Query 047146
Match_columns 608
No_of_seqs 663 out of 3872
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 14:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-42 6.1E-47 370.1 36.9 523 36-598 35-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-37 4.2E-42 332.6 28.6 477 54-540 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.2E-26 1.1E-30 230.4 42.4 348 196-556 8-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-26 4.6E-31 233.1 39.3 374 126-543 8-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-27 3.8E-32 245.1 22.8 182 292-474 28-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.2E-27 3.9E-32 245.0 18.2 187 84-272 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 9.4E-23 3.2E-27 213.0 32.0 396 152-558 6-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 9.6E-22 3.3E-26 201.7 33.8 337 185-554 24-406 (450)
9 2gw1_A Mitochondrial precursor 99.9 4.9E-22 1.7E-26 207.6 31.4 442 85-534 8-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 8.2E-22 2.8E-26 207.2 32.2 424 120-558 28-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 2.3E-21 7.8E-26 198.9 33.7 305 221-557 25-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 4.3E-20 1.5E-24 194.0 30.9 431 83-532 25-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 5.6E-19 1.9E-23 174.9 35.1 325 221-603 2-355 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 3.3E-18 1.1E-22 169.4 33.3 325 186-540 2-352 (359)
15 3hym_B Cell division cycle pro 99.8 9.6E-18 3.3E-22 164.0 28.6 184 361-545 126-322 (330)
16 2ooe_A Cleavage stimulation fa 99.8 4.5E-16 1.5E-20 162.8 41.4 413 116-558 12-493 (530)
17 3hym_B Cell division cycle pro 99.8 3.4E-17 1.2E-21 160.0 30.9 279 289-598 21-314 (330)
18 1b89_A Protein (clathrin heavy 99.8 1E-17 3.4E-22 163.3 22.7 355 163-559 14-387 (449)
19 2xm6_A Protein corresponding t 99.8 5E-16 1.7E-20 160.8 36.9 366 151-540 38-452 (490)
20 1xi4_A Clathrin heavy chain; a 99.8 1.8E-15 6.2E-20 164.0 41.5 417 79-551 949-1378(1630)
21 1fch_A Peroxisomal targeting s 99.8 1.6E-17 5.4E-22 165.3 23.7 278 271-554 37-356 (368)
22 1xi4_A Clathrin heavy chain; a 99.8 1.1E-14 3.7E-19 158.1 45.8 351 153-552 986-1340(1630)
23 3mkr_A Coatomer subunit epsilo 99.8 7.1E-17 2.4E-21 154.2 25.6 268 270-551 10-288 (291)
24 2xm6_A Protein corresponding t 99.8 7.5E-15 2.6E-19 151.9 41.3 352 185-559 37-434 (490)
25 1b89_A Protein (clathrin heavy 99.8 7.2E-17 2.5E-21 157.4 23.2 279 66-382 14-304 (449)
26 2ooe_A Cleavage stimulation fa 99.8 4.3E-15 1.5E-19 155.4 38.1 412 79-526 9-495 (530)
27 4eqf_A PEX5-related protein; a 99.8 5.1E-17 1.8E-21 161.5 21.6 261 289-553 64-352 (365)
28 4g1t_A Interferon-induced prot 99.8 1.1E-15 3.6E-20 157.7 31.9 388 152-568 51-470 (472)
29 1fch_A Peroxisomal targeting s 99.7 1.6E-16 5.5E-21 158.0 23.4 222 225-453 67-312 (368)
30 3mkr_A Coatomer subunit epsilo 99.7 6.5E-16 2.2E-20 147.5 23.6 245 297-556 6-263 (291)
31 3cv0_A Peroxisome targeting si 99.7 3.5E-16 1.2E-20 152.6 21.7 258 293-555 24-313 (327)
32 4eqf_A PEX5-related protein; a 99.7 4.9E-16 1.7E-20 154.3 21.1 274 184-488 62-353 (365)
33 3spa_A Mtrpol, DNA-directed RN 99.7 2.5E-17 8.7E-22 173.0 7.7 149 118-273 128-286 (1134)
34 4g1t_A Interferon-induced prot 99.7 6E-15 2.1E-19 152.0 25.0 385 116-535 50-471 (472)
35 3cv0_A Peroxisome targeting si 99.7 1E-14 3.5E-19 142.1 25.1 95 186-284 20-114 (327)
36 3uq3_A Heat shock protein STI1 99.6 3.6E-14 1.2E-18 133.0 22.5 219 292-558 7-237 (258)
37 3spa_A Mtrpol, DNA-directed RN 99.6 3.3E-16 1.1E-20 164.7 9.2 127 357-484 124-258 (1134)
38 2pl2_A Hypothetical conserved 99.6 1.9E-14 6.4E-19 131.2 19.4 194 357-555 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.6 4.8E-14 1.6E-18 132.1 19.7 237 258-536 4-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-13 5E-18 130.3 21.0 241 302-551 17-269 (275)
41 3u4t_A TPR repeat-containing p 99.6 2.7E-13 9.1E-18 128.3 21.5 176 363-542 77-269 (272)
42 3e4b_A ALGK; tetratricopeptide 99.5 4.6E-12 1.6E-16 129.0 27.9 378 123-556 9-420 (452)
43 2vq2_A PILW, putative fimbrial 99.5 1.9E-12 6.5E-17 118.3 22.5 197 359-557 7-211 (225)
44 2ho1_A Type 4 fimbrial biogene 99.5 1.4E-12 4.6E-17 121.9 21.8 197 360-558 37-239 (252)
45 2q7f_A YRRB protein; TPR, prot 99.5 2.6E-13 9E-18 125.9 16.6 197 359-558 22-223 (243)
46 3u4t_A TPR repeat-containing p 99.5 1E-12 3.6E-17 124.2 20.5 218 335-558 13-251 (272)
47 3e4b_A ALGK; tetratricopeptide 99.5 1.3E-12 4.5E-17 133.0 21.9 345 192-560 8-390 (452)
48 1ouv_A Conserved hypothetical 99.5 1.1E-11 3.9E-16 117.2 26.6 224 289-559 5-253 (273)
49 2ho1_A Type 4 fimbrial biogene 99.5 5.8E-12 2E-16 117.6 24.2 204 290-531 37-246 (252)
50 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.4E-12 8.3E-17 121.8 21.7 239 200-449 18-269 (275)
51 2pl2_A Hypothetical conserved 99.5 2.6E-12 9E-17 116.8 20.6 191 292-488 7-211 (217)
52 3vtx_A MAMA; tetratricopeptide 99.5 1.8E-12 6.3E-17 114.5 18.9 166 390-559 4-172 (184)
53 2q7f_A YRRB protein; TPR, prot 99.5 8E-13 2.7E-17 122.6 17.0 213 290-541 23-240 (243)
54 1ouv_A Conserved hypothetical 99.5 1.9E-11 6.6E-16 115.6 26.6 226 258-528 5-256 (273)
55 2vq2_A PILW, putative fimbrial 99.5 1E-11 3.4E-16 113.5 23.5 207 290-534 8-222 (225)
56 4e6h_A MRNA 3'-END-processing 99.5 2.7E-10 9.3E-15 119.9 37.1 428 102-538 52-584 (679)
57 2h6f_A Protein farnesyltransfe 99.5 3.6E-12 1.2E-16 125.8 21.5 243 291-540 98-365 (382)
58 4a1s_A PINS, partner of inscut 99.5 7.5E-13 2.6E-17 133.5 17.1 196 361-556 127-371 (411)
59 2h6f_A Protein farnesyltransfe 99.5 2.7E-12 9.2E-17 126.7 20.3 224 326-556 98-347 (382)
60 3sf4_A G-protein-signaling mod 99.5 1.8E-12 6.3E-17 130.3 19.6 270 258-527 8-340 (406)
61 3ro2_A PINS homolog, G-protein 99.5 3.8E-12 1.3E-16 124.1 20.5 261 296-557 11-332 (338)
62 4abn_A Tetratricopeptide repea 99.4 1.6E-12 5.3E-17 133.3 16.2 192 359-554 101-318 (474)
63 3sf4_A G-protein-signaling mod 99.4 2.4E-12 8.1E-17 129.5 17.2 198 291-488 88-333 (406)
64 4e6h_A MRNA 3'-END-processing 99.4 1.2E-09 4.3E-14 114.9 34.4 421 135-560 50-573 (679)
65 3ulq_A Response regulator aspa 99.4 3.6E-11 1.2E-15 120.0 20.8 158 296-453 109-291 (383)
66 4a1s_A PINS, partner of inscut 99.4 9.6E-12 3.3E-16 125.4 16.4 134 393-526 225-375 (411)
67 3vtx_A MAMA; tetratricopeptide 99.4 2.5E-11 8.7E-16 107.1 16.9 166 359-528 4-175 (184)
68 3ro2_A PINS homolog, G-protein 99.3 1.6E-11 5.4E-16 119.7 16.4 134 393-526 185-335 (338)
69 3ulq_A Response regulator aspa 99.3 2.1E-11 7E-16 121.7 17.3 225 331-556 109-367 (383)
70 4gyw_A UDP-N-acetylglucosamine 99.3 1.8E-11 6E-16 130.6 17.3 161 391-556 9-173 (723)
71 4i17_A Hypothetical protein; T 99.3 3.1E-11 1.1E-15 110.7 16.8 204 359-600 6-226 (228)
72 2ond_A Cleavage stimulation fa 99.3 7E-10 2.4E-14 106.8 26.8 218 307-528 33-275 (308)
73 3nf1_A KLC 1, kinesin light ch 99.3 2.8E-12 9.7E-17 123.7 9.1 236 290-556 27-306 (311)
74 2ond_A Cleavage stimulation fa 99.3 2.4E-10 8.1E-15 110.1 22.3 214 342-560 33-273 (308)
75 4abn_A Tetratricopeptide repea 99.3 4.5E-11 1.5E-15 122.5 17.8 178 375-557 83-287 (474)
76 3as5_A MAMA; tetratricopeptide 99.3 5.7E-11 2E-15 104.6 16.2 161 395-558 12-174 (186)
77 1hz4_A MALT regulatory protein 99.3 2.8E-09 9.7E-14 105.7 29.0 193 364-556 97-321 (373)
78 3nf1_A KLC 1, kinesin light ch 99.3 1.4E-11 4.7E-16 118.8 11.5 238 258-526 26-310 (311)
79 4i17_A Hypothetical protein; T 99.3 4E-10 1.4E-14 103.2 19.2 204 323-538 5-224 (228)
80 3q15_A PSP28, response regulat 99.2 2.3E-10 7.7E-15 113.9 18.6 193 363-556 144-364 (378)
81 3as5_A MAMA; tetratricopeptide 99.2 9.7E-10 3.3E-14 96.6 19.6 166 361-529 9-179 (186)
82 3q15_A PSP28, response regulat 99.2 2.2E-09 7.5E-14 106.7 23.0 226 297-523 108-365 (378)
83 1hz4_A MALT regulatory protein 99.1 3.5E-08 1.2E-12 97.7 28.1 258 196-454 23-321 (373)
84 3edt_B KLC 2, kinesin light ch 99.1 8.5E-10 2.9E-14 104.4 15.1 221 336-556 12-280 (283)
85 3mv2_B Coatomer subunit epsilo 99.1 1.9E-08 6.4E-13 94.1 22.4 238 269-528 23-287 (310)
86 3qky_A Outer membrane assembly 99.1 9.6E-09 3.3E-13 96.1 20.2 204 359-603 14-247 (261)
87 4gyw_A UDP-N-acetylglucosamine 99.1 8.2E-10 2.8E-14 117.8 14.0 162 359-525 8-176 (723)
88 4ga2_A E3 SUMO-protein ligase 99.1 2.8E-10 9.7E-15 96.4 7.9 120 433-555 4-127 (150)
89 1qqe_A Vesicular transport pro 99.0 4.1E-09 1.4E-13 100.5 16.2 216 274-528 32-274 (292)
90 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.5E-08 5.2E-13 92.4 19.2 181 361-561 5-217 (225)
91 2fo7_A Synthetic consensus TPR 99.0 6.7E-09 2.3E-13 85.6 14.8 125 431-557 6-132 (136)
92 1qqe_A Vesicular transport pro 99.0 2.9E-09 9.8E-14 101.6 13.9 201 340-555 32-267 (292)
93 3mv2_B Coatomer subunit epsilo 99.0 3.6E-08 1.2E-12 92.2 20.8 162 392-558 101-283 (310)
94 3qky_A Outer membrane assembly 99.0 1.1E-08 3.9E-13 95.6 16.2 202 323-545 13-249 (261)
95 4ga2_A E3 SUMO-protein ligase 99.0 7.1E-10 2.4E-14 93.9 7.1 139 400-543 6-149 (150)
96 3edt_B KLC 2, kinesin light ch 99.0 1.5E-08 5.3E-13 95.6 17.2 164 360-523 85-281 (283)
97 3qou_A Protein YBBN; thioredox 99.0 1.3E-08 4.4E-13 96.7 15.6 175 376-555 102-282 (287)
98 2fo7_A Synthetic consensus TPR 98.9 3.2E-08 1.1E-12 81.4 16.1 132 393-527 3-136 (136)
99 2pzi_A Probable serine/threoni 98.9 3.5E-09 1.2E-13 113.5 12.6 164 336-506 402-580 (681)
100 3gyz_A Chaperone protein IPGC; 98.9 7.3E-09 2.5E-13 87.2 11.2 102 457-558 30-134 (151)
101 4gco_A Protein STI-1; structur 98.9 1.4E-08 4.9E-13 82.8 11.5 94 463-556 14-109 (126)
102 2r5s_A Uncharacterized protein 98.9 9.8E-09 3.4E-13 89.6 11.2 155 397-556 12-172 (176)
103 2vsy_A XCC0866; transferase, g 98.9 2.7E-08 9.4E-13 104.6 15.8 159 373-535 2-169 (568)
104 2uy1_A Cleavage stimulation fa 98.8 5.1E-06 1.7E-10 84.9 31.5 203 307-522 196-412 (493)
105 3rjv_A Putative SEL1 repeat pr 98.8 3E-07 1E-11 82.7 19.7 162 389-559 16-199 (212)
106 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.2E-07 7.4E-12 84.6 17.0 185 324-529 3-219 (225)
107 2ifu_A Gamma-SNAP; membrane fu 98.8 1.2E-07 4.1E-12 91.0 15.8 220 303-550 4-254 (307)
108 3qou_A Protein YBBN; thioredox 98.8 1.2E-07 4E-12 90.0 15.3 131 425-558 116-249 (287)
109 3urz_A Uncharacterized protein 98.8 1E-07 3.5E-12 85.6 14.1 158 364-527 8-190 (208)
110 2pzi_A Probable serine/threoni 98.8 2.1E-07 7.3E-12 99.6 19.0 166 301-474 402-580 (681)
111 2vgx_A Chaperone SYCD; alterna 98.8 2.7E-08 9.4E-13 83.8 9.6 100 458-557 16-118 (148)
112 4gco_A Protein STI-1; structur 98.8 5.1E-08 1.7E-12 79.5 10.9 114 422-537 8-124 (126)
113 3urz_A Uncharacterized protein 98.8 9.5E-08 3.2E-12 85.8 13.7 154 398-557 11-186 (208)
114 2vsy_A XCC0866; transferase, g 98.8 1.2E-07 3.9E-12 99.8 16.4 145 339-488 3-154 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 6.8E-08 2.3E-12 92.7 13.4 197 337-555 3-222 (307)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.3E-07 8E-12 83.5 15.9 131 392-528 7-155 (213)
117 3u3w_A Transcriptional activat 98.7 2.5E-06 8.5E-11 81.1 22.2 161 396-556 80-265 (293)
118 3dra_A Protein farnesyltransfe 98.7 2.5E-06 8.6E-11 80.6 21.6 224 302-531 44-296 (306)
119 2qfc_A PLCR protein; TPR, HTH, 98.7 7E-07 2.4E-11 84.9 17.9 163 393-555 77-264 (293)
120 2r5s_A Uncharacterized protein 98.7 2.2E-07 7.7E-12 80.8 13.2 154 364-522 10-172 (176)
121 2uy1_A Cleavage stimulation fa 98.7 3E-06 1E-10 86.6 23.2 374 130-556 7-412 (493)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.2E-06 4E-11 78.8 17.6 130 364-494 10-154 (213)
123 3upv_A Heat shock protein STI1 98.6 1.9E-07 6.4E-12 76.1 10.9 119 462-600 4-124 (126)
124 2xcb_A PCRH, regulatory protei 98.6 3E-07 1E-11 76.7 12.1 97 461-557 17-115 (142)
125 1a17_A Serine/threonine protei 98.6 5.1E-07 1.7E-11 77.4 13.8 126 428-555 15-144 (166)
126 1na0_A Designed protein CTPR3; 98.6 7.6E-07 2.6E-11 71.8 13.1 114 427-542 10-125 (125)
127 1p5q_A FKBP52, FK506-binding p 98.6 2.8E-07 9.6E-12 89.5 12.1 94 462-555 196-292 (336)
128 2e2e_A Formate-dependent nitri 98.6 1.4E-07 4.6E-12 82.3 8.6 116 439-556 23-143 (177)
129 2vyi_A SGTA protein; chaperone 98.6 7.2E-07 2.5E-11 72.7 12.3 116 427-544 13-130 (131)
130 2lni_A Stress-induced-phosphop 98.6 7.3E-07 2.5E-11 73.0 12.3 112 428-541 18-131 (133)
131 2c2l_A CHIP, carboxy terminus 98.6 1.4E-07 4.7E-12 89.1 8.7 188 360-557 4-199 (281)
132 2lni_A Stress-induced-phosphop 98.5 7.8E-07 2.7E-11 72.8 12.1 95 462-556 16-112 (133)
133 3dra_A Protein farnesyltransfe 98.5 5.9E-05 2E-09 71.2 26.3 211 341-556 49-286 (306)
134 1elw_A TPR1-domain of HOP; HOP 98.5 1.9E-06 6.5E-11 68.6 13.4 94 463-556 5-100 (118)
135 1hxi_A PEX5, peroxisome target 98.5 3.2E-07 1.1E-11 74.0 8.7 96 464-559 19-116 (121)
136 2kck_A TPR repeat; tetratricop 98.5 7.4E-07 2.5E-11 70.3 10.5 100 461-560 5-109 (112)
137 3u3w_A Transcriptional activat 98.5 1.9E-05 6.3E-10 75.0 22.2 158 366-523 81-266 (293)
138 3gyz_A Chaperone protein IPGC; 98.5 5.9E-07 2E-11 75.4 10.2 98 428-528 38-138 (151)
139 1na0_A Designed protein CTPR3; 98.5 1.9E-06 6.6E-11 69.4 13.1 96 462-557 9-106 (125)
140 3rjv_A Putative SEL1 repeat pr 98.5 8.5E-06 2.9E-10 73.1 18.4 154 292-454 20-196 (212)
141 2vgx_A Chaperone SYCD; alterna 98.5 2.6E-07 9.1E-12 77.6 7.9 113 414-530 10-125 (148)
142 2vyi_A SGTA protein; chaperone 98.5 2E-06 6.9E-11 69.9 13.1 117 461-603 11-129 (131)
143 4f3v_A ESX-1 secretion system 98.5 7.3E-07 2.5E-11 82.2 10.8 183 372-559 18-239 (282)
144 2qfc_A PLCR protein; TPR, HTH, 98.5 4.5E-06 1.5E-10 79.3 16.3 160 364-523 79-266 (293)
145 2dba_A Smooth muscle cell asso 98.4 2.8E-06 9.6E-11 71.0 13.2 94 462-555 28-126 (148)
146 3q49_B STIP1 homology and U bo 98.4 1.6E-06 5.6E-11 71.5 11.4 98 461-558 8-107 (137)
147 3sz7_A HSC70 cochaperone (SGT) 98.4 1.1E-06 3.8E-11 75.3 10.7 109 425-535 10-120 (164)
148 4gcn_A Protein STI-1; structur 98.4 7.9E-07 2.7E-11 72.4 9.2 94 463-556 9-111 (127)
149 3gw4_A Uncharacterized protein 98.4 5.3E-06 1.8E-10 73.6 15.4 92 464-555 68-174 (203)
150 3gw4_A Uncharacterized protein 98.4 1.9E-06 6.5E-11 76.6 11.8 152 372-523 4-176 (203)
151 2fbn_A 70 kDa peptidylprolyl i 98.4 1.6E-06 5.5E-11 76.9 11.2 169 369-558 13-187 (198)
152 2xcb_A PCRH, regulatory protei 98.4 1.3E-06 4.5E-11 72.7 9.8 105 428-534 20-126 (142)
153 3rkv_A Putative peptidylprolyl 98.4 1.4E-06 4.9E-11 74.4 10.2 63 494-556 63-125 (162)
154 2e2e_A Formate-dependent nitri 98.4 1.9E-06 6.6E-11 74.8 11.2 127 402-531 21-152 (177)
155 4f3v_A ESX-1 secretion system 98.4 4.6E-06 1.6E-10 76.9 13.7 136 395-535 106-248 (282)
156 3upv_A Heat shock protein STI1 98.4 2.6E-06 9E-11 69.1 10.9 109 428-538 6-122 (126)
157 1elw_A TPR1-domain of HOP; HOP 98.4 5.4E-06 1.8E-10 65.9 12.6 109 428-538 6-116 (118)
158 3sz7_A HSC70 cochaperone (SGT) 98.4 4.1E-06 1.4E-10 71.6 12.1 94 391-488 11-105 (164)
159 2dba_A Smooth muscle cell asso 98.3 7.2E-06 2.5E-10 68.4 13.1 112 426-540 28-145 (148)
160 1a17_A Serine/threonine protei 98.3 9.7E-06 3.3E-10 69.2 14.1 129 392-523 14-146 (166)
161 2fbn_A 70 kDa peptidylprolyl i 98.3 8.6E-07 3E-11 78.7 7.5 115 462-602 38-170 (198)
162 1p5q_A FKBP52, FK506-binding p 98.3 3.6E-06 1.2E-10 81.6 11.5 115 462-602 147-278 (336)
163 1elr_A TPR2A-domain of HOP; HO 98.3 6.7E-06 2.3E-10 66.8 11.5 95 462-556 4-107 (131)
164 3q7a_A Farnesyltransferase alp 98.3 8.5E-05 2.9E-09 70.9 20.1 219 300-556 64-330 (349)
165 3q49_B STIP1 homology and U bo 98.3 5.6E-06 1.9E-10 68.2 10.4 100 425-526 8-109 (137)
166 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 6.9E-06 2.3E-10 83.3 13.0 144 391-556 268-414 (457)
167 1wao_1 Serine/threonine protei 98.2 2.5E-06 8.5E-11 87.0 9.5 118 433-553 13-135 (477)
168 2hr2_A Hypothetical protein; a 98.2 4.9E-06 1.7E-10 69.2 9.4 61 496-556 59-130 (159)
169 2xev_A YBGF; tetratricopeptide 98.2 4.5E-06 1.5E-10 67.9 9.2 89 468-556 8-104 (129)
170 4b4t_Q 26S proteasome regulato 98.2 2.5E-05 8.5E-10 78.7 15.8 164 393-556 57-244 (434)
171 3q7a_A Farnesyltransferase alp 98.2 0.00098 3.3E-08 63.6 25.0 237 262-536 57-345 (349)
172 3k9i_A BH0479 protein; putativ 98.1 2.1E-06 7.2E-11 68.7 5.1 61 495-555 28-88 (117)
173 2if4_A ATFKBP42; FKBP-like, al 98.1 3.9E-06 1.3E-10 81.4 7.9 150 391-560 179-331 (338)
174 2kck_A TPR repeat; tetratricop 98.1 1.2E-05 4.2E-10 63.1 9.5 99 428-528 8-111 (112)
175 1elr_A TPR2A-domain of HOP; HO 98.1 7.9E-06 2.7E-10 66.3 8.6 105 431-538 9-122 (131)
176 3dss_A Geranylgeranyl transfer 98.1 0.0008 2.7E-08 63.9 23.1 190 342-537 91-318 (331)
177 1hxi_A PEX5, peroxisome target 98.1 1E-05 3.6E-10 65.0 8.9 97 430-528 21-119 (121)
178 3ro3_A PINS homolog, G-protein 98.1 2.1E-05 7.3E-10 66.5 11.3 93 464-556 51-157 (164)
179 2c2l_A CHIP, carboxy terminus 98.1 1.6E-05 5.3E-10 74.9 11.2 111 425-538 3-116 (281)
180 2xev_A YBGF; tetratricopeptide 98.1 4.1E-05 1.4E-09 62.1 12.2 101 432-534 8-116 (129)
181 1ihg_A Cyclophilin 40; ppiase 98.1 1.8E-05 6.3E-10 77.5 11.5 137 392-550 224-363 (370)
182 4gcn_A Protein STI-1; structur 98.1 3.7E-05 1.3E-09 62.3 11.4 60 393-454 10-70 (127)
183 3dss_A Geranylgeranyl transfer 98.1 0.00067 2.3E-08 64.4 21.4 179 376-558 90-305 (331)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.9E-05 6.6E-10 80.0 11.6 64 494-557 317-380 (457)
185 1ihg_A Cyclophilin 40; ppiase 98.0 2.1E-05 7.1E-10 77.2 11.2 131 427-602 224-355 (370)
186 3rkv_A Putative peptidylprolyl 98.0 1.2E-05 3.9E-10 68.6 7.8 77 462-538 63-142 (162)
187 3k9i_A BH0479 protein; putativ 98.0 5E-06 1.7E-10 66.5 4.9 92 439-531 3-98 (117)
188 2hr2_A Hypothetical protein; a 98.0 1.4E-05 4.7E-10 66.4 7.5 71 464-534 59-142 (159)
189 3ro3_A PINS homolog, G-protein 98.0 4.1E-05 1.4E-09 64.6 10.4 132 393-524 11-159 (164)
190 1dce_A Protein (RAB geranylger 98.0 0.00036 1.2E-08 72.3 19.1 169 374-546 43-244 (567)
191 2l6j_A TPR repeat-containing p 97.9 2.5E-06 8.6E-11 67.3 2.0 93 461-553 3-103 (111)
192 2if4_A ATFKBP42; FKBP-like, al 97.9 2.1E-05 7.3E-10 76.2 9.0 150 360-528 179-333 (338)
193 4b4t_Q 26S proteasome regulato 97.9 0.00016 5.5E-09 72.7 15.9 158 399-556 12-203 (434)
194 3n71_A Histone lysine methyltr 97.9 5.7E-05 1.9E-09 76.5 12.1 123 436-558 319-465 (490)
195 3ma5_A Tetratricopeptide repea 97.9 7.8E-05 2.7E-09 57.4 9.2 64 493-556 6-69 (100)
196 1wao_1 Serine/threonine protei 97.9 9.8E-05 3.3E-09 75.2 12.4 113 369-486 15-134 (477)
197 2kat_A Uncharacterized protein 97.8 9.3E-05 3.2E-09 58.6 9.3 76 481-556 4-81 (115)
198 1na3_A Designed protein CTPR2; 97.8 0.00012 4E-09 54.9 8.9 81 462-542 9-91 (91)
199 2l6j_A TPR repeat-containing p 97.8 0.00024 8.1E-09 55.5 11.0 67 492-558 2-68 (111)
200 1zu2_A Mitochondrial import re 97.7 1.6E-05 5.6E-10 65.8 3.6 50 510-559 62-122 (158)
201 1na3_A Designed protein CTPR2; 97.6 0.00032 1.1E-08 52.4 9.6 65 493-557 8-72 (91)
202 3n71_A Histone lysine methyltr 97.6 0.00015 5E-09 73.5 9.6 115 471-603 318-450 (490)
203 3bee_A Putative YFRE protein; 97.6 0.00032 1.1E-08 52.8 9.0 69 492-560 4-75 (93)
204 1dce_A Protein (RAB geranylger 97.6 0.00086 2.9E-08 69.6 14.6 151 405-559 43-223 (567)
205 1klx_A Cysteine rich protein B 97.5 0.0011 3.9E-08 54.3 11.8 90 468-559 31-128 (138)
206 1zu2_A Mitochondrial import re 97.4 0.00018 6.2E-09 59.6 5.5 50 479-528 63-125 (158)
207 3qwp_A SET and MYND domain-con 97.4 0.00048 1.6E-08 68.6 9.5 115 470-602 295-427 (429)
208 2kc7_A BFR218_protein; tetratr 97.4 0.00076 2.6E-08 51.4 8.4 64 468-531 6-72 (99)
209 2kat_A Uncharacterized protein 97.3 0.00068 2.3E-08 53.5 8.2 79 445-526 4-85 (115)
210 1pc2_A Mitochondria fission pr 97.3 0.0011 3.8E-08 54.2 9.4 63 493-555 31-98 (152)
211 1klx_A Cysteine rich protein B 97.3 0.0041 1.4E-07 50.8 12.4 113 405-526 9-129 (138)
212 3ly7_A Transcriptional activat 97.2 0.0095 3.2E-07 56.8 15.3 138 389-528 192-344 (372)
213 1wy6_A Hypothetical protein ST 97.2 0.045 1.5E-06 42.9 15.8 141 401-560 17-157 (172)
214 2kc7_A BFR218_protein; tetratr 97.2 0.00033 1.1E-08 53.5 4.3 85 433-527 7-94 (99)
215 3qww_A SET and MYND domain-con 97.1 0.0012 4E-08 65.7 9.0 82 475-556 311-410 (433)
216 1qsa_A Protein (soluble lytic 97.0 0.4 1.4E-05 49.7 27.6 56 262-318 75-130 (618)
217 3ma5_A Tetratricopeptide repea 96.9 0.0036 1.2E-07 47.7 8.4 63 390-454 6-69 (100)
218 3qww_A SET and MYND domain-con 96.8 0.0067 2.3E-07 60.2 11.1 91 439-529 311-422 (433)
219 3qwp_A SET and MYND domain-con 96.7 0.012 4E-07 58.6 12.1 96 435-530 296-412 (429)
220 3mkq_A Coatomer beta'-subunit; 96.7 0.12 4.2E-06 56.2 21.3 155 195-386 607-762 (814)
221 3u64_A Protein TP_0956; tetrat 96.6 0.0074 2.5E-07 55.0 9.0 87 478-564 179-276 (301)
222 3lvg_A Clathrin heavy chain 1; 96.6 5.3E-05 1.8E-09 73.4 -5.4 238 151-412 53-325 (624)
223 3ly7_A Transcriptional activat 96.6 0.033 1.1E-06 53.1 13.3 134 422-559 190-341 (372)
224 3lvg_A Clathrin heavy chain 1; 96.5 0.0038 1.3E-07 60.8 6.6 240 54-311 52-325 (624)
225 1nzn_A CGI-135 protein, fissio 96.4 0.016 5.6E-07 45.5 8.2 64 492-555 33-101 (126)
226 3mkq_A Coatomer beta'-subunit; 96.3 0.042 1.4E-06 60.0 14.8 27 462-488 681-707 (814)
227 3bee_A Putative YFRE protein; 96.3 0.025 8.7E-07 42.2 9.0 75 460-535 4-83 (93)
228 1pc2_A Mitochondria fission pr 96.0 0.027 9.2E-07 46.0 8.3 86 441-528 13-105 (152)
229 2v5f_A Prolyl 4-hydroxylase su 95.8 0.068 2.3E-06 40.8 9.4 70 465-534 8-86 (104)
230 3mkq_B Coatomer subunit alpha; 95.6 0.37 1.3E-05 40.4 13.8 129 368-520 13-141 (177)
231 1y8m_A FIS1; mitochondria, unk 95.5 0.46 1.6E-05 37.9 13.0 64 492-555 37-104 (144)
232 3mkq_B Coatomer subunit alpha; 95.4 0.84 2.9E-05 38.2 15.3 104 267-387 13-116 (177)
233 4gns_B Protein CSD3, chitin bi 94.8 0.24 8.2E-06 52.3 12.6 55 501-555 344-398 (754)
234 3u64_A Protein TP_0956; tetrat 94.5 0.061 2.1E-06 49.1 6.4 63 464-526 201-272 (301)
235 2v5f_A Prolyl 4-hydroxylase su 94.5 0.14 5E-06 38.9 7.9 64 493-556 4-74 (104)
236 1wy6_A Hypothetical protein ST 94.2 1.6 5.5E-05 34.4 12.5 139 198-356 18-156 (172)
237 3o48_A Mitochondria fission 1 94.0 0.4 1.4E-05 37.7 9.2 64 492-555 38-105 (134)
238 4b4t_P 26S proteasome regulato 93.9 1.5 5.2E-05 43.5 15.7 163 227-389 142-324 (445)
239 1nzn_A CGI-135 protein, fissio 93.8 0.69 2.4E-05 36.2 10.2 89 440-530 15-110 (126)
240 4h7y_A Dual specificity protei 93.8 0.26 8.9E-06 39.7 7.8 53 476-529 74-129 (161)
241 4h7y_A Dual specificity protei 93.5 0.37 1.3E-05 38.8 8.2 56 506-561 72-127 (161)
242 3lpz_A GET4 (YOR164C homolog); 91.8 8.3 0.00029 36.0 20.7 136 154-304 37-181 (336)
243 2wpv_A GET4, UPF0363 protein Y 91.0 9.8 0.00033 35.3 19.2 135 154-303 35-178 (312)
244 1v54_E Cytochrome C oxidase po 90.3 3.5 0.00012 30.5 9.5 58 478-535 26-86 (109)
245 3ffl_A Anaphase-promoting comp 90.2 1.9 6.7E-05 35.4 9.2 28 462-489 122-149 (167)
246 4b4t_P 26S proteasome regulato 88.1 21 0.00073 35.2 18.1 180 273-454 30-246 (445)
247 1v54_E Cytochrome C oxidase po 87.9 2.5 8.6E-05 31.2 7.3 63 406-470 25-87 (109)
248 4fhn_B Nucleoporin NUP120; pro 87.8 17 0.00057 41.1 18.0 167 261-445 814-990 (1139)
249 3lpz_A GET4 (YOR164C homolog); 87.8 18 0.00061 33.8 22.6 168 261-454 37-215 (336)
250 4ady_A RPN2, 26S proteasome re 87.6 35 0.0012 37.0 22.1 262 163-435 385-670 (963)
251 4gns_B Protein CSD3, chitin bi 86.8 3 0.0001 44.1 10.3 51 400-452 346-397 (754)
252 2ff4_A Probable regulatory pro 86.5 2.1 7.1E-05 41.7 8.6 66 499-564 176-246 (388)
253 2y69_E Cytochrome C oxidase su 85.7 8.2 0.00028 30.3 9.5 50 486-535 80-129 (152)
254 2uwj_G Type III export protein 84.7 9.9 0.00034 27.9 9.5 87 236-329 20-106 (115)
255 3txn_A 26S proteasome regulato 84.4 30 0.001 33.3 16.3 58 397-454 105-167 (394)
256 2qx5_A Nucleoporin NIC96; mRNA 84.3 15 0.0005 38.3 13.8 43 156-199 156-198 (661)
257 2p58_C Putative type III secre 84.2 11 0.00036 27.9 9.9 87 236-329 21-107 (116)
258 3ffl_A Anaphase-promoting comp 84.1 9.5 0.00032 31.4 9.9 26 225-250 66-91 (167)
259 3ltm_A Alpha-REP4; protein eng 83.9 20 0.00068 30.8 18.5 76 362-441 97-172 (211)
260 2ff4_A Probable regulatory pro 83.5 7.9 0.00027 37.5 11.1 69 395-464 175-247 (388)
261 2wpv_A GET4, UPF0363 protein Y 83.1 29 0.00099 32.1 23.4 166 364-556 37-216 (312)
262 2uwj_G Type III export protein 83.0 12 0.00041 27.5 9.1 86 340-430 21-106 (115)
263 2y69_E Cytochrome C oxidase su 82.6 5.4 0.00019 31.3 7.3 62 407-470 69-130 (152)
264 4fhn_B Nucleoporin NUP120; pro 82.5 6.4 0.00022 44.5 11.3 65 495-559 900-969 (1139)
265 3ltj_A Alpharep-4; protein eng 82.4 22 0.00075 30.2 18.8 48 258-305 27-74 (201)
266 1y8m_A FIS1; mitochondria, unk 82.1 16 0.00056 29.1 10.1 70 459-528 36-111 (144)
267 1zbp_A Hypothetical protein VP 81.9 17 0.00059 32.6 11.4 118 400-529 6-135 (273)
268 3ltm_A Alpha-REP4; protein eng 81.7 24 0.00082 30.2 18.9 61 358-419 124-184 (211)
269 2qx5_A Nucleoporin NIC96; mRNA 81.3 47 0.0016 34.5 16.2 21 473-493 549-569 (661)
270 1wdy_A 2-5A-dependent ribonucl 80.8 14 0.00049 33.3 11.6 17 368-384 224-240 (285)
271 2p58_C Putative type III secre 80.2 15 0.00053 27.0 10.3 86 340-430 22-107 (116)
272 3esl_A Checkpoint serine/threo 79.6 18 0.00062 30.8 10.3 55 507-561 92-148 (202)
273 3o48_A Mitochondria fission 1 79.4 16 0.00055 28.7 9.2 30 499-528 83-112 (134)
274 1zbp_A Hypothetical protein VP 77.0 4.7 0.00016 36.2 6.2 59 470-528 5-65 (273)
275 4b4t_R RPN7, 26S proteasome re 74.7 14 0.00047 36.4 9.8 59 465-523 134-197 (429)
276 4ady_A RPN2, 26S proteasome re 74.5 1E+02 0.0035 33.5 27.6 28 118-145 231-258 (963)
277 4b4t_R RPN7, 26S proteasome re 69.1 32 0.0011 33.7 11.0 94 362-455 133-237 (429)
278 3mv2_A Coatomer subunit alpha; 68.7 73 0.0025 29.4 12.3 59 485-557 196-256 (325)
279 4a1g_A Mitotic checkpoint seri 68.7 37 0.0013 27.4 9.1 79 480-561 53-134 (152)
280 1wdy_A 2-5A-dependent ribonucl 65.5 36 0.0012 30.4 10.2 82 266-348 152-239 (285)
281 2wvi_A Mitotic checkpoint seri 65.0 50 0.0017 27.1 9.4 68 491-561 60-129 (164)
282 1oyz_A Hypothetical protein YI 64.6 80 0.0027 28.3 21.0 17 359-375 141-157 (280)
283 3hra_A Ankyrin repeat family p 63.9 47 0.0016 27.8 10.0 16 162-177 12-27 (201)
284 1n11_A Ankyrin; clathrin, BAND 62.3 47 0.0016 32.3 10.9 19 159-177 84-102 (437)
285 1oyz_A Hypothetical protein YI 60.9 93 0.0032 27.8 18.5 85 386-478 137-222 (280)
286 3kea_A K1L; tropism, ANK repea 57.4 38 0.0013 30.8 8.6 12 271-282 138-149 (285)
287 4g8k_A 2-5A-dependent ribonucl 56.3 1.2E+02 0.0043 27.9 12.7 239 102-361 38-330 (337)
288 4b4t_S RPN3, 26S proteasome re 54.8 70 0.0024 31.9 10.1 63 426-488 231-296 (523)
289 1k1a_A B-cell lymphoma 3-encod 53.2 39 0.0013 29.4 7.7 50 128-177 17-68 (241)
290 2nsz_A Programmed cell death p 53.0 64 0.0022 25.2 7.9 63 364-426 11-78 (129)
291 1qsa_A Protein (soluble lytic 52.0 2.2E+02 0.0074 29.4 32.4 366 154-548 74-470 (618)
292 3eu9_A Huntingtin-interacting 52.0 55 0.0019 28.2 8.6 20 158-177 45-64 (240)
293 3kea_A K1L; tropism, ANK repea 51.8 32 0.0011 31.3 7.0 15 312-326 210-224 (285)
294 3b7b_A Euchromatic histone-lys 50.5 54 0.0019 28.4 8.3 19 159-177 81-99 (237)
295 3esl_A Checkpoint serine/threo 50.4 1.2E+02 0.004 25.8 10.4 67 393-461 82-149 (202)
296 1k1a_A B-cell lymphoma 3-encod 48.1 85 0.0029 27.1 9.2 25 196-220 15-39 (241)
297 3ltj_A Alpharep-4; protein eng 48.0 1.2E+02 0.0041 25.3 19.2 47 258-304 120-166 (201)
298 2r9g_A AAA ATPase, central reg 46.8 1.2E+02 0.0041 25.7 8.8 63 293-356 14-84 (204)
299 3bqo_A Telomeric repeat-bindin 45.6 71 0.0024 27.0 7.1 69 478-546 94-169 (211)
300 3jxi_A Vanilloid receptor-rela 45.0 37 0.0012 30.1 6.2 86 92-177 11-115 (260)
301 2ion_A PDCD4, programmed cell 45.0 60 0.0021 26.2 6.7 63 364-426 13-80 (152)
302 4aez_C MAD3, mitotic spindle c 44.7 87 0.003 27.2 7.9 30 494-523 150-179 (223)
303 1n11_A Ankyrin; clathrin, BAND 44.1 1.5E+02 0.005 28.7 11.0 138 368-518 217-365 (437)
304 3ljn_A Hypothetical protein; a 43.8 57 0.002 30.7 7.8 52 159-214 57-108 (364)
305 2d2s_A Exocyst complex compone 42.3 1.1E+02 0.0038 26.8 8.5 23 296-318 24-46 (235)
306 1ug3_A EIF4GI, eukaryotic prot 42.0 2.2E+02 0.0075 26.6 11.4 23 156-178 15-37 (339)
307 3eu9_A Huntingtin-interacting 41.4 84 0.0029 27.0 8.0 72 102-177 22-98 (240)
308 3b7b_A Euchromatic histone-lys 40.2 86 0.003 27.0 7.9 47 127-177 18-66 (237)
309 3mkr_B Coatomer subunit alpha; 39.8 1.6E+02 0.0056 27.1 9.4 59 485-557 187-247 (320)
310 2d2s_A Exocyst complex compone 39.7 99 0.0034 27.1 7.8 30 527-556 90-119 (235)
311 4gq2_M Nucleoporin NUP120; bet 39.2 2E+02 0.0069 31.5 11.9 28 496-523 899-926 (950)
312 3bge_A Predicted ATPase; struc 36.1 1.5E+02 0.0053 25.0 7.8 46 294-339 8-56 (201)
313 3aji_A 26S proteasome non-ATPa 35.5 1.4E+02 0.0047 25.5 8.4 14 163-176 48-61 (231)
314 3i5p_A Nucleoporin NUP170; hel 35.5 3.2E+02 0.011 27.4 11.5 68 491-558 175-247 (525)
315 3hra_A Ankyrin repeat family p 34.1 1.2E+02 0.0041 25.1 7.6 83 196-284 11-94 (201)
316 3ctd_A Putative ATPase, AAA fa 34.0 1.9E+02 0.0066 24.7 8.2 50 291-340 33-85 (213)
317 2r9g_A AAA ATPase, central reg 30.5 2.5E+02 0.0085 23.8 9.8 39 402-441 25-63 (204)
318 2fe3_A Peroxide operon regulat 30.2 1.2E+02 0.0043 24.0 6.4 42 398-439 28-69 (145)
319 4a1g_A Mitotic checkpoint seri 30.0 2.2E+02 0.0074 22.9 9.4 53 408-461 82-135 (152)
320 3bge_A Predicted ATPase; struc 28.8 2.6E+02 0.0091 23.6 8.3 44 397-440 10-56 (201)
321 2nsz_A Programmed cell death p 28.7 84 0.0029 24.5 5.0 22 295-316 12-33 (129)
322 3ctd_A Putative ATPase, AAA fa 26.9 3E+02 0.01 23.5 9.0 46 396-441 37-85 (213)
323 3re2_A Predicted protein; meni 26.1 2.4E+02 0.0081 26.5 7.8 82 460-546 294-393 (472)
324 3aji_A 26S proteasome non-ATPa 25.9 1.8E+02 0.0061 24.7 7.4 19 159-177 10-28 (231)
325 3qye_A TBC1 domain family memb 25.5 4E+02 0.014 24.5 11.2 75 311-385 209-287 (331)
326 3kae_A CDC27, possible protein 25.3 2.9E+02 0.0099 22.8 15.6 80 372-453 45-141 (242)
327 2zu6_B Programmed cell death p 25.2 3.8E+02 0.013 24.5 9.5 184 191-377 7-254 (307)
328 2wvi_A Mitotic checkpoint seri 25.1 2.8E+02 0.0096 22.6 9.8 53 409-462 78-131 (164)
329 3ygs_P Procaspase 9; apoptosis 25.1 98 0.0033 22.6 4.5 38 374-411 51-88 (97)
330 3qye_A TBC1 domain family memb 25.0 4.1E+02 0.014 24.5 10.2 89 208-298 209-302 (331)
331 2rfa_A Transient receptor pote 25.0 1.1E+02 0.0037 26.2 5.7 87 158-253 78-182 (232)
332 2xig_A Ferric uptake regulatio 24.8 1.9E+02 0.0066 23.0 6.7 45 396-440 31-75 (150)
333 4b4t_S RPN3, 26S proteasome re 24.7 1.5E+02 0.0052 29.6 6.9 67 462-528 231-304 (523)
334 2fe3_A Peroxide operon regulat 24.6 1.9E+02 0.0064 22.9 6.6 38 235-274 34-71 (145)
335 3jxi_A Vanilloid receptor-rela 24.2 72 0.0025 28.1 4.5 55 195-249 10-73 (260)
336 4aez_C MAD3, mitotic spindle c 24.2 2.5E+02 0.0087 24.2 7.5 53 408-461 131-184 (223)
337 2ion_A PDCD4, programmed cell 23.8 1.1E+02 0.0038 24.6 5.0 23 294-316 13-35 (152)
338 1ya0_A SMG-7 transcript varian 23.4 2.2E+02 0.0076 28.3 8.1 51 504-554 162-212 (497)
339 3twr_A Tankyrase-2; ankyrin re 22.8 2.7E+02 0.0094 21.9 7.6 19 159-177 12-30 (165)
340 1bd8_A P19INK4D CDK4/6 inhibit 22.8 1.8E+02 0.0061 22.7 6.3 16 162-177 9-24 (156)
341 2etb_A Transient receptor pote 22.7 1.1E+02 0.0039 26.7 5.5 88 90-177 6-112 (256)
342 4gq2_M Nucleoporin NUP120; bet 22.3 7.9E+02 0.027 26.8 15.3 128 264-405 815-950 (950)
343 3ljn_A Hypothetical protein; a 21.7 2.1E+02 0.0071 26.7 7.4 81 471-553 179-266 (364)
344 2o03_A Probable zinc uptake re 21.6 1.7E+02 0.0058 22.6 5.6 44 193-236 16-59 (131)
345 2cfu_A SDSA1; SDS-hydrolase, l 21.5 1.7E+02 0.0059 30.4 7.1 62 478-542 436-497 (658)
346 2pnn_A Transient receptor pote 21.3 2.1E+02 0.0072 25.2 7.1 94 82-177 10-123 (273)
347 4ets_A Ferric uptake regulatio 20.7 1.6E+02 0.0055 23.9 5.4 13 441-453 47-59 (162)
348 1bd8_A P19INK4D CDK4/6 inhibit 20.5 82 0.0028 24.9 3.7 15 163-177 43-57 (156)
349 3eiq_C Programmed cell death p 20.3 5.4E+02 0.019 24.1 16.5 24 225-248 57-80 (358)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-42 Score=370.11 Aligned_cols=523 Identities=9% Similarity=-0.033 Sum_probs=415.3
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHccCCchHHHh---hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHC
Q 047146 36 SVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL---SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIK 111 (608)
Q Consensus 36 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~ 111 (608)
.+...+++|......++..++... ....++++|.+..++. .++.+++..|+.++..+.+.|++++ +.+|++|..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~- 112 (597)
T 2xpi_A 35 SMGALNANNSNSQLSTLTISPMTY-LANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD- 112 (597)
T ss_dssp ----------CTTSCGGGGCGGGG-GC---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred cHHHHhhccccccccceeechhhh-hcccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh-
Confidence 344445555555444443333222 2233556666666655 5666889999999999999999999 999999985
Q ss_pred CCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC----------
Q 047146 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP---------- 181 (608)
Q Consensus 112 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------- 181 (608)
..|+..++..+..+|...|++++|..+++.+... +++..+++.++.+|.+.|++++|.++|+++...
T Consensus 113 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 113 -ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp -HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------
T ss_pred -hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccc
Confidence 4678899999999999999999999999987653 578899999999999999999999999963221
Q ss_pred -----CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCCchHH--HHH-HHHHHHcc
Q 047146 182 -----QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD-GMILVIVLSACSKLGDLSLG--IKI-HRYITDNH 252 (608)
Q Consensus 182 -----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~ 252 (608)
+...+..+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+...+..+.+ ..+ +..+...+
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 112357899999999999999999999999998854 44 34455554444333222211 111 34444433
Q ss_pred CCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHH
Q 047146 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330 (608)
Q Consensus 253 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 330 (608)
... ...+++.++..|.+.|++++|.++|+++.. ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..
T Consensus 268 ~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 344 (597)
T 2xpi_A 268 AAF--LRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPL 344 (597)
T ss_dssp HHH--HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHH
T ss_pred HHH--HHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHH
Confidence 222 556777889999999999999999999986 789999999999999999999999999999865 457788999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh
Q 047146 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKA 407 (608)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 407 (608)
++.++...|++++|..++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999998654 5678899999999999999999999999875 35688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047146 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487 (608)
Q Consensus 408 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (608)
++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|++
T Consensus 424 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 424 DQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999853 347789999999999999999999999999873 344688999999999999999999999998
Q ss_pred C-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 488 M-------PLVPD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 488 ~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+ +..|+ ..+|..++.+|.+.|++++|...++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~- 579 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI- 579 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Confidence 8 44777 7899999999999999999999999999999999999999999999999999999999999853
Q ss_pred CccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHH
Q 047146 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598 (608)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 598 (608)
+|+++..+..|.+++
T Consensus 580 -------------------------~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 580 -------------------------SPNEIMASDLLKRAL 594 (597)
T ss_dssp -------------------------CTTCHHHHHHHHHTT
T ss_pred -------------------------CCCChHHHHHHHHHH
Confidence 466777777776654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-37 Score=332.65 Aligned_cols=477 Identities=9% Similarity=0.001 Sum_probs=404.1
Q ss_pred CchhHHH-HHHHHHccCCchHHHh---hC--CCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHH
Q 047146 54 QHQTQIL-YDKIISLSRGNEIENL---SL--QNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKA 126 (608)
Q Consensus 54 ~~~~~~~-l~~~~~~~g~~~~A~~---~~--~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~ 126 (608)
++...++ ++..|.+.|++++|.. .+ ..|+..+|+.++.+|.+.|++++ +.+|+.+.. ..++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHH
Confidence 5667777 9999999999999998 11 24677899999999999999999 999999864 36788899999999
Q ss_pred HhccCCcHHHHHHHHHHHHh---------------CcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHH
Q 047146 127 CWQSQSLRVGQQVHAYSMKT---------------ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191 (608)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 191 (608)
+.+.|++++|..+++.+... +.+.+..+|+.++.+|.+.|++++|.++|++|.+..+ .+...|.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHH
Confidence 99999999999999853221 2234688999999999999999999999999765432 2445566
Q ss_pred HHHHHHHhCCCchHHHH--H-HHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 047146 192 TLIQAYVKMDYPTEAIL--S-FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268 (608)
Q Consensus 192 ~li~~~~~~g~~~~a~~--~-~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 268 (608)
.+...+...+..+.+.. + +..+...+..++..+|..++..|.+.|++++|.++++.+.+. + ++..+++.++.+
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~~~l~~~ 314 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--E--KSSDLLLCKADT 314 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--G--GCHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--C--chHHHHHHHHHH
Confidence 66555544433222221 1 455555555556667788888999999999999999998876 2 389999999999
Q ss_pred HHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHH
Q 047146 269 YLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345 (608)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 345 (608)
|.+.|++++|.++|+++. +.+..+|+.++.++.+.|++++|..+++++.... +.+..++..+...|.+.|++++|.
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999986 4578899999999999999999999999998653 567889999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047146 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422 (608)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 422 (608)
++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9999998764 4467799999999999999999999999875 3478999999999999999999999999999853
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHH
Q 047146 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY---NLQPQ--TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAF 495 (608)
Q Consensus 423 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 495 (608)
+.+..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| +..
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 3467899999999999999999999999998732 56787 789999999999999999999999998 4345 889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 540 (608)
+|..+..+|...|++++|.+.++++.+++|+++..+..++.+|..
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.2e-26 Score=230.35 Aligned_cols=348 Identities=15% Similarity=0.112 Sum_probs=206.6
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCC
Q 047146 196 AYVKMDYPTEAILSFFDMCQANLRPD-GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274 (608)
Q Consensus 196 ~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 274 (608)
.+.+.|++++|++.+.++.+. .|+ ...+..+...+...|+++.|...++...+..+. +..++..+...|.+.|+
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCC
Confidence 344555555555555555443 222 233344444455555555555555555554322 45555555666666666
Q ss_pred hHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hHHHHHHHHHHhccCChHHHHHHHHH
Q 047146 275 IPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD-DFTLVCVLNSCANIGWLELGKWVHTY 350 (608)
Q Consensus 275 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 350 (608)
+++|.+.|+++. +.+..+|..+..++...|++++|++.|+++.+. .|+ ...+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666555543 223345555666666666666666666665553 233 23344444555555666666666665
Q ss_pred HHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CH
Q 047146 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DE 426 (608)
Q Consensus 351 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~ 426 (608)
+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..+++.... .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 55543 23345556666666666666666666665542 23455666666666677777777777666653 44 34
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PL-VPDAFVWGALLGA 503 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 503 (608)
.++..+..++...|++++|.+.|+++.+ ..| +...|..++.++.+.|++++|.+.++++ .. +++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 5666666667777777777777776665 223 3556666777777777777777777666 22 2356666667777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+...|++++|...++++.+..|++...+..++.+|.+.|++++|.+.++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777777777777777777766777777777777777777777777653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.3e-26 Score=233.07 Aligned_cols=374 Identities=13% Similarity=0.078 Sum_probs=249.3
Q ss_pred HHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchH
Q 047146 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205 (608)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 205 (608)
.+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++..... .+.+..+|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHH
Confidence 3445566666666665555542 122334444455555556666665555543321 22344455555555555555555
Q ss_pred HHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHcc
Q 047146 206 AILSFFDMCQANLRPD-GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284 (608)
Q Consensus 206 a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (608)
|++.|+++.+. .|+ ..++..+..++...|++++|.+.++.+.+..+. +..++..+...|...|++++|.+.|+
T Consensus 86 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~- 159 (388)
T 1w3b_A 86 AIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYL- 159 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTSCHHHHHHHHH-
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHH-
Confidence 55555555542 222 234555555555555555555555555554322 33444444445555555555555554
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHH
Q 047146 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364 (608)
Q Consensus 285 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (608)
++.+.. +.+..++..+...+...|+++.|...++.+.+.+ +.+...+.
T Consensus 160 ------------------------------~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 207 (388)
T 1w3b_A 160 ------------------------------KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI 207 (388)
T ss_dssp ------------------------------HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ------------------------------HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 444331 1223344444444444444444444444444433 22345556
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccc
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAG 440 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 440 (608)
.+..++...|++++|...|++.. ..+..+|..+...|...|++++|+..|+++.+. .| +..++..+..++.+.|
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC
Confidence 67777888888888888887654 235678888999999999999999999999984 55 4568999999999999
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVME 518 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 518 (608)
++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++++ ...| +..++..+...+.+.|++++|...++
T Consensus 286 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999883 3557889999999999999999999999998 5556 57889999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 519 NLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 519 ~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
++.+..|+++..|..++.++.+.|+
T Consensus 364 ~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 364 EAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999887764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.1e-27 Score=245.12 Aligned_cols=182 Identities=15% Similarity=0.206 Sum_probs=132.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC---------hHHHHHHHHHHHHcCCCCchhH
Q 047146 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW---------LELGKWVHTYLDKNHINTDGFI 362 (608)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 362 (608)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++++.|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666677777777777777777777777777777777777777765443 5667777777777777777777
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047146 363 GNALVDMYAKCGRIDQAFGVFRSMK----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438 (608)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 438 (608)
|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 7777777777777777777777765 367777777777777777777777777777777777777777777777777
Q ss_pred cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 047146 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 474 (608)
.|++++|.+++++|.+ .+..|+..+|+.++..|.+
T Consensus 188 ~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 7777777777777776 5777777777777777654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.2e-27 Score=245.00 Aligned_cols=187 Identities=13% Similarity=0.109 Sum_probs=148.8
Q ss_pred chHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCC---------cHHHHHHHHHHHHhCcCCcHh
Q 047146 84 YLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQS---------LRVGQQVHAYSMKTALLSNVY 153 (608)
Q Consensus 84 ~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 153 (608)
..++.+|++|++.|+.++ +++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 357777888888888887 8888888888888888888888888876543 567788888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 047146 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233 (608)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 233 (608)
+|++||++|++.|++++|.++|++|...+..||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888887777888888888888888888888888888888888888888888888888888
Q ss_pred ccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhc
Q 047146 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272 (608)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 272 (608)
+.|++++|.+++++|.+.+. .|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~--~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVR--QVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTS--SBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHHhcC
Confidence 88888888888888887743 44778888777777653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.4e-23 Score=213.01 Aligned_cols=396 Identities=9% Similarity=-0.029 Sum_probs=317.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 047146 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231 (608)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 231 (608)
...+..+...+.+.|++++|...|+++.... |+..+|..+..++.+.|++++|+..++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4566777888999999999999999876544 688899999999999999999999999998864 3356788999999
Q ss_pred hhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHH-----------------------------
Q 047146 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF----------------------------- 282 (608)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~----------------------------- 282 (608)
+...|++++|...++.+.+.++. +......++..+.+......+.+.+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDF---NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSC---CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 99999999999999999988643 3333334444433322222222211
Q ss_pred ---------ccCC---------CC-ChhhHHHHHHHHHh---cCChhHHHHHHHHHHh-----CCCCC--------ChHH
Q 047146 283 ---------DEMP---------VK-NVVSWNSMIAGLTH---RGQFKEALDIFRRMQG-----LGLKP--------DDFT 327 (608)
Q Consensus 283 ---------~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t 327 (608)
.... .| +...+......+.. .|++++|+..|+++.+ ..-.| +..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 1111 01 13344444454554 8999999999999988 32122 2456
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 047146 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIH 404 (608)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 404 (608)
+..+...+...|+++.|...+..+.+.... ...+..+..+|...|++++|...++.+.. .+...|..+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 777888899999999999999999887644 88888999999999999999999998753 4678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047146 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 484 (608)
|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999852 225568888999999999999999999999873 233577899999999999999999999
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 485 IKSM----PLVPD----AFVWGALLGACKI---HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 485 ~~~~----~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
++++ +..++ ...|..+...+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|...+++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9987 22232 4488889999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 047146 554 MKERK 558 (608)
Q Consensus 554 m~~~~ 558 (608)
..+.+
T Consensus 475 a~~~~ 479 (514)
T 2gw1_A 475 SADLA 479 (514)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 98643
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=9.6e-22 Score=201.73 Aligned_cols=337 Identities=11% Similarity=0.063 Sum_probs=249.6
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHH
Q 047146 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264 (608)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 264 (608)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.++. +..++..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 99 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD---FTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---cHHHHHH
Confidence 456667778888888888888888888887642 335667777778888888888888888888877543 5667777
Q ss_pred HHHHHHhcCChHHHHHHHccCCC--C-Ch---hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 047146 265 LIDMYLKCGNIPSARKVFDEMPV--K-NV---VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338 (608)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 338 (608)
+..+|.+.|++++|.+.|+++.. | +. ..|..++..+...+ +..+...+...
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~ 156 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGS 156 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHc
Confidence 77777777777777777776653 2 22 45555544311111 11122234455
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 047146 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~ 415 (608)
|+++.|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+
T Consensus 157 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666655543 3355667778888888888888888888775 3467888889999999999999999999
Q ss_pred HHHHCCCCCCHH-HHHHH------------HHHHhccccHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCC
Q 047146 416 EMSQVGIEPDEV-TFVGV------------LSACSHAGLVEEGCKHFLDMSRVYNLQPQ-----TEHYGCMVDLFGRAGL 477 (608)
Q Consensus 416 ~m~~~g~~p~~~-~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~ 477 (608)
++... .|+.. .+..+ ...|.+.|++++|...|+.+.+. .|+ ...+..++.++.+.|+
T Consensus 236 ~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 236 ECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCC
Confidence 98874 55443 44433 78899999999999999999873 344 4578899999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH------------HHHHhCC-
Q 047146 478 IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT------------NIYSSKN- 542 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g- 542 (608)
+++|++.++++ ...| +...|..+..+|...|++++|...++++.++.|+++..+..++ +.|...|
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999999987 4445 7889999999999999999999999999999999999999888 4455556
Q ss_pred ----ChHHHHHHHHHH
Q 047146 543 ----RWKEALKLRKKM 554 (608)
Q Consensus 543 ----~~~~A~~~~~~m 554 (608)
+.+++.+.++++
T Consensus 391 ~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKL 406 (450)
T ss_dssp STTCCTTHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHH
Confidence 556667777763
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.9e-22 Score=207.56 Aligned_cols=442 Identities=10% Similarity=-0.064 Sum_probs=294.4
Q ss_pred hHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHH
Q 047146 85 LYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYA 163 (608)
Q Consensus 85 ~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 163 (608)
.|......+.+.|++++ +..|+++.+.. ||..++..+..++...|++++|...++.+++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45555566677777777 77777777654 566677777777777777777777777777654 234556777777777
Q ss_pred hcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHH
Q 047146 164 VCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243 (608)
Q Consensus 164 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 243 (608)
+.|++++|...|+.+....+ ++......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 77777777777776554332 23333334443333322222222222222111111111111100000001111111111
Q ss_pred HHHHHHHccCC-------CCCchHHHHHHHHHHHh---cCChHHHHHHHccCCC----------------C-ChhhHHHH
Q 047146 244 IHRYITDNHFN-------LSPDVFIHNALIDMYLK---CGNIPSARKVFDEMPV----------------K-NVVSWNSM 296 (608)
Q Consensus 244 ~~~~~~~~~~~-------~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l 296 (608)
+...+...... ...+...+..+...+.. .|++++|...|+++.. | +..+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11111111000 01124444445554554 7888888888876543 1 24567778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 376 (608)
...+...|++++|...|+++.+.. |+...+..+...+...|+++.|...+..+.+.. +.+..++..+..+|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 888889999999999999888764 447778888888889999999999998887764 34566788889999999999
Q ss_pred HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhH
Q 047146 377 DQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 377 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 453 (608)
++|...|++.. ..+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999998764 3466788899999999999999999999998752 3355688888999999999999999999987
Q ss_pred hhcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 454 RVYNLQPQ----TEHYGCMVDLFGR---AGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 454 ~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
+...-.++ ...+..+...+.. .|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 73222232 3488999999999 99999999999987 3344 67788899999999999999999999999999
Q ss_pred CCCCchHHHH
Q 047146 525 PEGDGAYILM 534 (608)
Q Consensus 525 p~~~~~~~~l 534 (608)
|+++..+..+
T Consensus 480 ~~~~~~~~~~ 489 (514)
T 2gw1_A 480 RTMEEKLQAI 489 (514)
T ss_dssp SSHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 9988776655
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=8.2e-22 Score=207.16 Aligned_cols=424 Identities=9% Similarity=0.005 Sum_probs=255.0
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHh
Q 047146 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199 (608)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 199 (608)
+...-..+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|+...... +.+..+|..+...+..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 3344444555555555555555555543 1244555555555555666666666555543322 2244455555555666
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHH
Q 047146 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279 (608)
Q Consensus 200 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 279 (608)
.|++++|+..|+.+. ..|+... ..+..+...+....+...++.+....++..+........+..+....+.+.+.
T Consensus 106 ~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLS---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHHh---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 666666666654221 1121111 11122222333345555555554432111111111233344455666667776
Q ss_pred HHHccCCCCChh---hHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCC--------hHHHHHHHHHHhccCC
Q 047146 280 KVFDEMPVKNVV---SWNSMIAGLTH--------RGQFKEALDIFRRMQGLGLKPD--------DFTLVCVLNSCANIGW 340 (608)
Q Consensus 280 ~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~~ 340 (608)
..+......+.. .+..+...+.. .|++++|+.+++++.+. .|+ ..++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 666666544332 23333322222 24677788888777764 333 1235555566677778
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047146 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 417 (608)
++.|...+..+.+.. |+...+..+...|...|++++|.+.|++.. ..+..+|..+...+...|++++|+..++++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888888888777764 336667777778888888888888887664 245677788888888888888888888888
Q ss_pred HHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----C---
Q 047146 418 SQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM----P--- 489 (608)
Q Consensus 418 ~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~--- 489 (608)
.+. .| +...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++ +
T Consensus 337 ~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 337 QSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 774 34 3457777778888888888888888888763 2334667778888888888888888888776 1
Q ss_pred -CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 490 -LVPDAFVWGALLGACKIH----------AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 490 -~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
.......+......+... |++++|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 111222344444566666 888888888888888888888888888888888888888888888887644
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.3e-21 Score=198.92 Aligned_cols=305 Identities=13% Similarity=0.080 Sum_probs=237.9
Q ss_pred CHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHH
Q 047146 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMI 297 (608)
Q Consensus 221 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 297 (608)
+...+..+...+...|++++|..+|+.+++..+. +..++..+..+|...|++++|...|+++. +.+..+|..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4456667777777777777777777777766433 56677777777777777777777777664 33456677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCh----HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047146 298 AGLTHRGQFKEALDIFRRMQGLGLKPDD----FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373 (608)
Q Consensus 298 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 373 (608)
.+|...|++++|...|+++.+. .|+. ..+..+...+... .+..+...|.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~ 156 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGS 156 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHc
Confidence 7777777777777777777664 3433 3333333322111 123345668889
Q ss_pred CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 047146 374 GRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450 (608)
Q Consensus 374 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 450 (608)
|++++|...|+.+. ..+...+..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+
T Consensus 157 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999875 3577889999999999999999999999998852 3467799999999999999999999999
Q ss_pred HhHhhcCCCC-ChhHHHHH------------HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHH
Q 047146 451 DMSRVYNLQP-QTEHYGCM------------VDLFGRAGLIREALDLIKSM-PLVPD-----AFVWGALLGACKIHAKVE 511 (608)
Q Consensus 451 ~~~~~~~~~p-~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~ 511 (608)
.+.+. .| +...+..+ +..+.+.|++++|.+.++++ ...|+ ...+..+...+.+.|+++
T Consensus 236 ~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 99873 44 34455444 88999999999999999998 44554 447888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+|...++++.+..|+++.+|..++.+|...|++++|...++++.+.
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999863
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=4.3e-20 Score=193.99 Aligned_cols=431 Identities=11% Similarity=0.007 Sum_probs=317.2
Q ss_pred cchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHH
Q 047146 83 VYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRL 161 (608)
Q Consensus 83 ~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 161 (608)
...|..+...+.+.|++++ +..|+++.+.. +.+..++..+..++...|++++|...++.+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3567777788899999999 99999998764 2366788888888999999999999999998875 3457788899999
Q ss_pred HHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC------CCCCCHhHHHHHHHHhhcc
Q 047146 162 YAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA------NLRPDGMILVIVLSACSKL 235 (608)
Q Consensus 162 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~ 235 (608)
|...|++++|...|+.+.. .+ + ..+..+..+...+...+|+..++++... ...|+...... +...
T Consensus 103 ~~~~g~~~~A~~~~~~~~~-~~--~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~ 173 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL-NG--D--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGI 173 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHT
T ss_pred HHHcCCHHHHHHHHHHHhc-CC--C--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHh
Confidence 9999999999999964322 22 2 2223344555556667899999888543 12344443333 3333
Q ss_pred CCchHHHHHHHHHHHccCCCCCc-hHHHHHHHHHHHh--------cCChHHHHHHHccCCC--CC--------hhhHHHH
Q 047146 236 GDLSLGIKIHRYITDNHFNLSPD-VFIHNALIDMYLK--------CGNIPSARKVFDEMPV--KN--------VVSWNSM 296 (608)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~--~~--------~~~~~~l 296 (608)
.+.+.+...+.... ...|. ......+...+.. .|++++|..+|+++.. |+ ..+|..+
T Consensus 174 ~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 174 FDSHLEVSSVNTSS----NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249 (537)
T ss_dssp SCHHHHHHTSCCCC----SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcc----ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence 44443333222211 11111 1233333333332 2478889988888763 22 2246667
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 376 (608)
...+...|++++|+..|++..+. .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+..+|...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 77888999999999999999886 5667888888899999999999999999998875 34677889999999999999
Q ss_pred HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhH
Q 047146 377 DQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 377 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 453 (608)
++|...|++.. ..+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.++.+.
T Consensus 327 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999875 3456889999999999999999999999999852 3345688889999999999999999999987
Q ss_pred hhcCCCC----ChhHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 454 RVYNLQP----QTEHYGCMVDLFGRA----------GLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 454 ~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
+...-.+ ....+..+...+.+. |++++|...++++ ...| +...+..+...+...|++++|...+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 7321111 123345556778888 9999999999988 4344 6788999999999999999999999
Q ss_pred HHHHhcCCCCCchHH
Q 047146 518 ENLVRFEPEGDGAYI 532 (608)
Q Consensus 518 ~~~~~~~p~~~~~~~ 532 (608)
+++.++.|+++....
T Consensus 486 ~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 486 EDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHC--CHHHHH
T ss_pred HHHHHhCCCcHHHHH
Confidence 999999999875543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=5.6e-19 Score=174.94 Aligned_cols=325 Identities=13% Similarity=0.065 Sum_probs=245.8
Q ss_pred CHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHH
Q 047146 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMI 297 (608)
Q Consensus 221 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 297 (608)
|...+..+...+...|++++|...++.+++..+. +..++..+...|...|++++|...|++.. +.+...|..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3456777778888888888888888888887544 67788888888888888888888888765 33566788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC---Ch-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047146 298 AGLTHRGQFKEALDIFRRMQGLGLKP---DD-FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373 (608)
Q Consensus 298 ~~~~~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 373 (608)
..+...|++++|...|++..+. .| +. ..+..+.... . ...+..+...+...
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHc
Confidence 8888888888888888888775 34 22 2222221110 0 01123345677788
Q ss_pred CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 047146 374 GRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450 (608)
Q Consensus 374 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 450 (608)
|++++|.+.|+++. ..+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++
T Consensus 134 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888765 3466778888888888888888888888888742 3356688888888888888999888888
Q ss_pred HhHhhcCCCC-ChhHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHH
Q 047146 451 DMSRVYNLQP-QTEHYG------------CMVDLFGRAGLIREALDLIKSM-PLVPD-A----FVWGALLGACKIHAKVE 511 (608)
Q Consensus 451 ~~~~~~~~~p-~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~ 511 (608)
.+.+. .| +...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|+++
T Consensus 213 ~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 213 ECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence 88763 23 233332 3367788999999999999987 33443 3 23445678899999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHH
Q 047146 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 591 (608)
+|...++++.+..|+++..+..++.+|.+.|++++|.+.+++..+ ..|+++.++
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~ 343 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------------HNENDQQIR 343 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------TCTTCHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChHHH
Confidence 999999999999999999999999999999999999999999974 357888888
Q ss_pred HHHHHHHHHHhh
Q 047146 592 KLLDEIMHQSKN 603 (608)
Q Consensus 592 ~~l~~~~~~~~~ 603 (608)
..|.++...+++
T Consensus 344 ~~l~~~~~~~~~ 355 (359)
T 3ieg_A 344 EGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888777764
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=3.3e-18 Score=169.36 Aligned_cols=325 Identities=9% Similarity=0.011 Sum_probs=235.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHH
Q 047146 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265 (608)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 265 (608)
|+..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|+++.|...++.+.+..+. +...+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---FTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cchHHHHH
Confidence 45567888999999999999999999998753 345778889999999999999999999999998544 67899999
Q ss_pred HHHHHhcCChHHHHHHHccCCCCC------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 047146 266 IDMYLKCGNIPSARKVFDEMPVKN------VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339 (608)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 339 (608)
..+|...|++++|...|++....+ ...+..+...+. ...+..+...+...|
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 999999999999999999886432 333443311100 001112223334444
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 047146 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSE 416 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~ 416 (608)
+++.|...+..+.+.. +.+..++..+..+|...|++++|...+++... .+...|..+...+...|++++|...+++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444444332 23344556666777777777777777776542 3566777777788888888888888888
Q ss_pred HHHCCCCCCH-HHHH------------HHHHHHhccccHHHHHHHHHHhHhhcCCCCCh--hHHHHHHHHHHhcCCHHHH
Q 047146 417 MSQVGIEPDE-VTFV------------GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT--EHYGCMVDLFGRAGLIREA 481 (608)
Q Consensus 417 m~~~g~~p~~-~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A 481 (608)
..+. .|+. ..+. .+...+...|++++|...++.+.+...-.+.. ..+..+...+.+.|++++|
T Consensus 214 a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 7764 3433 2222 23556888899999999999988732111111 3355678899999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047146 482 LDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 482 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 540 (608)
.+.+++. ...| +..+|..+...+...|++++|...++++.+..|+++..+..+..++..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999988 4445 788999999999999999999999999999999998888887776554
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=9.6e-18 Score=163.96 Aligned_cols=184 Identities=14% Similarity=0.058 Sum_probs=127.0
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
..+..+..+|...|++++|...|++.. ..+...+..+...|...|++++|...+++..+.. +.+...+..+...+.
T Consensus 126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAF 204 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 334455555555556666555555543 1234555666667777777777777777776642 224557777777777
Q ss_pred ccccHHHHHHHHHHhHhhcC-------CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 047146 438 HAGLVEEGCKHFLDMSRVYN-------LQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHA 508 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 508 (608)
..|++++|...++.+.+... .+.....+..+..+|.+.|++++|.+.+++. ...| +...|..+...+...|
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 284 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhc
Confidence 77888888777777766221 1234567888888888888888888888877 3333 5677888888888899
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhCCChH
Q 047146 509 KVELAEIVMENLVRFEPEGDGAYILMTNIY-SSKNRWK 545 (608)
Q Consensus 509 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 545 (608)
++++|...++++.+..|+++..+..++.++ ...|+.+
T Consensus 285 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999998888888888888 4555543
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=4.5e-16 Score=162.82 Aligned_cols=413 Identities=9% Similarity=-0.020 Sum_probs=258.6
Q ss_pred CceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHH
Q 047146 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195 (608)
Q Consensus 116 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 195 (608)
|...|..++.. .+.|+++.|..+++.+++. .+.+...|..++..+.+.|++++|..+|++..... |++..|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 34455555653 4556666666666666653 22345566666666666666666666666655433 34445555553
Q ss_pred HH-HhCCCchHHHH----HHHHHHH-CCCCC-CHhHHHHHHHHhhc---------cCCchHHHHHHHHHHHccCCCCCch
Q 047146 196 AY-VKMDYPTEAIL----SFFDMCQ-ANLRP-DGMILVIVLSACSK---------LGDLSLGIKIHRYITDNHFNLSPDV 259 (608)
Q Consensus 196 ~~-~~~g~~~~a~~----~~~~m~~-~~~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~p~~ 259 (608)
.. ...|+.++|.+ +|++... .|..| +...|...+..... .|+++.|..+|+..++. +..+..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~~~~ 165 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMINIE 165 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCTTHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhhhHH
Confidence 22 23455555544 4444432 23333 23344444444332 45555666666665552 111112
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH------HhCC---CCCCh-----
Q 047146 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM------QGLG---LKPDD----- 325 (608)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~~----- 325 (608)
..|..........|. ..+..+ +. ...+++..|..++.++ .+.. ++|+.
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~---------------l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKM---------------IE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHH---------------HH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHH---------------HH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 222222221111110 001111 10 1234566666666552 1111 23431
Q ss_pred ---HHHHHHHHHHhc----cCCh----HHHHHHHHHHHHcCCCCchhHHHHHHHHhHh-------cCCHH-------HHH
Q 047146 326 ---FTLVCVLNSCAN----IGWL----ELGKWVHTYLDKNHINTDGFIGNALVDMYAK-------CGRID-------QAF 380 (608)
Q Consensus 326 ---~t~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~ 380 (608)
..|...+..... .++. ..+..+++.++... +.++.+|..++..+.+ .|+++ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 233333322221 1232 36667788777653 4567788888888775 68887 899
Q ss_pred HHHhhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 381 GVFRSMKC---R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE--VTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 381 ~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.+|++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|.++|++..+
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99997763 3 578899999999999999999999999998 46653 4788888888899999999999999987
Q ss_pred hcCCCC-ChhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-
Q 047146 455 VYNLQP-QTEHYGCMVDL-FGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG- 529 (608)
Q Consensus 455 ~~~~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~- 529 (608)
. .| +...|...+.. +...|+.++|..+|+.. ...| +...|..++..+.+.|+.++|..+++++++..|.++.
T Consensus 385 ~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 385 D---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp C---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred c---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 2 33 33333333222 34689999999999987 4345 6789999999999999999999999999998877665
Q ss_pred ---hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 530 ---AYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 530 ---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
.|...+......|+.+.+.++.+++.+.-
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78888888899999999999999987644
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.4e-17 Score=160.03 Aligned_cols=279 Identities=10% Similarity=-0.036 Sum_probs=223.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047146 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368 (608)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 368 (608)
+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+...|+++.|..++..+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44556666666777777777777777776643 3334455556666677777777777777776654 345666778888
Q ss_pred HhHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHH
Q 047146 369 MYAKCG-RIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444 (608)
Q Consensus 369 ~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 444 (608)
.|...| ++++|...|++... .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 899999 99999999987653 356789999999999999999999999999853 2245677778999999999999
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHHcCCHHHH
Q 047146 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PL----------VPDAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~~~a 513 (608)
|.+.++.+.+ ..+.+...+..+...+.+.|++++|...++++ .. ..+..+|..+...+...|++++|
T Consensus 178 A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999987 23446788999999999999999999999887 11 23467899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHH
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 593 (608)
...++++.+..|+++..+..++.+|.+.|++++|.+.+++..+ ..|+++..+..
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~ 309 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--------------------------LRRDDTFSVTM 309 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--------------------------TCSCCHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--------------------------cCCCchHHHHH
Confidence 9999999999999999999999999999999999999998763 34667777777
Q ss_pred HHHHH
Q 047146 594 LDEIM 598 (608)
Q Consensus 594 l~~~~ 598 (608)
+....
T Consensus 310 l~~~~ 314 (330)
T 3hym_B 310 LGHCI 314 (330)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1e-17 Score=163.35 Aligned_cols=355 Identities=11% Similarity=0.051 Sum_probs=160.9
Q ss_pred HhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHH
Q 047146 163 AVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242 (608)
Q Consensus 163 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 242 (608)
-+.|++++|.+.++++ . ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~----~--~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC----N--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC----C--ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3678899999999884 2 3348999999999999999999999653 57778999999999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047146 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322 (608)
Q Consensus 243 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 322 (608)
..++..++. .|++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 82 KYLQMARKK----ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp -------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHh----CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 988877764 22677888999999999999998888764 67779999999999999999999999877
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 047146 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402 (608)
Q Consensus 323 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 402 (608)
..|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQ 218 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHH
Confidence 36888999999999999999888877 368888999999999999999987777655 44444556888999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cccHHHHHHHHHHhHhhcCCCC------ChhHHHHHHHHHHh
Q 047146 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH--AGLVEEGCKHFLDMSRVYNLQP------QTEHYGCMVDLFGR 474 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~ 474 (608)
+.|++++|+.+++...... +-....|+-+.-++++ -+++.+..+.|..- .+++| +...|..++-.|..
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887642 2233456655555554 45566665555432 35555 46779999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----------chHHHHHHHHHhCCC
Q 047146 475 AGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD----------GAYILMTNIYSSKNR 543 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----------~~~~~l~~~~~~~g~ 543 (608)
.++++.|...+-+- +..-+...|.-++ .+..+.+---+...-.++..|... --....+..+.+.|.
T Consensus 295 ~~e~d~A~~tm~~h~~~a~~~~~f~~~~---~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~ 371 (449)
T 1b89_A 295 YEEYDNAIITMMNHPTDAWKEGQFKDII---TKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ 371 (449)
T ss_dssp TTCHHHHHHHHHHSTTTTCCHHHHHHHH---HHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred hchHHHHHHHHHhCChhhhhhHHHHHHH---hchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCC
Confidence 99999998866555 2222333333332 333333322222222222222210 012344455556666
Q ss_pred hHHHHHHHHHHHhCCC
Q 047146 544 WKEALKLRKKMKERKV 559 (608)
Q Consensus 544 ~~~A~~~~~~m~~~~~ 559 (608)
+.-+..+++.+...+.
T Consensus 372 l~l~~~yl~~v~~~n~ 387 (449)
T 1b89_A 372 LPLVKPYLRSVQNHNN 387 (449)
T ss_dssp TTTTHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHhhH
Confidence 6666666655555443
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=5e-16 Score=160.79 Aligned_cols=366 Identities=9% Similarity=-0.034 Sum_probs=276.7
Q ss_pred cHhHHHHHHHHHHh----cCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCH
Q 047146 151 NVYVFNTLMRLYAV----CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK----MDYPTEAILSFFDMCQANLRPDG 222 (608)
Q Consensus 151 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~ 222 (608)
+......|-..|.. .+++++|...|+...+. .+...+..|...|.. .+++++|++.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55566666666666 67788888877764332 355667777777777 778888888888877654 45
Q ss_pred hHHHHHHHHhhc----cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHh----cCChHHHHHHHccCC-CCChhhH
Q 047146 223 MILVIVLSACSK----LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK----CGNIPSARKVFDEMP-VKNVVSW 293 (608)
Q Consensus 223 ~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~ 293 (608)
..+..+...+.. .+++++|...++...+.+ +...+..|..+|.. .++.++|.+.|++.. ..+...+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 186 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 556666666666 678888888888887763 56677777777776 678888888887765 3456677
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchhHHHH
Q 047146 294 NSMIAGLTH----RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN----IGWLELGKWVHTYLDKNHINTDGFIGNA 365 (608)
Q Consensus 294 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 365 (608)
..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|..++....+.+ +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 777777777 788888888888887764 45566666666664 678888888888887764 3455666
Q ss_pred HHHHhHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 366 LVDMYAK----CGRIDQAFGVFRSMKC-RDVYSYTAMIVGLAIH-----GKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 366 li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
+..+|.. .++.++|.+.|++..+ .+...+..+...|... +++++|+..|++..+.| +...+..+...
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI 337 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 7777777 8899999999988764 4667788888888887 89999999999998864 44566677777
Q ss_pred Hhccc---cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--
Q 047146 436 CSHAG---LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AGLIREALDLIKSMPLVPDAFVWGALLGACKI-- 506 (608)
Q Consensus 436 ~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-- 506 (608)
+...| +.++|.++|++..+. .+...+..|..+|.. .+++++|.+.|++.-...++..+..+...|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 76655 889999999999872 467788889999988 89999999999988223367788888888887
Q ss_pred --cCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 047146 507 --HAKVELAEIVMENLVRFEPE---GDGAYILMTNIYSS 540 (608)
Q Consensus 507 --~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 540 (608)
.++.++|...++++.+.+|+ ++.....++.++..
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999999854 66666666666554
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=1.8e-15 Score=163.99 Aligned_cols=417 Identities=11% Similarity=0.089 Sum_probs=305.2
Q ss_pred CCCCcchHHHHHHHHHcCCCccHHHHHHHHHHCCC--CCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhC--cCCcHhH
Q 047146 79 QNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGL--LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA--LLSNVYV 154 (608)
Q Consensus 79 ~~~~~~~~~~li~~~~~~~~~~~~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~ 154 (608)
.+.|...|+.++.- .+... -++.+.-....+ .-|+.-.....+++...|.+.++.++++.++-.+ +..+...
T Consensus 949 ~r~d~~lW~~vl~~---~n~~R-R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~L 1024 (1630)
T 1xi4_A 949 RRKDPELWGSVLLE---SNPYR-RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNL 1024 (1630)
T ss_pred HhcCHHHHHHHhcC---CcHHH-HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHH
Confidence 34666677766621 11111 333333222111 2244445778889999999999999999988432 1134466
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc
Q 047146 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234 (608)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 234 (608)
.+.|+.+..+. +..+..+..+... .....-+...+...|.+++|..+|++.. -.......++. .
T Consensus 1025 qnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~ 1088 (1630)
T 1xi4_A 1025 QNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---H 1088 (1630)
T ss_pred HHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---H
Confidence 77788777776 5566666655522 1124557788899999999999999962 11222233332 6
Q ss_pred cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047146 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314 (608)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 314 (608)
.+++++|.++.+.+ . +..+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|++.|.
T Consensus 1089 i~nldrAiE~Aerv-----n---~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC-----N---EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HhhHHHHHHHHHhc-----C---CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 78899988888754 2 6788999999999999999999999775 677888999999999999999999999
Q ss_pred HHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHH
Q 047146 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394 (608)
Q Consensus 315 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 394 (608)
...+.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...|++++|..+|... ..|
T Consensus 1159 mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny 1224 (1630)
T 1xi4_A 1159 MARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 1224 (1630)
T ss_pred HHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHH
Confidence 877754 44333445888999998888654443 1 345556667999999999999999999986 489
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 474 (608)
..+...|.+.|++++|++.+++. -+..+|..+..+|...|++..|...... +..+...+..++..|.+
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHH
Confidence 99999999999999999999976 3568999999999999999999876553 23456677899999999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCC-----CCCchHHHHHHHHHhCCChH
Q 047146 475 AGLIREALDLIKSM-PLVPD-AFVWGALLGACK--IHAKVELAEIVMENLVRFEP-----EGDGAYILMTNIYSSKNRWK 545 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~ 545 (608)
.|.+++|+++++.. +..|. ...|.-+..++. +.++..++.+.|..-....| .+...|..++.+|.+.|+++
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 99999999999877 65553 335545555544 44555666666665555444 56678999999999999999
Q ss_pred HHHHHH
Q 047146 546 EALKLR 551 (608)
Q Consensus 546 ~A~~~~ 551 (608)
.|...+
T Consensus 1373 nA~~tm 1378 (1630)
T 1xi4_A 1373 NAIITM 1378 (1630)
T ss_pred HHHHHH
Confidence 998543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1.6e-17 Score=165.28 Aligned_cols=278 Identities=10% Similarity=-0.038 Sum_probs=210.6
Q ss_pred hcCChHHHHH-HHccCC---CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChH
Q 047146 271 KCGNIPSARK-VFDEMP---VK----NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342 (608)
Q Consensus 271 ~~g~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 342 (608)
-.|++++|.+ .|++.. +. +...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466777776 666443 11 24557777777788888888888888877753 445567777777777888888
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHH---------------HHHHHHHc
Q 047146 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTA---------------MIVGLAIH 404 (608)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~ 404 (608)
.|...+..+.+.. +.+..++..+..+|...|++++|.+.|+++.. | +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888887777665 34566777788888888888888888876642 2 2222211 23334488
Q ss_pred CChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047146 405 GKAWKALDIFSEMSQVGIEPD---EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 481 (608)
|++++|+..++++.+. .|+ ..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|
T Consensus 195 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999985 444 678999999999999999999999999873 233578899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhCCChHHHH
Q 047146 482 LDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG-----------DGAYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 482 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 548 (608)
++.++++ ...| +..++..+...+...|++++|...++++.+..|++ ..+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999988 4444 67889999999999999999999999999998887 678999999999999999999
Q ss_pred HHHHHH
Q 047146 549 KLRKKM 554 (608)
Q Consensus 549 ~~~~~m 554 (608)
.++++-
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 988643
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.1e-14 Score=158.06 Aligned_cols=351 Identities=14% Similarity=0.071 Sum_probs=271.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhcccCCCCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA--QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
.--+..++.|+..|...+|.++++....... ..+...-|.++.+..+. +..+..++.++... .....+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~ 1057 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIAN 1057 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHH
Confidence 3345666777788888888888887542211 12334456666666666 45666666655531 11333667
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHH
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (608)
.|...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|+
T Consensus 1058 Iai~lglyEEAf~IYkKa~~-------~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV-------NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC-------HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 78889999999999988631 2333333332 7888999999998774 4678999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 390 (608)
+.|.+. -|...|..++.+|.+.|+++++.+++...++.. +++.+.+.++.+|++.+++++...+. ..++
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPN 1194 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCC
Confidence 999663 467788889999999999999999999888765 33334456999999999999755553 4567
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCF 1258 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHH
Confidence 778888999999999999999999985 48999999999999999999998877 34588999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC--CChHHHH
Q 047146 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK--NRWKEAL 548 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~ 548 (608)
+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+.+++.....|..|+.+|++- ++.-++.
T Consensus 1259 acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999877654 446667778999999999999999999999999999999998998888865 3455555
Q ss_pred HHHH
Q 047146 549 KLRK 552 (608)
Q Consensus 549 ~~~~ 552 (608)
++|.
T Consensus 1337 k~f~ 1340 (1630)
T 1xi4_A 1337 ELFW 1340 (1630)
T ss_pred HHHH
Confidence 5554
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=7.1e-17 Score=154.19 Aligned_cols=268 Identities=9% Similarity=-0.039 Sum_probs=188.0
Q ss_pred HhcCChHHHHHHHccCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHH
Q 047146 270 LKCGNIPSARKVFDEMPVKNV----VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345 (608)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 345 (608)
...|+++.|+..++.....++ .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344555555555554432221 12233445555555555555544321 2344445555555555555555665
Q ss_pred HHHHHHHHcCC-CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047146 346 WVHTYLDKNHI-NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424 (608)
Q Consensus 346 ~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 424 (608)
+.++.+...+. +.+...+..+..+|...|++++|++.+++ ..+...+..++..|.+.|++++|.+.|+++.+. .|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 55555555443 23445556677889999999999999998 567889999999999999999999999999985 56
Q ss_pred CHHHH---HHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 047146 425 DEVTF---VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGA 499 (608)
Q Consensus 425 ~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 499 (608)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| ++.++..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 64321 12334445669999999999999984 4557889999999999999999999999997 4455 7778999
Q ss_pred HHHHHHHcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHH
Q 047146 500 LLGACKIHAKVEL-AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551 (608)
Q Consensus 500 l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 551 (608)
++..+...|+.++ +.++++++.+..|+++.+ .+...+.+.++++..-|
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 9999999999875 678999999999999743 34556666666665443
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=7.5e-15 Score=151.92 Aligned_cols=352 Identities=11% Similarity=-0.002 Sum_probs=295.5
Q ss_pred CCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc----cCCchHHHHHHHHHHHccCCCC
Q 047146 185 RDLVSWTTLIQAYVK----MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK----LGDLSLGIKIHRYITDNHFNLS 256 (608)
Q Consensus 185 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 256 (608)
.++.++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.++...+.+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 366677777777877 899999999999998764 56677788888887 899999999999998874
Q ss_pred CchHHHHHHHHHHHh----cCChHHHHHHHccCCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChHH
Q 047146 257 PDVFIHNALIDMYLK----CGNIPSARKVFDEMPV-KNVVSWNSMIAGLTH----RGQFKEALDIFRRMQGLGLKPDDFT 327 (608)
Q Consensus 257 p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 327 (608)
+...+..|..+|.. .+++++|.+.|++... .+...+..+...|.. .+++++|++.|++..+.| +...
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 67778889999988 8899999999998763 466778888888887 789999999999998875 5677
Q ss_pred HHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHhhcCC-CChhHHHHHH
Q 047146 328 LVCVLNSCAN----IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK----CGRIDQAFGVFRSMKC-RDVYSYTAMI 398 (608)
Q Consensus 328 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 398 (608)
+..+...+.. .++.++|...+....+.+ +...+..+..+|.. .+++++|...|++..+ .+...+..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7778888877 899999999999998875 45677788888886 7899999999998654 5677788888
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----ccHHHHHHHHHHhHhhcCCCCChhHHHHHH
Q 047146 399 VGLAI----HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA-----GLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469 (608)
Q Consensus 399 ~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 469 (608)
..|.. .+++++|+.+|++..+.| +...+..+...+... +++++|...+++..+. .+...+..+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHH
Confidence 88888 899999999999998764 455667777777776 8999999999999872 3556778888
Q ss_pred HHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh--
Q 047146 470 DLFGRAG---LIREALDLIKSMPLVPDAFVWGALLGACKI----HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS-- 540 (608)
Q Consensus 470 ~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 540 (608)
..|.+.| +.++|++.|++.-...++..+..+...|.. .+++++|...++++.+.+ ++..+..|+.+|.+
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888867 789999999988223578888889999988 899999999999998865 56789999999998
Q ss_pred --CCChHHHHHHHHHHHhCCC
Q 047146 541 --KNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 541 --~g~~~~A~~~~~~m~~~~~ 559 (608)
.+++++|...+++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998774
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=7.2e-17 Score=157.35 Aligned_cols=279 Identities=12% Similarity=0.055 Sum_probs=121.6
Q ss_pred HccCCchHHHh---hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHH
Q 047146 66 SLSRGNEIENL---SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141 (608)
Q Consensus 66 ~~~g~~~~A~~---~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 141 (608)
-+.|++++|.+ ..++| .+|..+..++.+.|+.++ ++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46788888888 55444 489999999999999999 9999653 588899999999999999999999888
Q ss_pred HHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 047146 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221 (608)
Q Consensus 142 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 221 (608)
..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTTC-------C----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 77774 45678899999999999999999988864 67779999999999999999999999987
Q ss_pred HhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHH
Q 047146 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301 (608)
Q Consensus 222 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 301 (608)
..|..+..++.+.|+++.|.+.+..+ . ++.+|..++.+|...|+++.|......+. .++.....++..|.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA-----~---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA-----N---STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQ 218 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH-----T---CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc-----C---CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHH
Confidence 47889999999999999999999887 1 78899999999999999999988877765 44444556888999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc--CChHHHHHHHHHHHHcCCCC------chhHHHHHHHHhHhc
Q 047146 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI--GWLELGKWVHTYLDKNHINT------DGFIGNALVDMYAKC 373 (608)
Q Consensus 302 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~ 373 (608)
+.|.+++|+.+++...... +-....|+-+--.+++- +.+.+..+.|. .+.++++ +...|..++-.|...
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887643 33344444444444432 23333333222 1122222 244555556666666
Q ss_pred CCHHHHHHH
Q 047146 374 GRIDQAFGV 382 (608)
Q Consensus 374 g~~~~A~~~ 382 (608)
++++.|..+
T Consensus 296 ~e~d~A~~t 304 (449)
T 1b89_A 296 EEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHH
T ss_pred chHHHHHHH
Confidence 666655543
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=4.3e-15 Score=155.35 Aligned_cols=412 Identities=10% Similarity=0.053 Sum_probs=287.0
Q ss_pred CCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHH
Q 047146 79 QNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157 (608)
Q Consensus 79 ~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (608)
.+.|..+|..++. +.+.|+.+. ..+|+++.+.- +-+...|...+..+.+.|+++.|..+|+.+++.. |+...|..
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 4567889999998 477899999 99999998752 3355578899999999999999999999998864 67777877
Q ss_pred HHHH-HHhcCCHHHHHH----HhcccCCC-CCC-CCcchHHHHHHHHHh---------CCCchHHHHHHHHHHHCCCCCC
Q 047146 158 LMRL-YAVCGLIKAVHK----LFHFRQHP-QAQ-RDLVSWTTLIQAYVK---------MDYPTEAILSFFDMCQANLRPD 221 (608)
Q Consensus 158 li~~-~~~~g~~~~A~~----~~~~m~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~ 221 (608)
.+.. ....|+.++|.+ +|+..... +.. ++...|...+....+ .|+++.|..+|++..+. |+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~ 161 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PM 161 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CC
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hh
Confidence 7753 345678777665 67653221 222 355678888876655 68899999999999873 33
Q ss_pred H---hHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHH----------HccCC--
Q 047146 222 G---MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV----------FDEMP-- 286 (608)
Q Consensus 222 ~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----------~~~~~-- 286 (608)
. ..|..........|. ..+..++. .+.++++.|..+ +++..
T Consensus 162 ~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~ 217 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINI-HLAKKMIE-----------------------DRSRDYMNARRVAKEYETVMKGLDRNAPS 217 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred hhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------------HhhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 2 233322221111110 11111110 011223333332 22211
Q ss_pred -CCC--------hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCChHHHHHHHHHHhc-------cCChH
Q 047146 287 -VKN--------VVSWNSMIAGLTHR----GQF----KEALDIFRRMQGLGLKPDDFTLVCVLNSCAN-------IGWLE 342 (608)
Q Consensus 287 -~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~ 342 (608)
.|+ ...|...+...... ++. +++..+|++..... +-+...|......+.+ .|+++
T Consensus 218 ~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp CCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 122 23555555433222 222 37778888887752 3456667666666664 68877
Q ss_pred -------HHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-Ch-hHHHHHHHHHHHcCChHHHH
Q 047146 343 -------LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-DV-YSYTAMIVGLAIHGKAWKAL 411 (608)
Q Consensus 343 -------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~~~~~~A~ 411 (608)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|++..+ | +. ..|...+..+.+.|+.++|.
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHH
Confidence 8889999888643455688889999999999999999999998753 3 33 48999999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHH-HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 047146 412 DIFSEMSQVGIEPD-EVTFVGVLSA-CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM- 488 (608)
Q Consensus 412 ~~~~~m~~~g~~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 488 (608)
.+|++..+. .|+ ...+...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.
T Consensus 377 ~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 377 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 999999885 343 3333332222 335899999999999998742 335788999999999999999999999987
Q ss_pred ---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 489 ---PLVPD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 489 ---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
+..|+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 453 ~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 453 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22332 458888888889999999999999999998885
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=5.1e-17 Score=161.47 Aligned_cols=261 Identities=8% Similarity=-0.095 Sum_probs=210.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047146 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368 (608)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 368 (608)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888889999999999999888764 4567788888888888999999999998888765 345778888999
Q ss_pred HhHhcCCHHHHHHHHhhcCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 047146 369 MYAKCGRIDQAFGVFRSMKCRD-------------VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE-PDEVTFVGVLS 434 (608)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~ 434 (608)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|+..++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999998876311 223345578899999999999999999985322 15778999999
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 512 (608)
.+...|++++|.+.++++.+. .+.+..+|..+..+|.+.|++++|++.++++ ...| +..+|..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999873 3346789999999999999999999999988 4455 58899999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 513 AEIVMENLVRFEPE------------GDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 513 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
|...+++++++.|+ +...|..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998776 356899999999999999998887765
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.1e-15 Score=157.67 Aligned_cols=388 Identities=9% Similarity=-0.084 Sum_probs=190.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhcccCCC--------CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-----C-
Q 047146 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHP--------QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA-----N- 217 (608)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~- 217 (608)
...||.|...|...|+.++|++.|++..+. .......+|+.+..+|...|++++|+..+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666666666666666666542110 01112345555666666666666666666554331 0
Q ss_pred CCC-CHhHHHHHHHHhhc--cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHH---HhcCChHHHHHHHccCC---CC
Q 047146 218 LRP-DGMILVIVLSACSK--LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY---LKCGNIPSARKVFDEMP---VK 288 (608)
Q Consensus 218 ~~p-~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~~~---~~ 288 (608)
..+ ...++.....++.. .+++++|...|+.+++..+. +...+..+..++ ...++.++|++.|++.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~---~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK---NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 011 12233333333322 23455666666665555432 333333333332 23344444554444332 22
Q ss_pred ChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHH
Q 047146 289 NVVSWNSMIAGLTH----RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364 (608)
Q Consensus 289 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (608)
+...+..+...+.. .+++++|.+.+++..... +.+...+..+...+...|+++.|...+..+.+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 33334333333322 234455555555554432 2333444445555555555555555555554433 22233333
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHH
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~ 443 (608)
.+..+|...+....+. .. ..........+.+++|...+++..+. .| +..++..+...+...|+++
T Consensus 286 ~lg~~y~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNL-----RE-------NGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhhH-----HH-------HHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHH
Confidence 3333332211100000 00 00000011123457788888888774 44 3457888888999999999
Q ss_pred HHHHHHHHhHhhcCCCCCh--hHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047146 444 EGCKHFLDMSRVYNLQPQT--EHYGCMVD-LFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMEN 519 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 519 (608)
+|...|+++.+ ....+.. ..+..+.. .+...|+.++|+..+++. .+.|+...+... .+.+..++++
T Consensus 352 ~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~ 421 (472)
T 4g1t_A 352 EAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKM 421 (472)
T ss_dssp HHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHH
Confidence 99999999877 2222221 12333333 234678999999999887 666765443322 3445677888
Q ss_pred HHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEE
Q 047146 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568 (608)
Q Consensus 520 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 568 (608)
.++.+|+++.+|..|+.+|...|++++|++.+++..+.+.....+.+|+
T Consensus 422 ~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 422 RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 8899999999999999999999999999999999998776655555554
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.6e-16 Score=157.99 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=95.1
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHH
Q 047146 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLT 301 (608)
Q Consensus 225 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 301 (608)
+..+...+...|++++|...++.+++..+. +..++..+..+|.+.|++++|.+.|+++. +.+..+|..+...+.
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 333444444444444444444444443222 33444444444444444444444444432 223445555555556
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChH-HHHH---------------HHHHHhccCChHHHHHHHHHHHHcCCCC-chhHHH
Q 047146 302 HRGQFKEALDIFRRMQGLGLKPDDF-TLVC---------------VLNSCANIGWLELGKWVHTYLDKNHINT-DGFIGN 364 (608)
Q Consensus 302 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 364 (608)
..|++++|+..++++.... |+.. .+.. .+..+...|+++.|...+..+.+..... +..++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 6666666666666655532 2211 1110 1111123444444444444444332111 233444
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccc
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAG 440 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 440 (608)
.+..+|.+.|++++|...|++.. ..+...|..+...+...|++++|+..|+++.+. .| +..++..+..++.+.|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCC
Confidence 44444444444444444444332 122334444444444444444444444444442 22 2334444444444444
Q ss_pred cHHHHHHHHHHhH
Q 047146 441 LVEEGCKHFLDMS 453 (608)
Q Consensus 441 ~~~~a~~~~~~~~ 453 (608)
++++|...|+.+.
T Consensus 300 ~~~~A~~~~~~al 312 (368)
T 1fch_A 300 AHREAVEHFLEAL 312 (368)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=6.5e-16 Score=147.52 Aligned_cols=245 Identities=9% Similarity=0.021 Sum_probs=201.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCh--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDD--FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 374 (608)
++-....|+++.|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999999876543 4543 3556678899999999999875543 24567778888999999999
Q ss_pred CHHHHHHHHhhcC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 047146 375 RIDQAFGVFRSMK----CR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 375 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 556777788999999999999999987 456778899999999999999999999
Q ss_pred HHhHhhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 450 LDMSRVYNLQPQTEH---YGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 450 ~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
+++.+. .|+... ...++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999883 355321 123445555669999999999998 333478899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCChHH-HHHHHHHHHh
Q 047146 525 PEGDGAYILMTNIYSSKNRWKE-ALKLRKKMKE 556 (608)
Q Consensus 525 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 556 (608)
|+++.++..++.++...|+.++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999976 5789998874
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=3.5e-16 Score=152.56 Aligned_cols=258 Identities=9% Similarity=-0.059 Sum_probs=181.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047146 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372 (608)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 372 (608)
|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+.+.. +.+..++..+..+|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 4444445555555555555555554432 2233444444555555555555555555554442 2234455555666666
Q ss_pred cCCHHHHHHHHhhcCC--C-ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047146 373 CGRIDQAFGVFRSMKC--R-DVYSYTAM--------------IV-GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434 (608)
Q Consensus 373 ~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 434 (608)
.|++++|.+.++++.. | +...+..+ .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 6666666666655432 1 12222222 22 3667788999999999998853 335678888999
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 512 (608)
.+...|++++|.+.++.+.+. .+.+...+..+...+...|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999873 2345788999999999999999999999987 3344 67889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 513 AEIVMENLVRFEPE------------GDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 513 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
|...++++.+..|+ ++..|..++.+|.+.|++++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999998 67899999999999999999999987543
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=4.9e-16 Score=154.34 Aligned_cols=274 Identities=11% Similarity=-0.010 Sum_probs=172.1
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHH
Q 047146 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263 (608)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~ 263 (608)
..+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+++..+. +..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 137 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN---NLKALM 137 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHH
Confidence 3456668888888888888888888888887653 235667777777888888888888888887776433 566677
Q ss_pred HHHHHHHhcCChHHHHHHHccCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC
Q 047146 264 ALIDMYLKCGNIPSARKVFDEMPVKN---VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340 (608)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 340 (608)
.+..+|...|++++|...|+++...+ ...+..+. .....+..+...+...|+
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~ 192 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSV 192 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------------------------------------CCHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhh
Confidence 77777777777777776666654211 11111110 001112222334444444
Q ss_pred hHHHHHHHHHHHHcCCC-CchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 047146 341 LELGKWVHTYLDKNHIN-TDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSE 416 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 416 (608)
++.|...+..+.+.... .+..++..+..+|...|++++|.+.|++.. ..+..+|..+..+|...|++++|+..|++
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444444443321 145555666667777777777777776654 23566777778888888888888888888
Q ss_pred HHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCC----------CCChhHHHHHHHHHHhcCCHHHHHHHH
Q 047146 417 MSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL----------QPQTEHYGCMVDLFGRAGLIREALDLI 485 (608)
Q Consensus 417 m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~p~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (608)
+.+. .|+ ..++..+..++...|++++|...|+++.+...- ..+...|..+..++...|+.+.+.++.
T Consensus 273 al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 273 ALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 7774 443 567777778888888888888888877662111 012567888888888888888888877
Q ss_pred HhC
Q 047146 486 KSM 488 (608)
Q Consensus 486 ~~~ 488 (608)
++-
T Consensus 351 ~~~ 353 (365)
T 4eqf_A 351 LGD 353 (365)
T ss_dssp TTC
T ss_pred Hhh
Confidence 654
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=2.5e-17 Score=173.00 Aligned_cols=149 Identities=18% Similarity=0.240 Sum_probs=125.9
Q ss_pred eeHHHHHHHHhccCCcHHHHHHHHHHH---HhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHH
Q 047146 118 YTLPYVLKACWQSQSLRVGQQVHAYSM---KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194 (608)
Q Consensus 118 ~t~~~ll~~~~~~~~~~~a~~~~~~~~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 194 (608)
.||+++|.+|++.|++++|..+|..|. +.|+.||+.+||+||++|++.|++++|.++|++|...|..||++|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 489999999999999999999998875 45889999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCc-hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCc------hHHHHHHHH
Q 047146 195 QAYVKMDYP-TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD------VFIHNALID 267 (608)
Q Consensus 195 ~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~------~~~~~~li~ 267 (608)
.++++.|+. ++|.++|++|.+.|+.||..||++++..+.+ ..+++.+.+..++..|+ +.+...|.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR-------~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR-------ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH-------HHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH-------HHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 999999985 7889999999999999999999988865433 34555565555555544 455566777
Q ss_pred HHHhcC
Q 047146 268 MYLKCG 273 (608)
Q Consensus 268 ~~~~~g 273 (608)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=6e-15 Score=152.01 Aligned_cols=385 Identities=9% Similarity=-0.020 Sum_probs=238.5
Q ss_pred CceeHHHHHHHHhccCCcHHHHHHHHHHHHh-----C--cCC-cHhHHHHHHHHHHhcCCHHHHHHHhcccCCC-----C
Q 047146 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKT-----A--LLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP-----Q 182 (608)
Q Consensus 116 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 182 (608)
....|+.+-..+...|+.++|.+.+...++. + ..| ...+|+.+...|...|++++|...+++.... .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888889999999999999987653 1 122 3467899999999999999999999864321 0
Q ss_pred -CC-CCcchHHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCH-hHHHHHHHH---hhccCCchHHHHHHHHHHHccCC
Q 047146 183 -AQ-RDLVSWTTLIQAYVK--MDYPTEAILSFFDMCQANLRPDG-MILVIVLSA---CSKLGDLSLGIKIHRYITDNHFN 254 (608)
Q Consensus 183 -~~-~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 254 (608)
.. ....+++.+..++.. .+++++|++.|++..+. .|+. ..+..+..+ +...++.++|.+.++..++..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 11 123445555555544 45799999999999874 4543 344444333 45678889999999999988644
Q ss_pred CCCchHHHHHHHHHHHh----cCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hH
Q 047146 255 LSPDVFIHNALIDMYLK----CGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD-DF 326 (608)
Q Consensus 255 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 326 (608)
+..++..+...+.. .|++++|.+.+++.. +.+..++..+...|...|++++|+..+++..+. .|+ ..
T Consensus 208 ---~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 208 ---NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp ---CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred ---chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 56666666655554 467888999998764 456778999999999999999999999999886 344 44
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHH
Q 047146 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAI 403 (608)
Q Consensus 327 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 403 (608)
++..+...+...+.... ... ...........+..+.|...|+... ..+...|..+...|..
T Consensus 283 ~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 55555444432111100 000 0011111112234567777776654 3456788889999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIEPDEV--TFVGVLS-ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (608)
.|++++|+..|++..+....|... .+..+.. .....|+.++|+..|.+..+ +.|+....... ...
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~ 414 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDK 414 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHH
Confidence 999999999999998854333221 2333332 24577999999999999876 45654332222 223
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 481 ALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 481 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
+.++++.. ...| +..+|..+...+...|++++|.+.++++++++|.+|.++..++
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33444433 2234 6778999999999999999999999999999999887776654
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=1e-14 Score=142.13 Aligned_cols=95 Identities=17% Similarity=0.001 Sum_probs=51.7
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHH
Q 047146 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265 (608)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 265 (608)
+...|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|+++.|...++.+.+..+. +..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---CHHHHHHH
Confidence 44455666666667777777777777665542 224445555556666666666666666666655322 33444444
Q ss_pred HHHHHhcCChHHHHHHHcc
Q 047146 266 IDMYLKCGNIPSARKVFDE 284 (608)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~ 284 (608)
...|...|++++|.+.|++
T Consensus 96 a~~~~~~~~~~~A~~~~~~ 114 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRA 114 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 4444444444444444433
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.6e-14 Score=133.00 Aligned_cols=219 Identities=14% Similarity=0.059 Sum_probs=164.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047146 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371 (608)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 371 (608)
.|..+...+...|++++|+..|++..+.. .+...+ ..+..+|.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-----------------------------------~~~~~~~~ 49 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYL-----------------------------------NNRAAAEY 49 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHH-----------------------------------HHHHHHHH
Confidence 45555556666666666666666655543 444444 44555555
Q ss_pred hcCCHHHHHHHHhhcCC--C----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 047146 372 KCGRIDQAFGVFRSMKC--R----D----VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 441 (608)
..|++++|.+.|++..+ | + ...|..+...+...|++++|+..|++.... .|+. ..+...|+
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~ 120 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRN 120 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhH
Confidence 55555555555554432 1 1 466777888888888888998888888873 5553 34666788
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047146 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMEN 519 (608)
Q Consensus 442 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 519 (608)
+++|...++.+.. ..+.+...+..+...+...|++++|.+.++++ ...| +..+|..+...+...|++++|...+++
T Consensus 121 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 121 AEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999998876 22235677888999999999999999999988 3334 678899999999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 520 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+.+..|+++..|..++.+|.+.|++++|...+++..+..
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999987643
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=164.69 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=104.9
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-------CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 429 (608)
..-..+||+||++|++.|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445678999999999999999999987653 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccc-HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047146 430 VGVLSACSHAGL-VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484 (608)
Q Consensus 430 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 484 (608)
+++|.++++.|+ .++|.++|++|.+ .|+.||..+|++++..+.+.+-++.+.++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999887 5788899999988 59999999999888777665444443333
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=1.9e-14 Score=131.15 Aligned_cols=194 Identities=15% Similarity=0.036 Sum_probs=157.0
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGV 432 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l 432 (608)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666778888899999999999999997653 46688899999999999999999999999984 564 5688888
Q ss_pred HHHHhcc-----------ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 047146 433 LSACSHA-----------GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGA 499 (608)
Q Consensus 433 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 499 (608)
..++... |++++|...+++..+ +.| +...+..+..+|...|++++|++.|++. .+..+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 999999999999987 345 5788899999999999999999999987 22278889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+..++...|++++|...++++++..|+++..+..++.++.+.|++++|++.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998753
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4.8e-14 Score=132.13 Aligned_cols=237 Identities=12% Similarity=0.031 Sum_probs=167.0
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCChHHHHHHHH
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMP--VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG--LKPDDFTLVCVLN 333 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~ 333 (608)
....+..+...+...|++++|...|++.. ..+...|..+..++...|++++|+..+++..+.. ..|+...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------ 77 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV------ 77 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH------
Confidence 45678889999999999999999998764 2677889999999999999999999999987642 1112100
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHH
Q 047146 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKAL 411 (608)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~ 411 (608)
...++..+..+|...|++++|...|++... |+ ...+...|++++|.
T Consensus 78 -------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 78 -------------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKEL 125 (258)
T ss_dssp -------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHH
Confidence 022334444555555555555555554432 22 12355556677777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 047146 412 DIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-P 489 (608)
Q Consensus 412 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 489 (608)
..++++... .|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|++.++++ .
T Consensus 126 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 126 KKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777777763 443 346777777778888888888888887762 2335677778888888888888888888777 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCCchHHHHHH
Q 047146 490 LVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE------PEGDGAYILMTN 536 (608)
Q Consensus 490 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 536 (608)
..| +...|..+...+...|++++|...++++.+.. |++...+..+..
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 334 57778888888888999999999999888887 766655555443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=1.5e-13 Score=130.26 Aligned_cols=241 Identities=10% Similarity=-0.086 Sum_probs=184.9
Q ss_pred hcCChhHHHHHHHHHHhCCCC---CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047146 302 HRGQFKEALDIFRRMQGLGLK---PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378 (608)
Q Consensus 302 ~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 378 (608)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346777888888887775321 134566677777778888888888888777764 3456777888889999999999
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhh
Q 047146 379 AFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455 (608)
Q Consensus 379 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 455 (608)
|.+.|++..+ .+...|..+...|...|++++|...|+++.+ ..|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999987753 4678899999999999999999999999988 4666655555566667789999999999888773
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 456 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
.+++...+. ++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++.+..|++..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 334444444 777788888899999999887 43332 578888899999999999999999999999998754
Q ss_pred hHHHHHHHHHhCCChHHHHHHH
Q 047146 530 AYILMTNIYSSKNRWKEALKLR 551 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~ 551 (608)
. .+.++...|++++|++.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 366788889999988776
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=2.7e-13 Score=128.33 Aligned_cols=176 Identities=10% Similarity=-0.038 Sum_probs=97.8
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 047146 363 GNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSH 438 (608)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 438 (608)
+..+..+|...|++++|.+.|++.. ..+...|..+...|...|++++|+..|++..+. .| +...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHH
Confidence 4445555555555555555555443 123445555555566666666666666555543 33 23344444423333
Q ss_pred cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHH
Q 047146 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL---IREALDLIKSM----PLVPD------AFVWGALLGACK 505 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~ 505 (608)
.+++++|.+.|+.+.+. .+.+...+..+..++...|+ +++|...++++ ...|+ ..+|..+...+.
T Consensus 155 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 34666666666666552 12234555555555655555 55555555444 11233 246667778888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 542 (608)
..|++++|...++++.+++|+++.++..+..+....+
T Consensus 233 ~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 8999999999999999999998877777666555443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=4.6e-12 Score=128.97 Aligned_cols=378 Identities=8% Similarity=-0.069 Sum_probs=205.9
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCH---HHHHHHhcccCCCCCCCCcchHHHHHHHHHh
Q 047146 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI---KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199 (608)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 199 (608)
+...+.+.|++++|.+++....+.|- ...+..|-.+|...|+. ++|...|+.... .++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~----~~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAAD----TSPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----CCHHHHHHHHHHHHh
Confidence 44556677889999999998888762 33444555566667777 888888888543 266667777775655
Q ss_pred CC-----CchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCc---hHHHHHHHHHHHccCCCCCchHHHHHHHHHHHh
Q 047146 200 MD-----YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL---SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271 (608)
Q Consensus 200 ~g-----~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 271 (608)
.+ ++++|+..|++..+.|.. ..+..+...|...+.. ..+.+.+......+ +......|...|..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g-----~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG-----YPEAGLAQVLLYRT 153 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-----CTTHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-----CHHHHHHHHHHHHc
Confidence 55 678899999888876532 2555566666554433 33444444444443 45566677777777
Q ss_pred cCCh----HHHHHHHccCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHH
Q 047146 272 CGNI----PSARKVFDEMPVKNVVSWNSMIAGLTHRG---QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344 (608)
Q Consensus 272 ~g~~----~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 344 (608)
.+.+ +.+..+++.....++..+..+...|...| +.++|++.|++..+.| .++...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g------ 226 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA------ 226 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG------
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC------
Confidence 7744 44445555555556667777777777777 7777887777777766 34444333333333322
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCC
Q 047146 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG-L--AIHGKAWKALDIFSEMSQVG 421 (608)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g 421 (608)
....+++++|.+.|+.....+...+..+... + ...+++++|+.+|++..+.|
T Consensus 227 -------------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 227 -------------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp -------------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred -------------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 0001455555555554442234444444444 2 34567777777777776654
Q ss_pred CCCCHHHHHHHHHHHhccc-----cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCC
Q 047146 422 IEPDEVTFVGVLSACSHAG-----LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AGLIREALDLIKSMPLVP 492 (608)
Q Consensus 422 ~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p 492 (608)
+...+..+...|. .| ++++|.+.|++.. ..+...+..|..+|.. ..++++|.+.|++.-...
T Consensus 282 ---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 282 ---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp ---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred ---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 4445555555554 44 7777777777664 3345566666666655 337777777777761122
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 493 DAFVWGALLGACKI----HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 493 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+......|...|.. ..+.++|...++++.+.++.........+......++.++|..+.++..+
T Consensus 353 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 353 QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33333444444432 45778888888887777655432222222222233456677777776654
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=1.9e-12 Score=118.34 Aligned_cols=197 Identities=10% Similarity=-0.060 Sum_probs=155.1
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 44556677777888888888888887654 2356778888888888888888888888887742 3355678888888
Q ss_pred Hhcc-ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 047146 436 CSHA-GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVE 511 (608)
Q Consensus 436 ~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 511 (608)
+... |++++|...++.+.+ .+..| +...+..+...+...|++++|++.++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 889998888888876 33344 3567788888888889999998888877 3334 5778888888888899999
Q ss_pred HHHHHHHHHHhcCC-CCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 512 LAEIVMENLVRFEP-EGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 512 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+|...++++.+..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999988888 88888888888888999999999888888653
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=1.4e-12 Score=121.87 Aligned_cols=197 Identities=11% Similarity=-0.035 Sum_probs=153.9
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 436 (608)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455667777778888888888887664 2356777888888888888888888888887752 23556777788888
Q ss_pred hccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 513 (608)
...|++++|.+.++++.+ .+..| +...+..+...|...|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888866 33445 4567778888888888888888888877 3334 577788888888888999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
...++++.+..|++...+..++.+|.+.|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999988888888888888888888888899999988888887543
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=2.6e-13 Score=125.87 Aligned_cols=197 Identities=13% Similarity=0.108 Sum_probs=143.7
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344556677777888888888888887643 356778888888888899999999888888752 3356678888888
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 513 (608)
+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88889999999988888773 2345677888888888999999999888887 3333 677888888888999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
...++++.+..|+++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999888889999999999999999999999887543
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=1e-12 Score=124.20 Aligned_cols=218 Identities=11% Similarity=-0.034 Sum_probs=163.4
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChH
Q 047146 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RD----VYSYTAMIVGLAIHGKAW 408 (608)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~ 408 (608)
+...|+++.|...+..+.+.. +.+...+..+..+|...|++++|...|++... ++ ...|..+...+...|+++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 334444444444444443332 12233455666677777777777777776543 22 234888999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 047146 409 KALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIK 486 (608)
Q Consensus 409 ~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (608)
+|+..|++..+. .| +..++..+...+...|++++|...++++.+ ..| +...+..+...+...+++++|.+.++
T Consensus 92 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 92 LAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999985 44 456899999999999999999999999976 344 56777777734445569999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 487 SM-PLVP-DAFVWGALLGACKIHAK---VELAEIVMENLVRFE---PEG-----DGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 487 ~~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
++ ...| +...+..+...+...|+ +++|...++++.+.. |+. ..+|..++..|.+.|++++|.+.+++
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88 4455 46778888888888888 888999999998875 442 25788999999999999999999999
Q ss_pred HHhCC
Q 047146 554 MKERK 558 (608)
Q Consensus 554 m~~~~ 558 (608)
..+..
T Consensus 247 al~~~ 251 (272)
T 3u4t_A 247 ILALD 251 (272)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 98643
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=1.3e-12 Score=133.03 Aligned_cols=345 Identities=11% Similarity=-0.026 Sum_probs=228.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCc---hHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 047146 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL---SLGIKIHRYITDNHFNLSPDVFIHNALIDM 268 (608)
Q Consensus 192 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 268 (608)
.+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..|..+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------~~~A~~~Lg~~ 78 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------------CHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 35667788899999999999998776 344455566666777777 8999999888754 34455666665
Q ss_pred HHhcC-----ChHHHHHHHccCCC-CChhhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 047146 269 YLKCG-----NIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFK---EALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339 (608)
Q Consensus 269 ~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 339 (608)
+...+ +.++|.+.|++... .+...+..|...|...+..+ ++.+.+.+....| +......+...|...+
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55554 77889999988763 34557888888888776544 4555555555544 2345556666677767
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC---CHHHHHHHHhhcCC---CChhHHHHHHHHHHHc----CChHH
Q 047146 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG---RIDQAFGVFRSMKC---RDVYSYTAMIVGLAIH----GKAWK 409 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~~~ 409 (608)
.++.+......+.+.-...++..+..|..+|.+.| +.++|.+.|+...+ ++...+..+...|... +++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 55444443333333222334447788889999999 89999999987653 3444446677777554 68999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC-----CHHHH
Q 047146 410 ALDIFSEMSQVGIEPDEVTFVGVLSA-C--SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG-----LIREA 481 (608)
Q Consensus 410 A~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A 481 (608)
|+.+|++.. .| +...+..+... + ...+++++|.+.|++..+ .| +...+..|..+|. .| ++++|
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 999999987 32 34455555555 3 568999999999999887 33 6677778888887 55 99999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----CCChHHHHHHHHH
Q 047146 482 LDLIKSMPLVPDAFVWGALLGACKI----HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS----KNRWKEALKLRKK 553 (608)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 553 (608)
.+.|++.- ..++..+..+...|.. ..++++|...++++.+. .++.....|+.+|.. ..+.++|...+++
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99999987 5577787777777765 44999999999998875 456688899999985 4689999999999
Q ss_pred HHhCCCc
Q 047146 554 MKERKVK 560 (608)
Q Consensus 554 m~~~~~~ 560 (608)
..+.|..
T Consensus 384 A~~~g~~ 390 (452)
T 3e4b_A 384 AKAQDTP 390 (452)
T ss_dssp HHTTCCH
T ss_pred HHHCCCH
Confidence 9888764
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=1.1e-11 Score=117.20 Aligned_cols=224 Identities=11% Similarity=0.014 Sum_probs=141.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047146 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368 (608)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 368 (608)
+..++..+...+...|++++|+..|++..+. -+...+.. +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~-----------------------------------lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFN-----------------------------------LGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHH-----------------------------------HHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHH-----------------------------------HHH
Confidence 4455666666667777777777777766652 22333433 444
Q ss_pred HhHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 047146 369 MYAK----CGRIDQAFGVFRSMKC-RDVYSYTAMIVGLAI----HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH- 438 (608)
Q Consensus 369 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 438 (608)
+|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 4444 5555555555544332 244555555566666 666666666666666643 45566666666666
Q ss_pred ---cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c
Q 047146 439 ---AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AGLIREALDLIKSMPLVPDAFVWGALLGACKI----H 507 (608)
Q Consensus 439 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 507 (608)
.+++++|...|++..+ .+ +...+..+...|.. .+++++|++.+++.-...+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 6777777777777665 22 44556666666666 67777777777765111345666667777777 7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 047146 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSS----KNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 559 (608)
+++++|...++++.+.+| +..+..++.+|.+ .+++++|.+.+++..+.|.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 788888888887777765 4567777888887 7888888888887776654
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=5.8e-12 Score=117.56 Aligned_cols=204 Identities=15% Similarity=0.000 Sum_probs=147.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047146 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369 (608)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (608)
...|..+...+...|++++|+..|+++.+.. +.+...+ ..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~-----------------------------------~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAH-----------------------------------AALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHH-----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHH-----------------------------------HHHHHH
Confidence 4567777788888888888888888877642 2233334 444555
Q ss_pred hHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHH
Q 047146 370 YAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEG 445 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 445 (608)
|...|++++|.+.|+++. ..+...|..+...|...|++++|.++++++...+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555443 23456667777777778888888888887776434554 34677777788888888888
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 446 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
.+.++++.+. .+.+...+..++..|...|++++|.+.++++ ...| +...+..+...+...|++++|.+.++++.+.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888763 2335677888888889999999999888887 4444 6677888888889999999999999999999
Q ss_pred CCCCCchH
Q 047146 524 EPEGDGAY 531 (608)
Q Consensus 524 ~p~~~~~~ 531 (608)
.|+++...
T Consensus 239 ~p~~~~~~ 246 (252)
T 2ho1_A 239 YPGSLEYQ 246 (252)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 99887544
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=2.4e-12 Score=121.78 Aligned_cols=239 Identities=12% Similarity=-0.056 Sum_probs=166.0
Q ss_pred CCCchHHHHHHHHHHHCCCC---CCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChH
Q 047146 200 MDYPTEAILSFFDMCQANLR---PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276 (608)
Q Consensus 200 ~g~~~~a~~~~~~m~~~~~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 276 (608)
.|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+..+. +..++..+..+|...|+++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHccCHH
Confidence 46778888888888765321 13456777777888888888888888888887543 6778888888888888888
Q ss_pred HHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047146 277 SARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353 (608)
Q Consensus 277 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (608)
+|.+.|++.. +.+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|+++.|...+.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888888765 345677888888888889999999988888875 45555555555555667888888888876666
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 047146 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD-------VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426 (608)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 426 (608)
.. +++...+ .++..+...++.++|...+......+ ...|..+...|...|++++|...|++.... .|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 53 2333333 36666777777788888887776532 356777777788888888888888887763 4533
Q ss_pred HHHHHHHHHHhccccHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
. .....++...|++++|.+.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 2 22244556667777766554
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=2.6e-12 Score=116.82 Aligned_cols=191 Identities=14% Similarity=0.023 Sum_probs=83.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047146 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371 (608)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 371 (608)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444444444444444444444331 1222333333333333333333333333333332 122333334444444
Q ss_pred hc-----------CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 372 KC-----------GRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 372 ~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
+. |++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 44 555555555554431 234455555555666666666666666655544 44555555555566
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
..|++++|...|+++.+. -+.+...+..+..++.+.|++++|++.+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666655541 1223445555555555666666665555543
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=1.8e-12 Score=114.53 Aligned_cols=166 Identities=16% Similarity=0.099 Sum_probs=141.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHH
Q 047146 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCM 468 (608)
Q Consensus 390 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 468 (608)
+...|..+...|...|++++|++.|++..+. .| +..++..+..++.+.|++++|...+..+... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 5567888888888999999999999998874 56 4558888888899999999999999888762 23356677788
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHH
Q 047146 469 VDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 546 (608)
...+...++++.|.+.+++. ...| +...+..+...+...|++++|++.++++++.+|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999988887 3344 677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 047146 547 ALKLRKKMKERKV 559 (608)
Q Consensus 547 A~~~~~~m~~~~~ 559 (608)
|++.+++..+.+.
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999987543
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=8e-13 Score=122.57 Aligned_cols=213 Identities=11% Similarity=0.074 Sum_probs=141.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047146 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369 (608)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (608)
...|..+...+...|++++|...|++..+.. +.+ ...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~-----------------------------------~~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KED-----------------------------------AIPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTC-----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-ccc-----------------------------------HHHHHHHHHH
Confidence 3456666666667777777777777766532 222 3334455555
Q ss_pred hHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 047146 370 YAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 446 (608)
|...|++++|.+.|++.. ..+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 666666666666666543 2356677777788888888888888888887752 335667778888888889999999
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 447 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
..++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 988888773 2345778888889999999999999998887 3333 67788899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhC
Q 047146 525 PEGDGAYILMTNIYSSK 541 (608)
Q Consensus 525 p~~~~~~~~l~~~~~~~ 541 (608)
|+++..+..+..+....
T Consensus 224 p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHH 240 (243)
T ss_dssp TTCHHHHHHHTC-----
T ss_pred cchHHHHHHHHHHHhhc
Confidence 99987777766554433
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.9e-11 Score=115.60 Aligned_cols=226 Identities=10% Similarity=-0.074 Sum_probs=157.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCCC-ChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChHHHHHHH
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTH----RGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 332 (608)
+...+..+...|...|++++|.+.|++...+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 6778888999999999999999999987644 56778888899999 999999999999998865 455555555
Q ss_pred HHHhc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHH----c
Q 047146 333 NSCAN----IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI----H 404 (608)
Q Consensus 333 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~ 404 (608)
..+.. .+++++|...++...+.+ +...+..+...|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK----------------------------------YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC----------------------------------CccHHHHHHHHHHcCCCcc
Confidence 55555 555555555555544432 34445555555555 6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cC
Q 047146 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH----AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AG 476 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 476 (608)
+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. .+...+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 66666666666666643 44455555566665 67777777777777652 244566667777777 77
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCC
Q 047146 477 LIREALDLIKSM-PLVPDAFVWGALLGACKI----HAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 477 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
++++|++.+++. ... +...+..+...+.. .+++++|...++++.+.+|++.
T Consensus 201 ~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 201 NFKEALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred cHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 777777777766 222 35566667777777 7888888888888888877653
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=1e-11 Score=113.48 Aligned_cols=207 Identities=10% Similarity=-0.059 Sum_probs=146.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047146 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369 (608)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (608)
...|..+...+...|++++|+..|++..+.. +.+ ...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~-----------------------------------~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKN-----------------------------------ELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccc-----------------------------------hHHHHHHHHH
Confidence 4456666666666677777766666665542 222 3344555556
Q ss_pred hHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHH
Q 047146 370 YAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIH-GKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEE 444 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 444 (608)
|...|++++|.+.+++.. ..+...|..+...+... |++++|+..++++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666543 23556677777788888 888888888888877433454 3577777888888888888
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047146 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLV--PDAFVWGALLGACKIHAKVELAEIVMENLV 521 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 521 (608)
|...++++.+. .+.+...+..++..+.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+..+++.+.
T Consensus 132 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888888762 2234677888888889999999999888887 222 366677777788889999999999999999
Q ss_pred hcCCCCCchHHHH
Q 047146 522 RFEPEGDGAYILM 534 (608)
Q Consensus 522 ~~~p~~~~~~~~l 534 (608)
+..|+++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 9999887554433
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=2.7e-10 Score=119.94 Aligned_cols=428 Identities=10% Similarity=0.012 Sum_probs=281.0
Q ss_pred HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCC---HHHHHHHhccc
Q 047146 102 IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL---IKAVHKLFHFR 178 (608)
Q Consensus 102 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m 178 (608)
+..|++.+..+. -|..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.|+ ++.+..+|++.
T Consensus 52 i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 52 IGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 666777666553 47778888888888888889999999988876 44566778888888888888 89999999886
Q ss_pred CCCCC-CCCcchHHHHHHHHHhCCCc--------hHHHHHHHHHHH-CCC-CCC-HhHHHHHHHHhhc---------cCC
Q 047146 179 QHPQA-QRDLVSWTTLIQAYVKMDYP--------TEAILSFFDMCQ-ANL-RPD-GMILVIVLSACSK---------LGD 237 (608)
Q Consensus 179 ~~~~~-~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~-~~t~~~ll~~~~~---------~~~ 237 (608)
....+ .|++..|..-+....+.++. +.+.++|+.... .|. .|+ ...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 66442 36777787777655554443 233466766543 455 554 3455555544332 234
Q ss_pred chHHHHHHHHHHHccCCCCCchHHHHHHHHHHHh-------------cCChHHHHHHHcc-------CCC----------
Q 047146 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK-------------CGNIPSARKVFDE-------MPV---------- 287 (608)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~-------~~~---------- 287 (608)
++.+..+|..++.. +...-..+|......--. ..+++.|...+.+ +..
T Consensus 210 ~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred HHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 56777888887753 221122333322221111 1123334444432 110
Q ss_pred ----C--C------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHH-HH
Q 047146 288 ----K--N------VVSWNSMIAGLTHRG-------QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK-WV 347 (608)
Q Consensus 288 ----~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~~ 347 (608)
| + ...|...+.---..+ ..+.+..+|++.... ++-+...|.....-+...|+.+.|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 0 0 124555554333322 123456678777765 3446667777777777888888886 99
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-------------CC------------hhHHHHHHHHHH
Q 047146 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-------------RD------------VYSYTAMIVGLA 402 (608)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~ 402 (608)
++...... +.+...+...+....+.|++++|.++|+.+.. |+ ...|...+....
T Consensus 367 l~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 99888643 45667777888888899999999999987753 21 236888888888
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047146 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA-GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 481 (608)
+.|..+.|..+|.+..+.-..+....|......-.+. ++.+.|.++|+...+. ++.+...|...++.....|+.+.|
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHH
Confidence 8899999999999998751112233443333332333 4589999999999884 444666778888888889999999
Q ss_pred HHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 482 LDLIKSM-PLVP----DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 482 ~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
..+|++. ...| ....|...+..-...|+.+.+..+.+++.+..|+++ ....+++-|
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 9999987 3333 345888888888899999999999999999999875 333444333
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=3.6e-12 Score=125.76 Aligned_cols=243 Identities=9% Similarity=0.021 Sum_probs=180.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047146 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW-LELGKWVHTYLDKNHINTDGFIGNALVDM 369 (608)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (608)
..|+.+...+...|++++|+..+++.++.. +-+...|..+..++...|+ +++|...++.+++.. +.+..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456666667777777777777777777642 2334556666666667775 777777777776655 3356677778888
Q ss_pred hHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cccHHH
Q 047146 370 YAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSH-AGLVEE 444 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~-~g~~~~ 444 (608)
|.+.|++++|+..|+++. ..+...|..+..++...|++++|+..++++.+. .| +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888775 346788888888899999999999999999884 55 45688888888888 555466
Q ss_pred H-----HHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-------
Q 047146 445 G-----CKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAG--LIREALDLIKSMPLVP-DAFVWGALLGACKIHA------- 508 (608)
Q Consensus 445 a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~------- 508 (608)
| +..++++.. +.| +...|..+..++.+.| ++++|++.++++...| +...+..+...+.+.|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 477777766 345 5678888888888887 6888888888774445 5667788888887764
Q ss_pred --CHHHHHHHHHHH-HhcCCCCCchHHHHHHHHHh
Q 047146 509 --KVELAEIVMENL-VRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 509 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 540 (608)
..++|..+++++ .+.+|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999988888888776654
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=7.5e-13 Score=133.54 Aligned_cols=196 Identities=14% Similarity=0.040 Sum_probs=136.4
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHHcCC-----------------hHHHHHHH
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMKC---------RDVYSYTAMIVGLAIHGK-----------------AWKALDIF 414 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-----------------~~~A~~~~ 414 (608)
.++..+...|...|++++|...+++... ....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3445566666666666666666655431 123456667777777777 77777777
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 047146 415 SEMSQV----GIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIREALDLI 485 (608)
Q Consensus 415 ~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 485 (608)
++..+. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 765432 11122 236777777888888888888888887662211112 236778888888999999998888
Q ss_pred HhC-CC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhCCChHHHHHHH
Q 047146 486 KSM-PL---VP----DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG------DGAYILMTNIYSSKNRWKEALKLR 551 (608)
Q Consensus 486 ~~~-~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 551 (608)
++. .. .. ...++..+...+...|++++|...++++++..+.. ...+..++.+|.+.|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 776 11 11 24577778888999999999999999988775433 347888999999999999999999
Q ss_pred HHHHh
Q 047146 552 KKMKE 556 (608)
Q Consensus 552 ~~m~~ 556 (608)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=2.7e-12 Score=126.65 Aligned_cols=224 Identities=10% Similarity=0.029 Sum_probs=191.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC-HHHHHHHHhhcCC---CChhHHHHHHHHH
Q 047146 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR-IDQAFGVFRSMKC---RDVYSYTAMIVGL 401 (608)
Q Consensus 326 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 401 (608)
..+..+...+...|+++.|...++.+++.. +.+..+|+.+..+|...|+ +++|+..|++... .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667777888999999999999999876 4567788899999999997 9999999998763 4778999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHh-cCCH
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGR-AGLI 478 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~ 478 (608)
...|++++|+..|+++.+. .| +...|..+..++...|++++|+..++++++ +.| +...|+.+..++.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999984 66 566999999999999999999999999988 345 67889999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC-------
Q 047146 479 REA-----LDLIKSM-PLVP-DAFVWGALLGACKIHA--KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN------- 542 (608)
Q Consensus 479 ~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 542 (608)
++| ++.+++. .+.| +...|..+...+...| ++++|...++++ +..|+++.++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4777776 5556 6778988888888888 689999999998 889999999999999999875
Q ss_pred --ChHHHHHHHHHH-Hh
Q 047146 543 --RWKEALKLRKKM-KE 556 (608)
Q Consensus 543 --~~~~A~~~~~~m-~~ 556 (608)
.+++|+++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 358999999998 54
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.8e-12 Score=130.26 Aligned_cols=270 Identities=10% Similarity=0.001 Sum_probs=125.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCC--CC-C----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-h
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMP--VK-N----VVSWNSMIAGLTHRGQFKEALDIFRRMQGL----GLKPD-D 325 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 325 (608)
....+......+...|++++|...|++.. .| + ...|..+...+...|++++|...+++.... +-.|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 44555666667777777777777776654 12 2 235666666777777777777777665432 11111 2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcC----C-CCchhHHHHHHHHhHhcCC--------------------HHHHH
Q 047146 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNH----I-NTDGFIGNALVDMYAKCGR--------------------IDQAF 380 (608)
Q Consensus 326 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~g~--------------------~~~A~ 380 (608)
.++..+...+...|+++.|...+..+.+.. . .....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 344444555555666666665555543321 0 0012244445555555555 55555
Q ss_pred HHHhhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccccHHHHH
Q 047146 381 GVFRSMKC-----R----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI-EPD----EVTFVGVLSACSHAGLVEEGC 446 (608)
Q Consensus 381 ~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~ 446 (608)
+.+++... + ...++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 44443221 0 112344444445555555555555554433100 011 113444444445555555555
Q ss_pred HHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 047146 447 KHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIREALDLIKSM----PLVPD----AFVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 447 ~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~ 514 (608)
..+++..+...-.++ ..++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555444331100011 233444444455555555554444443 00111 223444444444555555555
Q ss_pred HHHHHHHhcCCCC
Q 047146 515 IVMENLVRFEPEG 527 (608)
Q Consensus 515 ~~~~~~~~~~p~~ 527 (608)
..++++.++.+..
T Consensus 328 ~~~~~al~~~~~~ 340 (406)
T 3sf4_A 328 HFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 5555554444444
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=3.8e-12 Score=124.07 Aligned_cols=261 Identities=14% Similarity=0.041 Sum_probs=173.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CchhHHHHH
Q 047146 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPD----DFTLVCVLNSCANIGWLELGKWVHTYLDKN----HIN-TDGFIGNAL 366 (608)
Q Consensus 296 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 366 (608)
....+...|++++|+..|++..+.. +.+ ...+..+...+...|+++.|...+..+.+. +.. ....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3344555555555555555555432 111 133444455555555555555555544321 111 123455666
Q ss_pred HHHhHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 047146 367 VDMYAKCGRIDQAFGVFRSMKC-----RD----VYSYTAMIVGLAIHGK--------------------AWKALDIFSEM 417 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m 417 (608)
...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777888777777766532 22 2367777777888888 88888888776
Q ss_pred HHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 418 SQV----GIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 418 ~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 11222 236777788888999999999999888752111122 347788889999999999999998876
Q ss_pred -C---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 489 -P---LVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEG------DGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 489 -~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
. ..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|.+.|++++|...+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 1122 4577778888999999999999999998875443 337889999999999999999999998
Q ss_pred HhC
Q 047146 555 KER 557 (608)
Q Consensus 555 ~~~ 557 (608)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=1.6e-12 Score=133.35 Aligned_cols=192 Identities=8% Similarity=-0.069 Sum_probs=159.9
Q ss_pred chhHHHHHHHHhHhcCCH-HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRI-DQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 434 (608)
+...+..+..+|...|++ ++|++.|++.. ..+...|..+...|...|++++|+..|++..+ ..|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 455556666677777777 77777777654 23567888888889999999999999999888 4677788888888
Q ss_pred HHhcc---------ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC----
Q 047146 435 ACSHA---------GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA--------GLIREALDLIKSM-PLVP---- 492 (608)
Q Consensus 435 ~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p---- 492 (608)
.+... |++++|.+.++++.+. .+.+...|..+..+|... |++++|++.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 89998 9999999999999873 233578888999999988 9999999999988 4455
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
+...|..+..++...|++++|...++++.++.|+++.++..++.++...|++++|.+.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999999999999999999999999999999999755443
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=2.4e-12 Score=129.45 Aligned_cols=198 Identities=12% Similarity=-0.013 Sum_probs=145.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hHHHHHHHHHHhccCC--------------------hHHHH
Q 047146 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGL-KPD----DFTLVCVLNSCANIGW--------------------LELGK 345 (608)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~a~ 345 (608)
.++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+ ++.|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3456666677777777777777776654210 011 3367777778888888 99999
Q ss_pred HHHHHHHHc----CC-CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHH
Q 047146 346 WVHTYLDKN----HI-NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RD----VYSYTAMIVGLAIHGKAWKAL 411 (608)
Q Consensus 346 ~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~ 411 (608)
..+....+. +. +....++..+..+|...|++++|...+++..+ ++ ..+|..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 988876542 21 12245678889999999999999999987652 22 247888899999999999999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHHHH
Q 047146 412 DIFSEMSQV----GIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIREAL 482 (608)
Q Consensus 412 ~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 482 (608)
..+++.... +..+. ..++..+...+...|++++|...++...+...-.++ ...+..+...|.+.|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998753 11111 357788888999999999999999998763221222 567888999999999999999
Q ss_pred HHHHhC
Q 047146 483 DLIKSM 488 (608)
Q Consensus 483 ~~~~~~ 488 (608)
+.+++.
T Consensus 328 ~~~~~a 333 (406)
T 3sf4_A 328 HFAEKH 333 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=1.2e-09 Score=114.94 Aligned_cols=421 Identities=9% Similarity=0.020 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCC---chHHHHHHH
Q 047146 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY---PTEAILSFF 211 (608)
Q Consensus 135 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~ 211 (608)
+....++..+... +.|...|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.|+ ++.+.++|+
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3344556555554 368899999999999999999999999997664 34566778888888888898 999999999
Q ss_pred HHHHCC-CCCCHhHHHHHHHHhhccCCc--------hHHHHHHHHHHHccCCC-CC-chHHHHHHHHHHHh---------
Q 047146 212 DMCQAN-LRPDGMILVIVLSACSKLGDL--------SLGIKIHRYITDNHFNL-SP-DVFIHNALIDMYLK--------- 271 (608)
Q Consensus 212 ~m~~~~-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~--------- 271 (608)
+..... ..|+...|..-+....+.++. +...++|+.++.. .+. .| +..+|...+.....
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~-vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK-CAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH-TTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-hCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 998753 247887777777665555543 3445778777764 122 22 45788888876543
Q ss_pred cCChHHHHHHHccCCC-CC--h-hhHH---HHHHHH----------HhcCChhHHHHHHHHHHh--CCCC----------
Q 047146 272 CGNIPSARKVFDEMPV-KN--V-VSWN---SMIAGL----------THRGQFKEALDIFRRMQG--LGLK---------- 322 (608)
Q Consensus 272 ~g~~~~A~~~~~~~~~-~~--~-~~~~---~li~~~----------~~~g~~~~A~~~~~~m~~--~g~~---------- 322 (608)
.++++.+.++|++... |. . .+|. .+.... -...+++.|...+.++.. .++.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3457788999988763 21 1 2332 222111 001223445555554322 1111
Q ss_pred -----C-----Ch---HHHHHHHHHHhccC-------ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH-H
Q 047146 323 -----P-----DD---FTLVCVLNSCANIG-------WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF-G 381 (608)
Q Consensus 323 -----p-----~~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~ 381 (608)
| +. ..|...+.---..+ ..+.+..+|+.++... +....+|-..+..+...|+.++|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 00 12222222222211 1234556777776653 457788888888888899999996 9
Q ss_pred HHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHh
Q 047146 382 VFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG---------IEPD------------EVTFVGVLSACS 437 (608)
Q Consensus 382 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---------~~p~------------~~~~~~ll~~~~ 437 (608)
+|++... .+...|-..+...-+.|++++|.++|+++.... -.|+ ...|...+....
T Consensus 366 il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9987652 355678888888999999999999999988631 0142 236777788888
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG-LIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~ 514 (608)
+.|+.+.|.++|..+.+.. -.+....|...+..-.+.| +.+.|.++|+.. ...-+...|...+......|+.+.|+
T Consensus 446 R~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 8999999999999998731 1122344544444444444 589999999987 22236777888888888899999999
Q ss_pred HHHHHHHhcCCC---CCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 515 IVMENLVRFEPE---GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 515 ~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
.+|++++...|+ ....|..++..-.+.|+.+.+.++.+++.+.-+.
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999998874 3457888899999999999999999999876544
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=3.6e-11 Score=119.96 Aligned_cols=158 Identities=8% Similarity=-0.030 Sum_probs=68.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-CCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHcC--C----CCchhHHH
Q 047146 296 MIAGLTHRGQFKEALDIFRRMQGLG-LKPD----DFTLVCVLNSCANIGWLELGKWVHTYLDKNH--I----NTDGFIGN 364 (608)
Q Consensus 296 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 364 (608)
....+...|++++|+..|++..+.- -.++ ..++..+...+...|+++.|...+....+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445566677777777777665531 0122 1334444444555555555555544433211 0 00122334
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMKC-----RD----VYSYTAMIVGLAIHGKAWKALDIFSEMSQV----GIEPD-EVTFV 430 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~ 430 (608)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 444445555555555544443321 11 123444444444444444444444444331 11121 22344
Q ss_pred HHHHHHhccccHHHHHHHHHHhH
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~ 453 (608)
.+...+...|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444444443
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=9.6e-12 Score=125.39 Aligned_cols=134 Identities=10% Similarity=0.024 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC----Chh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGI-EPD----EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP----QTE 463 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 463 (608)
.+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++++.+...-.. ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555666666666666666666544210 011 12566666777777777777777776655211111 145
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-PL---VP----DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
.+..+...|...|++++|.+.+++. .. .+ ...++..+...+...|++++|...++++.++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6677777888888888887777766 11 11 2346677778888888888888888888877554
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=2.5e-11 Score=107.11 Aligned_cols=166 Identities=10% Similarity=0.020 Sum_probs=141.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLS 434 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 434 (608)
++.+|..+...|.+.|++++|++.|++.. ..+...|..+...|.+.|++++|+..+++.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56678889999999999999999998765 246788999999999999999999999998885 44 4557777788
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 512 (608)
.+...++++.+...+...... .+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 899999999999999998772 2345778889999999999999999999988 4455 67889999999999999999
Q ss_pred HHHHHHHHHhcCCCCC
Q 047146 513 AEIVMENLVRFEPEGD 528 (608)
Q Consensus 513 a~~~~~~~~~~~p~~~ 528 (608)
|...++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998764
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=1.6e-11 Score=119.68 Aligned_cols=134 Identities=10% Similarity=0.045 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQV----GIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TE 463 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 463 (608)
.+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4444555555566666666665555431 1001 1125566666667777777777777666542111111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-PL---VPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
.+..+...|...|++++|...+++. .. .++ ..++..+...+...|++++|...++++.++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5667777777777777777777665 11 111 346667778888888888888888888877554
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=2.1e-11 Score=121.71 Aligned_cols=225 Identities=9% Similarity=-0.032 Sum_probs=172.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CC-----hhHHH
Q 047146 331 VLNSCANIGWLELGKWVHTYLDKN----HINT-DGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RD-----VYSYT 395 (608)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 395 (608)
....+...|+++.|...+....+. +-.+ ...++..+..+|...|++++|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445567899999999999998764 2111 346788899999999999999988887642 22 35788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccccHHHHHHHHHHhHhh---cCCCC-ChhHHH
Q 047146 396 AMIVGLAIHGKAWKALDIFSEMSQVGI-EPDE----VTFVGVLSACSHAGLVEEGCKHFLDMSRV---YNLQP-QTEHYG 466 (608)
Q Consensus 396 ~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~ 466 (608)
.+...|...|++++|+..+++..+... .++. .++..+...+...|++++|.+.+++..+. .+..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999998875311 1121 37888899999999999999999998762 12313 466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CC-----CC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047146 467 CMVDLFGRAGLIREALDLIKSM-PL-----VP-DAFVWGALLGACKIHAK---VELAEIVMENLVRFEPEGDGAYILMTN 536 (608)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~-~~-----~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 536 (608)
.+...|.+.|++++|.+.+++. .+ .| ....+..+...+...|+ +++|..++++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999887 11 22 22335666677888888 77777777766 233444557889999
Q ss_pred HHHhCCChHHHHHHHHHHHh
Q 047146 537 IYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 537 ~~~~~g~~~~A~~~~~~m~~ 556 (608)
+|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999864
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=1.8e-11 Score=130.56 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCM 468 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 468 (608)
..+|+.+...|.+.|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|++.|+++.+ +.| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 46788888888889999999999998888 4665 56888888899999999999999998877 345 47788899
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHH
Q 047146 469 VDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 546 (608)
..+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999887 5566 677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 047146 547 ALKLRKKMKE 556 (608)
Q Consensus 547 A~~~~~~m~~ 556 (608)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=3.1e-11 Score=110.72 Aligned_cols=204 Identities=14% Similarity=0.030 Sum_probs=130.7
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMK---C-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVL 433 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll 433 (608)
++..+......|...|++++|...|++.. . ++...+..+..++...|++++|+..+++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 45566666777777777777777777554 2 5556666677777777777777777777776 35543 4666677
Q ss_pred HHHhccccHHHHHHHHHHhHhhcCCCC-Ch-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 047146 434 SACSHAGLVEEGCKHFLDMSRVYNLQP-QT-------EHYGCMVDLFGRAGLIREALDLIKSM-PLVPD---AFVWGALL 501 (608)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~ 501 (608)
.++...|++++|...+++..+. .| +. ..|..+...+...|++++|++.+++. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 7777777777777777777662 23 23 34666666777777777777777766 55555 33555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCC
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (608)
..+.. .+...++++..+.+.+...|..+ .....+.+++|+..+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l------------------------ 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL------------------------ 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc------------------------
Confidence 55533 34455566666665554444333 234455679999999998753
Q ss_pred CCCCChhHHHHHHHHHHHH
Q 047146 582 KSHPKTLEIYKLLDEIMHQ 600 (608)
Q Consensus 582 ~~~p~~~~~~~~l~~~~~~ 600 (608)
.|+++++...|..+...
T Consensus 210 --~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 210 --SPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp --CTTCHHHHHHHHHHHTT
T ss_pred --CCCCHHHHHHHHHHHHh
Confidence 47777777777766543
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=7e-10 Score=106.79 Aligned_cols=218 Identities=9% Similarity=-0.027 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047146 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCA-------NIGWL-------ELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372 (608)
Q Consensus 307 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 372 (608)
++|...|++..... +-+...|..+...+. ..|+. ++|..+++..++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666665531 223334444444333 23443 5555555555552122344455666666666
Q ss_pred cCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccccHHHHHH
Q 047146 373 CGRIDQAFGVFRSMKC--R-DVY-SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-HAGLVEEGCK 447 (608)
Q Consensus 373 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~ 447 (608)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666665542 2 232 56666666666777777777777766642 222333333222211 2567777777
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047146 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-P---LVP--DAFVWGALLGACKIHAKVELAEIVMENLV 521 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 521 (608)
+|+...+. .+.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77776652 1224566666677777777777777777666 2 233 34566666666666777777777777777
Q ss_pred hcCCCCC
Q 047146 522 RFEPEGD 528 (608)
Q Consensus 522 ~~~p~~~ 528 (608)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7766654
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=2.8e-12 Score=123.68 Aligned_cols=236 Identities=11% Similarity=0.060 Sum_probs=118.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHc------C-
Q 047146 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGL-------GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN------H- 355 (608)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 355 (608)
..++..+...+...|++++|+..|+++.+. ..+.....+..+...+...|+++.|...+..+.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788888888999999999999888763 11222344555555566666666666666555432 1
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 047146 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV------GIEPD-EVT 428 (608)
Q Consensus 356 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~ 428 (608)
.+....++..+... |...|++++|...++++.+. +-.|+ ...
T Consensus 107 ~~~~~~~~~~l~~~-------------------------------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVL-------------------------------YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHH-------------------------------HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHH-------------------------------HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 11123334444444 44444555544444444432 11121 224
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhHhhc-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-C---------CCC
Q 047146 429 FVGVLSACSHAGLVEEGCKHFLDMSRVY-----NLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-P---------LVP 492 (608)
Q Consensus 429 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p 492 (608)
+..+...+...|++++|.++++++.+.. +..| ....+..+...|...|++++|.+.++++ . ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4445555555555555555555554410 1112 2334555555555556666555555544 1 011
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 493 D-------AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 493 ~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
. ...+..+...+...+.+.++...++......|....++..++.+|.+.|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 111112222233444455555566666666666667777788888888888888888777654
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=2.4e-10 Score=110.12 Aligned_cols=214 Identities=11% Similarity=0.012 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhH-------hcCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHH
Q 047146 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYA-------KCGRI-------DQAFGVFRSMKC---R-DVYSYTAMIVGLAI 403 (608)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 403 (608)
+.|..+++.++... +.++.+|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777788777653 456777777777765 35886 899999997653 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH-hcCCHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIEPDE-V-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG-RAGLIRE 480 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 480 (608)
.|++++|..+|++..+ +.|+. . .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 56654 3 7889999999999999999999999872 2334555554444432 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 481 ALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRF---EPE-GDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 481 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
|.++|++. ...| +...|..++..+...|++++|..+++++++. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 3334 6789999999999999999999999999996 443 5568999999999999999999999999
Q ss_pred HhCCCc
Q 047146 555 KERKVK 560 (608)
Q Consensus 555 ~~~~~~ 560 (608)
.+..+.
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 876654
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=4.5e-11 Score=122.47 Aligned_cols=178 Identities=10% Similarity=0.025 Sum_probs=156.6
Q ss_pred CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHH
Q 047146 375 RIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKA-WKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 375 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
+++++...++... ..+...|..+...+...|++ ++|+..|++..+. .|+ ...+..+..++...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666543 34678899999999999999 9999999999985 554 679999999999999999999999
Q ss_pred HHhHhhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--------CCH
Q 047146 450 LDMSRVYNLQPQTEHYGCMVDLFGRA---------GLIREALDLIKSM-PLVP-DAFVWGALLGACKIH--------AKV 510 (608)
Q Consensus 450 ~~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~ 510 (608)
+++.+ +.|+...+..+..+|... |++++|++.+++. ...| +...|..+..++... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99976 468888899999999999 9999999999998 4455 678999999999988 999
Q ss_pred HHHHHHHHHHHhcCC---CCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 511 ELAEIVMENLVRFEP---EGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 511 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
++|...++++.+++| .++..|..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 89999999999999999999999999999753
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=5.7e-11 Score=104.59 Aligned_cols=161 Identities=14% Similarity=0.021 Sum_probs=95.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 474 (608)
..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 333444444444444444444444321 113334444555555555555555555555441 12234455555556666
Q ss_pred cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 047146 475 AGLIREALDLIKSM-PL-VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (608)
.|++++|.+.++++ .. +.+...+..+...+...|++++|...++++.+..|+++..+..++.+|...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666555 22 23556666677777777778888888887777777777777788888888888888888887
Q ss_pred HHHhCC
Q 047146 553 KMKERK 558 (608)
Q Consensus 553 ~m~~~~ 558 (608)
+..+..
T Consensus 169 ~~~~~~ 174 (186)
T 3as5_A 169 KANELD 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 776543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=2.8e-09 Score=105.65 Aligned_cols=193 Identities=12% Similarity=0.053 Sum_probs=102.6
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKC-------R----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE--P--DEVT 428 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~ 428 (608)
..+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3445555566666666555554321 1 1123444555666666666666666665543211 1 1234
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHH
Q 047146 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG-----CMVDLFGRAGLIREALDLIKSM-PLVPD-----AFVW 497 (608)
Q Consensus 429 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~ 497 (608)
+..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++. ...|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 55555666666777777766666654211111111111 2233355667777777776666 21221 2234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 498 GALLGACKIHAKVELAEIVMENLVRFEPEG------DGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..+...+...|++++|...++++.+..+.. ...+..++.+|...|+.++|...+++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555566666777777777777666543221 12455666667777777777777666643
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=1.4e-11 Score=118.80 Aligned_cols=238 Identities=12% Similarity=0.022 Sum_probs=147.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCC--------C---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------C
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPV--------K---NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL------G 320 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 320 (608)
+..++..+...|...|++++|..+|+++.. . ...++..+...|...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467889999999999999999999988753 2 2346888899999999999999999998764 2
Q ss_pred CCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChh
Q 047146 321 LKP-DDFTLVCVLNSCANIGWLELGKWVHTYLDKN------HI-NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392 (608)
Q Consensus 321 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 392 (608)
-.| ...++..+...+...|+++.|...+..+.+. +. +....+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------------------------ 155 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ------------------------------ 155 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH------------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH------------------------------
Confidence 222 3457778888899999999999999877653 11 112233
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhc------CCC
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQV------GIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVY------NLQ 459 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~ 459 (608)
+..+...+...|++++|+.+++++.+. +..|+ ..++..+...+...|++++|...++++.+.. ...
T Consensus 156 -~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 156 -LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344444444555555555555544432 11222 2355556666666666666666666665410 111
Q ss_pred CC-------hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 460 PQ-------TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 460 p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
+. ...+..+...+...+.+.+|...++.. ...| +..++..+..+|...|++++|...+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 112222333344445555566666665 2334 4567888889999999999999999999888764
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=4e-10 Score=103.25 Aligned_cols=204 Identities=12% Similarity=0.051 Sum_probs=160.9
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 047146 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIV 399 (608)
Q Consensus 323 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 399 (608)
.|...+......+...|++++|...+..+.+...+++...+..+..+|...|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999887656777777799999999999999999998763 35578899999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC---hhHHHHH
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEPD-E-------VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ---TEHYGCM 468 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 468 (608)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|.+.|+++.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999984 554 4 3577778888999999999999999976 4565 5678888
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 469 VDLFGRAGLIREALDLIKSM-P-LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
..+|...|+. .++++ . ...+...+.... ....+.+++|...++++.++.|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888766543 22332 1 122444444443 34567799999999999999999987777766654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=2.3e-10 Score=113.89 Aligned_cols=193 Identities=10% Similarity=0.035 Sum_probs=110.3
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhcCC-----C-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHH
Q 047146 363 GNALVDMYAKCGRIDQAFGVFRSMKC-----R-----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQV----GIEP-DEV 427 (608)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~ 427 (608)
+..+..+|...|+++.|...+++..+ + ...+++.+...|...|++++|++.|++..+. +-.+ ...
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34455555555555555554443321 1 1235556666666777777777766665542 1111 123
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhc---CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVY---NLQPQTEHYGCMVDLFGRAGLIREALDLIKSM----PL--VPD-AFVW 497 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~ 497 (608)
++..+..++...|++++|...+++..+.. +.+....++..+...|.+.|++++|...+++. .. .|. ...+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666667777777777777777765511 12223456667777777777777777777665 11 122 2334
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 498 GALLGACKIHAK---VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 498 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..+...+...++ +++|...+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455555666 55666555542 12233334666788888888888888888877753
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=9.7e-10 Score=96.57 Aligned_cols=166 Identities=12% Similarity=-0.005 Sum_probs=142.8
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
..+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456678888999999999999998874 366788899999999999999999999998852 335678888899999
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEI 515 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 515 (608)
..|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999873 3446788899999999999999999999987 3334 67889999999999999999999
Q ss_pred HHHHHHhcCCCCCc
Q 047146 516 VMENLVRFEPEGDG 529 (608)
Q Consensus 516 ~~~~~~~~~p~~~~ 529 (608)
.++++.+..|+++.
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 99999999888764
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=2.2e-09 Score=106.69 Aligned_cols=226 Identities=10% Similarity=0.018 Sum_probs=161.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHcC--C---C-CchhHHHH
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGL-KPD----DFTLVCVLNSCANIGWLELGKWVHTYLDKNH--I---N-TDGFIGNA 365 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~~ 365 (608)
...+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+....+.. . . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777655310 122 2355566666777777777777777665421 1 1 12446677
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKC-----RD----VYSYTAMIVGLAIHGKAWKALDIFSEMSQ-----VGIEPDEVTFVG 431 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 431 (608)
+..+|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 88888888999888888876542 22 34677888889999999999999998876 32 223567888
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhcCCCC---ChhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 047146 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQP---QTEHYGCMVDLFGRAGL---IREALDLIKSMPLVPD-AFVWGALLGAC 504 (608)
Q Consensus 432 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~ 504 (608)
+...+.+.|++++|...+++..+...-.+ ....+..+...|...|+ +.+|+..+++.+..|+ ...+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 88999999999999999999887432222 23456677777888888 8999999998754443 34666788889
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q 047146 505 KIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~ 523 (608)
...|++++|...++++.+.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=3.5e-08 Score=97.70 Aligned_cols=258 Identities=11% Similarity=-0.025 Sum_probs=118.7
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHh----HHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCch----HHHHHHHH
Q 047146 196 AYVKMDYPTEAILSFFDMCQANLRPDGM----ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV----FIHNALID 267 (608)
Q Consensus 196 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~----~~~~~li~ 267 (608)
.+...|++++|...+++........+.. ++..+...+...|+++.|...++...+..... ++. .++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHH
Confidence 3344555555555555544432111111 23333344445555555555555554431111 011 22344445
Q ss_pred HHHhcCChHHHHHHHccCC-------C---C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--ChHHHHHHH
Q 047146 268 MYLKCGNIPSARKVFDEMP-------V---K-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK--P--DDFTLVCVL 332 (608)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 332 (608)
.+...|++++|...+++.. . + ....+..+...+...|++++|...+++.....-. + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 5555555555555554432 1 1 1123344555556666666666666655442111 1 112344444
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCc--hhHHH----HHHHHhHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHH
Q 047146 333 NSCANIGWLELGKWVHTYLDKNHINTD--GFIGN----ALVDMYAKCGRIDQAFGVFRSMKCRD-------VYSYTAMIV 399 (608)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~ 399 (608)
..+...|+++.|...++........++ ..... ..+..+...|++++|...+++...++ ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 445555555555555555443211111 11111 22334556677777777776665422 113445556
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 400 GLAIHGKAWKALDIFSEMSQV----GIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.+...|++++|...+++.... |..++. .++..+..++...|+.++|...+.....
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666667777766666665432 111111 1334444455555666666655555543
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=8.5e-10 Score=104.37 Aligned_cols=221 Identities=12% Similarity=0.085 Sum_probs=148.9
Q ss_pred hccCChHHHHHHHHHHHHc-------CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-------C----ChhHHHHH
Q 047146 336 ANIGWLELGKWVHTYLDKN-------HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-------R----DVYSYTAM 397 (608)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 397 (608)
...|+++.|...++...+. ..+....++..+..+|...|++++|...|++... + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777666542 2233466778888899999999999988886641 1 24578888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhc-----CCCC-ChhH
Q 047146 398 IVGLAIHGKAWKALDIFSEMSQV------GIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVY-----NLQP-QTEH 464 (608)
Q Consensus 398 i~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 464 (608)
...|...|++++|+..+++.... .-.|+ ..++..+...+...|++++|...++++.+.. +..| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999988764 11233 3577888888999999999999999887721 1123 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-C---------CCC-CHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCC
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-P---------LVP-DAFVWGALLGACKIHAK------VELAEIVMENLVRFEPEG 527 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p-~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~ 527 (608)
+..+..+|.+.|++++|.+.++++ . ..+ ....|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 788889999999999999888776 1 122 22233333333333222 223333333322233445
Q ss_pred CchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 528 DGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...+..++.+|.+.|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56889999999999999999999999875
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=1.9e-08 Score=94.06 Aligned_cols=238 Identities=12% Similarity=0.031 Sum_probs=101.8
Q ss_pred HHhcCChHHHHHHHccCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHH
Q 047146 269 YLKCGNIPSARKVFDEMPVKNVV-SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347 (608)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 347 (608)
..-.|++..++.-...+.+.+.. .-.-+.++|...|+++.. ..-.|....+..+.. |...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HHHH
Confidence 34467777776655555432222 222344666666665531 011222222222222 22211 3344
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047146 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422 (608)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 422 (608)
++.+...+ .++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 44433333 22233333445555555555555555554421 1233444445555555555555555555554 2
Q ss_pred CC-----CHHHHHHHHHH--Hhccc--cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC--
Q 047146 423 EP-----DEVTFVGVLSA--CSHAG--LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PL-- 490 (608)
Q Consensus 423 ~p-----~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 490 (608)
.| +..+...+..+ ....| +.++|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44 23333344333 11122 455555555555331 222111122222445555555555554433 11
Q ss_pred --------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 491 --------VP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 491 --------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.| |+.++..++......|+ +|.++++++.+..|+++
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 12 33333334333333444 44555555555555554
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=9.6e-09 Score=96.13 Aligned_cols=204 Identities=11% Similarity=0.030 Sum_probs=129.0
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-D---VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI-EPD-EVTFV 430 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~ 430 (608)
+...+-.+...+.+.|++++|...|+.+.. | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344555566666677777777777776653 2 2 34566666667777777777777777666311 112 23455
Q ss_pred HHHHHHhc--------cccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 047146 431 GVLSACSH--------AGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501 (608)
Q Consensus 431 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 501 (608)
.+..++.. .|++++|...|+++.+. .|+ ......+.......+.. ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55555655 67777777777766653 222 22222211111000000 11245667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhC----------CChHHHHHHHHHHHhCCCccCCceeEE
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGD---GAYILMTNIYSSK----------NRWKEALKLRKKMKERKVKKTPGCSLV 568 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~ 568 (608)
..+...|++++|...++++++..|+++ ..+..++.+|... |++++|...++++.+..+
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 889999999999999999999999854 4788999999877 899999999999986432
Q ss_pred EECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhh
Q 047146 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603 (608)
Q Consensus 569 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 603 (608)
.+|........+.++...+++
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 234445667777777766654
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.07 E-value=8.2e-10 Score=117.75 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=138.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLS 434 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 434 (608)
+...++.|..+|.+.|++++|++.|++..+ .+...|+.+..+|.+.|++++|+..|++..+ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 466778888999999999999999987652 4578899999999999999999999999988 4665 568999999
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVE 511 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 511 (608)
++...|++++|++.|+++.+ +.| +...|..+..+|.+.|++++|++.|++. .+.| +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999987 345 5788999999999999999999999987 5566 5778889999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 047146 512 LAEIVMENLVRFEP 525 (608)
Q Consensus 512 ~a~~~~~~~~~~~p 525 (608)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887643
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=2.8e-10 Score=96.41 Aligned_cols=120 Identities=11% Similarity=-0.013 Sum_probs=73.4
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAK 509 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 509 (608)
...+...|++++|+..+..... ..| +...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3344555666666666665543 233 2334455666666777777777766665 4444 55666666666777777
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHH-HHHHH
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL-RKKMK 555 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~ 555 (608)
+++|...++++++++|+++.+|..++.+|.+.|++++|.+. +++..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77777777777777777776777777777777776655543 35554
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=4.1e-09 Score=100.51 Aligned_cols=216 Identities=11% Similarity=-0.022 Sum_probs=114.1
Q ss_pred ChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-hHHHHHHHHHHhccCChHHHHHHH
Q 047146 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL----GLKPD-DFTLVCVLNSCANIGWLELGKWVH 348 (608)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 348 (608)
++++|...|++ ....|...|++++|+..|.+..+. |-+++ ..++..+...+...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36777666544 366677778888888777766542 11111 234444444444444554444444
Q ss_pred HHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC--
Q 047146 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH-GKAWKALDIFSEMSQVGIEPD-- 425 (608)
Q Consensus 349 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~-- 425 (608)
....+. +...|+...+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~ 152 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQ 152 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTT
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCC
Confidence 433221 1111222111 23455666666664 7777777777766552 111
Q ss_pred -----HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 047146 426 -----EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT-----EHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA 494 (608)
Q Consensus 426 -----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 494 (608)
..++..+...+...|++++|...|+++.+...-.+.. ..|..+..++...|++++|+..+++. .+.|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2356666667777777777777777776521111111 14556666677777777777777766 444432
Q ss_pred H------HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCC
Q 047146 495 F------VWGALLGACK--IHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 495 ~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
. .+..++.++. ..+++++|...++++.+++|...
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 1 2333444443 34556666666666666655443
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=1.5e-08 Score=92.37 Aligned_cols=181 Identities=13% Similarity=0.017 Sum_probs=117.9
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHH
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMKC--RD----VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV----TFV 430 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~ 430 (608)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444566677778888888888887652 32 245666777788888888888888887774 44321 333
Q ss_pred HHHHHHhc------------------cccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 047146 431 GVLSACSH------------------AGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSMPLV 491 (608)
Q Consensus 431 ~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 491 (608)
.+..++.. .|+.++|...|+.+.+. .|+ ...+.+...... .....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH---------
Confidence 34444433 35566666666666542 222 222211111000 00000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD---GAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
......+...+...|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00112455678899999999999999999999986 568999999999999999999999998876544
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=6.7e-09 Score=85.60 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=74.8
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PL-VPDAFVWGALLGACKIHA 508 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~ 508 (608)
.+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|.+.++++ .. ..+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3344444445555555554444431 1123344444555555555555555555554 11 224556666666777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 509 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
++++|...++++.+..|.++..+..++.+|.+.|++++|...++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777777777777777777653
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=2.9e-09 Score=101.55 Aligned_cols=201 Identities=10% Similarity=-0.027 Sum_probs=146.2
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHH
Q 047146 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RD----VYSYTAMIVGLAIHGKAWKA 410 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A 410 (608)
+++.|...+..+ ...|...|++++|...|.+... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777654 4567788999999888876542 12 46788899999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-ccHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHH
Q 047146 411 LDIFSEMSQVGI---EPD--EVTFVGVLSACSHA-GLVEEGCKHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIRE 480 (608)
Q Consensus 411 ~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 480 (608)
+..+++..+... .+. ..++..+...+... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998875311 111 34788888899996 9999999999998773211111 3568889999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hCCCh
Q 047146 481 ALDLIKSM-PLVPD---A-----FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA-----YILMTNIYS--SKNRW 544 (608)
Q Consensus 481 A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 544 (608)
|+..+++. ...|+ . ..|..+..++...|++++|...+++++++.|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 33332 1 156777788899999999999999999999986543 445666665 45778
Q ss_pred HHHHHHHHHHH
Q 047146 545 KEALKLRKKMK 555 (608)
Q Consensus 545 ~~A~~~~~~m~ 555 (608)
++|+..++++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888886553
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=3.6e-08 Score=92.16 Aligned_cols=162 Identities=10% Similarity=0.003 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-----ChhHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-----QTEHY 465 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~ 465 (608)
.++..+..++...|++++|++++.+....|..++ ...+..++..+.+.|+.+.|.+.++.|.+ ..| +..+.
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l 177 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHH
Confidence 3334444555555555555555555444322122 23444445555555555555555555543 233 12333
Q ss_pred HHHHHHH--Hh--cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCCCCch
Q 047146 466 GCMVDLF--GR--AGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF----------EPEGDGA 530 (608)
Q Consensus 466 ~~l~~~~--~~--~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~p~~~~~ 530 (608)
..|+.++ .. .++..+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+. +|+++.+
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~ 257 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF 257 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence 3333331 11 22555555555555 22333222223333455555555555555544443 2445555
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 531 YILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+..++.+....|+ +|.++++++.+..
T Consensus 258 LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 258 LANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5444444444454 4555555555433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=1.1e-08 Score=95.64 Aligned_cols=202 Identities=11% Similarity=-0.033 Sum_probs=143.9
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CC----hhHH
Q 047146 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT--DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RD----VYSY 394 (608)
Q Consensus 323 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~ 394 (608)
.+...+......+...|+++.|...+..+++..... ....+..+..+|.+.|++++|...|++..+ |+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 455667777888899999999999999998875322 156778899999999999999999998763 31 3467
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHH
Q 047146 395 TAMIVGLAI--------HGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465 (608)
Q Consensus 395 ~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 465 (608)
..+..++.. .|++++|+..|+++.+. .|+.. ....+.. +...... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH-----HHHHH
Confidence 777888888 99999999999999984 56542 2222111 1111110 01125
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCCc-
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGACKIH----------AKVELAEIVMENLVRFEPEGDG- 529 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~- 529 (608)
..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56778888999999999988887 33343 34666677777755 8999999999999999999863
Q ss_pred --hHHHHHHHHHhCCChH
Q 047146 530 --AYILMTNIYSSKNRWK 545 (608)
Q Consensus 530 --~~~~l~~~~~~~g~~~ 545 (608)
++..+..++.+.++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 3444555554444443
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=7.1e-10 Score=93.90 Aligned_cols=139 Identities=8% Similarity=-0.024 Sum_probs=102.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCC
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGL 477 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 477 (608)
.+...|++++|+..+++... ..|+. ..+..+...|.+.|++++|++.|+++.+ +.| +...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 34455666777777776654 23432 3555667777777888888877777766 234 56777778888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 478 IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEI-VMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
+++|+..|++. .+.| +...|..+...+.+.|++++|.. .++++++++|+++.+|.....++.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888776 4556 57788888889999999876655 5699999999999999999999888875
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=1.5e-08 Score=95.59 Aligned_cols=164 Identities=13% Similarity=0.048 Sum_probs=101.7
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKC-------R----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQV------GI 422 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~ 422 (608)
..++..+..+|...|++++|.+.|++... + ....+..+...|...|++++|+..+++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455666666666776666666665431 1 2356677777888888888888888887663 11
Q ss_pred CCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhc------CCCC-ChhHHHHHHHHHHhcC------CHHHHHHHHHhC
Q 047146 423 EPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVY------NLQP-QTEHYGCMVDLFGRAG------LIREALDLIKSM 488 (608)
Q Consensus 423 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~ 488 (608)
.|+ ..++..+...+...|++++|...++++.+.. ...+ ....|..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 333 3477788888889999999999888887621 1122 2334444444443322 344555555555
Q ss_pred C-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 489 P-LVP-DAFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 489 ~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
. ..| ...++..+...+...|++++|...++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 223 3457788889999999999999999998765
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=1.3e-08 Score=96.67 Aligned_cols=175 Identities=9% Similarity=-0.018 Sum_probs=139.7
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.+.....+......+...+..+...+.+.|++++|...|++..+. .| +...+..+...+...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 334445555555455566777888889999999999999999884 56 456888888899999999999999998866
Q ss_pred hcCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--Cc
Q 047146 455 VYNLQPQTEHYGC-MVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG--DG 529 (608)
Q Consensus 455 ~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~ 529 (608)
..|+...... ....+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ ..
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3455443332 333466777888888888877 4455 67889999999999999999999999999999998 77
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 530 AYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.+..++.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999999988764
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=3.2e-08 Score=81.41 Aligned_cols=132 Identities=13% Similarity=0.162 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 472 (608)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677778888888888888888887753 235567777788888888888888888888762 233566778888888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 473 GRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 8899999998888877 3333 67788888888999999999999999998888763
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=3.5e-09 Score=113.46 Aligned_cols=164 Identities=10% Similarity=-0.063 Sum_probs=84.5
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 047146 336 ANIGWLELGKWVHTYLD--------KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIH 404 (608)
Q Consensus 336 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 404 (608)
...|++++|.+.++.+. +. .+.+...+..+..+|...|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45555666666655554 21 123344455555555555666666655555442 2445555555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHH
Q 047146 405 GKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREAL 482 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 482 (608)
|++++|+..|++..+. .|+ ...+..+..++...|++++ .+.|+++.+ ..| +...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666555552 332 3355555555555555555 555555544 123 3445555555555555565555
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHH
Q 047146 483 DLIKSM-PLVPD-AFVWGALLGACKI 506 (608)
Q Consensus 483 ~~~~~~-~~~p~-~~~~~~l~~~~~~ 506 (608)
+.|+++ ...|+ ...|..+..++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHc
Confidence 555555 44443 2344444444433
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=7.3e-09 Score=87.23 Aligned_cols=102 Identities=9% Similarity=-0.069 Sum_probs=90.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 047146 457 NLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533 (608)
Q Consensus 457 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 533 (608)
.+.| +...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++.+++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4556 4567888889999999999999999988 4555 78899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 534 MTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
++.+|.+.|++++|+..|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998643
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=1.4e-08 Score=82.79 Aligned_cols=94 Identities=11% Similarity=0.088 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 540 (608)
..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555666666666666666666665 3334 556666666677777777777777777777777777777777777777
Q ss_pred CCChHHHHHHHHHHHh
Q 047146 541 KNRWKEALKLRKKMKE 556 (608)
Q Consensus 541 ~g~~~~A~~~~~~m~~ 556 (608)
.|++++|++.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777776653
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=9.8e-09 Score=89.56 Aligned_cols=155 Identities=10% Similarity=0.014 Sum_probs=92.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHH-HHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL-FGR 474 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 474 (608)
+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++.+... .|+...+..+... +..
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 334444455555555555544442 33 2234444455555555555555555554431 1222221111111 111
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhCCChHHHHHH
Q 047146 475 AGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG--DGAYILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~ 550 (608)
.+...+|++.+++. ...| +...+..+...+...|++++|...++++++..|+. +..+..++.+|...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 11222345555554 3345 57788888888999999999999999999998875 45888999999999999999999
Q ss_pred HHHHHh
Q 047146 551 RKKMKE 556 (608)
Q Consensus 551 ~~~m~~ 556 (608)
+++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=2.7e-08 Score=104.59 Aligned_cols=159 Identities=9% Similarity=0.015 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHH
Q 047146 373 CGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKH 448 (608)
Q Consensus 373 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 448 (608)
.|++++|.+.|++..+ .+...|..+...+...|++++|++.+++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998764 35688999999999999999999999999984 55 466888999999999999999999
Q ss_pred HHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhc
Q 047146 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIH---AKVELAEIVMENLVRF 523 (608)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 523 (608)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 2335788999999999999999999999988 4445 677888899999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 047146 524 EPEGDGAYILMT 535 (608)
Q Consensus 524 ~p~~~~~~~~l~ 535 (608)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988887776
No 104
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=5.1e-06 Score=84.86 Aligned_cols=203 Identities=11% Similarity=-0.073 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHH-HHHHhh
Q 047146 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA-FGVFRS 385 (608)
Q Consensus 307 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~ 385 (608)
+.+..+|+++.... +.+...|...+.-+...|+.+.|..+++...+. +.+...+.. |....+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 34667888877753 445666777777777888899999999988887 334333322 2222111111 112221
Q ss_pred cC------------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc-cHHHHHHHHHHh
Q 047146 386 MK------------CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG-LVEEGCKHFLDM 452 (608)
Q Consensus 386 ~~------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~ 452 (608)
.. ......|...+....+.+..+.|..+|++. .. ..++...|......-...+ +.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 011245777777777788899999999998 32 1234445543332222233 699999999999
Q ss_pred HhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 453 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
.+.++ .+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 347 l~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88532 234566778888889999999999999983 3577888888888888999999998888874
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=3e-07 Score=82.70 Aligned_cols=162 Identities=9% Similarity=-0.108 Sum_probs=129.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc----cHHHHHHHHHHhHhhcCCCCChhH
Q 047146 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG----LVEEGCKHFLDMSRVYNLQPQTEH 464 (608)
Q Consensus 389 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 464 (608)
.+...+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|.++|++..+ ..+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHH
Confidence 466777778888888888888888888888764 55667777777777 6 89999999998876 235667
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHH
Q 047146 465 YGCMVDLFGR----AGLIREALDLIKSM-PLVPD---AFVWGALLGACKI----HAKVELAEIVMENLVRFEPEGDGAYI 532 (608)
Q Consensus 465 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 532 (608)
+..|...|.. .+++++|+++|++. ...|. +..+..|...|.. .+++++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7788888877 78999999999887 44443 6788888888888 88999999999999888 66667889
Q ss_pred HHHHHHHhC-C-----ChHHHHHHHHHHHhCCC
Q 047146 533 LMTNIYSSK-N-----RWKEALKLRKKMKERKV 559 (608)
Q Consensus 533 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 559 (608)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999887664
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=2.2e-07 Score=84.61 Aligned_cols=185 Identities=12% Similarity=-0.014 Sum_probs=132.7
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CCh----hHHH
Q 047146 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT--DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDV----YSYT 395 (608)
Q Consensus 324 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~ 395 (608)
+...+..+...+...|+++.|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455666777889999999999999998865322 245677889999999999999999998763 332 2455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhc
Q 047146 396 AMIVGLAI------------------HGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVY 456 (608)
Q Consensus 396 ~li~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 456 (608)
.+..++.. .|++++|+..|+++.+. .|+.. ....... .+. +......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l~~------~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----LVF------LKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----HHH------HHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----HHH------HHHHHHH--
Confidence 55555554 57899999999999984 66653 2222111 110 1111111
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 457 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
....+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|++++|...++.+....|++..
T Consensus 149 -------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 -------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 2235678889999999999999987 44453 246778889999999999999999999998888764
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=1.2e-07 Score=90.97 Aligned_cols=220 Identities=11% Similarity=0.028 Sum_probs=149.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 047146 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382 (608)
Q Consensus 303 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 382 (608)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 466777887777665531 111 0 11135666666665543 4566677888877777
Q ss_pred HhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccccHHHHHHH
Q 047146 383 FRSMKC-----RD----VYSYTAMIVGLAIHGKAWKALDIFSEMSQVG---IEPD--EVTFVGVLSACSHAGLVEEGCKH 448 (608)
Q Consensus 383 ~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 448 (608)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...+.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 765542 11 3467788888999999999999998876531 1222 2477788888888 999999999
Q ss_pred HHHhHhhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 047146 449 FLDMSRVYNLQP----QTEHYGCMVDLFGRAGLIREALDLIKSM-PL---VPD----AFVWGALLGACKIHAKVELAEIV 516 (608)
Q Consensus 449 ~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~ 516 (608)
|++..+...-.. ...++..+...|.+.|++++|++.|++. .+ .++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998876321111 1467888999999999999999999887 21 122 23566666777888999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHHHhCCChHHHHHH
Q 047146 517 MENLVRFEPEGDGA-----YILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 517 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 550 (608)
+++++ ..|..... ...++..+ ..|+.+.+..+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88876533 34555555 56776666553
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=1.2e-07 Score=90.02 Aligned_cols=131 Identities=11% Similarity=-0.025 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-
Q 047146 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALL- 501 (608)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~- 501 (608)
+...+..+...+...|++++|...|+++.+. .| +...+..+..++.+.|++++|...++++ ...|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3456777888899999999999999999873 45 5788899999999999999999999998 5567765444433
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..+...++.+.|...++++.+..|+++..+..++.+|...|++++|...++++.+..
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 336677888889999999999999999999999999999999999999999998644
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=1e-07 Score=85.57 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=102.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTA----------------MIVGLAIHGKAWKALDIFSEMSQVGIEP 424 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~~~~~~A~~~~~~m~~~g~~p 424 (608)
......+...|++++|...|++... | +...|.. +..+|...|++++|+..|++..+. .|
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--AP 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CC
Confidence 3344566777888888888887653 2 3345555 677777888888888888887773 45
Q ss_pred -CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCH--HHHH
Q 047146 425 -DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGL--IREALDLIKSMPLVPDA--FVWG 498 (608)
Q Consensus 425 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~ 498 (608)
+...+..+..++...|++++|...|+++.+ +.| +...+..+..+|...|+ .+.+...++... .|++ ..+.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ 161 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARY 161 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHH
Confidence 445777777778888888888888887776 234 46677777777665543 334455555552 3333 2333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
....++...|++++|+..+++++++.|++
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 34455566777888888888888877764
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=2.1e-07 Score=99.60 Aligned_cols=166 Identities=11% Similarity=-0.055 Sum_probs=90.2
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047146 301 THRGQFKEALDIFRRMQ--------GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372 (608)
Q Consensus 301 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 372 (608)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45566666666666655 221 2233445555555666666666666666655543 2334455555566666
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHH
Q 047146 373 CGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKH 448 (608)
Q Consensus 373 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 448 (608)
.|++++|.+.|++..+ .+...|..+..+|.+.|++++ +..|++..+. .| +...+..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665431 244555666666666666666 6666666552 33 334555556666666666666666
Q ss_pred HHHhHhhcCCCCC-hhHHHHHHHHHHh
Q 047146 449 FLDMSRVYNLQPQ-TEHYGCMVDLFGR 474 (608)
Q Consensus 449 ~~~~~~~~~~~p~-~~~~~~l~~~~~~ 474 (608)
|+++.+ +.|+ ...+..+..++..
T Consensus 557 ~~~al~---l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPP---TSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCT---TSTTHHHHHHHHHHHTC-
T ss_pred HHhhcc---cCcccHHHHHHHHHHHHc
Confidence 665543 3343 3445555555544
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=2.7e-08 Score=83.76 Aligned_cols=100 Identities=11% Similarity=-0.028 Sum_probs=82.4
Q ss_pred CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 458 LQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 458 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 344 4566777788888888888888888877 3444 677888888888899999999999999999999998899999
Q ss_pred HHHHHhCCChHHHHHHHHHHHhC
Q 047146 535 TNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+.+|...|++++|.+.+++..+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999888653
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.77 E-value=5.1e-08 Score=79.46 Aligned_cols=114 Identities=12% Similarity=0.025 Sum_probs=93.7
Q ss_pred CCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047146 422 IEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWG 498 (608)
Q Consensus 422 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 498 (608)
+.|+. ..+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 45543 36777788888889999999999888772 2335778888889999999999999988887 4445 677899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 537 (608)
.+..++...|++++|...++++++++|+++.++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999888777654
No 113
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.76 E-value=9.5e-08 Score=85.79 Aligned_cols=154 Identities=12% Similarity=0.050 Sum_probs=72.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHhccccHHHHHHHHHHhHhhcCCCC
Q 047146 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVG----------------VLSACSHAGLVEEGCKHFLDMSRVYNLQP 460 (608)
Q Consensus 398 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 460 (608)
...+...|++++|+..|++..+ ..|+. ..+.. +..++...|++++|...|++..+. .|
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p 85 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---AP 85 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CC
Confidence 3344555555555555555555 23432 23434 455555555555555555555541 23
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 461 -QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAK--VELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 461 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
+...+..+..+|...|++++|++.|++. ...| +...|..+...+...|+ .+.+...++++....|.. ..+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHHH
Confidence 3455555555555555555555555555 3333 34455555544443332 222333333332211111 1233445
Q ss_pred HHHHhCCChHHHHHHHHHHHhC
Q 047146 536 NIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.++...|++++|+..+++..+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 5555555555555555555543
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.76 E-value=1.2e-07 Score=99.81 Aligned_cols=145 Identities=9% Similarity=-0.064 Sum_probs=80.4
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 047146 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~ 415 (608)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666665543 23455566666667777777777777765542 245566666666777777777777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 047146 416 EMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA---GLIREALDLIKSM 488 (608)
Q Consensus 416 ~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 488 (608)
+..+. .| +...+..+..++...|++++|.+.++++.+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 76663 33 3446666666677777777777777766652 122455666666666666 6777777666665
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=6.8e-08 Score=92.69 Aligned_cols=197 Identities=11% Similarity=-0.010 Sum_probs=149.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 047146 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416 (608)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 416 (608)
..|++++|.+++....+.... . .+...++++.|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356778888888877654221 0 11115888998888765 35678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCC--CC--ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047146 417 MSQV----GIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL--QP--QTEHYGCMVDLFGRAGLIREALDLIKS 487 (608)
Q Consensus 417 m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (608)
..+. |-.+. ..+|..+...|...|++++|...|++..+...- .+ ...++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 11111 247888888999999999999999988763211 11 14577888999988 999999999988
Q ss_pred C-CCCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhCCChHHHHHHHHH
Q 047146 488 M-PLVP---D----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD------GAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 488 ~-~~~p---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
. .+.| + ..++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 2111 1 45788888999999999999999999999866543 2677788889999999999999999
Q ss_pred HH
Q 047146 554 MK 555 (608)
Q Consensus 554 m~ 555 (608)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=2.3e-07 Score=83.46 Aligned_cols=131 Identities=15% Similarity=-0.038 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 471 (608)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++...+. .+.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34556677788888888888888876 3567778888888888888888888888888773 23356778888888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 472 FGRAGLIREALDLIKSM-PLVP-----------------DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
|...|++++|++.+++. ...| ....+..+..++...|++++|...++++.+..|++.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 88888888888888876 2222 225777777888888888888888888888888763
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=2.5e-06 Score=81.10 Aligned_cols=161 Identities=10% Similarity=-0.020 Sum_probs=118.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hhHHH
Q 047146 396 AMIVGLAIHGKAWKALDIFSEMSQVGI-EPDEV----TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TEHYG 466 (608)
Q Consensus 396 ~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 466 (608)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...+..+.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999988876421 22211 2334566677778999999999988772122223 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-----CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CchH
Q 047146 467 CMVDLFGRAGLIREALDLIKSM-----PL---VP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG------DGAY 531 (608)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 531 (608)
.+...|...|++++|+..++++ .. .+ ...++..+...|...|++++|...++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8899999999999998888876 11 11 22377788899999999999999999999875332 4579
Q ss_pred HHHHHHHHhCCC-hHHHHHHHHHHHh
Q 047146 532 ILMTNIYSSKNR-WKEALKLRKKMKE 556 (608)
Q Consensus 532 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 556 (608)
..++.+|.+.|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988853
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.69 E-value=2.5e-06 Score=80.55 Aligned_cols=224 Identities=11% Similarity=0.016 Sum_probs=99.1
Q ss_pred hcCC-hhHHHHHHHHHHhCCCCCChHH-HHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHh----Hhc
Q 047146 302 HRGQ-FKEALDIFRRMQGLGLKPDDFT-LVCVLNSCANIG--WLELGKWVHTYLDKNHINTDGFIGNALVDMY----AKC 373 (608)
Q Consensus 302 ~~g~-~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 373 (608)
+.|. .++|++++++++.. .|+..| ++.--..+...+ +++++...++.++..+.+ +..+++.--.++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 4444 45788888877774 454433 333334444444 566666666655554422 222222222222 222
Q ss_pred ---CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc----
Q 047146 374 ---GRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAW--KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL---- 441 (608)
Q Consensus 374 ---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 441 (608)
+++++++++++.+. .+|..+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 45555555555443 234445555555555555554 5555555555532 1133344444444444443
Q ss_pred --HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCHHHH
Q 047146 442 --VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE-ALDLIKSM-PL----VPDAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 442 --~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a 513 (608)
++++.+.+..+... -+-|...|+.+...+.+.|+..+ +.++.++. .. ..++..+..+...+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 44444444444431 11234444444444444444222 22333333 11 11333444444444444444444
Q ss_pred HHHHHHHHh-cCCCCCchH
Q 047146 514 EIVMENLVR-FEPEGDGAY 531 (608)
Q Consensus 514 ~~~~~~~~~-~~p~~~~~~ 531 (608)
.++++.+.+ .+|.....|
T Consensus 278 ~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHhccChHHHHHH
Confidence 444444443 344443333
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=7e-07 Score=84.93 Aligned_cols=163 Identities=9% Similarity=-0.015 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccccHHHHHHHHHHhHhhcCC--CCC--hh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-----VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL--QPQ--TE 463 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~ 463 (608)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+.+..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455667788899999999999888774322111 12334555677888999999999888752111 111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----C
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM----PLVPD-----AFVWGALLGACKIHAKVELAEIVMENLVRFEPE--G----D 528 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~----~ 528 (608)
+++.+...|...|++++|+..++++ ...|+ ..++..+...|...|++++|...++++++..+. + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999988876 11222 257888889999999999999999999876432 1 3
Q ss_pred chHHHHHHHHHhCCChHHH-HHHHHHHH
Q 047146 529 GAYILMTNIYSSKNRWKEA-LKLRKKMK 555 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 555 (608)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788999999999999999 77787765
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=2.2e-07 Score=80.80 Aligned_cols=154 Identities=12% Similarity=-0.007 Sum_probs=112.6
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhcc
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA-CSHA 439 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~ 439 (608)
..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..+++.... .|+.......... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 4566677888999999999988774 35677888888899999999999999887764 4444333222111 1222
Q ss_pred ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 047146 440 GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD---AFVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 440 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~ 514 (608)
+....|...+++..+ ..| +...+..+..++...|++++|.+.++++ ...|+ ...+..+...+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 233346777877766 345 5788888999999999999999999887 55554 557888888899999999999
Q ss_pred HHHHHHHh
Q 047146 515 IVMENLVR 522 (608)
Q Consensus 515 ~~~~~~~~ 522 (608)
..+++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=3e-06 Score=86.57 Aligned_cols=374 Identities=9% Similarity=-0.054 Sum_probs=219.6
Q ss_pred cC-CcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCC-chHHH
Q 047146 130 SQ-SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY-PTEAI 207 (608)
Q Consensus 130 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~ 207 (608)
.| ++..|+.+++.++..- |. |+++.+..+|+..... .|++..|..-+....+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 35 3677777777776632 22 8999999999996663 3688888888877776653 45667
Q ss_pred HHHHHHHHC-CCCC-CHhHHHHHHHHhhc----cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 047146 208 LSFFDMCQA-NLRP-DGMILVIVLSACSK----LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281 (608)
Q Consensus 208 ~~~~~m~~~-~~~p-~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 281 (608)
.+|+..... |..| +...|...+..+.. .++.+.+..+|+.++.. +...-...|......-.. .....+.++
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~-~~~~~~~~~ 145 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELE-LNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHH-hccccHHHH
Confidence 788777653 4333 55677777776543 45678888899988874 221122233333222111 112222222
Q ss_pred HccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc--CC-----hHHHHHHHHHHHHc
Q 047146 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI--GW-----LELGKWVHTYLDKN 354 (608)
Q Consensus 282 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~ 354 (608)
. .... +.+..|..+++++...--..+...|...+.--... +- .+.+..+++.++..
T Consensus 146 ~---------------~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~ 208 (493)
T 2uy1_A 146 V---------------GDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208 (493)
T ss_dssp H---------------HHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred H---------------HHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc
Confidence 2 2111 23344444454443210001223444433332221 11 34566788887775
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CC
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-RDV-YSYTAMIVGLAIHGKAWKALDIFSEMSQVG---------IE 423 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---------~~ 423 (608)
. +.+..+|...+..+.+.|+++.|..++++... |+. ..|. .|......++. ++.+.+.- ..
T Consensus 209 ~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 209 F-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp T-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhh
Confidence 4 45577888888888899999999999986442 322 2232 23222121222 33332210 01
Q ss_pred C---CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHH
Q 047146 424 P---DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG-LIREALDLIKSM-PLVP-DAFVW 497 (608)
Q Consensus 424 p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~ 497 (608)
+ ....|...+....+.++.+.|..+|.++ +.. ..+...|...+..-.+.+ +.+.|..+|+.. ...| ++..|
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence 1 1235666677777788899999999998 421 124445543333333334 699999999887 2123 45566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...+......|+.+.|+.+++++ +.....|...+..-...|+.+.+.++++++.+
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777778899999999999998 33456788888877888999999998888863
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=1.2e-06 Score=78.80 Aligned_cols=130 Identities=8% Similarity=-0.037 Sum_probs=110.0
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 443 (608)
..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 4566778899999999999999998899999999999999999999999999998852 335668889999999999999
Q ss_pred HHHHHHHHhHhhcC-------------CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 047146 444 EGCKHFLDMSRVYN-------------LQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA 494 (608)
Q Consensus 444 ~a~~~~~~~~~~~~-------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 494 (608)
+|.+.|+.+.+... ..| ....+..+..+|.+.|++++|.+.+++. ...|+.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999987211 111 2378889999999999999999999988 666754
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.9e-07 Score=76.10 Aligned_cols=119 Identities=15% Similarity=0.062 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++.+|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667777888888888888888877 3344 67788888889999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 047146 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600 (608)
Q Consensus 540 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 600 (608)
..|++++|...+++..+..... ...|.+..+...+..+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~--------------------~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEV--------------------NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHH--------------------HTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCccc--------------------CCchhHHHHHHHHHHHHHh
Confidence 9999999999999887543211 2347777777777766544
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.64 E-value=3e-07 Score=76.69 Aligned_cols=97 Identities=11% Similarity=-0.115 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455666777888888888888888877 3344 6778888888888999999999999999999999988899999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 047146 539 SSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 539 ~~~g~~~~A~~~~~~m~~~ 557 (608)
...|++++|.+.+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888753
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=5.1e-07 Score=77.36 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=93.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACK 505 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 505 (608)
.+..+...+...|++++|...|....+. .+.+...+..+...+...|++++|++.+++. ...| +...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555556666777777777777776652 2234666777777777778888887777776 3334 5677888888899
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHH--HHHHHhCCChHHHHHHHHHHH
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILM--TNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..|++++|...++++.+..|.+...+..+ +..+.+.|++++|.+.+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999999988777444 444788899999999988775
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=7.6e-07 Score=71.82 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLV-PDAFVWGALLGAC 504 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 504 (608)
..+..+...+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|..+++++ ... .+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45566666666777777777777776652 2234556667777777777777777777766 222 3667777888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 047146 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 542 (608)
...|++++|...++++.+..|+++..+..++.++.+.|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888988888888888888888888877776543
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=2.8e-07 Score=89.49 Aligned_cols=94 Identities=13% Similarity=-0.006 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...+++++++.|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 357788888888999999999888887 4445 67888899999999999999999999999999999999999999999
Q ss_pred hCCChHHH-HHHHHHHH
Q 047146 540 SKNRWKEA-LKLRKKMK 555 (608)
Q Consensus 540 ~~g~~~~A-~~~~~~m~ 555 (608)
+.|++++| ..++++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 45666664
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.58 E-value=1.4e-07 Score=82.26 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=56.8
Q ss_pred cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--HHH
Q 047146 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGA-CKIHAKV--ELA 513 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~~a 513 (608)
.|++++|...++...+. .+.+...|..+...|...|++++|...+++. ...| +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444454444444431 1123344455555555555555555555544 2222 34444444444 4455555 555
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...++++++..|.++..+..++.+|...|++++|...+++..+
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555554
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=7.2e-07 Score=72.66 Aligned_cols=116 Identities=8% Similarity=-0.033 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGAC 504 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 504 (608)
..+..+...+...|++++|...++++... .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45556666677777777777777777652 2234566777777777778888887777766 3334 567788888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCh
Q 047146 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 544 (608)
...|++++|...++++.+..|+++..+..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999888888888888888765
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=7.3e-07 Score=73.02 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACK 505 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 505 (608)
.+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|++.+++. ...| +...+..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4444444455555555555555554431 1113344444444444555555555444444 2122 3344444444444
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 541 (608)
..|++++|...++++.+..|.+...+..++.++.+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 555555555555555544444444444444444433
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=1.4e-07 Score=89.14 Aligned_cols=188 Identities=8% Similarity=-0.070 Sum_probs=126.2
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMK--C-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSA 435 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~ 435 (608)
...+..+...+.+.|++++|...|++.. . .+...|..+...|...|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4455667777788888888888887664 2 36677888888888888888888888888774 55 45577888888
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQP---QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 512 (608)
+...|++++|...|..+.+...-.+ ....+..+ ...+...+.. .......++......+.. + ..|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 8888999999888888766211111 11112111 1122212221 122222334444333322 2 3688999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhC-CChHHHHHHHHHHHhC
Q 047146 513 AEIVMENLVRFEPEGDGAYILMTNIYSSK-NRWKEALKLRKKMKER 557 (608)
Q Consensus 513 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 557 (608)
|.+.++++.+..|++......+...+.+. +.+++|.++|++..+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998877777777777777 7789999999988653
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=7.8e-07 Score=72.83 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
...+..+...+.+.|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 444555555555666666666655554 3333 44555555555555566666666666666655555555556666666
Q ss_pred hCCChHHHHHHHHHHHh
Q 047146 540 SKNRWKEALKLRKKMKE 556 (608)
Q Consensus 540 ~~g~~~~A~~~~~~m~~ 556 (608)
+.|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666666655544
No 133
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.55 E-value=5.9e-05 Score=71.16 Aligned_cols=211 Identities=12% Similarity=0.109 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHH----HHc---CChH
Q 047146 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG--RIDQAFGVFRSMKC---RDVYSYTAMIVGL----AIH---GKAW 408 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---~~~~ 408 (608)
.++|......++..+ +.+..+++.--.++...| +++++++.++.+.. .+..+|+.--..+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 356777777777665 334556676677777777 89999999987763 4556777765555 555 7888
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHH--HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC------HH
Q 047146 409 KALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVE--EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL------IR 479 (608)
Q Consensus 409 ~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~ 479 (608)
+++.+++++.+. .| |..+|..-...+.+.|.++ ++.+.+.++.+. -.-|...|+.-..++.+.|+ ++
T Consensus 128 ~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 128 REFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 999999999885 44 5667777777777778777 888888888873 23366677766666666666 88
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcC---CCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 480 EALDLIKSM-PLVP-DAFVWGALLGACKIHAKV-ELAEIVMENLVRFE---PEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 480 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
++++.++++ ...| |...|+.+...+.+.|+. +....+.+++.+++ |.++.++..++++|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 888888877 4445 788888888888777774 44556777777765 77778888999999999999999999999
Q ss_pred HHh
Q 047146 554 MKE 556 (608)
Q Consensus 554 m~~ 556 (608)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 134
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=1.9e-06 Score=68.62 Aligned_cols=94 Identities=16% Similarity=0.084 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 540 (608)
..+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34555666666666666666666665 2233 555666666667777777777777777777777777677777777777
Q ss_pred CCChHHHHHHHHHHHh
Q 047146 541 KNRWKEALKLRKKMKE 556 (608)
Q Consensus 541 ~g~~~~A~~~~~~m~~ 556 (608)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777777776654
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.52 E-value=3.2e-07 Score=74.01 Aligned_cols=96 Identities=13% Similarity=-0.002 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 541 (608)
.+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999999888 4455 7788888889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 047146 542 NRWKEALKLRKKMKERKV 559 (608)
Q Consensus 542 g~~~~A~~~~~~m~~~~~ 559 (608)
|++++|+..+++..+...
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999886543
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.51 E-value=7.4e-07 Score=70.35 Aligned_cols=100 Identities=17% Similarity=0.083 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCchHHHHHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE--GDGAYILMTN 536 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 536 (608)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456667778888888888888888876 3333 6778888888899999999999999999999999 8889999999
Q ss_pred HHHhC-CChHHHHHHHHHHHhCCCc
Q 047146 537 IYSSK-NRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 537 ~~~~~-g~~~~A~~~~~~m~~~~~~ 560 (608)
+|.+. |++++|.+.+++..+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999999876543
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=1.9e-05 Score=74.98 Aligned_cols=158 Identities=8% Similarity=-0.062 Sum_probs=119.0
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCCC---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKCR---DV------YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE-PD----EVTFVG 431 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 431 (608)
.+..+...|++++|..++++..+. +. ..+..+...+...+++++|+..+++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788899999999999876531 11 12334666677788999999999999874322 22 226888
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 047146 432 VLSACSHAGLVEEGCKHFLDMSRVY----NLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSM-------PLVPD-AFVWG 498 (608)
Q Consensus 432 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 498 (608)
+...|...|++++|...|+++.+.. +..+. ..++..+...|.+.|++++|++.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999987521 11222 347888999999999999999998876 22222 56888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhc
Q 047146 499 ALLGACKIHA-KVELAEIVMENLVRF 523 (608)
Q Consensus 499 ~l~~~~~~~~-~~~~a~~~~~~~~~~ 523 (608)
.+..++...| ++++|...++++.++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8889999999 579999999988764
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=5.9e-07 Score=75.44 Aligned_cols=98 Identities=11% Similarity=-0.026 Sum_probs=59.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGAC 504 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 504 (608)
.+..+...+.+.|++++|...|+.+.+ +.| +...|..+..+|.+.|++++|++.|++. .+.| ++..|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455555556666666666666666655 233 4555666666666666666666666655 3334 455666666667
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 505 KIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
...|++++|...+++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 777777777777777777766653
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=1.9e-06 Score=69.35 Aligned_cols=96 Identities=20% Similarity=0.278 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
...+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999988 3334 67888999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 047146 540 SKNRWKEALKLRKKMKER 557 (608)
Q Consensus 540 ~~g~~~~A~~~~~~m~~~ 557 (608)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998753
No 140
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.49 E-value=8.5e-06 Score=73.09 Aligned_cols=154 Identities=8% Similarity=-0.044 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC----ChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047146 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG----WLELGKWVHTYLDKNHINTDGFIGNALV 367 (608)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li 367 (608)
++..+...|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+....+.| ++..+..|.
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33334444444444444444444444432 22333333333333 3 4444444444444332 233344455
Q ss_pred HHhHh----cCCHHHHHHHHhhcCCCC-----hhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047146 368 DMYAK----CGRIDQAFGVFRSMKCRD-----VYSYTAMIVGLAI----HGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434 (608)
Q Consensus 368 ~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 434 (608)
.+|.. .+++++|.+.|++..+.+ ...+..|...|.. .+++++|+.+|++..+. ..+...+..+..
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGM 170 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 55544 566666666666655422 4566666666666 66677777777777664 223334455555
Q ss_pred HHhcc-c-----cHHHHHHHHHHhHh
Q 047146 435 ACSHA-G-----LVEEGCKHFLDMSR 454 (608)
Q Consensus 435 ~~~~~-g-----~~~~a~~~~~~~~~ 454 (608)
.|... | +.++|..+|+...+
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 55432 2 67777777776665
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.49 E-value=2.6e-07 Score=77.63 Aligned_cols=113 Identities=8% Similarity=-0.062 Sum_probs=84.3
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047146 414 FSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLV 491 (608)
Q Consensus 414 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 491 (608)
|+++.. +.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|++.|++. ...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 34533 35666677788888888888888887762 2235677778888888888888888888877 344
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 047146 492 P-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 492 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
| +...+..+..++...|++++|...+++++++.|+++..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 4 56778888888999999999999999999998887754
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=2e-06 Score=69.94 Aligned_cols=117 Identities=19% Similarity=0.081 Sum_probs=100.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788899999999999999999987 3344 7788889999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhh
Q 047146 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603 (608)
Q Consensus 539 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 603 (608)
.+.|++++|...+++..+. .|+++..+..+..+...+.+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--------------------------DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHHHHhc
Confidence 9999999999999998753 35566777777777666554
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=7.3e-07 Score=82.21 Aligned_cols=183 Identities=13% Similarity=0.005 Sum_probs=127.1
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCH---------------
Q 047146 372 KCGRIDQAFGVFRSMKC--R-DVYSYTAM-------IVGLAIHGKAWKALDIFSEMSQVGIEPDE--------------- 426 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~--------------- 426 (608)
..++...|.+.|.+... | ....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888887763 3 45677777 4555555556666655555444 23221
Q ss_pred -------HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 047146 427 -------VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA----F 495 (608)
Q Consensus 427 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 495 (608)
.....+...+...|++++|.++|..+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233455667788899999888887765 2354336666677888889999999998877333333 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFE--PE-GDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...|+++....+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56667788888999999999999887432 33 344778888889999999999999998876554
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.45 E-value=4.5e-06 Score=79.29 Aligned_cols=160 Identities=8% Similarity=-0.056 Sum_probs=113.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCC--C-Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKC--R-DV------YSYTAMIVGLAIHGKAWKALDIFSEMSQVGI---EPD--EVTF 429 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~ 429 (608)
...+..+...|++++|.+.+....+ + .. ..+..+...+...|++++|+..+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4456677888888888888865431 1 11 2233455667778899999999988875321 122 3478
Q ss_pred HHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC------CC-CHHH
Q 047146 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-----TEHYGCMVDLFGRAGLIREALDLIKSM-PL------VP-DAFV 496 (608)
Q Consensus 430 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~~~ 496 (608)
+.+...|...|++++|...++++.+.....|+ ..++..+...|.+.|++++|++.+++. .+ .. -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 88888899999999999999988742111222 257888899999999999999988876 11 11 1567
Q ss_pred HHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 047146 497 WGALLGACKIHAKVELA-EIVMENLVRF 523 (608)
Q Consensus 497 ~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 523 (608)
|..+...+...|++++| ...++++..+
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 88888899999999999 7778887654
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=2.8e-06 Score=70.97 Aligned_cols=94 Identities=12% Similarity=-0.026 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 536 (608)
...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++.+..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334444455555555555555555544 33443 3444445555555555555555555555555555555555555
Q ss_pred HHHhCCChHHHHHHHHHHH
Q 047146 537 IYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 537 ~~~~~g~~~~A~~~~~~m~ 555 (608)
+|...|++++|...+++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555554
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.44 E-value=1.6e-06 Score=71.48 Aligned_cols=98 Identities=9% Similarity=-0.055 Sum_probs=75.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
+...+..+...+...|++++|+..|++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566777777777777777777777766 3334 5667777778888888888888888888888888888888888888
Q ss_pred HhCCChHHHHHHHHHHHhCC
Q 047146 539 SSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 539 ~~~g~~~~A~~~~~~m~~~~ 558 (608)
...|++++|...+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 88888888888888876543
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=1.1e-06 Score=75.30 Aligned_cols=109 Identities=11% Similarity=0.001 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047146 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLG 502 (608)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 502 (608)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3457888888999999999999999999873 2336788899999999999999999999987 4455 5778889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 503 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
++...|++++|...+++++++.|++...+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999988665544
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.44 E-value=7.9e-07 Score=72.44 Aligned_cols=94 Identities=12% Similarity=-0.019 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-------hHHH
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG-------AYIL 533 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~ 533 (608)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..+++++++.|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566777778888888888888776 4445 5677888888888888888888888888888776643 5677
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 047146 534 MTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
++.+|...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888888899999988888764
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=5.3e-06 Score=73.65 Aligned_cols=92 Identities=11% Similarity=-0.006 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCC----
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-P---LVP-D----AFVWGALLGACKIHAKVELAEIVMENLVRFEP--EGD---- 528 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~---- 528 (608)
.+..+...|...|++++|.+.+++. . ..+ + ...+..+...+...|++++|...++++.+..+ .++
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444455555555555555554443 0 011 1 22344555566666666666666666664421 111
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..+..++.+|...|++++|...+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 134566777777777777777766664
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=1.9e-06 Score=76.61 Aligned_cols=152 Identities=12% Similarity=-0.008 Sum_probs=95.8
Q ss_pred hcCCHHHHHH---HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccccHH
Q 047146 372 KCGRIDQAFG---VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ----VGIEP-DEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 372 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~ 443 (608)
..|++++|.+ .+..-+......+..+...+...|++++|...+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777776 44443333455667777777777777777777777654 11222 2246666777777888888
Q ss_pred HHHHHHHHhHhhcCCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCH
Q 047146 444 EGCKHFLDMSRVYNLQP-----QTEHYGCMVDLFGRAGLIREALDLIKSM----PLVPD----AFVWGALLGACKIHAKV 510 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~ 510 (608)
+|...+.+..+...-.+ ....+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88887777765311112 1345667777888888888888777765 11122 22456667778888888
Q ss_pred HHHHHHHHHHHhc
Q 047146 511 ELAEIVMENLVRF 523 (608)
Q Consensus 511 ~~a~~~~~~~~~~ 523 (608)
++|...++++.++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887765
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=1.6e-06 Score=76.94 Aligned_cols=169 Identities=6% Similarity=-0.090 Sum_probs=102.9
Q ss_pred HhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHH
Q 047146 369 MYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445 (608)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 445 (608)
.....|+++++.+.++.-.. .....+..+...+...|++++|+..|++.... .|+...+... ....-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 34444666666666554332 13445666677777778888888888777763 3322111000 00000
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 446 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
. .. .....|..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...+++++++
T Consensus 83 ~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 00 01356677788888888888888888877 3344 6778888889999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCChHHHH-HHHHHHHhCC
Q 047146 524 EPEGDGAYILMTNIYSSKNRWKEAL-KLRKKMKERK 558 (608)
Q Consensus 524 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 558 (608)
.|+++.++..++.++...++.+++. ..+..|...+
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999988888777 5566665443
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=1.3e-06 Score=72.74 Aligned_cols=105 Identities=10% Similarity=-0.069 Sum_probs=76.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACK 505 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 505 (608)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|++. ...| ++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4555566677777888888777777662 2235667777777788888888888887776 3334 5567777888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
..|++++|...++++++..|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 89999999999999998888887554443
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.39 E-value=1.4e-06 Score=74.39 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 494 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...|..+..++.+.|++++|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 356777777888888888888888888888888888888888888888888888888888764
No 154
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=1.9e-06 Score=74.80 Aligned_cols=127 Identities=8% Similarity=0.035 Sum_probs=97.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHH-HHhcCCH--
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL-FGRAGLI-- 478 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 478 (608)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888877742 335568888888888999999999999988773 12356677788888 7788988
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 047146 479 REALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531 (608)
Q Consensus 479 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 531 (608)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998887 4445 577888888999999999999999999999999986543
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=4.6e-06 Score=76.90 Aligned_cols=136 Identities=10% Similarity=-0.034 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHH
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ--TEHYGCMVDLF 472 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 472 (608)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .. .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHH
Confidence 34556667777777777777776653 35444444455567777888888887775543 11 111 23566777888
Q ss_pred HhcCCHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 473 GRAGLIREALDLIKSM--P-LVPD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
.+.|++++|++.|++. + ..|. ...+.....++.+.|+.++|...|+++.+.+|+ +.++..|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8888888888888877 2 1143 235566667788888888898888888888888 65555553
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=2.6e-06 Score=69.13 Aligned_cols=109 Identities=8% Similarity=-0.100 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACK 505 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 505 (608)
.+......+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455555666666677776666666552 1224566666777777777777777777666 3344 5667777777888
Q ss_pred HcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 047146 506 IHAKVELAEIVMENLVRFE------PEGDGAYILMTNIY 538 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 538 (608)
..|++++|...++++.++. |.+...+..+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888887 66666665555544
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=5.4e-06 Score=65.91 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=70.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACK 505 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 505 (608)
.+..+...+...|++++|...++..... .+.+...+..+...+.+.|++++|...+++. ...| +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444555556666666666666666552 1224555666666666667777776666665 2233 5667777777788
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
..|++++|...++++.+..|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 888888888888888888888776666665543
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=4.1e-06 Score=71.64 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 469 (608)
...|..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|+..|+++.+. -+.+...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 445666666677777777777777776663 34 4456666666777777777777777776652 122456666677
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 047146 470 DLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~ 488 (608)
.+|.+.|++++|++.|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 7777777777777776665
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=7.2e-06 Score=68.42 Aligned_cols=112 Identities=10% Similarity=-0.072 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 047146 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGA 499 (608)
Q Consensus 426 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 499 (608)
...+..+...+...|++++|.+.|++..+ ..|+ ...+..+...|...|++++|++.+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34555555566666666666666666654 2343 456666677777777777777777665 3334 5667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 540 (608)
+..++...|++++|...++++++..|++...+..+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 88888889999999999999999999887777666665443
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.33 E-value=9.7e-06 Score=69.17 Aligned_cols=129 Identities=10% Similarity=-0.068 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 471 (608)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+.+..+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456667777788888888888888877742 224567777778888888888888888888762 23356778888888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 472 FGRAGLIREALDLIKSM-PLVP-DAFVWG--ALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
+...|++++|.+.+++. ...| +...+. .....+...|++++|...+++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888877 3333 444443 3334467778888888888776543
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=8.6e-07 Score=78.73 Aligned_cols=115 Identities=13% Similarity=-0.021 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-D----------------AFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
...+..+...+.+.|++++|++.|++. ...| + ...|..+..++...|++++|...++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666777777888888888887766 2222 2 267888889999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 047146 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602 (608)
Q Consensus 524 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 602 (608)
.|+++.++..++.+|...|++++|...+++..+. +|+++.++..+..+...+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------------------------NPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------------------------CCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753 4666777777776666554
No 162
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.29 E-value=3.6e-06 Score=81.64 Aligned_cols=115 Identities=10% Similarity=-0.036 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----------------AFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
...+..+...|.+.|++++|+..|++. ...|+ ...|..+..++.+.|++++|...++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445566666666666666666666665 22332 4788889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 047146 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602 (608)
Q Consensus 525 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 602 (608)
|+++.+|..++.+|...|++++|+..|++..+. .|++..++..|..+...++
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------------------~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------------------------YPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CSSCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999753 3666666666666655544
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.29 E-value=6.7e-06 Score=66.80 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------CchHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG-------DGAYI 532 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 532 (608)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677778888888888888888877 3333 67788888888999999999999999999988766 67899
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Q 047146 533 LMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.27 E-value=8.5e-05 Score=70.88 Aligned_cols=219 Identities=15% Similarity=0.101 Sum_probs=105.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChHH-HHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047146 300 LTHRGQFKEALDIFRRMQGLGLKPDDFT-LVCVLNSCANIG-WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377 (608)
Q Consensus 300 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 377 (608)
....+..++|++++++++.. .|+..| ++.--..+...+ .++++..+++.+.... +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-P-------------------- 120 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-L-------------------- 120 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-C--------------------
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-C--------------------
Confidence 33444556788888777764 344433 333223333333 2444444444444333 1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHH--------HHH
Q 047146 378 QAFGVFRSMKCRDVYSYTAMIVGLAIH-G-KAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVE--------EGC 446 (608)
Q Consensus 378 ~A~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~--------~a~ 446 (608)
++..+|+.-...+... + ++++++++++++.+. .| |...|+.-...+.+.|.++ ++.
T Consensus 121 -----------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 121 -----------KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp -----------CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred -----------CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 2334444444444433 3 445555555555442 22 3334443333333333333 555
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-------
Q 047146 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL-------IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKV------- 510 (608)
Q Consensus 447 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~------- 510 (608)
+.+.++.+. -.-|...|+....++.+.++ ++++++.++++ ...| |...|+-+-..+.+.|..
T Consensus 188 e~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~ 265 (349)
T 3q7a_A 188 DWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPA 265 (349)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccc
Confidence 555555441 12244445554444444443 45555555544 2233 455555544444444432
Q ss_pred -------------HHHHHHHHHHHhcC------CCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 511 -------------ELAEIVMENLVRFE------PEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 511 -------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.........+.... +.++.+...|+++|...|+.++|.++++.+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 266 ILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11222222222221 34555777889999999999999999998864
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=5.6e-06 Score=68.17 Aligned_cols=100 Identities=8% Similarity=-0.156 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047146 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLG 502 (608)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 502 (608)
+...+..+...+...|++++|...|...... .+.+...|..+..++...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4456666666777777777777777776652 1224566777777777777777777777766 3334 5667777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 503 ACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 503 ~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
++...|++++|...++++.+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888888776
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.25 E-value=6.9e-06 Score=83.35 Aligned_cols=144 Identities=10% Similarity=-0.027 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ ... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 345666677777777777777777777652 2221100 0 000000 000 01357778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHH
Q 047146 471 LFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 548 (608)
+|.+.|++++|+..++++ .+.| +...|..+..++...|++++|...+++++++.|++..++..++.++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998887 4444 67788889999999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHHh
Q 047146 549 K-LRKKMKE 556 (608)
Q Consensus 549 ~-~~~~m~~ 556 (608)
+ .+++|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4565543
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=2.5e-06 Score=87.00 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=94.8
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAK 509 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 509 (608)
...+.+.|++++|.+.++++.+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34456778888888888888772 34 4778888888888999999998888887 4455 67788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhCCChHHHHHHHHH
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNI--YSSKNRWKEALKLRKK 553 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 553 (608)
+++|.+.++++++..|++...+..++.+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999988888 8889999999999884
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.24 E-value=4.9e-06 Score=69.17 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRF-------EPEGDGAY----ILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777777888888888888888888888 88888888 8888888888888888888888864
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=4.5e-06 Score=67.93 Aligned_cols=89 Identities=18% Similarity=0.115 Sum_probs=47.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHH
Q 047146 468 MVDLFGRAGLIREALDLIKSM-PLVPD-A---FVWGALLGACKIHAKVELAEIVMENLVRFEPEG---DGAYILMTNIYS 539 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 539 (608)
+...+.+.|++++|.+.|+.. ...|+ . ..+..+..++...|++++|...++++.+..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344444555555555555544 11221 1 244445555556666666666666666666655 444556666666
Q ss_pred hCCChHHHHHHHHHHHh
Q 047146 540 SKNRWKEALKLRKKMKE 556 (608)
Q Consensus 540 ~~g~~~~A~~~~~~m~~ 556 (608)
+.|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665553
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=2.5e-05 Score=78.72 Aligned_cols=164 Identities=8% Similarity=-0.110 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhccccHHHHHHHHHHhHhh---cCCCC-Chh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDE----VTFVGVLSACSHAGLVEEGCKHFLDMSRV---YNLQP-QTE 463 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~ 463 (608)
++..+...|...|++++|.+.+.++...- ..++. .+.+.+...+...|+.+++..++...... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667778888888888888887765421 11122 12233333455668888888888776542 12222 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----C
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-------PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE---PEG----D 528 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~ 528 (608)
++..++..|...|++++|..++++. ..+| ...++..++..|...|++++|..+++++.... +++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6778889999999999998888775 1223 24477778888999999999999999888663 222 1
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3567778888899999999888877753
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.00098 Score=63.58 Aligned_cols=237 Identities=10% Similarity=0.041 Sum_probs=149.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 047146 262 HNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRG-QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337 (608)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 337 (608)
++.+-....+.+..++|+++++.+. +.+..+|+.--..+...| .+++++++++.+.... +-+...|+.-...+..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333334444555678999999887 345667888888888888 5999999999999863 2333444333222222
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH-----
Q 047146 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG-RIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAW----- 408 (608)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~----- 408 (608)
. .+ ++++++++++.+.+ +|..+|+...-.+.+.|.++
T Consensus 136 l----------------------------------~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 136 I----------------------------------SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp H----------------------------------CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred h----------------------------------cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchh
Confidence 1 02 44566666666653 34556665555555544444
Q ss_pred ---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-------HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCH
Q 047146 409 ---KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL-------VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478 (608)
Q Consensus 409 ---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (608)
++++.++++.+.. .-|...|+.....+.+.+. ++++.+.+.++... -+-|...|+.+-..+.+.|+.
T Consensus 182 ~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCC
Confidence 7888888888752 2255677777666666664 67777777777662 233667777777777666653
Q ss_pred --------------------HHHHHHHHhC-CC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCCc
Q 047146 479 --------------------REALDLIKSM-PL-------VPDAFVWGALLGACKIHAKVELAEIVMENLV-RFEPEGDG 529 (608)
Q Consensus 479 --------------------~~A~~~~~~~-~~-------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~ 529 (608)
.+..++..++ +. .+.+..+..++..|...|+.++|.++++.+. +.+|-...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~ 338 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG 338 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence 3344444444 21 2577788888889999999999999999886 55776655
Q ss_pred hHHHHHH
Q 047146 530 AYILMTN 536 (608)
Q Consensus 530 ~~~~l~~ 536 (608)
.|...+.
T Consensus 339 yw~~~~~ 345 (349)
T 3q7a_A 339 YWEFRRR 345 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.14 E-value=2.1e-06 Score=68.69 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|+..+++..
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555555555555555555544
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.13 E-value=3.9e-06 Score=81.43 Aligned_cols=150 Identities=9% Similarity=-0.045 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
...|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 45677777788889999999999999887 3555432 334455555443221 136788899
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hCCChHHH
Q 047146 471 LFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS-SKNRWKEA 547 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 547 (608)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...+++++++.|+++.++..+..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4445 67788899999999999999999999999999999988888888844 55677888
Q ss_pred HHHHHHHHhCCCc
Q 047146 548 LKLRKKMKERKVK 560 (608)
Q Consensus 548 ~~~~~~m~~~~~~ 560 (608)
.+++++|......
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 8899888765543
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=1.2e-05 Score=63.10 Aligned_cols=99 Identities=15% Similarity=0.031 Sum_probs=61.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP---DAFVWGALLGA 503 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 503 (608)
.+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4445555566666666666666666552 1224455666666666666666666666665 2233 35666677777
Q ss_pred HHHc-CCHHHHHHHHHHHHhcCCCCC
Q 047146 504 CKIH-AKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 504 ~~~~-~~~~~a~~~~~~~~~~~p~~~ 528 (608)
+... |++++|.+.++++.+..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 777777777777777777654
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=7.9e-06 Score=66.33 Aligned_cols=105 Identities=8% Similarity=-0.035 Sum_probs=51.8
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HHHHHHHH
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PL----VPD----AFVWGALL 501 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~l~ 501 (608)
.+...+...|++++|...+..+.+. .+.+...+..+...|...|++++|...+++. .. .++ ..++..+.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 3333444444444444444444331 1123334444444444444444444444443 11 112 44556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
..+...|++++|...++++.+..| ++.....+..++
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 667777777777777777777666 344444444443
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.12 E-value=0.0008 Score=63.86 Aligned_cols=190 Identities=7% Similarity=-0.061 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC--CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC-hHHHHHHHH
Q 047146 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG--RIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGK-AWKALDIFS 415 (608)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~-~~~A~~~~~ 415 (608)
+.+..++..+.... +-+..+|+.-..++.+.| .++++..+++.+. ..|..+|+.-.-.+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444444433 223344444444444445 3666666666665 2455666666666666666 467777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhcc--------------ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc-----
Q 047146 416 EMSQVGIEP-DEVTFVGVLSACSHA--------------GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA----- 475 (608)
Q Consensus 416 ~m~~~g~~p-~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 475 (608)
++.+. .| |...|+.....+... +.++++.+.+...... -+-|...|+-+-..+.+.
T Consensus 170 ~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 170 SLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 77764 33 444555444443333 4466666666666552 222455565444444443
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047146 476 ------GLIREALDLIKSM-PLVPDAFVWGALLG-----ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537 (608)
Q Consensus 476 ------g~~~~A~~~~~~~-~~~p~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 537 (608)
+.++++++.++++ ...||. .|..+.. +....+..++....++++.+++|....-|..+...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3455666666655 344543 2221111 11134556666666667766666666555555443
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.12 E-value=1e-05 Score=65.00 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=58.1
Q ss_pred HHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 047146 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIH 507 (608)
Q Consensus 430 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 507 (608)
..+...+.+.|++++|...|+.+.+. -+.+...|..+..++.+.|++++|+..+++. .+.| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33445556666666666666666552 1224556666666666677777777666665 3344 455666677777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCC
Q 047146 508 AKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~ 528 (608)
|++++|...++++++..|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 777777777777777777653
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=2.1e-05 Score=66.47 Aligned_cols=93 Identities=17% Similarity=0.113 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CCc
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM----PLVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPE------GDG 529 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~ 529 (608)
.+..+...+...|++++|.+.+++. +..++ ...+..+...+...|++++|...++++.+..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555555555555555543 00111 335555666677777777777777777655221 124
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 530 AYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888888888888888888887754
No 179
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.10 E-value=1.6e-05 Score=74.92 Aligned_cols=111 Identities=8% Similarity=-0.153 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 047146 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALL 501 (608)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 501 (608)
+...+..+...+...|++++|...|+.+.+. .| +...|..+..+|.+.|++++|++.+++. ...| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567778888899999999999999999873 44 6788889999999999999999999887 5566 677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
.++...|++++|...++++.++.|+++..+...+...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 9999999999999999999999887765544444333
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.09 E-value=4.1e-05 Score=62.07 Aligned_cols=101 Identities=14% Similarity=0.067 Sum_probs=63.7
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 047146 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQT---EHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGA 503 (608)
Q Consensus 432 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 503 (608)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...+++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3444556666666666666665521 1122 35556666667777777777766665 22332 4556667777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
+...|++++|...++++.+..|+++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 8888888888888888888888776444333
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=1.8e-05 Score=77.54 Aligned_cols=137 Identities=10% Similarity=-0.042 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVD 470 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 470 (608)
..|..+...+.+.|++++|+..|++..+. .|+.. ..... .... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 45666677777778888887777776652 11100 00001 1111 1223 4567888999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHH
Q 047146 471 LFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 548 (608)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...+++++++.|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 6666 67788889999999999999999999999999999999999999999988888776
Q ss_pred HH
Q 047146 549 KL 550 (608)
Q Consensus 549 ~~ 550 (608)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 182
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.07 E-value=3.7e-05 Score=62.31 Aligned_cols=60 Identities=7% Similarity=-0.054 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.+..+...+.+.|++++|+..|++..+. .|+ ...|..+..++...|++++|++.+++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555566666666666666666552 343 34555555566666666666666655544
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.06 E-value=0.00067 Score=64.38 Aligned_cols=179 Identities=11% Similarity=0.050 Sum_probs=132.4
Q ss_pred HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcccc-HHHHHHH
Q 047146 376 IDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGK--AWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGL-VEEGCKH 448 (608)
Q Consensus 376 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~-~~~a~~~ 448 (608)
++++..+++.+. .++..+|+.-...+...++ +++++.+++++.+. .| |...|+.-...+...|. ++++.+.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567777777765 3577889988888888884 89999999999985 44 66688777777777887 6899999
Q ss_pred HHHhHhhcCCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----
Q 047146 449 FLDMSRVYNLQPQTEHYGCMVDLFGRA--------------GLIREALDLIKSM-PLVP-DAFVWGALLGACKIH----- 507 (608)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----- 507 (608)
+..+.+. -+-|...|+....++.+. +.++++++.++.. ...| |...|+-+-..+.+.
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 9999873 234677787776666655 4578888888887 4455 777887665555544
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCchHHHHHHH---HHhCCChHHHHHHHHHHHhCC
Q 047146 508 ------AKVELAEIVMENLVRFEPEGDGAYILMTNI---YSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 508 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+.++++++.++++.+..|++.-++..++.. ....|..++....+.++.+-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 458899999999999999985443333322 224677888999999987533
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.06 E-value=1.9e-05 Score=80.02 Aligned_cols=64 Identities=9% Similarity=-0.063 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 494 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
...|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|+..|++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5678888899999999999999999999999999999999999999999999999999999854
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.05 E-value=2.1e-05 Score=77.17 Aligned_cols=131 Identities=14% Similarity=0.034 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP-DAFVWGALLGACK 505 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 505 (608)
..+..+...+.+.|++++|.+.|+++.+.. +.. ......+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 356666666777777777777777766510 000 0000111111 1233 4568888889999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCC
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 585 (608)
+.|++++|+..+++++++.|+++.+|..++.+|...|++++|++.+++..+. .|
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------------------------~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------------------------AP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------------------CC
Confidence 9999999999999999999999999999999999999999999999998753 36
Q ss_pred ChhHHHHHHHHHHHHHh
Q 047146 586 KTLEIYKLLDEIMHQSK 602 (608)
Q Consensus 586 ~~~~~~~~l~~~~~~~~ 602 (608)
++..++..|..+...++
T Consensus 339 ~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 339 EDKAIQAELLKVKQKIK 355 (370)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 67777777777766554
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=1.2e-05 Score=68.65 Aligned_cols=77 Identities=17% Similarity=0.032 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD-GAYILMTNIY 538 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 538 (608)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...+++++++.|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 457788888888999999999888887 4445 677888888999999999999999999999999987 4444444443
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=5e-06 Score=66.47 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=63.6
Q ss_pred cccHHHHHHHHHHhHhhcCC-CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 047146 439 AGLVEEGCKHFLDMSRVYNL-QP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 514 (608)
.|++++|+..|+++.+ .+. .| +...+..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4666777777777765 110 23 3566777777788888888888887776 3344 5667777888888888888888
Q ss_pred HHHHHHHhcCCCCCchH
Q 047146 515 IVMENLVRFEPEGDGAY 531 (608)
Q Consensus 515 ~~~~~~~~~~p~~~~~~ 531 (608)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888876543
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=1.4e-05 Score=66.44 Aligned_cols=71 Identities=14% Similarity=0.019 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-PL-------VPD-AFVW----GALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6666666677777777666666555 33 785 4577 888899999999999999999999999998865
Q ss_pred HHHH
Q 047146 531 YILM 534 (608)
Q Consensus 531 ~~~l 534 (608)
+..+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4444
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.97 E-value=4.1e-05 Score=64.62 Aligned_cols=132 Identities=10% Similarity=0.008 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIE-PD----EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TE 463 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 463 (608)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555555666665555554432100 11 124555556666666666666666665542111111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-------PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566667777777777777766655 1111 13456666777888888888888888877653
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.96 E-value=0.00036 Score=72.34 Aligned_cols=169 Identities=8% Similarity=-0.058 Sum_probs=136.1
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 047146 374 GRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGK----------AWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHA 439 (608)
Q Consensus 374 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 439 (608)
...++|.+.++.+.. .+...|+.--.++...|+ ++++++.++++.+. .| +..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 345677888887763 355678877777777776 89999999999985 55 556888888888888
Q ss_pred c--cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-------
Q 047146 440 G--LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG-LIREALDLIKSM-PLVP-DAFVWGALLGACKIH------- 507 (608)
Q Consensus 440 g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------- 507 (608)
+ +++++.+.++++.+. -+-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 8 779999999999883 2336778888888888888 899999999988 5566 788888887776663
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHH
Q 047146 508 -------AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546 (608)
Q Consensus 508 -------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 546 (608)
+.++++.+.++++++.+|++.++|..+..++.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988555
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=2.5e-06 Score=67.25 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG------DGAYI 532 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 532 (608)
+...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456777788888888888888888877 3344 67788888888999999999999999999999988 66777
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q 047146 533 LMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~ 553 (608)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 788888887777766655543
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.94 E-value=2.1e-05 Score=76.16 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=78.9
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
...+..+...+.+.|++++|...|++... |+... +...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34567788889999999999999998653 32221 222333333332221 136777788888
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHHcCCHHHHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGA-CKIHAKVELAE 514 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~~~~~~a~ 514 (608)
+.|++++|+..++++.+. -+.+...|..+..+|...|++++|+..|++. .+.|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988888772 2235778888889999999999999999888 56664 3344444444 33456677888
Q ss_pred HHHHHHHhcCCCCC
Q 047146 515 IVMENLVRFEPEGD 528 (608)
Q Consensus 515 ~~~~~~~~~~p~~~ 528 (608)
..+.++.+..|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 88998888888765
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00016 Score=72.68 Aligned_cols=158 Identities=6% Similarity=-0.041 Sum_probs=117.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh
Q 047146 399 VGLAIHGKAWKALDIFSEMSQVGIEPDE----------------VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462 (608)
Q Consensus 399 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 462 (608)
..+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4456778888888888888764322111 247778899999999999999999987743333332
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Q 047146 463 ----EHYGCMVDLFGRAGLIREALDLIKSM-------PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFE------ 524 (608)
Q Consensus 463 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 524 (608)
.+.+.+...+...|+.++|.++++.. +..+. ..++..+...+...|++++|..+++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23444555666778999999888765 23333 4577888899999999999999999987652
Q ss_pred CCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 525 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+.....+..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 12235788999999999999999999998864
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.93 E-value=5.7e-05 Score=76.45 Aligned_cols=123 Identities=10% Similarity=-0.009 Sum_probs=89.0
Q ss_pred HhccccHHHHHHHHHHhHhhcC--CCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYN--LQP---Q-TEHYGCMVDLFGRAGLIREALDLIKSM---------PLVPD-AFVWGA 499 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~--~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 499 (608)
+..+|++++|+.++++..+... +.| + ..+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456777777766666654211 112 1 356677777777778877777776664 33454 347888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCc---hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 500 LLGACKIHAKVELAEIVMENLVRF-----EPEGDG---AYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
|...|...|++++|+.+++++++. +|+.+. ....+...+...+++++|+.++++++++-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999988863 677664 45678888889999999999999998754
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.86 E-value=7.8e-05 Score=57.37 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+...|..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|++.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778888889999999999999999999999999999999999999999999999999998865
No 196
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.85 E-value=9.8e-05 Score=75.17 Aligned_cols=113 Identities=9% Similarity=0.028 Sum_probs=52.3
Q ss_pred HhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHH
Q 047146 369 MYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEE 444 (608)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 444 (608)
.|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|+..+++..+. .| +...+..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445555555555555443 123445555555555555555555555555552 33 23345555555555555555
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHHHH--HHhcCCHHHHHHHHH
Q 047146 445 GCKHFLDMSRVYNLQP-QTEHYGCMVDL--FGRAGLIREALDLIK 486 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 486 (608)
|.+.++++.+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555442 12 22233333333 444455555555544
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.82 E-value=9.3e-05 Score=58.61 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=51.3
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 481 ALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 481 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
|++.+++. ...| +...|..+...+...|++++|...++++++..|++...|..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444 3334 5566666667777777777777777777777777777777777777777777777777777654
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=0.00012 Score=54.88 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
...+..+...+.+.|++++|+..+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777777888888888887776 3334 56677788888888899999999999999888888888888888876
Q ss_pred hCC
Q 047146 540 SKN 542 (608)
Q Consensus 540 ~~g 542 (608)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00024 Score=55.52 Aligned_cols=67 Identities=7% Similarity=-0.028 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
++...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|++.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3556788888999999999999999999999999999999999999999999999999999998643
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.73 E-value=1.6e-05 Score=65.83 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC-----------ChHHHHHHHHHHHhCCC
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKN-----------RWKEALKLRKKMKERKV 559 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~ 559 (608)
+++|+..++++++++|++..+|..++.+|...| ++++|++.|++..+.++
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 679999999999999999999999999998875 89999999999886543
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.65 E-value=0.00032 Score=52.37 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+...+..+...+...|++++|...++++.+..|+++..+..++.+|.+.|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35577788888999999999999999999999999999999999999999999999999998753
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00015 Score=73.48 Aligned_cols=115 Identities=12% Similarity=-0.043 Sum_probs=89.3
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCC---chHH
Q 047146 471 LFGRAGLIREALDLIKSM---------PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRF-----EPEGD---GAYI 532 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~~ 532 (608)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++. +|+.+ ..++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999888765 23343 458889999999999999999999998864 56655 4688
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhh
Q 047146 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603 (608)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 603 (608)
.|+.+|...|++++|+.++++..+.-.+ .- ...||...+...+|.....++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~l-----------------G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-TH-----------------GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-HT-----------------CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-Hh-----------------CCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998752211 11 15789988888888887766553
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.62 E-value=0.00032 Score=52.81 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 492 PDAFVWGALLGACKIHAK---VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 477778888877765555 799999999999999999999999999999999999999999999987654
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.58 E-value=0.00086 Score=69.56 Aligned_cols=151 Identities=12% Similarity=0.021 Sum_probs=124.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcccc----------HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 047146 405 GKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGL----------VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 473 (608)
...++|++.++++.+ +.|+. ..|+.--.++...|+ ++++.+.++.+.+. -+-+..+|+.-.-++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345688999999998 46755 466666666666676 89999999999873 3346778888888888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC-------
Q 047146 474 RAG--LIREALDLIKSM-PLVP-DAFVWGALLGACKIHA-KVELAEIVMENLVRFEPEGDGAYILMTNIYSSK------- 541 (608)
Q Consensus 474 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 541 (608)
+.| +++++++.++++ ...| +...|+.-..+..+.| .++++.+.++++++.+|.+.++|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 899 779999999998 4444 8889999888888889 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHhCCC
Q 047146 542 -------NRWKEALKLRKKMKERKV 559 (608)
Q Consensus 542 -------g~~~~A~~~~~~m~~~~~ 559 (608)
+.++++++.+++..+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999988876544
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.51 E-value=0.0011 Score=54.29 Aligned_cols=90 Identities=7% Similarity=-0.077 Sum_probs=49.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 047146 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI----HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS--- 540 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 540 (608)
|...|...+.+++|.+.|++.-...++..+..+...|.. .+++++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444444455555444112344444455555544 55666666666666554 344566666666666
Q ss_pred -CCChHHHHHHHHHHHhCCC
Q 047146 541 -KNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 541 -~g~~~~A~~~~~~m~~~~~ 559 (608)
.+++++|.+.+++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6667777777776666553
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.41 E-value=0.00018 Score=59.55 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=33.7
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCC
Q 047146 479 REALDLIKSM-PLVP-DAFVWGALLGACKIH-----------AKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 479 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~ 528 (608)
++|+..|++. .+.| +...|..+..+|... |++++|.+.|+++++++|++.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 3555555544 3344 344555555555544 589999999999999999985
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.39 E-value=0.00048 Score=68.61 Aligned_cols=115 Identities=11% Similarity=0.034 Sum_probs=83.3
Q ss_pred HHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCC---chH
Q 047146 470 DLFGRAGLIREALDLIKSM---------PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRF-----EPEGD---GAY 531 (608)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~ 531 (608)
.-+.+.|++++|++++++. +..|+ ..+++.+..+|...|++++|+.+++++++. +|+.+ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345667777777777654 11222 347788888899999999999999988754 45554 368
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 047146 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602 (608)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 602 (608)
+.|+.+|...|++++|+.++++..+--.+ . ....||...+++..|.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRV-T-----------------HGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH-h-----------------cCCCChHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999998752111 1 11568888888888888777665
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.36 E-value=0.00076 Score=51.37 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=45.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 047146 468 MVDLFGRAGLIREALDLIKSM-PLVP-DAF-VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 531 (608)
....+.+.|++++|++.+++. ...| +.. .|..+..++...|++++|...++++++.+|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455666777788887777776 3344 455 677777777777888888888888877777776555
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.35 E-value=0.00068 Score=53.45 Aligned_cols=79 Identities=10% Similarity=-0.006 Sum_probs=48.4
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047146 445 GCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLV 521 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 521 (608)
+...|+...+ ..| +...+..+...|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++.
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444554443 223 4555666666666666666666666665 2333 45566667777777777777777777777
Q ss_pred hcCCC
Q 047146 522 RFEPE 526 (608)
Q Consensus 522 ~~~p~ 526 (608)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 76654
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.35 E-value=0.0011 Score=54.21 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 493 DAFVWGALLGACKIHA---KVELAEIVMENLVRFE-P-EGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+..+.-.+..++.+.+ +.++++.+++.+.+.+ | .....+..|+-+|.+.|++++|+++++.+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444444444444 3334444444444444 3 223344444444555555555555555444
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.28 E-value=0.0041 Score=50.85 Aligned_cols=113 Identities=11% Similarity=-0.029 Sum_probs=90.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 047146 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AGLIRE 480 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 480 (608)
+++++|+++|++..+.| .|+.. +...|...+.+++|.+.|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 44444 666777778888899999998872 466778888888888 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Q 047146 481 ALDLIKSMPLVPDAFVWGALLGACKI----HAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 481 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 526 (608)
|.++|++.-..-++..+..|...|.. .++.++|...++++.+.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999988323577788888888888 89999999999999887543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.19 E-value=0.0095 Score=56.77 Aligned_cols=138 Identities=12% Similarity=0.010 Sum_probs=71.2
Q ss_pred CChhHHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------ccHHHHHHHHHHhHh
Q 047146 389 RDVYSYTAMIVGLA--IHGK---AWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHA--------GLVEEGCKHFLDMSR 454 (608)
Q Consensus 389 ~~~~~~~~li~~~~--~~~~---~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~ 454 (608)
.+...|...+.+.. ..++ ..+|..+|++..+ ..|+. ..+..+..++... .........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46677777776543 3333 4679999999988 57764 3454444433210 011111111111111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 455 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
....+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.++++..++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 0111234455555555555556666666666655 3335555555555555666666666666666666666553
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.16 E-value=0.045 Score=42.91 Aligned_cols=141 Identities=9% Similarity=0.040 Sum_probs=105.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 047146 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480 (608)
Q Consensus 401 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (608)
+.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 44567788888888877762 34556666666666666666666666666542222 24566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 481 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
...-+-.++ .+.......+......|+-++-..++..+....+.+++....++.+|.+.|+..+|.+++++.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666663 356667778888999999999999999987788888899999999999999999999999999999986
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.16 E-value=0.00033 Score=53.51 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=45.7
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCC
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTE-HYGCMVDLFGRAGLIREALDLIKSM-PLVPDA-FVWGALLGACKIHAK 509 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~ 509 (608)
...+...|++++|...++.+.+. .+.+.. .+..+..+|...|++++|++.|++. ...|+. ..+.. +.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 34455666667776666666552 122344 5666666666667777776666665 333322 22210 34
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 047146 510 VELAEIVMENLVRFEPEG 527 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~ 527 (608)
+.++...+++.....|++
T Consensus 77 ~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHhccCccc
Confidence 445555555555555444
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.13 E-value=0.0012 Score=65.67 Aligned_cols=82 Identities=12% Similarity=0.012 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCC---chHHHHHH
Q 047146 475 AGLIREALDLIKSM---------PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRF-----EPEGD---GAYILMTN 536 (608)
Q Consensus 475 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~ 536 (608)
.|++++|+.++++. +..|+ ..+++.+..+|...|++++|+.+++++++. +|+.+ ..|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666665543 22333 347888888899999999999999988754 55555 36889999
Q ss_pred HHHhCCChHHHHHHHHHHHh
Q 047146 537 IYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 537 ~~~~~g~~~~A~~~~~~m~~ 556 (608)
+|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999875
No 216
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.03 E-value=0.4 Score=49.65 Aligned_cols=56 Identities=9% Similarity=-0.040 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047146 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318 (608)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 318 (608)
-+..+..+.+.+++.....++.. ...+...-.....+....|+..+|.....++=.
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~ 130 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL 130 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Confidence 34445555666666666666655 333443334455555666666555555555433
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.94 E-value=0.0036 Score=47.74 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 390 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
+...|..+...|...|++++|+..|++..+. .| +...|..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455666666666667777777777666663 33 334566666666667777777666666654
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.81 E-value=0.0067 Score=60.23 Aligned_cols=91 Identities=7% Similarity=-0.133 Sum_probs=60.8
Q ss_pred cccHHHHHHHHHHhHhhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 047146 439 AGLVEEGCKHFLDMSRVY--NLQPQ----TEHYGCMVDLFGRAGLIREALDLIKSM---------PLVPDA-FVWGALLG 502 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~ 502 (608)
.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666654421 12222 355677777777777777777776665 234543 47888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhc-----CCCCCc
Q 047146 503 ACKIHAKVELAEIVMENLVRF-----EPEGDG 529 (608)
Q Consensus 503 ~~~~~~~~~~a~~~~~~~~~~-----~p~~~~ 529 (608)
.|...|++++|+.++++++++ +|+.+.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 899999999999999888764 677663
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.72 E-value=0.012 Score=58.57 Aligned_cols=96 Identities=13% Similarity=-0.081 Sum_probs=60.6
Q ss_pred HHhccccHHHHHHHHHHhHhhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVY--NLQPQ----TEHYGCMVDLFGRAGLIREALDLIKSM---------PLVPD-AFVWG 498 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 498 (608)
.+...|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++. +..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566666666666555411 11221 345666666777777777776666654 23443 34777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCch
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRF-----EPEGDGA 530 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~ 530 (608)
.|...|...|++++|+.+++++++. +|+.+.+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 8888888899999999888888764 6777643
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.12 Score=56.23 Aligned_cols=155 Identities=16% Similarity=0.111 Sum_probs=95.7
Q ss_pred HHHHhCCCchHHHH-HHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcC
Q 047146 195 QAYVKMDYPTEAIL-SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273 (608)
Q Consensus 195 ~~~~~~g~~~~a~~-~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 273 (608)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+ +.. .-.......|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~-----------~~~---~~f~~~l~~~ 666 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISP-----------DQD---QKFELALKVG 666 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCC-----------CHH---HHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCC-----------Ccc---hheehhhhcC
Confidence 34445677777766 4421 1 112223566666777777777766542 111 1134456789
Q ss_pred ChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047146 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353 (608)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (608)
+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+...++-+....
T Consensus 667 ~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 667 QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998887764 557899999999999999999999987753 33444455556666666555555544
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhc
Q 047146 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386 (608)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 386 (608)
.|. ++....+|.+.|++++|.+++.++
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 431 133444566677777777664443
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.63 E-value=0.0074 Score=55.04 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=68.1
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhC-CChHH
Q 047146 478 IREALDLIKSM-PLVPD---AFVWGALLGACKI-----HAKVELAEIVMENLVRFEPEG-DGAYILMTNIYSSK-NRWKE 546 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 546 (608)
...|...+++. .+.|+ ...|..+...|.. -|+.++|++.|+++++++|+. ..++..+++.|++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 45565 5577777777877 499999999999999999975 88999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 047146 547 ALKLRKKMKERKVKKTPG 564 (608)
Q Consensus 547 A~~~~~~m~~~~~~~~~~ 564 (608)
|.+.+++.....++..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877765443
No 222
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.60 E-value=5.3e-05 Score=73.39 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=165.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
.+.+|+.|..++.+.+++.+|.+.|-+ ..|+..|..+|.+..+.|.+++-+..+.-.++..-.|... +.++-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHH
Confidence 456888888888888888888877744 3466778889999999999998888877666654444333 47788
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC------------------------
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP------------------------ 286 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------ 286 (608)
+|++.+++.+-++++ ..||+.-...+.+-|...|.++.|.-+|..+.
T Consensus 125 ayAk~~rL~elEefl---------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHTSCSSSTTTSTT---------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHhhCcHHHHHHHH---------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877644432 22466556777788888888888888887764
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 047146 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366 (608)
Q Consensus 287 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (608)
..++.+|-.+-.+|...+++.-|--.--.+.- .|| ....++..|...|.+++-+.+++.-... -.....+|+-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 23677899998999999888766544333321 222 1233455577788888877777766532 24567788888
Q ss_pred HHHhHhcCCHHHHHHHHhhcCC----C-------ChhHHHHHHHHHHHcCChHHHHH
Q 047146 367 VDMYAKCGRIDQAFGVFRSMKC----R-------DVYSYTAMIVGLAIHGKAWKALD 412 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~~~~~~A~~ 412 (608)
.-.|++- ++++-.+.++..-. | ....|..++-.|.+-..++.|..
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 8888875 56666665554322 2 45678888888888888887653
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.56 E-value=0.033 Score=53.10 Aligned_cols=134 Identities=11% Similarity=0.080 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHHHhc-----cccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHh---cC--------CHHHHHHH
Q 047146 422 IEPDEVTFVGVLSACSH-----AGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGR---AG--------LIREALDL 484 (608)
Q Consensus 422 ~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g--------~~~~A~~~ 484 (608)
.+.+...|..++++... ..+..+|..+|+++.+ ..|+ ...|..+.-+|.- .+ ....+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35566778877776432 2346889999999987 4675 3455444443321 11 11122332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 485 IKSMP-LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 485 ~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
...+. ...++.++.++...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++....++
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 23332 2447888888887788889999999999999999965 45788999999999999999999999876544
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.51 E-value=0.0038 Score=60.76 Aligned_cols=240 Identities=10% Similarity=0.028 Sum_probs=159.4
Q ss_pred CchhHHH-HHHHHHccCCchHHHh-hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhcc
Q 047146 54 QHQTQIL-YDKIISLSRGNEIENL-SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQS 130 (608)
Q Consensus 54 ~~~~~~~-l~~~~~~~g~~~~A~~-~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 130 (608)
..+.+|+ |..++.+.|+..+|.. -+.-.|+..|..+|....+.|.+++ +..+...++..- +...=+.++-+|++.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 3566777 9999999999999988 5556777889999999999999999 666655554422 334446788889988
Q ss_pred CCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC--------------------CCCCCcchH
Q 047146 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP--------------------QAQRDLVSW 190 (608)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------~~~~~~~~~ 190 (608)
+++.+-++++. .|+..-...+-+-|...|.++.|.-+|..+..- --..++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 87765433321 244444455555556666666666555543211 012467889
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHH
Q 047146 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270 (608)
Q Consensus 191 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 270 (608)
--+-.+|+..+.+.-|.-.--.+.- .|| -...++..|-..|.+++-+.+++..+.. + +....+|+-|.-.|+
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl--E-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL--E-RAHMGMFTELAILYS 274 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS--T-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC--C-chhHHHHHHHHHHHH
Confidence 9999999999988877555444432 122 2334566788889999988888887743 2 226778898888888
Q ss_pred hcCChHHHHHHHccCC----CC-------ChhhHHHHHHHHHhcCChhHHHH
Q 047146 271 KCGNIPSARKVFDEMP----VK-------NVVSWNSMIAGLTHRGQFKEALD 311 (608)
Q Consensus 271 ~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 311 (608)
|- +.++..+.++..- -| ....|.-++-.|.+-.+++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 76 4455544443322 22 44568888888888888887654
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.36 E-value=0.016 Score=45.46 Aligned_cols=64 Identities=9% Similarity=-0.050 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 492 PDAFVWGALLGACKIHAKVEL---AEIVMENLVRFE-P-EGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
|+..+--.+.+++.+.++... ++.+++.+.+.. | ........|+-++.+.|++++|++.++.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334433344444444443333 445555444443 2 122344455555555555555555555554
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.34 E-value=0.042 Score=60.00 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
...|..+.+.+.+.|+++.|++.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555555555555555555554
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.32 E-value=0.025 Score=42.20 Aligned_cols=75 Identities=9% Similarity=-0.030 Sum_probs=53.6
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 460 PQTEHYGCMVDLFGRAGL---IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 460 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
.+...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|...|+++.+..|+++ .+..+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~-~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL-DRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC-CHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-cHHHH
Confidence 456677777777765444 68888888877 4455 566777777888888999999999999888888833 33333
Q ss_pred H
Q 047146 535 T 535 (608)
Q Consensus 535 ~ 535 (608)
.
T Consensus 83 ~ 83 (93)
T 3bee_A 83 I 83 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.03 E-value=0.027 Score=46.03 Aligned_cols=86 Identities=15% Similarity=-0.018 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG---LIREALDLIKSM-PLV-P--DAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a 513 (608)
.+..+.+.|.+... .+ .++..+.-.+.-++++.+ +.++++.+++.. ... | ....+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 34445555555444 12 255566666666666666 455676666665 222 4 234455566778999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 047146 514 EIVMENLVRFEPEGD 528 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~ 528 (608)
++.++.+++.+|++.
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 999999999999986
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.76 E-value=0.068 Score=40.84 Aligned_cols=70 Identities=11% Similarity=0.001 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-----P----LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
+..+...+.+.|+++.|...++.. + -.+....+..+..++.+.|+++.|...++++.++.|+++.+...+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 334555555555555555555443 0 123456778888888999999999999999999999987554443
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.37 Score=40.40 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=76.2
Q ss_pred HHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 047146 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447 (608)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 447 (608)
+....+|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677888887777766 4567788888888888888888777776543 2333344455566655554
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047146 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 520 (608)
+-+..... | -++.-...+.-.|+++++.+++.+.+.-|.... .....|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 43333321 1 133444455567777777777777754332211 223356666666666654
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.46 E-value=0.46 Score=37.92 Aligned_cols=64 Identities=5% Similarity=-0.091 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 492 PDAFVWGALLGACKIHAK---VELAEIVMENLVRFEPEG-DGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
|+..+--...+++.++.+ ..+++.+++.+.+..|.. ......|+-++.+.|++++|+++.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344433334444444333 234455555555544432 2344455555555555555555555554
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.84 Score=38.23 Aligned_cols=104 Identities=12% Similarity=0.099 Sum_probs=62.6
Q ss_pred HHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHH
Q 047146 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346 (608)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 346 (608)
....++|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455677777777776655 3556778888777788888888777776643 2334444455566555555
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC
Q 047146 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387 (608)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 387 (608)
+-+.....|- ++.....+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5444443331 1334444555677777777665544
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.24 Score=52.30 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=51.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 501 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
...|...|+++.|..+.+++...-|.+..+|..|+.+|.+.|+|+.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3557789999999999999999999999999999999999999999999999985
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.54 E-value=0.061 Score=49.08 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=27.8
Q ss_pred HHHHHHHHHHh-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q 047146 464 HYGCMVDLFGR-----AGLIREALDLIKSM-PLVPD--AFVWGALLGACKI-HAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 464 ~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~p~ 526 (608)
.|..|...|.+ .|+.++|.+.|++. .+.|+ ..++......++. .|+.+++.+.++++++..|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 34444444444 24444444444444 33331 3333334444433 25555555555555554443
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.54 E-value=0.14 Score=38.93 Aligned_cols=64 Identities=20% Similarity=0.053 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFE-------PEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+..-.-.+...+...|+++.|..-++.+.+.. +..+.++..|+.+|.+.|++++|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44455677888999999999999999998763 23345799999999999999999999999975
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.19 E-value=1.6 Score=34.39 Aligned_cols=139 Identities=14% Similarity=0.033 Sum_probs=87.5
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHH
Q 047146 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277 (608)
Q Consensus 198 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 277 (608)
.-.|..++..++..+.... .+..-++.++--....-+-+...++++.+-+. ++. ..||++..
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDi--------------s~C~NlKr 79 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL--------------DKCQNLKS 79 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG--------------GGCSCTHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-cCc--------------HhhhcHHH
Confidence 3456666677766666543 24455666665555555555555555444332 221 23555555
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 047146 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356 (608)
Q Consensus 278 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (608)
....+-.+.. +....+.-+.....+|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++..+-+.|+
T Consensus 80 Vi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 80 VVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 5555544432 3445566677788888888888888885442 477888888888888888888888888888777764
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.03 E-value=0.4 Score=37.71 Aligned_cols=64 Identities=5% Similarity=-0.091 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 492 PDAFVWGALLGACKIHAK---VELAEIVMENLVRFEPE-GDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
|+..+--...+++.+..+ ..+++.+++.+.+..|. ....+..|+-++.+.|++++|++..+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344443334444444433 23455555555555543 23345555666666666666666666655
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.89 E-value=1.5 Score=43.50 Aligned_cols=163 Identities=10% Similarity=0.068 Sum_probs=80.2
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHccCCCCCc---hHHHHHHHHHHHhcCChHHHHHHHccCC------CCC----hhhH
Q 047146 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPD---VFIHNALIDMYLKCGNIPSARKVFDEMP------VKN----VVSW 293 (608)
Q Consensus 227 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~----~~~~ 293 (608)
.+...+...|++.+|..++..+...-.+..+. ...+...++.|...+++..|..++.++. .++ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 44555566666666666666665432222111 2455566666777777777766665542 111 1234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChHHHHHHHH----HHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047146 294 NSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLN----SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368 (608)
Q Consensus 294 ~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 368 (608)
..++..+...+++.+|...|.+.... .+..|...+..++. ...-.+..+.-..+.........-++...+..++.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k 301 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVK 301 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHH
Confidence 55566666777777777766665432 11112222211111 11111111111112222222222345566777888
Q ss_pred HhHhc--CCHHHHHHHHhhcCCC
Q 047146 369 MYAKC--GRIDQAFGVFRSMKCR 389 (608)
Q Consensus 369 ~~~~~--g~~~~A~~~~~~~~~~ 389 (608)
+|... .+++.+.+.|.....+
T Consensus 302 ~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 302 LFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHhchHhhhHHHHHHHHHHhcc
Confidence 87654 4567777777765543
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.81 E-value=0.69 Score=36.21 Aligned_cols=89 Identities=13% Similarity=-0.040 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHH
Q 047146 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE---ALDLIKSM-PLV-P--DAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 440 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 512 (608)
..+..+.+.|...... +. |+..+--.+..++.+.....+ ++.+++.. ... | .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444455555554441 22 555555566666777665555 66777666 222 3 12234445577889999999
Q ss_pred HHHHHHHHHhcCCCCCch
Q 047146 513 AEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 513 a~~~~~~~~~~~p~~~~~ 530 (608)
|.+.++.+++..|++..+
T Consensus 93 A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 999999999999998743
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.78 E-value=0.26 Score=39.69 Aligned_cols=53 Identities=13% Similarity=-0.042 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 476 GLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 476 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
++.++|.++|+.+ .-+- ...|......-.+.|+.+.|.+++.+++.+.|.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 5666666666665 1111 566666666677788888888888888888777643
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.47 E-value=0.37 Score=38.81 Aligned_cols=56 Identities=14% Similarity=-0.065 Sum_probs=46.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
..++.++|.++|+.++.....-+.+|...+..-.+.|+.+.|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 33789999999999988744445678888888889999999999999999877765
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.82 E-value=8.3 Score=36.04 Aligned_cols=136 Identities=13% Similarity=-0.007 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHH----HHHHHCCCCCCHhHHHHHH
Q 047146 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF----FDMCQANLRPDGMILVIVL 229 (608)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~t~~~ll 229 (608)
.+.++..-|.+.+++++|.+++.. + ...+.+.|+...+-++- +...+.++++|..+..-++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~----G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS----V-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH----H-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH----H-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455666678899999999998866 2 33456677776665554 5556678889988888888
Q ss_pred HHhhccCCch-HHHHHHHHH----HHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcC
Q 047146 230 SACSKLGDLS-LGIKIHRYI----TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304 (608)
Q Consensus 230 ~~~~~~~~~~-~a~~~~~~~----~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 304 (608)
..+.....-+ .-..+.+.+ .+.+....=|+.....+...|.+.+++.+|+..|-.-..++...+..++.-+...+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 7777655322 122333333 33331122277888889999999999999998884322223356655555444444
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.01 E-value=9.8 Score=35.29 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHH----HHHHHHCCCCCCHhHHHHHH
Q 047146 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS----FFDMCQANLRPDGMILVIVL 229 (608)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~t~~~ll 229 (608)
.|.++..-|.+.+++++|.+++.. + ...+.+.|+...|-++ ++...+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~----g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ----G-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH----H-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH----H-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 466777778899999999999866 2 3345667777666664 45556678888888888887
Q ss_pred HHhhccCCch-HHHHHHHHHH----HccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhc
Q 047146 230 SACSKLGDLS-LGIKIHRYIT----DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303 (608)
Q Consensus 230 ~~~~~~~~~~-~a~~~~~~~~----~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 303 (608)
..+.....-+ .-.++.+.++ +.+....-++..+..+...|.+.|++.+|+..|-.-...|...+..++.-+...
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 7766533211 2233444444 332211227788999999999999999999877533222455555555544444
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.33 E-value=3.5 Score=30.51 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=44.9
Q ss_pred HHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 478 IREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 478 ~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
.=+..+-++.+ ..-|++.+..+.+++|.+.+++..|.++++.+...-.+...+|-.++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 33444444443 67899999999999999999999999999999877555555677665
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.24 E-value=1.9 Score=35.42 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSMP 489 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 489 (608)
.+.---+..+|.+.|++++|+.+++.++
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3444456677777777777777777774
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.14 E-value=21 Score=35.16 Aligned_cols=180 Identities=11% Similarity=0.095 Sum_probs=84.2
Q ss_pred CChHHHHHHHccCC-----CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChHHHHHHHHHHh----cc
Q 047146 273 GNIPSARKVFDEMP-----VK----NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCA----NI 338 (608)
Q Consensus 273 g~~~~A~~~~~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~----~~ 338 (608)
|+++.|++.+-.+. .. .......++..|...|+++...+.+.-+... |..+ .....++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 56666766554332 11 2334556677777777777776666555432 2222 12223333221 22
Q ss_pred CChHHHHH--HHHHHH--HcC-CCC---chhHHHHHHHHhHhcCCHHHHHHHHhhcCC----C-----ChhHHHHHHHHH
Q 047146 339 GWLELGKW--VHTYLD--KNH-INT---DGFIGNALVDMYAKCGRIDQAFGVFRSMKC----R-----DVYSYTAMIVGL 401 (608)
Q Consensus 339 ~~~~~a~~--~~~~~~--~~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~li~~~ 401 (608)
...+.-.. +...+. ..| +-. .......|...|...|++.+|.+++..+.. . -+..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221111 111100 001 001 112234556666666666666666665541 1 123455555666
Q ss_pred HHcCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 402 AIHGKAWKALDIFSEMSQ----VGIEPDE--VTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~----~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
...+++.+|..+++++.. ....|+. ..+...+..+...+++.+|.+.|.++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 666666666666666532 1111211 2334444455556666666666655544
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.95 E-value=2.5 Score=31.22 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 406 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
+.-+..+-++.+....+.|++......+.+|.+.+++..|.++|+.+..+.+- ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 34466777777777888999999999999999999999999999988875443 3456766654
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.84 E-value=17 Score=41.12 Aligned_cols=167 Identities=8% Similarity=-0.021 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC
Q 047146 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340 (608)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 340 (608)
....++..+.+.+..+.+.++..-.+. +...--.+..+|...|++++|.+.|.+.-. |+..+..... .
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~----------~ 881 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA----------V 881 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCS----------S
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhh----------h
Confidence 344566677778888888776655543 444445566788899999999999977522 2222211000 0
Q ss_pred hHHHHHHHHHHHHcC--CCCchhHHHHHHHHhHhcCCHHHHHHHHhhc----CCCCh----hHHHHHHHHHHHcCChHHH
Q 047146 341 LELGKWVHTYLDKNH--INTDGFIGNALVDMYAKCGRIDQAFGVFRSM----KCRDV----YSYTAMIVGLAIHGKAWKA 410 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~~~~~~A 410 (608)
... +..+.... ...-..-|.-++..+.+.|.++.+.++-... ...+. ..|..+..++...|++++|
T Consensus 882 ~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 882 LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 000 00111110 1122334566677777777777666554422 22221 2588888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHH
Q 047146 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445 (608)
Q Consensus 411 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 445 (608)
...+-.+..... -...+..++..++..|..+.-
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 888887776433 345677777777766665543
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.78 E-value=18 Score=33.83 Aligned_cols=168 Identities=13% Similarity=0.016 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCChHHHHHHHHHHh
Q 047146 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF----RRMQGLGLKPDDFTLVCVLNSCA 336 (608)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 336 (608)
.+.++..=|.+.+++++|++++.. -...+.+.|+...+.++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445555567888888888877522 233455667766555544 55566678888887777777776
Q ss_pred ccCChH-HHHHHHHHH----HHcC--CCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 047146 337 NIGWLE-LGKWVHTYL----DKNH--INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409 (608)
Q Consensus 337 ~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 409 (608)
....-+ .=..+.+.+ .+.| ..-|+.....+...|.+.+++.+|+..|-.-.++....+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 554321 112222222 3333 345677778889999999999999998853222233566555544443332111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 410 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
++...-..+ --|.-.+++..|..++....+
T Consensus 186 --------------~dlfiaRaV-L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAV-LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHH-HHHHHhCCHHHHHHHHHHHHH
Confidence 111222222 235556788888777666554
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.61 E-value=35 Score=37.00 Aligned_cols=262 Identities=10% Similarity=-0.015 Sum_probs=119.7
Q ss_pred HhcCCHHHHHHHhcccCCCCCCCC--cchHHHHHHHHHhCCCchHHHHHHHHHHHCCC--C-----CCHhHHH--HHHHH
Q 047146 163 AVCGLIKAVHKLFHFRQHPQAQRD--LVSWTTLIQAYVKMDYPTEAILSFFDMCQANL--R-----PDGMILV--IVLSA 231 (608)
Q Consensus 163 ~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~-----p~~~t~~--~ll~~ 231 (608)
...|+.++++.+++.........+ +..=..+.-+.+..|..+++++++.......- . +....-. .+.-+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 344566666666665322110111 11223334455666666667776666544211 0 0011111 22222
Q ss_pred hhccCCchHHHHHHHHHHHccCCCCCchH----HHHHHHHHHHhcCChHHHHHHHccCC-CCChhh--HHHHHHHHHhcC
Q 047146 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVF----IHNALIDMYLKCGNIPSARKVFDEMP-VKNVVS--WNSMIAGLTHRG 304 (608)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~--~~~li~~~~~~g 304 (608)
+...++ +++...+..++... +.. .--+|...+.-.|+-+....++..+. ..+... .-++.-++...|
T Consensus 465 ~~GS~~-eev~e~L~~~L~dd-----~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 465 AMGSAN-IEVYEALKEVLYND-----SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp STTCCC-HHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred hcCCCC-HHHHHHHHHHHhcC-----CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence 222333 34444444444431 211 11223333445566555555554432 112222 223333455667
Q ss_pred ChhHHHHHHHHHHhCCCCCChHHHH--HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 047146 305 QFKEALDIFRRMQGLGLKPDDFTLV--CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382 (608)
Q Consensus 305 ~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 382 (608)
+.+.+..+++.+.... .|....-. .+.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777777777776531 22222111 23345667778777777777776542 12222222222233345666666777
Q ss_pred HhhcC-CCChhHHH--HHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 383 FRSMK-CRDVYSYT--AMIVGLAIHGKA-WKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 383 ~~~~~-~~~~~~~~--~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
++.+. ..|..+-. ++..+....|.. .+++.++..+.. .+|..+-...+.+
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIA 670 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHH
Confidence 66544 23333322 233334444443 567778888764 4555443333333
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.79 E-value=3 Score=44.08 Aligned_cols=51 Identities=14% Similarity=0.048 Sum_probs=36.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHh
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDM 452 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 452 (608)
-+...|+++-|+++-++... ..|+. .+|..|..+|...|+++.|.-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567777778777777776 46654 47777777888888888877776665
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.53 E-value=2.1 Score=41.66 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh-----CCCccCCc
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE-----RKVKKTPG 564 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 564 (608)
.++.++...|+++++...++.+...+|-+...|..++.+|.+.|+..+|++.|++..+ -|+.|.+.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3445556667777777777777777777666777777777777777777766666542 35555543
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.74 E-value=8.2 Score=30.30 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=41.8
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 486 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
-.+.+-|++.+..+.+++|.+.+|+..|.++++-+...-.+...+|-.++
T Consensus 80 ~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 80 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 33478899999999999999999999999999999877554455777665
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.67 E-value=9.9 Score=27.94 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=63.6
Q ss_pred CCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047146 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315 (608)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 315 (608)
..-++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++...+.+
T Consensus 20 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 345677777777766531 23333333456778999999999999999999999988754 478888999988888
Q ss_pred HHhCCCCCChHHHH
Q 047146 316 MQGLGLKPDDFTLV 329 (608)
Q Consensus 316 m~~~g~~p~~~t~~ 329 (608)
+..+| .|....|.
T Consensus 94 la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 94 LGGSS-DPALADFA 106 (115)
T ss_dssp HHTCS-SHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 88877 56555554
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.40 E-value=30 Score=33.30 Aligned_cols=58 Identities=7% Similarity=-0.109 Sum_probs=25.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDE-----VTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++.++...+.....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 444455555555555555555432111111 1233333344455555555555544433
No 256
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=84.31 E-value=15 Score=38.25 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHh
Q 047146 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199 (608)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 199 (608)
-++|-.+.|+|++++|.++.++.... .+.-...+-..+..|+.
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 35566677777777777776652211 11111345555555553
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.18 E-value=11 Score=27.85 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=63.1
Q ss_pred CCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047146 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315 (608)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 315 (608)
..-++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++...+.+
T Consensus 21 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 346677777777766531 23333333455778999999999999999999999988754 477888888888888
Q ss_pred HHhCCCCCChHHHH
Q 047146 316 MQGLGLKPDDFTLV 329 (608)
Q Consensus 316 m~~~g~~p~~~t~~ 329 (608)
+...| .|....|.
T Consensus 95 la~sg-~p~~q~Fa 107 (116)
T 2p58_C 95 LARSQ-DPRIQTFV 107 (116)
T ss_dssp HTTCC-CHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 88776 56555554
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.12 E-value=9.5 Score=31.37 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=14.1
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHH
Q 047146 225 LVIVLSACSKLGDLSLGIKIHRYITD 250 (608)
Q Consensus 225 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 250 (608)
+..+..++...+++..|...|+.+++
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44445555555666666655555443
No 259
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=83.87 E-value=20 Score=30.77 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=31.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 047146 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441 (608)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 441 (608)
+-...+.++.+.|+.+....+.+.+..++...-...+.++...+.. ++...+.++.. .++..+-...+.++.+.+.
T Consensus 97 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 97 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 3334444444444433333333333444444444444444444442 23333333332 3444444444444444443
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.53 E-value=7.9 Score=37.51 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHh----hcCCCCChhH
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR----VYNLQPQTEH 464 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 464 (608)
..++..+...|++++++..+..+... -+-+...+..++.++...|+..+|.+.|+...+ +.|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556667778888888777777764 133666888888888888888888887777644 3577776654
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.13 E-value=29 Score=32.12 Aligned_cols=166 Identities=7% Similarity=-0.023 Sum_probs=102.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI----FSEMSQVGIEPDEVTFVGVLSACSHA 439 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~ 439 (608)
.++..=|.+.+++++|.+++.. -...+.++|+...|.++ ++-..+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 4566678888899999887553 23446667877665554 55556678888888888777776553
Q ss_pred cc-----HHHHHHHHHHhHhhcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CC
Q 047146 440 GL-----VEEGCKHFLDMSRVYNL--QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH---AK 509 (608)
Q Consensus 440 g~-----~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---~~ 509 (608)
.. .+-..+..+...+ .|- .-++.....+...|.+.|++.+|...|-.. ..-|...+..++.-+... |.
T Consensus 106 p~~~~~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIK-FSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHH-TSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCchHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCCCC
Confidence 21 1112222222222 222 236778888999999999999999877632 112455565555444444 44
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..++--++ ...+--|.-.|+...|..+++...+
T Consensus 184 ~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 43332221 2233446678899999999888754
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.95 E-value=12 Score=27.53 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
..++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555554443 22222222345667899999999999999999999977744 467888888888878877
Q ss_pred CCCCCCHHHHH
Q 047146 420 VGIEPDEVTFV 430 (608)
Q Consensus 420 ~g~~p~~~~~~ 430 (608)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 75 55444443
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.63 E-value=5.4 Score=31.27 Aligned_cols=62 Identities=15% Similarity=0.271 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 407 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
.-+..+-++.+....+.|++......+.+|.+.+++..|.++|+.++.+.+ +...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 345666677777778899999999999999999999999999999887543 44556776664
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.50 E-value=6.4 Score=44.48 Aligned_cols=65 Identities=6% Similarity=-0.189 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG-----AYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
..|..++..+.+.+.++.+.++...+++..+.+.. .|..+...+...|++++|...+-.+.+...
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 34555666666777777777776666655432221 455666666777777777666666654443
No 265
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.42 E-value=22 Score=30.19 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCC
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 305 (608)
|..+....+..+.+.+..+....+.+.+..++...-...+.++...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 344444444444444443333333333334444333333444444443
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.05 E-value=16 Score=29.09 Aligned_cols=70 Identities=7% Similarity=-0.012 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 459 QPQTEHYGCMVDLFGRAGLIR---EALDLIKSM-PLVP-DA-FVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 459 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.|+..+--.+..++.++...+ +++.+++.. ...| +. ...-.+.-++.+.|++++|++..+.+++.+|++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 345555444555555555433 455555555 2223 22 2333455678999999999999999999999986
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.85 E-value=17 Score=32.61 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=65.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChh----HHHHHHHHHHh
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE----HYGCMVDLFGR 474 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~ 474 (608)
...+.|..++|++....-++. .| |...-..++..+|-.|++++|.+-++...+ +.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 445667777777777776664 44 555666667777777888888777776655 344432 33333322
Q ss_pred cCCHHHHH-HHHHhC--C--CCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 475 AGLIREAL-DLIKSM--P--LVPDAFVWGALLGA--CKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 475 ~g~~~~A~-~~~~~~--~--~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
+... ++|..- + +.....-...++.+ ....|+.++|..+-+++.+.-|..+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 122211 1 11122223333333 34567888888887777777766654
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=81.73 E-value=24 Score=30.21 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=34.5
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 358 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
++..+-...+.++.+.|..+....+...+..++...-...+.++.+.+. .++...+.++..
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 4444555556666666655444444444555666666666666666665 445555555554
No 269
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=81.29 E-value=47 Score=34.48 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=16.1
Q ss_pred HhcCCHHHHHHHHHhCCCCCC
Q 047146 473 GRAGLIREALDLIKSMPLVPD 493 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~p~ 493 (608)
...|+++.|++.++++++-|.
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC
T ss_pred HHcCCHHHHHHHHHhCCCCCC
Confidence 677888888888888866663
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.78 E-value=14 Score=33.25 Aligned_cols=17 Identities=0% Similarity=-0.060 Sum_probs=8.9
Q ss_pred HHhHhcCCHHHHHHHHh
Q 047146 368 DMYAKCGRIDQAFGVFR 384 (608)
Q Consensus 368 ~~~~~~g~~~~A~~~~~ 384 (608)
...++.|+.+-+..+++
T Consensus 224 ~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33344556655555555
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.21 E-value=15 Score=27.01 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
..++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555555443 22222222345667899999999999999999999987754 356777888888878777
Q ss_pred CCCCCCHHHHH
Q 047146 420 VGIEPDEVTFV 430 (608)
Q Consensus 420 ~g~~p~~~~~~ 430 (608)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 55444443
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.61 E-value=18 Score=30.80 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 507 HAKVELAEIVMENLVRF--EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
.++...+..+|..+... +-..+..|...+..+...|++++|.++++.=.+++-+|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33355566666666543 34444556666666666666666666666665555444
No 273
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.42 E-value=16 Score=28.69 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.+.-++.+.|++++|++..+.+++..|++.
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 344455566666666666666666666664
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.03 E-value=4.7 Score=36.23 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=43.7
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 470 DLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
..+.+.|.+++|++....- .-.| |...-..++..+|-.|++++|.+-++...+++|...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3456778888888766654 4455 666666777888888888888888888888888764
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.73 E-value=14 Score=36.40 Aligned_cols=59 Identities=7% Similarity=-0.058 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-----PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
...+.+.|.+.|++++|.+.+.++ +..--...+..+++.+...+++..+...++++...
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344555555555555555555544 11112334444555555555555555555555443
No 276
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=74.51 E-value=1e+02 Score=33.49 Aligned_cols=28 Identities=7% Similarity=-0.084 Sum_probs=23.0
Q ss_pred eeHHHHHHHHhccCCcHHHHHHHHHHHH
Q 047146 118 YTLPYVLKACWQSQSLRVGQQVHAYSMK 145 (608)
Q Consensus 118 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 145 (608)
.-|..+++...+.++.+.+.++|..+..
T Consensus 231 ~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 231 CDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3578888888889999999999988764
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.06 E-value=32 Score=33.68 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=65.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHH--HH
Q 047146 362 IGNALVDMYAKCGRIDQAFGVFRSMKC------RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ---VGIEPDEVT--FV 430 (608)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~g~~p~~~~--~~ 430 (608)
+...+.+.|.+.|+++.|.+.|.++.. .-+..+-..+..+...+++..+...+.+... .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 446788899999999999999988763 2346677788888889999999988888754 232333321 11
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhh
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRV 455 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~ 455 (608)
.-...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122345678888888888877664
No 278
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=68.72 E-value=73 Score=29.40 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=44.6
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 485 IKSMPLVPD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 485 ~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
|...+++|. .-++...+..+.+.+++..|..+.++++++.|... ..++|.+++....+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 444466663 34777788889999999999999999999998643 345688888777543
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.66 E-value=37 Score=27.44 Aligned_cols=79 Identities=9% Similarity=0.037 Sum_probs=49.8
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 480 EALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF--EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 480 ~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.+.+.|... ..+.|+.....-+.-.....+ +..+|..+... +-..+..|...+..+...|++++|.++++.=.+
T Consensus 53 rc~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 53 HLMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444 334465554444433333333 67777777654 455566788888888888888888888888777
Q ss_pred CCCcc
Q 047146 557 RKVKK 561 (608)
Q Consensus 557 ~~~~~ 561 (608)
++-+|
T Consensus 130 ~~A~P 134 (152)
T 4a1g_A 130 NQAEP 134 (152)
T ss_dssp TTCBS
T ss_pred cCCcc
Confidence 66655
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.48 E-value=36 Score=30.44 Aligned_cols=82 Identities=13% Similarity=0.029 Sum_probs=41.5
Q ss_pred HHHHHhcCChHHHHHHHccCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHH--HHHHHHHHhccC
Q 047146 266 IDMYLKCGNIPSARKVFDEMP----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT--LVCVLNSCANIG 339 (608)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 339 (608)
+...+..|+.+-+..+++... ..+...++.+.. .+..+......++++.+.+.|..++... -.+.+...+..|
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 334455677777766665422 223223333333 3445665556677777777776655421 112233344456
Q ss_pred ChHHHHHHH
Q 047146 340 WLELGKWVH 348 (608)
Q Consensus 340 ~~~~a~~~~ 348 (608)
+.+.+..++
T Consensus 231 ~~~~v~~Ll 239 (285)
T 1wdy_A 231 HLGLVQRLL 239 (285)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 655444433
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=64.98 E-value=50 Score=27.10 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 491 VPDAFVWGALLGACKIHAKVELAEIVMENLVRF--EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 491 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
+.|+.....-+.-....++ +..+|..+... +...+..|...+..+...|++.+|.++++.=.+++.+|
T Consensus 60 knD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp TTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3455444444433222333 45566666543 44455567777777777777777777777766666554
No 282
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=64.60 E-value=80 Score=28.31 Aligned_cols=17 Identities=6% Similarity=-0.146 Sum_probs=6.2
Q ss_pred chhHHHHHHHHhHhcCC
Q 047146 359 DGFIGNALVDMYAKCGR 375 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~ 375 (608)
+..+-...+.++.+.|+
T Consensus 141 ~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 141 STNVRRATAFAISVIND 157 (280)
T ss_dssp CHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 33333344444444443
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=63.87 E-value=47 Score=27.79 Aligned_cols=16 Identities=19% Similarity=-0.008 Sum_probs=10.0
Q ss_pred HHhcCCHHHHHHHhcc
Q 047146 162 YAVCGLIKAVHKLFHF 177 (608)
Q Consensus 162 ~~~~g~~~~A~~~~~~ 177 (608)
.+..|+.+....++..
T Consensus 12 A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 12 AANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHTTCHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHc
Confidence 3456667766666655
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=62.27 E-value=47 Score=32.33 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=10.7
Q ss_pred HHHHHhcCCHHHHHHHhcc
Q 047146 159 MRLYAVCGLIKAVHKLFHF 177 (608)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~ 177 (608)
+...++.|+.+-+.-+++.
T Consensus 84 L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhC
Confidence 4444555666666555554
No 285
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=60.92 E-value=93 Score=27.85 Aligned_cols=85 Identities=7% Similarity=-0.054 Sum_probs=35.0
Q ss_pred cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc-cHHHHHHHHHHhHhhcCCCCChhH
Q 047146 386 MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG-LVEEGCKHFLDMSRVYNLQPQTEH 464 (608)
Q Consensus 386 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~ 464 (608)
+..++...-...+.++...++. .+...+.++.. .++...-...+.++...| ....+...+..+.. .++..+
T Consensus 137 l~d~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~v 208 (280)
T 1oyz_A 137 AFDKSTNVRRATAFAISVINDK-ATIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ----DKNEEV 208 (280)
T ss_dssp TTCSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT----CSCHHH
T ss_pred hhCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc----CCCHHH
Confidence 3455555555555555555542 23333333333 344443333444443333 11223333333322 234444
Q ss_pred HHHHHHHHHhcCCH
Q 047146 465 YGCMVDLFGRAGLI 478 (608)
Q Consensus 465 ~~~l~~~~~~~g~~ 478 (608)
-...+.++.+.|..
T Consensus 209 R~~A~~aL~~~~~~ 222 (280)
T 1oyz_A 209 RIEAIIGLSYRKDK 222 (280)
T ss_dssp HHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHhCCH
Confidence 44455555555543
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.38 E-value=38 Score=30.78 Aligned_cols=12 Identities=0% Similarity=0.038 Sum_probs=4.7
Q ss_pred hcCChHHHHHHH
Q 047146 271 KCGNIPSARKVF 282 (608)
Q Consensus 271 ~~g~~~~A~~~~ 282 (608)
..|+.+-+.-++
T Consensus 138 ~~~~~~~v~~Ll 149 (285)
T 3kea_A 138 MLNDVSIVSYFL 149 (285)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 334444333333
No 287
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=56.31 E-value=1.2e+02 Score=27.88 Aligned_cols=239 Identities=13% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCceeHH---HHHHHHhccCCcHHHHHHHHHHHHhCcCCcH--------------------------
Q 047146 102 IALYREMLIKGLLPNTYTLP---YVLKACWQSQSLRVGQQVHAYSMKTALLSNV-------------------------- 152 (608)
Q Consensus 102 ~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------------------------- 152 (608)
+++.+.+.+.|..||...-. +-|...+..|+.+ +.+.+++.|..++.
T Consensus 38 ~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (337)
T 4g8k_A 38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLS 113 (337)
T ss_dssp HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHH----HHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhh
Q ss_pred ---------hHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHH------------HHHHHHHhCCCchHHHHHHH
Q 047146 153 ---------YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT------------TLIQAYVKMDYPTEAILSFF 211 (608)
Q Consensus 153 ---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~ 211 (608)
....+-+...+..|..+-+..+++. +..++...-. +.+...++.|+.+-+..+++
T Consensus 114 ~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~----ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~ 189 (337)
T 4g8k_A 114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR----GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 189 (337)
T ss_dssp TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT----TCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHH
T ss_pred ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHc----CCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHh
Q ss_pred HHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC----C
Q 047146 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP----V 287 (608)
Q Consensus 212 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~ 287 (608)
+.-..--..|..-.+.+..++.. +.......+.+.+++.|..+........+-+...+..|..+.+..+++.-. .
T Consensus 190 ~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~ 268 (337)
T 4g8k_A 190 EMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 268 (337)
T ss_dssp HSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTC
T ss_pred ccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccC
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchh
Q 047146 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361 (608)
Q Consensus 288 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (608)
+|..-++.|..+..... .++.+.+++.|..+|..+ .+...+..|+.+ +.+.+++.|-.+|..
T Consensus 269 ~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 269 TDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDFH 330 (337)
T ss_dssp BCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC---
T ss_pred cCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCCC
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.75 E-value=70 Score=31.95 Aligned_cols=63 Identities=10% Similarity=0.011 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh--hHH-HHHHHHHHhcCCHHHHHHHHHhC
Q 047146 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT--EHY-GCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 426 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
...++.+++.|...+.+++|..+..+..--....++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3578888899999999999999988874200001121 222 34567777889999998888765
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.17 E-value=39 Score=29.40 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=22.4
Q ss_pred hccCCcHHHHHHHHHHHHhCcCCcHh--HHHHHHHHHHhcCCHHHHHHHhcc
Q 047146 128 WQSQSLRVGQQVHAYSMKTALLSNVY--VFNTLMRLYAVCGLIKAVHKLFHF 177 (608)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 177 (608)
+..|+.+..+.+++...+.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 34455555555555444444333221 112233334445555555555543
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.97 E-value=64 Score=25.16 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=41.8
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCRDV---YSYTAMIVGLAIHGK--AWKALDIFSEMSQVGIEPDE 426 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~ 426 (608)
+.++.=|...|+.++|.+.++++..|.. ....++..++-+.+. .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 5678888888999999999999876622 334444445554432 35577777777776654433
No 291
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=52.03 E-value=2.2e+02 Score=29.36 Aligned_cols=366 Identities=9% Similarity=-0.073 Sum_probs=183.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 047146 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233 (608)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 233 (608)
.-+.-+..+.+.+++......+.. ++.+...-.....+....|+..+|......+-..| ......+..++..+.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~ 147 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWR 147 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Confidence 345556667777888887775543 22344444456667777888777777777765544 233445566666666
Q ss_pred ccCCchHH--HHHHHHHHHccC---------CCCCch-HHHHHHHHHHHhcCChHHHHHHHccCCCCChh---hHHHHHH
Q 047146 234 KLGDLSLG--IKIHRYITDNHF---------NLSPDV-FIHNALIDMYLKCGNIPSARKVFDEMPVKNVV---SWNSMIA 298 (608)
Q Consensus 234 ~~~~~~~a--~~~~~~~~~~~~---------~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~ 298 (608)
+.|.+... .+-++.+...+- .+.|+. .....++.++.+ ...+....... .++.. .+..-+.
T Consensus 148 ~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (618)
T 1qsa_A 148 ASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFA 223 (618)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHH
Confidence 55544321 111222222210 000011 112222222222 22222222222 11211 1111223
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHH----HHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC
Q 047146 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN----SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374 (608)
Q Consensus 299 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 374 (608)
-+.+ .+.+.|...+....... ..+......+-. .....+....+...+....... .+.......+..-.+.|
T Consensus 224 rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 224 SVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTG 299 (618)
T ss_dssp HHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHT
T ss_pred HHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCC
Confidence 3333 37789999998886543 233333322222 2233443455555555544333 33333444555556779
Q ss_pred CHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 047146 375 RIDQAFGVFRSMKCRD---VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451 (608)
Q Consensus 375 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 451 (608)
+++.|...|+.|.... ....-=+..++...|+.++|..+|+++... . +|-.++. ..+.|..-.
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lA-a~~Lg~~~~------- 365 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVA-AQRIGEEYE------- 365 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHH-HHHTTCCCC-------
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHH-HHHcCCCCC-------
Confidence 9999999999998532 111222345677889999999999998752 1 3333332 222221100
Q ss_pred hHhhcCCCCC-hh-----HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 047146 452 MSRVYNLQPQ-TE-----HYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525 (608)
Q Consensus 452 ~~~~~~~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 525 (608)
. ......+. .. .--.-+..+...|....|...+.......+......+.......|..+.+.....+....+.
T Consensus 366 ~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~ 444 (618)
T 1qsa_A 366 L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDH 444 (618)
T ss_dssp C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTC
T ss_pred C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcc
Confidence 0 00001110 00 11223456778899999988877762223444444555556778888887766554332220
Q ss_pred ---CCCchHHHHHHHHHhCCChHHHH
Q 047146 526 ---EGDGAYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 526 ---~~~~~~~~l~~~~~~~g~~~~A~ 548 (608)
.-|..|...+.-+.+.-.++..+
T Consensus 445 ~~~~~P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 445 LEERFPLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp HHHHSCCTTHHHHHHHHTTSSSCHHH
T ss_pred hhhhCCcchHHHHHHHHHHcCCCHHH
Confidence 11335666666666665555443
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.96 E-value=55 Score=28.23 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHhcc
Q 047146 158 LMRLYAVCGLIKAVHKLFHF 177 (608)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~ 177 (608)
.+...++.|+.+-+..+++.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHc
Confidence 34444555565555555544
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.76 E-value=32 Score=31.31 Aligned_cols=15 Identities=0% Similarity=0.025 Sum_probs=7.6
Q ss_pred HHHHHHhCCCCCChH
Q 047146 312 IFRRMQGLGLKPDDF 326 (608)
Q Consensus 312 ~~~~m~~~g~~p~~~ 326 (608)
+++.+.+.|..|+..
T Consensus 210 ~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 210 MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTTSCBCSTTT
T ss_pred HHHHHHHcCCCCCCC
Confidence 344445556555544
No 294
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=50.52 E-value=54 Score=28.36 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=10.3
Q ss_pred HHHHHhcCCHHHHHHHhcc
Q 047146 159 MRLYAVCGLIKAVHKLFHF 177 (608)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~ 177 (608)
+...+..|+.+-+..+++.
T Consensus 81 L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3344455666665555554
No 295
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.35 E-value=1.2e+02 Score=25.84 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 461 (608)
.|-..+..+ ..+...++..+|..|...|+--.. .-|......+...|++++|.++|..-++ .+-.|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 344444433 234466788888888887766554 3666667777778888888888887777 455663
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.09 E-value=85 Score=27.08 Aligned_cols=25 Identities=8% Similarity=-0.270 Sum_probs=12.1
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCC
Q 047146 196 AYVKMDYPTEAILSFFDMCQANLRP 220 (608)
Q Consensus 196 ~~~~~g~~~~a~~~~~~m~~~~~~p 220 (608)
..++.|+.+-+..+++.+.+.|..+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3344555555555555444444333
No 297
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=48.00 E-value=1.2e+02 Score=25.29 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcC
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 304 (608)
+..+-...+.++.+.++.+....+...+..++...-...+.++...|
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 44455555555555554333333333333344444344444444444
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=46.78 E-value=1.2e+02 Score=25.70 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=41.7
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCCh-----HHHHHHHHHHHHcCC
Q 047146 293 WNSMIAGLT---HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL-----ELGKWVHTYLDKNHI 356 (608)
Q Consensus 293 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~ 356 (608)
.--+|+++. +..+.+.|+-.+-+|++.| .|....-..++.+.-..|.- ..|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334555554 4588999999999999999 88777777777777666542 233334444444443
No 299
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=45.61 E-value=71 Score=26.96 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCCCCHH--HHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHH
Q 047146 478 IREALDLIKSMPLVPDAF--VWG-----ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546 (608)
Q Consensus 478 ~~~A~~~~~~~~~~p~~~--~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 546 (608)
++.|+.+|+.++-.-|.. ... ..+..|.+.|.+++|.+++++.....+++...-.-|..+-.+...+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~ 169 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHS 169 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcH
Confidence 456777777773222211 111 223568888888888888888777766665555555555444444333
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.02 E-value=37 Score=30.14 Aligned_cols=86 Identities=12% Similarity=-0.058 Sum_probs=49.2
Q ss_pred HHHcCCCccH-HHHHHHHHHCCCCCCce-------eHHHHHHHHh--ccCCcHHHHHHHHHHHHhC---------cCCcH
Q 047146 92 CLSNANPLEA-IALYREMLIKGLLPNTY-------TLPYVLKACW--QSQSLRVGQQVHAYSMKTA---------LLSNV 152 (608)
Q Consensus 92 ~~~~~~~~~~-~~~~~~m~~~g~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~ 152 (608)
..++.|+.+. ..+++.+.+.|..++.. -.+.+..++. +.|+.+.++.+++.-...+ +....
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 3446778887 77888777777666633 2344444442 5678877777766543311 00000
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhcc
Q 047146 153 YVFNTLMRLYAVCGLIKAVHKLFHF 177 (608)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~ 177 (608)
....+.+...+..|+.+-+..+++.
T Consensus 91 ~~g~t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 91 YRGQTALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp EESBCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 0122334455667888877777775
No 301
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.98 E-value=60 Score=26.23 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=41.6
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCRDV---YSYTAMIVGLAIHGK--AWKALDIFSEMSQVGIEPDE 426 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~ 426 (608)
+.++.=|...|+.++|.+.++++..|.. .+..++..++-+.+. .+.+..++..+...|+-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 5678888888999999999999876532 334444445554322 34567777777776654443
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.65 E-value=87 Score=27.16 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 494 AFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 494 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
+..|......+...|++++|..+++..++.
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 334444444444455555555555544443
No 303
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.14 E-value=1.5e+02 Score=28.70 Aligned_cols=138 Identities=12% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcccc
Q 047146 368 DMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE---VTFVGVLSACSHAGL 441 (608)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~ 441 (608)
...+..|+.+-+..+++.-.. .+..-.+.+ ...+..|..+- ++.+.+.|..++. ...+ .+...+..|.
T Consensus 217 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~~~ 290 (437)
T 1n11_A 217 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPL-HLAAQEGHAEM----VALLLSKQANGNLGNKSGLT-PLHLVAQEGH 290 (437)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHH----HHHHHTTTCCTTCCCTTCCC-HHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHCCCHHH----HHHHHhcCCCCCCCCCCCCC-HHHHHHHcCC
Confidence 344556777766666654322 122222222 22334555443 3333444444332 1111 2233344566
Q ss_pred HHHHHHHHHHhHhhcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047146 442 VEEGCKHFLDMSRVYNLQPQT---EHYGCMVDLFGRAGLIREALDLIKSM-PL-VPDAFVWGALLGACKIHAKVELAEIV 516 (608)
Q Consensus 442 ~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~ 516 (608)
.+-+..+++. |..++. ...+ .+...+..|+.+-+.-+++.- .+ ..|..-++. +......|+.+-...+
T Consensus 291 ~~~~~~Ll~~-----g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~-L~~A~~~g~~~iv~~L 363 (437)
T 1n11_A 291 VPVADVLIKH-----GVMVDATTRMGYT-PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSP-LHQAAQQGHTDIVTLL 363 (437)
T ss_dssp HHHHHHHHHH-----TCCTTCCCSSCCC-HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-----CccCCCCCCCCCC-HHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHCChHHHHHHH
Confidence 5544443332 333321 1112 233345667777666666543 11 112222222 2333456776655555
Q ss_pred HH
Q 047146 517 ME 518 (608)
Q Consensus 517 ~~ 518 (608)
++
T Consensus 364 l~ 365 (437)
T 1n11_A 364 LK 365 (437)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 304
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.82 E-value=57 Score=30.73 Aligned_cols=52 Identities=12% Similarity=-0.001 Sum_probs=23.7
Q ss_pred HHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 047146 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214 (608)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 214 (608)
+...+..|+.+-+..+++. +..++...-.+.+...+..|+.+-+..+++...
T Consensus 57 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 108 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASV----GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAK 108 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHH----CCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHC----CCCccccCCCCHHHHHHHcCCHHHHHHHHHhcc
Confidence 3444455666666555555 332222111223333445566555555555433
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.31 E-value=1.1e+02 Score=26.84 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=15.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 047146 296 MIAGLTHRGQFKEALDIFRRMQG 318 (608)
Q Consensus 296 li~~~~~~g~~~~A~~~~~~m~~ 318 (608)
-+..+....++++|.+++++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35566677777777777776543
No 306
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=42.03 E-value=2.2e+02 Score=26.57 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhccc
Q 047146 156 NTLMRLYAVCGLIKAVHKLFHFR 178 (608)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~~~~m 178 (608)
..++.=|...|+.++|.+.++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 44555566666777776666664
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.38 E-value=84 Score=26.98 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCCCCceeH--HHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhH---HHHHHHHHHhcCCHHHHHHHhc
Q 047146 102 IALYREMLIKGLLPNTYTL--PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV---FNTLMRLYAVCGLIKAVHKLFH 176 (608)
Q Consensus 102 ~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~ 176 (608)
+++++.+.+.|..++.... .+.+...+..|+.+. .+.+++.|..++... ....+...+..|+.+-+..+++
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~ 97 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK 97 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHH
Confidence 4445555556655543311 123444445555543 334444554332111 2233444455566665555554
Q ss_pred c
Q 047146 177 F 177 (608)
Q Consensus 177 ~ 177 (608)
.
T Consensus 98 ~ 98 (240)
T 3eu9_A 98 Y 98 (240)
T ss_dssp T
T ss_pred c
Confidence 4
No 308
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.19 E-value=86 Score=26.99 Aligned_cols=47 Identities=11% Similarity=-0.008 Sum_probs=23.4
Q ss_pred HhccCCcHHHHHHHHHHHHhCcCCcHh--HHHHHHHHHHhcCCHHHHHHHhcc
Q 047146 127 CWQSQSLRVGQQVHAYSMKTALLSNVY--VFNTLMRLYAVCGLIKAVHKLFHF 177 (608)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 177 (608)
.+..|+.+ +.+.+++.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 18 A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 18 AAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 34445544 333444455443321 112334445566777777777665
No 309
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=39.77 E-value=1.6e+02 Score=27.07 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=43.6
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 485 IKSMPLVPD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 485 ~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
|...++.|. .-++...+..+.+.+++..|..+.++++++.|+.. ..++|.+++....+.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~ 247 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKN 247 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 444466663 34677788889999999999999999999987632 335577777777544
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.69 E-value=99 Score=27.14 Aligned_cols=30 Identities=13% Similarity=-0.173 Sum_probs=19.2
Q ss_pred CCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 527 GDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.+......+..+.+.|+-++|.++|=+...
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 334455556667777777777777666543
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.21 E-value=2e+02 Score=31.53 Aligned_cols=28 Identities=7% Similarity=-0.397 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
.|..++..+-+.+-++-+.++.+.+++.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 5566666666777777777776666654
No 312
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=36.09 E-value=1.5e+02 Score=24.98 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=34.7
Q ss_pred HHHHHHHH---hcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 047146 294 NSMIAGLT---HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339 (608)
Q Consensus 294 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 339 (608)
--+|+++. +..+.+.|+-.+-+|++.|-.|....-..++.+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34555554 45889999999999999998887777777777665555
No 313
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.53 E-value=1.4e+02 Score=25.50 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=5.7
Q ss_pred HhcCCHHHHHHHhc
Q 047146 163 AVCGLIKAVHKLFH 176 (608)
Q Consensus 163 ~~~g~~~~A~~~~~ 176 (608)
+..|+.+-+..+++
T Consensus 48 ~~~g~~~~v~~Ll~ 61 (231)
T 3aji_A 48 CSAGHTEIVEFLLQ 61 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 33444444444433
No 314
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=35.53 E-value=3.2e+02 Score=27.37 Aligned_cols=68 Identities=9% Similarity=0.030 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHH----HHH-HHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 491 VPDAFVWGALLGACKIHAKVELAEIV----MEN-LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 491 ~p~~~~~~~l~~~~~~~~~~~~a~~~----~~~-~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..|......+...+...|..++-.++ ++. +.+..|++......|-..|.+.|++-+|-+++-.+-..+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 45666666677777777765544321 222 223446666677788888899999999999999998764
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.10 E-value=1.2e+02 Score=25.14 Aligned_cols=83 Identities=7% Similarity=-0.063 Sum_probs=36.1
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCC-CchHHHHHHHHHHHhcCC
Q 047146 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS-PDVFIHNALIDMYLKCGN 274 (608)
Q Consensus 196 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~ 274 (608)
..+..|+.+.+..++..-...--..|..-.+. +...+..|+.+.+. .+++.|..+. ++..- .+.+...+..|+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g-~t~l~~A~~~~~ 84 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIEIAK----ALIDRGADINLQNSIS-DSPYLYAGAQGR 84 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHHHHH----HHHHTTCCTTCCCTTS-CCHHHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHHHHH----HHHHcCCCCCCCCCCC-CCHHHHHHHcCC
Confidence 34556777666665543210000112222222 33344556655444 3444443321 11111 223344456677
Q ss_pred hHHHHHHHcc
Q 047146 275 IPSARKVFDE 284 (608)
Q Consensus 275 ~~~A~~~~~~ 284 (608)
.+-+..+++.
T Consensus 85 ~~~~~~Ll~~ 94 (201)
T 3hra_A 85 TEILAYMLKH 94 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777766643
No 316
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.00 E-value=1.9e+02 Score=24.67 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=37.0
Q ss_pred hhHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC
Q 047146 291 VSWNSMIAGLT---HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340 (608)
Q Consensus 291 ~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 340 (608)
..+--+|+++. +..+.+.|+-.+-+|++.|-.|....-..++.+.-..|.
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 34444556654 458899999999999999988887777777777665553
No 317
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.50 E-value=2.5e+02 Score=23.79 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=29.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 441 (608)
.+..+++.|+-++-+|.+.| .|....-..++.+...-|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 35688999999999999999 7766666666666655554
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.18 E-value=1.2e+02 Score=23.98 Aligned_cols=42 Identities=14% Similarity=-0.041 Sum_probs=18.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047146 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439 (608)
Q Consensus 398 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 439 (608)
+..+...+..-.|.++++.+.+.+...+..|....+..+...
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 333333333444555555554444334444444444444333
No 319
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.01 E-value=2.2e+02 Score=22.93 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC
Q 047146 408 WKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461 (608)
Q Consensus 408 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 461 (608)
+++.++|..|...|+--.. .-|......+...|++++|.++|..-++ .+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 3477888888887776654 3666667777788888888888888777 466663
No 320
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.80 E-value=2.6e+02 Score=23.56 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=31.8
Q ss_pred HHHHH---HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 047146 397 MIVGL---AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440 (608)
Q Consensus 397 li~~~---~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 440 (608)
+|+++ .+..+++.|+-++-+|.+.|..|....-..++.+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44554 356889999999999999988887666666666655544
No 321
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.71 E-value=84 Score=24.48 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=11.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 047146 295 SMIAGLTHRGQFKEALDIFRRM 316 (608)
Q Consensus 295 ~li~~~~~~g~~~~A~~~~~~m 316 (608)
.++.-|...|+.++|...++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 322
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.89 E-value=3e+02 Score=23.52 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=33.7
Q ss_pred HHHHHH---HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 047146 396 AMIVGL---AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441 (608)
Q Consensus 396 ~li~~~---~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 441 (608)
-+|+++ .+..+++.|+-++-+|.+.|..|....-..++.+...-|.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 344554 3568999999999999999988877666666666655553
No 323
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=26.12 E-value=2.4e+02 Score=26.48 Aligned_cols=82 Identities=13% Similarity=0.158 Sum_probs=49.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C------
Q 047146 460 PQTEHYGCMVDLFGRAGLIREALDLIKSM-------P-LVPDAFVWGALLGACKIHAKVELAEIVMENLVRF-E------ 524 (608)
Q Consensus 460 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~------ 524 (608)
..+.-|..+...+.|.+++.+|++.+.+. + .+-|...|.-++..... .--.+++.+.+. +
T Consensus 294 ~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAne-----liP~~~k~a~~~~~~~G~~~ 368 (472)
T 3re2_A 294 HHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIAND-----LIPNILKDAVAKADPSGTGS 368 (472)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHT-----HHHHHHHHHHTCC-------
T ss_pred CCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH-----HhhHHHHhhhhccCCCCcch
Confidence 34566788888899999999999888776 1 22366677666543311 111223322222 1
Q ss_pred ---CCCCchHHHHHHHHHhCCChHH
Q 047146 525 ---PEGDGAYILMTNIYSSKNRWKE 546 (608)
Q Consensus 525 ---p~~~~~~~~l~~~~~~~g~~~~ 546 (608)
-.++..+..|...|-...+|+|
T Consensus 369 ~siL~DpecfA~LLrFYDgIC~WEE 393 (472)
T 3re2_A 369 TNLTSDPKFFALVLQFYDGICLWEE 393 (472)
T ss_dssp -CGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhccChHHHHHHHHHhhcceeccc
Confidence 2345677788877766666654
No 324
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.91 E-value=1.8e+02 Score=24.71 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=9.8
Q ss_pred HHHHHhcCCHHHHHHHhcc
Q 047146 159 MRLYAVCGLIKAVHKLFHF 177 (608)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~ 177 (608)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455555555555544
No 325
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.49 E-value=4e+02 Score=24.53 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh----HhcCCHHHHHHHHhh
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY----AKCGRIDQAFGVFRS 385 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~ 385 (608)
++++.+.+.|+.|...++..++..+++.=.++.+..+++.+...|...-..+.-+++..+ .++.+.++...++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 455666777888888888888888887777888888888887777543333333333322 223456666666655
No 326
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=25.30 E-value=2.9e+02 Score=22.83 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=48.1
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---------------C-CH-HHHHHHHH
Q 047146 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE---------------P-DE-VTFVGVLS 434 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~---------------p-~~-~~~~~ll~ 434 (608)
-.|.+..+.-++.....-...-|..+ +|-+.+++..|+..++.+.+..+. | |. ..++.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 45677777666665432222222222 455677788888777777754443 1 22 24556666
Q ss_pred HHhccccHHHHHHHHHHhH
Q 047146 435 ACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~ 453 (608)
.|...|+.++|+..+..--
T Consensus 123 lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhhhc
Confidence 7888888888888776553
No 327
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.22 E-value=3.8e+02 Score=24.54 Aligned_cols=184 Identities=12% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHH
Q 047146 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270 (608)
Q Consensus 191 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 270 (608)
..+|.-|...|+.++|...++++......|.......-+..=.+....+.+-.++..+...-+. .......+...+.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls---~~~i~~gf~~ll~ 83 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMS---TTDVEKSFDKLLK 83 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q ss_pred hcCChH-------------HHHHHHccCCCCCh-----------------------------------------------
Q 047146 271 KCGNIP-------------SARKVFDEMPVKNV----------------------------------------------- 290 (608)
Q Consensus 271 ~~g~~~-------------~A~~~~~~~~~~~~----------------------------------------------- 290 (608)
...++. -|..+.+....|.-
T Consensus 84 ~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~e 163 (307)
T 2zu6_B 84 DLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVN 163 (307)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHH
T ss_pred hhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHH
Q ss_pred ---hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhc-cCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 047146 291 ---VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN-IGWLELGKWVHTYLDKNHINTDGFIGNAL 366 (608)
Q Consensus 291 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (608)
...+.++.-|...|+.++|...++++......+..+.....+..=.+ ....+....++..+.+.|+-+.......+
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_pred HHHhHhcCCHH
Q 047146 367 VDMYAKCGRID 377 (608)
Q Consensus 367 i~~~~~~g~~~ 377 (608)
...+....++.
T Consensus 244 ~~vl~~l~Dl~ 254 (307)
T 2zu6_B 244 ERIYNEIPDIN 254 (307)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccHhh
No 328
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.14 E-value=2.8e+02 Score=22.62 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh
Q 047146 409 KALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462 (608)
Q Consensus 409 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 462 (608)
.+..+|..|...|+--.. ..|......+...|++.+|.++|..-++ .+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~-~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ-QKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHH
Confidence 366778888887776654 3666666677778888888888888777 4666643
No 329
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.06 E-value=98 Score=22.61 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=29.2
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 047146 374 GRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKAL 411 (608)
Q Consensus 374 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 411 (608)
.+.+.|.++++.++.+....|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887766655443
No 330
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.04 E-value=4.1e+02 Score=24.47 Aligned_cols=89 Identities=11% Similarity=0.087 Sum_probs=57.0
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHH----HhcCChHHHHHHHc
Q 047146 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY----LKCGNIPSARKVFD 283 (608)
Q Consensus 208 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~ 283 (608)
+++..+.+.|+.|...++..++..+.+.=.++.+.++++.+...|... -..+..+++..+ .++.+.++....+.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~--l~~valaiL~~~~~~ll~~~~~~~il~~l~ 286 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEV--IFKVALSLLGSHKPLILQHENLETIVDFIK 286 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTH--HHHHHHHHHHHTHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 466677788899988899999988888778999999999999875332 222222333222 23446777777776
Q ss_pred c-CCCCChhhHHHHHH
Q 047146 284 E-MPVKNVVSWNSMIA 298 (608)
Q Consensus 284 ~-~~~~~~~~~~~li~ 298 (608)
. ++..+......++.
T Consensus 287 ~~~p~~~~~di~~li~ 302 (331)
T 3qye_A 287 STLPNLGLVQMEKTIN 302 (331)
T ss_dssp HTTTCCCHHHHHHHHH
T ss_pred hhCCCCCHHHHHHHHH
Confidence 6 33333333344443
No 331
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.96 E-value=1.1e+02 Score=26.25 Aligned_cols=87 Identities=7% Similarity=-0.095 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHhcccCCCCCCCCcc----------------hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 047146 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV----------------SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221 (608)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----------------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 221 (608)
.+...+..|+.+-+..+++. +..++.. -++.| ...+..|+.+ +++.+.+.|..++
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~ 148 (232)
T 2rfa_A 78 ALHIAVINQNVNLVRALLAR----GASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEE----IVRLLIEHGADIR 148 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHT----TCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHHcCCHHHHHHHHhC----CCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCC
Confidence 34445566777777666665 3333221 22223 3333444443 3333444454443
Q ss_pred HhH--HHHHHHHhhccCCchHHHHHHHHHHHccC
Q 047146 222 GMI--LVIVLSACSKLGDLSLGIKIHRYITDNHF 253 (608)
Q Consensus 222 ~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 253 (608)
... -.+.+...+..|+.+.+..+++.+.+.+.
T Consensus 149 ~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 221 11233444555666666666666666543
No 332
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.78 E-value=1.9e+02 Score=23.03 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=22.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 047146 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440 (608)
Q Consensus 396 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 440 (608)
.++..+...+.+-.|.++++.+.+.+...+..|....+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444444444555556666555544445544444444444443
No 333
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.68 E-value=1.5e+02 Score=29.58 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCH--HHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSMPLV----PDA--FVWG-ALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----p~~--~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
...+|.+++.|...+.++.|..+..+..+. ++. ..|. .+...+.-.+++.+|.+.+..+.+.-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 467888999999999999999999888422 111 2222 234556778899999999988888877664
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.62 E-value=1.9e+02 Score=22.89 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=17.7
Q ss_pred cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCC
Q 047146 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274 (608)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 274 (608)
.+..-.|.++++.+.+.++.+ +..|.-.-++.+.+.|-
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~i--s~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNM--SVATVYNNLRVFRESGL 71 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTC--CHHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHhCCCC--ChhhHHHHHHHHHHCCC
Confidence 334444555555555544333 44333344444555444
No 335
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.25 E-value=72 Score=28.09 Aligned_cols=55 Identities=9% Similarity=-0.173 Sum_probs=29.9
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHhH-------HHHHHHHhh--ccCCchHHHHHHHHHH
Q 047146 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMI-------LVIVLSACS--KLGDLSLGIKIHRYIT 249 (608)
Q Consensus 195 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~ 249 (608)
...++.|+.+....+++.+.+.|..++... .+.+..+.. +.|+.+.+..+++.-.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344556777777667776666555444222 233333332 5577776666666543
No 336
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.22 E-value=2.5e+02 Score=24.24 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC
Q 047146 408 WKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461 (608)
Q Consensus 408 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 461 (608)
+++..+|..|...|+--.. ..|......+...|++++|.++|..-++ .+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR-MKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 4666788888887776554 3666666677777888888888887777 455663
No 337
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.83 E-value=1.1e+02 Score=24.62 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 047146 294 NSMIAGLTHRGQFKEALDIFRRM 316 (608)
Q Consensus 294 ~~li~~~~~~g~~~~A~~~~~~m 316 (608)
+.++.-|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34445555555555555555554
No 338
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=23.36 E-value=2.2e+02 Score=28.28 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=33.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
..-...++.|...+.++..+.|++...|+.|+-+....|+.-+|.-.+-+-
T Consensus 162 ~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 333445567777777777777777777777777777777666655544443
No 339
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=22.82 E-value=2.7e+02 Score=21.86 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=12.8
Q ss_pred HHHHHhcCCHHHHHHHhcc
Q 047146 159 MRLYAVCGLIKAVHKLFHF 177 (608)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~ 177 (608)
+...++.|+.+....+++.
T Consensus 12 l~~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3445566888877777764
No 340
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.76 E-value=1.8e+02 Score=22.74 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=8.2
Q ss_pred HHhcCCHHHHHHHhcc
Q 047146 162 YAVCGLIKAVHKLFHF 177 (608)
Q Consensus 162 ~~~~g~~~~A~~~~~~ 177 (608)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555555555544
No 341
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.67 E-value=1.1e+02 Score=26.66 Aligned_cols=88 Identities=8% Similarity=-0.010 Sum_probs=47.9
Q ss_pred HHHHHcCCCccH-HHHHHHHHHCCCCCCc-------eeHHHHHHHHhc--cCCcHHHHHHHHHHHHhCcCC--------c
Q 047146 90 IQCLSNANPLEA-IALYREMLIKGLLPNT-------YTLPYVLKACWQ--SQSLRVGQQVHAYSMKTALLS--------N 151 (608)
Q Consensus 90 i~~~~~~~~~~~-~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~--------~ 151 (608)
+...++.|+.+. ..+++.+.+.|..++. .-.+.+..++.. .|+.+.++.+++.-...+... +
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 334456777777 6677777777765544 233344444322 277766666665443322100 0
Q ss_pred -HhHHHHHHHHHHhcCCHHHHHHHhcc
Q 047146 152 -VYVFNTLMRLYAVCGLIKAVHKLFHF 177 (608)
Q Consensus 152 -~~~~~~li~~~~~~g~~~~A~~~~~~ 177 (608)
.....+.+...+..|+.+-+..+++.
T Consensus 86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 112 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQCVKLLVEN 112 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 01123344555677888887777776
No 342
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.27 E-value=7.9e+02 Score=26.80 Aligned_cols=128 Identities=9% Similarity=-0.038 Sum_probs=72.5
Q ss_pred HHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHH
Q 047146 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLEL 343 (608)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 343 (608)
.++..+...|..+-|.++....+. +...--.+..+|...|++++|...|++.- .|+..+....... ..
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~----------~~ 882 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL----------RE 882 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG----------HH
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch----------hh
Confidence 367778888999988887777664 44444567788999999999999998763 3333221110000 00
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhh----cCCCCh----hHHHHHHHHHHHcC
Q 047146 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS----MKCRDV----YSYTAMIVGLAIHG 405 (608)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~~ 405 (608)
...++.... .......-|..++..+-+.+.++.+.++-+. +...|. ..|..+..+.+..|
T Consensus 883 ~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 000000000 0011223566777788888887776655443 222333 35666666665443
No 343
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.66 E-value=2.1e+02 Score=26.67 Aligned_cols=81 Identities=10% Similarity=-0.079 Sum_probs=35.2
Q ss_pred HHHhcCCHHHHHHHHHhCC------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 471 LFGRAGLIREALDLIKSMP------LV-PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~------~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
..+..|+.+-+..+++... +. .|..-++. +...+..|+.+-+..+++.-...+..+..-...| ..-.+.|.
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~ 256 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-LHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRAAM 256 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT-THHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTCC
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHhCh
Confidence 3446677776666666431 11 12111222 2233466776655554443222221221111222 22245566
Q ss_pred hHHHHHHHHH
Q 047146 544 WKEALKLRKK 553 (608)
Q Consensus 544 ~~~A~~~~~~ 553 (608)
.+-+.-+++.
T Consensus 257 ~~~v~~Ll~~ 266 (364)
T 3ljn_A 257 VLLTKELLQK 266 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666655554
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.63 E-value=1.7e+02 Score=22.64 Aligned_cols=44 Identities=9% Similarity=-0.056 Sum_probs=21.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC
Q 047146 193 LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236 (608)
Q Consensus 193 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 236 (608)
++..+...+..-.|.++++.+.+.+...+..|..-.|+.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444445555555555555544444444444444444444
No 345
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=21.49 E-value=1.7e+02 Score=30.42 Aligned_cols=62 Identities=18% Similarity=0.045 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 047146 478 IREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542 (608)
Q Consensus 478 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 542 (608)
.+.|.++.+.|+ ...............|++..|.++++.+...+|++..+...++++|.+.|
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 456777777774 23333344555678899999999999999999999877777777776665
No 346
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.31 E-value=2.1e+02 Score=25.18 Aligned_cols=94 Identities=13% Similarity=-0.043 Sum_probs=51.4
Q ss_pred CcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCC-------CceeHHHHHHHHh--ccCCcHHHHHHHHHHHHhC----
Q 047146 82 QVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLP-------NTYTLPYVLKACW--QSQSLRVGQQVHAYSMKTA---- 147 (608)
Q Consensus 82 ~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---- 147 (608)
|..-++.|..+ ++.|+.+. ..+++.....+... |..-.+.+..++. +.|+.+-++.+++.-...+
T Consensus 10 d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 10 RLYDRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp -CCCHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CcccchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 33445555444 45777777 66777666665433 3344555555553 3577777777666543211
Q ss_pred -----cC-CcHhHHHHHHHHHHhcCCHHHHHHHhcc
Q 047146 148 -----LL-SNVYVFNTLMRLYAVCGLIKAVHKLFHF 177 (608)
Q Consensus 148 -----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 177 (608)
.. .|.. ..+-+...+..|+.+-+..+++.
T Consensus 89 ~i~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 89 FVNASYTDSYYK-GQTALHIAIERRNMTLVTLLVEN 123 (273)
T ss_dssp HHTCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HhhcccccccCC-CCCHHHHHHHcCCHHHHHHHHHC
Confidence 00 1112 22334445567888877777776
No 347
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.72 E-value=1.6e+02 Score=23.93 Aligned_cols=13 Identities=0% Similarity=0.020 Sum_probs=5.3
Q ss_pred cHHHHHHHHHHhH
Q 047146 441 LVEEGCKHFLDMS 453 (608)
Q Consensus 441 ~~~~a~~~~~~~~ 453 (608)
..-.|.++++.+.
T Consensus 47 ~h~sA~eI~~~l~ 59 (162)
T 4ets_A 47 THYTPESLYMEIK 59 (162)
T ss_dssp SCBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 3333444444443
No 348
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.48 E-value=82 Score=24.87 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=8.2
Q ss_pred HhcCCHHHHHHHhcc
Q 047146 163 AVCGLIKAVHKLFHF 177 (608)
Q Consensus 163 ~~~g~~~~A~~~~~~ 177 (608)
+..|+.+-+..+++.
T Consensus 43 ~~~~~~~~v~~Ll~~ 57 (156)
T 1bd8_A 43 MMFGSTAIALELLKQ 57 (156)
T ss_dssp SCTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 555665555555544
No 349
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.27 E-value=5.4e+02 Score=24.15 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=13.7
Q ss_pred HHHHHHHhhccCCchHHHHHHHHH
Q 047146 225 LVIVLSACSKLGDLSLGIKIHRYI 248 (608)
Q Consensus 225 ~~~ll~~~~~~~~~~~a~~~~~~~ 248 (608)
...++.-|...++.+++...++.+
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL 80 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDL 80 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHh
Confidence 345555566666666666555553
Done!