Query 047148
Match_columns 84
No_of_seqs 106 out of 1772
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00571 CBS: CBS domain CBS d 99.4 3E-12 6.5E-17 67.6 5.9 53 1-53 3-55 (57)
2 cd04603 CBS_pair_KefB_assoc Th 98.9 3.1E-09 6.8E-14 62.3 5.9 51 1-51 60-110 (111)
3 cd04627 CBS_pair_14 The CBS do 98.9 1.2E-08 2.6E-13 60.6 6.8 49 2-50 73-121 (123)
4 cd04619 CBS_pair_6 The CBS dom 98.9 7.8E-09 1.7E-13 60.8 5.6 49 2-50 64-112 (114)
5 cd04597 CBS_pair_DRTGG_assoc2 98.8 1.3E-08 2.9E-13 60.4 6.1 51 1-51 62-112 (113)
6 cd04641 CBS_pair_28 The CBS do 98.8 3.4E-08 7.3E-13 58.4 6.9 49 3-51 71-119 (120)
7 cd04600 CBS_pair_HPP_assoc Thi 98.8 2.3E-08 5E-13 59.1 5.4 50 2-51 74-123 (124)
8 cd04618 CBS_pair_5 The CBS dom 98.7 2.8E-08 6E-13 57.7 5.3 45 7-51 52-97 (98)
9 COG3620 Predicted transcriptio 98.7 1.9E-08 4.2E-13 64.1 4.5 68 1-69 69-136 (187)
10 cd04607 CBS_pair_NTP_transfera 98.7 5.4E-08 1.2E-12 56.8 6.0 50 2-51 63-112 (113)
11 COG3448 CBS-domain-containing 98.7 1.7E-08 3.6E-13 69.9 4.3 53 1-53 249-301 (382)
12 COG2524 Predicted transcriptio 98.7 3.9E-08 8.5E-13 66.8 6.0 54 1-54 238-291 (294)
13 cd04596 CBS_pair_DRTGG_assoc T 98.7 5.3E-08 1.2E-12 56.5 5.8 50 2-51 58-107 (108)
14 cd04610 CBS_pair_ParBc_assoc T 98.7 6E-08 1.3E-12 55.8 5.6 50 2-51 57-106 (107)
15 cd04642 CBS_pair_29 The CBS do 98.7 1.1E-07 2.3E-12 56.8 6.7 49 3-51 77-125 (126)
16 cd04617 CBS_pair_4 The CBS dom 98.7 5.5E-08 1.2E-12 57.4 5.0 49 2-50 63-116 (118)
17 cd04620 CBS_pair_7 The CBS dom 98.7 9.4E-08 2E-12 55.8 5.9 50 2-51 63-114 (115)
18 PRK14869 putative manganese-de 98.7 1.1E-07 2.3E-12 69.9 7.4 57 1-57 72-128 (546)
19 cd04587 CBS_pair_CAP-ED_DUF294 98.7 6.1E-08 1.3E-12 56.3 5.0 50 2-51 63-112 (113)
20 cd04630 CBS_pair_17 The CBS do 98.6 8.1E-08 1.7E-12 56.2 5.3 49 2-51 65-113 (114)
21 cd04582 CBS_pair_ABC_OpuCA_ass 98.6 1.6E-07 3.4E-12 54.0 6.4 50 2-51 56-105 (106)
22 cd04602 CBS_pair_IMPDH_2 This 98.6 1.2E-07 2.6E-12 55.5 6.0 50 2-51 62-113 (114)
23 cd04641 CBS_pair_28 The CBS do 98.6 2.3E-07 5E-12 54.8 7.1 48 6-53 2-49 (120)
24 cd04615 CBS_pair_2 The CBS dom 98.6 1.2E-07 2.6E-12 55.1 5.8 50 2-51 63-112 (113)
25 cd04606 CBS_pair_Mg_transporte 98.6 1.6E-07 3.5E-12 54.5 6.3 51 2-52 58-108 (109)
26 cd04604 CBS_pair_KpsF_GutQ_ass 98.6 1.5E-07 3.2E-12 54.7 5.9 50 2-51 64-113 (114)
27 cd04583 CBS_pair_ABC_OpuCA_ass 98.6 1.5E-07 3.2E-12 54.2 5.8 50 2-51 59-108 (109)
28 cd04585 CBS_pair_ACT_assoc2 Th 98.6 1.8E-07 3.8E-12 54.7 6.2 50 2-51 72-121 (122)
29 PRK11543 gutQ D-arabinose 5-ph 98.6 1.3E-07 2.9E-12 65.0 6.4 52 1-52 267-318 (321)
30 cd04593 CBS_pair_EriC_assoc_ba 98.6 1.4E-07 3E-12 55.2 5.6 50 2-51 63-114 (115)
31 cd04605 CBS_pair_MET2_assoc Th 98.6 2.1E-07 4.5E-12 53.9 6.2 50 2-51 60-109 (110)
32 COG3448 CBS-domain-containing 98.6 2.2E-07 4.8E-12 64.5 7.2 59 1-59 319-377 (382)
33 cd04618 CBS_pair_5 The CBS dom 98.6 2.2E-07 4.9E-12 53.8 6.3 47 6-52 2-49 (98)
34 cd04639 CBS_pair_26 The CBS do 98.6 1.6E-07 3.5E-12 54.4 5.7 49 2-50 61-109 (111)
35 cd04614 CBS_pair_1 The CBS dom 98.6 2.7E-07 5.9E-12 53.1 6.5 47 6-52 2-48 (96)
36 cd04605 CBS_pair_MET2_assoc Th 98.6 4.5E-07 9.8E-12 52.4 7.5 49 4-52 1-49 (110)
37 cd04625 CBS_pair_12 The CBS do 98.6 1.9E-07 4.1E-12 54.2 5.8 49 2-51 63-111 (112)
38 cd04592 CBS_pair_EriC_assoc_eu 98.6 4.1E-07 8.9E-12 55.7 7.5 50 5-54 1-50 (133)
39 cd04635 CBS_pair_22 The CBS do 98.6 1.5E-07 3.2E-12 55.4 5.3 50 2-51 72-121 (122)
40 cd04614 CBS_pair_1 The CBS dom 98.6 1.9E-07 4.2E-12 53.7 5.6 45 7-51 51-95 (96)
41 cd04631 CBS_pair_18 The CBS do 98.6 2E-07 4.4E-12 55.0 5.8 50 2-51 75-124 (125)
42 cd04611 CBS_pair_PAS_GGDEF_DUF 98.6 2.4E-07 5.1E-12 53.5 6.0 50 2-51 61-110 (111)
43 smart00116 CBS Domain in cysta 98.6 4.2E-07 9.1E-12 44.6 6.1 45 7-51 2-46 (49)
44 cd04612 CBS_pair_SpoIVFB_EriC_ 98.6 3E-07 6.5E-12 53.1 6.3 50 2-51 61-110 (111)
45 cd04599 CBS_pair_GGDEF_assoc2 98.6 2.5E-07 5.4E-12 53.0 5.8 48 2-50 56-103 (105)
46 cd04595 CBS_pair_DHH_polyA_Pol 98.6 2.4E-07 5.2E-12 53.7 5.7 49 2-51 61-109 (110)
47 TIGR00400 mgtE Mg2+ transporte 98.6 2.6E-07 5.7E-12 66.7 7.1 56 1-56 199-254 (449)
48 cd04601 CBS_pair_IMPDH This cd 98.6 2.7E-07 5.8E-12 53.2 5.8 50 2-51 59-109 (110)
49 COG2524 Predicted transcriptio 98.6 2E-07 4.4E-12 63.4 5.9 54 1-55 176-229 (294)
50 cd04640 CBS_pair_27 The CBS do 98.6 1.4E-07 3E-12 56.4 4.6 40 12-51 85-125 (126)
51 PRK10892 D-arabinose 5-phospha 98.6 2.2E-07 4.7E-12 64.2 6.2 51 1-52 273-323 (326)
52 PRK07807 inosine 5-monophospha 98.6 2.5E-07 5.4E-12 67.5 6.8 56 1-56 152-207 (479)
53 cd04801 CBS_pair_M50_like This 98.6 1.7E-07 3.6E-12 54.8 4.8 44 7-50 69-112 (114)
54 cd04590 CBS_pair_CorC_HlyC_ass 98.5 3E-07 6.5E-12 53.2 5.8 47 5-51 64-110 (111)
55 cd04622 CBS_pair_9 The CBS dom 98.5 3.1E-07 6.6E-12 53.3 5.8 50 2-51 63-112 (113)
56 PRK07107 inosine 5-monophospha 98.5 2.3E-07 4.9E-12 68.1 6.2 53 1-53 165-219 (502)
57 cd04803 CBS_pair_15 The CBS do 98.5 3.8E-07 8.2E-12 53.7 6.0 50 2-51 72-121 (122)
58 TIGR01303 IMP_DH_rel_1 IMP deh 98.5 3.1E-07 6.8E-12 67.0 6.7 56 1-56 150-205 (475)
59 cd04591 CBS_pair_EriC_assoc_eu 98.5 4E-07 8.7E-12 53.1 6.0 49 2-51 56-104 (105)
60 cd04608 CBS_pair_PALP_assoc Th 98.5 9.1E-07 2E-11 53.1 7.7 49 5-53 2-50 (124)
61 cd04629 CBS_pair_16 The CBS do 98.5 2.5E-07 5.4E-12 53.7 5.1 49 2-51 65-113 (114)
62 cd04588 CBS_pair_CAP-ED_DUF294 98.5 4.1E-07 8.8E-12 52.6 5.9 50 2-51 60-109 (110)
63 cd04623 CBS_pair_10 The CBS do 98.5 4.3E-07 9.4E-12 52.5 6.0 49 2-51 64-112 (113)
64 cd04637 CBS_pair_24 The CBS do 98.5 4.8E-07 1E-11 53.3 6.2 50 2-51 72-121 (122)
65 cd04626 CBS_pair_13 The CBS do 98.5 3.7E-07 8E-12 53.0 5.6 49 2-51 62-110 (111)
66 cd04613 CBS_pair_SpoIVFB_EriC_ 98.5 4.4E-07 9.5E-12 52.5 5.8 50 2-51 63-113 (114)
67 cd04800 CBS_pair_CAP-ED_DUF294 98.5 3.8E-07 8.2E-12 52.8 5.5 49 2-51 62-110 (111)
68 cd04623 CBS_pair_10 The CBS do 98.5 7.7E-07 1.7E-11 51.4 6.7 48 6-53 2-49 (113)
69 cd04621 CBS_pair_8 The CBS dom 98.5 5.2E-07 1.1E-11 54.9 6.2 49 2-51 86-134 (135)
70 cd04586 CBS_pair_BON_assoc Thi 98.5 2.7E-07 5.9E-12 55.6 4.9 49 2-51 86-134 (135)
71 COG0517 FOG: CBS domain [Gener 98.5 4.9E-07 1.1E-11 52.6 5.8 48 2-49 67-116 (117)
72 cd04594 CBS_pair_EriC_assoc_ar 98.5 5.5E-07 1.2E-11 52.0 5.9 49 2-51 55-103 (104)
73 PRK14869 putative manganese-de 98.5 3.2E-07 6.8E-12 67.4 6.0 53 1-53 250-303 (546)
74 cd04624 CBS_pair_11 The CBS do 98.5 6.3E-07 1.4E-11 52.0 6.0 50 2-51 62-111 (112)
75 cd04633 CBS_pair_20 The CBS do 98.5 5E-07 1.1E-11 53.1 5.2 49 2-51 72-120 (121)
76 cd04582 CBS_pair_ABC_OpuCA_ass 98.5 1.3E-06 2.8E-11 50.1 6.9 49 5-53 1-49 (106)
77 cd04636 CBS_pair_23 The CBS do 98.5 7.6E-07 1.7E-11 53.4 6.0 49 2-51 83-131 (132)
78 COG4109 Predicted transcriptio 98.4 6.9E-07 1.5E-11 63.2 6.5 53 2-54 254-306 (432)
79 cd04619 CBS_pair_6 The CBS dom 98.4 1.1E-06 2.5E-11 51.4 6.4 47 7-53 3-49 (114)
80 cd04802 CBS_pair_3 The CBS dom 98.4 8.2E-07 1.8E-11 51.5 5.7 49 2-51 63-111 (112)
81 cd04643 CBS_pair_30 The CBS do 98.4 5.2E-07 1.1E-11 52.5 4.9 48 2-51 68-115 (116)
82 cd04617 CBS_pair_4 The CBS dom 98.4 2E-06 4.3E-11 50.7 7.4 49 6-54 2-50 (118)
83 PRK10892 D-arabinose 5-phospha 98.4 6.5E-07 1.4E-11 61.9 5.9 52 1-52 206-259 (326)
84 cd04630 CBS_pair_17 The CBS do 98.4 1.6E-06 3.5E-11 50.6 6.7 48 5-52 1-49 (114)
85 cd04589 CBS_pair_CAP-ED_DUF294 98.4 8.8E-07 1.9E-11 51.3 5.5 49 2-51 62-110 (111)
86 cd04600 CBS_pair_HPP_assoc Thi 98.4 1.8E-06 3.9E-11 50.8 7.0 49 4-52 1-49 (124)
87 cd04593 CBS_pair_EriC_assoc_ba 98.4 2.2E-06 4.7E-11 50.0 7.2 49 5-53 1-49 (115)
88 cd04643 CBS_pair_30 The CBS do 98.4 2.1E-06 4.6E-11 49.9 7.0 48 6-53 2-49 (116)
89 PRK11543 gutQ D-arabinose 5-ph 98.4 9.4E-07 2E-11 60.8 5.9 51 1-51 201-253 (321)
90 cd04640 CBS_pair_27 The CBS do 98.4 2.1E-06 4.5E-11 51.2 6.7 46 6-51 2-47 (126)
91 cd04624 CBS_pair_11 The CBS do 98.4 2.7E-06 5.9E-11 49.2 7.1 48 5-52 1-48 (112)
92 cd04632 CBS_pair_19 The CBS do 98.4 2.6E-06 5.7E-11 50.6 7.1 47 6-52 2-48 (128)
93 cd04613 CBS_pair_SpoIVFB_EriC_ 98.4 2.4E-06 5.1E-11 49.4 6.8 49 5-53 1-49 (114)
94 cd04632 CBS_pair_19 The CBS do 98.4 1.2E-06 2.7E-11 52.1 5.6 50 2-51 76-127 (128)
95 cd04801 CBS_pair_M50_like This 98.4 2.4E-06 5.1E-11 49.8 6.7 48 6-53 2-50 (114)
96 PRK01862 putative voltage-gate 98.4 1.4E-06 3.1E-11 64.5 6.9 54 1-54 516-571 (574)
97 cd04642 CBS_pair_29 The CBS do 98.4 1.7E-06 3.6E-11 51.5 6.1 48 6-53 2-49 (126)
98 cd04603 CBS_pair_KefB_assoc Th 98.4 2.3E-06 5E-11 50.0 6.6 47 6-52 2-48 (111)
99 PLN02274 inosine-5'-monophosph 98.4 1.4E-06 3E-11 64.1 6.6 54 2-55 168-223 (505)
100 cd04586 CBS_pair_BON_assoc Thi 98.4 2.3E-06 4.9E-11 51.5 6.5 48 5-52 2-49 (135)
101 COG2905 Predicted signal-trans 98.4 1.8E-06 3.9E-11 63.9 7.0 79 1-80 218-301 (610)
102 cd04584 CBS_pair_ACT_assoc Thi 98.4 1.3E-06 2.9E-11 51.1 5.3 49 2-51 72-120 (121)
103 cd02205 CBS_pair The CBS domai 98.3 1.9E-06 4.2E-11 48.9 5.7 50 2-51 63-112 (113)
104 cd04627 CBS_pair_14 The CBS do 98.3 4.1E-06 9E-11 49.5 7.3 48 6-53 2-50 (123)
105 cd04626 CBS_pair_13 The CBS do 98.3 3.9E-06 8.4E-11 48.6 6.8 48 6-53 2-49 (111)
106 cd04583 CBS_pair_ABC_OpuCA_ass 98.3 5E-06 1.1E-10 47.7 7.1 48 5-52 2-49 (109)
107 cd04612 CBS_pair_SpoIVFB_EriC_ 98.3 3.8E-06 8.2E-11 48.4 6.6 49 5-54 1-49 (111)
108 cd04629 CBS_pair_16 The CBS do 98.3 3.4E-06 7.4E-11 48.9 6.4 48 5-52 1-48 (114)
109 cd04608 CBS_pair_PALP_assoc Th 98.3 5.5E-07 1.2E-11 54.0 3.1 51 1-51 63-122 (124)
110 TIGR01137 cysta_beta cystathio 98.3 2.4E-06 5.2E-11 61.4 6.8 52 1-52 339-390 (454)
111 cd04590 CBS_pair_CorC_HlyC_ass 98.3 4.7E-06 1E-10 48.1 7.0 49 6-54 2-51 (111)
112 cd04635 CBS_pair_22 The CBS do 98.3 2.7E-06 5.9E-11 49.9 6.0 48 5-52 1-48 (122)
113 cd04631 CBS_pair_18 The CBS do 98.3 3.5E-06 7.6E-11 49.7 6.5 48 6-53 2-50 (125)
114 cd04639 CBS_pair_26 The CBS do 98.3 3.6E-06 7.7E-11 48.7 6.4 47 6-52 2-48 (111)
115 cd04803 CBS_pair_15 The CBS do 98.3 3.8E-06 8.2E-11 49.3 6.5 48 6-53 2-49 (122)
116 cd04638 CBS_pair_25 The CBS do 98.3 2.7E-06 5.9E-11 49.0 5.6 49 2-51 57-105 (106)
117 cd04621 CBS_pair_8 The CBS dom 98.3 4.4E-06 9.5E-11 50.8 6.6 48 6-53 2-49 (135)
118 cd04588 CBS_pair_CAP-ED_DUF294 98.3 6.8E-06 1.5E-10 47.4 7.1 48 5-53 1-48 (110)
119 cd04596 CBS_pair_DRTGG_assoc T 98.3 4.4E-06 9.6E-11 48.3 6.3 47 5-51 2-48 (108)
120 cd04615 CBS_pair_2 The CBS dom 98.3 5.8E-06 1.3E-10 47.9 6.8 47 6-52 2-48 (113)
121 cd04636 CBS_pair_23 The CBS do 98.3 3.8E-06 8.2E-11 50.4 6.1 48 6-53 2-49 (132)
122 TIGR00393 kpsF KpsF/GutQ famil 98.3 2.2E-06 4.9E-11 57.4 5.6 52 1-52 159-211 (268)
123 PRK07807 inosine 5-monophospha 98.3 3.1E-06 6.8E-11 61.9 6.7 50 1-50 93-142 (479)
124 TIGR00393 kpsF KpsF/GutQ famil 98.3 2.1E-06 4.5E-11 57.6 5.4 45 1-45 224-268 (268)
125 PRK01862 putative voltage-gate 98.3 2.8E-06 6E-11 62.9 6.2 52 1-52 451-502 (574)
126 cd04598 CBS_pair_GGDEF_assoc T 98.2 3.7E-06 8E-11 49.2 5.5 50 2-51 66-118 (119)
127 cd02205 CBS_pair The CBS domai 98.2 1.1E-05 2.4E-10 45.7 7.4 50 6-55 2-51 (113)
128 PTZ00314 inosine-5'-monophosph 98.2 2.4E-06 5.3E-11 62.6 5.5 53 1-53 163-217 (495)
129 TIGR01302 IMP_dehydrog inosine 98.2 3.1E-06 6.8E-11 61.3 6.0 52 2-53 148-200 (450)
130 cd04584 CBS_pair_ACT_assoc Thi 98.2 6.5E-06 1.4E-10 48.2 6.3 47 6-52 2-48 (121)
131 cd04585 CBS_pair_ACT_assoc2 Th 98.2 8.2E-06 1.8E-10 47.5 6.6 47 6-53 2-48 (122)
132 cd04637 CBS_pair_24 The CBS do 98.2 9.7E-06 2.1E-10 47.6 7.0 46 6-52 2-47 (122)
133 PRK15094 magnesium/cobalt effl 98.2 5E-06 1.1E-10 57.3 6.1 53 5-57 140-192 (292)
134 PRK05567 inosine 5'-monophosph 98.2 6.5E-06 1.4E-10 60.2 6.9 51 1-51 91-141 (486)
135 cd04800 CBS_pair_CAP-ED_DUF294 98.2 1.1E-05 2.4E-10 46.5 6.7 47 5-52 1-47 (111)
136 cd04609 CBS_pair_PALP_assoc2 T 98.2 1E-05 2.2E-10 46.4 6.4 47 6-53 2-48 (110)
137 cd04607 CBS_pair_NTP_transfera 98.2 1.1E-05 2.4E-10 46.9 6.6 47 6-52 3-49 (113)
138 cd04634 CBS_pair_21 The CBS do 98.2 7.4E-06 1.6E-10 50.0 6.0 48 2-50 94-141 (143)
139 cd04595 CBS_pair_DHH_polyA_Pol 98.2 1.5E-05 3.2E-10 46.0 7.0 48 5-53 2-49 (110)
140 cd04622 CBS_pair_9 The CBS dom 98.2 1.2E-05 2.5E-10 46.5 6.5 45 5-50 1-45 (113)
141 cd04589 CBS_pair_CAP-ED_DUF294 98.2 1.7E-05 3.6E-10 45.9 7.1 47 6-53 2-48 (111)
142 COG2239 MgtE Mg/Co/Ni transpor 98.2 6.1E-06 1.3E-10 60.0 6.2 56 1-56 200-255 (451)
143 cd04609 CBS_pair_PALP_assoc2 T 98.2 5.9E-06 1.3E-10 47.4 5.1 48 2-51 62-109 (110)
144 PRK15094 magnesium/cobalt effl 98.2 8.2E-06 1.8E-10 56.2 6.5 52 1-52 71-125 (292)
145 cd04634 CBS_pair_21 The CBS do 98.2 1E-05 2.2E-10 49.4 6.3 48 5-53 1-48 (143)
146 PRK05567 inosine 5'-monophosph 98.2 7.1E-06 1.5E-10 59.9 6.4 52 2-53 152-204 (486)
147 cd04611 CBS_pair_PAS_GGDEF_DUF 98.1 1.9E-05 4.2E-10 45.4 6.9 47 6-53 2-48 (111)
148 cd04633 CBS_pair_20 The CBS do 98.1 1.8E-05 4E-10 46.3 6.8 47 6-53 2-48 (121)
149 cd04601 CBS_pair_IMPDH This cd 98.1 1.3E-05 2.8E-10 46.0 6.0 46 5-50 2-47 (110)
150 cd04602 CBS_pair_IMPDH_2 This 98.1 1.3E-05 2.9E-10 46.7 6.1 47 5-51 2-51 (114)
151 cd04599 CBS_pair_GGDEF_assoc2 98.1 1.6E-05 3.6E-10 45.3 6.3 45 6-51 2-46 (105)
152 cd04587 CBS_pair_CAP-ED_DUF294 98.1 2.8E-05 6E-10 44.9 7.2 46 6-52 2-47 (113)
153 TIGR01302 IMP_dehydrog inosine 98.1 1.3E-05 2.9E-10 58.1 6.8 51 1-51 84-137 (450)
154 cd04598 CBS_pair_GGDEF_assoc T 98.1 2E-05 4.3E-10 46.0 6.4 46 6-52 2-48 (119)
155 TIGR03520 GldE gliding motilit 98.1 1.5E-05 3.3E-10 57.1 6.8 52 1-52 195-249 (408)
156 cd04604 CBS_pair_KpsF_GutQ_ass 98.1 2.6E-05 5.6E-10 45.0 6.3 48 6-53 3-50 (114)
157 cd04594 CBS_pair_EriC_assoc_ar 98.0 2.9E-05 6.3E-10 44.6 6.3 44 8-52 4-47 (104)
158 cd04802 CBS_pair_3 The CBS dom 98.0 4.6E-05 1E-09 44.0 6.8 46 6-52 2-47 (112)
159 cd04610 CBS_pair_ParBc_assoc T 98.0 4E-05 8.7E-10 43.8 6.4 46 5-51 2-47 (107)
160 cd04638 CBS_pair_25 The CBS do 98.0 5.1E-05 1.1E-09 43.5 6.8 47 6-52 2-48 (106)
161 TIGR03520 GldE gliding motilit 98.0 2.7E-05 5.7E-10 55.9 6.6 52 5-56 262-313 (408)
162 cd04606 CBS_pair_Mg_transporte 98.0 2.3E-05 4.9E-10 45.3 5.1 42 10-51 2-48 (109)
163 PLN02274 inosine-5'-monophosph 98.0 3E-05 6.6E-10 57.1 6.8 49 3-51 106-157 (505)
164 PTZ00314 inosine-5'-monophosph 98.0 3.4E-05 7.4E-10 56.7 6.7 50 2-51 101-153 (495)
165 cd04625 CBS_pair_12 The CBS do 98.0 6.9E-05 1.5E-09 43.2 6.9 47 6-53 2-48 (112)
166 COG0517 FOG: CBS domain [Gener 97.9 0.00011 2.4E-09 42.5 7.3 54 2-56 4-57 (117)
167 cd04591 CBS_pair_EriC_assoc_eu 97.9 6.5E-05 1.4E-09 43.6 6.2 48 7-54 4-54 (105)
168 cd04620 CBS_pair_7 The CBS dom 97.9 9.4E-05 2E-09 42.9 6.5 46 6-52 2-48 (115)
169 TIGR00400 mgtE Mg2+ transporte 97.8 5.9E-05 1.3E-09 54.7 6.2 51 1-51 135-190 (449)
170 TIGR01186 proV glycine betaine 97.8 9.9E-05 2.1E-09 52.4 6.9 50 3-53 308-357 (363)
171 TIGR01303 IMP_DH_rel_1 IMP deh 97.8 8.5E-05 1.8E-09 54.4 6.3 49 1-50 92-140 (475)
172 KOG1764 5'-AMP-activated prote 97.7 0.00015 3.3E-09 51.8 6.8 53 6-58 311-363 (381)
173 PRK07107 inosine 5-monophospha 97.7 0.00011 2.4E-09 54.1 5.8 46 6-51 106-154 (502)
174 COG2905 Predicted signal-trans 97.7 0.0001 2.2E-09 54.9 5.2 54 2-55 154-207 (610)
175 cd04592 CBS_pair_EriC_assoc_eu 97.6 0.00011 2.4E-09 44.9 4.2 36 3-38 84-119 (133)
176 PRK11573 hypothetical protein; 97.6 0.0003 6.5E-09 50.7 6.6 53 5-57 262-314 (413)
177 KOG2550 IMP dehydrogenase/GMP 97.6 9E-05 2E-09 53.5 3.6 53 1-53 175-227 (503)
178 PRK11573 hypothetical protein; 97.5 0.0006 1.3E-08 49.1 7.0 52 1-52 191-245 (413)
179 TIGR01137 cysta_beta cystathio 97.5 0.00033 7.1E-09 50.4 5.7 48 2-52 405-452 (454)
180 COG1253 TlyC Hemolysins and re 97.5 0.00054 1.2E-08 49.4 6.5 53 6-58 280-332 (429)
181 PRK10070 glycine betaine trans 97.4 0.00067 1.5E-08 48.8 6.8 51 3-54 343-393 (400)
182 COG4109 Predicted transcriptio 97.4 0.00028 6E-09 50.3 4.6 52 1-52 192-245 (432)
183 COG1253 TlyC Hemolysins and re 97.4 0.00073 1.6E-08 48.8 6.6 56 1-56 210-268 (429)
184 KOG0474 Cl- channel CLC-7 and 97.3 0.00083 1.8E-08 50.8 5.7 52 2-53 695-746 (762)
185 COG2239 MgtE Mg/Co/Ni transpor 97.2 0.0011 2.4E-08 48.4 5.8 52 2-53 137-193 (451)
186 COG3620 Predicted transcriptio 97.1 0.0017 3.8E-08 41.8 5.1 50 1-53 134-183 (187)
187 KOG1764 5'-AMP-activated prote 96.8 0.0033 7.1E-08 45.1 5.1 48 6-53 238-285 (381)
188 COG4536 CorB Putative Mg2+ and 96.6 0.0086 1.9E-07 43.1 6.3 54 5-58 275-328 (423)
189 TIGR03415 ABC_choXWV_ATP choli 95.7 0.043 9.4E-07 39.4 5.9 46 6-53 334-379 (382)
190 COG4175 ProV ABC-type proline/ 94.7 0.11 2.3E-06 37.1 5.4 49 4-53 334-382 (386)
191 COG4535 CorC Putative Mg2+ and 94.5 0.16 3.5E-06 34.8 5.6 51 4-54 139-189 (293)
192 KOG0474 Cl- channel CLC-7 and 94.4 0.04 8.8E-07 42.1 2.8 49 1-49 586-639 (762)
193 COG4535 CorC Putative Mg2+ and 94.3 0.028 6E-07 38.5 1.7 54 1-54 71-127 (293)
194 COG1125 OpuBA ABC-type proline 94.1 0.17 3.6E-06 35.2 5.2 38 14-51 270-307 (309)
195 PRK10070 glycine betaine trans 94.0 0.22 4.9E-06 35.9 6.0 41 12-52 292-332 (400)
196 KOG0475 Cl- channel CLC-3 and 93.9 0.19 4.1E-06 38.5 5.5 50 2-52 644-693 (696)
197 TIGR01186 proV glycine betaine 92.8 0.71 1.5E-05 32.9 6.8 44 9-52 254-297 (363)
198 KOG2550 IMP dehydrogenase/GMP 90.9 0.25 5.4E-06 36.3 2.8 48 5-52 116-166 (503)
199 COG2216 KdpB High-affinity K+ 90.8 0.53 1.1E-05 35.7 4.5 56 16-72 415-471 (681)
200 KOG0476 Cl- channel CLC-2 and 89.3 0.86 1.9E-05 35.9 4.7 53 1-53 592-646 (931)
201 COG4536 CorB Putative Mg2+ and 88.3 0.7 1.5E-05 33.6 3.4 54 1-54 204-260 (423)
202 KOG0476 Cl- channel CLC-2 and 84.0 2.7 6E-05 33.3 4.9 50 5-55 810-859 (931)
203 PF05198 IF3_N: Translation in 80.1 7 0.00015 21.8 4.5 29 28-56 12-40 (76)
204 PF14827 Cache_3: Sensory doma 75.9 3.8 8.3E-05 24.1 2.8 17 30-46 93-109 (116)
205 PF13365 Trypsin_2: Trypsin-li 75.3 2.6 5.7E-05 24.0 2.0 17 27-43 104-120 (120)
206 KOG0475 Cl- channel CLC-3 and 73.4 9.2 0.0002 29.7 4.8 46 9-54 560-608 (696)
207 PF02743 Cache_1: Cache domain 66.1 18 0.00039 19.5 4.0 15 30-44 18-32 (81)
208 PF13596 PAS_10: PAS domain; P 63.2 7.2 0.00016 22.1 2.1 17 28-44 83-99 (106)
209 PF08275 Toprim_N: DNA primase 63.0 8.3 0.00018 23.4 2.4 15 30-44 80-94 (128)
210 PF14221 DUF4330: Domain of un 62.4 7.3 0.00016 24.9 2.2 21 33-53 3-23 (168)
211 KOG1365 RNA-binding protein Fu 61.9 11 0.00024 27.8 3.1 71 10-81 288-370 (508)
212 COG1956 GAF domain-containing 54.6 5.3 0.00012 25.7 0.5 22 30-52 118-139 (163)
213 PF13673 Acetyltransf_10: Acet 54.0 35 0.00076 19.0 4.0 31 16-47 32-62 (117)
214 COG0241 HisB Histidinol phosph 53.8 40 0.00086 22.0 4.5 58 14-71 34-93 (181)
215 PF00944 Peptidase_S3: Alphavi 52.5 16 0.00034 23.2 2.3 15 30-44 109-123 (158)
216 cd03008 TryX_like_RdCVF Trypar 49.6 61 0.0013 20.2 4.7 36 25-60 110-145 (146)
217 PRK00028 infC translation init 47.1 21 0.00045 23.1 2.4 28 27-54 18-45 (177)
218 CHL00199 infC translation init 47.0 28 0.00061 22.8 3.0 28 28-55 24-51 (182)
219 PF10049 DUF2283: Protein of u 46.7 17 0.00036 18.4 1.6 12 33-44 34-45 (50)
220 TIGR00168 infC translation ini 45.7 26 0.00056 22.5 2.6 27 28-54 7-33 (165)
221 COG2461 Uncharacterized conser 44.5 22 0.00048 26.1 2.4 22 27-48 372-393 (409)
222 TIGR00646 MG010 DNA primase-re 43.7 24 0.00053 23.7 2.4 15 30-44 61-75 (218)
223 COG0290 InfC Translation initi 43.2 59 0.0013 21.2 3.9 29 27-55 17-45 (176)
224 PHA00673 acetyltransferase dom 42.6 73 0.0016 20.2 4.3 31 14-44 40-70 (154)
225 PF00949 Peptidase_S7: Peptida 41.6 28 0.00061 21.6 2.3 17 28-44 98-114 (132)
226 smart00481 POLIIIAc DNA polyme 41.4 53 0.0012 17.0 3.7 38 11-49 12-49 (67)
227 PF08448 PAS_4: PAS fold; Int 41.3 29 0.00062 18.8 2.2 17 28-44 83-99 (110)
228 TIGR02038 protease_degS peripl 40.6 26 0.00057 24.8 2.3 17 29-45 200-216 (351)
229 PRK10898 serine endoprotease; 38.1 31 0.00067 24.5 2.3 17 29-45 200-216 (353)
230 PRK10638 glutaredoxin 3; Provi 37.0 72 0.0016 17.2 4.1 21 24-44 46-66 (83)
231 PRK06049 rpl30p 50S ribosomal 36.9 14 0.0003 23.5 0.4 11 70-80 91-101 (154)
232 PF14044 NETI: NETI protein 36.3 58 0.0013 17.3 2.6 24 9-34 3-26 (57)
233 PHA02986 hypothetical protein; 36.1 25 0.00055 21.8 1.4 15 69-83 127-141 (141)
234 PF09939 DUF2171: Uncharacteri 35.9 43 0.00093 18.4 2.2 18 29-46 4-21 (67)
235 PF13508 Acetyltransf_7: Acety 35.1 41 0.00089 17.7 2.1 17 30-46 4-20 (79)
236 PRK11388 DNA-binding transcrip 34.4 44 0.00095 25.4 2.8 23 23-45 140-162 (638)
237 PF06018 CodY: CodY GAF-like d 33.6 89 0.0019 20.3 3.7 19 31-49 38-56 (177)
238 PRK10140 putative acetyltransf 33.3 1.1E+02 0.0023 18.1 4.2 33 15-47 37-69 (162)
239 PF13426 PAS_9: PAS domain; PD 32.1 49 0.0011 17.5 2.1 17 28-44 80-96 (104)
240 COG3290 CitA Signal transducti 30.5 42 0.0009 25.7 2.0 18 31-48 143-160 (537)
241 TIGR02150 IPP_isom_1 isopenten 30.4 60 0.0013 20.0 2.5 20 31-50 1-20 (158)
242 PF08606 Prp19: Prp19/Pso4-lik 30.3 81 0.0018 17.5 2.7 36 45-80 5-43 (70)
243 PF07057 TraI: DNA helicase Tr 29.6 63 0.0014 20.0 2.4 15 30-44 95-109 (126)
244 PF13185 GAF_2: GAF domain; PD 28.9 62 0.0013 18.6 2.3 27 21-48 93-122 (148)
245 COG1414 IclR Transcriptional r 28.2 74 0.0016 21.4 2.8 47 30-79 198-244 (246)
246 PRK15393 NUDIX hydrolase YfcD; 27.2 1.1E+02 0.0025 19.3 3.4 23 28-50 9-31 (180)
247 PF08348 PAS_6: YheO-like PAS 26.9 86 0.0019 18.8 2.7 17 28-44 84-100 (118)
248 COG3981 Predicted acetyltransf 26.7 64 0.0014 21.0 2.2 19 30-48 70-88 (174)
249 PF05239 PRC: PRC-barrel domai 26.6 86 0.0019 16.6 2.5 15 30-44 11-25 (79)
250 COG0450 AhpC Peroxiredoxin [Po 26.5 99 0.0021 20.5 3.1 36 9-44 102-140 (194)
251 PRK08624 hypothetical protein; 26.4 66 0.0014 23.5 2.4 15 30-44 185-199 (373)
252 COG5428 Uncharacterized conser 26.2 54 0.0012 18.1 1.5 16 29-44 31-46 (69)
253 TIGR02037 degP_htrA_DO peripla 25.9 60 0.0013 23.5 2.2 15 30-44 182-196 (428)
254 PF12282 H_kinase_N: Signal tr 25.9 75 0.0016 19.7 2.3 18 28-46 106-123 (145)
255 PF10459 Peptidase_S46: Peptid 25.9 41 0.00088 26.5 1.3 23 30-52 636-661 (698)
256 PRK03972 ribosomal biogenesis 25.6 1.8E+02 0.0038 19.5 4.1 35 10-44 32-67 (208)
257 TIGR01309 L30P_arch 50S riboso 25.5 29 0.00063 22.0 0.4 12 69-80 88-99 (152)
258 PRK10139 serine endoprotease; 24.4 70 0.0015 23.6 2.3 18 28-45 213-230 (455)
259 PF09157 TruB-C_2: Pseudouridi 24.1 74 0.0016 16.1 1.8 18 30-47 30-47 (58)
260 cd02968 SCO SCO (an acronym fo 23.9 1E+02 0.0022 18.0 2.6 15 30-44 126-140 (142)
261 PF06297 PET: PET Domain; Int 23.7 72 0.0016 19.0 1.9 34 6-39 20-53 (106)
262 COG3284 AcoR Transcriptional a 23.7 55 0.0012 25.4 1.7 22 26-47 158-179 (606)
263 TIGR01497 kdpB K+-transporting 23.6 2.1E+02 0.0045 22.6 4.7 53 16-69 414-467 (675)
264 PRK14010 potassium-transportin 23.3 1.4E+02 0.0031 23.4 3.9 55 16-71 409-464 (673)
265 PHA02540 61 DNA primase; Provi 22.8 86 0.0019 22.5 2.4 17 28-44 173-189 (337)
266 PF09308 LuxQ-periplasm: LuxQ, 22.6 82 0.0018 21.5 2.2 17 28-44 129-146 (238)
267 PLN02552 isopentenyl-diphospha 22.3 1.3E+02 0.0028 20.5 3.1 21 29-49 23-43 (247)
268 KOG1930 Focal adhesion protein 22.2 1.4E+02 0.003 22.4 3.4 36 8-44 213-248 (483)
269 COG3277 GAR1 RNA-binding prote 22.1 1E+02 0.0022 18.2 2.3 14 31-44 29-42 (98)
270 COG3798 Uncharacterized protei 22.0 75 0.0016 17.7 1.6 19 29-47 9-27 (75)
271 PF14924 DUF4497: Protein of u 21.7 87 0.0019 18.4 2.0 19 28-46 81-99 (112)
272 PF13905 Thioredoxin_8: Thiore 21.6 1.5E+02 0.0033 15.9 3.0 21 19-39 74-94 (95)
273 KOG3432 Vacuolar H+-ATPase V1 21.2 32 0.0007 20.9 0.0 49 29-77 8-59 (121)
274 cd03012 TlpA_like_DipZ_like Tl 21.1 1.8E+02 0.004 16.7 3.7 15 15-29 72-86 (126)
275 PF02578 Cu-oxidase_4: Multi-c 21.0 1.1E+02 0.0025 20.3 2.6 30 28-57 90-127 (234)
276 cd03035 ArsC_Yffb Arsenate Red 21.0 1.9E+02 0.004 16.7 3.3 32 12-43 70-103 (105)
277 PF12324 HTH_15: Helix-turn-he 20.9 1.5E+02 0.0033 16.7 2.7 11 33-43 66-76 (77)
278 KOG3235 Subunit of the major N 20.8 1.7E+02 0.0037 19.2 3.2 14 31-44 44-57 (193)
279 PF11141 DUF2914: Protein of u 20.8 1.5E+02 0.0034 15.8 2.9 16 30-45 47-62 (66)
280 PRK03759 isopentenyl-diphospha 20.6 85 0.0018 19.9 1.9 21 29-49 6-26 (184)
281 PRK01122 potassium-transportin 20.5 1.8E+02 0.0038 23.0 3.8 52 17-69 414-466 (679)
282 COG3053 CitC Citrate lyase syn 20.4 38 0.00082 24.2 0.2 55 2-59 151-205 (352)
283 PF13420 Acetyltransf_4: Acety 20.2 2E+02 0.0043 16.8 4.0 34 16-49 37-71 (155)
No 1
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.36 E-value=3e-12 Score=67.60 Aligned_cols=53 Identities=26% Similarity=0.454 Sum_probs=49.5
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++|++++.++++++++.++.+.|.+++.+++||+|++|+++|+++..+++...
T Consensus 3 ~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 3 DIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred ECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 46899999999999999999999999999999999999999999999997754
No 2
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.94 E-value=3.1e-09 Score=62.30 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=45.9
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
++|..++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++.
T Consensus 60 ~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 60 EVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred heeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 357777789999999999999999999999999998899999999998753
No 3
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.87 E-value=1.2e-08 Score=60.58 Aligned_cols=49 Identities=24% Similarity=0.444 Sum_probs=44.6
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT 50 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~ 50 (84)
+|.+++.+++++.++.++++.|.+++.+++||+|++|+++|+|+..++.
T Consensus 73 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 73 IGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred cCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 4667788999999999999999999999999999889999999998874
No 4
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.86 E-value=7.8e-09 Score=60.77 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=45.1
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT 50 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~ 50 (84)
+|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..+++
T Consensus 64 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~ 112 (114)
T cd04619 64 VMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDAL 112 (114)
T ss_pred HhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhc
Confidence 5677888999999999999999999999999999889999999998875
No 5
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.84 E-value=1.3e-08 Score=60.44 Aligned_cols=51 Identities=29% Similarity=0.528 Sum_probs=46.0
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
++|.+++..+++++++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus 62 dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 62 DVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred HhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 467788889999999999999999999999999998899999999988753
No 6
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.79 E-value=3.4e-08 Score=58.42 Aligned_cols=49 Identities=10% Similarity=0.196 Sum_probs=43.8
Q ss_pred CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
|..++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++.
T Consensus 71 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 71 DFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 4456679999999999999999999999999998899999999998753
No 7
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.76 E-value=2.3e-08 Score=59.06 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=45.7
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 74 IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 56778889999999999999999999999999998899999999998864
No 8
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.75 E-value=2.8e-08 Score=57.67 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=41.3
Q ss_pred CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHH
Q 047148 7 PECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITH 51 (84)
Q Consensus 7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~ 51 (84)
+.++++++++.++++.|.+++.+++||+|++ |+++|+++..++.+
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 5688999999999999999999999999987 89999999988754
No 9
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.73 E-value=1.9e-08 Score=64.13 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=55.3
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhhhhhhccccchh
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEWHYCNERDLT 69 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~~~~~~~~~~~~ 69 (84)
.+|+.+.+.+++++++.++.+.|.+++++++||+++ ++++|-|+-.++........+..+..+.+++|
T Consensus 69 ~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM 136 (187)
T COG3620 69 TIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVM 136 (187)
T ss_pred hhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHh
Confidence 379999999999999999999999999999999995 89999998888877765554444444444433
No 10
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.72 E-value=5.4e-08 Score=56.80 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=45.1
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++.
T Consensus 63 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 63 VMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred hhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 56677788999999999999999999999999998899999999998753
No 11
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.72 E-value=1.7e-08 Score=69.94 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=50.0
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+||+++.+++++++++.+|...+.+++++.+||+|++.+++|+++..|+....
T Consensus 249 dIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a 301 (382)
T COG3448 249 DIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHA 301 (382)
T ss_pred HhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhcc
Confidence 58999999999999999999999999999999999999999999999987743
No 12
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.72 E-value=3.9e-08 Score=66.79 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=50.5
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI 54 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~ 54 (84)
++|.+++++++.+..+.+|++.|..+++..+.|+|.+|+++|+++..|++....
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 579999999999999999999999999999999999999999999999987653
No 13
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.71 E-value=5.3e-08 Score=56.48 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=45.4
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.+++++.++.++.+.|.+++.+.+||+|++|+++|+++..++..
T Consensus 58 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 58 VMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 46677889999999999999999999999999998899999999998753
No 14
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.69 E-value=6e-08 Score=55.83 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=45.0
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+.+++++.++++.|.+++.+.+||+|++|+++|+++..+++.
T Consensus 57 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 57 IMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred hCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 56777888999999999999999999999999998899999999988763
No 15
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.68 E-value=1.1e-07 Score=56.77 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=44.0
Q ss_pred CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
|.+++.++++++++.++++.|.+++.+++||+|++|+++|+++..++..
T Consensus 77 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 77 KSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 5567789999999999999999999999999998899999999988753
No 16
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.66 E-value=5.5e-08 Score=57.41 Aligned_cols=49 Identities=27% Similarity=0.312 Sum_probs=42.9
Q ss_pred CCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC---CcEEEEEEHHHHH
Q 047148 2 VMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD---GGVAACLDVLQIT 50 (84)
Q Consensus 2 vm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~---g~l~Giv~~~~i~ 50 (84)
+|.+ ++.++++++++.++++.|.+++.+.+||+|++ |+++|+++..++.
T Consensus 63 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 63 IMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred HhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence 4553 57799999999999999999999999999977 6999999988764
No 17
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.66 E-value=9.4e-08 Score=55.83 Aligned_cols=50 Identities=26% Similarity=0.404 Sum_probs=43.7
Q ss_pred CCCCCCeeeeCC--CCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATME--TTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~--~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.+++++ .++.++++.|.+++.+.+||+|++|+++|+++..++++
T Consensus 63 ~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 63 VMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred hcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 466677788877 68999999999999999999998899999999998764
No 18
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.66 E-value=1.1e-07 Score=69.90 Aligned_cols=57 Identities=18% Similarity=0.388 Sum_probs=51.3
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC 57 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~ 57 (84)
++|++++.++++++++.+|++.|.+++.+.+||+|++|+++|+++..++........
T Consensus 72 dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~ 128 (546)
T PRK14869 72 DLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDIL 128 (546)
T ss_pred HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhc
Confidence 468888999999999999999999999999999998899999999999987765443
No 19
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.66 E-value=6.1e-08 Score=56.30 Aligned_cols=50 Identities=58% Similarity=0.963 Sum_probs=44.9
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++++++++.++++.|.+++.+++||++++|+++|+++..++++
T Consensus 63 i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 63 VMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred hcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 46677788999999999999999999999999998899999999998764
No 20
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.65 E-value=8.1e-08 Score=56.21 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=44.2
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++++++++.++++.|.+++.+.+||+|+ |+++|+++..++..
T Consensus 65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 65 IMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred HhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 46677889999999999999999999999999996 99999999998754
No 21
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.65 E-value=1.6e-07 Score=54.04 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=44.6
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+.+..+.+++++.++++.|.+++...+||+|++|+++|+++..++..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 56 HAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred hcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 56667778999999999999999999999999998899999999988753
No 22
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.64 E-value=1.2e-07 Score=55.54 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=43.7
Q ss_pred CCCCCCeeeeC--CCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATM--ETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~--~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+.+..+.. +.++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus 62 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 62 VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 56666677766 999999999999999999999998899999999998754
No 23
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.64 E-value=2.3e-07 Score=54.80 Aligned_cols=48 Identities=21% Similarity=0.442 Sum_probs=43.4
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..++....
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~ 49 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLA 49 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHH
Confidence 567899999999999999999999999999899999999999987543
No 24
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.64 E-value=1.2e-07 Score=55.11 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=44.9
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus 63 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 63 VMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred hccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 46677889999999999999999999999999998899999999998753
No 25
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.63 E-value=1.6e-07 Score=54.50 Aligned_cols=51 Identities=16% Similarity=0.347 Sum_probs=45.5
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
+|.+++..+.++.++.++++.|.+++.+.+||+|++|+++|+++..+++..
T Consensus 58 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 58 IMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 466677899999999999999999999999999988999999999998753
No 26
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.62 E-value=1.5e-07 Score=54.66 Aligned_cols=50 Identities=28% Similarity=0.512 Sum_probs=45.0
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++++++++.++++.|.+++...+||+|++|+++|+++..+++.
T Consensus 64 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 64 VMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred hhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 46677788999999999999999999999999998899999999998853
No 27
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.62 E-value=1.5e-07 Score=54.22 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=45.1
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++++++++.++++.|.+++.+.+||+|++|++.|+++..++..
T Consensus 59 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 59 IMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred hhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 56777889999999999999999999999999998899999999988753
No 28
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.62 E-value=1.8e-07 Score=54.73 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=45.2
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+++..+++.
T Consensus 72 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 72 IMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 56677889999999999999999999999999998799999999998864
No 29
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.61 E-value=1.3e-07 Score=64.99 Aligned_cols=52 Identities=21% Similarity=0.368 Sum_probs=47.8
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++|.+++.++.+++++.++++.|.+++...+||+|++|+++|+++..++...
T Consensus 267 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 267 EAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred HhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 4688888899999999999999999999999999988999999999998764
No 30
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.61 E-value=1.4e-07 Score=55.17 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=44.9
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC--CcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD--GGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~--g~l~Giv~~~~i~~ 51 (84)
+|.+++..+.+++++.++++.|.+++.+.+||+|++ |+++|+++..++..
T Consensus 63 ~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 63 VATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred hccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 466778899999999999999999999999999977 79999999998754
No 31
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.61 E-value=2.1e-07 Score=53.85 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=44.8
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++++++++.++++.|.+++.+.+||++++|++.|+++..++..
T Consensus 60 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 60 IMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred hcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 46677889999999999999999999999999998899999999988753
No 32
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.61 E-value=2.2e-07 Score=64.46 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=53.6
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhhh
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYE 59 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~~ 59 (84)
.+|+++..++.++++..+.+..+.+.+.+++||+|++|+++||++..|++......+.+
T Consensus 319 ~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~~ 377 (382)
T COG3448 319 GIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWSQ 377 (382)
T ss_pred ccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHHH
Confidence 47998999999999999999999999999999999999999999999998887666544
No 33
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.60 E-value=2.2e-07 Score=53.81 Aligned_cols=47 Identities=9% Similarity=0.100 Sum_probs=42.0
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~ 52 (84)
++.+++++.++.++.+.|.+++.+.+||+|++ |+++|+++..|+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~ 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh
Confidence 45788999999999999999999999999974 899999999998653
No 34
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.60 E-value=1.6e-07 Score=54.41 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=44.3
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT 50 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~ 50 (84)
+|.+++..+.++.++.++++.|.+++.+.+||+|++|+++|+++..++.
T Consensus 61 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~ 109 (111)
T cd04639 61 VMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG 109 (111)
T ss_pred HhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence 4667788999999999999999999999999999779999999998875
No 35
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.60 E-value=2.7e-07 Score=53.08 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=42.6
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++..++++.++.++++.|.+++.+.+||+|++|++.|+++..++...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence 56788999999999999998999999999988999999999998653
No 36
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.60 E-value=4.5e-07 Score=52.41 Aligned_cols=49 Identities=24% Similarity=0.437 Sum_probs=43.7
Q ss_pred CCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 4 TSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 4 ~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++++..+++++++.++++.|.+++...+||+|++|++.|+++..++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (110)
T cd04605 1 SRPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKA 49 (110)
T ss_pred CCCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHH
Confidence 3567789999999999999998889999999988999999999998654
No 37
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.59 E-value=1.9e-07 Score=54.20 Aligned_cols=49 Identities=20% Similarity=0.417 Sum_probs=43.7
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+.+.++.+++++.++++.|.+++...+||+| +|+++|+++..++..
T Consensus 63 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 63 IMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred HhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 4666778899999999999999999999999998 589999999998764
No 38
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.59 E-value=4.1e-07 Score=55.72 Aligned_cols=50 Identities=24% Similarity=0.205 Sum_probs=44.6
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI 54 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~ 54 (84)
+++.++++++++.++++.|.+++...+||+|++|+++|+++..+++....
T Consensus 1 ~~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 1 TKYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CCceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence 35678999999999999999889999999998899999999999877553
No 39
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.59 E-value=1.5e-07 Score=55.45 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=44.7
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+.+++++.++++.|.+++.+.+||+|++|++.|+++..++..
T Consensus 72 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 72 IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 45667788999999999999999999999999998899999999988753
No 40
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.58 E-value=1.9e-07 Score=53.72 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=41.2
Q ss_pred CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 7 PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+.++.+++++.++++.|.+++.+.+||+|++|++.|+++..++..
T Consensus 51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 568899999999999999999999999998799999999998764
No 41
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.58 E-value=2e-07 Score=55.04 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=44.9
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+++++++.++++.|.+.+.+.+||+|++|++.|+|+..++..
T Consensus 75 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 75 IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 46677889999999999999999999999999997799999999998764
No 42
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.58 E-value=2.4e-07 Score=53.52 Aligned_cols=50 Identities=28% Similarity=0.423 Sum_probs=44.7
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+++++++.++++.|.+.+.+.+||+|++|++.|+++..++..
T Consensus 61 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 61 VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred hcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 46677888999999999999999999999999998899999999988753
No 43
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.58 E-value=4.2e-07 Score=44.58 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=40.4
Q ss_pred CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 7 PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+.++.+++++.++.+.|.+++.+.+||+++++++.|+++..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~ 46 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIK 46 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHH
Confidence 467889999999999999999999999998899999999988754
No 44
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.57 E-value=3e-07 Score=53.08 Aligned_cols=50 Identities=30% Similarity=0.448 Sum_probs=45.2
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++.+++++.++++.|.+++.+.+||+|++|++.|+++..++..
T Consensus 61 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 61 VMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred hccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 46778889999999999999999999999999998899999999998753
No 45
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.57 E-value=2.5e-07 Score=53.04 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=43.9
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT 50 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~ 50 (84)
+|.+++.++++++++.++++.|.+++.+.+||+|+ |+++|+++..++.
T Consensus 56 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 56 AMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred HccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 56778889999999999999999999999999996 9999999998875
No 46
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.57 E-value=2.4e-07 Score=53.69 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=44.3
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+++++++.++++.|.+++.+.+||++ +|++.|+++..+++.
T Consensus 61 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 61 YMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 5677888999999999999999999999999999 789999999998753
No 47
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.57 E-value=2.6e-07 Score=66.73 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=49.7
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~ 56 (84)
++|.+++.++++++++.++++.|.+++...+||+|++|+++|+++..++.......
T Consensus 199 ~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 199 SIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred HHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence 36888888999999999999999999999999999999999999999987665443
No 48
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.56 E-value=2.7e-07 Score=53.23 Aligned_cols=50 Identities=32% Similarity=0.529 Sum_probs=43.1
Q ss_pred CCCCCCeeeeC-CCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATM-ETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~-~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+.+..+.+ ++++.++++.|.+++.+.+||+|++|+++|+++..+++.
T Consensus 59 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 59 VMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred hcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 46555666666 999999999999999999999998899999999998754
No 49
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.56 E-value=2e-07 Score=63.37 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=49.4
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~ 55 (84)
++|++++.++++++|+.++...+.+++++..||+|+ ++++|+++..++..+...
T Consensus 176 ~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~ 229 (294)
T COG2524 176 NLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIAN 229 (294)
T ss_pred hhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHc
Confidence 478999999999999999999999999999999995 599999999999877654
No 50
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.56 E-value=1.4e-07 Score=56.37 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHH
Q 047148 12 METTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITH 51 (84)
Q Consensus 12 ~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~ 51 (84)
+++++.++++.|.+++.+++||+|++ |+++|+|+..++.+
T Consensus 85 ~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 85 ENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 57899999999999999999999986 79999999998864
No 51
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.56 E-value=2.2e-07 Score=64.22 Aligned_cols=51 Identities=22% Similarity=0.222 Sum_probs=46.7
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++|++++.++.+++++.++++.|.+++++++||+| +|+++|+++..++...
T Consensus 273 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 273 DVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred HhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 46888899999999999999999999999999998 6899999999998764
No 52
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.55 E-value=2.5e-07 Score=67.53 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=50.8
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~ 56 (84)
++|++++.+++++.++.++++.|.+++.+.+||+|++|+++|+|+..++.......
T Consensus 152 diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 152 DVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred HhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 46888999999999999999999999999999999889999999999998766543
No 53
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.55 E-value=1.7e-07 Score=54.76 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=40.1
Q ss_pred CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148 7 PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT 50 (84)
Q Consensus 7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~ 50 (84)
+.++.+++++.++++.|.+++.+++||+|++|+++|+++..+++
T Consensus 69 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~ 112 (114)
T cd04801 69 LVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLL 112 (114)
T ss_pred ceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence 45889999999999999999999999999879999999988764
No 54
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.55 E-value=3e-07 Score=53.25 Aligned_cols=47 Identities=23% Similarity=0.255 Sum_probs=42.7
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus 64 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 64 RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 46778899999999999999999999999998899999999998753
No 55
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.55 E-value=3.1e-07 Score=53.29 Aligned_cols=50 Identities=24% Similarity=0.412 Sum_probs=44.8
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+.+.++++++++.++++.|.+.+.+.+||++++|++.|+++..++..
T Consensus 63 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 63 VMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred hccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 56677889999999999999999999999999998799999999988753
No 56
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.54 E-value=2.3e-07 Score=68.11 Aligned_cols=53 Identities=26% Similarity=0.278 Sum_probs=47.8
Q ss_pred CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++|++ ++.+++++.++.++++.|.+++++.+||+|++|+++|+|+..|+....
T Consensus 165 dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 165 DFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 36775 667899999999999999999999999999889999999999997764
No 57
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.53 E-value=3.8e-07 Score=53.65 Aligned_cols=50 Identities=26% Similarity=0.358 Sum_probs=44.6
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+++++++.++++.|.+.+.+.+||+|++|+++|+++..+++.
T Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 72 VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 46667889999999999999999999999999998799999999988753
No 58
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.53 E-value=3.1e-07 Score=66.99 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=50.7
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~ 56 (84)
++|++++.++++++++.++++.|.+++.+++||+|++|+++|+|+..|+.......
T Consensus 150 dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 150 DIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred HHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 46888999999999999999999999999999999889999999999998765543
No 59
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.53 E-value=4e-07 Score=53.10 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=44.1
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++++++++.++++.|.+++.+.+||++ +|+++|+++..++..
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 4777888999999999999999999999999996 789999999998753
No 60
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.53 E-value=9.1e-07 Score=53.06 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=44.2
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+++.+++++.++.++++.|.+++...+||+|++|+++|+++..++....
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~ 50 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSL 50 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 4678899999999999999999999999999889999999999987644
No 61
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.53 E-value=2.5e-07 Score=53.74 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=43.9
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+.+++++.++++.|.+++.+.+||+|+ |+++|+++..++..
T Consensus 65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 65 IMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred HhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 46667889999999999999999999999999996 89999999998853
No 62
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.52 E-value=4.1e-07 Score=52.62 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=44.4
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..++++.++.++++.|.+.+.+.+||++++|++.|+++..++..
T Consensus 60 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 60 VMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 45667789999999999999999999999999998799999999988753
No 63
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=4.3e-07 Score=52.46 Aligned_cols=49 Identities=27% Similarity=0.499 Sum_probs=43.7
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.+++++.++.++++.|.+.+.+.+||+++ |+++|+++..++..
T Consensus 64 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 64 IMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred hcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 46677789999999999999999999999999996 99999999998753
No 64
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=4.8e-07 Score=53.31 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=45.2
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+++++++.++++.|.+++...+||+|++|+++|+++..+++.
T Consensus 72 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 72 IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 46677889999999999999999999999999998899999999998864
No 65
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.51 E-value=3.7e-07 Score=52.96 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=44.1
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+.+++++.++++.|.+++.+.+||+|+ |+++|+++..++..
T Consensus 62 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 62 IVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 46777889999999999999999999999999997 89999999988753
No 66
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.51 E-value=4.4e-07 Score=52.53 Aligned_cols=50 Identities=28% Similarity=0.457 Sum_probs=45.1
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC-CCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDK-DGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~-~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++++++++.++++.|...+.+.+||+|+ +|+++|+++..++..
T Consensus 63 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 63 IMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred hccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 57778889999999999999999999999999997 789999999988753
No 67
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.51 E-value=3.8e-07 Score=52.83 Aligned_cols=49 Identities=29% Similarity=0.534 Sum_probs=44.0
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+++++++.++++.|.+++.+.+||+++ |+++|+++..++..
T Consensus 62 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 62 VMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 46677889999999999999999999999999996 89999999998753
No 68
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.50 E-value=7.7e-07 Score=51.40 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=42.7
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++..++++.++.++.+.|.+++.+.+||+|++++++|+++..++....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~ 49 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKV 49 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHH
Confidence 467789999999999999988899999999889999999999987543
No 69
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.50 E-value=5.2e-07 Score=54.93 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=43.9
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|+++..++..
T Consensus 86 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 86 IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 56777789999999999999999999999999986 89999999988754
No 70
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.50 E-value=2.7e-07 Score=55.57 Aligned_cols=49 Identities=16% Similarity=0.327 Sum_probs=44.1
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+.++.++.++++.|.+++.+.+||+| +|+++|+++..++..
T Consensus 86 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 86 VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 4667788999999999999999999999999999 899999999988753
No 71
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.50 E-value=4.9e-07 Score=52.62 Aligned_cols=48 Identities=31% Similarity=0.488 Sum_probs=43.5
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHh-CCCCEeEEEcCCC-cEEEEEEHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHD-GKFLHLPVIDKDG-GVAACLDVLQI 49 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~-~~~~~ipVvd~~g-~l~Giv~~~~i 49 (84)
+|++++.++.++.++.++.+.|.+ ++.+.+||+|+++ +++|+++..++
T Consensus 67 v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 67 VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 577778899999999999999999 7999999999885 99999998875
No 72
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.49 E-value=5.5e-07 Score=51.97 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=43.9
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+.+.+++++.++.++++.|.+++.+.+||+| +|+++|+++..++..
T Consensus 55 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 55 YIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred hhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 4667788999999999999999999999999998 689999999998753
No 73
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.49 E-value=3.2e-07 Score=67.43 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=48.4
Q ss_pred CCCC-CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 1 MVMT-SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 1 dvm~-~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++|+ +++.++++++++.++.+.|.+++.+.+||+|++|+++|+++..++....
T Consensus 250 ~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~ 303 (546)
T PRK14869 250 YIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPV 303 (546)
T ss_pred HhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccc
Confidence 4688 8899999999999999999999999999999999999999999987643
No 74
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.48 E-value=6.3e-07 Score=51.97 Aligned_cols=50 Identities=18% Similarity=0.358 Sum_probs=44.7
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+.+++++.++++.|.+++...+||+|++|++.|+++..++..
T Consensus 62 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 62 IMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred hccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 56777889999999999999999888999999998899999999988753
No 75
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.46 E-value=5e-07 Score=53.08 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=44.1
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..++..
T Consensus 72 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 72 IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred HccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 46677889999999999999999999999999997 99999999998863
No 76
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.46 E-value=1.3e-06 Score=50.14 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=43.0
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+++.+++++.++.++.+.|.+++.+.+||+|++|+++|+++..++....
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~ 49 (106)
T cd04582 1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS 49 (106)
T ss_pred CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc
Confidence 3567889999999999999888899999999889999999999987643
No 77
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.45 E-value=7.6e-07 Score=53.42 Aligned_cols=49 Identities=29% Similarity=0.382 Sum_probs=43.8
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..++..
T Consensus 83 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 83 IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred hccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 46677888999999999999999999999999997 99999999998763
No 78
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.45 E-value=6.9e-07 Score=63.19 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=49.7
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI 54 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~ 54 (84)
+|+++|.++.+.++++.+.++|.=.+++.+||+|++.+++|++++.|++.+..
T Consensus 254 VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 254 VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred HhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 69999999999999999999999888999999999999999999999887764
No 79
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.44 E-value=1.1e-06 Score=51.42 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=42.0
Q ss_pred CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 7 PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+.++++++++.++.+.|.+++.+.+||+|++|++.|+++..++....
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~ 49 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQM 49 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHH
Confidence 46788999999999999999999999999999999999999987543
No 80
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.44 E-value=8.2e-07 Score=51.47 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=43.2
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+++++++.++++.|.+++.+.+||+|++ +++|+++..+++.
T Consensus 63 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 63 VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred hcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 466777889999999999999999999999999864 9999999988753
No 81
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.44 E-value=5.2e-07 Score=52.53 Aligned_cols=48 Identities=27% Similarity=0.409 Sum_probs=41.5
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++++++++.++++.|.+.+ .+||+|++|+++|+++..+++.
T Consensus 68 ~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 68 VMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred HhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 46677889999999999999998754 5999998899999999998754
No 82
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.43 E-value=2e-06 Score=50.67 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=43.6
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI 54 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~ 54 (84)
++.++++++++.++.+.|..++...+||+|++|+++|+++..++.....
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 4678999999999999999888999999998899999999999877553
No 83
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.43 E-value=6.5e-07 Score=61.87 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=45.8
Q ss_pred CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++|++ ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++...
T Consensus 206 dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~ 259 (326)
T PRK10892 206 DIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRV 259 (326)
T ss_pred HHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHH
Confidence 46776 78899999999999999998888888888988999999998888653
No 84
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.42 E-value=1.6e-06 Score=50.62 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=42.6
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHA 52 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~ 52 (84)
+++.+++++.++.++++.|.+++.+.+||+|++ |+++|+++..++...
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~ 49 (114)
T cd04630 1 PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKK 49 (114)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHH
Confidence 356789999999999999998899999999987 899999999998764
No 85
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.42 E-value=8.8e-07 Score=51.35 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=43.5
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+++++++.++++.|.+++.+.+||+|+ |+++|+++..++..
T Consensus 62 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 62 IATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 46677889999999999999999999999999985 89999999988753
No 86
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.42 E-value=1.8e-06 Score=50.84 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=43.6
Q ss_pred CCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 4 TSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 4 ~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++++.+++++.++.++.+.|.+++.+.+||+|++|+++|+++..++...
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~ 49 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRH 49 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhh
Confidence 3567889999999999999998889999999988999999999998654
No 87
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.41 E-value=2.2e-06 Score=50.03 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=43.4
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+++.++++++++.++.+.|.+.+...+||+|++|+++|+++..++....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~ 49 (115)
T cd04593 1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRAL 49 (115)
T ss_pred CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 3567889999999999999988899999999889999999999987644
No 88
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.41 E-value=2.1e-06 Score=49.91 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=42.7
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++.++++++++.++.+.|.+++.+.+||+|++|+++|+++..++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~ 49 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKL 49 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHh
Confidence 457889999999999999999999999999889999999999986543
No 89
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.39 E-value=9.4e-07 Score=60.83 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=45.6
Q ss_pred CCCCCC--CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 1 MVMTSS--PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 1 dvm~~~--~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
++|.++ +.++++++++.++.+.|.+++...+||+|++|+++|+++..++..
T Consensus 201 ~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~ 253 (321)
T PRK11543 201 HLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRR 253 (321)
T ss_pred HHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHH
Confidence 368777 889999999999999998888899999999999999999888764
No 90
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.39 E-value=2.1e-06 Score=51.22 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=41.5
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 4678899999999999999888999999998899999999999864
No 91
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.39 E-value=2.7e-06 Score=49.23 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=42.6
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
+++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++...
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~ 48 (112)
T cd04624 1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRA 48 (112)
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHH
Confidence 356788999999999999988889999999988999999999998654
No 92
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.38 E-value=2.6e-06 Score=50.64 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=42.0
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++..++...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~ 48 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDF 48 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHH
Confidence 45678999999999999999999999999988999999998887643
No 93
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.38 E-value=2.4e-06 Score=49.40 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=43.3
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+++.+++++.++.++.+.|.+++...+||+|++|++.|+++..++....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~ 49 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREIL 49 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHH
Confidence 3567889999999999999988889999999889999999999987543
No 94
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.38 E-value=1.2e-06 Score=52.07 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=43.5
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEc--CCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVID--KDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd--~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.+++++.++.++++.|.+++.+.+||++ ++|+++|+|+..+++.
T Consensus 76 ~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 76 AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 5777788999999999999999998899999984 4689999999998753
No 95
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.38 E-value=2.4e-06 Score=49.82 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=41.5
Q ss_pred CCeeeeCCCCHHHHHHHHHhCC-CCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGK-FLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~-~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++.+++++.++.++.+.|.+++ ...+||+|++|+++|+++..++....
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIP 50 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHH
Confidence 5678899999999999887664 88999999889999999999987654
No 96
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.37 E-value=1.4e-06 Score=64.45 Aligned_cols=54 Identities=17% Similarity=0.065 Sum_probs=48.1
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC--CcEEEEEEHHHHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD--GGVAACLDVLQITHAAI 54 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~--g~l~Giv~~~~i~~~~~ 54 (84)
++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+++..|+.+...
T Consensus 516 dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 516 DYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred HhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 4677888899999999999999999999999999876 48999999999987653
No 97
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.37 E-value=1.7e-06 Score=51.54 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=43.1
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
.+.+++++.++.++++.|.+++...+||+|++|+++|+++..+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~ 49 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLL 49 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhh
Confidence 457889999999999999988999999999889999999999987654
No 98
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.37 E-value=2.3e-06 Score=49.96 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=41.9
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++.+++++.++.++.+.|.+++.+.+||+|++|+++|+++..++...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~ 48 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI 48 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence 45788999999999999998889999999988999999999998653
No 99
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.37 E-value=1.4e-06 Score=64.07 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=48.8
Q ss_pred CCCCC--CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148 2 VMTSS--PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55 (84)
Q Consensus 2 vm~~~--~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~ 55 (84)
+|+++ ..++++++++.++++.|.+++.+.+||+|++++++|+|+..++......
T Consensus 168 IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 168 VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 57765 6799999999999999999999999999989999999999999877754
No 100
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.36 E-value=2.3e-06 Score=51.51 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=43.2
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
+++.++.++.++.++.+.|.+++.+.+||+|++|+++|+++..++...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~ 49 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRR 49 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHH
Confidence 567788999999999999999999999999988999999999998654
No 101
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.36 E-value=1.8e-06 Score=63.87 Aligned_cols=79 Identities=22% Similarity=0.176 Sum_probs=61.7
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh-----hhhhhhccccchhhhHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM-----CYEWHYCNERDLTCCFYHL 75 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 75 (84)
++|+.++.++..++.+.+|+-+|.+++++++||.+ +|+++|+++..|++...... ..-.+....+++-.|.+-+
T Consensus 218 evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~~~~vl~~~i~~a~sI~el~~~~e~~ 296 (610)
T COG2905 218 EVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQNSIVLVKRIARASSIEELANTAELL 296 (610)
T ss_pred hhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCCCceeehHHhhhhhhHHHHHHHHHHH
Confidence 48999999999999999999999999999999997 79999999999987765421 1223444447777777666
Q ss_pred HHHHh
Q 047148 76 AKALF 80 (84)
Q Consensus 76 ~~~~~ 80 (84)
.+.+-
T Consensus 297 ~~~~s 301 (610)
T COG2905 297 DDSLS 301 (610)
T ss_pred HHHHH
Confidence 55543
No 102
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.36 E-value=1.3e-06 Score=51.11 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=43.4
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..++..
T Consensus 72 ~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 72 IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 45667788999999999999999999999999986 89999999988753
No 103
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.35 E-value=1.9e-06 Score=48.93 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=44.4
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|..++..+.++.++.++.+.|.+.+.+.+||+|++|++.|+++..++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 63 VMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 45667788899999999999999999999999998899999999988753
No 104
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.34 E-value=4.1e-06 Score=49.54 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=42.3
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~ 53 (84)
++.++++++++.++++.|.+++.+.+||+|++ |+++|+++..++....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~ 50 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFL 50 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHH
Confidence 46788999999999999998889999999987 8999999999987643
No 105
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.33 E-value=3.9e-06 Score=48.60 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=42.4
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++..++++.++.++.+.|.+++.+.+||+|++|++.|+++..++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 49 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLD 49 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHH
Confidence 467889999999999999988899999999889999999999986543
No 106
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.32 E-value=5e-06 Score=47.70 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=42.6
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
+++..++++.++.++.+.|.+++...+||+|++|+++|+++..++...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~ 49 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQA 49 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHH
Confidence 456788999999999999998889999999988999999999998654
No 107
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.32 E-value=3.8e-06 Score=48.38 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=43.0
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI 54 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~ 54 (84)
+++..++++.++.++.+.|.+.+.+.+||+|+ |+++|+++..++.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~ 49 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPA 49 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHh
Confidence 46778999999999999999888899999997 99999999999876543
No 108
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.32 E-value=3.4e-06 Score=48.89 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=42.3
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
+++.+++++.++.++.+.|.+++.+.+||+|++|+++|+++..++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~ 48 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQ 48 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHH
Confidence 356788999999999999988888899999988999999999888754
No 109
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.32 E-value=5.5e-07 Score=54.01 Aligned_cols=51 Identities=6% Similarity=-0.046 Sum_probs=42.9
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHH---------hCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMH---------DGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~---------~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
++|++++.++++++++.++.+.+. +.+.+++||+|++|+++|+++..|++.
T Consensus 63 ~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~ 122 (124)
T cd04608 63 KALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLS 122 (124)
T ss_pred HHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhh
Confidence 368888899999999999998653 335788899998899999999999865
No 110
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.32 E-value=2.4e-06 Score=61.35 Aligned_cols=52 Identities=23% Similarity=0.353 Sum_probs=47.2
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..++...
T Consensus 339 ~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~ 390 (454)
T TIGR01137 339 DLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSA 390 (454)
T ss_pred HhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 4688888999999999999999998889999999988999999999998764
No 111
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.32 E-value=4.7e-06 Score=48.13 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=43.1
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAAI 54 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~~ 54 (84)
++.+++++.++.++.+.|.+++...+||+|++ |+++|+++..++.....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~ 51 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA 51 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH
Confidence 46788999999999999998889999999988 99999999988876543
No 112
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.32 E-value=2.7e-06 Score=49.95 Aligned_cols=48 Identities=23% Similarity=0.386 Sum_probs=42.6
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence 356788999999999999998888999999988999999999998653
No 113
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.32 E-value=3.5e-06 Score=49.67 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=42.4
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~ 53 (84)
++.+++++.++.++++.|.+.+.+.+||+|++ |++.|+++..++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~ 50 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYL 50 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHh
Confidence 56788999999999999998888999999987 9999999999987543
No 114
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.31 E-value=3.6e-06 Score=48.66 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=41.7
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++.++++++++.++.+.|.+.+...+||+|++|++.|+++..++...
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~ 48 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRA 48 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHH
Confidence 46778999999999999988888999999988999999999988654
No 115
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.31 E-value=3.8e-06 Score=49.33 Aligned_cols=48 Identities=25% Similarity=0.433 Sum_probs=42.8
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++.++.++.++.++.+.|.+.+.+.+||+|++|+++|+++..++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~ 49 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAA 49 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHh
Confidence 467889999999999999999999999999889999999999987644
No 116
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=2.7e-06 Score=48.96 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=43.1
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..++..
T Consensus 57 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 57 LMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred HhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 46677788999999999999999999999999984 79999999988753
No 117
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.29 E-value=4.4e-06 Score=50.80 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=42.8
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++.+++++.++.++++.|.+++...+||+|++|+++|+++..+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~ 49 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAE 49 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHh
Confidence 456789999999999999988899999999889999999999987654
No 118
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.28 E-value=6.8e-06 Score=47.39 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=42.4
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+++..++++.++.++.+.|.+++.+.+||+|+ |++.|+++..++....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~ 48 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAI 48 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHH
Confidence 35678899999999999999888999999997 9999999999987654
No 119
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.28 E-value=4.4e-06 Score=48.28 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=42.1
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
.++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++..++..
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~ 48 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAG 48 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhc
Confidence 35678899999999999999888889999998899999999988864
No 120
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.28 E-value=5.8e-06 Score=47.89 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=42.0
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++..+.+++++.++.+.|.+.+.+.+||+|++|+++|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~ 48 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSY 48 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHh
Confidence 35778999999999999999899999999988999999999998653
No 121
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.28 E-value=3.8e-06 Score=50.37 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=42.7
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++..++....
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~ 49 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKI 49 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHH
Confidence 567889999999999999888889999999889999999999886544
No 122
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.28 E-value=2.2e-06 Score=57.43 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=46.5
Q ss_pred CCCCCC-CeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 1 MVMTSS-PECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 1 dvm~~~-~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++|.++ +.++++++++.++++.|.+.+.+.+||+|++|+++|+++..++...
T Consensus 159 ~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~ 211 (268)
T TIGR00393 159 DLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRA 211 (268)
T ss_pred HHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHH
Confidence 468777 8899999999999999998889999999988999999998888654
No 123
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.27 E-value=3.1e-06 Score=61.87 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=46.3
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT 50 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~ 50 (84)
++|.+++.+++++.++.++.+.|.+++...+||+|++++++|+|+..|+.
T Consensus 93 ~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~ 142 (479)
T PRK07807 93 DLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA 142 (479)
T ss_pred cccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh
Confidence 46888999999999999999999999999999999899999999988874
No 124
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.27 E-value=2.1e-06 Score=57.59 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=41.1
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEE
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLD 45 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~ 45 (84)
++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+|+
T Consensus 224 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 224 DFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred HhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 367788889999999999999999999999999998899999983
No 125
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.26 E-value=2.8e-06 Score=62.91 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=47.2
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
|+|++++.++++++++.++.+.|.+++.+.+||+|++|+++|+++..|+...
T Consensus 451 dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~ 502 (574)
T PRK01862 451 ELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSD 502 (574)
T ss_pred HHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHH
Confidence 4688888899999999999999999999999999999999999999998763
No 126
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.25 E-value=3.7e-06 Score=49.16 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=41.8
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCC---EeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFL---HLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~---~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..+.+++++.++++.|.+++.. ..||++++|+++|+++..++..
T Consensus 66 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 66 VMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred hcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 5777888999999999999999877653 3468888899999999988753
No 127
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.25 E-value=1.1e-05 Score=45.70 Aligned_cols=50 Identities=22% Similarity=0.344 Sum_probs=43.6
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~ 55 (84)
++.+++++.++.++.+.|.+++.+.+||+|++++++|+++..++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~ 51 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAE 51 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHh
Confidence 45678899999999999998888999999988999999999998766543
No 128
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.24 E-value=2.4e-06 Score=62.62 Aligned_cols=53 Identities=15% Similarity=0.291 Sum_probs=47.8
Q ss_pred CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++|++ ++.+++++.++.++.+.|.+++.+.+||+|++++++|+|+..++....
T Consensus 163 diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 163 EVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred HhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 35776 778999999999999999999999999999999999999999987664
No 129
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.24 E-value=3.1e-06 Score=61.30 Aligned_cols=52 Identities=25% Similarity=0.439 Sum_probs=47.7
Q ss_pred CCC-CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 2 VMT-SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 2 vm~-~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+|+ +++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..+++...
T Consensus 148 vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 148 VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 566 4788999999999999999999999999999999999999999998765
No 130
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.23 E-value=6.5e-06 Score=48.15 Aligned_cols=47 Identities=32% Similarity=0.472 Sum_probs=41.8
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++...
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDA 48 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHH
Confidence 46788999999999999988888899999988999999999887653
No 131
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.22 E-value=8.2e-06 Score=47.53 Aligned_cols=47 Identities=26% Similarity=0.513 Sum_probs=41.8
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++.+++++.++.++.+.|.+.+.+.+||+|+ |+++|+++..++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~ 48 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLAS 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhh
Confidence 4678899999999999999888999999997 9999999999987654
No 132
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22 E-value=9.7e-06 Score=47.63 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=41.0
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++..++++.++.++.+.|.+++++.+||+|+ |+++|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~ 47 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKA 47 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHH
Confidence 4678899999999999999888999999996 999999999988653
No 133
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.20 E-value=5e-06 Score=57.27 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=47.1
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC 57 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~ 57 (84)
+++.+++++.++.++++.|.+++.+.+||+|+.|.++|+|+..|++......+
T Consensus 140 r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei 192 (292)
T PRK15094 140 RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEI 192 (292)
T ss_pred CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCC
Confidence 34568999999999999999999999999998899999999999988876543
No 134
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.19 E-value=6.5e-06 Score=60.16 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=46.9
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
++|.+++.+++++.++.++.+.|.+++.+.+||+|++++++|+++..++..
T Consensus 91 dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~ 141 (486)
T PRK05567 91 SGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF 141 (486)
T ss_pred hcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh
Confidence 467888999999999999999999999999999999999999999999853
No 135
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.19 E-value=1.1e-05 Score=46.52 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=41.5
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
+++.+++++.++.++.+.|.+++.+.+||+|+ |+++|+++..++...
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~ 47 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNR 47 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHH
Confidence 45678899999999999998888899999997 999999999998653
No 136
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.19 E-value=1e-05 Score=46.40 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=41.6
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++.+++++.++.++.+.|.+++.+.+||+|+ |+++|+++..++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~ 48 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDAL 48 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHH
Confidence 4568899999999999999989999999997 9999999999887653
No 137
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.19 E-value=1.1e-05 Score=46.85 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=41.7
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~ 49 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRA 49 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHH
Confidence 45788999999999999998889999999988999999998887653
No 138
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.18 E-value=7.4e-06 Score=50.04 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=43.3
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT 50 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~ 50 (84)
+|.+++.++.+++++.++++.|.+++.+.+||+++ |+++|+++..+++
T Consensus 94 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~ 141 (143)
T cd04634 94 IMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDII 141 (143)
T ss_pred HcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhh
Confidence 46677889999999999999999999999999997 8999999998875
No 139
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.18 E-value=1.5e-05 Score=46.01 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=42.1
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+++.+++++.++.++.+.|.+++...+||+|+ |+++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~ 49 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKAL 49 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHH
Confidence 46678899999999999998888889999997 9999999999886543
No 140
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.17 E-value=1.2e-05 Score=46.53 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=40.6
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT 50 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~ 50 (84)
+++.++++++++.++.+.|.+++.+.+||+|+ |++.|+++..++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~ 45 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIV 45 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHH
Confidence 35678899999999999999888999999997 9999999998875
No 141
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.17 E-value=1.7e-05 Score=45.88 Aligned_cols=47 Identities=21% Similarity=0.155 Sum_probs=41.2
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++..++++.++.++.+.|.+++...+||+|+ |++.|+++..++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~ 48 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAV 48 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHH
Confidence 4678899999999999999888889999997 8999999999987543
No 142
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.16 E-value=6.1e-06 Score=60.00 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=50.1
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~ 56 (84)
++|.+.+..+.++++.+++.+.+.+++.-.+||+|++++++|+++..|+......+
T Consensus 200 ~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 200 DLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred HHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 46888889999999999999999999999999999999999999999876665444
No 143
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.16 E-value=5.9e-06 Score=47.42 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=39.7
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+|.+++..++++.++.++.+.|.+. . .+||++++|+++|+++..++..
T Consensus 62 ~~~~~~~~v~~~~~l~~~~~~~~~~-~-~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 62 VMGEPLPTVDPDAPIEELSELLDRG-N-VAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HhcCCCceeCCCCcHHHHHHHHHhC-C-ceeEEecCCeEEEEEeHHHhhc
Confidence 4666778899999999999999873 3 4788988899999999998754
No 144
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.16 E-value=8.2e-06 Score=56.22 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=46.3
Q ss_pred CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHH
Q 047148 1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHA 52 (84)
Q Consensus 1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~ 52 (84)
++|++ ++.+++++.+++++.+.+.+++.+.+||++++ ++++|+++.++++..
T Consensus 71 diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~ 125 (292)
T PRK15094 71 DIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 125 (292)
T ss_pred EEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence 47887 57899999999999999999999999999875 789999999998753
No 145
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.15 E-value=1e-05 Score=49.42 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=42.3
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+++.++++++++.++.+.|.+.+...+||+|+ |+++|+++..++....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~ 48 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLL 48 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHH
Confidence 35678999999999999999888999999997 9999999999986543
No 146
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.15 E-value=7.1e-06 Score=59.93 Aligned_cols=52 Identities=31% Similarity=0.483 Sum_probs=47.4
Q ss_pred CCC-CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 2 VMT-SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 2 vm~-~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+|+ +++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++....
T Consensus 152 im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 152 VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 566 6778999999999999999999999999999999999999999997664
No 147
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.14 E-value=1.9e-05 Score=45.36 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=41.3
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++.+++++.++.++.+.|.+++.+.+||+|+ |+++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~ 48 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLL 48 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHH
Confidence 4567899999999999999888889999986 8999999999987654
No 148
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.13 E-value=1.8e-05 Score=46.29 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=41.5
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++..+.++.++.++.+.|.+++.+.+||+|+ |+++|+++..++....
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~ 48 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADAL 48 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhh
Confidence 5678899999999999998888999999996 9999999999887543
No 149
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.13 E-value=1.3e-05 Score=46.03 Aligned_cols=46 Identities=24% Similarity=0.423 Sum_probs=41.1
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT 50 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~ 50 (84)
+++..+.++.++.++.+.|.+++...+||+|++|++.|+++..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~ 47 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLR 47 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHee
Confidence 4567889999999999999888889999999889999999988865
No 150
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.13 E-value=1.3e-05 Score=46.72 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=41.1
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC---CCcEEEEEEHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDK---DGGVAACLDVLQITH 51 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~---~g~l~Giv~~~~i~~ 51 (84)
.++.++++++++.++++.|.+++...+||+|+ +|+++|+++..++..
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~ 51 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence 35678899999999999998888889999997 689999999888764
No 151
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.12 E-value=1.6e-05 Score=45.31 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=40.1
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
++..+++++++.++++.|.+++.+.+||+| +|+++|+++..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~ 46 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRR 46 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhc
Confidence 567889999999999999888888999998 689999999998865
No 152
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.11 E-value=2.8e-05 Score=44.91 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=40.6
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++.+++++.++.++.+.|.+++.+.+||+|+ |+++|+++..++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~ 47 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALR 47 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHH
Confidence 4677899999999999998888889999997 999999999998643
No 153
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.09 E-value=1.3e-05 Score=58.05 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=46.1
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC---CcEEEEEEHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD---GGVAACLDVLQITH 51 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~---g~l~Giv~~~~i~~ 51 (84)
+.|.+++.+++++.++.++++.|.+++++.+||+|++ ++++|+++.+++..
T Consensus 84 ~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 84 NGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF 137 (450)
T ss_pred CceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh
Confidence 3567788999999999999999999999999999987 79999999999864
No 154
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.09 E-value=2e-05 Score=46.01 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=40.0
Q ss_pred CCeeeeCCCCHHHHHHHHHhCC-CCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGK-FLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~-~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++.++++++++.++.+.|...+ .+.+||+|+ |++.|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~ 48 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMEL 48 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHH
Confidence 4567899999999999998776 889999998 999999999887643
No 155
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.08 E-value=1.5e-05 Score=57.13 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=46.4
Q ss_pred CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHH
Q 047148 1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHA 52 (84)
Q Consensus 1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~ 52 (84)
++|++ ++.+++.++++.++.+.+.+++.+.+||.+++ ++++|+++.+|++..
T Consensus 195 diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~ 249 (408)
T TIGR03520 195 QVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPH 249 (408)
T ss_pred eeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhH
Confidence 58987 67899999999999999999999999999864 689999999999753
No 156
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.05 E-value=2.6e-05 Score=45.04 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=40.9
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++.+++++.++.++.+.|.+.+...+||+|++|+++|+++..++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~ 50 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRAL 50 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHH
Confidence 456788999999999999888888999999889999999987776543
No 157
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.03 E-value=2.9e-05 Score=44.63 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=39.4
Q ss_pred eeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 8 ECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 8 ~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
.+++++.++.++.+.|.+.+...+||+|+ |++.|+++..++...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~ 47 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA 47 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence 56789999999999999888999999997 999999999988653
No 158
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.01 E-value=4.6e-05 Score=43.97 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=40.5
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++.+++++.++.++.+.|.+.+.+.+||+|+ ++++|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~ 47 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKK 47 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence 5677899999999999999888999999996 599999999998764
No 159
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.00 E-value=4e-05 Score=43.82 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=40.4
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+++.+++.+.++.++.+.|.+.+...+||+|+ ++++|+++..++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~ 47 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLG 47 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 46778899999999999998888888999996 99999999988764
No 160
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.00 E-value=5.1e-05 Score=43.53 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=40.8
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
+..+++++.++.++.+.|.+.+...+||+|++|++.|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~ 48 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN 48 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence 45678889999999999988888899999988999999999887643
No 161
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.99 E-value=2.7e-05 Score=55.90 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=47.2
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~ 56 (84)
+++.+++++.++.++++.|.+++.+..+|+|+.|...|+|+..|++.....+
T Consensus 262 ~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivge 313 (408)
T TIGR03520 262 REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGD 313 (408)
T ss_pred CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCC
Confidence 4578999999999999999999999999999989999999999998887544
No 162
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.97 E-value=2.3e-05 Score=45.32 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=36.0
Q ss_pred eeCCCCHHHHHHHHHhCC-----CCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 10 ATMETTILDALHIMHDGK-----FLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 10 v~~~~~l~~a~~~m~~~~-----~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
+++++++.++++.|.+++ ...+||+|++|+++|+++..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~ 48 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLL 48 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhc
Confidence 568899999999998766 468999998899999999888764
No 163
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.97 E-value=3e-05 Score=57.08 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=44.4
Q ss_pred CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC---CCcEEEEEEHHHHHH
Q 047148 3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDK---DGGVAACLDVLQITH 51 (84)
Q Consensus 3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~---~g~l~Giv~~~~i~~ 51 (84)
|.+++.+++++.++.++.+.|.++++..+||+|+ +|+++|+|+..++..
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~ 157 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF 157 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh
Confidence 6688899999999999999999999999999996 389999999999854
No 164
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.95 E-value=3.4e-05 Score=56.68 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=44.7
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC---CcEEEEEEHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD---GGVAACLDVLQITH 51 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~---g~l~Giv~~~~i~~ 51 (84)
.|.+++.++++++++.++.+.|.++++..+||+|++ ++++|+++.+++..
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~ 153 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF 153 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh
Confidence 467788999999999999999999999999999973 79999999999853
No 165
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.95 E-value=6.9e-05 Score=43.21 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=39.0
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
...++++++++.++.+.|.+++...++|.+ +|+++|+++..++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~ 48 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAM 48 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHH
Confidence 356788999999999999887777777766 59999999999987543
No 166
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.92 E-value=0.00011 Score=42.54 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=47.3
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM 56 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~ 56 (84)
+|.+++.++.++.++.++...|.++++..+||++. ++++|+++..++.......
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~ 57 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAG 57 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcc
Confidence 45678889999999999999999999999999984 4899999999998877544
No 167
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.91 E-value=6.5e-05 Score=43.63 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=41.5
Q ss_pred CeeeeCCCCHHHHHHHHHhCCCCEeEEEcC---CCcEEEEEEHHHHHHHHH
Q 047148 7 PECATMETTILDALHIMHDGKFLHLPVIDK---DGGVAACLDVLQITHAAI 54 (84)
Q Consensus 7 ~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~---~g~l~Giv~~~~i~~~~~ 54 (84)
...++++.++.++.+.+.+.+...+||+|+ +|+++|+++..++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~ 54 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK 54 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH
Confidence 457789999999999998888888999998 689999999999876553
No 168
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.87 E-value=9.4e-05 Score=42.93 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=38.7
Q ss_pred CCeeeeCCCCHHHHHHHHHhCC-CCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGK-FLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~-~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++..++++.++.++.+.|.+++ ...+||.| +|+++|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~ 48 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRL 48 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHH
Confidence 4678899999999999998777 66777777 5899999999998754
No 169
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.83 E-value=5.9e-05 Score=54.65 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=44.5
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHh-----CCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHD-----GKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~-----~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
++|++++.+++++.++.++.+.|.+ ++...+||+|++++++|+++.+++..
T Consensus 135 ~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~ 190 (449)
T TIGR00400 135 RIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL 190 (449)
T ss_pred HhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc
Confidence 4788888999999999999999975 45678899998899999999999864
No 170
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.81 E-value=9.9e-05 Score=52.36 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=44.1
Q ss_pred CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
|.+...+++++.++.+++..|.+++.. +||+|++|+++|+|+..++....
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 308 LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL 357 (363)
T ss_pred hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence 455667899999999999999998888 99999999999999999887665
No 171
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.78 E-value=8.5e-05 Score=54.42 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=43.8
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQIT 50 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~ 50 (84)
++|.+++.++++++++.++++.|.+++.+.+||+| +++++|+++..|+.
T Consensus 92 eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~ 140 (475)
T TIGR01303 92 DLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLL 140 (475)
T ss_pred hccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhh
Confidence 35778899999999999999999999999999988 47999999998874
No 172
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.73 E-value=0.00015 Score=51.78 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=47.2
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhh
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCY 58 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~ 58 (84)
..++++++.++.++++.|..+++++++|+|++|.++|++++.|++........
T Consensus 311 ~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~ 363 (381)
T KOG1764|consen 311 GVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPS 363 (381)
T ss_pred ccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCcc
Confidence 35789999999999999999999999999999999999999999887765543
No 173
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.69 E-value=0.00011 Score=54.13 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=41.3
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcC---CCcEEEEEEHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDK---DGGVAACLDVLQITH 51 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~---~g~l~Giv~~~~i~~ 51 (84)
++.++++++++.++++.|.+++...+||+|+ +|+++|+|+..|+..
T Consensus 106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~ 154 (502)
T PRK07107 106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRI 154 (502)
T ss_pred CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhc
Confidence 4568999999999999999999999999996 589999999999853
No 174
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.66 E-value=0.0001 Score=54.91 Aligned_cols=54 Identities=22% Similarity=0.253 Sum_probs=49.0
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~ 55 (84)
+++.++++++++.++.+|..+|.+++++.+.++++++.+.||++..++...-..
T Consensus 154 ~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~ 207 (610)
T COG2905 154 VKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIA 207 (610)
T ss_pred HhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHh
Confidence 577889999999999999999999999999999999999999999998776654
No 175
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.61 E-value=0.00011 Score=44.88 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCC
Q 047148 3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG 38 (84)
Q Consensus 3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g 38 (84)
|.+++.++++++++.++++.|.+++.+.+||+|+++
T Consensus 84 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 84 QECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred cCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 456788999999999999999999999999998654
No 176
>PRK11573 hypothetical protein; Provisional
Probab=97.58 E-value=0.0003 Score=50.65 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=47.9
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhh
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMC 57 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~ 57 (84)
+++..++++.++.++++.|++++.+...|+|+-|...|+|+..|++.....+.
T Consensus 262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei 314 (413)
T PRK11573 262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 314 (413)
T ss_pred cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence 46778999999999999999999999999999999999999999988876554
No 177
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.56 E-value=9e-05 Score=53.55 Aligned_cols=53 Identities=28% Similarity=0.343 Sum_probs=48.3
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++|++++.+.+...++.++.+++.+++...+||+|++|+++.++...|+.++.
T Consensus 175 ~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 175 DVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred hhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 57888888889999999999999999999999999999999999999887665
No 178
>PRK11573 hypothetical protein; Provisional
Probab=97.48 E-value=0.0006 Score=49.14 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=45.3
Q ss_pred CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHH
Q 047148 1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHA 52 (84)
Q Consensus 1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~ 52 (84)
++|++ +..+++.+.++.++.+.+.+++...+||.+++ ++++|+++.+|++..
T Consensus 191 eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~ 245 (413)
T PRK11573 191 DIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRL 245 (413)
T ss_pred hcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHH
Confidence 57886 55689999999999999999999999998754 789999999998754
No 179
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.48 E-value=0.00033 Score=50.40 Aligned_cols=48 Identities=8% Similarity=0.129 Sum_probs=39.8
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
+|.+++.++++++++.++++.|.+++ .|+++++|+++|+|+..+++..
T Consensus 405 im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 405 VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF 452 (454)
T ss_pred hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence 57778889999999999999998754 3555557999999999998765
No 180
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.45 E-value=0.00054 Score=49.45 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=48.2
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhh
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCY 58 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~ 58 (84)
++..++++.++.++++.|++.+.+...|+|+-|...|+|+..|++.....++.
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~ 332 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIP 332 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCc
Confidence 67899999999999999999999999999999999999999999888765544
No 181
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00067 Score=48.75 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=43.3
Q ss_pred CCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148 3 MTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI 54 (84)
Q Consensus 3 m~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~ 54 (84)
+.+...++++++++.+++..+.+.... +||+|++|+++|+|+..+++....
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 343 LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 344567899999999999999887655 999999999999999999877654
No 182
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.43 E-value=0.00028 Score=50.31 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=45.9
Q ss_pred CCCC--CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 1 MVMT--SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 1 dvm~--~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
|+|+ ..+.++.+++++++..++-.+.+...+||+|+..+++|+++.+|+...
T Consensus 192 di~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~ 245 (432)
T COG4109 192 DIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK 245 (432)
T ss_pred HhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC
Confidence 4676 467789999999999999999999999999999999999988887554
No 183
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.39 E-value=0.00073 Score=48.77 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=48.4
Q ss_pred CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEc-CCCcEEEEEEHHHHHHHHHhh
Q 047148 1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVID-KDGGVAACLDVLQITHAAISM 56 (84)
Q Consensus 1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd-~~g~l~Giv~~~~i~~~~~~~ 56 (84)
++|++ +..+++.+.+.+++.+.+.+.+...+||.+ +.+.++|+++.+|++......
T Consensus 210 eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 210 EIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred eEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 47886 455788889999999999999999999999 557899999999998887655
No 184
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00083 Score=50.84 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=48.2
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
.|++.|.++++++++..+...+++-+.+|+.|++..++.+|+++++|++...
T Consensus 695 ~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 695 FMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred ccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 5788999999999999999999999999999999999999999999997554
No 185
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0011 Score=48.43 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=45.7
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHh-----CCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHD-----GKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~-----~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+|++.+++++++.|+.+++..+++ .....+.|+|+++++.|+++.++++.+.
T Consensus 137 ~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~ 193 (451)
T COG2239 137 IMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE 193 (451)
T ss_pred cceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC
Confidence 688999999999999999999883 3478899999999999999999987443
No 186
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.07 E-value=0.0017 Score=41.75 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=41.3
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
++|..++.+++++.++.-+..++..+ ..+.|+ ++|+++|||+..|++...
T Consensus 134 ~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 134 EVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLL 183 (187)
T ss_pred HHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHH
Confidence 47888889999999999998887665 457777 589999999999987654
No 187
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.78 E-value=0.0033 Score=45.05 Aligned_cols=48 Identities=25% Similarity=0.477 Sum_probs=42.4
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
+...+..+.++.+|+++|.++++..+||+|++|+.+|.++..|+....
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~ 285 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLA 285 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhh
Confidence 466788899999999999999999999999999999999888865543
No 188
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.0086 Score=43.09 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=47.2
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhh
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCY 58 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~ 58 (84)
.+|..+++++++.+-+..|.+++-+.-.|+|+=|.+.|+++++|++......+.
T Consensus 275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccc
Confidence 467789999999999999999988888999999999999999999888754443
No 189
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.66 E-value=0.043 Score=39.36 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=38.1
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
...++++++++.+++..+.+.... +||+|+ |+++|+|+..+++...
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHAL 379 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHH
Confidence 456789999999999988776544 888885 9999999999887654
No 190
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.72 E-value=0.11 Score=37.15 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=38.8
Q ss_pred CCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHH
Q 047148 4 TSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 4 ~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~ 53 (84)
.+.+.++.+++++.+.+..+.+.. -.+||+|++|+++|+++...++...
T Consensus 334 ~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 334 IDDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEAL 382 (386)
T ss_pred cccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHH
Confidence 345567888889998888876654 4588999999999999888876654
No 191
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=94.49 E-value=0.16 Score=34.85 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=43.9
Q ss_pred CCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148 4 TSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAI 54 (84)
Q Consensus 4 ~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~ 54 (84)
.++.+.++++-.+...++-++.++-+...|+|+=|.+.|+|+++|++....
T Consensus 139 LRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIV 189 (293)
T COG4535 139 LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIV 189 (293)
T ss_pred cccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHh
Confidence 356678888888999999999988999999999999999999999876654
No 192
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.36 E-value=0.04 Score=42.10 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=41.1
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-----CcEEEEEEHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKD-----GGVAACLDVLQI 49 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-----g~l~Giv~~~~i 49 (84)
|+|+++.++++....+..+.+.+.....+.+||+|+. +++.|+|=+.++
T Consensus 586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl 639 (762)
T KOG0474|consen 586 EVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHL 639 (762)
T ss_pred hhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHH
Confidence 5788888899999999999999999999999999854 467888844443
No 193
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=94.31 E-value=0.028 Score=38.47 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=44.2
Q ss_pred CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHHH
Q 047148 1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAAI 54 (84)
Q Consensus 1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~~ 54 (84)
|+|.+ ...+++.+.++.+.+..+.+...+.+||+.++ .++.||+-.+|+++...
T Consensus 71 DiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~ 127 (293)
T COG4535 71 DIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR 127 (293)
T ss_pred hhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc
Confidence 46765 34578889999999999999999999999644 67999998888877543
No 194
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.10 E-value=0.17 Score=35.25 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHH
Q 047148 14 TTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITH 51 (84)
Q Consensus 14 ~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~ 51 (84)
....+++..+...+...+||+|++|+++|.++..++..
T Consensus 270 ~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 270 FVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred hhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 34455666667778999999999999999999988754
No 195
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.03 E-value=0.22 Score=35.92 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 12 METTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 12 ~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
++.+..++++.|...+.+.++|+|+++++.|+++..++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 332 (400)
T PRK10070 292 PGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTA 332 (400)
T ss_pred CCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhh
Confidence 56688899999999999999999999999999999988643
No 196
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.87 E-value=0.19 Score=38.48 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=43.5
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
+|...|.++....+.+-+++++++-+.+++.|. ++|++.|+|+.+|.+..
T Consensus 644 il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 644 ILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH 693 (696)
T ss_pred eccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence 566778899999999999999999999999765 58999999999998654
No 197
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=92.80 E-value=0.71 Score=32.94 Aligned_cols=44 Identities=27% Similarity=0.369 Sum_probs=37.2
Q ss_pred eeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH
Q 047148 9 CATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 9 ~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
...++.+..++.+.|...+.+...|+|+++++.|+++..++...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 297 (363)
T TIGR01186 254 TKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQA 297 (363)
T ss_pred eecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHH
Confidence 44566788999999998889999999999999999998887543
No 198
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=90.92 E-value=0.25 Score=36.30 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=40.1
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC---CcEEEEEEHHHHHHH
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKD---GGVAACLDVLQITHA 52 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~---g~l~Giv~~~~i~~~ 52 (84)
.+|.+++|+.++.++++....+++..+|+.+.. .+|+|+|+-+|+...
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~ 166 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL 166 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh
Confidence 467889999999999999889999999998632 589999988887443
No 199
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=90.81 E-value=0.53 Score=35.72 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh-hhhhhhccccchhhhH
Q 047148 16 ILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM-CYEWHYCNERDLTCCF 72 (84)
Q Consensus 16 l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~-~~~~~~~~~~~~~~~~ 72 (84)
+.++.+...+.+-.-++|+. +|++.|+|.+.|+.+....+ +.++++...+-+||+-
T Consensus 415 l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TG 471 (681)
T COG2216 415 LDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITG 471 (681)
T ss_pred HHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeC
Confidence 55666666677777788886 78999999999998877655 8889999999999974
No 200
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=89.28 E-value=0.86 Score=35.91 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=44.0
Q ss_pred CCCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCC--cEEEEEEHHHHHHHH
Q 047148 1 MVMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDG--GVAACLDVLQITHAA 53 (84)
Q Consensus 1 dvm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g--~l~Giv~~~~i~~~~ 53 (84)
++|.++..++..+.+..|..+.+....++.+|+||+.+ -++|.|.+..+....
T Consensus 592 ~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 592 HIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred eeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 47899999999999999999988876699999998553 589999777765544
No 201
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=88.26 E-value=0.7 Score=33.60 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=43.7
Q ss_pred CCCCC--CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEEEHHHHHHHHH
Q 047148 1 MVMTS--SPECATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACLDVLQITHAAI 54 (84)
Q Consensus 1 dvm~~--~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv~~~~i~~~~~ 54 (84)
|+|.+ +...+..+++.+++++.+...-...+|+..++ +.++|++..+++.+...
T Consensus 204 DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~ 260 (423)
T COG4536 204 DIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLN 260 (423)
T ss_pred eeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhh
Confidence 57875 45588999999999999988888899998543 57999999998866653
No 202
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=84.04 E-value=2.7 Score=33.25 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=42.5
Q ss_pred CCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148 5 SSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAIS 55 (84)
Q Consensus 5 ~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~ 55 (84)
+.|..+.+.+|+.++=.++.--++++..|.+ -|+++|+|.+.++..+..+
T Consensus 810 paPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 810 PAPFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIEN 859 (931)
T ss_pred CCceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHh
Confidence 4567788899999999988888899999987 6999999999988776644
No 203
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=80.06 E-value=7 Score=21.83 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=20.9
Q ss_pred CCEeEEEcCCCcEEEEEEHHHHHHHHHhh
Q 047148 28 FLHLPVIDKDGGVAACLDVLQITHAAISM 56 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv~~~~i~~~~~~~ 56 (84)
.+.+-++|++|+..|+++..+++......
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~ 40 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEK 40 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHc
Confidence 45677899999999999999987665433
No 204
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=75.94 E-value=3.8 Score=24.11 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=12.5
Q ss_pred EeEEEcCCCcEEEEEEH
Q 047148 30 HLPVIDKDGGVAACLDV 46 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv~~ 46 (84)
..||.|.+|+++|++..
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 46999889999999953
No 205
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=75.30 E-value=2.6 Score=23.98 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=13.8
Q ss_pred CCCEeEEEcCCCcEEEE
Q 047148 27 KFLHLPVIDKDGGVAAC 43 (84)
Q Consensus 27 ~~~~ipVvd~~g~l~Gi 43 (84)
+..-=||+|.+|+++|+
T Consensus 104 G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 104 GSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp TTTTSEEEETTSEEEEE
T ss_pred CcEeHhEECCCCEEEeC
Confidence 44556899999999997
No 206
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=73.45 E-value=9.2 Score=29.72 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=35.5
Q ss_pred eeeCC-CCHHHHHHHHHhCCCCEeEEEc--CCCcEEEEEEHHHHHHHHH
Q 047148 9 CATME-TTILDALHIMHDGKFLHLPVID--KDGGVAACLDVLQITHAAI 54 (84)
Q Consensus 9 ~v~~~-~~l~~a~~~m~~~~~~~ipVvd--~~g~l~Giv~~~~i~~~~~ 54 (84)
.++.+ .++.+....|.+.....+||+- +.++++|++..+++.....
T Consensus 560 ~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~ 608 (696)
T KOG0475|consen 560 VITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAIL 608 (696)
T ss_pred eccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHh
Confidence 34444 7899999999998888888873 3468999999888766554
No 207
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=66.09 E-value=18 Score=19.49 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=13.0
Q ss_pred EeEEEcCCCcEEEEE
Q 047148 30 HLPVIDKDGGVAACL 44 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv 44 (84)
..||.+++|+++|++
T Consensus 18 s~pi~~~~g~~~Gvv 32 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVV 32 (81)
T ss_dssp EEEEEETTTEEEEEE
T ss_pred EEEEECCCCCEEEEE
Confidence 368999889999998
No 208
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=63.17 E-value=7.2 Score=22.06 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=12.4
Q ss_pred CCEeEEEcCCCcEEEEE
Q 047148 28 FLHLPVIDKDGGVAACL 44 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv 44 (84)
++..|+.|++|++.|++
T Consensus 83 ~~~~P~~~~~g~~~G~v 99 (106)
T PF13596_consen 83 VRYRPYRDEDGEYAGAV 99 (106)
T ss_dssp EEEEEEE-TTS-EEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 45678898889999988
No 209
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=63.01 E-value=8.3 Score=23.41 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=11.8
Q ss_pred EeEEEcCCCcEEEEE
Q 047148 30 HLPVIDKDGGVAACL 44 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv 44 (84)
.+||.|+.|+++|+-
T Consensus 80 ifPI~d~~G~vvgF~ 94 (128)
T PF08275_consen 80 IFPIRDERGRVVGFG 94 (128)
T ss_dssp EEEEE-TTS-EEEEE
T ss_pred EEEEEcCCCCEEEEe
Confidence 579999999999998
No 210
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=62.45 E-value=7.3 Score=24.92 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=17.8
Q ss_pred EEcCCCcEEEEEEHHHHHHHH
Q 047148 33 VIDKDGGVAACLDVLQITHAA 53 (84)
Q Consensus 33 Vvd~~g~l~Giv~~~~i~~~~ 53 (84)
++|++|++.|-+++-|+.-..
T Consensus 3 iiD~kGrlFgkiniiDl~~~l 23 (168)
T PF14221_consen 3 IIDSKGRLFGKINIIDLLAIL 23 (168)
T ss_pred ccccCCcEeeeEeHHHHHHHH
Confidence 689999999999999975443
No 211
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=61.88 E-value=11 Score=27.81 Aligned_cols=71 Identities=21% Similarity=0.225 Sum_probs=47.0
Q ss_pred eeCCCCHHHHHHHHHhCC----C--CEeEEEcCCCcEEEEE-----EHHHHHHHHHhhhhhhhhccccchhhhHH-HHHH
Q 047148 10 ATMETTILDALHIMHDGK----F--LHLPVIDKDGGVAACL-----DVLQITHAAISMCYEWHYCNERDLTCCFY-HLAK 77 (84)
Q Consensus 10 v~~~~~l~~a~~~m~~~~----~--~~ipVvd~~g~l~Giv-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 77 (84)
++-+.+++++++++.+.. . -| -|+|.+|+..|=. +.++.......+..++...+..+|.-|+. +|..
T Consensus 288 LPy~AtvEdIL~FlgdFa~~i~f~gVH-mv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 288 LPYEATVEDILDFLGDFATDIRFQGVH-MVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred CChhhhHHHHHHHHHHHhhhcccceeE-EEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 344567788887765422 1 12 2678889887733 66666666677777777677777777775 5777
Q ss_pred HHhh
Q 047148 78 ALFG 81 (84)
Q Consensus 78 ~~~~ 81 (84)
+|.|
T Consensus 367 vL~~ 370 (508)
T KOG1365|consen 367 VLSG 370 (508)
T ss_pred HHhc
Confidence 7765
No 212
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=54.60 E-value=5.3 Score=25.70 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=16.8
Q ss_pred EeEEEcCCCcEEEEEEHHHHHHH
Q 047148 30 HLPVIDKDGGVAACLDVLQITHA 52 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv~~~~i~~~ 52 (84)
.+||.. +|+++|++|+......
T Consensus 118 VvPi~~-~g~~iGvlDiDS~~~~ 139 (163)
T COG1956 118 VVPIFK-DGKLIGVLDIDSPTPG 139 (163)
T ss_pred EEEEEE-CCEEEEEEecCCCCcc
Confidence 479987 7999999977664433
No 213
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=54.00 E-value=35 Score=19.04 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHH
Q 047148 16 ILDALHIMHDGKFLHLPVIDKDGGVAACLDVL 47 (84)
Q Consensus 16 l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~ 47 (84)
.....+.+.+ +...+.|...+|+++|++...
T Consensus 32 ~~~~~~~~~~-~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 32 PEDLEEYLEE-GSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp HHHHHHHHCT-CCCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHh-cCCEEEEEEECCEEEEEEEEc
Confidence 4444445544 335666777789999999543
No 214
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=53.76 E-value=40 Score=21.98 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHH--HHhhhhhhhhccccchhhh
Q 047148 14 TTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHA--AISMCYEWHYCNERDLTCC 71 (84)
Q Consensus 14 ~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~--~~~~~~~~~~~~~~~~~~~ 71 (84)
..+-+++..+.+.+...++|.|.+|--.|..+..++... .+...-........++..|
T Consensus 34 ~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~C 93 (181)
T COG0241 34 PGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYC 93 (181)
T ss_pred ccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEEC
Confidence 455678888888899999999988989999977776433 2223333344445555555
No 215
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=52.55 E-value=16 Score=23.15 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=13.2
Q ss_pred EeEEEcCCCcEEEEE
Q 047148 30 HLPVIDKDGGVAACL 44 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv 44 (84)
-=|+.|..|+++||+
T Consensus 109 GRpi~DNsGrVVaIV 123 (158)
T PF00944_consen 109 GRPIFDNSGRVVAIV 123 (158)
T ss_dssp TEEEESTTSBEEEEE
T ss_pred CCccCcCCCCEEEEE
Confidence 358999999999998
No 216
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=49.65 E-value=61 Score=20.17 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=20.5
Q ss_pred hCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhhhh
Q 047148 25 DGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYEW 60 (84)
Q Consensus 25 ~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~~~ 60 (84)
-.++....++|++|+++.-=-..++......++.+|
T Consensus 110 v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~~~w 145 (146)
T cd03008 110 VEELPTVVVLKPDGDVLAANAVDEILRLGPACFRNW 145 (146)
T ss_pred CCCCCEEEEECCCCcEEeeChHHHHHHHHHHHHHhc
Confidence 345666667777777665434444444455555554
No 217
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=47.10 E-value=21 Score=23.13 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=22.6
Q ss_pred CCCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148 27 KFLHLPVIDKDGGVAACLDVLQITHAAI 54 (84)
Q Consensus 27 ~~~~ipVvd~~g~l~Giv~~~~i~~~~~ 54 (84)
+...+-|+|++|...|+++..+++....
T Consensus 18 ~~~~Vrli~~dG~~lgv~~~~eAl~~A~ 45 (177)
T PRK00028 18 RAREVRLIGDDGEQLGIVSTREALELAE 45 (177)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHHH
Confidence 3566788999999999999998866553
No 218
>CHL00199 infC translation initiation factor 3; Provisional
Probab=47.04 E-value=28 Score=22.78 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=22.6
Q ss_pred CCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148 28 FLHLPVIDKDGGVAACLDVLQITHAAIS 55 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv~~~~i~~~~~~ 55 (84)
.+.+-++|++|+..|+++..+++.....
T Consensus 24 ~~~VrlI~~~G~~lGv~~~~eAl~~A~~ 51 (182)
T CHL00199 24 FPKVRVIDDSGEQLGIFTSEQAIQLAAN 51 (182)
T ss_pred CCEEEEECCCCcCCCceeHHHHHHHHHH
Confidence 5567889999999999999888666543
No 219
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=46.66 E-value=17 Score=18.42 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=9.2
Q ss_pred EEcCCCcEEEEE
Q 047148 33 VIDKDGGVAACL 44 (84)
Q Consensus 33 Vvd~~g~l~Giv 44 (84)
=.|++|+++|+=
T Consensus 34 d~d~~G~ivGIE 45 (50)
T PF10049_consen 34 DYDEDGRIVGIE 45 (50)
T ss_pred EECCCCCEEEEE
Confidence 347889999984
No 220
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=45.67 E-value=26 Score=22.46 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=19.1
Q ss_pred CCEeEEEcCCCcEEEEEEHHHHHHHHH
Q 047148 28 FLHLPVIDKDGGVAACLDVLQITHAAI 54 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv~~~~i~~~~~ 54 (84)
.+.+-++|++|...|+++..+++....
T Consensus 7 ~~~Vrli~~dG~~lgv~~~~eAl~~A~ 33 (165)
T TIGR00168 7 FNEVRLIDENGEQLGIVSREEALEIAE 33 (165)
T ss_pred CCEEEEECCCCcCCCcccHHHHHHHHH
Confidence 445667788888888887777665543
No 221
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=44.48 E-value=22 Score=26.11 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.3
Q ss_pred CCCEeEEEcCCCcEEEEEEHHH
Q 047148 27 KFLHLPVIDKDGGVAACLDVLQ 48 (84)
Q Consensus 27 ~~~~ipVvd~~g~l~Giv~~~~ 48 (84)
++++++|-|++|++.|++...+
T Consensus 372 ~i~Y~av~de~ge~~g~le~~q 393 (409)
T COG2461 372 HIRYFAVKDEEGEYLGTLEVVQ 393 (409)
T ss_pred EEEEEEEEcCCCceeeeehhhh
Confidence 3788999999999999994443
No 222
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=43.75 E-value=24 Score=23.72 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=13.6
Q ss_pred EeEEEcCCCcEEEEE
Q 047148 30 HLPVIDKDGGVAACL 44 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv 44 (84)
.+|+.|..|+++|+=
T Consensus 61 mFPI~d~~G~vvgFg 75 (218)
T TIGR00646 61 NLPLYNFDGNLIGFL 75 (218)
T ss_pred EEEEECCCCCEEEEe
Confidence 469999999999987
No 223
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=43.16 E-value=59 Score=21.24 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=23.4
Q ss_pred CCCEeEEEcCCCcEEEEEEHHHHHHHHHh
Q 047148 27 KFLHLPVIDKDGGVAACLDVLQITHAAIS 55 (84)
Q Consensus 27 ~~~~ipVvd~~g~l~Giv~~~~i~~~~~~ 55 (84)
+.+.+-+++++|.-+|+++..+++.....
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e 45 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEE 45 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHH
Confidence 45667889999999999999988766543
No 224
>PHA00673 acetyltransferase domain containing protein
Probab=42.64 E-value=73 Score=20.19 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHhCCCCEeEEEcCCCcEEEEE
Q 047148 14 TTILDALHIMHDGKFLHLPVIDKDGGVAACL 44 (84)
Q Consensus 14 ~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv 44 (84)
.+-.++.+.+.+..-..+.|...+|+++|.+
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~ 70 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFA 70 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEE
Confidence 4455566777766666777776689999977
No 225
>PF00949 Peptidase_S7: Peptidase S7, Flavivirus NS3 serine protease ; InterPro: IPR001850 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature identifies serine peptidases belong to MEROPS peptidase family S7 (flavivirin family, clan PA(S)). The protein fold of the peptidase domain for members of this family resembles that of chymotrypsin, the type example for clan PA. Flaviviruses produce a polyprotein from the ssRNA genome. The N terminus of the NS3 protein (approx. 180 aa) is required for the processing of the polyprotein. NS3 also has conserved homology with NTP-binding proteins and DEAD family of RNA helicase [, , ].; GO: 0003723 RNA binding, 0003724 RNA helicase activity, 0005524 ATP binding; PDB: 2IJO_B 3E90_D 2GGV_B 2FP7_B 2WV9_A 3U1I_B 3U1J_B 2WZQ_A 2WHX_A 3L6P_A ....
Probab=41.63 E-value=28 Score=21.57 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=13.3
Q ss_pred CCEeEEEcCCCcEEEEE
Q 047148 28 FLHLPVIDKDGGVAACL 44 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv 44 (84)
-.-=||+|.+|+++|+.
T Consensus 98 sSGSpi~n~~g~ivGlY 114 (132)
T PF00949_consen 98 SSGSPIFNQNGEIVGLY 114 (132)
T ss_dssp GTT-EEEETTSCEEEEE
T ss_pred CCCCceEcCCCcEEEEE
Confidence 33458999999999987
No 226
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=41.40 E-value=53 Score=17.00 Aligned_cols=38 Identities=5% Similarity=0.114 Sum_probs=29.3
Q ss_pred eCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHH
Q 047148 11 TMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQI 49 (84)
Q Consensus 11 ~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i 49 (84)
....+..+.++...+.+++.+.+.|. +.+.|.....+.
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh-~~~~~~~~~~~~ 49 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDH-GNLFGAVEFYKA 49 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeC-CcccCHHHHHHH
Confidence 45678899999999999999999985 567776544444
No 227
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=41.28 E-value=29 Score=18.77 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.2
Q ss_pred CCEeEEEcCCCcEEEEE
Q 047148 28 FLHLPVIDKDGGVAACL 44 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv 44 (84)
+...|+.|++|++.|++
T Consensus 83 ~~~~Pi~~~~g~~~g~~ 99 (110)
T PF08448_consen 83 VSISPIFDEDGEVVGVL 99 (110)
T ss_dssp EEEEEEECTTTCEEEEE
T ss_pred EEEEEeEcCCCCEEEEE
Confidence 45679999999999988
No 228
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=40.58 E-value=26 Score=24.77 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=14.2
Q ss_pred CEeEEEcCCCcEEEEEE
Q 047148 29 LHLPVIDKDGGVAACLD 45 (84)
Q Consensus 29 ~~ipVvd~~g~l~Giv~ 45 (84)
.-=|++|.+|+++||.+
T Consensus 200 SGGpl~n~~G~vIGI~~ 216 (351)
T TIGR02038 200 SGGALINTNGELVGINT 216 (351)
T ss_pred CcceEECCCCeEEEEEe
Confidence 34589999999999974
No 229
>PRK10898 serine endoprotease; Provisional
Probab=38.05 E-value=31 Score=24.49 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=14.2
Q ss_pred CEeEEEcCCCcEEEEEE
Q 047148 29 LHLPVIDKDGGVAACLD 45 (84)
Q Consensus 29 ~~ipVvd~~g~l~Giv~ 45 (84)
.-=|++|.+|+++||.+
T Consensus 200 SGGPl~n~~G~vvGI~~ 216 (353)
T PRK10898 200 SGGALVNSLGELMGINT 216 (353)
T ss_pred CcceEECCCCeEEEEEE
Confidence 44589999999999974
No 230
>PRK10638 glutaredoxin 3; Provisional
Probab=37.00 E-value=72 Score=17.24 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=13.4
Q ss_pred HhCCCCEeEEEcCCCcEEEEE
Q 047148 24 HDGKFLHLPVIDKDGGVAACL 44 (84)
Q Consensus 24 ~~~~~~~ipVvd~~g~l~Giv 44 (84)
...+...+|++--+|+.+|=.
T Consensus 46 ~~~g~~~vP~i~~~g~~igG~ 66 (83)
T PRK10638 46 KRSGRTTVPQIFIDAQHIGGC 66 (83)
T ss_pred HHhCCCCcCEEEECCEEEeCH
Confidence 345667788885566666644
No 231
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed
Probab=36.92 E-value=14 Score=23.47 Aligned_cols=11 Identities=36% Similarity=0.295 Sum_probs=8.1
Q ss_pred hhHHHHHHHHh
Q 047148 70 CCFYHLAKALF 80 (84)
Q Consensus 70 ~~~~~~~~~~~ 80 (84)
.|.-||+++++
T Consensus 91 ~~iedl~~~i~ 101 (154)
T PRK06049 91 DSIEELAEALV 101 (154)
T ss_pred ccHHHHHHHHH
Confidence 37888888775
No 232
>PF14044 NETI: NETI protein
Probab=36.31 E-value=58 Score=17.32 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=18.9
Q ss_pred eeeCCCCHHHHHHHHHhCCCCEeEEE
Q 047148 9 CATMETTILDALHIMHDGKFLHLPVI 34 (84)
Q Consensus 9 ~v~~~~~l~~a~~~m~~~~~~~ipVv 34 (84)
.+.++.|+++.++.|.+.|. .||-
T Consensus 3 eV~enETI~~CL~RM~~eGY--~Pvr 26 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPVR 26 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Ccee
Confidence 46789999999999988764 5554
No 233
>PHA02986 hypothetical protein; Provisional
Probab=36.08 E-value=25 Score=21.78 Aligned_cols=15 Identities=47% Similarity=0.501 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHhhhc
Q 047148 69 TCCFYHLAKALFGIV 83 (84)
Q Consensus 69 ~~~~~~~~~~~~~~~ 83 (84)
+.|.+-|-|+|||++
T Consensus 127 ~ksi~il~kaLF~~~ 141 (141)
T PHA02986 127 RKSINILNKALFGID 141 (141)
T ss_pred hHHHHHHHHHHcCCC
Confidence 568899999999985
No 234
>PF09939 DUF2171: Uncharacterized protein conserved in bacteria (DUF2171); InterPro: IPR018684 This family of various hypothetical prokaryotic proteins has no known function.
Probab=35.92 E-value=43 Score=18.38 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.0
Q ss_pred CEeEEEcCCCcEEEEEEH
Q 047148 29 LHLPVIDKDGGVAACLDV 46 (84)
Q Consensus 29 ~~ipVvd~~g~l~Giv~~ 46 (84)
.+++|+..+|.-+|.++-
T Consensus 4 ehmeVi~sdG~~vGtVDh 21 (67)
T PF09939_consen 4 EHMEVIGSDGVHVGTVDH 21 (67)
T ss_pred CCCEEEeCCCCEEEEEee
Confidence 358899999999999943
No 235
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=35.09 E-value=41 Score=17.74 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=12.5
Q ss_pred EeEEEcCCCcEEEEEEH
Q 047148 30 HLPVIDKDGGVAACLDV 46 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv~~ 46 (84)
.+.+.+++++++|++..
T Consensus 4 ~~~~~~~~~~ivG~~~~ 20 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRL 20 (79)
T ss_dssp EEEEEEETTEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEE
Confidence 45566678999999844
No 236
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=34.44 E-value=44 Score=25.45 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=18.3
Q ss_pred HHhCCCCEeEEEcCCCcEEEEEE
Q 047148 23 MHDGKFLHLPVIDKDGGVAACLD 45 (84)
Q Consensus 23 m~~~~~~~ipVvd~~g~l~Giv~ 45 (84)
+........||.|++|+++|+++
T Consensus 140 ~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 140 LHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ccCceEEeeEEEcCCCCEEEEEE
Confidence 33445667899999999999995
No 237
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=33.63 E-value=89 Score=20.34 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=13.8
Q ss_pred eEEEcCCCcEEEEEEHHHH
Q 047148 31 LPVIDKDGGVAACLDVLQI 49 (84)
Q Consensus 31 ipVvd~~g~l~Giv~~~~i 49 (84)
+.|++.+|++.|+-...+.
T Consensus 38 vyIis~kGkiLGy~~~~~~ 56 (177)
T PF06018_consen 38 VYIISRKGKILGYSFIDDF 56 (177)
T ss_dssp EEEEETTSBEEEEE-SS--
T ss_pred EEEEeCCccEEEEeccCCC
Confidence 7789999999999844433
No 238
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=33.28 E-value=1.1e+02 Score=18.08 Aligned_cols=33 Identities=18% Similarity=-0.003 Sum_probs=18.6
Q ss_pred CHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHH
Q 047148 15 TILDALHIMHDGKFLHLPVIDKDGGVAACLDVL 47 (84)
Q Consensus 15 ~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~ 47 (84)
+..+....+.+..-....+...+|+++|++.+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~ 69 (162)
T PRK10140 37 SDHMWQERLADRPGIKQLVACIDGDVVGHLTID 69 (162)
T ss_pred CHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEe
Confidence 444444544432222334555578999999654
No 239
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=32.06 E-value=49 Score=17.53 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=11.7
Q ss_pred CCEeEEEcCCCcEEEEE
Q 047148 28 FLHLPVIDKDGGVAACL 44 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv 44 (84)
++..|+.+++|++.|++
T Consensus 80 ~~~~~i~~~~g~~~~~i 96 (104)
T PF13426_consen 80 VSASPIRDEDGEITGII 96 (104)
T ss_dssp EEEEEEEETTSSEEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 34457777778777776
No 240
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=30.46 E-value=42 Score=25.66 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=15.1
Q ss_pred eEEEcCCCcEEEEEEHHH
Q 047148 31 LPVIDKDGGVAACLDVLQ 48 (84)
Q Consensus 31 ipVvd~~g~l~Giv~~~~ 48 (84)
.||.|++|+.+|.|++.-
T Consensus 143 ~PI~d~~g~~IGvVsVG~ 160 (537)
T COG3290 143 VPIFDEDGKQIGVVSVGY 160 (537)
T ss_pred cceECCCCCEEEEEEEee
Confidence 799999999999994443
No 241
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=30.41 E-value=60 Score=20.04 Aligned_cols=20 Identities=5% Similarity=0.185 Sum_probs=15.5
Q ss_pred eEEEcCCCcEEEEEEHHHHH
Q 047148 31 LPVIDKDGGVAACLDVLQIT 50 (84)
Q Consensus 31 ipVvd~~g~l~Giv~~~~i~ 50 (84)
++|+|++|+.+|........
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~ 20 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVH 20 (158)
T ss_pred CEEECCCCCEeeeeeHHHhh
Confidence 46889999999988666653
No 242
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=30.27 E-value=81 Score=17.47 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=24.9
Q ss_pred EHHHHHHHHHhhhhhhhhccc---cchhhhHHHHHHHHh
Q 047148 45 DVLQITHAAISMCYEWHYCNE---RDLTCCFYHLAKALF 80 (84)
Q Consensus 45 ~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 80 (84)
++..++....++++..-...+ .++.-|-++||++|.
T Consensus 5 SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLY 43 (70)
T PF08606_consen 5 SIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALY 43 (70)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677776544444 778888999999885
No 243
>PF07057 TraI: DNA helicase TraI; InterPro: IPR009767 This entry represents a conserved region approximately 130 residues long within the bacterial DNA helicase TraI. TraI is a bifunctional protein that catalyses the unwinding of duplex DNA as well as acts as a sequence-specific DNA trans-esterase, providing the site- and strand-specific nick required to initiate DNA transfer [].; GO: 0003677 DNA binding, 0003678 DNA helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0000746 conjugation; PDB: 3FLD_B.
Probab=29.60 E-value=63 Score=19.98 Aligned_cols=15 Identities=40% Similarity=0.652 Sum_probs=11.6
Q ss_pred EeEEEcCCCcEEEEE
Q 047148 30 HLPVIDKDGGVAACL 44 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv 44 (84)
.+||.|.+|+-.|+.
T Consensus 95 ALPv~D~NGK~AGv~ 109 (126)
T PF07057_consen 95 ALPVYDRNGKQAGVW 109 (126)
T ss_dssp EEEEE-TTS-EEEEE
T ss_pred eceeecCCCceeeeE
Confidence 579999999999987
No 244
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=28.92 E-value=62 Score=18.58 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=17.9
Q ss_pred HHHHhCCCCE---eEEEcCCCcEEEEEEHHH
Q 047148 21 HIMHDGKFLH---LPVIDKDGGVAACLDVLQ 48 (84)
Q Consensus 21 ~~m~~~~~~~---ipVvd~~g~l~Giv~~~~ 48 (84)
....+.+++. +|+.. +|+++|++.+..
T Consensus 93 ~~~~~~~~~s~l~vPl~~-~~~~~Gvl~l~~ 122 (148)
T PF13185_consen 93 ELARHPGIRSILCVPLRS-GGEVIGVLSLYS 122 (148)
T ss_dssp HHHCCTT-SEEEEEEEEE-TTEEEEEEEEEE
T ss_pred hhhccccCCEEEEEEEeE-CCEEEEEEEEee
Confidence 4445555555 79997 579999994443
No 245
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=28.21 E-value=74 Score=21.36 Aligned_cols=47 Identities=21% Similarity=0.138 Sum_probs=27.6
Q ss_pred EeEEEcCCCcEEEEEEHHHHHHHHHhhhhhhhhccccchhhhHHHHHHHH
Q 047148 30 HLPVIDKDGGVAACLDVLQITHAAISMCYEWHYCNERDLTCCFYHLAKAL 79 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (84)
..||.|.+|+++|-|++.-...... +.....-...+..+-..+|+.+
T Consensus 198 AaPi~~~~g~v~aaisv~~p~~r~~---~~~~~~~~~~l~~~a~~is~~l 244 (246)
T COG1414 198 AAPIFDAGGEVVAAISVSGPASRLT---EERLEELGPLLREAARRISRAL 244 (246)
T ss_pred EEEEECCCCCEEEEEEEeechhhcC---HHHHHHHHHHHHHHHHHHHHHh
Confidence 4599999999999996655433322 2222222345556666666554
No 246
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=27.16 E-value=1.1e+02 Score=19.31 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=17.6
Q ss_pred CCEeEEEcCCCcEEEEEEHHHHH
Q 047148 28 FLHLPVIDKDGGVAACLDVLQIT 50 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv~~~~i~ 50 (84)
...+.|+|++|+.+|..+.....
T Consensus 9 ~e~~~~~d~~~~~~g~~~~~~~~ 31 (180)
T PRK15393 9 TEWVDIVNENNEVIAQASREQMR 31 (180)
T ss_pred ceEEEEECCCCCEeeEEEHHHHh
Confidence 45588999999999998655543
No 247
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=26.86 E-value=86 Score=18.79 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=14.2
Q ss_pred CCEeEEEcCCCcEEEEE
Q 047148 28 FLHLPVIDKDGGVAACL 44 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv 44 (84)
...+++-|++|+++|++
T Consensus 84 SsT~~Ird~~g~~iG~L 100 (118)
T PF08348_consen 84 SSTFFIRDENGKLIGAL 100 (118)
T ss_pred EEEEEEECCCCCEEEEE
Confidence 45678889889999999
No 248
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=26.67 E-value=64 Score=21.03 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=13.8
Q ss_pred EeEEEcCCCcEEEEEEHHH
Q 047148 30 HLPVIDKDGGVAACLDVLQ 48 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv~~~~ 48 (84)
.+..++++++++|+|+++-
T Consensus 70 ~y~~v~~d~~ivG~i~lRh 88 (174)
T COG3981 70 TYWAVDEDGQIVGFINLRH 88 (174)
T ss_pred eEEEEecCCcEEEEEEeee
Confidence 3445666899999996654
No 249
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=26.56 E-value=86 Score=16.57 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=12.9
Q ss_pred EeEEEcCCCcEEEEE
Q 047148 30 HLPVIDKDGGVAACL 44 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv 44 (84)
..+|++.+|+.+|-|
T Consensus 11 g~~V~~~~G~~iG~V 25 (79)
T PF05239_consen 11 GKEVIDRDGEKIGKV 25 (79)
T ss_dssp TSEEEETTSCEEEEE
T ss_pred CCEEEcCCCCEEEEE
Confidence 468999889999988
No 250
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.53 E-value=99 Score=20.52 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=26.2
Q ss_pred eeeCCCCHHHHHHHHHhC---CCCEeEEEcCCCcEEEEE
Q 047148 9 CATMETTILDALHIMHDG---KFLHLPVIDKDGGVAACL 44 (84)
Q Consensus 9 ~v~~~~~l~~a~~~m~~~---~~~~ipVvd~~g~l~Giv 44 (84)
...++-.+.+....+... -.+...|+|.+|.+.-++
T Consensus 102 iaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~ 140 (194)
T COG0450 102 IADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHIL 140 (194)
T ss_pred EEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEE
Confidence 334455677777766522 478899999999998888
No 251
>PRK08624 hypothetical protein; Provisional
Probab=26.38 E-value=66 Score=23.47 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=13.8
Q ss_pred EeEEEcCCCcEEEEE
Q 047148 30 HLPVIDKDGGVAACL 44 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv 44 (84)
.+|+.|..|+++|+=
T Consensus 185 mFPI~d~~GrvIGFg 199 (373)
T PRK08624 185 IIPHRDESGELIGIR 199 (373)
T ss_pred EEEEECCCCCEEEEe
Confidence 689999999999987
No 252
>COG5428 Uncharacterized conserved small protein [Function unknown]
Probab=26.23 E-value=54 Score=18.14 Aligned_cols=16 Identities=31% Similarity=0.192 Sum_probs=12.4
Q ss_pred CEeEEEcCCCcEEEEE
Q 047148 29 LHLPVIDKDGGVAACL 44 (84)
Q Consensus 29 ~~ipVvd~~g~l~Giv 44 (84)
..+.=+|++|++.||=
T Consensus 31 di~Idide~GkV~GiE 46 (69)
T COG5428 31 DILIDIDENGKVIGIE 46 (69)
T ss_pred cEEEEecCCCcEEEEE
Confidence 3455578999999986
No 253
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=25.92 E-value=60 Score=23.48 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=13.1
Q ss_pred EeEEEcCCCcEEEEE
Q 047148 30 HLPVIDKDGGVAACL 44 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv 44 (84)
-=|++|.+|+++||.
T Consensus 182 GGpl~n~~G~viGI~ 196 (428)
T TIGR02037 182 GGPLVNLRGEVIGIN 196 (428)
T ss_pred CCceECCCCeEEEEE
Confidence 458999999999996
No 254
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=25.88 E-value=75 Score=19.68 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=14.8
Q ss_pred CCEeEEEcCCCcEEEEEEH
Q 047148 28 FLHLPVIDKDGGVAACLDV 46 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv~~ 46 (84)
...+||.++ |+++|++..
T Consensus 106 ~~~~PI~~~-~~vIaVl~~ 123 (145)
T PF12282_consen 106 QEVVPIRRN-GRVIAVLIR 123 (145)
T ss_dssp EEEEEEEET-TEEEEEEEE
T ss_pred EEEEEEEEC-CEEEEEEEE
Confidence 577999995 699999963
No 255
>PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents S46 peptidases, where dipeptidyl-peptidase 7 (DPP-7) is the best-characterised member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.
Probab=25.87 E-value=41 Score=26.48 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=16.9
Q ss_pred EeEEEcCCCcEEEEE---EHHHHHHH
Q 047148 30 HLPVIDKDGGVAACL---DVLQITHA 52 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv---~~~~i~~~ 52 (84)
-=||+|.+|+++|+. +.+.+...
T Consensus 636 GSPvlN~~GeLVGl~FDgn~Esl~~D 661 (698)
T PF10459_consen 636 GSPVLNAKGELVGLAFDGNWESLSGD 661 (698)
T ss_pred CCccCCCCceEEEEeecCchhhcccc
Confidence 358999999999999 44444333
No 256
>PRK03972 ribosomal biogenesis protein; Validated
Probab=25.60 E-value=1.8e+02 Score=19.53 Aligned_cols=35 Identities=23% Similarity=0.142 Sum_probs=27.4
Q ss_pred eeCCCCHHHHHHHHHhCCCCEeEEEcCC-CcEEEEE
Q 047148 10 ATMETTILDALHIMHDGKFLHLPVIDKD-GGVAACL 44 (84)
Q Consensus 10 v~~~~~l~~a~~~m~~~~~~~ipVvd~~-g~l~Giv 44 (84)
-....++.+..+.-.+++...+.|++++ |++-|++
T Consensus 32 ~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~ 67 (208)
T PRK03972 32 TRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMT 67 (208)
T ss_pred ecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEE
Confidence 3456789999988888899999999764 5666666
No 257
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal. This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.
Probab=25.47 E-value=29 Score=21.97 Aligned_cols=12 Identities=42% Similarity=0.252 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHh
Q 047148 69 TCCFYHLAKALF 80 (84)
Q Consensus 69 ~~~~~~~~~~~~ 80 (84)
..|.-||+|+++
T Consensus 88 ~~~iedl~~~i~ 99 (152)
T TIGR01309 88 YESVDELAKALV 99 (152)
T ss_pred CccHHHHHHHHH
Confidence 458888888875
No 258
>PRK10139 serine endoprotease; Provisional
Probab=24.44 E-value=70 Score=23.63 Aligned_cols=18 Identities=6% Similarity=-0.008 Sum_probs=14.6
Q ss_pred CCEeEEEcCCCcEEEEEE
Q 047148 28 FLHLPVIDKDGGVAACLD 45 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv~ 45 (84)
-.-=|++|.+|+++||.+
T Consensus 213 nSGGpl~n~~G~vIGi~~ 230 (455)
T PRK10139 213 NSGGALLNLNGELIGINT 230 (455)
T ss_pred CCcceEECCCCeEEEEEE
Confidence 344689999999999984
No 259
>PF09157 TruB-C_2: Pseudouridine synthase II TruB, C-terminal; InterPro: IPR015240 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1ZL3_A 1K8W_A 1R3F_A.
Probab=24.10 E-value=74 Score=16.14 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=12.7
Q ss_pred EeEEEcCCCcEEEEEEHH
Q 047148 30 HLPVIDKDGGVAACLDVL 47 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv~~~ 47 (84)
.+=|.+++|+++|+-...
T Consensus 30 ~vrvy~~~~~FlGig~~~ 47 (58)
T PF09157_consen 30 LVRVYDEDGRFLGIGEID 47 (58)
T ss_dssp EEEEETTTTEEEEEEEE-
T ss_pred eEEEECCCCEEEEEEEEc
Confidence 455668899999987443
No 260
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=23.93 E-value=1e+02 Score=17.98 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=11.2
Q ss_pred EeEEEcCCCcEEEEE
Q 047148 30 HLPVIDKDGGVAACL 44 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv 44 (84)
...|+|++|+++++.
T Consensus 126 ~~~lid~~G~i~~~~ 140 (142)
T cd02968 126 AIYLVDPDGKLVRYY 140 (142)
T ss_pred eEEEECCCCCEEEee
Confidence 467788888887765
No 261
>PF06297 PET: PET Domain; InterPro: IPR010442 The PET domain is a ~110 amino acid motif in the N-terminal part of LIM domain proteins. The domain was described in Drosophila proteins involved in cell differentiation and is named after Prickle, Espinas and Testin. PET domain proteins contain about three zinc-binding LIM domains (see PDOC00382 from INTERPRO, IPR001781 from INTERPRO) and are found among metazoans. The PET domain has been suggested to play a role in protein-protein interactions with proteins involved in planar polarity signalling or organisation of the cytoskeleton []. Some proteins known to contain a PET domain: Mammalian testin protein (Q9UGI8 from SWISSPROT), which may function as a tumour suppressor. Mammalian LIM domain only protein 6 (LMO6/Prickle3, O43900 from SWISSPROT). Fruit fly prickle (A1Z6W3 from SWISSPROT) and espinas (Q9U1I1 from SWISSPROT) proteins encoded by the tissue polarity gene prickle (pk), involved in the control of orientation of bristles and hairs. Mammalian prickle-like proteins 1 (Q96MT3 from SWISSPROT) and 2 (Q7Z3G6 from SWISSPROT). ; GO: 0008270 zinc ion binding
Probab=23.74 E-value=72 Score=19.03 Aligned_cols=34 Identities=12% Similarity=-0.069 Sum_probs=28.3
Q ss_pred CCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCc
Q 047148 6 SPECATMETTILDALHIMHDGKFLHLPVIDKDGG 39 (84)
Q Consensus 6 ~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~ 39 (84)
.+..+++..+...+..+|..---+.+|+++..|.
T Consensus 20 ~Y~WvPpgl~~~~v~~Ym~~LP~~~vP~~gS~Ge 53 (106)
T PF06297_consen 20 EYAWVPPGLSPELVEQYMSCLPEEKVPVVGSPGE 53 (106)
T ss_pred eeeecCCCCChHHHHHHHHhCCCcCCCCCCCHHH
Confidence 4557889999999999998777778999988764
No 262
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=23.66 E-value=55 Score=25.41 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=18.3
Q ss_pred CCCCEeEEEcCCCcEEEEEEHH
Q 047148 26 GKFLHLPVIDKDGGVAACLDVL 47 (84)
Q Consensus 26 ~~~~~ipVvd~~g~l~Giv~~~ 47 (84)
......||-|++|++.|++++.
T Consensus 158 lsCsAaPI~D~qG~L~gVLDIS 179 (606)
T COG3284 158 LSCSAAPIFDEQGELVGVLDIS 179 (606)
T ss_pred ceeeeeccccCCCcEEEEEEec
Confidence 3466789999999999999655
No 263
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=23.63 E-value=2.1e+02 Score=22.59 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh-hhhhhhccccchh
Q 047148 16 ILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM-CYEWHYCNERDLT 69 (84)
Q Consensus 16 l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~-~~~~~~~~~~~~~ 69 (84)
+.+..+.+.+.+.+.+.|-. +++++|++.+.|..+....+ +.+.+....+-+|
T Consensus 414 ~~~~~~~~a~~G~r~l~va~-~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~m 467 (675)
T TIGR01497 414 LDQAVDQVARQGGTPLVVCE-DNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIM 467 (675)
T ss_pred HHHHHHHHHhCCCeEEEEEE-CCEEEEEEEecccchhHHHHHHHHHHHCCCEEEE
Confidence 34555566677777777665 57999999888876666544 5555555443333
No 264
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=23.32 E-value=1.4e+02 Score=23.37 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh-hhhhhhccccchhhh
Q 047148 16 ILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM-CYEWHYCNERDLTCC 71 (84)
Q Consensus 16 l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~-~~~~~~~~~~~~~~~ 71 (84)
+.+..+.+.+.+.+.+.+.. +++++|++.+.|..+....+ +...+....+-+|.+
T Consensus 409 ~~~~~~~~a~~G~~~l~v~~-~~~~lG~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiT 464 (673)
T PRK14010 409 LDALVKGVSKKGGTPLVVLE-DNEILGVIYLKDVIKDGLVERFRELREMGIETVMCT 464 (673)
T ss_pred HHHHHHHHHhCCCeEEEEEE-CCEEEEEEEeecCCcHHHHHHHHHHHHCCCeEEEEC
Confidence 44555566667777676654 68999999888876665443 555555555444443
No 265
>PHA02540 61 DNA primase; Provisional
Probab=22.82 E-value=86 Score=22.50 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=14.4
Q ss_pred CCEeEEEcCCCcEEEEE
Q 047148 28 FLHLPVIDKDGGVAACL 44 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv 44 (84)
-=.+||.|.+|+++|+=
T Consensus 173 RImFPI~d~~G~vigFg 189 (337)
T PHA02540 173 RLVIPIFNKDGKIESFQ 189 (337)
T ss_pred eeEEEEECCCCCEEEEE
Confidence 34689999999999986
No 266
>PF09308 LuxQ-periplasm: LuxQ, periplasmic; InterPro: IPR015387 This entry represents the periplasmic sensor domain of the prokaryotic protein LuxQ, that assumes a structure consisting of two tandem Per/ARNT/Simple-minded (PAS) folds []. ; GO: 0004673 protein histidine kinase activity, 0016791 phosphatase activity; PDB: 2HJ9_C 2HJE_A 1ZHH_B 3C30_A 3C38_A.
Probab=22.56 E-value=82 Score=21.53 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=12.8
Q ss_pred CCEeEEEcCC-CcEEEEE
Q 047148 28 FLHLPVIDKD-GGVAACL 44 (84)
Q Consensus 28 ~~~ipVvd~~-g~l~Giv 44 (84)
++..||++.. |+++|.+
T Consensus 129 vRR~pIi~~~tGEVlG~L 146 (238)
T PF09308_consen 129 VRRTPIIDPKTGEVLGYL 146 (238)
T ss_dssp EEEEEEE-TTTSBEEEEE
T ss_pred EeecceeeCCCCeEEEEE
Confidence 4678999844 8999988
No 267
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=22.27 E-value=1.3e+02 Score=20.55 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=17.8
Q ss_pred CEeEEEcCCCcEEEEEEHHHH
Q 047148 29 LHLPVIDKDGGVAACLDVLQI 49 (84)
Q Consensus 29 ~~ipVvd~~g~l~Giv~~~~i 49 (84)
..+.++|++++++|..+....
T Consensus 23 e~v~lvDe~d~~~G~~~r~~~ 43 (247)
T PLN02552 23 DECILVDENDNVVGHDSKYNC 43 (247)
T ss_pred CeEEEEcCCCCEEeeeEHhhh
Confidence 458899999999999987654
No 268
>KOG1930 consensus Focal adhesion protein Tensin, contains PTB domain [Signal transduction mechanisms; Cytoskeleton]
Probab=22.16 E-value=1.4e+02 Score=22.43 Aligned_cols=36 Identities=11% Similarity=0.018 Sum_probs=28.8
Q ss_pred eeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEE
Q 047148 8 ECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACL 44 (84)
Q Consensus 8 ~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv 44 (84)
...+++.+.++|+.++++..-..+.|-|. .-+.|-.
T Consensus 213 yWYKP~isREQAIalLrdkePGtFvvRDS-~SfrGay 248 (483)
T KOG1930|consen 213 YWYKPNISREQAIALLRDKEPGTFVVRDS-HSFRGAY 248 (483)
T ss_pred cccCCCCCHHHHHHHhhcCCCCeEEEecC-CcCCCcc
Confidence 46789999999999999998888988875 4555543
No 269
>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=22.05 E-value=1e+02 Score=18.16 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=12.5
Q ss_pred eEEEcCCCcEEEEE
Q 047148 31 LPVIDKDGGVAACL 44 (84)
Q Consensus 31 ipVvd~~g~l~Giv 44 (84)
.||+|++++-+|.|
T Consensus 29 ~~V~~~~~k~IG~V 42 (98)
T COG3277 29 APVYDANLKRIGKV 42 (98)
T ss_pred CeeEecCCCEEEEE
Confidence 58999999999998
No 270
>COG3798 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=75 Score=17.72 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=15.2
Q ss_pred CEeEEEcCCCcEEEEEEHH
Q 047148 29 LHLPVIDKDGGVAACLDVL 47 (84)
Q Consensus 29 ~~ipVvd~~g~l~Giv~~~ 47 (84)
.+++|++.+|+=+|-++-.
T Consensus 9 EhmeVv~aDG~hvGtVDh~ 27 (75)
T COG3798 9 EHMEVVGADGKHVGTVDHL 27 (75)
T ss_pred hcceeecCCCcEeccEeec
Confidence 3589999999999998433
No 271
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=21.72 E-value=87 Score=18.37 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=15.7
Q ss_pred CCEeEEEcCCCcEEEEEEH
Q 047148 28 FLHLPVIDKDGGVAACLDV 46 (84)
Q Consensus 28 ~~~ipVvd~~g~l~Giv~~ 46 (84)
.+.+|+.|++|+.+|-|++
T Consensus 81 k~~f~L~~~~~~~~G~I~l 99 (112)
T PF14924_consen 81 KGTFPLFDENGNPVGEISL 99 (112)
T ss_pred cceeEeecCCCceeeeEEE
Confidence 5678999999999998853
No 272
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=21.58 E-value=1.5e+02 Score=15.94 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=10.9
Q ss_pred HHHHHHhCCCCEeEEEcCCCc
Q 047148 19 ALHIMHDGKFLHLPVIDKDGG 39 (84)
Q Consensus 19 a~~~m~~~~~~~ipVvd~~g~ 39 (84)
..+...-.++..+.++|.+|+
T Consensus 74 l~~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 74 LLKKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp HHHHTT-TSSSEEEEEETTSB
T ss_pred HHHHCCCCcCCEEEEECCCCC
Confidence 333333345666666676665
No 273
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=21.20 E-value=32 Score=20.89 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=26.8
Q ss_pred CEeEEEcCCCcEEEEE--EHHHHHHHHHhhhhh-hhhccccchhhhHHHHHH
Q 047148 29 LHLPVIDKDGGVAACL--DVLQITHAAISMCYE-WHYCNERDLTCCFYHLAK 77 (84)
Q Consensus 29 ~~ipVvd~~g~l~Giv--~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (84)
..+.|+.++..++|++ -..++-...-.++-. .+.-..++++.||+++..
T Consensus 8 ~liavIgDEDT~tGfLlaGvg~v~~~r~~Nf~vv~~~Tt~~eiedaF~~f~~ 59 (121)
T KOG3432|consen 8 TLIAVIGDEDTVTGFLLAGVGEVNENREPNFLVVDSKTTVEEIEDAFKSFTA 59 (121)
T ss_pred cEEEEeccccceeeeeeecccccccCCCCCEEEEeccCCHHHHHHHHHhhcc
Confidence 4466777677888888 222222111111111 133444889999988653
No 274
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=21.09 E-value=1.8e+02 Score=16.74 Aligned_cols=15 Identities=0% Similarity=-0.113 Sum_probs=8.1
Q ss_pred CHHHHHHHHHhCCCC
Q 047148 15 TILDALHIMHDGKFL 29 (84)
Q Consensus 15 ~l~~a~~~m~~~~~~ 29 (84)
+.+++.+.+.++++.
T Consensus 72 ~~~~~~~~~~~~~~~ 86 (126)
T cd03012 72 DLANVKSAVLRYGIT 86 (126)
T ss_pred CHHHHHHHHHHcCCC
Confidence 455555555555554
No 275
>PF02578 Cu-oxidase_4: Multi-copper polyphenol oxidoreductase laccase; InterPro: IPR003730 Laccases are multi-copper oxidoreductases able to oxidise a wide variety of phenolic and non-phenolic compounds and are widely distributed among both prokaryotes and eukaryotes. There are two main active catalytic sites with conserved histidines that are capable of binding four copper atoms [].; PDB: 1XFJ_A 1RV9_A 1T8H_A 1RW0_B 1U05_B 1XAF_B 1Z9T_A.
Probab=21.05 E-value=1.1e+02 Score=20.35 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=18.8
Q ss_pred CCEeEEE--cCCCcEEEEE------EHHHHHHHHHhhh
Q 047148 28 FLHLPVI--DKDGGVAACL------DVLQITHAAISMC 57 (84)
Q Consensus 28 ~~~ipVv--d~~g~l~Giv------~~~~i~~~~~~~~ 57 (84)
.+++||+ |++++++|.+ +...+........
T Consensus 90 ADCvPvll~d~~~~~va~~HaGwrGt~~~I~~~~i~~m 127 (234)
T PF02578_consen 90 ADCVPVLLYDPKKGVVAAVHAGWRGTVKGIVKKTIKKM 127 (234)
T ss_dssp SSSEEEEEEETTSSEEEEEEE-HHHHHHTHHHHHHHHH
T ss_pred CCccceEEEeCCCCEEEEEccCcHHHHhhHHHHHHHHh
Confidence 4567766 7777899999 4444555544433
No 276
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=20.96 E-value=1.9e+02 Score=16.74 Aligned_cols=32 Identities=6% Similarity=-0.023 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHhCC--CCEeEEEcCCCcEEEE
Q 047148 12 METTILDALHIMHDGK--FLHLPVIDKDGGVAAC 43 (84)
Q Consensus 12 ~~~~l~~a~~~m~~~~--~~~ipVvd~~g~l~Gi 43 (84)
.+.+..++++.|.++. ++.-.|+++++-++|+
T Consensus 70 ~~~s~~e~~~~l~~~p~LikRPIi~~~~~~~iGf 103 (105)
T cd03035 70 AALDAAKAIALMLEHPSLIKRPVLETGGKVLVGF 103 (105)
T ss_pred ccCCHHHHHHHHHhCcCeeecceEEeCCEEEEee
Confidence 3456788899888764 2222344544455664
No 277
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=20.93 E-value=1.5e+02 Score=16.66 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=9.1
Q ss_pred EEcCCCcEEEE
Q 047148 33 VIDKDGGVAAC 43 (84)
Q Consensus 33 Vvd~~g~l~Gi 43 (84)
..|++|+++|.
T Consensus 66 EyD~~GrIVG~ 76 (77)
T PF12324_consen 66 EYDDQGRIVGY 76 (77)
T ss_dssp EEETTSEEEES
T ss_pred eEcCCCCeecC
Confidence 57889999983
No 278
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=20.76 E-value=1.7e+02 Score=19.19 Aligned_cols=14 Identities=14% Similarity=0.340 Sum_probs=11.3
Q ss_pred eEEEcCCCcEEEEE
Q 047148 31 LPVIDKDGGVAACL 44 (84)
Q Consensus 31 ipVvd~~g~l~Giv 44 (84)
+.-.|++|+++|++
T Consensus 44 yVA~D~~gkiVGYv 57 (193)
T KOG3235|consen 44 YVAEDENGKIVGYV 57 (193)
T ss_pred EEEEcCCCcEEEEe
Confidence 44567899999999
No 279
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=20.75 E-value=1.5e+02 Score=15.75 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=12.8
Q ss_pred EeEEEcCCCcEEEEEE
Q 047148 30 HLPVIDKDGGVAACLD 45 (84)
Q Consensus 30 ~ipVvd~~g~l~Giv~ 45 (84)
.+-|+|++|+++|.+.
T Consensus 47 rV~V~~~~G~~l~~~~ 62 (66)
T PF11141_consen 47 RVEVVDEDGQVLGSLR 62 (66)
T ss_pred EEEEEcCCCCEEEEEE
Confidence 4668899999999874
No 280
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=20.56 E-value=85 Score=19.88 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=13.5
Q ss_pred CEeEEEcCCCcEEEEEEHHHH
Q 047148 29 LHLPVIDKDGGVAACLDVLQI 49 (84)
Q Consensus 29 ~~ipVvd~~g~l~Giv~~~~i 49 (84)
..+.++|++|+++|..+....
T Consensus 6 E~~~~vd~~~~~~g~~~r~~~ 26 (184)
T PRK03759 6 ELVVLLDEQGVPTGTAEKAAA 26 (184)
T ss_pred eeEEEECCCCCCcccccHHHH
Confidence 346677777777776655554
No 281
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=20.54 E-value=1.8e+02 Score=22.96 Aligned_cols=52 Identities=15% Similarity=0.065 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhh-hhhhhhccccchh
Q 047148 17 LDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISM-CYEWHYCNERDLT 69 (84)
Q Consensus 17 ~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~-~~~~~~~~~~~~~ 69 (84)
.+..+.+.+.+.+.+.|-. +++++|++.+.|..+....+ +...+....+=+|
T Consensus 414 ~~~~~~~a~~G~~~l~va~-~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvM 466 (679)
T PRK01122 414 DAAVDEVARKGGTPLVVAE-DNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVM 466 (679)
T ss_pred HHHHHHHHhCCCcEEEEEE-CCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEE
Confidence 3444556667777776665 68999999888876655433 5555555544333
No 282
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=20.40 E-value=38 Score=24.23 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=34.9
Q ss_pred CCCCCCeeeeCCCCHHHHHHHHHhCCCCEeEEEcCCCcEEEEEEHHHHHHHHHhhhhh
Q 047148 2 VMTSSPECATMETTILDALHIMHDGKFLHLPVIDKDGGVAACLDVLQITHAAISMCYE 59 (84)
Q Consensus 2 vm~~~~~~v~~~~~l~~a~~~m~~~~~~~ipVvd~~g~l~Giv~~~~i~~~~~~~~~~ 59 (84)
||+.||.+.--..-+++|. .++..-++.||.++..+.-+=++.++........++
T Consensus 151 VMNANPFTLGH~YLVEqAa---aqcDwlHLFvV~eD~S~f~y~~R~~Lv~~G~~~l~N 205 (352)
T COG3053 151 VMNANPFTLGHRYLVEQAA---AQCDWLHLFVVKEDSSLFPYEDRLDLVKKGTADLPN 205 (352)
T ss_pred EEeCCCccchhHHHHHHHH---hhCCEEEEEEEecccccCCHHHHHHHHHHhhccCCc
Confidence 4777777766555566665 345566677777777766666777766665544443
No 283
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=20.20 E-value=2e+02 Score=16.82 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=20.1
Q ss_pred HHHHHHHHH-hCCCCEeEEEcCCCcEEEEEEHHHH
Q 047148 16 ILDALHIMH-DGKFLHLPVIDKDGGVAACLDVLQI 49 (84)
Q Consensus 16 l~~a~~~m~-~~~~~~ipVvd~~g~l~Giv~~~~i 49 (84)
..+.++.+. +.+-..+.|.+++|+++|++.....
T Consensus 37 ~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~ 71 (155)
T PF13420_consen 37 FERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDI 71 (155)
T ss_dssp HHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEES
T ss_pred HHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEee
Confidence 344444442 2334455555558999999966644
Done!