BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047152
(776 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 146/479 (30%), Positives = 216/479 (45%), Gaps = 83/479 (17%)
Query: 242 EVIDLTENNLTNS-VYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNE 300
EV+DL+ N+++ + V W+ + + +++ N++ G + R V+L +LD+SSN
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNN 211
Query: 301 L-RGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP 359
GIP FLG+ L+ L +SG +L G S I S CT+ L+ L++SSN+ G +P
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI----STCTE--LKLLNISSNQFVGPIP 264
Query: 360 NLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAL 419
L L L+ L L N G I + L L L
Sbjct: 265 PL-------------------------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 420 DLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRML-- 477
DL+ N + +PPF G C + + N+ +L +L
Sbjct: 300 DLSGNHF-----YGAVPPF------FGSCSL------LESLALSSNNFSGELPMDTLLKM 342
Query: 478 -----LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFS 532
L+LS N+ G++P+ S +D+SSN+F GPI P NL +N
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP--------NLCQNP-- 392
Query: 533 GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHN 592
N L L L NN +GK+P LV L+L+ N G IP+S+G L
Sbjct: 393 ---------KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 593 IRSLSLY-NRSQYEYKSTLGLVKILD---LSSNKLGGGVPKEIMDLVGLVALNLSRNNLT 648
+R L L+ N + E L VK L+ L N L G +P + + L ++LS N LT
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 649 GQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQS 707
G+I IG+L++L L LS N F G IP+ L L +DL+ N +G IP QS
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 142/514 (27%), Positives = 214/514 (41%), Gaps = 71/514 (13%)
Query: 242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301
+ + L EN T + +L +L + L N G++P FG L L LSSN
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTG-LDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 302 RG-IP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGS-M 358
G +P L M GLK+L LS E G+L E + +LS+ SL L LSSN +G +
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA-----SLLTLDLSSNNFSGPIL 385
Query: 359 PNLGE--FSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRL 416
PNL + ++L++ G I ++ +L L L+ N L G I +L S LS+L
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKL 444
Query: 417 AALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRM 476
L L N L E + + L T+ L + P L + NW
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL-NW--------- 494
Query: 477 LLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSIS 536
++LS+N++ G++P R + N L LS N FSG+I
Sbjct: 495 -ISLSNNRLTGEIPKWIGRLE----------------------NLAILKLSNNSFSGNIP 531
Query: 537 FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNS--MGFLHNIR 594
LI+LDL+ NL +G +P F+ + N + I N H
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 595 SLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPK 654
+L + + E + L +++S GG + ++ L++S N L+G I +
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 655 IGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGT----------- 703
IG + L L+L N G IP + L GL+++DLS N L G+IP
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 704 -------------QLQSFNELVYAGNPELCGLPL 724
Q ++F + NP LCG PL
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 139/470 (29%), Positives = 203/470 (43%), Gaps = 104/470 (22%)
Query: 316 ILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITG---SMPNLGEFSSLK--QX 370
L+LS + G +S F C+ SL L LS N ++G ++ +LG S LK
Sbjct: 81 SLFLSNSHINGSVSGF------KCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133
Query: 371 XXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGG--VISEALFSNLSRLAALDLADNSLT- 427
G + + +L LE+L L+ NS+ G V+ L L L ++ N ++
Sbjct: 134 SSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192
Query: 428 ---------LEFSHDWIPPFQLNTISLGHC-----------KMGPRFPKWLQTQNTVPNW 467
LEF F LG C K+ F + + T
Sbjct: 193 DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST------- 245
Query: 468 FWDLTHQRMLLNLSSNQMRGKVPDLSL-----------RFDISGP-----------GIDI 505
+ LLN+SSNQ G +P L L +F P G+D+
Sbjct: 246 ----CTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301
Query: 506 SSNHFEGPIPP---------------------LPSNA-------TSLNLSKNKFSGSI-S 536
S NHF G +PP LP + L+LS N+FSG +
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 537 FLCSLSNRLIYLDLSNNLLSGK-LPD-CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIR 594
L +LS L+ LDLS+N SG LP+ C ++L L L NN F GKIP ++ +
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 595 SLSL-YNRSQYEYKSTLG-LVKILDLS--SNKLGGGVPKEIMDLVGLVALNLSRNNLTGQ 650
SL L +N S+LG L K+ DL N L G +P+E+M + L L L N+LTG+
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Query: 651 ITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP 700
I + +L+++ LS N+ G IP + +L L+++ LS N+ SG IP
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 81 RTGHVNKLDLQ-PIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFXXXXXXX 139
R+ +N+L + P S G +P + +LD+S N SG IP+
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYL 658
Query: 140 XXXXXXXAEFAGPIPHQLGNLSRLQFLDLSFNNL 173
+ +G IP ++G+L L LDLS N L
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 613 VKILDLSSN------KLGGGVPKEIMDLVGLVALNLSRNNLTGQI-TPKIGQLKSLDFLD 665
+K L++SSN K+ GG+ ++++ L A ++S N+ G + + G+LK L
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLA 184
Query: 666 LSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716
+S N+ G + +S+ L +D+S NN S IP + L +GN
Sbjct: 185 ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 233
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 93 IGFDSFPLRGKITPALLKLQ-HLTYLDLSRNNFSGSSIPEFXXXXXXXXXXXXXXAE-FA 150
+ F+ F G++ +L L L LDLS NNFSG +P F
Sbjct: 350 LSFNEF--SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 151 GPIPHQLGNLSRLQFLDLSFNNL 173
G IP L N S L L LSFN L
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYL 430
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 78 CSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFXXXXX 137
C + +L LQ GF GKI P L L L LS N SG +IP
Sbjct: 389 CQNPKNTLQELYLQNNGF-----TGKIPPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLS 442
Query: 138 XXXXXXXXXAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGE---------NLDW 181
G IP +L + L+ L L FN+L +GE NL+W
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNW 494
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 100 LRGKITPALLKLQHLTYLDLSRNNFSGSSIPEF 132
L G+I A+ L LT +DLS NN SG IPE
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSG-PIPEM 723
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 100 LRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFXXXXXXXXXXXXXXAEFAGPIPHQLGN 159
L G I + + +L L+L N+ SGS IP+ + G IP +
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 160 LSRLQFLDLSFNNL 173
L+ L +DLS NNL
Sbjct: 703 LTMLTEIDLSNNNL 716
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 146/479 (30%), Positives = 217/479 (45%), Gaps = 83/479 (17%)
Query: 242 EVIDLTENNLTNS-VYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNE 300
EV+DL+ N+++ + V W+ + + +++ N++ G + + R V+L +LD+SSN
Sbjct: 151 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNN 208
Query: 301 LR-GIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP 359
GIP FLG+ L+ L +SG +L G S I S CT+ L+ L++SSN+ G +P
Sbjct: 209 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI----STCTE--LKLLNISSNQFVGPIP 261
Query: 360 NLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAAL 419
L L L+ L L N G I + L L L
Sbjct: 262 PL-------------------------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 420 DLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRML-- 477
DL+ N + +PPF G C + + N+ +L +L
Sbjct: 297 DLSGNHF-----YGAVPPF------FGSCSL------LESLALSSNNFSGELPMDTLLKM 339
Query: 478 -----LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFS 532
L+LS N+ G++P+ S +D+SSN+F GPI P NL +N
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP--------NLCQNP-- 389
Query: 533 GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHN 592
N L L L NN +GK+P LV L+L+ N G IP+S+G L
Sbjct: 390 ---------KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 593 IRSLSLY-NRSQYEYKSTLGLVKILD---LSSNKLGGGVPKEIMDLVGLVALNLSRNNLT 648
+R L L+ N + E L VK L+ L N L G +P + + L ++LS N LT
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 649 GQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQS 707
G+I IG+L++L L LS N F G IP+ L L +DL+ N +G IP QS
Sbjct: 501 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 142/514 (27%), Positives = 214/514 (41%), Gaps = 71/514 (13%)
Query: 242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301
+ + L EN T + +L +L + L N G++P FG L L LSSN
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTG-LDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 302 RG-IP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGS-M 358
G +P L M GLK+L LS E G+L E + +LS+ SL L LSSN +G +
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA-----SLLTLDLSSNNFSGPIL 382
Query: 359 PNLGE--FSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRL 416
PNL + ++L++ G I ++ +L L L+ N L G I +L S LS+L
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKL 441
Query: 417 AALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRM 476
L L N L E + + L T+ L + P L + NW
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL-NW--------- 491
Query: 477 LLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSIS 536
++LS+N++ G++P R + N L LS N FSG+I
Sbjct: 492 -ISLSNNRLTGEIPKWIGRLE----------------------NLAILKLSNNSFSGNIP 528
Query: 537 FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNS--MGFLHNIR 594
LI+LDL+ NL +G +P F+ + N + I N H
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 588
Query: 595 SLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPK 654
+L + + E + L +++S GG + ++ L++S N L+G I +
Sbjct: 589 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 648
Query: 655 IGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGT----------- 703
IG + L L+L N G IP + L GL+++DLS N L G+IP
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 704 -------------QLQSFNELVYAGNPELCGLPL 724
Q ++F + NP LCG PL
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 139/470 (29%), Positives = 203/470 (43%), Gaps = 104/470 (22%)
Query: 316 ILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITG---SMPNLGEFSSLK--QX 370
L+LS + G +S F C+ SL L LS N ++G ++ +LG S LK
Sbjct: 78 SLFLSNSHINGSVSGF------KCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 130
Query: 371 XXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGG--VISEALFSNLSRLAALDLADNSLT- 427
G + + +L LE+L L+ NS+ G V+ L L L ++ N ++
Sbjct: 131 SSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 189
Query: 428 ---------LEFSHDWIPPFQLNTISLGHC-----------KMGPRFPKWLQTQNTVPNW 467
LEF F LG C K+ F + + T
Sbjct: 190 DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST------- 242
Query: 468 FWDLTHQRMLLNLSSNQMRGKVPDLSL-----------RFDISGP-----------GIDI 505
+ LLN+SSNQ G +P L L +F P G+D+
Sbjct: 243 ----CTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 298
Query: 506 SSNHFEGPIPP---------------------LPSNA-------TSLNLSKNKFSGSI-S 536
S NHF G +PP LP + L+LS N+FSG +
Sbjct: 299 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Query: 537 FLCSLSNRLIYLDLSNNLLSGK-LPD-CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIR 594
L +LS L+ LDLS+N SG LP+ C ++L L L NN F GKIP ++ +
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 595 SLSL-YNRSQYEYKSTLG-LVKILDLS--SNKLGGGVPKEIMDLVGLVALNLSRNNLTGQ 650
SL L +N S+LG L K+ DL N L G +P+E+M + L L L N+LTG+
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 478
Query: 651 ITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP 700
I + +L+++ LS N+ G IP + +L L+++ LS N+ SG IP
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 613 VKILDLSSN------KLGGGVPKEIMDLVGLVALNLSRNNLTGQI-TPKIGQLKSLDFLD 665
+K L++SSN K+ GG+ ++++ L A ++S N+ G + + G+LK L
Sbjct: 125 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLA 181
Query: 666 LSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716
+S N+ G + +S+ L +D+S NN S IP + L +GN
Sbjct: 182 ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 230
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 81 RTGHVNKLDLQ-PIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFXXXXXXX 139
R+ +N+L + P S G +P + +LD+S N SG IP+
Sbjct: 597 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYL 655
Query: 140 XXXXXXXAEFAGPIPHQLGNLSRLQFLDLSFNNL 173
+ +G IP ++G+L L LDLS N L
Sbjct: 656 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 93 IGFDSFPLRGKITPALLKLQ-HLTYLDLSRNNFSGSSIPEFXXXXXXXXXXXXXXAE-FA 150
+ F+ F G++ +L L L LDLS NNFSG +P F
Sbjct: 347 LSFNEF--SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 151 GPIPHQLGNLSRLQFLDLSFNNL 173
G IP L N S L L LSFN L
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYL 427
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 78 CSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFXXXXX 137
C + +L LQ GF GKI P L L L LS N SG +IP
Sbjct: 386 CQNPKNTLQELYLQNNGF-----TGKIPPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLS 439
Query: 138 XXXXXXXXXAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGE---------NLDW 181
G IP +L + L+ L L FN+L +GE NL+W
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNW 491
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 100 LRGKITPALLKLQHLTYLDLSRNNFSGSSIPEF 132
L G+I A+ L LT +DLS NN SG IPE
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSG-PIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 10/225 (4%)
Query: 508 NHFEGPIPPLPSNATSLN---LSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF 564
N+ GPIPP + T L+ ++ SG+I S L+ LD S N LSG LP
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 565 QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYK-----STLGLVKILDLS 619
+LV + N G IP+S G + + +R++ K + L L +DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLS 205
Query: 620 SNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSL 679
N L G ++L++N+L + K+G K+L+ LDL N+ +G +P L
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 680 SQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPL 724
+QL L +++S+NNL G+IP G LQ F+ YA N LCG PL
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 62/154 (40%), Gaps = 31/154 (20%)
Query: 36 CIDEEREALLTFKASLVDESGILSSWRREDEKRDCCK--WTGVGCSK--RTGHVNKLDLQ 91
C ++++ALL K L + + LSSW DCC W GV C +T VN LDL
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58
Query: 92 ----------PIGFDSFP------------LRGKITPALLKLQHLTYLDLSRNNFSGSSI 129
P + P L G I PA+ KL L YL ++ N SG +I
Sbjct: 59 GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AI 117
Query: 130 PEFXXXXXXXXXXXXXXAEFAGPIPHQLGNLSRL 163
P+F +G +P + +L L
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 109/283 (38%), Gaps = 67/283 (23%)
Query: 304 IPKFLGNMCGLKILYLSG-KELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-L 361
IP L N+ L LY+ G L G + I L+ L +L+++ ++G++P+ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ------LHYLYITHTNVSGAIPDFL 121
Query: 362 GEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDL 421
+ +L GT+ SI L L + +GN + G I ++ S ++ +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 422 ADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLS 481
+ N LT +P F +L ++LS
Sbjct: 182 SRNRLT----------------------------------GKIPPTFANL--NLAFVDLS 205
Query: 482 SNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSL 541
N + G D S+ F G D N ++L+KN + + + L
Sbjct: 206 RNMLEG---DASVLF-----GSD--------------KNTQKIHLAKNSLAFDLGKV-GL 242
Query: 542 SNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIP 584
S L LDL NN + G LP Q L LN++ NN G+IP
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 248 ENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKF 307
+ N + P + S L +++ N+L G IP F + +L ++DLS N L G
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV 215
Query: 308 L-GNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP 359
L G+ + ++L+ L L + G +KN L L L +N I G++P
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKV------GLSKN-LNGLDLRNNRIYGTLP 261
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 11/210 (5%)
Query: 495 RFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNL 554
R SG I +S +PS+AT L L NK + +L L LS+N
Sbjct: 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63
Query: 555 LSGKLPDCWFQFD----SLVILNLANNNFFGKIPNSMGFLH----NIRSLSLYNRSQYEY 606
LS K C Q D SL L+L+ N N +G + + +L S++
Sbjct: 64 LSFK--GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121
Query: 607 KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKI-GQLKSLDFLD 665
+L + LD+S L L L ++ N+ P I +L++L FLD
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 666 LSRNQFFGGIPSSLSQLSGLSVMDLSYNNL 695
LS+ Q P++ + LS L V+++S+NN
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 243 VIDLTENNLTNSVYPW----LFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSS 298
++DL+ NNL+ W L N+ S L L N L EAF + +LRYLDLSS
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLL-----LSHNHLNFISSEAFVPVPNLRYLDLSS 97
Query: 299 NELRGIPKFL-GNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEIT 355
N L + +FL ++ L++L L + +D++ L+ L+LS N+I+
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA------QLQKLYLSQNQIS 149
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 93/400 (23%), Positives = 165/400 (41%), Gaps = 30/400 (7%)
Query: 288 MVSLRYLDLSSNELRGIP--KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLE 345
M SLR+LDLS N+ +P K GN+ L L LS + + + L C L
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179
Query: 346 WLHLSSNEITG-SMPNLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGV 404
H+ E +PN + ++G L +L +KLN + +
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL-QLSNIKLNDENCQRL 238
Query: 405 ISEALFSNLSR---LAALDLADNSLTLE-----FSHDWIPPFQ-LNTISLGHCKMGPRFP 455
++ S L+R L + L T + F W P + LN +L + R
Sbjct: 239 MT--FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR-E 295
Query: 456 KWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPI- 514
++ ++ + + + ++ L S + +++++ + IS F +
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKM------LSISDTPFIHMVC 348
Query: 515 PPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSG--KLPDCWFQFDSLVIL 572
PP PS+ T LN ++N F+ S+ CS RL L L N L K+ SL L
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408
Query: 573 NLANNNFFGKIPN-SMGFLHNIRSLSLYNR--SQYEYKSTLGLVKILDLSSNKLGGGVPK 629
+++ N+ + + + +I L+L + + ++ VK+LDL +N++ +PK
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI-MSIPK 467
Query: 630 EIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRN 669
++ L L LN++ N L +L SL ++ L N
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301
E +D++ N+L + Y + S++ ++L SN L GS+ V + LDL +N +
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESIL-VLNLSSNMLTGSVFRCLPPKV--KVLDLHNNRI 462
Query: 302 RGIPKFLGNMCGLKILYLSGKELKG 326
IPK + ++ L+ L ++ +LK
Sbjct: 463 MSIPKDVTHLQALQELNVASNQLKS 487
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 243 VIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR 302
V++L+ N LT SV+ L V + L +N++ SIP+ + +L+ L+++SN+L+
Sbjct: 432 VLNLSSNMLTGSVFRCL----PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486
Query: 303 GIP 305
+P
Sbjct: 487 SVP 489
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 114/469 (24%), Positives = 183/469 (39%), Gaps = 77/469 (16%)
Query: 267 VDRISLPSNQLQG-SIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELK 325
+ +++ N +Q +PE F + +L +LDLSSN+++ I L++L+
Sbjct: 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNL 204
Query: 326 GQLS-----EFIQ-------DLSSGCTKNSLEWLHLSSNEITG------SMPNLGEFSSL 367
FIQ L +N+ + L++ I G LGEF +
Sbjct: 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 264
Query: 368 KQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
+ + F+L L L G+I LF+ L+ +++ L S+T
Sbjct: 265 GNLEKFDKSALEGLCNLTIEEFRLAYLDY---YLDGIID--LFNCLTNVSSFSLV--SVT 317
Query: 428 LEFSHDWIPPFQLNTISLGHCKMGPRFP--------KWLQTQNTVPNWFWDLTHQRM-LL 478
+E D+ F + L +CK G +FP + T N N F ++ + L
Sbjct: 318 IERVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 376
Query: 479 NLSSNQMRGK-------VPDLSLRF-DISGPGIDISSNHFEG--PIPPLPSNATSLNLSK 528
+LS N + K +SL++ D+S G+ S++F G + L ++L
Sbjct: 377 DLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL---- 432
Query: 529 NKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMG 588
K S SL N LIYLD+S+ + SL +L +A N+F
Sbjct: 433 -KQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF------QEN 484
Query: 589 FLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLT 648
FL +I + L + LDLS +L P L L LN+S NN
Sbjct: 485 FLPDIF-------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531
Query: 649 GQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQL-SGLSVMDLSYNNLS 696
T L SL LD S N L S L+ ++L+ N+ +
Sbjct: 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 11/160 (6%)
Query: 545 LIYLDLSNNLLSGKLPDCWFQFD----SLVILNLANNNFFGKIPNSMGFLH----NIRSL 596
L +LDLS N LS K C Q D SL L+L+ N N +G + +
Sbjct: 349 LEFLDLSRNGLSFK--GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 597 SLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKI- 655
+L S++ +L + LD+S L L L ++ N+ P I
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 656 GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNL 695
+L++L FLDLS+ Q P++ + LS L V+++S+NN
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 113/469 (24%), Positives = 181/469 (38%), Gaps = 77/469 (16%)
Query: 267 VDRISLPSNQLQG-SIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELK 325
+ +++ N +Q +PE F + +L +LDLSSN+++ I L++L+
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-----CTDLRVLHQMPLLNL 180
Query: 326 GQLS-----EFIQ-------DLSSGCTKNSLEWLHLSSNEITG------SMPNLGEFSSL 367
FIQ L +N+ + L++ I G LGEF +
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 368 KQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
+ + F+L L L +I LF+ L+ +++ L S+T
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDY---YLDDIID--LFNCLTNVSSFSLV--SVT 293
Query: 428 LEFSHDWIPPFQLNTISLGHCKMGPRFP--------KWLQTQNTVPNWFWDLTHQRM-LL 478
+E D+ F + L +CK G +FP + T N N F ++ + L
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352
Query: 479 NLSSNQMRGK-------VPDLSLRF-DISGPGIDISSNHFEG--PIPPLPSNATSLNLSK 528
+LS N + K SL++ D+S G+ S++F G + L ++L
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL---- 408
Query: 529 NKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMG 588
K S SL N LIYLD+S+ + SL +L +A N+F
Sbjct: 409 -KQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF------QEN 460
Query: 589 FLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLT 648
FL +I + L + LDLS +L P L L LN+S NN
Sbjct: 461 FLPDIF-------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 649 GQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQL-SGLSVMDLSYNNLS 696
T L SL LD S N L S L+ ++L+ N+ +
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query: 269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYLSGKELKG- 326
++ L SN+L +AF R+ LR L L+ N+L+ +P + L+ L+++ +L+
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 327 -------------------QLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN--LGEFS 365
QL + TK L +L L NE+ S+P + +
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK--LTYLSLGYNELQ-SLPKGVFDKLT 157
Query: 366 SLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADN 424
SLK+ + +L +L+ LKL+ N L V E F +L +L L L +N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQEN 215
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 242 EVIDLTENNLTN---SVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSS 298
E + +T+N L V+ L N++ +DR NQL+ P F + L YL L
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDR-----NQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 299 NELRGIPK-FLGNMCGLKILYLSGKELK 325
NEL+ +PK + LK L L +LK
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLK 170
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 48/187 (25%)
Query: 250 NLTNSVYPWLFNVSSSLVD---------RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNE 300
NLTN LFN + +D R+ L SN + S A + SL+ L+ SSN+
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFSSNQ 162
Query: 301 LRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN 360
+ + K L N+ L+ L +S + + D+S +LE L ++N+I+ P
Sbjct: 163 VTDL-KPLANLTTLERLDISSNK--------VSDISVLAKLTNLESLIATNNQISDITP- 212
Query: 361 LGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALD 420
+G L L+ L LNGN L + ++L+ L LD
Sbjct: 213 ------------------------LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLD 245
Query: 421 LADNSLT 427
LA+N ++
Sbjct: 246 LANNQIS 252
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 616 LDLSSNKLGG-GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGG 674
LD+SSNK+ V ++ +L L+A NN ITP +G L +LD L L+ NQ
Sbjct: 178 LDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LGILTNLDELSLNGNQLKD- 231
Query: 675 IPSSLSQLSGLSVMDLSYNNLSGKIPLG 702
+L+ L+ L+ +DL+ N +S PL
Sbjct: 232 -IGTLASLTNLTDLDLANNQISNLAPLS 258
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 616 LDLSSNKLGG-GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGG 674
LD+SSNK+ V ++ +L L+A NN ITP +G L +LD L L+ NQ
Sbjct: 178 LDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LGILTNLDELSLNGNQLKD- 231
Query: 675 IPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716
+L+ L+ L+ +DL+ N +S PL + L EL N
Sbjct: 232 -IGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGAN 271
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 49/196 (25%)
Query: 242 EVIDLTE-NNLTNSVYPWLFNVSSSLVD---------RISLPSNQLQGSIPEAFGRMVSL 291
++ D+T NLTN LFN + +D R+ L SN + S A + SL
Sbjct: 96 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSL 153
Query: 292 RYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS 351
+ L SSN++ + K L N+ L+ L +S + + D+S +LE L ++
Sbjct: 154 QQLSFSSNQVTDL-KPLANLTTLERLDISSNK--------VSDISVLAKLTNLESLIATN 204
Query: 352 NEITGSMPNLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFS 411
N+I+ P +G L L+ L LNGN L + +
Sbjct: 205 NQISDITP-------------------------LGILTNLDELSLNGNQLKDI---GTLA 236
Query: 412 NLSRLAALDLADNSLT 427
+L+ L LDLA+N ++
Sbjct: 237 SLTNLTDLDLANNQIS 252
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 616 LDLSSNKLGG-GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGG 674
LD+SSNK+ V ++ +L L+A NN ITP +G L +LD L L+ NQ
Sbjct: 177 LDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LGILTNLDELSLNGNQLKD- 230
Query: 675 IPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716
+L+ L+ L+ +DL+ N +S PL + L EL N
Sbjct: 231 -IGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGAN 270
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 18/158 (11%)
Query: 270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLS 329
++L +NQ+ P + +L L+LSSN + I G + L+ L +
Sbjct: 112 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG-LTSLQQLNFGNQ------- 161
Query: 330 EFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQXXXXXXXXXGTIHKSIGQLF 389
+ DL +LE L +SSN+++ + L + ++L+ +G L
Sbjct: 162 --VTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDI--TPLGILT 216
Query: 390 KLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
L+ L LNGN L + ++L+ L LDLA+N ++
Sbjct: 217 NLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQIS 251
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 616 LDLSSNKLGG-GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGG 674
LD+SSNK+ V ++ +L L+A NN ITP +G L +LD L L+ NQ
Sbjct: 178 LDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LGILTNLDELSLNGNQLKD- 231
Query: 675 IPSSLSQLSGLSVMDLSYNNLSGKIPLG 702
+L+ L+ L+ +DL+ N +S PL
Sbjct: 232 -IGTLASLTNLTDLDLANNQISNLAPLS 258
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 48/187 (25%)
Query: 250 NLTNSVYPWLFNVSSSLVD---------RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNE 300
NLTN LFN + +D R+ L SN + S A + SL+ L SSN+
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQ 162
Query: 301 LRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN 360
+ + K L N+ L+ L +S + + D+S +LE L ++N+I+ P
Sbjct: 163 VTDL-KPLANLTTLERLDISSNK--------VSDISVLAKLTNLESLIATNNQISDITP- 212
Query: 361 LGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALD 420
+G L L+ L LNGN L + ++L+ L LD
Sbjct: 213 ------------------------LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLD 245
Query: 421 LADNSLT 427
LA+N ++
Sbjct: 246 LANNQIS 252
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 616 LDLSSNKLGG-GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGG 674
LD+SSNK+ V ++ +L L+A NN ITP +G L +LD L L+ NQ
Sbjct: 177 LDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LGILTNLDELSLNGNQLKD- 230
Query: 675 IPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716
+L+ L+ L+ +DL+ N +S PL + L EL N
Sbjct: 231 -IGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGAN 270
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 283 EAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342
+ + +L L+LSSN + I G + L+ L + + DL
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSG-LTSLQQLNFGNQ---------VTDLKPLANLT 172
Query: 343 SLEWLHLSSNEITGSMPNLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLG 402
+LE L +SSN+++ + L + ++L+ +G L L+ L LNGN L
Sbjct: 173 TLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLK 229
Query: 403 GVISEALFSNLSRLAALDLADNSLT 427
+ ++L+ L LDLA+N ++
Sbjct: 230 DI---GTLASLTNLTDLDLANNQIS 251
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 616 LDLSSNKLGG-GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGG 674
LD+SSNK+ V ++ +L L+A NN ITP +G L +LD L L+ NQ
Sbjct: 182 LDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LGILTNLDELSLNGNQLKD- 235
Query: 675 IPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716
+L+ L+ L+ +DL+ N +S PL + L EL N
Sbjct: 236 -IGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGAN 275
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 283 EAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342
+ + +L L+LSSN + I G + L+ L + + DL
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSG-LTSLQQLSFGNQ---------VTDLKPLANLT 177
Query: 343 SLEWLHLSSNEITGSMPNLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLG 402
+LE L +SSN+++ + L + ++L+ +G L L+ L LNGN L
Sbjct: 178 TLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLK 234
Query: 403 GVISEALFSNLSRLAALDLADNSLT 427
+ ++L+ L LDLA+N ++
Sbjct: 235 DI---GTLASLTNLTDLDLANNQIS 256
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 616 LDLSSNKLGG-GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGG 674
LD+SSNK+ V ++ +L L+A NN ITP +G L +LD L L+ NQ
Sbjct: 181 LDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LGILTNLDELSLNGNQLKD- 234
Query: 675 IPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716
+L+ L+ L+ +DL+ N +S PL + L EL N
Sbjct: 235 -IGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGAN 274
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 283 EAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342
+ + +L L+LSSN + I G + L+ L + + DL
Sbjct: 127 DPLKNLTNLNRLELSSNTISDISALSG-LTSLQQLSFGNQ---------VTDLKPLANLT 176
Query: 343 SLEWLHLSSNEITGSMPNLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLG 402
+LE L +SSN+++ + L + ++L+ +G L L+ L LNGN L
Sbjct: 177 TLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLK 233
Query: 403 GVISEALFSNLSRLAALDLADNSLT 427
+ ++L+ L LDLA+N ++
Sbjct: 234 DI---GTLASLTNLTDLDLANNQIS 255
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
Query: 610 LGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRN 669
L +++L L+ N L P L L L+L+ N LT + +L+ LD+SRN
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDLPANLEILDISRN 536
Query: 670 QFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCP 729
Q P LSV+D+++N + L T + N N + G P C
Sbjct: 537 QLLAPNPDV---FVSLSVLDITHNKFICECELSTFINWLNH----TNVTIAGPPADIYCV 589
Query: 730 DEDS 733
DS
Sbjct: 590 YPDS 593
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%)
Query: 609 TLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSR 668
TL +K+L+L+ NK+ + L L LNLS N L + L + ++DL +
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 669 NQFFGGIPSSLSQLSGLSVMDLSYNNLS 696
N + L L +DL N L+
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT 375
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 544 RLIYLDLSNNLLSGKLPDCWFQ-FDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRS 602
+L LD++ L K P FQ L +LNL++ + + L ++R L+L S
Sbjct: 400 QLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNS 459
Query: 603 -------QYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKI 655
+ +G ++IL LSS L + L + L+LS N+LTG +
Sbjct: 460 FQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDAL 519
Query: 656 GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNL 695
LK L +L+++ N P L LS S+++LS+N L
Sbjct: 520 SHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 55/229 (24%)
Query: 245 DLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI 304
D + LT++ + L ++S V+ I+L ++ F ++ LDL++ L G+
Sbjct: 236 DTDDQYLTSATFEGLCDMS---VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGL 292
Query: 305 PKFLGNMCGLKILYLSGKE-------------------LKGQLSEFIQDLSSGCTKN--S 343
P + M LK L L+ +KG + + DL + C + +
Sbjct: 293 PSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKL--DLGTRCLEKLEN 350
Query: 344 LEWLHLSSNEITGSMPNLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGG 403
L+ L LS ++I S + + L L+ L L+ N G
Sbjct: 351 LQKLDLSHSDIEAS---------------------DCCNLQLKNLRHLQYLNLSYNEPLG 389
Query: 404 VISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQ----LNTISLGHC 448
+ +A F +L LD+A L ++ H PFQ L ++L HC
Sbjct: 390 LEDQA-FKECPQLELLDVAFTHLHVKAPHS---PFQNLHLLRVLNLSHC 434
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 8/156 (5%)
Query: 548 LDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYK 607
LDL N + D + F L L L N P + L N+R+L L RS
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL--RSNRLKL 94
Query: 608 STLGL------VKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSL 661
LG+ + LD+S NK+ + DL L +L + N+L L SL
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 662 DFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG 697
+ L L + +LS L GL V+ L + N++
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 6/156 (3%)
Query: 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNN 578
SN T L++S+NK + ++ L L++ +N L + +SL L L N
Sbjct: 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163
Query: 579 FFGKIPNSMGFLH-----NIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMD 633
++ LH +R L++ Y +K L +K+L++S + +
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR-LYRLKVLEISHWPYLDTMTPNCLY 222
Query: 634 LVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRN 669
+ L +L+++ NLT + L L FL+LS N
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 574 LANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKI--LDLSSNKLGGGVPKEI 631
+ANN+ + + +L N+R L+L ++ + L + L L+ N+L +P +
Sbjct: 47 IANNSDIKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGV 104
Query: 632 MD-LVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDL 690
D L L L L N L +L +L +L+L+ NQ +L+ L+ +DL
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 691 SYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPL 724
SYN QLQS E V+ +L L L
Sbjct: 165 SYN----------QLQSLPEGVFDKLTQLKDLRL 188
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 251 LTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPE-AFGRMVSLRYLDLSSNELRGIPK-FL 308
L N V+ L N+ + L NQLQ S+P+ F ++ +L YL+L+ N+L+ +PK
Sbjct: 100 LPNGVFDKLTNLK-----ELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153
Query: 309 GNMCGLKILYLSGKELK 325
+ L L LS +L+
Sbjct: 154 DKLTNLTELDLSYNQLQ 170
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYLSGKELK 325
++L NQLQ F ++ +L LDLS N+L+ +P+ + LK L L +LK
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 613 VKILDLSSNKLGGGVPKEIMD-LVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQF 671
+K L L N+L +P + D L L LNL+ N L +L +L LDLS NQ
Sbjct: 111 LKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 672 FG---GIPSSLSQLSGLSVMDLSYNNLSGKIPLGT--QLQSFNELVYAGNPELCGLP 723
G+ L+QL L + Y N +P G +L S + NP C P
Sbjct: 170 QSLPEGVFDKLTQLKDLRL----YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 259 LFNVSSSL-----VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCG 313
+FN+S+++ + R+ L N L +P + +LR LDLS N L +P LG+
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294
Query: 314 LKILYL 319
LK Y
Sbjct: 295 LKYFYF 300
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLS 329
+ L N+L S+P G L+Y N + +P GN+C L+ L + G L+ Q
Sbjct: 275 LDLSHNRL-TSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333
Query: 330 EFIQDLS 336
+ + + S
Sbjct: 334 KILTEKS 340
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 87/202 (43%), Gaps = 22/202 (10%)
Query: 504 DISSNHFEGPIPPLPSNATSLNLSKNKFS--GSISFLCSLSNRLIYLDLSNNLLSGKLPD 561
DISS +G + SLNL +++FS S +F C +L LDL+ L G LP
Sbjct: 239 DISSAMLKGLCE---MSVESLNLQEHRFSDISSTTFQCF--TQLQELDLTATHLKG-LPS 292
Query: 562 CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS-LYNRSQYEYK-------STLGLV 613
+ L L L+ N+F S N SL+ LY R + LG +
Sbjct: 293 GMKGLNLLKKLVLSVNHFDQLCQISAA---NFPSLTHLYIRGNVKKLHLGVGCLEKLGNL 349
Query: 614 KILDLSSNKLGGG--VPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQF 671
+ LDLS N + ++ +L L LNLS N G + + L+ LDL+ +
Sbjct: 350 QTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRL 409
Query: 672 FGGIPSS-LSQLSGLSVMDLSY 692
P S L L V++L+Y
Sbjct: 410 HINAPQSPFQNLHFLQVLNLTY 431
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQL 328
++L NQLQ F + L L L++N+L +P ++ L LYL G +LK
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 329 SEFIQDLSSGCTKNSLEWLHLSSNEITGSMP--NLGEFSSLKQXXXXXXXXXGTIHKSIG 386
S L+ L+ L L++N++ S+P + ++L+ H +
Sbjct: 124 SGVFDRLT------KLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 387 QLFKLEMLKLNGNSLGGVISEALF 410
+L KL+ + L GN E L+
Sbjct: 177 RLGKLQTITLFGNQFDCSRCETLY 200
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 15/113 (13%)
Query: 259 LFNVSSSLVDRIS------LPSNQLQGSIPE-AFGRMVSLRYLDLSSNELRGIPKFLGNM 311
L ++ S + DR++ L +NQLQ SIP AF ++ +L+ L LS+N+L+ +P +
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 312 CG-LKILYLSGKELKGQ------LSEFIQDLSSGCTKNSLEWLHLSSNEITGS 357
G L+ + L G + LS++I++ S+ + + LH S + +T S
Sbjct: 178 LGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVKDGTGQNLHESPDGVTCS 230
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYLSGKELK 325
+D++ L NQL+ F R+ L+ L L++N+L+ IP + L+ L LS +L+
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 94/239 (39%), Gaps = 61/239 (25%)
Query: 517 LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLAN 576
LPSN T LNL+ N+ + ++L LD N +S P+ L +LNL +
Sbjct: 23 LPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQH 82
Query: 577 NNFFGKIPNSMGFLHNIRSLSLYNRSQYE-----YKSTLGLVKILDLSSN-----KLGGG 626
N + F N+ L L + S ++ +K+ L+K LDLS N KLG G
Sbjct: 83 NELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIK-LDLSHNGLSSTKLGTG 141
Query: 627 VP------------------KEIMDLVG---LVALNLSRNNL------------------ 647
V E ++ +G L L+LS N L
Sbjct: 142 VQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALL 201
Query: 648 --TGQITPKIGQL-------KSLDFLDLSRNQFFGGIPSSLSQL--SGLSVMDLSYNNL 695
Q+ P + + S+ L L+ NQ S+ S L + L+ +DLSYNNL
Sbjct: 202 LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL 260
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 15/113 (13%)
Query: 259 LFNVSSSLVDRIS------LPSNQLQGSIPE-AFGRMVSLRYLDLSSNELRGIPKFLGNM 311
L ++ S + DR++ L +NQLQ SIP AF ++ +L+ L LS+N+L+ +P +
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 312 CG-LKILYLSGKELKGQ------LSEFIQDLSSGCTKNSLEWLHLSSNEITGS 357
G L+ + L G + LS++I++ S+ + + LH S + +T S
Sbjct: 178 LGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCS 230
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQL 328
++L NQLQ F + L L L++N+L +P ++ L LYL G +LK
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 329 SEFIQDLSSGCTKNSLEWLHLSSNEITGSMP--NLGEFSSLKQXXXXXXXXXGTIHKSIG 386
S L+ L+ L L++N++ S+P + ++L+ H +
Sbjct: 124 SGVFDRLT------KLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 387 QLFKLEMLKLNGNSLGGVISEALF 410
+L KL+ + L GN E L+
Sbjct: 177 RLGKLQTITLFGNQFDCSRCEILY 200
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYLSGKELK 325
+D++ L NQL+ F R+ L+ L L++N+L+ IP + L+ L LS +L+
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301
EV+ + N+ + P +F +L + L QL+ P AF + SL+ L+++SN+L
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 302 RGIP 305
+ +P
Sbjct: 507 KSVP 510
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 100/411 (24%), Positives = 170/411 (41%), Gaps = 65/411 (15%)
Query: 267 VDRISLPSNQLQG-SIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELK 325
+ +++ N +Q +PE F + +L +LDLSSN+++ I L++L+
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNL 180
Query: 326 GQLS-----EFIQ-------DLSSGCTKNSLEWLHLSSNEITG------SMPNLGEFSSL 367
FIQ L +N+ + L++ I G LGEF +
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 368 KQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427
+ + F+L L L +I LF+ L+ +++ L S+T
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDY---YLDDIID--LFNCLTNVSSFSLV--SVT 293
Query: 428 LEFSHDWIPPFQLNTISLGHCKMGPRFP--------KWLQTQNTVPNWFWDLTHQRM-LL 478
+E D+ F + L +CK G +FP + T N N F ++ + L
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352
Query: 479 NLSSNQMRGK-------VPDLSLRF-DISGPGIDISSNHFEG--PIPPLPSNATSLNLSK 528
+LS N + K SL++ D+S G+ S++F G + L ++L
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL---- 408
Query: 529 NKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGK-IPNSM 587
K S SL N LIYLD+S+ + SL +L +A N+F +P+
Sbjct: 409 -KQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 588 GFLHNIRSLSLYNRSQYEYKS-----TLGLVKILDLSSNKLGGGVPKEIMD 633
L N+ L L ++ Q E S +L +++L+++SN+L VP I D
Sbjct: 467 TELRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFD 515
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 39/190 (20%)
Query: 496 FDISGPGIDISSNH------FEGPIPPLPSNATSLNLSKNKFSGS--ISFLC-SLSNRLI 546
FD SG + S H F P + +++N+ SG+ + LC S + +
Sbjct: 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327
Query: 547 YLDLSNNLLSGKLPDCWFQFDSLVILNLANNNF--FGKIPNSMGFLHNIRSLSL-YNRSQ 603
+LD SNNLL+ + + L L L N KI + +++ L + N
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 604 YE--------YKSTLGL------------------VKILDLSSNKLGGGVPKEIMDLVGL 637
Y+ KS L L +K+LDL SNK+ +PK+++ L L
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEAL 446
Query: 638 VALNLSRNNL 647
LN++ N L
Sbjct: 447 QELNVASNQL 456
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 244 IDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG 303
++++ N LT++++ L + + L SN+++ SIP+ ++ +L+ L+++SN+L+
Sbjct: 404 LNMSSNILTDTIFRCL----PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458
Query: 304 IP 305
+P
Sbjct: 459 VP 460
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 78/181 (43%), Gaps = 11/181 (6%)
Query: 523 SLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLL--SGKLPDCWFQFDSLVILNLANNNFF 580
SL L+ NK GSISF L YLDLS N L SG +SL L+L+ N
Sbjct: 332 SLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389
Query: 581 GKIPNSMGFLHNIRSLSLYN---RSQYEYKSTLGLVKI--LDLSSNKLGGGVPKEIMDLV 635
N MG L ++ L + + E+ + L L K+ LD+S + L
Sbjct: 390 IMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448
Query: 636 GLVALNLSRNNLTGQITPKI-GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNN 694
L L ++ N+ + +L FLDLS+ Q L L ++++S+NN
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508
Query: 695 L 695
L
Sbjct: 509 L 509
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 78/181 (43%), Gaps = 11/181 (6%)
Query: 523 SLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLL--SGKLPDCWFQFDSLVILNLANNNFF 580
SL L+ NK GSISF L YLDLS N L SG +SL L+L+ N
Sbjct: 327 SLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 384
Query: 581 GKIPNSMGFLHNIRSLSLYN---RSQYEYKSTLGLVKI--LDLSSNKLGGGVPKEIMDLV 635
N MG L ++ L + + E+ + L L K+ LD+S + L
Sbjct: 385 IMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 443
Query: 636 GLVALNLSRNNLTGQITPKI-GQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNN 694
L L ++ N+ + +L FLDLS+ Q L L ++++S+NN
Sbjct: 444 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 503
Query: 695 L 695
L
Sbjct: 504 L 504
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 132/343 (38%), Gaps = 86/343 (25%)
Query: 291 LRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLS 350
L YL +S+N+L +P+ L N LKI+ + LK + DL SLE++
Sbjct: 133 LEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKK-----LPDLPP-----SLEFIAAG 181
Query: 351 SNEITGSMPNLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSL--GGVISEA 408
+N++ +P L L I+ L KL L L+ S+ G I E
Sbjct: 182 NNQLE-ELPELQNLPFL-----------TAIYADNNSLKKLPDLPLSLESIVAGNNILEE 229
Query: 409 L--FSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPN 466
L NL L + ADN+L K P P L+ N N
Sbjct: 230 LPELQNLPFLTTI-YADNNL---------------------LKTLPDLPPSLEALNVRDN 267
Query: 467 WFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNL 526
+ DL ++P SL F +D+S N F G + LP N LN
Sbjct: 268 YLTDL---------------PELPQ-SLTF------LDVSENIFSG-LSELPPNLYYLNA 304
Query: 527 SKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNS 586
S N+ I LC L L L++SNN L +LP + + L+ A+ N ++P
Sbjct: 305 SSNE----IRSLCDLPPSLEELNVSNNKL-IELPALPPRLERLI----ASFNHLAEVP-- 353
Query: 587 MGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPK 629
N++ L + E+ V+ DL N VP+
Sbjct: 354 -ELPQNLKQLHVEYNPLREFPDIPESVE--DLRMNSHLAEVPE 393
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 269 RISLPSNQLQGSIPE-AFGRMVSLRYLDLSSNELRGIP 305
R+ L +NQLQ S+PE F ++ L+ L L+ N+L+ +P
Sbjct: 161 RLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKSVP 197
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 244 IDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG 303
+DL N+L S+ +F+ +SL ++ L N+LQ F ++ SL YL+LS+N+L+
Sbjct: 33 LDLETNSL-KSLPNGVFDELTSLT-QLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 304 IPK-FLGNMCGLKILYLSGKELK 325
+P + LK L L+ +L+
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQ 113
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 613 VKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFF 672
VK LDLS+N++ ++ V L AL L+ N + L SL+ LDLS N +
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YL 86
Query: 673 GGIPSS----LSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716
+ SS LS L+ L+++ Y L G+ L + L +++ GN
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKL-QILRVGN 132
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 613 VKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFF 672
VK LDLS+N++ ++ V L AL L+ N + L SL+ LDLS N +
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YL 112
Query: 673 GGIPSS----LSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716
+ SS LS L+ L+++ Y L G+ L + L +++ GN
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKL-QILRVGN 158
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 243 VIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR 302
++ L NNLT++ WL N LV+ + L N+L+ + F +M L L +S+N L
Sbjct: 230 ILKLQHNNLTDTA--WLLNYPG-LVE-VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285
Query: 303 GIPKFLGNMCGLKILYLSGKEL 324
+ + + LK+L LS L
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHL 307
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 72/177 (40%), Gaps = 47/177 (26%)
Query: 280 SIPE-AFGRMVSLRYLDLSSNELR-------GIPKFLGNMCGLKILYLSGKELKGQLSEF 331
SIP AF R+ SLR LDL EL+ G + L N+ L + + +E+ L+
Sbjct: 150 SIPSYAFNRIPSLRRLDLG--ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPL 206
Query: 332 IQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQXXXXXXXXXGTIHKSIGQLFKL 391
I+ L+ L LS N ++ P G F L L KL
Sbjct: 207 IK----------LDELDLSGNHLSAIRP--GSFQGLMH------------------LQKL 236
Query: 392 EMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPF-QLNTISLGH 447
M++ S VI F NL L ++LA N+LTL HD P L I L H
Sbjct: 237 WMIQ----SQIQVIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLHH 288
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 243 VIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR 302
++ L NNLT++ WL N LV+ + L N+L+ + F +M L L +S+N L
Sbjct: 236 ILKLQHNNLTDTA--WLLNYPG-LVE-VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
Query: 303 GIPKFLGNMCGLKILYLSGKEL 324
+ + + LK+L LS L
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHL 313
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 517 LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLAN 576
LP+N T LNL+ N+ + + ++L LD+ N +S P+ + L +LNL +
Sbjct: 28 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 87
Query: 577 NNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVK-----ILDLSSN-----KLGGG 626
N + F N+ L L + S + K+ VK LDLS N KLG
Sbjct: 88 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQ 146
Query: 627 V 627
V
Sbjct: 147 V 147
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 517 LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLAN 576
LP+N T LNL+ N+ + + ++L LD+ N +S P+ + L +LNL +
Sbjct: 33 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 92
Query: 577 NNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVK-----ILDLSSNKLGG 625
N + F N+ L L + S + K+ VK LDLS N L
Sbjct: 93 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSS 145
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 517 LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLAN 576
LP+N T LNL+ N+ + + ++L LD+ N +S P+ + L +LNL +
Sbjct: 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82
Query: 577 NNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVK-----ILDLSSN-----KLGGG 626
N + F N+ L L + S + K+ VK LDLS N KLG
Sbjct: 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQ 141
Query: 627 V 627
V
Sbjct: 142 V 142
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 612 LVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKI----GQLKSLDFLDLS 667
LVK L+L N+L G P + L L N + +I+ K+ QLK+L+ D
Sbjct: 56 LVK-LELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYD-- 111
Query: 668 RNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLP 723
NQ +P S L+ L+ ++L+ N + L + + G CG P
Sbjct: 112 -NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 480 LSSNQMRGKVPDLSL----RFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSI 535
+SS+ + G++P L R ++G I N FEG S+ L L +NK
Sbjct: 44 ISSDGLFGRLPHLVKLELKRNQLTG----IEPNAFEGA-----SHIQELQLGENKIKEIS 94
Query: 536 SFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNF 579
+ + ++L L+L +N +S +P + +SL LNLA+N F
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|2PE8|A Chain A, Crystal Structure Of The Uhm Domain Of Human Spf45 (free
Form)
pdb|2PEH|A Chain A, Crystal Structure Of The Uhm Domain Of Human Spf45 In
Complex With Sf3b155-Ulm5
pdb|2PEH|B Chain B, Crystal Structure Of The Uhm Domain Of Human Spf45 In
Complex With Sf3b155-Ulm5
Length = 105
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 393 MLKLNGNSLGGVISEALFSNLSRLAALDLAD 423
++ LNG GG + +A F NL + LDLA+
Sbjct: 73 VVDLNGRYFGGRVVKACFYNLDKFRVLDLAE 103
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP 305
++ I SN+L+ FG+M L+ L+L+SN+L+ +P
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVP 210
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 248 ENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKF 307
E N + P F+ L RI L +NQ+ P+AF + SL L L N++ +PK
Sbjct: 40 EQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS 98
Query: 308 L 308
L
Sbjct: 99 L 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 248 ENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKF 307
E N + P F+ L RI L +NQ+ P+AF + SL L L N++ +PK
Sbjct: 40 EQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS 98
Query: 308 L 308
L
Sbjct: 99 L 99
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 10/154 (6%)
Query: 248 ENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEA-FGRMVSLRYLDLSSNELRGIPK 306
NN S+ + FN SL R+ L + I EA F +V+LRYL+L L+ IP
Sbjct: 115 RNNPIESIPSYAFNRVPSL-RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN 173
Query: 307 FLGNMCGLKILYLSGKELKGQLSEFIQDLS-SGCTKNSLEWLHLSSNEITGSMPNLGEFS 365
++ L EL G + I+ S G T WL + + T +
Sbjct: 174 LTA------LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL-MHAQVATIERNAFDDLK 226
Query: 366 SLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGN 399
SL++ H L +LE + LN N
Sbjct: 227 SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 88/204 (43%), Gaps = 12/204 (5%)
Query: 523 SLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGK 582
S NL + G+ + L SL+ L+L +N L+ +P F++ S + NN
Sbjct: 67 SKNLVRKIEVGAFNGLPSLNT----LELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIES 121
Query: 583 IPN-SMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLV--- 638
IP+ + + ++R L L + EY S +++L LG K+I +L LV
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLE 181
Query: 639 ALNLSRNNLTGQITPKIGQ-LKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNL-S 696
L LS N L I P Q L SL L L Q ++ L L ++LS+NNL S
Sbjct: 182 ELELSGNRL-DLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Query: 697 GKIPLGTQLQSFNELVYAGNPELC 720
L T L + NP C
Sbjct: 241 LPHDLFTPLHRLERVHLNHNPWHC 264
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301
+V+ L +N +T + P +F+ + L R+ L +NQL F ++ L L L+ N+L
Sbjct: 33 QVLYLYDNQITK-LEPGVFDRLTQLT-RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 302 RGIPK 306
+ IP+
Sbjct: 91 KSIPR 95
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 290 SLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH 348
S + LDLS N LR + + + L++L LS E++ Q LS H
Sbjct: 30 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-----------H 78
Query: 349 LSSNEITGSMPN---LGEFS---SLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLG 402
LS+ +TG+ LG FS SL++ + IG L L+ L + N +
Sbjct: 79 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 138
Query: 403 GVISEALFSNLSRLAALDLADNSLTLEFSHD 433
FSNL+ L LDL+ N + + D
Sbjct: 139 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 169
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 290 SLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH 348
S + LDLS N LR + + + L++L LS E++ Q LS H
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-----------H 77
Query: 349 LSSNEITGSMPN---LGEFS---SLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLG 402
LS+ +TG+ LG FS SL++ + IG L L+ L + N +
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 403 GVISEALFSNLSRLAALDLADNSLTLEFSHD 433
FSNL+ L LDL+ N + + D
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 290 SLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH 348
S + LDLS N LR + + + L++L LS E++ Q LS H
Sbjct: 30 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-----------H 78
Query: 349 LSSNEITGSMPN---LGEFS---SLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLG 402
LS+ +TG+ LG FS SL++ + IG L L+ L + N +
Sbjct: 79 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 138
Query: 403 GVISEALFSNLSRLAALDLADNSLTLEFSHD 433
FSNL+ L LDL+ N + + D
Sbjct: 139 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 169
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 290 SLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH 348
S + LDLS N LR + + + L++L LS E++ Q LS H
Sbjct: 31 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-----------H 79
Query: 349 LSSNEITGSMPN---LGEFS---SLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLG 402
LS+ +TG+ LG FS SL++ + IG L L+ L + N +
Sbjct: 80 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 139
Query: 403 GVISEALFSNLSRLAALDLADNSLTLEFSHD 433
FSNL+ L LDL+ N + + D
Sbjct: 140 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301
+V+ L +N +T + P +F+ + L R+ L +NQL F ++ L L L+ N+L
Sbjct: 33 QVLYLYDNRITK-LEPGVFDRLTQLT-RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 302 RGIPK 306
+ IP+
Sbjct: 91 KSIPR 95
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301
+V+ L +N +T + P +F+ + L R+ L +NQL F ++ L L L+ N+L
Sbjct: 41 QVLYLYDNQITK-LEPGVFDRLTQLT-RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Query: 302 RGIPK 306
+ IP+
Sbjct: 99 KSIPR 103
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 290 SLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH 348
S + LDLS N LR + + + L++L LS E++ Q LS H
Sbjct: 31 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-----------H 79
Query: 349 LSSNEITGSMPN---LGEFS---SLKQXXXXXXXXXGTIHKSIGQLFKLEMLKLNGNSLG 402
LS+ +TG+ LG FS SL++ + IG L L+ L + N +
Sbjct: 80 LSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQ 139
Query: 403 GVISEALFSNLSRLAALDLADNSLTLEFSHD 433
FSNL+ L LDL+ N + + D
Sbjct: 140 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,389,158
Number of Sequences: 62578
Number of extensions: 802375
Number of successful extensions: 2496
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1857
Number of HSP's gapped (non-prelim): 421
length of query: 776
length of database: 14,973,337
effective HSP length: 106
effective length of query: 670
effective length of database: 8,340,069
effective search space: 5587846230
effective search space used: 5587846230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)