BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047148
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
+MT +P +T + DA I+ + K+ LPV+D DG + + + AA+ +
Sbjct: 90 LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI 144
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
+MT +P +T + DA I+ + K+ LPV+D DG + + + AA+ +
Sbjct: 104 LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI 158
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 4 TSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYC 63
T SP T + DA ++ + KF LPV+D DG + L + AA+ +
Sbjct: 105 TPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNADSI 164
Query: 64 NER 66
+ R
Sbjct: 165 SGR 167
>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein
(Tm0935) From Thermotoga Maritima At 1.87 A Resolution
Length = 157
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 12 METTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52
M+T + +AL +M D +PV+D+ G + L+ L+I A
Sbjct: 110 MDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLA 150
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 12 METTILDALHIMHDGKFLHLPVIDKDG---GVAACLDVLQITHAAI 54
M T ++D + ++ G+ +P+ID++G V DVL + I
Sbjct: 26 MTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI 71
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 12 METTILDALHIMHDGKFLHLPVIDKDG---GVAACLDVLQITHAAI 54
M T ++D + ++ G+ +P+ID++G V DVL + I
Sbjct: 205 MTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI 250
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 12 METTILDALHIMHDGKFLHLPVIDKDG---GVAACLDVLQITHAAI 54
M T ++D + ++ G+ +P+ID++G V DVL + I
Sbjct: 198 MTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI 243
>pdb|3KXR|A Chain A, Structure Of The Cystathionine Beta-Synthase Pair Domain
Of The Putative Mg2+ Transporter So5017 From Shewanella
Oneidensis Mr-1
Length = 205
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWH 61
+++ T TT+LDA + + + LPVID G + + ++T A + H
Sbjct: 121 LLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGEL-----IGRVTLRAATALVREH 175
Query: 62 Y 62
Y
Sbjct: 176 Y 176
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQI 49
+MT +P T+ T AL + K PV++K+G + + V +I
Sbjct: 6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI 53
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 13 ETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52
++ I AL + HLPV+D G + + + IT A
Sbjct: 83 DSPITGALALXRQFNIRHLPVVDDKGNLKGIISIRDITRA 122
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein
Ta0289 Of Unknown Function From Thermoplasma
Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein
Ta0289 Of Unknown Function From Thermoplasma
Acidophilum
Length = 184
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI 54
+M S+ + TT+ DA+ IM++ L V D +G L I I
Sbjct: 14 IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI 66
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In
Its Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In
Its Fe+2-Bound State
Length = 198
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI 54
+M S+ + TT+ DA+ IM++ L V D +G L I I
Sbjct: 28 IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI 80
>pdb|1GZ7|A Chain A, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|B Chain B, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|C Chain C, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|D Chain D, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
Length = 534
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 18 DALHIMHDGKFLHLPVI---DKDGGVAACLDVLQITHAAISMCY 58
D ++ DGK+ H+PVI D G L L +T A + Y
Sbjct: 318 DMYALVRDGKYAHVPVIIGDQNDEGTLFGLSSLNVTTDAQARAY 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.140 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,482,275
Number of Sequences: 62578
Number of extensions: 85637
Number of successful extensions: 257
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 20
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)