BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047148
(84 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana
GN=CBSCBSPB3 PE=1 SV=1
Length = 556
Score = 106 bits (264), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/55 (83%), Positives = 51/55 (92%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
VMT +PECA++ETTILDALH MHDGKFLHLP+IDKDG AAC+DVLQITHAAISM
Sbjct: 301 VMTPNPECASLETTILDALHTMHDGKFLHLPIIDKDGSAAACVDVLQITHAAISM 355
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
VMT +P T ++ L+AL M GKF HLPV++ +G V A LD+ + + AIS
Sbjct: 133 VMTRNPIFVTSDSLALEALQKMVQGKFRHLPVVE-NGEVIALLDITKCLYDAIS 185
>sp|Q9SJQ5|Y2650_ARATH CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana
GN=CBSCBSPB2 PE=2 SV=1
Length = 536
Score = 102 bits (255), Expect = 5e-22, Method: Composition-based stats.
Identities = 46/54 (85%), Positives = 49/54 (90%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
VMT +PECA++ETTILDALHIMHDGKFLHLPV DKDG ACLDVLQITHAAIS
Sbjct: 294 VMTPNPECASIETTILDALHIMHDGKFLHLPVFDKDGFAVACLDVLQITHAAIS 347
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
VMT +P T ++ ++AL M GKF HLPV++ +G V A LD+ + + AIS
Sbjct: 131 VMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIALLDITKCLYDAIS 183
>sp|P0DH79|Y5064_ARATH CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana
GN=CBSCBSPB5 PE=2 SV=1
Length = 548
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 46/54 (85%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
VMT +PE AT++ I++ALHIMH+GKFLHLPV+DKDG V A +DV+ ITHAA++
Sbjct: 300 VMTPNPESATVDMAIVEALHIMHNGKFLHLPVLDKDGDVVAVIDVIHITHAAVT 353
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
VMT +P +T ++AL M GKF HLPV++ +G V A LD+ + + AI+
Sbjct: 132 VMTKNPVFVLSDTIAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIA 184
>sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4 OS=Arabidopsis thaliana
GN=CBSCBSPB4 PE=2 SV=2
Length = 548
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 46/54 (85%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
VMT +PE AT++ I++ALHIMH+GKFLHLPV+DKDG V A +DV+ ITHAA++
Sbjct: 300 VMTPNPESATVDMAIVEALHIMHNGKFLHLPVLDKDGDVVAVIDVIHITHAAVT 353
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
VMT +P +T ++AL M GKF HLPV++ +G V A LD+ + + AI+
Sbjct: 132 VMTKNPVFVLSDTIAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIA 184
>sp|Q9FMV3|Y5349_ARATH CBS domain-containing protein CBSCBSPB1 OS=Arabidopsis thaliana
GN=CBSCBSPB1 PE=1 SV=1
Length = 543
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38
VMT +PE ++T I++ALHIMH+GKFLHLPV DK+G
Sbjct: 292 VMTQNPESTIVDTPIVEALHIMHEGKFLHLPVTDKEG 328
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55
VMT +P ET ++AL M GKF HLPV++ +G V A LD+ + + AI+
Sbjct: 124 VMTKNPMFVLSETLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIA 176
>sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug70 PE=1 SV=1
Length = 730
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGG 39
+M++SP C T +T DAL +M + KF HLPV+ DGG
Sbjct: 134 IMSTSPLCITSDTRFDDALLLMIEHKFRHLPVV-SDGG 170
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52
VMT P+CA + AL M +GKF +LPV+D+ + L + + A
Sbjct: 327 VMTPHPDCALASLRVSTALERMIEGKFSNLPVVDESDAIIGMLSLFHLATA 377
>sp|Q9C5D0|CBSX2_ARATH CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis
thaliana GN=CBSX2 PE=1 SV=1
Length = 238
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYE 59
+MT SP T + DA ++ + KF LPV+D DG + L + AA+ + E
Sbjct: 176 LMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRE 233
>sp|O23193|CBSX1_ARATH CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis
thaliana GN=CBSX1 PE=1 SV=2
Length = 236
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56
+MT +P +T + DA I+ + K+ LPV+D DG + + + AA+ +
Sbjct: 174 LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI 228
>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus
ambivalens PE=4 SV=1
Length = 164
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52
MT + T +T + DAL IM + F HLP+I +G + + + + A
Sbjct: 72 MTKDVKGVTEDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSIRDLARA 121
>sp|B3E6P2|MUTS_GEOLS DNA mismatch repair protein MutS OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=mutS PE=3 SV=1
Length = 872
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 10 ATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYCNERDLT 69
+T +++ HI+ L V+D+ G + D L I A ++ ++C R L
Sbjct: 677 STFMVEMMETAHILRSATTKSLVVLDEIGRGTSTFDGLSIAWAVAEYLHDTNHCKARTLF 736
Query: 70 CCFYH 74
YH
Sbjct: 737 ATHYH 741
>sp|Q58799|Y1404_METJA Uncharacterized protein MJ1404 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ1404 PE=4 SV=1
Length = 421
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGG 39
+MT T +T + AL IM + F HL V+DK G
Sbjct: 12 IMTKDVVTVTPDTPVSKALGIMEENGFHHLIVVDKKDG 49
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.140 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,315,869
Number of Sequences: 539616
Number of extensions: 1086264
Number of successful extensions: 2562
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2543
Number of HSP's gapped (non-prelim): 20
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)