Query 047150
Match_columns 195
No_of_seqs 109 out of 347
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:10:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.8E-33 3.9E-38 234.8 23.9 177 4-193 39-215 (219)
2 PF03168 LEA_2: Late embryogen 99.5 2.1E-14 4.5E-19 104.1 6.6 99 67-171 1-100 (101)
3 smart00769 WHy Water Stress an 97.8 0.0002 4.3E-09 52.5 8.3 85 59-148 12-97 (100)
4 PLN03160 uncharacterized prote 94.8 0.88 1.9E-05 38.1 12.4 95 1-113 39-148 (219)
5 PF07092 DUF1356: Protein of u 94.3 0.59 1.3E-05 39.8 10.1 57 59-116 121-178 (238)
6 COG5608 LEA14-like dessication 93.6 3.1 6.7E-05 33.2 12.4 59 61-120 49-108 (161)
7 PF12751 Vac7: Vacuolar segreg 89.0 1.9 4.1E-05 39.1 7.6 31 64-95 350-380 (387)
8 PRK10893 lipopolysaccharide ex 81.4 12 0.00026 30.7 8.3 36 12-47 10-56 (192)
9 PF05545 FixQ: Cbb3-type cytoc 73.5 1.3 2.8E-05 28.2 0.4 26 6-31 9-34 (49)
10 COG4736 CcoQ Cbb3-type cytochr 70.8 1.6 3.5E-05 29.4 0.4 26 7-32 10-35 (60)
11 TIGR02588 conserved hypothetic 69.3 13 0.00028 28.6 5.0 34 10-43 10-45 (122)
12 cd01324 cbb3_Oxidase_CcoQ Cyto 65.5 3.2 7E-05 26.5 0.9 28 4-31 8-35 (48)
13 PRK06531 yajC preprotein trans 64.5 2.3 4.9E-05 32.2 0.1 18 16-33 9-26 (113)
14 PF14155 DUF4307: Domain of un 55.9 34 0.00073 25.5 5.2 34 13-49 12-46 (112)
15 PF08113 CoxIIa: Cytochrome c 54.1 4.5 9.8E-05 24.0 0.1 16 10-25 9-24 (34)
16 PF10907 DUF2749: Protein of u 49.6 26 0.00056 23.9 3.3 16 15-30 13-28 (66)
17 PF06092 DUF943: Enterobacteri 49.2 10 0.00022 30.4 1.4 20 10-29 9-28 (157)
18 PHA03049 IMV membrane protein; 48.1 7 0.00015 26.8 0.3 24 7-30 3-26 (68)
19 PF15012 DUF4519: Domain of un 48.1 21 0.00044 23.7 2.5 18 13-30 39-56 (56)
20 PF05961 Chordopox_A13L: Chord 46.2 7.5 0.00016 26.7 0.2 26 6-31 2-27 (68)
21 PF04478 Mid2: Mid2 like cell 46.0 15 0.00033 29.2 2.0 22 13-34 61-82 (154)
22 PF15145 DUF4577: Domain of un 39.8 19 0.00042 27.3 1.6 24 6-29 65-88 (128)
23 PF12505 DUF3712: Protein of u 36.4 89 0.0019 23.3 4.9 41 38-86 83-123 (125)
24 PF09911 DUF2140: Uncharacteri 32.6 62 0.0013 26.4 3.7 20 13-32 12-31 (187)
25 PF13473 Cupredoxin_1: Cupredo 32.2 33 0.00072 24.6 1.9 50 20-76 6-55 (104)
26 PF07760 DUF1616: Protein of u 32.0 2.3E+02 0.0049 24.4 7.3 58 17-81 150-209 (287)
27 COG1589 FtsQ Cell division sep 31.5 44 0.00096 28.5 2.8 78 13-91 39-135 (269)
28 PHA02680 ORF090 IMV phosphoryl 31.2 42 0.00092 24.3 2.1 31 3-33 48-78 (91)
29 PRK05529 cell division protein 30.3 80 0.0017 26.8 4.1 14 31-44 58-71 (255)
30 PF14283 DUF4366: Domain of un 29.4 61 0.0013 27.2 3.2 23 12-34 168-190 (218)
31 PF09604 Potass_KdpF: F subuni 29.2 17 0.00038 20.1 -0.1 22 10-31 3-24 (25)
32 PRK05886 yajC preprotein trans 28.5 15 0.00032 27.6 -0.6 16 18-33 13-28 (109)
33 PF09624 DUF2393: Protein of u 28.2 2.2E+02 0.0047 21.8 6.0 72 18-106 32-105 (149)
34 PF00695 vMSA: Major surface a 27.9 20 0.00043 32.2 0.0 21 1-21 220-240 (364)
35 PRK13183 psbN photosystem II r 27.8 93 0.002 19.8 3.0 26 5-30 8-33 (46)
36 COG1862 YajC Preprotein transl 26.5 15 0.00033 27.0 -0.8 24 10-33 9-33 (97)
37 PHA02898 virion envelope prote 25.0 56 0.0012 23.7 1.9 31 3-33 47-78 (92)
38 PF11606 AlcCBM31: Family 31 c 24.7 78 0.0017 22.8 2.5 28 71-98 4-32 (93)
39 PF13396 PLDc_N: Phospholipase 24.2 79 0.0017 19.2 2.3 19 12-30 28-46 (46)
40 COG4698 Uncharacterized protei 23.9 56 0.0012 26.9 1.9 24 18-41 25-48 (197)
41 PF03100 CcmE: CcmE; InterPro 23.4 2.7E+02 0.0058 21.1 5.6 20 83-108 81-100 (131)
42 PRK14759 potassium-transportin 22.8 28 0.00062 20.0 0.0 22 10-31 7-28 (29)
43 PF14828 Amnionless: Amnionles 22.6 45 0.00097 30.9 1.3 29 6-34 341-369 (437)
44 PF07509 DUF1523: Protein of u 22.6 4.3E+02 0.0093 21.5 6.9 36 13-48 10-45 (175)
45 PF02468 PsbN: Photosystem II 22.3 77 0.0017 19.9 1.9 25 6-30 6-30 (43)
46 PHA02902 putative IMV membrane 22.2 23 0.00049 24.2 -0.6 22 9-30 6-27 (70)
47 PF01102 Glycophorin_A: Glycop 22.1 30 0.00064 26.5 -0.0 24 15-38 77-101 (122)
48 PF06835 LptC: Lipopolysacchar 21.7 88 0.0019 23.8 2.6 13 32-44 33-45 (176)
49 PF06024 DUF912: Nucleopolyhed 21.3 1.2E+02 0.0027 22.0 3.2 28 6-33 65-92 (101)
50 COG4395 Uncharacterized protei 21.1 55 0.0012 28.6 1.5 29 6-34 56-84 (281)
51 PF03839 Sec62: Translocation 20.5 47 0.001 28.1 0.9 24 4-27 148-171 (224)
52 PTZ00382 Variant-specific surf 20.5 58 0.0013 23.7 1.3 16 13-28 77-92 (96)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=234.85 Aligned_cols=177 Identities=10% Similarity=0.091 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHHHHHHheeeeEEecCCCCeEEEEEEEEEEEeecCCCCCCccccceEEEEEEEEEEEecCCCeEEEEEcC
Q 047150 4 DLFANKLETFAEFGSCIACFFMASKPPPPLISIKIAGIRQFGLGEGVDSTGVATKILTSNCSVDLLVDNKSKLFGLHISP 83 (195)
Q Consensus 4 ~l~~~~l~~i~l~gi~~lilwlv~rP~~P~f~v~~~~v~~fnl~~~~d~sg~~t~~l~~n~~~~v~~~NPN~~igI~Y~~ 83 (195)
||.+.+.++++++++++.++|+++|||.|+|+++++++++|+++.+. .+...++++++++++++|||+ +||+|++
T Consensus 39 c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~----~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~ 113 (219)
T PLN03160 39 CCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNT----TLRPGTNITLIADVSVKNPNV-ASFKYSN 113 (219)
T ss_pred EHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCC----CCceeEEEEEEEEEEEECCCc-eeEEEcC
Confidence 34444444556678888899999999999999999999999997521 122356777888899999999 8999999
Q ss_pred CEEEEEECceeeccCCCCCCcccCCCeeEEEEEEEEeeeeccCccccchhhhhcCceEeEEEEEEEEEeEEEEEEEEcce
Q 047150 84 PVIDMSFGRLPIASSHGPKLYAASHDSSLFRLYVGTRNKPMYGAGRNMQDLLELGKGLPLIIRMSFRTNYRVVWDLIKPE 163 (195)
Q Consensus 84 ~~~~v~Y~~~~la~~~lp~FyQ~~kn~t~v~~~l~g~~v~l~~~~~~l~~~~~~~g~V~l~l~~~~rvr~kv~G~l~~~~ 163 (195)
+++.++|+|+.+|.+.+|+|||++++++.+.+.+......+.. +..|.++.+ +|.+||+++++++.|.++ |.+.+++
T Consensus 114 ~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~-~~~L~~D~~-~G~v~l~~~~~v~gkVkv-~~i~k~~ 190 (219)
T PLN03160 114 TTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS-VPGLLTDIS-SGLLNMNSYTRIGGKVKI-LKIIKKH 190 (219)
T ss_pred eEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc-chhHHHHhh-CCeEEEEEEEEEEEEEEE-EEEEEEE
Confidence 9999999999999999999999999999999987654322222 345655544 789999999999999994 6788999
Q ss_pred eeEEEEEEEEEecCCCCcccceeecCceee
Q 047150 164 FHHEAECLLLLNRKYDKKHRTQVYNSTCIT 193 (195)
Q Consensus 164 ~~~~V~C~~~v~~~~~~~~~~~~~~~~C~~ 193 (195)
++.+++|++.|+..+ ..+++..|+.
T Consensus 191 v~~~v~C~v~V~~~~-----~~i~~~~C~~ 215 (219)
T PLN03160 191 VVVKMNCTMTVNITS-----QAIQGQKCKR 215 (219)
T ss_pred EEEEEEeEEEEECCC-----CEEeccEecc
Confidence 999999999997743 4567778975
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.53 E-value=2.1e-14 Score=104.08 Aligned_cols=99 Identities=18% Similarity=0.287 Sum_probs=72.8
Q ss_pred EEEEecCCCeEEEEEcCCEEEEEECceeec-cCCCCCCcccCCCeeEEEEEEEEeeeeccCccccchhhhhcCceEeEEE
Q 047150 67 DLLVDNKSKLFGLHISPPVIDMSFGRLPIA-SSHGPKLYAASHDSSLFRLYVGTRNKPMYGAGRNMQDLLELGKGLPLII 145 (195)
Q Consensus 67 ~v~~~NPN~~igI~Y~~~~~~v~Y~~~~la-~~~lp~FyQ~~kn~t~v~~~l~g~~v~l~~~~~~l~~~~~~~g~V~l~l 145 (195)
+++++|||. ++|+|++.++.++|+|..+| ....++|+|++++++.+...+..+...+ ...+.++. ++..++++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~~~--~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKDLL--AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHHHH--HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHhhh--ccccceEE
Confidence 478899999 99999999999999999999 7788999999999999999877765443 33444333 24567777
Q ss_pred EEEEEEeEEEEEEEEcceeeEEEEEE
Q 047150 146 RMSFRTNYRVVWDLIKPEFHHEAECL 171 (195)
Q Consensus 146 ~~~~rvr~kv~G~l~~~~~~~~V~C~ 171 (195)
.++++.+++|++.....+++..++|.
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEeE
Confidence 77777788854544445566666664
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=97.77 E-value=0.0002 Score=52.46 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=62.6
Q ss_pred eEEEEEEEEEEEecCCCeEEEEEcCCEEEEEECceeeccCCCC-CCcccCCCeeEEEEEEEEeeeeccCccccchhhhhc
Q 047150 59 ILTSNCSVDLLVDNKSKLFGLHISPPVIDMSFGRLPIASSHGP-KLYAASHDSSLFRLYVGTRNKPMYGAGRNMQDLLEL 137 (195)
Q Consensus 59 ~l~~n~~~~v~~~NPN~~igI~Y~~~~~~v~Y~~~~la~~~lp-~FyQ~~kn~t~v~~~l~g~~v~l~~~~~~l~~~~~~ 137 (195)
.....+.+++.+.|||.. .+.|+..+..++|+|..+|+|..+ ..-.+.++++.+.+.+.-+. ....+.+.+ ..+
T Consensus 12 ~~~~~~~l~l~v~NPN~~-~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~---~~~~~~~~~-l~~ 86 (100)
T smart00769 12 GLEIEIVLKVKVQNPNPF-PIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNL---FLAEALIWH-IAN 86 (100)
T ss_pred ceEEEEEEEEEEECCCCC-ccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeeh---hHhHHHHHh-hcc
Confidence 356778888999999996 999999999999999999999985 68899999999988876631 111222222 233
Q ss_pred CceEeEEEEEE
Q 047150 138 GKGLPLIIRMS 148 (195)
Q Consensus 138 ~g~V~l~l~~~ 148 (195)
+..++.+++.+
T Consensus 87 ~~~~~y~l~g~ 97 (100)
T smart00769 87 GEEIPYRLDGK 97 (100)
T ss_pred CCCccEEEEEE
Confidence 44566665554
No 4
>PLN03160 uncharacterized protein; Provisional
Probab=94.81 E-value=0.88 Score=38.06 Aligned_cols=95 Identities=9% Similarity=0.064 Sum_probs=65.0
Q ss_pred ChhhHHHHHHHHHHHHHHHheeeeEEecC--CCCeEEEEEEEEEE-------EeecCCCCCCccccceEEEEEE------
Q 047150 1 MCLDLFANKLETFAEFGSCIACFFMASKP--PPPLISIKIAGIRQ-------FGLGEGVDSTGVATKILTSNCS------ 65 (195)
Q Consensus 1 ~~~~l~~~~l~~i~l~gi~~lilwlv~rP--~~P~f~v~~~~v~~-------fnl~~~~d~sg~~t~~l~~n~~------ 65 (195)
||.++++.+|+++++++++++.++=-=+| +--.++++++.++. +|++ ++++++
T Consensus 39 c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~t------------l~~~v~v~NPN~ 106 (219)
T PLN03160 39 CCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNIT------------LIADVSVKNPNV 106 (219)
T ss_pred EHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEE------------EEEEEEEECCCc
Confidence 79999999999888887777777667899 57778888887753 2322 222111
Q ss_pred EEEEEecCCCeEEEEEcCCEEEEEECceeeccCCCCCCcccCCCeeEE
Q 047150 66 VDLLVDNKSKLFGLHISPPVIDMSFGRLPIASSHGPKLYAASHDSSLF 113 (195)
Q Consensus 66 ~~v~~~NPN~~igI~Y~~~~~~v~Y~~~~la~~~lp~FyQ~~kn~t~v 113 (195)
..+..+ |-...++|+...+ +...+..|..+++.+.+.|.++.
T Consensus 107 ~~~~Y~--~~~~~v~Y~g~~v----G~a~~p~g~~~ar~T~~l~~tv~ 148 (219)
T PLN03160 107 ASFKYS--NTTTTIYYGGTVV----GEARTPPGKAKARRTMRMNVTVD 148 (219)
T ss_pred eeEEEc--CeEEEEEECCEEE----EEEEcCCcccCCCCeEEEEEEEE
Confidence 234443 3457889987544 34567777889999999888853
No 5
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=94.31 E-value=0.59 Score=39.78 Aligned_cols=57 Identities=9% Similarity=0.153 Sum_probs=42.1
Q ss_pred eEEEEEEEEEEEecCCCeEEEEEcCCEEEEEECceeeccCCCCCC-cccCCCeeEEEEE
Q 047150 59 ILTSNCSVDLLVDNKSKLFGLHISPPVIDMSFGRLPIASSHGPKL-YAASHDSSLFRLY 116 (195)
Q Consensus 59 ~l~~n~~~~v~~~NPN~~igI~Y~~~~~~v~Y~~~~la~~~lp~F-yQ~~kn~t~v~~~ 116 (195)
.+..|++-.+.+.|||= +-|......+++.|...-+|.+..... .-++++...+...
T Consensus 121 ~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~t 178 (238)
T PF07092_consen 121 TVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYT 178 (238)
T ss_pred EEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEE
Confidence 57888888899999996 599999999999999998998865322 3334444444433
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=93.57 E-value=3.1 Score=33.20 Aligned_cols=59 Identities=5% Similarity=0.011 Sum_probs=49.1
Q ss_pred EEEEEEEEEEecCCCeEEEEEcCCEEEEEECceeeccCCC-CCCcccCCCeeEEEEEEEEe
Q 047150 61 TSNCSVDLLVDNKSKLFGLHISPPVIDMSFGRLPIASSHG-PKLYAASHDSSLFRLYVGTR 120 (195)
Q Consensus 61 ~~n~~~~v~~~NPN~~igI~Y~~~~~~v~Y~~~~la~~~l-p~FyQ~~kn~t~v~~~l~g~ 120 (195)
...+-.++.++|||.. -|-....+..++-+|..+|.|.. ..+--++++..++.+.+.-+
T Consensus 49 ~~EiV~t~KiyNPN~f-PipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d 108 (161)
T COG5608 49 ETEIVGTLKIYNPNPF-PIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLD 108 (161)
T ss_pred ceEEEEEEEecCCCCc-ceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEEEe
Confidence 4466678889999995 88888888889889999999975 55888999999999886654
No 7
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=89.04 E-value=1.9 Score=39.15 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=23.9
Q ss_pred EEEEEEEecCCCeEEEEEcCCEEEEEECceee
Q 047150 64 CSVDLLVDNKSKLFGLHISPPVIDMSFGRLPI 95 (195)
Q Consensus 64 ~~~~v~~~NPN~~igI~Y~~~~~~v~Y~~~~l 95 (195)
++++|.+.|||= |.|..++.++.+|=+..-+
T Consensus 350 fdl~V~A~NPn~-~~V~I~d~dldIFAKS~yv 380 (387)
T PF12751_consen 350 FDLTVEAFNPNW-FTVTIDDMDLDIFAKSRYV 380 (387)
T ss_pred EeeEEEEECCCe-EEEEeccceeeeEecCCcc
Confidence 345778999998 5999999999988554433
No 8
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=81.39 E-value=12 Score=30.67 Aligned_cols=36 Identities=3% Similarity=-0.053 Sum_probs=25.6
Q ss_pred HHHHHHHHheeeeE-----------EecCCCCeEEEEEEEEEEEeec
Q 047150 12 TFAEFGSCIACFFM-----------ASKPPPPLISIKIAGIRQFGLG 47 (195)
Q Consensus 12 ~i~l~gi~~lilwl-----------v~rP~~P~f~v~~~~v~~fnl~ 47 (195)
+|+.+++.+++.|. ...+|.|.|..++++...|+-+
T Consensus 10 ~il~~~~l~l~~W~l~~~~~~~~~~~~~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 10 ILLALIALVLIGWNLADKDEDTAPVVVNNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred HHHHHHHHHHHHhhccCCccccccccCCCCCCCEEEeccEEEEECCC
Confidence 34444445555564 3457899999999999999875
No 9
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=73.50 E-value=1.3 Score=28.16 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHheeeeEEecCCC
Q 047150 6 FANKLETFAEFGSCIACFFMASKPPP 31 (195)
Q Consensus 6 ~~~~l~~i~l~gi~~lilwlv~rP~~ 31 (195)
++..+.+++++++++.|+|.+++|++
T Consensus 9 ~~~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 9 FARSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 45566778888888888999999974
No 10
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=70.85 E-value=1.6 Score=29.37 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHheeeeEEecCCCC
Q 047150 7 ANKLETFAEFGSCIACFFMASKPPPP 32 (195)
Q Consensus 7 ~~~l~~i~l~gi~~lilwlv~rP~~P 32 (195)
+..+++++++.+++.++|.++||++-
T Consensus 10 a~a~~t~~~~l~fiavi~~ayr~~~K 35 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAYRPGKK 35 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccch
Confidence 44456677777788999999999753
No 11
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=69.28 E-value=13 Score=28.55 Aligned_cols=34 Identities=6% Similarity=0.066 Sum_probs=22.5
Q ss_pred HHHHHHHHHHheee--eEEecCCCCeEEEEEEEEEE
Q 047150 10 LETFAEFGSCIACF--FMASKPPPPLISIKIAGIRQ 43 (195)
Q Consensus 10 l~~i~l~gi~~lil--wlv~rP~~P~f~v~~~~v~~ 43 (195)
+..+++++++.+++ |+.-++++|.+.+......+
T Consensus 10 Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r 45 (122)
T TIGR02588 10 ISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER 45 (122)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeE
Confidence 34455556665655 56667789999887766654
No 12
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=65.48 E-value=3.2 Score=26.52 Aligned_cols=28 Identities=11% Similarity=-0.047 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHheeeeEEecCCC
Q 047150 4 DLFANKLETFAEFGSCIACFFMASKPPP 31 (195)
Q Consensus 4 ~l~~~~l~~i~l~gi~~lilwlv~rP~~ 31 (195)
+-++...+++.++++++.|+|.+++|+.
T Consensus 8 r~~a~~~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 8 RGLADSWGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3456667777778888999999999964
No 13
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=64.52 E-value=2.3 Score=32.22 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=11.1
Q ss_pred HHHHheeeeEEecCCCCe
Q 047150 16 FGSCIACFFMASKPPPPL 33 (195)
Q Consensus 16 ~gi~~lilwlv~rP~~P~ 33 (195)
+.+++.++|+.+||++=+
T Consensus 9 ~vv~~~i~yf~iRPQkKr 26 (113)
T PRK06531 9 FVVMLGLIFFMQRQQKKQ 26 (113)
T ss_pred HHHHHHHHHheechHHHH
Confidence 333444467789997654
No 14
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=55.94 E-value=34 Score=25.53 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=19.0
Q ss_pred HHHHHHHheeeeEEec-CCCCeEEEEEEEEEEEeecCC
Q 047150 13 FAEFGSCIACFFMASK-PPPPLISIKIAGIRQFGLGEG 49 (195)
Q Consensus 13 i~l~gi~~lilwlv~r-P~~P~f~v~~~~v~~fnl~~~ 49 (195)
++++.+++++.|+.++ ...|.++ .+...|++.+.
T Consensus 12 v~~vv~~~~~~w~~~~~~~~~~v~---~~~~gf~vv~d 46 (112)
T PF14155_consen 12 VLVVVAGAVVAWFGYSQFGSPPVS---AEVIGFEVVDD 46 (112)
T ss_pred HHHHHHHHHHhHhhhhhccCCCce---EEEEEEEECCC
Confidence 3444445566677777 4556554 44556666543
No 15
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=54.11 E-value=4.5 Score=23.97 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=10.6
Q ss_pred HHHHHHHHHHheeeeE
Q 047150 10 LETFAEFGSCIACFFM 25 (195)
Q Consensus 10 l~~i~l~gi~~lilwl 25 (195)
++.+.++++++|++|+
T Consensus 9 l~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 9 LGVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHH
Confidence 3445666777788875
No 16
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=49.59 E-value=26 Score=23.93 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=13.2
Q ss_pred HHHHHheeeeEEecCC
Q 047150 15 EFGSCIACFFMASKPP 30 (195)
Q Consensus 15 l~gi~~lilwlv~rP~ 30 (195)
+.+.+..+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 5556788999999998
No 17
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=49.17 E-value=10 Score=30.39 Aligned_cols=20 Identities=5% Similarity=0.270 Sum_probs=14.0
Q ss_pred HHHHHHHHHHheeeeEEecC
Q 047150 10 LETFAEFGSCIACFFMASKP 29 (195)
Q Consensus 10 l~~i~l~gi~~lilwlv~rP 29 (195)
+..++++|+++.++|+.+||
T Consensus 9 i~~l~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 9 IIALFLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHHHHHhhhhccCC
Confidence 33355555555889999999
No 18
>PHA03049 IMV membrane protein; Provisional
Probab=48.15 E-value=7 Score=26.77 Aligned_cols=24 Identities=0% Similarity=-0.226 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHheeeeEEecCC
Q 047150 7 ANKLETFAEFGSCIACFFMASKPP 30 (195)
Q Consensus 7 ~~~l~~i~l~gi~~lilwlv~rP~ 30 (195)
+-++.+++.+++++||+|.+++-+
T Consensus 3 ~d~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 3 GDIILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556888999999999999753
No 19
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=48.10 E-value=21 Score=23.70 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=13.2
Q ss_pred HHHHHHHheeeeEEecCC
Q 047150 13 FAEFGSCIACFFMASKPP 30 (195)
Q Consensus 13 i~l~gi~~lilwlv~rP~ 30 (195)
.+++-++++++|+.-||+
T Consensus 39 ~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 39 AAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHhheeEEeccCC
Confidence 444555678899999995
No 20
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=46.19 E-value=7.5 Score=26.71 Aligned_cols=26 Identities=0% Similarity=-0.157 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHheeeeEEecCCC
Q 047150 6 FANKLETFAEFGSCIACFFMASKPPP 31 (195)
Q Consensus 6 ~~~~l~~i~l~gi~~lilwlv~rP~~ 31 (195)
+.-++.+++.++++++|+|.+++-++
T Consensus 2 I~d~iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 2 IGDFILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456668889999999999997643
No 21
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=45.97 E-value=15 Score=29.24 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=17.2
Q ss_pred HHHHHHHheeeeEEecCCCCeE
Q 047150 13 FAEFGSCIACFFMASKPPPPLI 34 (195)
Q Consensus 13 i~l~gi~~lilwlv~rP~~P~f 34 (195)
.++++++++++|+-.|+++=.|
T Consensus 61 ~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHHhheeEEEecccCcc
Confidence 4556788889999999988554
No 22
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=39.80 E-value=19 Score=27.27 Aligned_cols=24 Identities=4% Similarity=0.037 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHheeeeEEecC
Q 047150 6 FANKLETFAEFGSCIACFFMASKP 29 (195)
Q Consensus 6 ~~~~l~~i~l~gi~~lilwlv~rP 29 (195)
++-++++++-++++.|+.||+++-
T Consensus 65 vglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 65 VGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHheeec
Confidence 334455677888899999998875
No 23
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=36.40 E-value=89 Score=23.29 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=23.4
Q ss_pred EEEEEEEeecCCCCCCccccceEEEEEEEEEEEecCCCeEEEEEcCCEE
Q 047150 38 IAGIRQFGLGEGVDSTGVATKILTSNCSVDLLVDNKSKLFGLHISPPVI 86 (195)
Q Consensus 38 ~~~v~~fnl~~~~d~sg~~t~~l~~n~~~~v~~~NPN~~igI~Y~~~~~ 86 (195)
.++|.++++..+... . ..|+..++...||+. +++......+
T Consensus 83 g~~I~~~~v~~~~~~-----~--g~~~~~~~~l~NPS~-~ti~lG~v~~ 123 (125)
T PF12505_consen 83 GFTISDFDVTGGTPA-----D--GINLNATVTLPNPSP-LTIDLGNVTL 123 (125)
T ss_pred CceEeeEEeecCCCC-----C--cEEEEEEEEEcCCCe-EEEEeccEEE
Confidence 344566665543211 1 345566677799988 5776655443
No 24
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=32.64 E-value=62 Score=26.36 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=15.3
Q ss_pred HHHHHHHheeeeEEecCCCC
Q 047150 13 FAEFGSCIACFFMASKPPPP 32 (195)
Q Consensus 13 i~l~gi~~lilwlv~rP~~P 32 (195)
.+++++++.++..+++|..|
T Consensus 12 a~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 12 ALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHhheeeEEEccCCC
Confidence 35567777888899999866
No 25
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=32.23 E-value=33 Score=24.58 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=12.5
Q ss_pred heeeeEEecCCCCeEEEEEEEEEEEeecCCCCCCccccceEEEEEEEEEEEecCCCe
Q 047150 20 IACFFMASKPPPPLISIKIAGIRQFGLGEGVDSTGVATKILTSNCSVDLLVDNKSKL 76 (195)
Q Consensus 20 ~lilwlv~rP~~P~f~v~~~~v~~fnl~~~~d~sg~~t~~l~~n~~~~v~~~NPN~~ 76 (195)
++.+|+........-..-.++++++.++.. +-.+..+-.+++.++|.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~v~I~~~~~~f~P~-------~i~v~~G~~v~l~~~N~~~~ 55 (104)
T PF13473_consen 6 AAALALSSSASAAAAQTVTITVTDFGFSPS-------TITVKAGQPVTLTFTNNDSR 55 (104)
T ss_dssp ------------------------EEEES--------EEEEETTCEEEEEEEE-SSS
T ss_pred cccccccccccccccccccccccCCeEecC-------EEEEcCCCeEEEEEEECCCC
Confidence 344444444444444455556666655432 11233333567777887654
No 26
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=32.01 E-value=2.3e+02 Score=24.42 Aligned_cols=58 Identities=10% Similarity=-0.019 Sum_probs=32.2
Q ss_pred HHHheeeeEEecCCCCeEEEEEEEEEEEeecCCCCCC-ccccce-EEEEEEEEEEEecCCCeEEEEE
Q 047150 17 GSCIACFFMASKPPPPLISIKIAGIRQFGLGEGVDST-GVATKI-LTSNCSVDLLVDNKSKLFGLHI 81 (195)
Q Consensus 17 gi~~lilwlv~rP~~P~f~v~~~~v~~fnl~~~~d~s-g~~t~~-l~~n~~~~v~~~NPN~~igI~Y 81 (195)
+++..+.|.+..|++.+- ++.|.+..+++-+ ..|++. ...+.++.+-+.|.-.+ ...|
T Consensus 150 ~~v~~~~~~~~~p~~~e~------fTefyll~~~~~a~~Ypt~l~~ge~~~v~vgI~NhE~~-~~~Y 209 (287)
T PF07760_consen 150 AAVGSVGYAVVFPKQGEP------FTEFYLLGENGKAGDYPTNLTSGEPGTVIVGIENHEGR-PENY 209 (287)
T ss_pred HHHHHheeEEecCCCCCC------ceEEEEECCCCccccCCeeEEcCCcEEEEEEEEcCCCC-cEEE
Confidence 333477888888876532 2556665444422 234432 33445667777776665 4444
No 27
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=31.53 E-value=44 Score=28.50 Aligned_cols=78 Identities=10% Similarity=0.093 Sum_probs=47.2
Q ss_pred HHHHHHHheeeeEEecCCCCeEEEEEEEEEEEeecCCCC---CCcc--ccceEEEEE--------------EEEEEEecC
Q 047150 13 FAEFGSCIACFFMASKPPPPLISIKIAGIRQFGLGEGVD---STGV--ATKILTSNC--------------SVDLLVDNK 73 (195)
Q Consensus 13 i~l~gi~~lilwlv~rP~~P~f~v~~~~v~~fnl~~~~d---~sg~--~t~~l~~n~--------------~~~v~~~NP 73 (195)
++++++.++++|...-+..|-|.++.+.|++=+..+.-+ .++. .+.+++.|. ++.|+=.=|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn~~~s~~~I~~~~~l~~~~~~~~ld~~~~~~~i~~~PwVk~a~V~r~~P 118 (269)
T COG1589 39 LVLLLLVLVVLWVLILLSLPYFPIRKVSVSGNNQVSEEDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRRQFP 118 (269)
T ss_pred HHHHHHHHHHHheehhhhcCCccceEEEEecCcccCHHHHHHHhhhccCCceEEEcHHHHHHHHHhCCCeEEEEEEEeCC
Confidence 455667788889999999999999999999733222101 0010 112333221 234444558
Q ss_pred CCeEEEEEcCCEEEEEEC
Q 047150 74 SKLFGLHISPPVIDMSFG 91 (195)
Q Consensus 74 N~~igI~Y~~~~~~v~Y~ 91 (195)
|+ +-|+..+=+.-++++
T Consensus 119 nt-v~I~v~Er~piA~w~ 135 (269)
T COG1589 119 NT-LEIEVVEREPIAYWQ 135 (269)
T ss_pred Cc-EEEEEEEeeeEEEEe
Confidence 87 477777766666664
No 28
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=31.16 E-value=42 Score=24.27 Aligned_cols=31 Identities=10% Similarity=0.136 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHheeeeEEecCCCCe
Q 047150 3 LDLFANKLETFAEFGSCIACFFMASKPPPPL 33 (195)
Q Consensus 3 ~~l~~~~l~~i~l~gi~~lilwlv~rP~~P~ 33 (195)
++.++.+++.++++|++++--|--.+|++|.
T Consensus 48 lSii~FIlG~vl~lGilifs~y~~C~~~~~~ 78 (91)
T PHA02680 48 LSVTCFIVGAVLLLGLFVFSMYRKCSGSMPY 78 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcee
Confidence 4677888889999999999999988887775
No 29
>PRK05529 cell division protein FtsQ; Provisional
Probab=30.26 E-value=80 Score=26.83 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=12.3
Q ss_pred CCeEEEEEEEEEEE
Q 047150 31 PPLISIKIAGIRQF 44 (195)
Q Consensus 31 ~P~f~v~~~~v~~f 44 (195)
+|.|.|+++.|++-
T Consensus 58 Sp~~~v~~I~V~Gn 71 (255)
T PRK05529 58 SPLLALRSIEVAGN 71 (255)
T ss_pred CCceEEEEEEEECC
Confidence 69999999999864
No 30
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=29.38 E-value=61 Score=27.21 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=15.4
Q ss_pred HHHHHHHHheeeeEEecCCCCeE
Q 047150 12 TFAEFGSCIACFFMASKPPPPLI 34 (195)
Q Consensus 12 ~i~l~gi~~lilwlv~rP~~P~f 34 (195)
+|+++|..++.+|-++||+....
T Consensus 168 lv~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 168 LVALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHHhhcceEEEEEEeccccccc
Confidence 34445556777777899977654
No 31
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=29.17 E-value=17 Score=20.09 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=14.5
Q ss_pred HHHHHHHHHHheeeeEEecCCC
Q 047150 10 LETFAEFGSCIACFFMASKPPP 31 (195)
Q Consensus 10 l~~i~l~gi~~lilwlv~rP~~ 31 (195)
+..++.+|+++-.+|..+||.+
T Consensus 3 l~~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 3 LGGIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 3445666666667777788864
No 32
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=28.51 E-value=15 Score=27.64 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=9.7
Q ss_pred HHheeeeEEecCCCCe
Q 047150 18 SCIACFFMASKPPPPL 33 (195)
Q Consensus 18 i~~lilwlv~rP~~P~ 33 (195)
++++.+|+..||++=+
T Consensus 13 i~~i~yF~~iRPQkKr 28 (109)
T PRK05886 13 IMGGFMYFASRRQRKA 28 (109)
T ss_pred HHHHHHHHHccHHHHH
Confidence 3344456778996544
No 33
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=28.25 E-value=2.2e+02 Score=21.75 Aligned_cols=72 Identities=10% Similarity=0.011 Sum_probs=39.2
Q ss_pred HHheeeeEEecC--CCCeEEEEEEEEEEEeecCCCCCCccccceEEEEEEEEEEEecCCCeEEEEEcCCEEEEEECceee
Q 047150 18 SCIACFFMASKP--PPPLISIKIAGIRQFGLGEGVDSTGVATKILTSNCSVDLLVDNKSKLFGLHISPPVIDMSFGRLPI 95 (195)
Q Consensus 18 i~~lilwlv~rP--~~P~f~v~~~~v~~fnl~~~~d~sg~~t~~l~~n~~~~v~~~NPN~~igI~Y~~~~~~v~Y~~~~l 95 (195)
++.+++|.++.. ++|+.++.+..- ++.++ .+.+..+++|-.++ -+..=..++.+..++...
T Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~~--l~~~~--------------~~~v~g~V~N~g~~-~i~~c~i~~~l~~~~~~~ 94 (149)
T PF09624_consen 32 LIPFFGYYWLDKYLKKIELTLTSQKR--LQYSE--------------SFYVDGTVTNTGKF-TIKKCKITVKLYNDKQVS 94 (149)
T ss_pred HHHHHHHHHHhhhcCCceEEEeeeee--eeecc--------------EEEEEEEEEECCCC-EeeEEEEEEEEEeCCCcc
Confidence 345555666665 566666544433 33322 22344667887776 666666667777655544
Q ss_pred ccCCCCCCccc
Q 047150 96 ASSHGPKLYAA 106 (195)
Q Consensus 96 a~~~lp~FyQ~ 106 (195)
......-+||.
T Consensus 95 ~n~~~~~~~~~ 105 (149)
T PF09624_consen 95 GNKFKEIFYQQ 105 (149)
T ss_pred Cchhhhhhccc
Confidence 44433444443
No 34
>PF00695 vMSA: Major surface antigen from hepadnavirus; InterPro: IPR000349 This family contains the major surface antigens of the hepatitus viruses (Hepadnaviridae). The protein is most likely required for an early step of the life cycle involving entry or uncoating of virus particles.; GO: 0016032 viral reproduction; PDB: 1KCR_P 1WZ4_A 2EH8_P 1KC5_P.
Probab=27.91 E-value=20 Score=32.22 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHHhe
Q 047150 1 MCLDLFANKLETFAEFGSCIA 21 (195)
Q Consensus 1 ~~~~l~~~~l~~i~l~gi~~l 21 (195)
||++.|..+|.++++.+++++
T Consensus 220 ~~lr~fiifl~ill~~~~~l~ 240 (364)
T PF00695_consen 220 MCLRRFIIFLFILLLCLIFLL 240 (364)
T ss_dssp ---------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 799998777766555444433
No 35
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=27.75 E-value=93 Score=19.77 Aligned_cols=26 Identities=15% Similarity=-0.040 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHheeeeEEecCC
Q 047150 5 LFANKLETFAEFGSCIACFFMASKPP 30 (195)
Q Consensus 5 l~~~~l~~i~l~gi~~lilwlv~rP~ 30 (195)
.+.++.+..+++|+...-+|.++-|.
T Consensus 8 ~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 8 LSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred HHHHHHHHHHHHHHhhheeeeccCCc
Confidence 34455566788899999999999984
No 36
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=26.47 E-value=15 Score=26.97 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=13.8
Q ss_pred HHHHHHHHHHheeeeE-EecCCCCe
Q 047150 10 LETFAEFGSCIACFFM-ASKPPPPL 33 (195)
Q Consensus 10 l~~i~l~gi~~lilwl-v~rP~~P~ 33 (195)
+.+++.+.++.+++|. ++||++=+
T Consensus 9 ~~~ll~~vl~~~ifyFli~RPQrKr 33 (97)
T COG1862 9 LVLLLPLVLIFAIFYFLIIRPQRKR 33 (97)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 4444444445555554 99996543
No 37
>PHA02898 virion envelope protein; Provisional
Probab=25.01 E-value=56 Score=23.70 Aligned_cols=31 Identities=6% Similarity=-0.070 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHheeeeE-EecCCCCe
Q 047150 3 LDLFANKLETFAEFGSCIACFFM-ASKPPPPL 33 (195)
Q Consensus 3 ~~l~~~~l~~i~l~gi~~lilwl-v~rP~~P~ 33 (195)
++.++.+++.++++|++++--|- -.+|++|.
T Consensus 47 lSii~FIlgivl~lG~~ifs~y~r~C~~~~~~ 78 (92)
T PHA02898 47 ISIISFILAIILILGIIFFKGYNMFCGGNTTD 78 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 56778888889999999999998 77787765
No 38
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=24.73 E-value=78 Score=22.85 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=18.8
Q ss_pred ecCCCeEEEEE-cCCEEEEEECceeeccC
Q 047150 71 DNKSKLFGLHI-SPPVIDMSFGRLPIASS 98 (195)
Q Consensus 71 ~NPN~~igI~Y-~~~~~~v~Y~~~~la~~ 98 (195)
.||+.-+|+.| ++.++.|+-.+.-...+
T Consensus 4 e~c~~dFg~~Yvsds~ievfH~d~gWsAg 32 (93)
T PF11606_consen 4 ENCSEDFGYNYVSDSEIEVFHKDNGWSAG 32 (93)
T ss_dssp GGGTSSEEEEEEETTEEEEEEE------S
T ss_pred CCcchhhCeeeecCceEEEEEecCCccce
Confidence 68999999999 67899998777644443
No 39
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=24.16 E-value=79 Score=19.18 Aligned_cols=19 Identities=5% Similarity=-0.054 Sum_probs=13.7
Q ss_pred HHHHHHHHheeeeEEecCC
Q 047150 12 TFAEFGSCIACFFMASKPP 30 (195)
Q Consensus 12 ~i~l~gi~~lilwlv~rP~ 30 (195)
.++++-++..++|++++++
T Consensus 28 ~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 28 VILFFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHHHHhheEEEeCC
Confidence 3445677888889988764
No 40
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.91 E-value=56 Score=26.90 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=18.3
Q ss_pred HHheeeeEEecCCCCeEEEEEEEE
Q 047150 18 SCIACFFMASKPPPPLISIKIAGI 41 (195)
Q Consensus 18 i~~lilwlv~rP~~P~f~v~~~~v 41 (195)
+++++.-.++.|+.|...+.+++=
T Consensus 25 ~~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 25 LAVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHhheeeccCCCCCchhhccCc
Confidence 336677778899998888877755
No 41
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=23.42 E-value=2.7e+02 Score=21.08 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=9.4
Q ss_pred CCEEEEEECceeeccCCCCCCcccCC
Q 047150 83 PPVIDMSFGRLPIASSHGPKLYAASH 108 (195)
Q Consensus 83 ~~~~~v~Y~~~~la~~~lp~FyQ~~k 108 (195)
.-++.|.|.|. +|+.|+...
T Consensus 81 ~~~i~V~Y~G~------~Pd~F~eg~ 100 (131)
T PF03100_consen 81 GKEIPVVYTGP------LPDLFREGQ 100 (131)
T ss_dssp S-EEEEEEES--------CTT--TTS
T ss_pred CcEEEEEECCC------CCccccCCC
Confidence 34567777664 777666543
No 42
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=22.84 E-value=28 Score=19.95 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=13.9
Q ss_pred HHHHHHHHHHheeeeEEecCCC
Q 047150 10 LETFAEFGSCIACFFMASKPPP 31 (195)
Q Consensus 10 l~~i~l~gi~~lilwlv~rP~~ 31 (195)
++.++.+|+.+-.++..+||.+
T Consensus 7 l~~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 7 LAGAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 4445556666666677778864
No 43
>PF14828 Amnionless: Amnionless
Probab=22.60 E-value=45 Score=30.90 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHheeeeEEecCCCCeE
Q 047150 6 FANKLETFAEFGSCIACFFMASKPPPPLI 34 (195)
Q Consensus 6 ~~~~l~~i~l~gi~~lilwlv~rP~~P~f 34 (195)
++.+|+.++++++++.++|+.+.|+.|.+
T Consensus 341 ~~~vl~~Lllv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 341 VGIVLGCLLLVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred eeehHHHHHHHHHHHHhheEEeccccccc
Confidence 44556566777777777777776666654
No 44
>PF07509 DUF1523: Protein of unknown function (DUF1523); InterPro: IPR011088 This entry is represented by Bacteriophage phiNM3, A0EWY4 from SWISSPROT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are restricted to the Gammaproteobacteria and Epsilonproteobacteria, the function of these proteins is unknown.
Probab=22.59 E-value=4.3e+02 Score=21.54 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=22.6
Q ss_pred HHHHHHHheeeeEEecCCCCeEEEEEEEEEEEeecC
Q 047150 13 FAEFGSCIACFFMASKPPPPLISIKIAGIRQFGLGE 48 (195)
Q Consensus 13 i~l~gi~~lilwlv~rP~~P~f~v~~~~v~~fnl~~ 48 (195)
++++.++++.++=-..||.=...|.+..+.+.++++
T Consensus 10 ~~~~~l~~~~~lhY~lP~~dvvrItgtevkR~d~~~ 45 (175)
T PF07509_consen 10 LLLFWLVVAAFLHYTLPQYDVVRITGTEVKRMDLDK 45 (175)
T ss_pred HHHHHHHHHHHeeccCCcceEEEEeceEEEEecCCc
Confidence 333333444444445677777788888888887754
No 45
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=22.35 E-value=77 Score=19.86 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHheeeeEEecCC
Q 047150 6 FANKLETFAEFGSCIACFFMASKPP 30 (195)
Q Consensus 6 ~~~~l~~i~l~gi~~lilwlv~rP~ 30 (195)
+.++.+..+++|+...-+|.++.|.
T Consensus 6 ~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 6 VLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eHHHHHHHHHHHHHhhhhhheeCCC
Confidence 3455556788899999999999874
No 46
>PHA02902 putative IMV membrane protein; Provisional
Probab=22.19 E-value=23 Score=24.24 Aligned_cols=22 Identities=9% Similarity=-0.241 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHheeeeEEecCC
Q 047150 9 KLETFAEFGSCIACFFMASKPP 30 (195)
Q Consensus 9 ~l~~i~l~gi~~lilwlv~rP~ 30 (195)
+.++++++.++++++|.++|-.
T Consensus 6 fvi~~v~v~Ivclliya~YrR~ 27 (70)
T PHA02902 6 FVILAVIVIIFCLLIYAAYKRY 27 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677788889999888853
No 47
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.06 E-value=30 Score=26.51 Aligned_cols=24 Identities=4% Similarity=0.029 Sum_probs=10.2
Q ss_pred HHHHHheeeeEEecC-CCCeEEEEE
Q 047150 15 EFGSCIACFFMASKP-PPPLISIKI 38 (195)
Q Consensus 15 l~gi~~lilwlv~rP-~~P~f~v~~ 38 (195)
++|+++||+|++-|= +++...++.
T Consensus 77 vIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCC
Confidence 455667777887765 565565554
No 48
>PF06835 LptC: Lipopolysaccharide-assembly, LptC-related; InterPro: IPR010664 This family consists of several related groups of proteins one of which is the LptC family. LptC is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The cell envelope of Gram-negative bacteria consists of an inner (IM) and an outer membrane (OM) separated by an aqueous compartment, the periplasm, which contains the peptidoglycan layer. The OM is an asymmetric bilayer, with phospholipids in the inner leaflet and lipopolysaccharides (LPS) facing outward [, ]. The OM is an effective permeability barrier that protects the cells from toxic compounds, such as antibiotics and detergents, thus allowing bacteria to inhabit several different and often hostile environments. LPS is responsible for the permeability properties of the OM. LPS consists of the lipid A moiety (a glucosamine-based phospholipid) linked to the short core oligosaccharide and the distal O-antigen polysaccharide chain. The core oligosaccharide can be further divided into an inner core, composed of 3-deoxy-D-mannooctulosanate (KDO) and heptose, and an outer core, which has a somewhat variable structure. LPS is essential in most Gram-negative bacteria, with the notable exception of Neisseria meningitidis. The biogenesis of the OM implies that the individual components are transported from the site of synthesis to their final destination outside the IM by crossing both hydrophilic and hydrophobic compartments. The machinery and the energy source that drive this process are not yet fully understood. The lipid A-core moiety and the O-antigen repeat units are synthesized at the cytoplasmic face of the IM and are separately exported via two independent transport systems, namely, the O-antigen transporter Wzx (RfbX) [, ] and the ATP binding cassette (ABC) transporter MsbA that flips the lipid A-core moiety from the inner leaflet to the outer leaflet of the IM [, , ]. O-antigen repeat units are then polymerised in the periplasm by the Wzy polymerase and ligated to the lipid A-core moiety by the WaaL ligase [see, , ]. The LPS transport machinery is composed of LptA, LptB, LptC, LptD, LptE. This supported by the fact, that depletion of any of one of these proteins blocks the LPS assembly pathway and results in very similar OM biogenesis defects. Moreover, the location of at least one of these five proteins in every cellular compartment suggests a model for how the LPS assembly pathway is organised and ordered in space []. Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [].; PDB: 3MY2_A.
Probab=21.65 E-value=88 Score=23.83 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=0.0
Q ss_pred CeEEEEEEEEEEE
Q 047150 32 PLISIKIAGIRQF 44 (195)
Q Consensus 32 P~f~v~~~~v~~f 44 (195)
|.+.++++++.++
T Consensus 33 ~~~~~~~~~~~~~ 45 (176)
T PF06835_consen 33 PDYSIENFTLTQY 45 (176)
T ss_dssp -------------
T ss_pred CcEEEEeeEEEEE
Confidence 4445544444444
No 49
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=21.34 E-value=1.2e+02 Score=22.01 Aligned_cols=28 Identities=7% Similarity=-0.006 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHheeeeEEecCCCCe
Q 047150 6 FANKLETFAEFGSCIACFFMASKPPPPL 33 (195)
Q Consensus 6 ~~~~l~~i~l~gi~~lilwlv~rP~~P~ 33 (195)
+..+++++.++-++.+|.|.+.-=.+++
T Consensus 65 li~lls~v~IlVily~IyYFVILRer~~ 92 (101)
T PF06024_consen 65 LISLLSFVCILVILYAIYYFVILRERQK 92 (101)
T ss_pred HHHHHHHHHHHHHHhhheEEEEEecccc
Confidence 3444555544444544555444333333
No 50
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.10 E-value=55 Score=28.62 Aligned_cols=29 Identities=10% Similarity=-0.108 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHheeeeEEecCCCCeE
Q 047150 6 FANKLETFAEFGSCIACFFMASKPPPPLI 34 (195)
Q Consensus 6 ~~~~l~~i~l~gi~~lilwlv~rP~~P~f 34 (195)
++.+++++++++++.++.|+..||..|..
T Consensus 56 ia~~~~~l~l~~lig~~~~~~~r~f~~~r 84 (281)
T COG4395 56 IAAFLIFLLLITLIGFVIMLEMRFFDPYR 84 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 44556677788888888888887766643
No 51
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=20.52 E-value=47 Score=28.06 Aligned_cols=24 Identities=4% Similarity=-0.191 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHheeeeEEe
Q 047150 4 DLFANKLETFAEFGSCIACFFMAS 27 (195)
Q Consensus 4 ~l~~~~l~~i~l~gi~~lilwlv~ 27 (195)
+++..+++++++=.++.+++|++.
T Consensus 148 gll~~~~~laivRlilf~i~w~~~ 171 (224)
T PF03839_consen 148 GLLGLFFALAIVRLILFLITWFFT 171 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444455566667766
No 52
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=20.50 E-value=58 Score=23.68 Aligned_cols=16 Identities=6% Similarity=-0.359 Sum_probs=7.6
Q ss_pred HHHHHHHheeeeEEec
Q 047150 13 FAEFGSCIACFFMASK 28 (195)
Q Consensus 13 i~l~gi~~lilwlv~r 28 (195)
+++.+++.+++|+.++
T Consensus 77 ~~v~~lv~~l~w~f~~ 92 (96)
T PTZ00382 77 AVVGGLVGFLCWWFVC 92 (96)
T ss_pred hHHHHHHHHHhheeEE
Confidence 3444555455555443
Done!