222 23345556
Q ss_pred HhcCChHHHHHHHccCCC--CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHH-HHHHHhccCChHHHH
Q 047146 270 LKCGNIPSARKVFDEMPV--KN-VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC-VLNSCANIGWLELGK 345 (608)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~ 345 (608)
...|++..|...|+++.. |+ ...++-++......|.++.++-..+-..... .+....+++ =+.+--+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 778999999999999984 33 5578878877778888888777655554431 222222222 222334566666666
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHhHhc---CCHHHHHHHHhhcC----CC---------ChhHHHHHHHHHHHcCChHH
Q 047146 346 WVHTYLDKNHINTDGFIGNALVDMYAKC---GRIDQAFGVFRSMK----CR---------DVYSYTAMIVGLAIHGKAWK 409 (608)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~----~~---------~~~~~~~li~~~~~~~~~~~ 409 (608)
..+. ..+...-.. ..+.....+. ..+.. .+.++.+. .+ -...|..++....-..-...
T Consensus 1539 ~~l~---~~n~e~w~~--~~~g~~ll~~~~kD~~~~-~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSV--ESIGKLLLRNKKKDEIAT-LDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred hhhh---cccccchhH--HHHHHHHHhhcccchhhH-HHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 5554 111111000 0011111111 11111 01111111 00 01233333333221111111
Q ss_pred HHHHHHHHHHCCCCCCHH------HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-----ChhHHHHHHHHHHhcCCH
Q 047146 410 ALDIFSEMSQVGIEPDEV------TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-----QTEHYGCMVDLFGRAGLI 478 (608)
Q Consensus 410 A~~~~~~m~~~g~~p~~~------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~ 478 (608)
.. .. .++.++.. .|..-+.--....+..+-+-.+++..-.....| -..+|-...+...+.|++
T Consensus 1613 ~~----~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1613 IE----EL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HH----Hh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 10 00 11233221 122222221122222222222222222111222 246788888888889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 479 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
+.|...+-..+...-+..+.-........|+...|..++++.++..
T Consensus 1687 q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9998766555212233444455667788999999999999999763
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.82 E-value=1.3 Score=25.88 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666677777777777777777666
No 303
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.18 E-value=11 Score=28.65 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047146 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317 (608)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 317 (608)
-++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++..-+.+|.
T Consensus 21 HqEA~tIAdwL~~~~~~---~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWLHLKGES---EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHhcCCch---HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 45666666666554311 23333334456778999999999999999999999988754 46787888888888888
Q ss_pred hCCCCCChHHHH
Q 047146 318 GLGLKPDDFTLV 329 (608)
Q Consensus 318 ~~g~~p~~~t~~ 329 (608)
..| .|...+|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 877 56665554
No 304
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.05 E-value=1.1 Score=26.46 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHHHccCCCCCchHHHHHHHHHHHhcCChHHHH
Q 047146 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279 (608)
Q Consensus 246 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 279 (608)
++.++..+. +..+|+.+..+|...|++++|+
T Consensus 3 ~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 444555433 6777777777777777777765
No 305
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.95 E-value=8.4 Score=29.14 Aligned_cols=48 Identities=25% Similarity=0.275 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 488 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
+...|++.+..+.+++|.+.+++..|.++++.+.....++...|-.+.
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 367899999999999999999999999999988765544444565554
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.82 E-value=5.2 Score=30.57 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 488 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
+.+.|++.+..+.+++|.+.+++..|.++++.+...-.+....|..++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 367899999999999999999999999999998877555544676664
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.59 E-value=1 Score=24.68 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHH
Q 047146 530 AYILMTNIYSSKNRWKEALKLRK 552 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~ 552 (608)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888888888888888775
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.47 E-value=22 Score=31.15 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccccHHHHHHHHHHhHhhcCCCCChhH-----HHHHHHHHHhcCCHHHH
Q 047146 409 KALDIFSEMSQVGIEPDEVTFVG--VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH-----YGCMVDLFGRAGLIREA 481 (608)
Q Consensus 409 ~A~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-----~~~l~~~~~~~g~~~~A 481 (608)
+.....+++....-+..-.++.. +...+...+++++|...++.... .|.-.. --.|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44455555555321211122222 23457778888888888887654 122222 23456677788899999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 482 LDLIKSMPLVP--DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 482 ~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
+..++... .+ .......-..++...|+-++|+..++++++..+++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99888772 12 22223333467888899999999999888887444
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.09 E-value=12 Score=28.31 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 406 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
+.-++.+-++.+....+.|++....+.++||.+.+++..|.++|+.+..+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466677777777788999999999999999999999999999988764333 4446665554
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.89 E-value=7.8 Score=36.36 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=69.9
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-R--------DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 425 (608)
|.+....+...++..-....++++++..+-.+.. | ...+|-.+ +-.-++++++.++..=+..|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 4444455555666666667788888887776653 2 22233222 333467789999888889999999
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 426 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.++++.++..+.+.+++..|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999888887766
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.70 E-value=1.6 Score=26.97 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=22.7
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.+++.|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3678889999999999999999988864
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.52 E-value=1.9 Score=24.88 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=13.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
.++.+.|++++|.+.++++++..|+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444455555555555555555554
No 313
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.37 E-value=62 Score=35.40 Aligned_cols=184 Identities=14% Similarity=0.102 Sum_probs=104.4
Q ss_pred HhcCCHHHHHHHHhhcC----CCCh-------hHHHHHHH-HHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 047146 371 AKCGRIDQAFGVFRSMK----CRDV-------YSYTAMIV-GLAIHGKAWKALDIFSEMSQV----GIEPDEVTFVGVLS 434 (608)
Q Consensus 371 ~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~-~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~ 434 (608)
....++++|..++.+.. .|+. ..|+++-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34577888888777653 2222 24555543 344678889999888887654 11223345666677
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCChhH---HHHH--HHHHHhcCCHHHH--HHHHHhC-----CCCCC----HHHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEH---YGCM--VDLFGRAGLIREA--LDLIKSM-----PLVPD----AFVWG 498 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l--~~~~~~~g~~~~A--~~~~~~~-----~~~p~----~~~~~ 498 (608)
+..-.|++++|..+.....+. .-.-+... |..+ ...+...|+...| +..+... +.+|- ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777889999998877776652 22223322 3322 2334566633322 2333322 22332 23444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCc---hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRF----EPEGDG---AYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
.++.++.+ .+.+..-.....+. .|.... .+..|+.++...|+.++|...++++..-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 44444443 44444444444333 233222 23478889999999999999999997543
No 314
>PRK10941 hypothetical protein; Provisional
Probab=85.03 E-value=5.7 Score=37.21 Aligned_cols=63 Identities=24% Similarity=0.148 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..+.+-.+|.+.++++.|.+..+.++.+.|+++.-+...+-+|.+.|.+..|..-++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 344556788999999999999999999999999888999999999999999999999887543
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.81 E-value=1.1 Score=25.87 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 530 AYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
++..++.+|.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46788999999999999999999998654
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.75 E-value=2.2 Score=24.92 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688999999999999999999999875
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.71 E-value=3.4 Score=39.02 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 475 (608)
-..-|.++|.+++|+..|.+-.. +.| |.+++..-..+|.+...+..|+.-...+..- . ..-+..|+.-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHH
Confidence 35678999999999999999877 577 8899999999999999999887766666541 0 00122333333333334
Q ss_pred CCHHHHHHHHHhC-CCCCCHH
Q 047146 476 GLIREALDLIKSM-PLVPDAF 495 (608)
Q Consensus 476 g~~~~A~~~~~~~-~~~p~~~ 495 (608)
|...+|.+-++.. .+.|+..
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 5566666555555 5667643
No 318
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.47 E-value=63 Score=34.76 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=14.2
Q ss_pred HHhcCCHHHHHHHHHhCCCCC
Q 047146 472 FGRAGLIREALDLIKSMPLVP 492 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~p 492 (608)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 356788888888888887777
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.46 E-value=11 Score=33.36 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
+.-++.+.+.+.+.+|+...+.- +-+| |...-..++..++-.|++++|..-++-+-++.|...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44456667777788887776554 5556 555666677778888888888888887777777764
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.42 E-value=0.76 Score=38.50 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=63.3
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhC
Q 047146 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200 (608)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 200 (608)
..++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...+.++. .. ..-...+++.|.+.
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~----~~---~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT----SN---NYDLDKALRLCEKH 83 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS----SS---SS-CTHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc----cc---ccCHHHHHHHHHhc
Confidence 346777777888888888888888777667788899999999999888888888875 21 13335567777777
Q ss_pred CCchHHHHHHHHH
Q 047146 201 DYPTEAILSFFDM 213 (608)
Q Consensus 201 g~~~~a~~~~~~m 213 (608)
|.++++.-++.++
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 8777777777765
No 321
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.28 E-value=6.9 Score=36.70 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=69.7
Q ss_pred CcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCC---CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh
Q 047146 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ---AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM 223 (608)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 223 (608)
|......+...++..-....+++++...+-.+.... ..++. +-.+.++-+. .-++++++.++..=.+-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 444455556666666666677778777765543321 11222 1223344333 345678888888888889999999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHcc
Q 047146 224 ILVIVLSACSKLGDLSLGIKIHRYITDNH 252 (608)
Q Consensus 224 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 252 (608)
|++.+|+.+.+.+++..|.++.-.++...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999988888887777653
No 322
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.22 E-value=8.6 Score=33.83 Aligned_cols=76 Identities=14% Similarity=0.035 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCC-CCchHHHHHHHHHHHhcCChHHHH
Q 047146 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL-SPDVFIHNALIDMYLKCGNIPSAR 279 (608)
Q Consensus 203 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~ 279 (608)
-+.|.+.|-.+...+.--++.....+. .|....+.+++++++..+++...+. .+|+.++.+|++.|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 356777777776665443444444443 4444677888888887777754333 568888888888888888888774
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.61 E-value=3.1 Score=27.62 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
.+.-++.+.|+++.|.+..+.+++.+|++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 3456789999999999999999999999973
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.53 E-value=0.98 Score=37.82 Aligned_cols=84 Identities=13% Similarity=0.211 Sum_probs=55.6
Q ss_pred HHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChh
Q 047146 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307 (608)
Q Consensus 228 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 307 (608)
+++.+.+.+.++...++++.+...+... +....+.++..|++.++.+...++++.... .-...++..|.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~--~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKEN--NPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC---SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhccccc--CHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 4566667777777777788777654343 677888888888888777777777774332 33345566666666666
Q ss_pred HHHHHHHHH
Q 047146 308 EALDIFRRM 316 (608)
Q Consensus 308 ~A~~~~~~m 316 (608)
++.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 666666654
No 325
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.48 E-value=48 Score=32.59 Aligned_cols=52 Identities=10% Similarity=-0.027 Sum_probs=29.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (608)
..+.-+.|+|+...+........ .++...+..+... ..++.+.+....+...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 45667788888855554444322 2333344333332 6677777776666554
No 326
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.35 E-value=43 Score=32.02 Aligned_cols=145 Identities=8% Similarity=0.130 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--c----ccHHHHHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhcCCHH
Q 047146 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSH--A----GLVEEGCKHFLDMSRVYNLQP--QTEHYGCMVDLFGRAGLIR 479 (608)
Q Consensus 408 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 479 (608)
++.+.+++.|.+.|++-+..+|.+....... . ....++..+|+.|.+++.+-- +-..+..++.. ..++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3566778888888888887766554333322 2 235678889999988665533 33344444332 444443
Q ss_pred ----HHHHHHHhC---CCCC-CH-HHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCC-chHHHHHHHHHhCCChHHH
Q 047146 480 ----EALDLIKSM---PLVP-DA-FVWGALLGACKIHAK--VELAEIVMENLVRFEPEGD-GAYILMTNIYSSKNRWKEA 547 (608)
Q Consensus 480 ----~A~~~~~~~---~~~p-~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A 547 (608)
+++..++.+ ++.. |. .....++..+..... ..++..+++.+.+.+-.-. ..|..++-+-.-.+..++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 334444444 4433 33 344444433322222 3466677777776654322 2344444333333333244
Q ss_pred HHHHHHH
Q 047146 548 LKLRKKM 554 (608)
Q Consensus 548 ~~~~~~m 554 (608)
..-+.++
T Consensus 237 ~~~i~ev 243 (297)
T PF13170_consen 237 VEEIKEV 243 (297)
T ss_pred HHHHHHH
Confidence 4444444
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.73 E-value=29 Score=35.85 Aligned_cols=149 Identities=15% Similarity=0.082 Sum_probs=86.9
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHH
Q 047146 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFL 450 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 450 (608)
-.|+++.|..++-.++++ .-+.++.-+..+|-.++|+++ .+|.. -| ....+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF----elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF----ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh----hhhhhcCcHHHHHHHHH
Confidence 457777777776666632 233444555566666666644 33322 22 22345677777766554
Q ss_pred HhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 047146 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 451 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
+. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+.-..+-+...+.+..|.
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 43 234557778888888888888887777652 244555566666666555555555554444443
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Q 047146 531 YILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
-..+|...|+++++.+++.+-
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHhc
Confidence 223456677777777766543
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.70 E-value=9.1 Score=33.65 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=47.3
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhCCChHH
Q 047146 473 GRAGLIREALDLIKSMPLVP--DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE----GDGAYILMTNIYSSKNRWKE 546 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 546 (608)
.+.|+ ++|.+.|-.+.-.| +....-..+..|....+.+++++++-+++++.++ ++..+.+|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 45666666552222 3333333444455577888888888888877432 46788888888888888887
Q ss_pred HH
Q 047146 547 AL 548 (608)
Q Consensus 547 A~ 548 (608)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 329
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.53 E-value=19 Score=31.51 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=57.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHH
Q 047146 399 VGLAIHGKAWKALDIFSEMSQVGIEPDE-----VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLF 472 (608)
Q Consensus 399 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 472 (608)
.-+..+|++++|..-|.+..+. +++.. ..|..-..++.+.+.++.|+.-..+.++ +.|+ ......-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHH
Confidence 4467788888888888888775 23322 2344444567777888888777666655 3442 22333335577
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC
Q 047146 473 GRAGLIREALDLIKSM-PLVPD 493 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~-~~~p~ 493 (608)
.+...+++|++-++.+ ...|.
T Consensus 179 ek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc
Confidence 7777888888777776 44443
No 330
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.27 E-value=50 Score=31.31 Aligned_cols=60 Identities=15% Similarity=-0.015 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 393 SYTAMIVGLAIHGKAW---KALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~---~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
+...++.+|...+..+ +|..+++.+... .|+ ...+..-+..+.+.++.+++.+.+.+|+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 4555566666655443 455555555443 333 23444455666667777777777777776
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.27 E-value=6.5 Score=36.46 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+++...+.|...|.+.+|.++.++++.++|-+...+..|...|...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344555789999999999999999999999999999999999999999888888888885
No 332
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.11 E-value=86 Score=33.91 Aligned_cols=383 Identities=10% Similarity=-0.070 Sum_probs=175.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc
Q 047146 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235 (608)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 235 (608)
..-+..+++.+++..... |.. .++.+...-.....+....|+.++|.+....+-..|- ..+.....++..+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~-~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLA-FSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHH-hcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHc
Confidence 344455566777777777 332 2234444455666777777887777777766654442 2345566666666655
Q ss_pred CCchHHH--HHHHHHHHccC---------CCCCc-hHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHH--H
Q 047146 236 GDLSLGI--KIHRYITDNHF---------NLSPD-VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL--T 301 (608)
Q Consensus 236 ~~~~~a~--~~~~~~~~~~~---------~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~ 301 (608)
|.+.... +-+..+...+- .+.++ ......++..+.. ...+...+.... ++...-..++.++ .
T Consensus 177 g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASV 252 (644)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHH
Confidence 5433321 11111111110 00001 1112222222221 222222222221 1111111111121 1
Q ss_pred hcCChhHHHHHHHHHHhCC-CCCChH--HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047146 302 HRGQFKEALDIFRRMQGLG-LKPDDF--TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378 (608)
Q Consensus 302 ~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 378 (608)
...+.+.|..++....... ..+... ....+.......+..+.+...+....... .+..+...-+..-.+.++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3345577777777664432 222221 12222222222222444444444333222 233334444555557777877
Q ss_pred HHHHHhhcCCC--Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHH-HHHHHHhHh
Q 047146 379 AFGVFRSMKCR--DV-YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSR 454 (608)
Q Consensus 379 A~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 454 (608)
+...+..|... +. .-.-=+..++...|+.++|...|+++.. .. +|-.++.+ .+.|..-.. ......-..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~ 403 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPDS 403 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchhh
Confidence 77777777531 11 1112234455557788888888777633 11 23333221 112211000 000000000
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCchH
Q 047146 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE---PEGDGAY 531 (608)
Q Consensus 455 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~ 531 (608)
.....| --.-+..+...|+..+|...+..+-...+......+.......|.++.+..........+ -.-|..|
T Consensus 404 ~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~ 479 (644)
T PRK11619 404 ALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAW 479 (644)
T ss_pred hhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcch
Confidence 000001 112345566788999998888776223455666666677778888888887765443211 1223356
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
...+..+.+.-.++.+.-.---..|.+..|
T Consensus 480 ~~~~~~~a~~~~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 480 NDEFRRYTSGKGIPQSYAMAIARQESAWNP 509 (644)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 677777776666666554322223555544
No 333
>PRK09687 putative lyase; Provisional
Probab=80.95 E-value=52 Score=31.25 Aligned_cols=74 Identities=9% Similarity=-0.038 Sum_probs=38.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
+..+-...+.++.+.|+......+.+.+..++ .....+.++...|.. +|+..+.++... .||..+-...+.+|.
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 44444555555666665443333334433333 223455666666664 566777776653 446555555555543
No 334
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.66 E-value=1.1e+02 Score=34.85 Aligned_cols=255 Identities=7% Similarity=-0.102 Sum_probs=124.2
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 047146 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359 (608)
Q Consensus 280 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (608)
.+...+..+|...-..-+..+.+.+. +++...+.+... .++...-...+.++...+........+..+.+. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 44444456666666666666666554 334444444443 234433334444443332211111222222222 45
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 439 (608)
..+-...++++...+.- ....++..+..+|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555555555543321 12234455566676666666666666554332 12222 245555555556666665
Q ss_pred ccHHH-HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047146 440 GLVEE-GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518 (608)
Q Consensus 440 g~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 518 (608)
+..+. +...+..+.+ .++...-...+.++.+.|..+.+...+..+-..+|..+-...+.++...+.. ++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHH
Confidence 54332 2333444433 3566666777777777776655433333331235655555666666666553 3444443
Q ss_pred HHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 519 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.++ .-++..+....+.++.+.+.-..+...+....+
T Consensus 845 ~~L--~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EAL--TDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHh--cCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 333 222334555666666665333445555555443
No 335
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.36 E-value=21 Score=33.47 Aligned_cols=31 Identities=0% Similarity=0.006 Sum_probs=13.4
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 458 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
-.++..+...++..+++.+++.+-.++++..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~ 228 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQC 228 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHh
Confidence 3334444444444444444444444444433
No 336
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.18 E-value=46 Score=30.15 Aligned_cols=59 Identities=19% Similarity=0.337 Sum_probs=33.0
Q ss_pred HHhcCCHHHHHHHHHhC---CCCCCHHHHHH---HH--HHHHH-cCCHHHHHHHHHHHHhcCCCCCch
Q 047146 472 FGRAGLIREALDLIKSM---PLVPDAFVWGA---LL--GACKI-HAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---l~--~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
-+..+++.+|+++|++. ....+..-|.. ++ ..|.- ..+.-.+...+++..++.|.-..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 34566777788887776 22222222221 11 11222 356667778888888888875543
No 337
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.18 E-value=46 Score=30.15 Aligned_cols=92 Identities=11% Similarity=0.006 Sum_probs=50.0
Q ss_pred HHHHHHhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHhcCCCCCch-------H
Q 047146 468 MVDLFGRA-GLIREALDLIKSM-----PLVPDAFVWGALLG---ACKIHAKVELAEIVMENLVRFEPEGDGA-------Y 531 (608)
Q Consensus 468 l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~ 531 (608)
+...|-.- .+++.|+..++.. +-..+...-.+++. -....+++.+|+.+++++....-+++.. +
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33444333 4666666666665 22223333334443 3467889999999999998766555421 2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 532 ILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
..-+-.+.-..+.-.+...+++..+..+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 2222222233555556666666655443
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.85 E-value=50 Score=30.44 Aligned_cols=160 Identities=14% Similarity=0.199 Sum_probs=89.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCC--------C-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKC--------R-------DVYSYTAMIVGLAIHGKAWKALDIFSEMSQV-GIEPDEV 427 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~ 427 (608)
+-|...|...|.+.+-.+++.++.. . =...|..-|+.|...++..+...++++...- .--|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4566677777777777777776642 0 1246777788888888888888888876542 2234444
Q ss_pred HHHHHHHHH-----hccccHHHHHHHHHHhHhhcCC--CCC---hhHHHHHHHHHHhcC----CHHHHHHHHHhCCCCCC
Q 047146 428 TFVGVLSAC-----SHAGLVEEGCKHFLDMSRVYNL--QPQ---TEHYGCMVDLFGRAG----LIREALDLIKSMPLVPD 493 (608)
Q Consensus 428 ~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~--~p~---~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~p~ 493 (608)
... +++-| .+.|.+++|..-|-++.+.+.- .|. ..-|-.|..++.+.| +..+|.- ....|.
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPE 303 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDPE 303 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCHH
Confidence 333 33433 4567888876555444442221 222 223556667777666 1111110 022345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 494 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
......++.+|. .++..+-++++..-...--+++.
T Consensus 304 IlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~IM~DpF 338 (440)
T KOG1464|consen 304 ILAMTNLVAAYQ-NNDIIEFERILKSNRSNIMDDPF 338 (440)
T ss_pred HHHHHHHHHHHh-cccHHHHHHHHHhhhccccccHH
Confidence 556677777774 45655555555544443334443
No 339
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.54 E-value=43 Score=29.41 Aligned_cols=116 Identities=14% Similarity=0.037 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHCCCCCCHhHH--HHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 047146 205 EAILSFFDMCQANLRPDGMIL--VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF 282 (608)
Q Consensus 205 ~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 282 (608)
+.....+++.....+-.-.++ ..+...+...|+++.|+..++......-+..-...+--.|.......|.+|+|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455555666544212111122 233455677888888888888877542111001223344566777889999999998
Q ss_pred ccCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047146 283 DEMPVKNVVS--WNSMIAGLTHRGQFKEALDIFRRMQGLG 320 (608)
Q Consensus 283 ~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g 320 (608)
+....++-.. ...-...+...|+-++|..-|.+.++.+
T Consensus 150 ~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 8887664332 2333457888899999999998888875
No 340
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=79.44 E-value=27 Score=27.09 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=58.6
Q ss_pred cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047146 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314 (608)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 314 (608)
....++|..+.+.+...+. . ...+--.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~--~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-M--EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-T--HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-H--HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 3456788888888887753 2 44555555667788999999966666666788888877753 47888888888888
Q ss_pred HHHhCCCCCChHHH
Q 047146 315 RMQGLGLKPDDFTL 328 (608)
Q Consensus 315 ~m~~~g~~p~~~t~ 328 (608)
++-.+| .|....|
T Consensus 94 rla~~g-~~~~q~F 106 (116)
T PF09477_consen 94 RLASSG-SPELQAF 106 (116)
T ss_dssp HHCT-S-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 887766 4544444
No 341
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.32 E-value=36 Score=28.41 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=8.0
Q ss_pred CCCchHHHHHHHHHHH
Q 047146 200 MDYPTEAILSFFDMCQ 215 (608)
Q Consensus 200 ~g~~~~a~~~~~~m~~ 215 (608)
.++++++..++..|+-
T Consensus 23 ~~d~~D~e~lLdALrv 38 (153)
T TIGR02561 23 SADPYDAQAMLDALRV 38 (153)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4455555555555543
No 342
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.69 E-value=5.4 Score=24.40 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 495 FVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
.+++.+...|...|++++|..+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888887754
No 343
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=78.62 E-value=75 Score=31.73 Aligned_cols=104 Identities=12% Similarity=0.026 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEE
Q 047146 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYE 576 (608)
Q Consensus 497 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 576 (608)
...|+.-|...|+..+|.+.++++---.-....++-.++.+..+.|+-..-+.+++..-+.|.-. .+.....
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT--------~nQMtkG 583 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLIT--------TNQMTKG 583 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCcee--------HHHhhhh
Confidence 44577778888998888877655421122233478889999999999877788887776666422 1222222
Q ss_pred E----EeCCCCCCChhHHHHHHHHHHHHHhhCCCCC
Q 047146 577 F----RKGDKSHPKTLEIYKLLDEIMHQSKNHGYIL 608 (608)
Q Consensus 577 ~----~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 608 (608)
| -......-+.|..|..++......++.|++|
T Consensus 584 f~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~i~ 619 (645)
T KOG0403|consen 584 FERVYDSLPDLSLDVPNAYEKFERYVEECFQNGIIS 619 (645)
T ss_pred hhhhhccCcccccCCCcHHHHHHHHHHHHHHcCchh
Confidence 2 1112355667888999999888888888765
No 344
>PRK12798 chemotaxis protein; Reviewed
Probab=78.31 E-value=76 Score=31.60 Aligned_cols=180 Identities=17% Similarity=0.200 Sum_probs=113.0
Q ss_pred cCCHHHHHHHHhhcCC----CChhHHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHH
Q 047146 373 CGRIDQAFGVFRSMKC----RDVYSYTAMIVG-LAIHGKAWKALDIFSEMSQVGIEPDE----VTFVGVLSACSHAGLVE 443 (608)
Q Consensus 373 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~ 443 (608)
.|+.++|.+.+..+.. +....+-+|+.+ .....++.+|+++|+...- .-|.. ..+..-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4888888888888763 345667777765 4456788899999988776 34533 34455555677889988
Q ss_pred HHHHHHHHhHhhcCCCCChhH-HHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047146 444 EGCKHFLDMSRVYNLQPQTEH-YGCMVDLFGRAG---LIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMEN 519 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 519 (608)
++..+-....+.+...|-..- +..+...+.+.+ ..+.-..++..|.-.--...|..+.......|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 887777666665555554322 333344444333 3445556666663222355888888888899999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHH-----hCCChHHHHHHHHHHH
Q 047146 520 LVRFEPEGDGAYILMTNIYS-----SKNRWKEALKLRKKMK 555 (608)
Q Consensus 520 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~ 555 (608)
+..+...+ ..-...+.+|. -..+++++.+.+..+.
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 98886332 22233333333 2234556655555543
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.23 E-value=19 Score=36.00 Aligned_cols=51 Identities=16% Similarity=0.035 Sum_probs=22.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhH
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 453 (608)
...|+++.+...+...... +.....+...++....+.|++++|...-.-|.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 3344555554444443332 22233444444444445555555544444443
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.86 E-value=51 Score=30.39 Aligned_cols=178 Identities=8% Similarity=0.014 Sum_probs=102.7
Q ss_pred hcCCHHHHHHHHhhcCC--C-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCC--CCHHHHHHHHHHHhcc
Q 047146 372 KCGRIDQAFGVFRSMKC--R-----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQV---GIE--PDEVTFVGVLSACSHA 439 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~--p~~~~~~~ll~~~~~~ 439 (608)
+..++++|+.-|+++.+ + .......+|..+.+.+++++.++.+++|... .+. -+....++++...+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34467778777776642 1 2234455778888888888888888877531 122 2344667777666655
Q ss_pred ccHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC--CC-----CC-------CHHHHHHHH
Q 047146 440 GLVEEGCKHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIREALDLIKSM--PL-----VP-------DAFVWGALL 501 (608)
Q Consensus 440 g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~-----~p-------~~~~~~~l~ 501 (608)
.+.+....+++.-.+...-..+ -.+-+-|...|...|.+.+..++++++ .. .. -...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5555544444433221111112 123345677777777777777777665 00 01 123566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhCCChHHHHH
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDG------AYILMTNIYSSKNRWKEALK 549 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~ 549 (608)
..|...++-..-..++++++.....-|. +..+=+.+..+.|+|++|-.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 7777788888888888888765432221 12222344557778877653
No 347
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.64 E-value=4.8 Score=22.26 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=11.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 531 YILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
|..++..|...|++++|...+++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 348
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.10 E-value=1.1e+02 Score=32.96 Aligned_cols=170 Identities=8% Similarity=0.082 Sum_probs=93.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCC---CHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHH
Q 047146 194 IQAYVKMDYPTEAILSFFDMCQANLRP---DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270 (608)
Q Consensus 194 i~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 270 (608)
|+-+.+.+.+++|++..+.-.. ..| -.......+..+...|+++.|-...-.|... +..-|.--+..+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn------~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN------NAAEWELWVFKFA 434 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc------hHHHHHHHHHHhc
Confidence 5556777888888877665432 233 2234556677777778888877777666654 5666666666667
Q ss_pred hcCChHHHHHHHccCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHH
Q 047146 271 KCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349 (608)
Q Consensus 271 ~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 349 (608)
..++....-.++-.-+. -+...|..++..+.. .+.. -|.+.... -+++...-..++++. ..
T Consensus 435 e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~----~F~e~i~~-Wp~~Lys~l~iisa~------------~~ 496 (846)
T KOG2066|consen 435 ELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK----GFLELIKE-WPGHLYSVLTIISAT------------EP 496 (846)
T ss_pred cccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH----HHHHHHHh-CChhhhhhhHHHhhc------------ch
Confidence 66666544333332222 245567777777766 2222 22222221 122222222222211 11
Q ss_pred HHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCCh
Q 047146 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV 391 (608)
Q Consensus 350 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 391 (608)
++.+. .-+......|+..|...++++.|..++-...++++
T Consensus 497 q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 497 QIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11111 11222334588889999999999998888776544
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.98 E-value=5.2 Score=25.33 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 532 ILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..|+.+|...|+.+.|.+++++..+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467888899999999999998887544
No 350
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=76.55 E-value=4.3 Score=40.43 Aligned_cols=93 Identities=11% Similarity=0.059 Sum_probs=48.3
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCCChhH-HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCC
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH-YGCMVDLFGRAGLIREALDLIKSM-PLVPDA-FVWGALLGACKIHAK 509 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~ 509 (608)
+....+.++++.|..++.++++ +.|+... |..=..++.+.+++..|+.=+... ...|.. ..|.-=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 3444555666666666666655 4554332 222235556666666665444333 333322 222222344555566
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 047146 510 VELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~ 528 (608)
+.+|...|+......|+++
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHHHHHHhhhcCcCcH
Confidence 6666666666666666665
No 351
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.40 E-value=9.3 Score=28.84 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=19.4
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 517 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+++..+.+|++......++..+...|++++|.+.+-++.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555543
No 352
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.73 E-value=51 Score=28.31 Aligned_cols=86 Identities=13% Similarity=0.041 Sum_probs=43.6
Q ss_pred hHhcCCHHHHHHHHhhcCCCC--hhHH---HHH--HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccH
Q 047146 370 YAKCGRIDQAFGVFRSMKCRD--VYSY---TAM--IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLV 442 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~~~~--~~~~---~~l--i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 442 (608)
....|+...|...|+++...+ +... -.+ .-.+..+|.+++.....+.+...+-+--...-..|.-+-.+.|++
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch
Confidence 345566666666666654311 1111 111 112345666666666655554443222223444555556667777
Q ss_pred HHHHHHHHHhHhh
Q 047146 443 EEGCKHFLDMSRV 455 (608)
Q Consensus 443 ~~a~~~~~~~~~~ 455 (608)
..|.+.|..+..+
T Consensus 184 a~A~~~F~qia~D 196 (221)
T COG4649 184 AKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777766653
No 353
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.40 E-value=89 Score=30.95 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=49.4
Q ss_pred CHHHHHHHH---HHHHHcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hCCChHHHHHHHHHHHh
Q 047146 493 DAFVWGALL---GACKIHAKVELAEIVMENLVRFEPE-GDGAYILMTNIYS-SKNRWKEALKLRKKMKE 556 (608)
Q Consensus 493 ~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 556 (608)
|...|.++. ..+.+.|-+..|.+..+-+..++|. ||..-...++.|+ ++++++--+.+.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 555555554 5678889999999999999999998 7777777777777 77888877888777654
No 354
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.17 E-value=1.2e+02 Score=32.26 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
.+.+.|...+.++.+.++.....-......+.. ++++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 355566666666665553222111122222223 555555555555554444
No 355
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.10 E-value=53 Score=28.21 Aligned_cols=121 Identities=16% Similarity=0.125 Sum_probs=68.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChh-HHHHH--HHHHHhcC
Q 047146 401 LAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE-HYGCM--VDLFGRAG 476 (608)
Q Consensus 401 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g 476 (608)
+++.+..++|+.-|..+.+.|...-++ ............|+...|...|.++-.+.. .|.+. -...| .-.+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccc
Confidence 355667777777777777766443222 222223345666777777777777765322 22211 11111 22345667
Q ss_pred CHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 477 LIREALDLIKSM--PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 477 ~~~~A~~~~~~~--~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
.+++.....+.+ +-.| -...-.+|.-+..+.|++..|...|+.+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777777777666 2222 233444565666778888888887777765
No 356
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=74.87 E-value=54 Score=28.15 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=26.8
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 415 (608)
..+++.+...|++-+|.++.+....-+...-..++.+-.+.++...-..+++
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455566666677677666665543333333444455444444443333333
No 357
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.34 E-value=7.6 Score=33.39 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH
Q 047146 588 LEIYKLLDEIMH 599 (608)
Q Consensus 588 ~~~~~~l~~~~~ 599 (608)
...|..++++..
T Consensus 163 d~~ydv~gwvil 174 (186)
T PF06552_consen 163 DFKYDVFGWVIL 174 (186)
T ss_dssp ------------
T ss_pred chhhhhcchHHH
Confidence 345555555543
No 358
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=74.29 E-value=2.8 Score=33.43 Aligned_cols=25 Identities=52% Similarity=0.877 Sum_probs=20.2
Q ss_pred ceeEEEECCEEEEEEeCCCCCCChhHHHH
Q 047146 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592 (608)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 592 (608)
+|+|..+ |.|.+|+.+||+...++.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~ 26 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINK 26 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHH
Confidence 6788876 999999999999844444
No 359
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.95 E-value=21 Score=30.78 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
+++|...|+++.+.+|++. .|..-..+. ++|-++..++.+.+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 5677777888888899986 555444444 346777777766554
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.55 E-value=22 Score=31.64 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 047146 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268 (608)
Q Consensus 190 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 268 (608)
.+..++.+.+.+...+++.+.++-++.. +-|..+-..+++.++-.|++++|..-++.+-+......+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455666777777777777777665542 22344555667777777777777777777666655544455566666553
No 361
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.52 E-value=24 Score=31.83 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCHHHH-------HHHHHHHHhcC--CCC----CchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 496 VWGALLGACKIHAKVELA-------EIVMENLVRFE--PEG----DGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a-------~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
.+.-+.+.|...|+.+.. .+.++++.+.. |.. ......++.++.+.|+.++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 455556677777775544 44444444433 222 2456678999999999999999999997644
No 362
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.50 E-value=39 Score=25.92 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=42.9
Q ss_pred HHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047146 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430 (608)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 430 (608)
..+...|++++|..+.+.+..||...|-++-. .+.|..+++..-+.+|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34567788888888888888888888877644 35567777777777777765 55544443
No 363
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.00 E-value=1.3e+02 Score=31.87 Aligned_cols=46 Identities=11% Similarity=-0.024 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC---CChHHHHHHHHHHHhC
Q 047146 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSK---NRWKEALKLRKKMKER 557 (608)
Q Consensus 509 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 557 (608)
+++.|...+.++.... ......++.++... ..+..|.+++++..+.
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 4555666665555544 34445555554422 1156677777666543
No 364
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.97 E-value=55 Score=33.20 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCCCcee--HHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHh--HHHHHHHHHHhcCCHHHHHHHhcc
Q 047146 102 IALYREMLIKGLLPNTYT--LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY--VFNTLMRLYAVCGLIKAVHKLFHF 177 (608)
Q Consensus 102 ~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 177 (608)
.++++.+.+.|..|+... -.+.+..++..|+.+ +.+.+.+.|..|+.. ....-+...++.|+.+.+..+++.
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence 344444455566555432 223333444455543 333344455444322 112234444555666666555554
No 365
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.91 E-value=14 Score=33.38 Aligned_cols=117 Identities=10% Similarity=0.038 Sum_probs=69.6
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHHcCCHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQT-EHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALL-GACKIHAKVE 511 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~ 511 (608)
.|.....++.|+..+.+.+. +.|+. .-|+.=+..+.+..+++.+..--.+. .+.||.+--...+ .+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 46666778888887777655 56765 34455666677777787776655544 6667766544444 4456677788
Q ss_pred HHHHHHHHHHhcC-----CCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 512 LAEIVMENLVRFE-----PEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 512 ~a~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
+|+..++++..+. |....+...|..+--..=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888886542 222234555544433333334444444444
No 366
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.70 E-value=8 Score=21.90 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047146 508 AKVELAEIVMENLVRFEPEGDGAYILMTNI 537 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 537 (608)
|+.+.+..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467888889999988888888777776654
No 367
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=72.53 E-value=42 Score=31.91 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 047146 512 LAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~ 529 (608)
.|.+...++.+.+|.-|.
T Consensus 380 ~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHhhcCCCCcH
Confidence 356667777788877663
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.90 E-value=7.3 Score=21.41 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
.|..+...+...++++.|...++..++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5667778889999999999999999887663
No 369
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=71.72 E-value=1.2e+02 Score=30.90 Aligned_cols=239 Identities=8% Similarity=-0.022 Sum_probs=132.0
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC------hHHHHHHHHHHHHcC-C-CCchhHHHHHHHHhHhcCCH-HH
Q 047146 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW------LELGKWVHTYLDKNH-I-NTDGFIGNALVDMYAKCGRI-DQ 378 (608)
Q Consensus 308 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~------~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~-~~ 378 (608)
....+|++..+. .|+...+...|..|...-. ......+++.....+ . +.....|..+.-++.+.... +-
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 344556655543 4566666667776654332 233333444443322 2 23345556666666655543 44
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHcC-ChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-HHHH--HHHHHHhH
Q 047146 379 AFGVFRSMKCRDVYSYTAMIVGLAIHG-KAWK-ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL-VEEG--CKHFLDMS 453 (608)
Q Consensus 379 A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a--~~~~~~~~ 453 (608)
|..+..+....+...|-.-++...+.. +.+- -.+++......-..+-...|+... .|+ ++.. ..++....
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 555555666677777777666665332 2221 122233333321122222333333 122 1111 12233333
Q ss_pred hhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 454 RVYNLQPQT-EHYGCMVDLFGRAGLIREALDLIKSM-PL-VPDAFVWGALLGAC--KIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 454 ~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
+ -..|+. ..-+.+++-+.+.|-.++|...+... .. .|+...+..++..- ...-+...++..++.+..-...++
T Consensus 453 s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 S--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred H--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 2 233444 34467888888999999999999888 23 34778888887542 122237778888888876644777
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..|......-...|..+.+-.++.+..
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHH
Confidence 788877777778888887777655543
No 370
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=70.70 E-value=93 Score=33.52 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=15.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 533 LMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.-+.+|--+|+++.+.+++.+....
T Consensus 432 dAi~Ly~La~~~d~vl~lln~~Ls~ 456 (613)
T PF04097_consen 432 DAILLYHLAEEYDKVLSLLNRLLSQ 456 (613)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344455566778888887777643
No 371
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.84 E-value=3 Score=39.51 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=37.1
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAF-VWGALLGACKIHAKVELAEI 515 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~ 515 (608)
..|.++.|++.|...+. --++....|.--..++.+.++...|++-+... .+.||.. -|..--.+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34555555555555443 11223333434444445555555555444443 3334322 22222233344455555555
Q ss_pred HHHHHHhcC
Q 047146 516 VMENLVRFE 524 (608)
Q Consensus 516 ~~~~~~~~~ 524 (608)
.+..+.+++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 555554443
No 372
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.39 E-value=34 Score=27.45 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 409 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
+..+-+..+....+.|++......+.+|.+.+++..|.++|+.+..+ ..+....|..+++ +-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHHh
Confidence 45555666677778999999999999999999999999999988774 3343345655543 444555555
Q ss_pred CC
Q 047146 489 PL 490 (608)
Q Consensus 489 ~~ 490 (608)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 43
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.19 E-value=64 Score=30.14 Aligned_cols=87 Identities=13% Similarity=0.026 Sum_probs=41.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH-----
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA----- 371 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----- 371 (608)
|.+++..++|.+++...-+.-+.--+........-|-.|++.+....+.++-....+..-.-+..-|.++++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 556666677766666554433221111122233333345555555555555554444322222223455554443
Q ss_pred hcCCHHHHHHHH
Q 047146 372 KCGRIDQAFGVF 383 (608)
Q Consensus 372 ~~g~~~~A~~~~ 383 (608)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346777776665
No 374
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=68.04 E-value=2.2e+02 Score=32.44 Aligned_cols=246 Identities=10% Similarity=-0.033 Sum_probs=126.7
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHH
Q 047146 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264 (608)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 264 (608)
+|+..-...+..+.+.+. +++...+...... +|...-...+.++...+........+...++. +|..+-..
T Consensus 633 ~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~-----~d~~VR~~ 703 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS-----PDPVVRAA 703 (897)
T ss_pred CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC-----CCHHHHHH
Confidence 455555555666655554 3344444444432 23333233333443332211112223233322 25566666
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHH-
Q 047146 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLEL- 343 (608)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~- 343 (608)
.+.++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...+..+.
T Consensus 704 A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~ 775 (897)
T PRK13800 704 ALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAP 775 (897)
T ss_pred HHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccch
Confidence 66666554321 12234445556666655556666665544322 12222 24555555666666666554432
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH-HHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047146 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF-GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422 (608)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 422 (608)
+...+..+.+ .++..+-...+.++.+.|..+.+. .+...+.+++...-...+.++...+. +++...+..+.+
T Consensus 776 ~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~--- 848 (897)
T PRK13800 776 AGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT--- 848 (897)
T ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---
Confidence 2233333332 345667677788888888765543 34455556666666667777777665 456666666664
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 423 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.|+...-...+.++.+......+...+..+.+
T Consensus 849 D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 56666666667777665333455555665555
No 375
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.89 E-value=18 Score=37.16 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=67.8
Q ss_pred hccccHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQPQ--TEHYGCMVDLFGRAGLIREALDLIKSM-PL-VPDAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~ 512 (608)
...|+...|...+..+.. ..|. -...-.|...+.+.|...+|-.++.+. .+ ...+.++-.+.+++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 445788888877776643 3442 223445667777777778888777655 22 3355677777788888888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHH
Q 047146 513 AEIVMENLVRFEPEGDGAYILMTNI 537 (608)
Q Consensus 513 a~~~~~~~~~~~p~~~~~~~~l~~~ 537 (608)
|++.++.+.++.|+++.+-..|..+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999988888888888665555443
No 376
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.68 E-value=1.3e+02 Score=29.73 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=83.0
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---------CCCCCHH
Q 047146 363 GNALVDMYAKCGRIDQAFGVFRSMKC------RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV---------GIEPDEV 427 (608)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------g~~p~~~ 427 (608)
+.-+.+.|..+|+++.|.+.+.+..+ .-+..|..+|..-...|++.....+..+.... .+.+-..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 35677888899999999999988653 23456667777777778888777777766553 1222223
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcC-----CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYN-----LQP-QTEHYGCMVDLFGRAGLIREALDLIKSMPL----VPDAFVW 497 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~~~~~ 497 (608)
.+..+...+ .++++.|.+.|-....+.. +.| |+.+|. .+.+++-.++-+--+.+.....+ .-++..+
T Consensus 233 C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 233 CAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 344333333 3477777766655543222 223 333333 33344444433333333333211 1134445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 047146 498 GALLGACKIHAKVELAEIVMENLV 521 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~ 521 (608)
..+...| .+++....++++++.
T Consensus 310 ~il~~fy--~sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 310 EILFKFY--SSKYASCLELLREIK 331 (466)
T ss_pred HHHHHHh--hhhHHHHHHHHHHhc
Confidence 4554444 345666666665554
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.18 E-value=14 Score=26.77 Aligned_cols=45 Identities=7% Similarity=0.034 Sum_probs=28.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHhCCChHHHHHH
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGA---YILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~ 550 (608)
...+.+.|...+.++++..++.+.- .-.|+.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777766555443 33555666677777666654
No 378
>PHA02875 ankyrin repeat protein; Provisional
Probab=67.00 E-value=1.5e+02 Score=30.02 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHCCC
Q 047146 409 KALDIFSEMSQVGI 422 (608)
Q Consensus 409 ~A~~~~~~m~~~g~ 422 (608)
+..+-++.|....+
T Consensus 298 ~C~~ei~~mk~~~i 311 (413)
T PHA02875 298 KCIIELRRIKSEKI 311 (413)
T ss_pred HHHHHHHHHHhhcc
Confidence 45555666666433
No 379
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=66.58 E-value=1.4e+02 Score=29.47 Aligned_cols=221 Identities=11% Similarity=0.039 Sum_probs=132.0
Q ss_pred cCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-c---c
Q 047146 373 CGRIDQAFGVFRSMKC---------RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-H---A 439 (608)
Q Consensus 373 ~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~---~ 439 (608)
.++.+.|.+-+-...+ .+...+..++..|...++++.--+...-+....-+ .......++.-|. . .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-lk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-LKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccCC
Confidence 5677777665544432 23445666777788888887766655555433211 1122333333221 1 1
Q ss_pred ccHHHH---HHHHHHhHhhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-----CH---HHHHHHHHHHH
Q 047146 440 GLVEEG---CKHFLDMSRVYNLQPQ---TEHYGCMVDLFGRAGLIREALDLIKSMPLVP-----DA---FVWGALLGACK 505 (608)
Q Consensus 440 g~~~~a---~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-----~~---~~~~~l~~~~~ 505 (608)
.+.+-- .+.++...+ -.+-.. ...-..|...+-..|++++|..++.+.++.. -. ....--++.|.
T Consensus 104 ~d~~~k~~li~tLr~Vte-gkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG 182 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTE-GKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCL 182 (439)
T ss_pred CCchhHHHHHHHHHHhhc-CceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 122222 222332222 111111 1222456778889999999999999884321 00 11112236788
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCC-------chHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEE
Q 047146 506 IHAKVELAEIVMENLVRFEPEGD-------GAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 578 (608)
..+|+-.|.-+-+++....-+.+ ..|..++.+..+.+.+=++-+.++..-+.|..+...--|+.+-..+-.|+
T Consensus 183 ~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 183 LRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 89999999988888876643333 36888999999999999999999999887765554445766666666665
Q ss_pred eCCCCCCChhHHHHHHHHHH
Q 047146 579 KGDKSHPKTLEIYKLLDEIM 598 (608)
Q Consensus 579 ~~~~~~p~~~~~~~~l~~~~ 598 (608)
.. .|.+++....+.+..
T Consensus 263 ~L---Ap~dneQsdll~~is 279 (439)
T KOG1498|consen 263 VL---APHDNEQSDLLARIS 279 (439)
T ss_pred ee---cCCCcHHHHHHHHHh
Confidence 54 477777777776654
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.45 E-value=26 Score=36.06 Aligned_cols=136 Identities=14% Similarity=0.038 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHhccc--cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHHH
Q 047146 423 EPDEVTFVGVLSACSHAG--LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP--DAFVW 497 (608)
Q Consensus 423 ~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~ 497 (608)
-|+..+..+++.-....- .-+-|-.++..|.. ...|--...|...-.+.-.|+...|.+.+... ..+| ..+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 466666666555443322 23334445554433 33343333332222234568899998887776 4455 33445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
..|.....+.|..-.|..++.+.+.+.-..|-++..++++|....+++.|++.|+...+...+
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 556667777888888999999999998888888999999999999999999999998776543
No 381
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.43 E-value=32 Score=27.63 Aligned_cols=49 Identities=22% Similarity=0.220 Sum_probs=39.2
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 487 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
.+.+.|++....+.+++|.+.+|+..|.++++.+...-++....|-.++
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3477899999999999999999999999999988876555444555543
No 382
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=65.60 E-value=1e+02 Score=27.66 Aligned_cols=82 Identities=18% Similarity=0.094 Sum_probs=43.6
Q ss_pred cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChh-hHHHHHH--HHHhcCChhHHHH
Q 047146 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV-SWNSMIA--GLTHRGQFKEALD 311 (608)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~ 311 (608)
.|-+..|.--|.+.....+. -+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+=+ ++--.|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLai~P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC---cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 34444444445555544333 3556777776777777777777777776654432 1222211 1223466666666
Q ss_pred HHHHHHhC
Q 047146 312 IFRRMQGL 319 (608)
Q Consensus 312 ~~~~m~~~ 319 (608)
-|.+.-+.
T Consensus 155 d~~~fYQ~ 162 (297)
T COG4785 155 DLLAFYQD 162 (297)
T ss_pred HHHHHHhc
Confidence 55555443
No 383
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.45 E-value=45 Score=27.08 Aligned_cols=60 Identities=8% Similarity=-0.000 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRF--EPEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 491 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
+.|......-+.-..... .+..+|+.+... +...+..|...+..+...|++++|.++++.
T Consensus 63 ~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 63 KNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp TT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 345554444443322222 788888888765 566667889999999999999999999875
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.75 E-value=24 Score=25.64 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=18.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIEPDE--VTFVGVLSACSHAGLVEEG 445 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a 445 (608)
.++.++|+..|+...+.-..|.. .++..++.+++..|++.+.
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~ 62 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREM 62 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554443222211 1444444555555554444
No 385
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.75 E-value=2.1e+02 Score=30.91 Aligned_cols=163 Identities=15% Similarity=0.092 Sum_probs=83.9
Q ss_pred chHHHHHHHHH-hCCCchHHHHHHHHHHHCCCCCCHh-----HHHHHHHHhhccCCchHHHHHHHHHHHccCC--CCCch
Q 047146 188 VSWTTLIQAYV-KMDYPTEAILSFFDMCQANLRPDGM-----ILVIVLSACSKLGDLSLGIKIHRYITDNHFN--LSPDV 259 (608)
Q Consensus 188 ~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~p~~ 259 (608)
.++--+...+. ...+++.|...+.+.....-+++-. .-..+++.+.+.+... |...++..++.--. ..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34444555555 5667888888887664432222221 1223344555555444 77777776664211 11112
Q ss_pred HHHHHH-HHHHHhcCChHHHHHHHccCC-----CCC--hhhHHHHHHHHH--hcCChhHHHHHHHHHHhCCC--------
Q 047146 260 FIHNAL-IDMYLKCGNIPSARKVFDEMP-----VKN--VVSWNSMIAGLT--HRGQFKEALDIFRRMQGLGL-------- 321 (608)
Q Consensus 260 ~~~~~l-i~~~~~~g~~~~A~~~~~~~~-----~~~--~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~-------- 321 (608)
..+.-+ +..+...++...|.+.++.+. ..| ...+-.++.+.. +.+..+++++.++++.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 233333 333333478888888777664 122 223333333333 44556777777776643221
Q ss_pred -CCChHHHHHHHHHHh--ccCChHHHHHHHHHH
Q 047146 322 -KPDDFTLVCVLNSCA--NIGWLELGKWVHTYL 351 (608)
Q Consensus 322 -~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 351 (608)
.|-..++..++..++ ..|++..+...++.+
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234456666666654 566666666655544
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.80 E-value=18 Score=22.96 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=13.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQV 420 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~ 420 (608)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445556666666666666665543
No 387
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.72 E-value=69 Score=24.99 Aligned_cols=78 Identities=10% Similarity=0.094 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047146 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 420 (608)
.++|..|.+.+...+. ....+.-.-+..+.+.|++++|...=.....||...|-++- -.+.|..+++...+.++...
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 4455555555554442 12222222334456677777774444444456777665553 23566666777777666655
Q ss_pred C
Q 047146 421 G 421 (608)
Q Consensus 421 g 421 (608)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.62 E-value=1.3e+02 Score=28.17 Aligned_cols=113 Identities=12% Similarity=-0.099 Sum_probs=55.8
Q ss_pred hcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH----HHHCCCCCCHhHHHHHHHHhhccCCch
Q 047146 164 VCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD----MCQANLRPDGMILVIVLSACSKLGDLS 239 (608)
Q Consensus 164 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~t~~~ll~~~~~~~~~~ 239 (608)
+.+++++|.+++.. + ...+.+.|+...|-++-.- ..+.+.++|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~----G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS----G-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHH----H-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHH----H-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 45667777776654 2 2334556665555444333 333456666665555555554433211
Q ss_pred -HHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChh
Q 047146 240 -LGIKIHRYITDN---HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291 (608)
Q Consensus 240 -~a~~~~~~~~~~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 291 (608)
.-.++.+.+++. +....-|+..+..+...|.+.|++.+|+..|-.-..++..
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~ 122 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAF 122 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHH
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHH
Confidence 223333333332 2122226788888999999999999888877554433333
No 389
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.62 E-value=1.3e+02 Score=28.31 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCChH
Q 047146 260 FIHNALIDMYLKCGNIPSARKVFDEMPV---KNVVSWNSMIAGLTHRGQFKEALDIFRRMQG-----LGLKPDDF 326 (608)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ 326 (608)
.+++.....|..+|.+.+|.++-++... -+...|-.++..++..|+--.+..-++++.+ .|+..+..
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 3455666778888999999888887763 3566788888899999987788777777743 35555443
No 390
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.59 E-value=35 Score=28.33 Aligned_cols=63 Identities=16% Similarity=0.065 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 478 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
.+.|.++.+-|| ...............|++..|.++.+.++..+|++.......+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456777777775 233444455667789999999999999999999999888888888876654
No 391
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.30 E-value=68 Score=33.38 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 047146 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233 (608)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 233 (608)
..+.+...+.+.|-.++|+++-.. ||- -.....+.|+.+.|.++..+. -+..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D-------~d~-----rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD-------PDQ-----RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC-------hhh-----hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 445555556666666666554322 111 122233455555555554443 12344555555555
Q ss_pred ccCCchHHHHHHHHH
Q 047146 234 KLGDLSLGIKIHRYI 248 (608)
Q Consensus 234 ~~~~~~~a~~~~~~~ 248 (608)
+.+++..|.+.+...
T Consensus 678 ~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 678 SAGELPLASECFLRA 692 (794)
T ss_pred hcccchhHHHHHHhh
Confidence 556665555555443
No 392
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=61.84 E-value=1.8e+02 Score=29.22 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=48.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCR---DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 422 (608)
..|+.-|...|++.+|.+.++++.-| ..+.+.+++.+.-+.|+-+..+.++++.-..|+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 46788899999999999999988765 457888999999998888878888877766653
No 393
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.72 E-value=95 Score=25.92 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=43.8
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcC---------CCChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMK---------CRDVYSYTAMIVGLAIHGK-AWKALDIFSEMSQVGIEPDEVTFVGVL 433 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~ll 433 (608)
|+++.-....++......+++.+. ..+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444455555555444442 1244566777776654444 234566677777666677777777777
Q ss_pred HHHhcc
Q 047146 434 SACSHA 439 (608)
Q Consensus 434 ~~~~~~ 439 (608)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 776654
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.70 E-value=34 Score=30.26 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 047146 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525 (608)
Q Consensus 489 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 525 (608)
...|++.++..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567888888888888888888888888888888888
No 395
>PRK10941 hypothetical protein; Provisional
Probab=61.07 E-value=70 Score=30.08 Aligned_cols=64 Identities=13% Similarity=-0.004 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
+.+-.+|.+.++++.|++..+.+ .+.| |+.-+.--.-.|.+.|.+..|..-++..++..|+++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 34556677788888888887777 4455 4555666666678888888888888888888888763
No 396
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.00 E-value=1.2e+02 Score=32.67 Aligned_cols=182 Identities=16% Similarity=0.253 Sum_probs=97.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH----------HHHHHHHHHhccCChHHHHHHHHHHHHc-C-CCCc
Q 047146 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF----------TLVCVLNSCANIGWLELGKWVHTYLDKN-H-INTD 359 (608)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~ 359 (608)
+...++-.|....+++..+++.+.++.. ||.. .|...+.---+.|+-++|..+.-.+.+. | +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4455666677777888888888877663 3322 2222333333456666666655444432 2 2332
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHH
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV---TFVGVLSAC 436 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~ 436 (608)
+||-+|++ ++.|- +-+.|...+..+.|.++|++.-+ +.|+.. .+..|+.+.
T Consensus 280 ---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 280 ---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred ---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 34444443 22221 11234444556778888888776 677664 344444332
Q ss_pred hccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIV 516 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 516 (608)
.+ .++...+ +.. .--.|-..+++.|.++.-.++|+-. + .+.+-.-.+++.+|.+.
T Consensus 334 G~--~Fens~E----lq~---------IgmkLn~LlgrKG~leklq~YWdV~-------~---y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLE----LQQ---------IGMKLNSLLGRKGALEKLQEYWDVA-------T---YFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHH----HHH---------HHHHHHHHhhccchHHHHHHHHhHH-------H---hhhhhhhccCHHHHHHH
Confidence 22 1111111 111 1112344566788877777766533 2 23444567788888888
Q ss_pred HHHHHhcCCCC
Q 047146 517 MENLVRFEPEG 527 (608)
Q Consensus 517 ~~~~~~~~p~~ 527 (608)
.++|.++.|+.
T Consensus 389 ae~mfKLk~P~ 399 (1226)
T KOG4279|consen 389 AEMMFKLKPPV 399 (1226)
T ss_pred HHHHhccCCce
Confidence 88888887775
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.97 E-value=1.7e+02 Score=29.19 Aligned_cols=53 Identities=11% Similarity=0.010 Sum_probs=30.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccccHHHHHHHHHHhHh
Q 047146 401 LAIHGKAWKALDIFSEMSQVGIEPDEV--TFVGVLSACS--HAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 401 ~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 454 (608)
+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566777777777777765 444443 3333334433 33456677777666655
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.55 E-value=33 Score=26.05 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=35.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC----C-----CchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 504 CKIHAKVELAEIVMENLVRFEPE----G-----DGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..+.|++..|.+.+.+..+.... . ......++.+....|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35677777777666666544211 1 12344567778888999999988888764
No 399
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.49 E-value=42 Score=26.35 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
.-|..++.-|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588888889999999999999988877
No 400
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.50 E-value=1.4e+02 Score=27.32 Aligned_cols=50 Identities=14% Similarity=-0.008 Sum_probs=22.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..|++-++++.-..++...|.+..+|..-+.+.+..=+.++|..-|.+..
T Consensus 242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444443
No 401
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=58.63 E-value=1.3e+02 Score=26.44 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-----------CCCC----chHHHHHHHHHhCCChHHHHHHHHH
Q 047146 498 GALLGACKIHAKVELAEIVMENLVRFE-----------PEGD----GAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
-+++-.|.+..++.+++.+++.+.++. |.+. ..-+..+.++.+.|.+|-|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 346667888889999999999998753 2222 2456778889999999999999983
No 402
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.55 E-value=95 Score=31.51 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=67.9
Q ss_pred HHhHhcCCHHHHHHHHhhcC---CC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCCH--
Q 047146 368 DMYAKCGRIDQAFGVFRSMK---CR---------DVYSYTAMIVGLAIHGKAWKALDIFSEMSQ-------VGIEPDE-- 426 (608)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-------~g~~p~~-- 426 (608)
+.+.-.|++.+|.+++.... .+ .-..||.|...+.+.|.+.-+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556688888888887553 11 223467777777777777777777766653 4555532
Q ss_pred ---------HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 047146 427 ---------VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473 (608)
Q Consensus 427 ---------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 473 (608)
.+|+ ..-.+...|++-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 1233 233567889999999999888874 4556677888887775
No 403
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.52 E-value=2.8e+02 Score=31.10 Aligned_cols=132 Identities=12% Similarity=0.116 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 047146 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268 (608)
Q Consensus 189 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 268 (608)
-|..|+..|...|+.++|++++.+.....-.-|.. ..+.-+.+.+.+.+.+.+ +..+.-...+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~~~---~~~Li~~y~~- 568 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLGAE---NLDLILEYAD- 568 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhccc---chhHHHHHhh-
Confidence 47888999999999999999998886531001110 011111233333333211 1111111111
Q ss_pred HHhcCChHHHHHHHccCCCCChhhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 047146 269 YLKCGNIPSARKVFDEMPVKNVVSW-NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337 (608)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 337 (608)
+.-..+.+...++|..-......+. ...+-.|......+-++..++.+....-.++..-.+.++..|..
T Consensus 569 wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 569 WVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1123444555555554111000111 11233456667777788888887766555666666666666653
No 404
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.28 E-value=2e+02 Score=28.54 Aligned_cols=54 Identities=9% Similarity=-0.057 Sum_probs=25.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccccHHHHHHHHHHh
Q 047146 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC-SHAGLVEEGCKHFLDM 452 (608)
Q Consensus 399 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~ 452 (608)
..+.+.|-+..|+++.+-+......-|......+|..| .+.++++--+++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 44555566666666655555532222333333334432 3444555454444443
No 405
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=57.33 E-value=23 Score=31.85 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=49.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 562 (608)
..+.++.+.+.+++.++.++-|.....|..++..-.++|+++.|.+-+++..+.+....
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 35678888889999999999999988999999999999999999999998887665443
No 406
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.92 E-value=80 Score=23.57 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=27.0
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 047146 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 410 (608)
..|+.+.|.++++.+. .....|...++++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577777777777777 7777777777777777665544
No 407
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.71 E-value=92 Score=25.59 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHhcc---ccHHHHHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 423 EPDEVTFVGVLSACSHA---GLVEEGCKHFLDMSRVYNLQP--QTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 423 ~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
.++..+--.+..++.+. .+..+++.+++++.+ .-.| ..+....|.-++.|.+++++++++++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 44444444444444444 345666677777664 1122 2333444556667777777777776655
No 408
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.33 E-value=1.1e+02 Score=28.76 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=50.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHC--CCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHh
Q 047146 194 IQAYVKMDYPTEAILSFFDMCQA--NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271 (608)
Q Consensus 194 i~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 271 (608)
|.+++..++|.+++...-+-.+. .++|..--. -|-.|.+.+....+.++-...++..-+- +..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq--~lp~y~~vaELyLl 165 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQ--SLPEYGTVAELYLL 165 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccC--CchhhHHHHHHHHH
Confidence 67777888888877766555432 233333333 3334667777777777776666642222 34446666665554
Q ss_pred -----cCChHHHHHHH
Q 047146 272 -----CGNIPSARKVF 282 (608)
Q Consensus 272 -----~g~~~~A~~~~ 282 (608)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 46777776665
No 409
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.01 E-value=1.4e+02 Score=27.38 Aligned_cols=117 Identities=11% Similarity=-0.044 Sum_probs=68.2
Q ss_pred hHhcCCHHHHHHHHhhcC--CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHH
Q 047146 370 YAKCGRIDQAFGVFRSMK--CRDV-YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEG 445 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 445 (608)
|....++..|...+.+.. .|++ .-|+.-+..+.+.++++.+..--++..+ +.||.+ ....+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 445566777777776554 4555 4456667777778888887777776666 677766 333444456666777888
Q ss_pred HHHHHHhHh---hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 446 CKHFLDMSR---VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 446 ~~~~~~~~~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
+..+.+... ...+.+.......|.++=-+.=...+..++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 777777633 1233344445555544433333333444444443
No 410
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.62 E-value=3.5e+02 Score=30.32 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCc---chHHHHHHHHHhCCCc--hHHHHHHHHHHHCCCCCCHhHHHH-
Q 047146 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDL---VSWTTLIQAYVKMDYP--TEAILSFFDMCQANLRPDGMILVI- 227 (608)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~t~~~- 227 (608)
-|..|+..|...|..++|+++|.......-.-|. ..+--+++.+.+.+.. +-.++.-.........-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 5889999999999999999999886552100111 1123344444444443 333433333332211100001111
Q ss_pred -----------HHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHh
Q 047146 228 -----------VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271 (608)
Q Consensus 228 -----------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 271 (608)
.+-.+......+.+...++.+....-. ++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~--~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRL--TSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccc--cchHHHHHHHHHHHH
Confidence 111233444556666666666654222 256666666666664
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.72 E-value=49 Score=29.24 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=17.7
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 458 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
..|+..+|..++.++...|+.++|.+..+++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555555555555
No 412
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=53.68 E-value=28 Score=32.75 Aligned_cols=80 Identities=9% Similarity=0.060 Sum_probs=56.0
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 047146 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGA-LLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533 (608)
Q Consensus 457 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 533 (608)
.+..|+..|...+.-..+.|.+.+...++.+. ...| |...|-. .---+..+++++.++.++.+.++++|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34456777777776666777777777777776 4455 4555543 2233567889999999999999999999987765
Q ss_pred HHH
Q 047146 534 MTN 536 (608)
Q Consensus 534 l~~ 536 (608)
...
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 443
No 413
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.52 E-value=1.3e+02 Score=25.07 Aligned_cols=53 Identities=9% Similarity=0.179 Sum_probs=38.5
Q ss_pred ChhhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCCh
Q 047146 289 NVVSWNSMIAGLTHRGQ-FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341 (608)
Q Consensus 289 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 341 (608)
+...|.+++.+..+..- ---+..+|+-|++.+.+++..-|..++.+|.+....
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 45678888888765554 345677788888877888888888888888766443
No 414
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.16 E-value=54 Score=21.18 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=22.5
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 197 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
..+.|-.+++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777666666665554
No 415
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.74 E-value=2.8e+02 Score=28.20 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=29.0
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 394 YTAMIVGLAI---HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 394 ~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
...+++++.+ .++++.|+.++.+|.+.|..|....-..+..++.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4444555544 4788889999999999888777555444444433
No 416
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=51.18 E-value=2.7e+02 Score=29.05 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=33.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCC--Chh---HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCR--DVY---SYTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
..|+.-|.+.+++++|..++..|.-. ... +.+.+.+.+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45777899999999999999988732 122 333334444444444444444444443
No 417
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.59 E-value=1e+02 Score=23.01 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=20.3
Q ss_pred hcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhH
Q 047146 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKE 308 (608)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 308 (608)
..|+.+.|.+++..++ +.+..|..++.++-..|+-+-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 3455555555555555 555555555555555554433
No 418
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.98 E-value=2.6e+02 Score=30.90 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=91.3
Q ss_pred HHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 047146 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447 (608)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 447 (608)
.....+|+++.|++.-..+. +..+|..|...-...|+.+-|...|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 44567899999998877765 567899999999999999999999888654 2333334667788888776
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
+.+.+.. ..|... ....-.-.|+.++=.++++..+..|-. |. ....+|.-++|.++.++.-..
T Consensus 720 m~~iae~----r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 720 MMKIAEI----RNDATG---QFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHh----hhhhHH---HHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhccc
Confidence 6655533 222211 111122358899999999988755422 21 234678889999998888763
No 419
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=49.81 E-value=2.3e+02 Score=26.80 Aligned_cols=114 Identities=7% Similarity=0.043 Sum_probs=78.8
Q ss_pred CHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcC--ChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccccHHHHH
Q 047146 375 RIDQAFGVFRSMKC-----RDVYSYTAMIVGLAIHG--KAWKALDIFSEMS-QVGIEPDEVTFVGVLSACSHAGLVEEGC 446 (608)
Q Consensus 375 ~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 446 (608)
.+.+|.++|+.... .|...-..+++...... ....-.++.+-+. +.|-.++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566667763221 34455555555555421 1122223333333 2345788889999999999999999999
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 447 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
+++..-....+...|...|..+++.....|+..-..+++++-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 999988763345568889999999999999999999998875
No 420
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.62 E-value=27 Score=37.87 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=43.7
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047146 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVE 511 (608)
Q Consensus 432 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 511 (608)
+|..+.+.|-.+-|..+.+.-... ......+|+++.|++.-..++ |..+|..|.......|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 344455556666555444332221 123345677777777666653 5667777777777777777
Q ss_pred HHHHHHHHHHh
Q 047146 512 LAEIVMENLVR 522 (608)
Q Consensus 512 ~a~~~~~~~~~ 522 (608)
-|+..+++...
T Consensus 690 IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 690 IAEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHHhhh
Confidence 77776666543
No 421
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=49.08 E-value=1.9e+02 Score=25.66 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 427 (608)
....+.++..+...|+++.|-+.|.-+.... ..|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 4567788888999999999999999888753 34443
No 422
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=49.03 E-value=32 Score=32.31 Aligned_cols=58 Identities=16% Similarity=0.262 Sum_probs=33.0
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 047146 473 GRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
.+.|+.++|..+|+.. ...| ++....-+....-.+++.-+|-+.+-+++...|.+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 4566777777776655 4444 23333333334444566666666666666666666543
No 423
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.91 E-value=1.1e+02 Score=22.97 Aligned_cols=62 Identities=23% Similarity=0.096 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhCCChH-HHHHHHHHH
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG--DGAYILMTNIYSSKNRWK-EALKLRKKM 554 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~m 554 (608)
|...--.+...+...|+++.|.+.+-.+++.+++. ...-..|+.++.-.|.-+ .+.+..++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 55566666677788888888888877777776543 556677777777777643 344444443
No 424
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.95 E-value=1.4e+02 Score=26.10 Aligned_cols=22 Identities=5% Similarity=-0.081 Sum_probs=13.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHH
Q 047146 194 IQAYVKMDYPTEAILSFFDMCQ 215 (608)
Q Consensus 194 i~~~~~~g~~~~a~~~~~~m~~ 215 (608)
+..|.++|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456666666666666666544
No 425
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=47.43 E-value=1.2e+02 Score=30.50 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=37.5
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 485 IKSMPLVPD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 485 ~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
|...+++|. ..++...++.+.+.+++..|..+.++++++.|... ..++|.+++....
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~--------------~a~qArKil~~~e 347 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE--------------VAEQARKILQACE 347 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH--------------HHHHHHHHHHHHC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH--------------HHHHHHHHHHHHh
Confidence 444456663 34667778888999999999999999999988753 1235677776553
No 426
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.41 E-value=1e+02 Score=29.70 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=60.5
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 047146 469 VDLFGRAGLIREALDLIKSM----PLVP--DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 542 (608)
.+-|.+..++..|...|.+. .-.| +.+.|+.=..+....|++..++.=..+++..+|....+|..=+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 45566777777777777765 1122 34455555555566788888888888888888888888877777777888
Q ss_pred ChHHHHHHHHHH
Q 047146 543 RWKEALKLRKKM 554 (608)
Q Consensus 543 ~~~~A~~~~~~m 554 (608)
++++|....++.
T Consensus 168 ~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 168 RFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHhhh
Confidence 877777666654
No 427
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.17 E-value=34 Score=30.83 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=32.1
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 473 GRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
.+.|+.+.|.+++.+. ...| ....|--+....-+.|+++.|.+.+++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455556666666555 3334 44455555555566666666666666666666655
No 428
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=45.87 E-value=2.8e+02 Score=26.54 Aligned_cols=43 Identities=9% Similarity=-0.002 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHH
Q 047146 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250 (608)
Q Consensus 208 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 250 (608)
++++.|.+.++.|.-..|..+.-.+.+.=.+.....+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4455555555666555555555555555555555555555554
No 429
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=45.69 E-value=4.2e+02 Score=28.60 Aligned_cols=49 Identities=8% Similarity=0.148 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHHhcC---CCCC-chH-----HHHHHHHHhCCChHHHHHHHHHHH
Q 047146 507 HAKVELAEIVMENLVRFE---PEGD-GAY-----ILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.|+..+..........+- |+.. ..| ..+.+.|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677777666655554432 2222 244 244556788899999998887764
No 430
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.68 E-value=91 Score=23.63 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=18.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 500 LLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
+.......|++++|...+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445567788888888888888866
No 431
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.45 E-value=35 Score=32.19 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=31.1
Q ss_pred CCcch-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH
Q 047146 185 RDLVS-WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI 227 (608)
Q Consensus 185 ~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 227 (608)
+|..+ ||..|...++.||+++|+.++++..+.|+.--..||..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34433 67888888888888888888888888887655555543
No 432
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=45.13 E-value=2.8e+02 Score=26.51 Aligned_cols=77 Identities=9% Similarity=0.070 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh----------cCCHHHH
Q 047146 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK----------CGRIDQA 379 (608)
Q Consensus 310 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~A 379 (608)
.++++.|.+.++.|.-..|..+.-.+++.=.+..+..+|+.+...... +..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 456667777777777777777777777777777777777776543222 3344443332 3555555
Q ss_pred HHHHhhcCCCCh
Q 047146 380 FGVFRSMKCRDV 391 (608)
Q Consensus 380 ~~~~~~~~~~~~ 391 (608)
.++++.-+.-|+
T Consensus 338 mkLLQ~yp~tdi 349 (370)
T KOG4567|consen 338 MKLLQNYPTTDI 349 (370)
T ss_pred HHHHhcCCCCCH
Confidence 555555444343
No 433
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.45 E-value=34 Score=23.59 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 531 YILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
...++.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455666777777777777776664
No 434
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=43.64 E-value=1e+02 Score=28.80 Aligned_cols=56 Identities=25% Similarity=0.129 Sum_probs=49.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 501 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
-.++...++++.|....++...++|.++.....-+-+|.+.|...-|++-++...+
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 35678889999999999999999999998888899999999999999999888654
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.32 E-value=34 Score=27.88 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=22.5
Q ss_pred CCCccH-HHHHHHHHHCCCCCCceeHHHHHHHH
Q 047146 96 ANPLEA-IALYREMLIKGLLPNTYTLPYVLKAC 127 (608)
Q Consensus 96 ~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~ 127 (608)
.|.-.. ..+|.+|.++|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 344445 889999999998887 577777765
No 436
>PRK14700 recombination factor protein RarA; Provisional
Probab=43.11 E-value=2.9e+02 Score=26.43 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=37.8
Q ss_pred hHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC
Q 047146 292 SWNSMIAGLTH---RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340 (608)
Q Consensus 292 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 340 (608)
.+--+|+++.+ ..|.+.|+-.+-+|++.|-.|....-..++.++-..|.
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 34445666554 57899999999999999988888888888887766663
No 437
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=42.48 E-value=3.3e+02 Score=26.52 Aligned_cols=133 Identities=10% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHH
Q 047146 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344 (608)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 344 (608)
+.+.+++.++-+.+..+-+.+..-......++..++-...-.+...+.+.+..+.. ||......++++.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhHH
Q ss_pred HHHHHHHHHcCCCCchhHHHHH-HHHhHhcCCHHHHHHHHhhcCCCC-hhHHHHHHH
Q 047146 345 KWVHTYLDKNHINTDGFIGNAL-VDMYAKCGRIDQAFGVFRSMKCRD-VYSYTAMIV 399 (608)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~ 399 (608)
...+..+.......+..+..++ .+++.-..+.+.+..+++++-..+ ...|+.+..
T Consensus 250 ~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 250 AILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred HHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
No 438
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.41 E-value=1.2e+02 Score=32.13 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=42.9
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhc-CCCCChhHHHHHHHHHHhcCCH------HHHHHHHHhCCCCCCHHHHHHHHHH
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVY-NLQPQTEHYGCMVDLFGRAGLI------REALDLIKSMPLVPDAFVWGALLGA 503 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~p~~~~~~~l~~~ 503 (608)
+++.+|...|++..+.++++...... |-+--...||..++.+.+.|.+ +.|.++++...+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 56667777777777777766665511 1111234566666666666654 2455555555555566666666655
Q ss_pred HH
Q 047146 504 CK 505 (608)
Q Consensus 504 ~~ 505 (608)
..
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 43
No 439
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.70 E-value=1.8e+02 Score=25.39 Aligned_cols=13 Identities=8% Similarity=0.163 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhHh
Q 047146 442 VEEGCKHFLDMSR 454 (608)
Q Consensus 442 ~~~a~~~~~~~~~ 454 (608)
++.|..+|+.+.+
T Consensus 85 LESAl~v~~~I~~ 97 (200)
T cd00280 85 LESALMVLESIEK 97 (200)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666665555
No 440
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.33 E-value=4e+02 Score=27.06 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=56.9
Q ss_pred CCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccC---CCCChhhHHH
Q 047146 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM---PVKNVVSWNS 295 (608)
Q Consensus 219 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ 295 (608)
..+......++..+ .|+...+..+++.+...+..+ +... ..+++... ..++...+..
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I--t~~~----------------v~~~~~~~~~~~d~~~~~~~~ 232 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSI--TLEL----------------LEEALQKRAARYDKDGDEHYD 232 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC--CHHH----------------HHHHHhhhhhccCCCccHHHH
Confidence 44555555555443 577777777777665431111 2221 11222111 1122233445
Q ss_pred HHHHHHh---cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 047146 296 MIAGLTH---RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339 (608)
Q Consensus 296 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 339 (608)
+++++.+ .++.+.|+..+..|.+.|..|....-..+..++-..|
T Consensus 233 ~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 233 LISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 5555554 4789999999999999998887666666665554443
No 441
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.47 E-value=3.5e+02 Score=26.11 Aligned_cols=97 Identities=13% Similarity=-0.034 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHhHhhcCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNL---QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
-.+.|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.+...+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 366778888887762111 33555666667777777876666666666544557777788888888888888888888
Q ss_pred HHHHhcC-CCCCchHHHHHHH
Q 047146 518 ENLVRFE-PEGDGAYILMTNI 537 (608)
Q Consensus 518 ~~~~~~~-p~~~~~~~~l~~~ 537 (608)
+.+..-. -.....+..+..+
T Consensus 225 ~~~l~~~~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIRYVLAGL 245 (324)
T ss_dssp HHHHCTSTS-TTTHHHHHHHH
T ss_pred HHHcCCcccccHHHHHHHHHH
Confidence 8888743 2223344444444
No 442
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.22 E-value=1e+02 Score=19.91 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=22.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 434 (608)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777766666554
No 443
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=40.13 E-value=2.6e+02 Score=24.63 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=86.2
Q ss_pred CCCCCcchHHHHHHHHHhCCC----chHHHHHHHHHHHCCCCCCHh----HHHHHHHHhhccCCchHHHHHHHHHHHccC
Q 047146 182 QAQRDLVSWTTLIQAYVKMDY----PTEAILSFFDMCQANLRPDGM----ILVIVLSACSKLGDLSLGIKIHRYITDNHF 253 (608)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 253 (608)
|...|...+|.++..+.+..- .+-++++=.+....++.++-. ....-+..|-..||+..--.+|-.+...
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g-- 80 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG-- 80 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh--
Confidence 455677778888777665443 333444444444445544332 2223344555566655544444433321
Q ss_pred CCCCchHHHHHHHHHHHhcCChHH--------HHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 047146 254 NLSPDVFIHNALIDMYLKCGNIPS--------ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325 (608)
Q Consensus 254 ~~~p~~~~~~~li~~~~~~g~~~~--------A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 325 (608)
+.++++ |+.+.++-.++..+.|-....+-++.-+.+++-+.|- .
T Consensus 81 ------------------ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------G 132 (233)
T PF14669_consen 81 ------------------CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------G 132 (233)
T ss_pred ------------------cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------h
Confidence 222221 2222333333344455555555555544444333221 1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCC--------------CCchhHHHHHHHHhHhcCCHHHHHHHHhh
Q 047146 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHI--------------NTDGFIGNALVDMYAKCGRIDQAFGVFRS 385 (608)
Q Consensus 326 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 385 (608)
..=.+++-.|.+..++.+++++++.+.+..+ .+--.+.|.....+.++|.++.|..++++
T Consensus 133 RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 133 RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 1123445556666667777766666543322 23334556666677777777777777664
No 444
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.32 E-value=3.3e+02 Score=25.52 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=63.0
Q ss_pred HHhcCChhHHHHHH----HHHHhCCCCCChHHHHHHHHHHhccCChH-HHHHHHHHHH---HcC--CCCchhHHHHHHHH
Q 047146 300 LTHRGQFKEALDIF----RRMQGLGLKPDDFTLVCVLNSCANIGWLE-LGKWVHTYLD---KNH--INTDGFIGNALVDM 369 (608)
Q Consensus 300 ~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~---~~~--~~~~~~~~~~li~~ 369 (608)
+.+.|+...|.++- +-..+.+.++|......++..+...+.-+ .-..+.+.++ +.+ ..-++.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 44555554444332 33333455556555555555444332211 1112222221 222 23466777888889
Q ss_pred hHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 047146 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
|.+.|++.+|+..|-.-..++...+..++.-....|...++ +... ...+--|...+++..|...+
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi-~RaVL~yL~l~n~~~A~~~~ 164 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFI-ARAVLQYLCLGNLRDANELF 164 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHH-HHHHHHHHHTTBHHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHH-HHHHHHHHHhcCHHHHHHHH
Confidence 99999999998877554433333332233222222222222 1111 22223355567788887777
Q ss_pred HHhHh
Q 047146 450 LDMSR 454 (608)
Q Consensus 450 ~~~~~ 454 (608)
....+
T Consensus 165 ~~f~~ 169 (260)
T PF04190_consen 165 DTFTS 169 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76665
No 445
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=39.24 E-value=3.7e+02 Score=26.12 Aligned_cols=123 Identities=9% Similarity=-0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 047146 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKI---HAKVELAEIV 516 (608)
Q Consensus 442 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~---~~~~~~a~~~ 516 (608)
.+.-..+++++.+ ..+.+...+..++..+.+..+.++..+.++++ ...-+...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~--~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALK--HNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Q ss_pred HHHHHhcCCCCC------------------chHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCcee
Q 047146 517 MENLVRFEPEGD------------------GAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566 (608)
Q Consensus 517 ~~~~~~~~p~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 566 (608)
+.+.++.-.... .++..+...+..+|..+.|..+++.+.+-++-..+...
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~ 192 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLS 192 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccc
No 446
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.79 E-value=1.9e+02 Score=22.68 Aligned_cols=27 Identities=11% Similarity=0.475 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047146 292 SWNSMIAGLTHRGQFKEALDIFRRMQG 318 (608)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 318 (608)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888889999999999888876
No 447
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.49 E-value=53 Score=22.64 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 394 YTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 394 ~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
.-.+|.+|.+.|++++|.++++++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33457777778888888777777654
No 448
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.09 E-value=45 Score=27.18 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=23.2
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 047146 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSAC 232 (608)
Q Consensus 199 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 232 (608)
..|.-.+|-.+|.+|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667888899999999888775 55665543
No 449
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.87 E-value=2.2e+02 Score=23.09 Aligned_cols=43 Identities=12% Similarity=0.219 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHc
Q 047146 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283 (608)
Q Consensus 240 ~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 283 (608)
.+.++|..|...+++.. -...|......+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~-~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTK-LALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTT-BHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHH-HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 78888888888877753 46677777888888888888888775
No 450
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=37.62 E-value=4.5e+02 Score=26.64 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=55.7
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 358 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
++..+-..-+.++...+..+..-.+..-....|...-..-+.+....|. .+|...+..... .|+......+.....
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~la 234 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLA 234 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHH
Confidence 3444444455555555544333333333344555555666666666666 555555554332 222222222222222
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP 489 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 489 (608)
..| -+++...+..+.++ +. +-...+.++.+.|+...+.-+.+.|.
T Consensus 235 l~~-~~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 235 VAG-GPDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred hCC-chhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 222 22444444444431 22 34455666666666666555555553
No 451
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.42 E-value=6.2e+02 Score=28.20 Aligned_cols=65 Identities=8% Similarity=0.023 Sum_probs=31.0
Q ss_pred HHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCC
Q 047146 443 EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP--DAFVWGALLGACKIHAK 509 (608)
Q Consensus 443 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~ 509 (608)
..+...++-... ..-.-+...+|.++..|++..+-+ ..-.++..+..+ ..+-....++.|.+.+.
T Consensus 610 ~~~i~yl~f~~~-~l~~~~~~ihn~ll~lya~~~~~~-ll~~le~~~~~~~~~~YDl~~alRlc~~~~~ 676 (911)
T KOG2034|consen 610 NQAIRYLEFCIE-VLGMTNPAIHNSLLHLYAKHERDD-LLLYLEIIKFMKSRVHYDLDYALRLCLKFKK 676 (911)
T ss_pred HHHHHHHHHHHH-hccCcCHHHHHHHHHHhhcCCccc-hHHHHHHHhhccccceecHHHHHHHHHHhCc
Confidence 344444444433 122346677888888887655433 333333332222 22233344566655554
No 452
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=37.38 E-value=6.3e+02 Score=28.21 Aligned_cols=217 Identities=14% Similarity=0.037 Sum_probs=120.5
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchh-------HHHHHH-HHhHhcCCHHHHHHHHhhcC--------CCChhHHHHHH
Q 047146 335 CANIGWLELGKWVHTYLDKNHINTDGF-------IGNALV-DMYAKCGRIDQAFGVFRSMK--------CRDVYSYTAMI 398 (608)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li-~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li 398 (608)
.....++++|..+..++...-..|+.. .+++|- ......|+++.|.++-+... ...++.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888776543232211 222221 12234688888888776543 23567788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHH--HHhcccc--HHHHHHHHHHhHhhcCCCCC-----hhHHH
Q 047146 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEV---TFVGVLS--ACSHAGL--VEEGCKHFLDMSRVYNLQPQ-----TEHYG 466 (608)
Q Consensus 399 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~--~~~~~g~--~~~a~~~~~~~~~~~~~~p~-----~~~~~ 466 (608)
.+..-.|++++|..+.++..+..-.-+.. .|..+.. .+..+|. ..+....|............ ..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88889999999999887776542223332 2333322 3666773 33334444444332211111 23444
Q ss_pred HHHHHHHhcCCHHHHHH----HHHhC-CCCCCH--HHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CchHHHH-
Q 047146 467 CMVDLFGRAGLIREALD----LIKSM-PLVPDA--FVW--GALLGACKIHAKVELAEIVMENLVRFEPEG--DGAYILM- 534 (608)
Q Consensus 467 ~l~~~~~~~g~~~~A~~----~~~~~-~~~p~~--~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l- 534 (608)
.+..++.+ .+.+.. -++-. ...|.. ... ..|.......|+.+.|...++++..+...+ ...|.+.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 45555554 333322 22211 122222 222 255677889999999999999998764333 2222222
Q ss_pred ----HHHHHhCCChHHHHHHHHHH
Q 047146 535 ----TNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 535 ----~~~~~~~g~~~~A~~~~~~m 554 (608)
.......|+.+++.....+-
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhc
Confidence 22234678888887777664
No 453
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.25 E-value=4.9e+02 Score=26.98 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 047146 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334 (608)
Q Consensus 294 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 334 (608)
..++.+ ...++++.|+.++.+|...|..|....-..+..+
T Consensus 248 ~~li~s-i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~ 287 (472)
T PRK14962 248 RDYINA-IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDL 287 (472)
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344443 3568899999999999998877776654444433
No 454
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.05 E-value=3.3e+02 Score=24.94 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=32.2
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 047146 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427 (608)
Q Consensus 381 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 427 (608)
.+|+-..+|.+.....++..|. .++.++|.+++.++.+.|..|...
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 3444444567766777776655 467889999999998888887543
No 455
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.02 E-value=71 Score=30.28 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 433 (608)
.-|+..|..-.+.|+.++|+.++++.++.|+.--..+|...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 346788888888899999999999988888765555554433
No 456
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=35.90 E-value=2.4e+02 Score=22.92 Aligned_cols=70 Identities=10% Similarity=0.026 Sum_probs=42.1
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 047146 480 EALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF--EPEGDGAYILMTNIYSSKNRWKEALKLRK 552 (608)
Q Consensus 480 ~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (608)
++.+.|... ..+.|+.....-+.-....++ ...+|..+.+. +...+..|...+..+...|++.+|.++++
T Consensus 51 rc~~~f~~~~~YknD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 51 RCIRYFEDDERYKNDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334444333 334455443333322222233 56677777654 45556678888999999999999998886
No 457
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.55 E-value=5.1e+02 Score=26.66 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=43.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH---HhCCCccCCceeE
Q 047146 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM---KERKVKKTPGCSL 567 (608)
Q Consensus 501 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~~~~ 567 (608)
+.++....+...+..-.+-+.....+.+.....-.+.+.-.|++.+|.+++... .+.|...+|.++.
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~ 282 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSS 282 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhh
Confidence 344555555555555555555555566666667788889999999999988765 2445445555444
No 458
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.02 E-value=3.9e+02 Score=25.53 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=30.0
Q ss_pred HHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047146 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318 (608)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 318 (608)
.++..+.+..++....+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444445555544444444442 223334456666778888888887777655
No 459
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.68 E-value=7.9e+02 Score=28.55 Aligned_cols=130 Identities=12% Similarity=0.037 Sum_probs=78.8
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHccCCCCCch-HHHHHHHHHHHhcCChHHHHHHHccCCC--CChhhHHHHHHHHH
Q 047146 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV-FIHNALIDMYLKCGNIPSARKVFDEMPV--KNVVSWNSMIAGLT 301 (608)
Q Consensus 225 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 301 (608)
|..+++.+-+.+-.+.+.++-..+++.-.+..|+. .+++.+.+-....|.+-+|.+.+-+.+. .-..+...++..++
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 66778888888888888888777776543433343 4567777888888888888887766552 22335666777777
Q ss_pred hcCChh------------HHHH-HHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHH-HHHHHHc
Q 047146 302 HRGQFK------------EALD-IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV-HTYLDKN 354 (608)
Q Consensus 302 ~~g~~~------------~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~-~~~~~~~ 354 (608)
..|+++ +... +++..-+....-...-|..+-.-+...+++.+|--+ |++..+.
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 777654 3444 333332222222223455555555677777766543 5544443
No 460
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.51 E-value=7.9e+02 Score=28.53 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=15.2
Q ss_pred HHHHhHhcCCHHHHHHHHhhcC
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMK 387 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~ 387 (608)
+..+|..+|...+|...|.+..
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHh
Confidence 3345777788888888876654
No 461
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.03 E-value=5.2e+02 Score=26.24 Aligned_cols=119 Identities=10% Similarity=0.005 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 047146 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402 (608)
Q Consensus 323 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 402 (608)
++...-..+..++...+.......+...+. ..++.+....+.++...+. +-...+..-+..++...-..-+.++.
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~----~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG 172 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLA----ASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALG 172 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhc----CCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 344445555555555555444444333331 1233333334444443221 11122222233444444444555555
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 047146 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 451 (608)
..+.. ++...+..+.. .+|...-...+.+....|. .+|...+..
T Consensus 173 ~l~~~-~a~~~L~~al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 173 ELPRR-LSESTLRLYLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred hhccc-cchHHHHHHHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 44443 22223333322 3444444444555555555 444443333
No 462
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.67 E-value=4.5e+02 Score=25.44 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=9.1
Q ss_pred HHHHHhccccHHHHHHHHHH
Q 047146 432 VLSACSHAGLVEEGCKHFLD 451 (608)
Q Consensus 432 ll~~~~~~g~~~~a~~~~~~ 451 (608)
...-|++.|+.+.|.+.+.+
T Consensus 110 kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 110 KAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 33344455555544444443
No 463
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.25 E-value=3.9e+02 Score=24.55 Aligned_cols=149 Identities=9% Similarity=0.118 Sum_probs=83.8
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 443 (608)
..-++.|.+.-++.-|...++++.+|=.. ...+--|.+..+..---++.+-....++.-+...+..++ +...|+..
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMR 209 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMR 209 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHH
Confidence 34567777777777777666666654211 112223344444333344444445556666665555544 45678998
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
+|...+..-...+|+-. +..+|+-.+ .|.+.....++..|. .+++++|.+++.+++++
T Consensus 210 QalNnLQst~~g~g~Vn--------------------~enVfKv~d-~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 210 QALNNLQSTVNGFGLVN--------------------QENVFKVCD-EPHPLLVKKMLQACL-KRNIDEALKILAELWKL 267 (333)
T ss_pred HHHHHHHHHhccccccc--------------------hhhhhhccC-CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHc
Confidence 88877776655333211 122333332 566666666766653 45777788888877777
Q ss_pred CCCCCchHHHHHHHH
Q 047146 524 EPEGDGAYILMTNIY 538 (608)
Q Consensus 524 ~p~~~~~~~~l~~~~ 538 (608)
+-+.......+..+.
T Consensus 268 gysp~Dii~~~FRv~ 282 (333)
T KOG0991|consen 268 GYSPEDIITTLFRVV 282 (333)
T ss_pred CCCHHHHHHHHHHHH
Confidence 655544444444443
No 464
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.28 E-value=47 Score=31.94 Aligned_cols=117 Identities=14% Similarity=0.026 Sum_probs=64.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh-hHHHHHHHHHHhcCCHH
Q 047146 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT-EHYGCMVDLFGRAGLIR 479 (608)
Q Consensus 401 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 479 (608)
....|.+++|++.|...++.+ .|....|..-.+++.+++....|++=+..... +.||. .-|-.-..+-.-.|+++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhchH
Confidence 345677778888877777642 33445666666777777777777776666544 45542 23333333444567777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047146 480 EALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521 (608)
Q Consensus 480 ~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 521 (608)
+|...+... .+.-|..+-..+-...-+.+..++-...+++.+
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 777777665 222233322223333334444444444444444
No 465
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.24 E-value=1.8e+02 Score=25.01 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=18.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 047146 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440 (608)
Q Consensus 399 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 440 (608)
..+...++.-.|.++++++.+.+..++..|....|..+...|
T Consensus 33 ~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 33 RLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333333334445555555555444444444433444444443
No 466
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.09 E-value=3e+02 Score=28.68 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCC--CChhhH---HHHHHHHHhcCChhHHHHHHHHHHh
Q 047146 262 HNALIDMYLKCGNIPSARKVFDEMPV--KNVVSW---NSMIAGLTHRGQFKEALDIFRRMQG 318 (608)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~ 318 (608)
...++.-|.+.+++++|..++..|.- .....| +.+...+.+..--++-...++.+.-
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 34677789999999999999998872 122333 3344445555444555555555544
No 467
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.89 E-value=2.4e+02 Score=23.58 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 440 (608)
..++..+.+.+..-.|.++++++.+.+...+..|....+..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344455555555556666666666555555554444445544444
No 468
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=31.71 E-value=1.5e+02 Score=22.05 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=24.2
Q ss_pred hcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChh
Q 047146 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307 (608)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 307 (608)
...+.+++.++++.++.++..+|..+..++-..|...
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 4455666777777777777777777777666666543
No 469
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.57 E-value=2.4e+02 Score=23.60 Aligned_cols=44 Identities=5% Similarity=-0.015 Sum_probs=19.5
Q ss_pred HHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCC
Q 047146 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274 (608)
Q Consensus 229 l~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 274 (608)
+..+...++.-.|.++|+.+.+.+++. +..|--.-++.+...|-
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~i--slaTVYr~L~~l~e~Gl 70 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGI--SLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCC--CHhHHHHHHHHHHHCCC
Confidence 334444444455555555555554444 33332333344444443
No 470
>PHA03100 ankyrin repeat protein; Provisional
Probab=31.40 E-value=6e+02 Score=26.21 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=10.9
Q ss_pred HHHHHHHhcC--CHHHHHHHhcc
Q 047146 157 TLMRLYAVCG--LIKAVHKLFHF 177 (608)
Q Consensus 157 ~li~~~~~~g--~~~~A~~~~~~ 177 (608)
..+...++.| +.+-+..+++.
T Consensus 143 t~L~~A~~~~~~~~~iv~~Ll~~ 165 (480)
T PHA03100 143 NLLHLYLESNKIDLKILKLLIDK 165 (480)
T ss_pred cHHHHHHHcCCChHHHHHHHHHC
Confidence 4444555555 55555555544
No 471
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.28 E-value=5.5e+02 Score=25.73 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHccCCC------CChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047146 260 FIHNALIDMYLKCGNIPSARKVFDEMPV------KNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318 (608)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 318 (608)
..+.-+.+-|..+|+++.|.+.|.+... .-+..|-.+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4566677888999999999999988652 2233566677777777888777777666655
No 472
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.05 E-value=3.4e+02 Score=25.88 Aligned_cols=141 Identities=11% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhc
Q 047146 87 NFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC 165 (608)
Q Consensus 87 ~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 165 (608)
|.+|+.+.+.+..+. +++| +||..+-.+.-+-+...| +.+-.+++..-...| .-...-..|..-..+.
T Consensus 200 ~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~ag-L~elvey~~~q~~~~--a~kElq~~L~~q~s~e 268 (412)
T KOG2297|consen 200 NDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAG-LKELVEYHRNQQSEG--ARKELQKELQEQVSEE 268 (412)
T ss_pred HHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhh-HHHHHHHHHHHHHHH--HHHHHHHHHHHHhccC
Q ss_pred CCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHH
Q 047146 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242 (608)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 242 (608)
..+++......+-.+..--|++..-..+-++......|.+-.++..+-.-+ -..+|..++.+++..|+.+...
T Consensus 269 ~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH----HHHhhhHHHHHHhcCChHHHHH
No 473
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=30.70 E-value=1.2e+02 Score=18.10 Aligned_cols=16 Identities=13% Similarity=-0.197 Sum_probs=7.4
Q ss_pred HHHHHHcCCHHHHHHH
Q 047146 501 LGACKIHAKVELAEIV 516 (608)
Q Consensus 501 ~~~~~~~~~~~~a~~~ 516 (608)
.-.+...|++++|+.+
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3344455555555555
No 474
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=30.63 E-value=5.6e+02 Score=27.40 Aligned_cols=60 Identities=10% Similarity=0.152 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhh
Q 047146 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385 (608)
Q Consensus 324 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 385 (608)
+.....-++..|.+.|-.+.+..+...+-..-.. ..-|..-+..+.++|+...+..+-+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555555666666655555555544322211 12233444555566665555444433
No 475
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.02 E-value=5.8e+02 Score=25.56 Aligned_cols=55 Identities=13% Similarity=-0.071 Sum_probs=30.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChH--HHHHHHHHHh--ccCChHHHHHHHHHHHHc
Q 047146 299 GLTHRGQFKEALDIFRRMQGLGLKPDDF--TLVCVLNSCA--NIGWLELGKWVHTYLDKN 354 (608)
Q Consensus 299 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 354 (608)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++..|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677778888888777765 444444 2333333332 344556666666655443
No 476
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=29.77 E-value=1.2e+02 Score=30.81 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=20.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccccHHHHHHHHHHhH
Q 047146 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGV-LSACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~ 453 (608)
.+.++.|+.++.+..+ +.||...|-.. ..++.+.+++..|..=...+.
T Consensus 17 ~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred cchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhh
Confidence 3444555555555544 34443322211 234444455555444333333
No 477
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.46 E-value=1.1e+02 Score=30.53 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=15.0
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
.+|..++-+|.-.+++.+|.+.|...
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666555555
No 478
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=29.44 E-value=1.4e+02 Score=21.29 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=17.9
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC
Q 047146 477 LIREALDLIKSM--PLVPDAFVWGALLGACKIHA 508 (608)
Q Consensus 477 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~ 508 (608)
+.+.|..++... ..+..+..|+++.....+++
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 445566666655 33445666666666555443
No 479
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=29.19 E-value=2.8e+02 Score=21.67 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=11.1
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 047146 296 MIAGLTHRGQFKEALDIFRRM 316 (608)
Q Consensus 296 li~~~~~~g~~~~A~~~~~~m 316 (608)
++..|...+++++|...+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 444455555555555555554
No 480
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=29.03 E-value=4.6e+02 Score=26.44 Aligned_cols=85 Identities=16% Similarity=0.066 Sum_probs=57.0
Q ss_pred hCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH--------hHhcCCHHHHHHHHhhcCC-
Q 047146 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM--------YAKCGRIDQAFGVFRSMKC- 388 (608)
Q Consensus 318 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~- 388 (608)
...+.||..+.+.+.+.++..-..+....+|+...+.+-+.-+. +.+||-. -.+...-++++++++.|+.
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vf-fLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVF-FLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehH-HHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 34578888888888888887778888888888777766333222 2222211 1244567889999999884
Q ss_pred ---CChhHHHHHHHHHHH
Q 047146 389 ---RDVYSYTAMIVGLAI 403 (608)
Q Consensus 389 ---~~~~~~~~li~~~~~ 403 (608)
.|+.-+-.|.+.|+.
T Consensus 255 L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred cccccchhHHHHHHHHhh
Confidence 466667777776653
No 481
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=28.96 E-value=2e+02 Score=27.35 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=35.6
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP 492 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 492 (608)
..+.|+.++|..+|+.+.. +.|+ +.....+........++-+|-.++-+. .+.|
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 4577999999999999876 4554 444444444444455666676666555 5555
No 482
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=28.69 E-value=5.1e+02 Score=24.53 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=24.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChHHH
Q 047146 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328 (608)
Q Consensus 296 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 328 (608)
+.+-..+.+++++|+..+.+....|+..|..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 344456778888888888888888877666554
No 483
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.67 E-value=1.4e+02 Score=23.37 Aligned_cols=21 Identities=14% Similarity=0.423 Sum_probs=9.9
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 047146 296 MIAGLTHRGQFKEALDIFRRM 316 (608)
Q Consensus 296 li~~~~~~g~~~~A~~~~~~m 316 (608)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444555555555555443
No 484
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.65 E-value=6.9e+02 Score=29.25 Aligned_cols=121 Identities=14% Similarity=0.130 Sum_probs=83.4
Q ss_pred HHHhccccHHHHHH------HHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--------CC-CC-CHHH
Q 047146 434 SACSHAGLVEEGCK------HFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM--------PL-VP-DAFV 496 (608)
Q Consensus 434 ~~~~~~g~~~~a~~------~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~-~p-~~~~ 496 (608)
..+...|.+.+|.+ ++..... -..| ....|..|...+.+.|+.++|+..-... +. .| +...
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~--~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMG--VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhh--hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 34555566776666 4443322 1233 4678899999999999999999886654 22 23 3445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-----C---CCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 497 WGALLGACKIHAKVELAEIVMENLVRF-----E---PEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 497 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
|..+...+...++...|...+..+..+ + |+.......+..++...++.+.|.++++...+
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666666666677888888888877754 2 34444556677777778999999999999976
No 485
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.47 E-value=1.5e+02 Score=29.83 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCC-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047146 262 HNALIDMYLKCGNIPSARKVFDEMP-----------VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317 (608)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 317 (608)
...|++.++-.||+..|+++++.+. .-.+.++--+.-+|...+++.+|++.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666554 2244566667777888888888888887764
No 486
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=27.87 E-value=1.4e+02 Score=18.15 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=22.8
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.+|..|+.+-...+++++|..=+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888998999999998888887753
No 487
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=27.67 E-value=1.5e+02 Score=21.48 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=36.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
-..+|-.++|..++.-+-.+-|+...-..+-+-+|.-.|+..+|.+.+..+
T Consensus 16 avNH~L~~ea~ailnalP~li~D~~~r~vcea~llfGL~~~~~A~~~L~~~ 66 (79)
T TIGR02498 16 AVNHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLENM 66 (79)
T ss_pred HHccCcHHHHHHHHHhcccccCCHhHHHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 356777777777777777777776666667777777777777777777654
No 488
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.13 E-value=3.3e+02 Score=29.10 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=43.5
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChH------HHHHHHccCC-CCChhhHHHHHHH
Q 047146 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP------SARKVFDEMP-VKNVVSWNSMIAG 299 (608)
Q Consensus 227 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~~~-~~~~~~~~~li~~ 299 (608)
+++.+|...|++..+.++++......-+.+-=...+|..|+-..+.|.++ .|.+.++... .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 77888888888888888888777654332223445666666666777643 2233333222 3345555555544
Q ss_pred H
Q 047146 300 L 300 (608)
Q Consensus 300 ~ 300 (608)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 489
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.84 E-value=2.8e+02 Score=27.04 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 477 LIREALDLIKSM-PLVPDA----FVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 477 ~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
-.+++...++.+ ..-|+. ..|-++.......|.++..+.+|++++..+...
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqP 173 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQP 173 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCh
Confidence 455777777765 333443 477777788888888888888888888776553
No 490
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.82 E-value=2.3e+02 Score=21.77 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=22.8
Q ss_pred HHHHHHHhc-CCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 515 IVMENLVRF-EPEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 515 ~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
+.++++... .+-.|....+|+-+|++.|+-+.|.+-|+.
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 344444433 244445566777777777777776666654
No 491
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.73 E-value=2.2e+02 Score=26.37 Aligned_cols=19 Identities=21% Similarity=0.078 Sum_probs=8.7
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 047146 399 VGLAIHGKAWKALDIFSEM 417 (608)
Q Consensus 399 ~~~~~~~~~~~A~~~~~~m 417 (608)
.-|...|++++|.++|+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444
No 492
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.71 E-value=1.8e+02 Score=22.96 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=26.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCC
Q 047146 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237 (608)
Q Consensus 193 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 237 (608)
++..+...+..-.|.++++.+.+.+..++..|..-.|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444455555666666666666655566665555555555554
No 493
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=26.26 E-value=2.8e+02 Score=20.73 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhc
Q 047146 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386 (608)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 386 (608)
++|+.....|+..|+.+|..+++...-+=-++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45555555666666666666666555544555555555544
No 494
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.98 E-value=2.8e+02 Score=23.89 Aligned_cols=23 Identities=9% Similarity=-0.200 Sum_probs=9.4
Q ss_pred CchHHHHHHHHHHHCCCCCCHhH
Q 047146 202 YPTEAILSFFDMCQANLRPDGMI 224 (608)
Q Consensus 202 ~~~~a~~~~~~m~~~~~~p~~~t 224 (608)
..-.|.++++.+.+.+..++..|
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcch
Confidence 33344444444444433333333
No 495
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=25.83 E-value=3.8e+02 Score=27.75 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=11.7
Q ss_pred hhhccCChhHHHHHHHHHHHhC
Q 047146 30 RLESSKSVGQLKQFHAFIIKTG 51 (608)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~g 51 (608)
++...+.++.....|+-.+.+|
T Consensus 89 il~k~~rVE~sv~AH~~A~~~g 110 (737)
T KOG1524|consen 89 ILNKSARVERSISAHAAAISSG 110 (737)
T ss_pred Eecccchhhhhhhhhhhhhhhc
Confidence 3444445555555666555554
No 496
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=25.74 E-value=9.5e+02 Score=26.66 Aligned_cols=129 Identities=9% Similarity=0.047 Sum_probs=68.3
Q ss_pred CCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHcc-------CCCCC
Q 047146 217 NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE-------MPVKN 289 (608)
Q Consensus 217 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~~~ 289 (608)
++..+......++..+ .|+...+..+++.+.........+... =..+.+.+.+.+ -....
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It~~~~~e~l~~~~~~ydk~gd~h 258 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------ITLAIAEESIQQRAVLYDKEGDAH 258 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------ccHHHHHHHHHHhhhhcccCCCCC
Confidence 4555666666666544 688888888887765421110000100 011122222222 11112
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC-----hHHHHHHHHHHHHcCCCCc
Q 047146 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW-----LELGKWVHTYLDKNHINTD 359 (608)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 359 (608)
...-++++++ ++.++++.|+..+.+|.+.|..|....-..++.+.-..|. ...+...+......|++-.
T Consensus 259 yd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~ 332 (725)
T PRK13341 259 FDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEG 332 (725)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcch
Confidence 2222333333 3568899999999999999988877766666666655553 2233334444455565443
No 497
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.50 E-value=2.9e+02 Score=20.55 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=28.0
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 047146 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 410 (608)
...+.+.|.++++.++.+...+|.....++...|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 445677788888888888888888887777776655433
No 498
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=25.43 E-value=5.9e+02 Score=24.15 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=29.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhH-------HHHHHHHhhccCCchH
Q 047146 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMI-------LVIVLSACSKLGDLSL 240 (608)
Q Consensus 193 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t-------~~~ll~~~~~~~~~~~ 240 (608)
+.+-.++.+++++|+..+.+....|+..|..+ ...+.+.|.+.|+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 44556677788888888888887777665543 3344445555555443
No 499
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.37 E-value=4.3e+02 Score=24.46 Aligned_cols=22 Identities=5% Similarity=-0.109 Sum_probs=10.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHH
Q 047146 531 YILMTNIYSSKNRWKEALKLRK 552 (608)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~ 552 (608)
...+..++.+.|+.++.+.+.=
T Consensus 221 l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 221 LWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 3344445555555555554433
No 500
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=25.32 E-value=9.5e+02 Score=27.15 Aligned_cols=197 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 047146 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA 216 (608)
Q Consensus 137 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 216 (608)
.+-+..+.+..........+.++....+.++.+...-+.+. ...........-+...+..|+.+ +++.+.+.
T Consensus 476 ~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l~v~~ll~~~----~~~~~~~~~~~~L~~Aa~~g~~~----~l~~Ll~~ 547 (823)
T PLN03192 476 TSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDN----GGEHDDPNMASNLLTVASTGNAA----LLEELLKA 547 (823)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhccccHHHHHhhc----ccccCCccchhHHHHHHHcCCHH----HHHHHHHC
Q ss_pred CCCCCHhHHH--HHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHH
Q 047146 217 NLRPDGMILV--IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWN 294 (608)
Q Consensus 217 ~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 294 (608)
|..||..... +.+...+..|..+ +.+.+++.|.+......--++-+...+..|+.+-+.-+++.-...+...-.
T Consensus 548 G~d~n~~d~~G~TpLh~Aa~~g~~~----~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~ 623 (823)
T PLN03192 548 KLDPDIGDSKGRTPLHIAASKGYED----CVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAG 623 (823)
T ss_pred CCCCCCCCCCCCCHHHHHHHcChHH----HHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCc
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH--HHHHHHhccCChHHHHHHHH
Q 047146 295 SMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV--CVLNSCANIGWLELGKWVHT 349 (608)
Q Consensus 295 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~ 349 (608)
..+...+..|+.+ +.+.+.+.|..+|..... +.+...+..|+.+.+..+++
T Consensus 624 ~~L~~Aa~~g~~~----~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 676 (823)
T PLN03192 624 DLLCTAAKRNDLT----AMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676 (823)
T ss_pred hHHHHHHHhCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Done!