BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047150
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B7F|A Chain A, Crystal Structure Of Human T-Cell Leukemia Virus Protease,
A Novel Target For Anti-Cancer Design
pdb|2B7F|B Chain B, Crystal Structure Of Human T-Cell Leukemia Virus Protease,
A Novel Target For Anti-Cancer Design
pdb|2B7F|C Chain C, Crystal Structure Of Human T-Cell Leukemia Virus Protease,
A Novel Target For Anti-Cancer Design
pdb|2B7F|D Chain D, Crystal Structure Of Human T-Cell Leukemia Virus Protease,
A Novel Target For Anti-Cancer Design
pdb|2B7F|E Chain E, Crystal Structure Of Human T-Cell Leukemia Virus Protease,
A Novel Target For Anti-Cancer Design
pdb|2B7F|F Chain F, Crystal Structure Of Human T-Cell Leukemia Virus Protease,
A Novel Target For Anti-Cancer Design
pdb|3LIN|A Chain A, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10562
pdb|3LIN|B Chain B, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10562
pdb|3LIN|C Chain C, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10562
pdb|3LIN|D Chain D, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10562
pdb|3LIN|E Chain E, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10562
pdb|3LIN|F Chain F, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10562
pdb|3LIN|G Chain G, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10562
pdb|3LIN|H Chain H, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10562
pdb|3LIN|I Chain I, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10562
pdb|3LIN|J Chain J, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10562
pdb|3LIN|K Chain K, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10562
pdb|3LIN|L Chain L, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10562
pdb|3LIQ|A Chain A, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10673
pdb|3LIQ|B Chain B, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor, Kni- 10673
pdb|3LIT|A Chain A, The Crystal Structure Of Htlv Protease Complexed With The
Inhibitor Kni-10681
pdb|3LIT|B Chain B, The Crystal Structure Of Htlv Protease Complexed With The
Inhibitor Kni-10681
pdb|3LIV|A Chain A, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor Kni- 10683
pdb|3LIV|B Chain B, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor Kni- 10683
pdb|3LIX|A Chain A, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor Kni- 10729
pdb|3LIX|B Chain B, Crystal Structure Of Htlv Protease Complexed With The
Inhibitor Kni- 10729
pdb|3LIY|A Chain A, Crystal Structure Of Htlv Protease Complexed With
Statine-containing Peptide Inhibitor
pdb|3LIY|B Chain B, Crystal Structure Of Htlv Protease Complexed With
Statine-containing Peptide Inhibitor
pdb|3LIY|C Chain C, Crystal Structure Of Htlv Protease Complexed With
Statine-containing Peptide Inhibitor
pdb|3LIY|D Chain D, Crystal Structure Of Htlv Protease Complexed With
Statine-containing Peptide Inhibitor
pdb|3LIY|E Chain E, Crystal Structure Of Htlv Protease Complexed With
Statine-containing Peptide Inhibitor
pdb|3LIY|F Chain F, Crystal Structure Of Htlv Protease Complexed With
Statine-containing Peptide Inhibitor
Length = 116
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 18/89 (20%)
Query: 84 PVIDMSFGRLPI-------ASSHGPKLYAASHDS---------SLFRLYVGTRNKPMYGA 127
PVI + R P+ +SH PK A D+ +LF +N + GA
Sbjct: 1 PVIPLDPARRPVIKAQVDTQTSH-PKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGA 59
Query: 128 GRNMQDLLELGKGLPLIIRMSFRTNYRVV 156
G QD +L LP++IR+ FRT V+
Sbjct: 60 GGQTQDHFKL-TSLPVLIRLPFRTTPIVL 87
>pdb|2PAH|A Chain A, Tetrameric Human Phenylalanine Hydroxylase
pdb|2PAH|B Chain B, Tetrameric Human Phenylalanine Hydroxylase
Length = 335
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 24/65 (36%)
Query: 89 SFGRLPIASSHGPKLYAASHDSSLFRLYVGTRNKPMYGAGRNMQDLLELGKGLPLIIRMS 148
SFG L S PKL + + + Y T +P+Y + D E + I
Sbjct: 233 SFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRP 292
Query: 149 FRTNY 153
F Y
Sbjct: 293 FSVRY 297
>pdb|4ANP|A Chain A, Crystal Structure Of Human Phenylalanine Hydroxylase In
Complex With A Pharmacological Chaperone
Length = 324
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 24/65 (36%)
Query: 89 SFGRLPIASSHGPKLYAASHDSSLFRLYVGTRNKPMYGAGRNMQDLLELGKGLPLIIRMS 148
SFG L S PKL + + + Y T +P+Y + D E + I
Sbjct: 247 SFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRP 306
Query: 149 FRTNY 153
F Y
Sbjct: 307 FSVRY 311
>pdb|1J8T|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase Fe(Ii)
pdb|1J8U|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase Fe(ii)
In Complex With Tetrahydrobiopterin
pdb|1LRM|A Chain A, Crystal Structure Of Binary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase With
Dihydrobiopterin (Bh2)
pdb|1KW0|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase
(Fe(Ii) ) In Complex With Tetrahydrobiopterin And
Thienylalanine
pdb|1MMK|A Chain A, Crystal Structure Of Ternary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase ((Feii))
Complexed With Tetrahydrobiopterin And Thienylalanine
pdb|1MMT|A Chain A, Crystal Structure Of Ternary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase (Fe(Ii))
Complexed With Tetrahydrobiopterin And Norleucine
Length = 325
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 24/65 (36%)
Query: 89 SFGRLPIASSHGPKLYAASHDSSLFRLYVGTRNKPMYGAGRNMQDLLELGKGLPLIIRMS 148
SFG L S PKL + + + Y T +P+Y + D E + I
Sbjct: 248 SFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRP 307
Query: 149 FRTNY 153
F Y
Sbjct: 308 FSVRY 312
>pdb|1TDW|A Chain A, Crystal Structure Of Double Truncated Human Phenylalanine
Hydroxylase Bh4-Responsive Pku Mutant A313t.
pdb|1TG2|A Chain A, Crystal Structure Of Phenylalanine Hydroxylase A313t
Mutant With 7,8-Dihydrobiopterin Bound
Length = 308
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 24/65 (36%)
Query: 89 SFGRLPIASSHGPKLYAASHDSSLFRLYVGTRNKPMYGAGRNMQDLLELGKGLPLIIRMS 148
SFG L S PKL + + + Y T +P+Y + D E + I
Sbjct: 234 SFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRP 293
Query: 149 FRTNY 153
F Y
Sbjct: 294 FSVRY 298
>pdb|1DMW|A Chain A, Crystal Structure Of Double Truncated Human Phenylalanine
Hydroxylase With Bound 7,8-Dihydro-L-Biopterin
Length = 307
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 24/65 (36%)
Query: 89 SFGRLPIASSHGPKLYAASHDSSLFRLYVGTRNKPMYGAGRNMQDLLELGKGLPLIIRMS 148
SFG L S PKL + + + Y T +P+Y + D E + I
Sbjct: 233 SFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRP 292
Query: 149 FRTNY 153
F Y
Sbjct: 293 FSVRY 297
>pdb|1PAH|A Chain A, Human Phenylalanine Hydroxylase Dimer, Residues 117-424
pdb|3PAH|A Chain A, Human Phenylalanine Hydroxylase Catalytic Domain Dimer
With Bound Adrenaline Inhibitor
pdb|4PAH|A Chain A, Human Phenylalanine Hydroxylase Catalytic Domain Dimer
With Bound Nor- Adrenaline Inhibitor
pdb|5PAH|A Chain A, Human Phenylalanine Hydroxylase Catalytic Domain Dimer
With Bound Dopamine Inhibitor
pdb|6PAH|A Chain A, Human Phenylalanine Hydroxylase Catalytic Domain Dimer
With Bound L- Dopa (3,4-Dihydroxyphenylalanine)
Inhibitor
Length = 308
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 24/65 (36%)
Query: 89 SFGRLPIASSHGPKLYAASHDSSLFRLYVGTRNKPMYGAGRNMQDLLELGKGLPLIIRMS 148
SFG L S PKL + + + Y T +P+Y + D E + I
Sbjct: 234 SFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRP 293
Query: 149 FRTNY 153
F Y
Sbjct: 294 FSVRY 298
>pdb|1MAE|H Chain H, The Active Site Structure Of Methylamine Dehydrogenase:
Hydrazines Identify C6 As The Reactive Site Of The
Tryptophan Derived Quinone Cofactor
pdb|1MAF|H Chain H, The Active Site Structure Of Methylamine Dehydrogenase:
Hydrazines Identify C6 As The Reactive Site Of The
Tryptophan Derived Quinone Cofactor
pdb|2MAD|H Chain H, The Active Site Structure Of Methylamine Dehydrogenase:
Hydrazines Identify C6 As The Reactive Site Of The
Tryptophan Derived Quinone Cofactor
Length = 373
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 95 IASSHGPKLYAASHDSSLFRLYVGTRNKPMYGAGRNMQDLLELGKGLPLIIRMS 148
+A GP LYA S + + +Y GAG Q +ELG G ++ M+
Sbjct: 325 VAQDGGPDLYALSAGTEVLHIYDA-------GAGDQDQSTVELGSGPQVLSVMN 371
>pdb|1CIA|A Chain A, Replacement Of Catalytic Histidine-195 Of Chloramphenicol
Acetyltransferase: Evidence For A General Base Role For
Glutamate
Length = 213
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 145 IRMSFRTNYRVVWDLIKPE---FHHEAECLLLLNRKY 178
+RM+ + + +VWD + P+ FH E E L+ Y
Sbjct: 68 LRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCPY 104
>pdb|1CLA|A Chain A, Evidence For Transition-State Stabilization By Serine-148
In The Catalytic Mechanism Of Chloramphenicol
Acetyltransferase
Length = 213
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 145 IRMSFRTNYRVVWDLIKPE---FHHEAECLLLLNRKY 178
+RM+ + + +VWD + P+ FH E E L+ Y
Sbjct: 68 LRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCPY 104
>pdb|3CLA|A Chain A, Refined Crystal Structure Of Type Iii Chloramphenicol
Acetyltransferase At 1.75 Angstroms Resolution
Length = 213
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 145 IRMSFRTNYRVVWDLIKPE---FHHEAECLLLLNRKY 178
+RM+ + + +VWD + P+ FH E E L+ Y
Sbjct: 68 LRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCPY 104
>pdb|4CLA|A Chain A, Alternative Binding Modes For Chloramphenicol And
1-substituted Chloramphenicol Analogues Revealed By
Site-directed Mutagenesis And X-ray Crystallography Of
Chloramphenicol Acetyltransferase
Length = 213
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 145 IRMSFRTNYRVVWDLIKPE---FHHEAECLLLLNRKY 178
+RM+ + + +VWD + P+ FH E E L+ Y
Sbjct: 68 LRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCPY 104
>pdb|2CLA|A Chain A, Crystal Structure Of The Asp-199-Asn Mutant Of
Chloramphenicol Acetyltransferase To 2.35 Angstroms
Resolution. Structural Consequences Of Disruption Of A
Buried Salt-Bridge
Length = 213
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 145 IRMSFRTNYRVVWDLIKPE---FHHEAECLLLLNRKY 178
+RM+ + + +VWD + P+ FH E E L+ Y
Sbjct: 68 LRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCPY 104
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 94 PIASSHGPKLYAASHDSSLF----RLYVGTRNKPMYGAGRNMQD-LLELGKGLPLIIRMS 148
P+ ++G +++SS F R++ GT+ K AG +++ LLE + + + S
Sbjct: 229 PVLEAYGNAKTTRNNNSSRFGKFIRIHFGTQGKI---AGADIETYLLEKSR---VTYQQS 282
Query: 149 FRTNYRVVWDLIKPEFHHEAECLL 172
NY + + L+ P F E +L
Sbjct: 283 AERNYHIFYQLLSPAFPENIEKIL 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,509,590
Number of Sequences: 62578
Number of extensions: 203853
Number of successful extensions: 478
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 14
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)