Query 047150
Match_columns 195
No_of_seqs 109 out of 347
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:08:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 97.8 9.3E-05 3.2E-09 58.9 9.3 103 30-150 43-146 (174)
2 1xo8_A AT1G01470; structural g 97.5 2.6E-05 9E-10 60.5 1.6 104 30-151 20-124 (151)
3 3but_A Uncharacterized protein 96.5 0.01 3.5E-07 45.1 7.5 87 61-151 17-104 (136)
4 2knc_B Integrin beta-3; transm 44.3 9.6 0.00033 25.9 1.6 20 6-25 14-33 (79)
5 2k9j_B Integrin beta-3; transm 36.8 16 0.00055 21.8 1.6 18 8-25 15-32 (43)
6 3s8f_C Cytochrome C oxidase po 34.0 9.2 0.00031 22.0 0.1 16 10-25 9-24 (34)
7 2l6w_A Beta-type platelet-deri 31.8 14 0.00049 21.8 0.0 6 29-34 33-38 (39)
8 2k1a_A Integrin alpha-IIB; sin 25.0 24 0.00082 21.1 0.9 18 7-24 15-32 (42)
9 1nrp_R Receptor based peptide 23.9 20 0.0007 18.7 0.4 12 69-80 7-18 (26)
10 1nro_R Receptor based peptide 23.3 21 0.00072 18.8 0.3 10 69-78 7-16 (27)
11 2l8s_A Integrin alpha-1; trans 22.8 35 0.0012 21.5 1.4 27 6-32 13-41 (54)
12 3j1r_A Archaeal adhesion filam 20.8 30 0.001 18.4 0.6 15 11-25 11-25 (26)
13 2knc_A Integrin alpha-IIB; tra 20.5 42 0.0014 21.1 1.4 25 7-31 17-43 (54)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=97.83 E-value=9.3e-05 Score=58.86 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=75.3
Q ss_pred CCCeEEEEEEEEEEEeecCCCCCCccccceEEEEEEEEEEEecCCCeEEEEEcCCEEEEEECceeeccCCCCC-CcccCC
Q 047150 30 PPPLISIKIAGIRQFGLGEGVDSTGVATKILTSNCSVDLLVDNKSKLFGLHISPPVIDMSFGRLPIASSHGPK-LYAASH 108 (195)
Q Consensus 30 ~~P~f~v~~~~v~~fnl~~~~d~sg~~t~~l~~n~~~~v~~~NPN~~igI~Y~~~~~~v~Y~~~~la~~~lp~-FyQ~~k 108 (195)
++|++++.++++.+.++.. ..+.+++++.|||.. .|-++.++..++=+|..+++|..+. .--+.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~~-------------~~~~l~LrV~NPN~~-pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~ 108 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRDG-------------VDYHAKVSVKNPYSQ-SIPICQISYILKSATRTIASGTIPDPGSLVGS 108 (174)
T ss_dssp CCCEEEEEEEEEEEECSSS-------------EEEEEEEEEEECSSS-CCBCCSEEEEEEESSSCEEEEEESCCCBCCSS
T ss_pred CCCEEEEEEeEEeccccce-------------EEEEEEEEEECCCCC-CccccceEEEEEECCEEEEEEecCCCceECCC
Confidence 6899999999999877652 345577888999996 9999999999999999999998866 666888
Q ss_pred CeeEEEEEEEEeeeeccCccccchhhhhcCceEeEEEEEEEE
Q 047150 109 DSSLFRLYVGTRNKPMYGAGRNMQDLLELGKGLPLIIRMSFR 150 (195)
Q Consensus 109 n~t~v~~~l~g~~v~l~~~~~~l~~~~~~~g~V~l~l~~~~r 150 (195)
.++++.+.+.-.--.+ .+.+.+ .+..+.++-+|++...
T Consensus 109 g~~~v~Vpv~v~~~~l---~~~~~~-l~~~~~i~Y~L~g~L~ 146 (174)
T 1yyc_A 109 GTTVLDVPVKVAYSIA---VSLMKD-MCTDWDIDYQLDIGLT 146 (174)
T ss_dssp EEEEEEEEEEESHHHH---HHTCCC-CCSSEEECEEEEEEEE
T ss_pred CcEEEEEEEEEEHHHH---HHHHHh-cCCCCccceEEEEEEE
Confidence 9999998876542111 111221 2224567777766544
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.51 E-value=2.6e-05 Score=60.53 Aligned_cols=104 Identities=10% Similarity=0.056 Sum_probs=72.7
Q ss_pred CCCeEEEEEEEEEEEeecCCCCCCccccceEEEEEEEEEEEecCCCeEEEEEcCCEEEEEECceeeccCCCCC-CcccCC
Q 047150 30 PPPLISIKIAGIRQFGLGEGVDSTGVATKILTSNCSVDLLVDNKSKLFGLHISPPVIDMSFGRLPIASSHGPK-LYAASH 108 (195)
Q Consensus 30 ~~P~f~v~~~~v~~fnl~~~~d~sg~~t~~l~~n~~~~v~~~NPN~~igI~Y~~~~~~v~Y~~~~la~~~lp~-FyQ~~k 108 (195)
++|++++.++++.+.++. ...+.+++.+.|||.. .|.++.++..++=+|..+++|..+. .--+.+
T Consensus 20 ~~P~v~v~~v~~~~~~~~-------------~~~~~~~l~V~NPN~~-~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~ 85 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD-------------SVEYLAKVSVTNPYSH-SIPICEISFTFHSAGREIGKGKIPDPGSLKAK 85 (151)
T ss_dssp CSCCCBCSEEEECCCTTT-------------EECEEEEEEEECSSSS-CCCCEEEEEEEESSSSCEEEEEEEECCCCSSS
T ss_pred CCCEEEEEEeEEeccCcc-------------eeEEEEEEEEECCCCC-CcccccEEEEEEECCEEEEEEecCCCcEECCC
Confidence 689999998888866543 3456678888999996 8888888888877899999998755 666888
Q ss_pred CeeEEEEEEEEeeeeccCccccchhhhhcCceEeEEEEEEEEE
Q 047150 109 DSSLFRLYVGTRNKPMYGAGRNMQDLLELGKGLPLIIRMSFRT 151 (195)
Q Consensus 109 n~t~v~~~l~g~~v~l~~~~~~l~~~~~~~g~V~l~l~~~~rv 151 (195)
.++++.+.+...--.+ .+.+. +.+....++-++++...+
T Consensus 86 g~~~v~vpv~v~~~~l---~~~~~-~l~~~~~i~Y~l~g~l~i 124 (151)
T 1xo8_A 86 DMTALDIPVVVPYSIL---FNLAR-DVGVDWDIDYELQIGLTI 124 (151)
T ss_dssp SEEEEEECCCEEHHHH---HHHHH-HHHHHSEEEEEEEEEEEE
T ss_pred CcEEEEEEEEEEHHHH---HHHHH-hcccCCcccEEEEEEEEE
Confidence 8999888765542111 11122 222245677777665543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=96.46 E-value=0.01 Score=45.14 Aligned_cols=87 Identities=7% Similarity=0.047 Sum_probs=60.8
Q ss_pred EEEEEEEEEEecCCCeEEEEEcCCEEEEEECceeeccCC-CCCCcccCCCeeEEEEEEEEeeeeccCccccchhhhhcCc
Q 047150 61 TSNCSVDLLVDNKSKLFGLHISPPVIDMSFGRLPIASSH-GPKLYAASHDSSLFRLYVGTRNKPMYGAGRNMQDLLELGK 139 (195)
Q Consensus 61 ~~n~~~~v~~~NPN~~igI~Y~~~~~~v~Y~~~~la~~~-lp~FyQ~~kn~t~v~~~l~g~~v~l~~~~~~l~~~~~~~g 139 (195)
...+.+++.+.|||.. .+.++..+..++..|+.+|+|. ...+--++.+++++.+.+.-+.-.+... +.+..+++.
T Consensus 17 ~t~~~~~l~V~NPN~~-~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~---~~~hi~nge 92 (136)
T 3but_A 17 QTEIVALAKVRNEDVV-PIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREW---WVTHIANGE 92 (136)
T ss_dssp EEEEEEEEEEECCSSS-CEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTH---HHHHHHTTS
T ss_pred EEEEEEEEEEeCCCCc-ceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHH---HHHHhhcCC
Confidence 4567778889999985 9999999999999999999986 4667778888888988877664333221 222233222
Q ss_pred eEeEEEEEEEEE
Q 047150 140 GLPLIIRMSFRT 151 (195)
Q Consensus 140 ~V~l~l~~~~rv 151 (195)
.-.|++++++.+
T Consensus 93 ~s~l~i~~~~~l 104 (136)
T 3but_A 93 KTKIRVAIKPTI 104 (136)
T ss_dssp EEEEEEEEEEEE
T ss_pred ceEEEEEEEEEE
Confidence 445555555443
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=44.28 E-value=9.6 Score=25.87 Aligned_cols=20 Identities=5% Similarity=0.090 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHheeeeE
Q 047150 6 FANKLETFAEFGSCIACFFM 25 (195)
Q Consensus 6 ~~~~l~~i~l~gi~~lilwl 25 (195)
+..+++.++++|++++++|-
T Consensus 14 v~gvi~gilliGllllliwk 33 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445567888888888885
No 5
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=36.83 E-value=16 Score=21.84 Aligned_cols=18 Identities=6% Similarity=0.085 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHheeeeE
Q 047150 8 NKLETFAEFGSCIACFFM 25 (195)
Q Consensus 8 ~~l~~i~l~gi~~lilwl 25 (195)
.+++.++++|++++.+|=
T Consensus 15 gvi~~ivliGl~lLliwk 32 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIWK 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344557788998888873
No 6
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=34.01 E-value=9.2 Score=21.95 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=10.9
Q ss_pred HHHHHHHHHHheeeeE
Q 047150 10 LETFAEFGSCIACFFM 25 (195)
Q Consensus 10 l~~i~l~gi~~lilwl 25 (195)
++.++++|++++++|+
T Consensus 9 l~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 9 LAVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHH
Confidence 3456677777777775
No 7
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=31.83 E-value=14 Score=21.75 Aligned_cols=6 Identities=17% Similarity=0.185 Sum_probs=4.0
Q ss_pred CCCCeE
Q 047150 29 PPPPLI 34 (195)
Q Consensus 29 P~~P~f 34 (195)
=++|||
T Consensus 33 ~qKPrY 38 (39)
T 2l6w_A 33 QKKPRY 38 (39)
Confidence 367776
No 8
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=25.02 E-value=24 Score=21.06 Aligned_cols=18 Identities=6% Similarity=0.078 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHheeee
Q 047150 7 ANKLETFAEFGSCIACFF 24 (195)
Q Consensus 7 ~~~l~~i~l~gi~~lilw 24 (195)
.++++-+++++++++++|
T Consensus 15 ~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666677777777
No 9
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=23.87 E-value=20 Score=18.68 Aligned_cols=12 Identities=17% Similarity=0.276 Sum_probs=8.2
Q ss_pred EEecCCCeEEEE
Q 047150 69 LVDNKSKLFGLH 80 (195)
Q Consensus 69 ~~~NPN~~igI~ 80 (195)
..||||+|.-=+
T Consensus 7 llrnpndkyepf 18 (26)
T 1nrp_R 7 LLRNPNDKYEPF 18 (26)
T ss_pred hhcCCCcccCcc
Confidence 459999984433
No 10
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=23.26 E-value=21 Score=18.79 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=7.4
Q ss_pred EEecCCCeEE
Q 047150 69 LVDNKSKLFG 78 (195)
Q Consensus 69 ~~~NPN~~ig 78 (195)
..||||++.-
T Consensus 7 llrnpndkye 16 (27)
T 1nro_R 7 LLRNPNDKYE 16 (27)
T ss_pred cccCCCcccC
Confidence 4599999843
No 11
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=22.79 E-value=35 Score=21.49 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHheeee--EEecCCCC
Q 047150 6 FANKLETFAEFGSCIACFF--MASKPPPP 32 (195)
Q Consensus 6 ~~~~l~~i~l~gi~~lilw--lv~rP~~P 32 (195)
+.++++-+++++++++++| ..++-++|
T Consensus 13 i~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 3445556677777888888 45554443
No 12
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=20.82 E-value=30 Score=18.44 Aligned_cols=15 Identities=7% Similarity=0.022 Sum_probs=8.0
Q ss_pred HHHHHHHHHheeeeE
Q 047150 11 ETFAEFGSCIACFFM 25 (195)
Q Consensus 11 ~~i~l~gi~~lilwl 25 (195)
+++.++|.+++-+|+
T Consensus 11 Iviav~aaVllylW~ 25 (26)
T 3j1r_A 11 ILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 334455555666664
No 13
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.47 E-value=42 Score=21.10 Aligned_cols=25 Identities=8% Similarity=-0.051 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHheeee--EEecCCC
Q 047150 7 ANKLETFAEFGSCIACFF--MASKPPP 31 (195)
Q Consensus 7 ~~~l~~i~l~gi~~lilw--lv~rP~~ 31 (195)
.++++-+++++++++++| ..++-++
T Consensus 17 ~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 344555667777788888 4555444
Done!