Query 047152
Match_columns 776
No_of_seqs 864 out of 4733
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-72 2.4E-77 686.0 49.7 582 37-723 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-58 2.4E-63 563.5 40.8 516 112-723 69-588 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1.1E-41 2.3E-46 336.0 -12.3 510 112-716 45-561 (565)
4 KOG4194 Membrane glycoprotein 100.0 1.7E-38 3.6E-43 326.8 9.7 400 241-724 54-457 (873)
5 KOG4194 Membrane glycoprotein 100.0 3.7E-36 8E-41 309.6 7.5 373 240-700 79-456 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 3.1E-39 6.8E-44 318.6 -15.7 497 132-719 40-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.5E-35 3.2E-40 321.3 -3.9 496 105-693 14-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1E-34 2.2E-39 314.9 -4.1 476 142-695 3-488 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.1E-34 6.7E-39 297.0 -4.0 388 110-691 5-394 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.1E-32 2.4E-37 285.6 -1.8 319 83-427 7-329 (1255)
11 PLN03210 Resistant to P. syrin 99.9 2.1E-21 4.6E-26 236.8 27.0 304 343-670 590-904 (1153)
12 KOG4237 Extracellular matrix p 99.9 3.6E-24 7.8E-29 212.3 0.6 293 117-451 51-359 (498)
13 PLN03210 Resistant to P. syrin 99.9 3E-21 6.6E-26 235.4 26.2 320 281-646 580-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 5.4E-24 1.2E-28 211.1 -3.7 369 289-693 67-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 3.7E-21 8E-26 217.4 17.7 159 501-701 305-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 3E-21 6.6E-26 218.1 16.5 132 514-682 337-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.7E-18 5.8E-23 195.8 20.1 298 33-378 57-401 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.4E-18 5.2E-23 196.1 13.6 252 76-378 173-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1E-18 2.2E-23 185.6 6.8 60 365-425 250-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.1E-18 1.5E-22 179.1 8.5 259 141-428 2-292 (319)
21 KOG0617 Ras suppressor protein 99.7 1.5E-18 3.2E-23 153.1 -4.7 155 519-698 33-188 (264)
22 KOG0617 Ras suppressor protein 99.6 8.9E-18 1.9E-22 148.2 -5.4 166 108-310 29-194 (264)
23 PLN03150 hypothetical protein; 99.5 3.8E-14 8.1E-19 161.7 13.8 152 33-197 366-526 (623)
24 PLN03150 hypothetical protein; 99.5 2.5E-14 5.5E-19 163.1 9.8 117 613-729 420-538 (623)
25 KOG1909 Ran GTPase-activating 99.2 4.6E-13 9.9E-18 132.4 -2.7 254 106-401 24-310 (382)
26 KOG3207 Beta-tubulin folding c 99.2 3.2E-12 7E-17 129.8 1.9 217 158-378 118-339 (505)
27 KOG0532 Leucine-rich repeat (L 99.2 7E-13 1.5E-17 138.6 -4.7 167 502-697 79-248 (722)
28 COG4886 Leucine-rich repeat (L 99.1 5.9E-11 1.3E-15 129.8 7.2 177 519-702 116-296 (394)
29 KOG0532 Leucine-rich repeat (L 99.1 2.4E-12 5.2E-17 134.6 -3.6 123 267-399 145-270 (722)
30 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.3E-16 126.2 1.0 211 134-357 118-341 (505)
31 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.5E-15 127.5 9.2 198 116-330 97-295 (394)
32 KOG1909 Ran GTPase-activating 99.0 1.8E-10 3.9E-15 114.3 3.8 201 207-426 87-310 (382)
33 PF14580 LRR_9: Leucine-rich r 99.0 3.7E-10 8E-15 105.5 5.1 111 108-226 15-127 (175)
34 PF14580 LRR_9: Leucine-rich r 98.9 5.7E-10 1.2E-14 104.2 4.3 127 84-221 20-149 (175)
35 KOG1259 Nischarin, modulator o 98.9 1.7E-10 3.7E-15 111.5 -0.7 132 287-428 282-413 (490)
36 KOG0531 Protein phosphatase 1, 98.9 1.7E-10 3.8E-15 126.2 -1.9 198 109-325 69-268 (414)
37 KOG1259 Nischarin, modulator o 98.8 9.6E-10 2.1E-14 106.4 2.1 207 104-327 206-414 (490)
38 KOG4658 Apoptotic ATPase [Sign 98.8 2.8E-09 6.2E-14 124.4 5.2 294 113-424 546-856 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 4.1E-09 8.8E-14 80.8 3.4 60 636-695 2-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.7 5.7E-09 1.2E-13 121.9 4.5 205 109-327 520-732 (889)
41 PF13855 LRR_8: Leucine rich r 98.7 5.9E-09 1.3E-13 79.9 3.0 61 611-671 1-61 (61)
42 PF08263 LRRNT_2: Leucine rich 98.7 1.8E-08 3.8E-13 70.5 4.5 41 38-79 2-43 (43)
43 KOG0531 Protein phosphatase 1, 98.7 2E-09 4.3E-14 117.8 -1.9 125 112-252 49-175 (414)
44 KOG2982 Uncharacterized conser 98.6 1.7E-08 3.8E-13 97.9 1.5 93 157-252 41-134 (418)
45 KOG1859 Leucine-rich repeat pr 98.5 8.5E-09 1.8E-13 111.3 -4.5 107 609-721 185-294 (1096)
46 KOG4579 Leucine-rich repeat (L 98.4 1.7E-08 3.6E-13 86.8 -3.4 133 545-701 29-164 (177)
47 KOG2120 SCF ubiquitin ligase, 98.4 2.6E-08 5.6E-13 96.8 -2.6 177 239-424 185-373 (419)
48 KOG2120 SCF ubiquitin ligase, 98.4 3.2E-08 6.8E-13 96.2 -2.1 61 308-376 309-374 (419)
49 KOG1859 Leucine-rich repeat pr 98.3 1.2E-08 2.6E-13 110.2 -7.1 126 267-402 166-292 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.3 3.9E-07 8.4E-12 87.6 3.8 87 267-355 159-255 (388)
51 COG5238 RNA1 Ran GTPase-activa 98.3 3.9E-07 8.4E-12 87.6 3.5 228 107-356 25-286 (388)
52 KOG4579 Leucine-rich repeat (L 98.2 7.1E-08 1.5E-12 83.0 -3.5 127 568-716 28-155 (177)
53 KOG2982 Uncharacterized conser 98.2 6.4E-07 1.4E-11 87.3 1.8 64 110-173 69-133 (418)
54 KOG3665 ZYG-1-like serine/thre 97.9 6.1E-06 1.3E-10 94.4 2.6 120 136-259 147-270 (699)
55 PF12799 LRR_4: Leucine Rich r 97.9 9.1E-06 2E-10 56.9 2.4 35 613-648 3-37 (44)
56 KOG2739 Leucine-rich acidic nu 97.8 8.7E-06 1.9E-10 78.8 2.3 115 102-219 33-150 (260)
57 KOG4341 F-box protein containi 97.8 5.2E-06 1.1E-10 85.0 -0.2 134 287-425 292-437 (483)
58 PF12799 LRR_4: Leucine Rich r 97.7 3.5E-05 7.6E-10 53.9 3.7 36 290-325 2-37 (44)
59 KOG1644 U2-associated snRNP A' 97.7 5.2E-05 1.1E-09 70.3 5.6 107 112-221 42-149 (233)
60 PRK15386 type III secretion pr 97.7 0.00014 3.1E-09 76.7 9.2 50 501-553 55-104 (426)
61 KOG4341 F-box protein containi 97.7 2.9E-06 6.2E-11 86.8 -3.6 298 113-419 139-457 (483)
62 KOG1644 U2-associated snRNP A' 97.6 5.9E-05 1.3E-09 70.0 4.6 129 115-250 22-151 (233)
63 KOG3665 ZYG-1-like serine/thre 97.5 8.9E-05 1.9E-09 85.0 4.4 108 137-251 122-232 (699)
64 PRK15386 type III secretion pr 97.4 0.00056 1.2E-08 72.3 8.3 14 312-325 156-169 (426)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00077 1.7E-08 65.6 2.8 95 129-226 35-130 (260)
66 KOG2123 Uncharacterized conser 96.7 8.3E-05 1.8E-09 72.2 -4.8 81 113-198 20-100 (388)
67 KOG2123 Uncharacterized conser 96.7 0.00013 2.9E-09 70.9 -3.5 102 135-245 17-123 (388)
68 PF13306 LRR_5: Leucine rich r 96.3 0.0095 2.1E-07 53.3 6.2 54 538-593 7-60 (129)
69 KOG1947 Leucine rich repeat pr 96.1 0.0015 3.1E-08 73.7 -0.2 112 111-224 187-307 (482)
70 PF13306 LRR_5: Leucine rich r 95.9 0.026 5.7E-07 50.4 7.2 120 284-416 7-128 (129)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.0063 1.4E-07 35.3 0.9 12 661-672 2-13 (22)
72 KOG1947 Leucine rich repeat pr 95.5 0.0043 9.3E-08 69.8 0.4 118 105-222 207-331 (482)
73 PF00560 LRR_1: Leucine Rich R 95.3 0.0073 1.6E-07 35.0 0.8 20 637-657 2-21 (22)
74 KOG4308 LRR-containing protein 94.5 0.0011 2.5E-08 72.7 -7.5 61 344-404 235-305 (478)
75 KOG4308 LRR-containing protein 94.4 0.0014 2.9E-08 72.2 -7.0 38 343-380 263-305 (478)
76 KOG0473 Leucine-rich repeat pr 91.3 0.01 2.2E-07 56.6 -5.0 82 612-696 43-124 (326)
77 KOG0473 Leucine-rich repeat pr 91.2 0.0039 8.4E-08 59.3 -7.8 62 108-172 61-122 (326)
78 PF13504 LRR_7: Leucine rich r 90.7 0.14 3.1E-06 27.4 1.1 11 637-647 3-13 (17)
79 PF13504 LRR_7: Leucine rich r 90.5 0.17 3.6E-06 27.2 1.3 14 290-303 2-15 (17)
80 smart00370 LRR Leucine-rich re 86.0 0.58 1.3E-05 28.2 1.8 13 636-648 3-15 (26)
81 smart00369 LRR_TYP Leucine-ric 86.0 0.58 1.3E-05 28.2 1.8 13 636-648 3-15 (26)
82 smart00370 LRR Leucine-rich re 84.3 0.63 1.4E-05 28.1 1.4 14 659-672 2-15 (26)
83 smart00369 LRR_TYP Leucine-ric 84.3 0.63 1.4E-05 28.1 1.4 14 659-672 2-15 (26)
84 KOG3864 Uncharacterized conser 83.5 0.15 3.3E-06 48.0 -2.3 33 114-147 103-135 (221)
85 KOG3864 Uncharacterized conser 80.0 0.58 1.3E-05 44.2 0.1 36 138-173 102-137 (221)
86 PF13516 LRR_6: Leucine Rich r 79.2 0.57 1.2E-05 27.7 -0.1 15 543-557 2-16 (24)
87 smart00365 LRR_SD22 Leucine-ri 70.6 3.5 7.6E-05 25.0 1.7 15 186-200 2-16 (26)
88 smart00364 LRR_BAC Leucine-ric 68.2 3.5 7.7E-05 24.9 1.4 13 636-648 3-15 (26)
89 TIGR00864 PCC polycystin catio 66.5 3.5 7.5E-05 53.9 2.3 37 665-701 1-37 (2740)
90 KOG3763 mRNA export factor TAP 60.9 4.9 0.00011 44.0 1.9 36 287-322 216-254 (585)
91 smart00368 LRR_RI Leucine rich 53.3 12 0.00026 23.0 1.9 14 112-125 2-15 (28)
92 KOG4242 Predicted myosin-I-bin 49.6 39 0.00084 36.6 6.1 15 112-126 165-179 (553)
93 KOG3763 mRNA export factor TAP 43.6 17 0.00038 40.0 2.6 38 185-222 217-254 (585)
94 KOG4242 Predicted myosin-I-bin 32.5 2.2E+02 0.0047 31.2 8.4 60 113-173 215-280 (553)
95 smart00367 LRR_CC Leucine-rich 25.9 49 0.0011 19.7 1.5 12 161-172 2-13 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-72 Score=686.03 Aligned_cols=582 Identities=35% Similarity=0.507 Sum_probs=438.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCE
Q 047152 37 IDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTY 116 (776)
Q Consensus 37 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~ 116 (776)
.++|+.||++||+++.+|.+.+.+|. ...+||.|.||+|+. .++|+.|+|++ +.++|.+++++..+++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~-----~~i~~~~~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG-----KNISGKISSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC-----CCccccCChHHhCCCCCCE
Confidence 55899999999999988888889997 467899999999975 57999999998 6788899999999999999
Q ss_pred EeCCCCCCCCCCCCcccc-CCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccC
Q 047152 117 LDLSRNNFSGSSIPEFLG-SLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDL 195 (776)
Q Consensus 117 L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~ 195 (776)
|+|++|.+++. +|..+. .+++|++|+|++|++++.+|. +.+++|++|+|++|.+.+ ..+..++++++|++|++++
T Consensus 98 L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~ 173 (968)
T PLN00113 98 INLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGG 173 (968)
T ss_pred EECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccc-cCChHHhcCCCCCEEECcc
Confidence 99999999875 887654 899999999999999998885 468899999999998864 5556677777777777777
Q ss_pred CCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCC
Q 047152 196 NDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSN 275 (776)
Q Consensus 196 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n 275 (776)
|.+.+ .+|..++++++|++|++++|.+.+.+|..++++ ++|++|++++|++.+.+|..+.++++ |++|++++|
T Consensus 174 n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n 246 (968)
T PLN00113 174 NVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM---KSLKWIYLGYNNLSGEIPYEIGGLTS--LNHLDLVYN 246 (968)
T ss_pred Ccccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHcCc---CCccEEECcCCccCCcCChhHhcCCC--CCEEECcCc
Confidence 77665 245566677777777777777766666666666 66666666666666666666666666 666666666
Q ss_pred ccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccc
Q 047152 276 QLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEI 354 (776)
Q Consensus 276 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l 354 (776)
++++.+|..++++++|++|++++|.+++ +|..+.++++|++|++++|.+.+.+|..+..++ +|++|++++|.+
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~------~L~~L~l~~n~~ 320 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ------NLEILHLFSNNF 320 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC------CCcEEECCCCcc
Confidence 6666666666666666666666666655 555566666666666666666555555555554 555555555555
Q ss_pred cccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCC
Q 047152 355 TGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHD 433 (776)
Q Consensus 355 ~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 433 (776)
++..|. +..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|. .+..+++|+.|++++|++.
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~l~~n~l~------ 393 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE-GLCSSGNLFKLILFSNSLE------ 393 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh-hHhCcCCCCEEECcCCEec------
Confidence 554444 45555555555555555555555555555555555555555554444 3444455555555555444
Q ss_pred CCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCccccc
Q 047152 434 WIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGP 513 (776)
Q Consensus 434 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~ 513 (776)
+.+|.++.. +++|+.|++++|+++|.+|. .+.
T Consensus 394 ------------------~~~p~~~~~-----------~~~L~~L~L~~n~l~~~~p~-~~~------------------ 425 (968)
T PLN00113 394 ------------------GEIPKSLGA-----------CRSLRRVRLQDNSFSGELPS-EFT------------------ 425 (968)
T ss_pred ------------------ccCCHHHhC-----------CCCCCEEECcCCEeeeECCh-hHh------------------
Confidence 444443332 23455555555555555444 111
Q ss_pred CCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCC
Q 047152 514 IPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNI 593 (776)
Q Consensus 514 ~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 593 (776)
.+++|+.|++++|.+++.++..+..+++|++|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+..+++|
T Consensus 426 ---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 501 (968)
T PLN00113 426 ---KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL 501 (968)
T ss_pred ---cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc
Confidence 13566777777777777777777778889999999999998888765 45889999999999999999888777766
Q ss_pred cEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeee
Q 047152 594 RSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFG 673 (776)
Q Consensus 594 ~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 673 (776)
+.|++++|++.+.+|+.++++++|++|+|++|.++|.+|..++.+++|++|||++|+++|
T Consensus 502 --------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 502 --------------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred --------------------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCC
Q 047152 674 GIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 674 ~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~ 723 (776)
.+|..+.++++|++|++++|+++|.+|..+++.++...++.|||.+||.+
T Consensus 562 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 562 EIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-58 Score=563.50 Aligned_cols=516 Identities=35% Similarity=0.485 Sum_probs=412.3
Q ss_pred CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCC-CCCCCCEEeccCCCCCCCCCchhhccCCCCcE
Q 047152 112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLG-NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIY 190 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 190 (776)
.+++.|+|++|.+++. +|..+..+++|++|+|++|+++|.+|..+. .+++|++|+|++|++.+ ..+ .+.+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p--~~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIP--RGSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc-ccC--ccccCCCCE
Confidence 4688999999999986 888999999999999999999999998765 89999999999999864 222 245778888
Q ss_pred EEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEE
Q 047152 191 LYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRI 270 (776)
Q Consensus 191 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L 270 (776)
|++++|.+++ .++..++++++|++|++++|.+.+..|..++++ ++|++|++++|++.+.+|..+.++++ |+.|
T Consensus 145 L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L 217 (968)
T PLN00113 145 LDLSNNMLSG--EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL---TSLEFLTLASNQLVGQIPRELGQMKS--LKWI 217 (968)
T ss_pred EECcCCcccc--cCChHHhcCCCCCEEECccCcccccCChhhhhC---cCCCeeeccCCCCcCcCChHHcCcCC--ccEE
Confidence 8888888776 356677788888888888888877777777777 77888888888877777777777777 7777
Q ss_pred EccCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEc
Q 047152 271 SLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL 349 (776)
Q Consensus 271 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L 349 (776)
++++|++++.+|..++++++|++|++++|.+++ +|..++++++|++|++++|.+.+.+|..+..++ +|++|++
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~------~L~~L~L 291 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ------KLISLDL 291 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc------CcCEEEC
Confidence 777777777777777777777777777777776 777777777777777777777777777777666 6777777
Q ss_pred ccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce
Q 047152 350 SSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL 428 (776)
Q Consensus 350 ~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 428 (776)
++|.+.+.+|. +..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|. .+..+++|+.|++++|++++
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEe
Confidence 77777766665 66677777777777777776776777777777777777777666665 46666666666666666655
Q ss_pred ecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCC
Q 047152 429 EFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSN 508 (776)
Q Consensus 429 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n 508 (776)
..| .++.. .++++.+++++|.+.+.+|. .+.
T Consensus 371 ~~p------------------------~~~~~-----------~~~L~~L~l~~n~l~~~~p~-~~~------------- 401 (968)
T PLN00113 371 EIP------------------------EGLCS-----------SGNLFKLILFSNSLEGEIPK-SLG------------- 401 (968)
T ss_pred eCC------------------------hhHhC-----------cCCCCEEECcCCEecccCCH-HHh-------------
Confidence 433 33222 23466667777766666554 111
Q ss_pred cccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCcccc
Q 047152 509 HFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMG 588 (776)
Q Consensus 509 ~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 588 (776)
.+++|+.|++++|++++..|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++.+.+|..++
T Consensus 402 --------~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 473 (968)
T PLN00113 402 --------ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473 (968)
T ss_pred --------CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc
Confidence 146788888999998888888888899999999999999999999888999999999999999988887543
Q ss_pred ccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcC
Q 047152 589 FLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSR 668 (776)
Q Consensus 589 ~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 668 (776)
. ++|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|+|++
T Consensus 474 -~--------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 532 (968)
T PLN00113 474 -S--------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532 (968)
T ss_pred -c--------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence 2 3458899999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-CcccccccccccCCCCCCCCC
Q 047152 669 NQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 669 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~ 723 (776)
|++++.+|..+..+++|+.|++++|+++|.+|.. ..+..+..+.+.+|+..+..|
T Consensus 533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999999999999999999999999999999975 456678888999998776544
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-41 Score=336.03 Aligned_cols=510 Identities=26% Similarity=0.348 Sum_probs=320.0
Q ss_pred CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEE
Q 047152 112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYL 191 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 191 (776)
..++.|++++|.+. .+...+.++..|.+|++++|+++ .+|.+++.+.+++.|+.++|++. ..|+.++.+.+|+.|
T Consensus 45 v~l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccCchh--hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhh
Confidence 34555556666555 24445555666666666666665 55555666666666666666654 455556666666666
Q ss_pred EccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEE
Q 047152 192 YLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRIS 271 (776)
Q Consensus 192 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~ 271 (776)
+.++|.+.. +++.++.+..|+.++..+|+++. .|..++.+ .+|..+++.+|++....|..+. ++. |++++
T Consensus 120 ~~s~n~~~e---l~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~---~~l~~l~~~~n~l~~l~~~~i~-m~~--L~~ld 189 (565)
T KOG0472|consen 120 DCSSNELKE---LPDSIGRLLDLEDLDATNNQISS-LPEDMVNL---SKLSKLDLEGNKLKALPENHIA-MKR--LKHLD 189 (565)
T ss_pred hccccceee---cCchHHHHhhhhhhhcccccccc-CchHHHHH---HHHHHhhccccchhhCCHHHHH-HHH--HHhcc
Confidence 666666555 34556666666666666666654 34445555 6677777777777754444444 666 88888
Q ss_pred ccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc
Q 047152 272 LPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS 351 (776)
Q Consensus 272 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~ 351 (776)
...|.+. .+|+.++.+.+|+.|++..|++..+| .|..+..|++++++.|.+..........+. ++..|||.+
T Consensus 190 ~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~------~l~vLDLRd 261 (565)
T KOG0472|consen 190 CNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLN------SLLVLDLRD 261 (565)
T ss_pred cchhhhh-cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccc------cceeeeccc
Confidence 8777776 57788888888888888888888888 688888888888888888766555555676 888888888
Q ss_pred ccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCC--CCcEEE--CCCCccc
Q 047152 352 NEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLS--RLAALD--LADNSLT 427 (776)
Q Consensus 352 n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~--~L~~L~--Ls~n~l~ 427 (776)
|+++..+..+..+.+|++||+|+|.++ ..|.+++++ .|+.|.+.+|.+.. +-...+..-+ -|++|. +..-.++
T Consensus 262 Nklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS 338 (565)
T KOG0472|consen 262 NKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLS 338 (565)
T ss_pred cccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCC
Confidence 888866555778888888999998888 567788888 88888888888742 2221111110 011111 0000111
Q ss_pred eecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccC
Q 047152 428 LEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISS 507 (776)
Q Consensus 428 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~ 507 (776)
..-...-. .+..|.|.. |. .....+.+.|+++.-+++ .+|+.-+....
T Consensus 339 ~se~~~e~---------------~~t~~~~~~-----~~--~~~~i~tkiL~~s~~qlt-~VPdEVfea~~--------- 386 (565)
T KOG0472|consen 339 QSEGGTET---------------AMTLPSESF-----PD--IYAIITTKILDVSDKQLT-LVPDEVFEAAK--------- 386 (565)
T ss_pred CCcccccc---------------cCCCCCCcc-----cc--hhhhhhhhhhcccccccc-cCCHHHHHHhh---------
Confidence 00000000 000010000 00 011123444444444443 23321111000
Q ss_pred CcccccCCCCCCCCcEEEccCCccccCCCccccCCCCc-cEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCcc
Q 047152 508 NHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRL-IYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNS 586 (776)
Q Consensus 508 n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 586 (776)
-.-++..+++.|++.. +|..+..+..+ +.+++++|.++ .+|..++.+++|..|+|++|-+. .+|..
T Consensus 387 ----------~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e 453 (565)
T KOG0472|consen 387 ----------SEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEE 453 (565)
T ss_pred ----------hcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchh
Confidence 0113445555555543 22222222222 33456666664 77788888888888888888776 67877
Q ss_pred ccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeC
Q 047152 587 MGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDL 666 (776)
Q Consensus 587 ~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 666 (776)
++.+..| +.||+|+|+|. .+|..+..+..++.+-.++|++....|+.+.++.+|.+|||
T Consensus 454 ~~~lv~L--------------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 454 MGSLVRL--------------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hhhhhhh--------------------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 7777666 67888888888 78888888888888888889998666666999999999999
Q ss_pred cCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC--CcccccccccccCC
Q 047152 667 SRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG--TQLQSFNELVYAGN 716 (776)
Q Consensus 667 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~gN 716 (776)
.+|.+. .+|..++++++|++|++.+|+|. .|.. -...+..-++|.++
T Consensus 513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~iLmkgT~aiL~ylrd 561 (565)
T KOG0472|consen 513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRHQILMKGTAAILSYLRD 561 (565)
T ss_pred CCCchh-hCChhhccccceeEEEecCCccC--CCHHHHhccChHHHHHHhcc
Confidence 999998 78889999999999999999997 4432 11233334555554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-38 Score=326.84 Aligned_cols=400 Identities=25% Similarity=0.241 Sum_probs=279.9
Q ss_pred ccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEecc
Q 047152 241 LEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLS 320 (776)
Q Consensus 241 L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls 320 (776)
-..||.+++.+.......+...-...-+.|++++|++...-+..|.++++|+++++..|.++.||...+...+|+.|+|.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 34456665555432111111111111677999999999888899999999999999999999999887778889999999
Q ss_pred CCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCc
Q 047152 321 GKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGN 399 (776)
Q Consensus 321 ~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N 399 (776)
+|.|+....+.+..++ .|+.|||+.|.++..... +..-.++++|+|++|.|+......|..+.+|..|.|++|
T Consensus 134 ~N~I~sv~se~L~~l~------alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 134 HNLISSVTSEELSALP------ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred ccccccccHHHHHhHh------hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence 9999999999999888 899999999999865443 777789999999999999888888999999999999999
Q ss_pred cccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEE
Q 047152 400 SLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLN 479 (776)
Q Consensus 400 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~ 479 (776)
+++ .+|...|.++++|+.|+|..|+|....--.|.++.+|+.+.+.+|.+.. +.+..
T Consensus 208 rit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k-----------L~DG~----------- 264 (873)
T KOG4194|consen 208 RIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK-----------LDDGA----------- 264 (873)
T ss_pred ccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc-----------ccCcc-----------
Confidence 997 5566689999999999999999875544556666666666555555420 11111
Q ss_pred cccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccC
Q 047152 480 LSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKL 559 (776)
Q Consensus 480 l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 559 (776)
...+.++++|+++.|+++..-..++-++++|+.|+||+|.|...-
T Consensus 265 -----------------------------------Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 265 -----------------------------------FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred -----------------------------------eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 111456667777777777666666667788888888888888777
Q ss_pred ChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCE
Q 047152 560 PDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVA 639 (776)
Q Consensus 560 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 639 (776)
++.+..+++|++|+|++|+++..-+.+|..+..| ++|+|++|+++..--..|..+++|++
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L--------------------e~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL--------------------EELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHHHHh--------------------hhhcccccchHHHHhhHHHHhhhhhh
Confidence 7777888888888888888887777777666666 45556666665444455556666666
Q ss_pred EECcCCcccCcCcc---cccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCC
Q 047152 640 LNLSRNNLTGQITP---KIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716 (776)
Q Consensus 640 L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN 716 (776)
|||++|.+++.|.+ .|..+++|+.|++.+|++.......|..+..|++|||.+|.+...-|..-....++++.+..-
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSs 449 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSS 449 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhccc
Confidence 66666666544432 344456666666666666644445566666666666666666543333211114444445444
Q ss_pred CCCCCCCC
Q 047152 717 PELCGLPL 724 (776)
Q Consensus 717 ~~lc~~~l 724 (776)
..+|+|.+
T Consensus 450 sflCDCql 457 (873)
T KOG4194|consen 450 SFLCDCQL 457 (873)
T ss_pred ceEEeccH
Confidence 56666653
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-36 Score=309.63 Aligned_cols=373 Identities=23% Similarity=0.279 Sum_probs=263.6
Q ss_pred CccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCC-chhhcccCCCcEEe
Q 047152 240 SLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI-PKFLGNMCGLKILY 318 (776)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~i-p~~l~~l~~L~~L~ 318 (776)
.-+.||+++|++....+..|.++++ |+++++.+|.++ .+|...+...+|+.|+|.+|.|+.+ .+.+..++.|+.||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~n--Lq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPN--LQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCc--ceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 3455677777777666666777777 777777777776 4565555555677777777777773 45677777778888
Q ss_pred ccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECC
Q 047152 319 LSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLN 397 (776)
Q Consensus 319 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 397 (776)
||.|.|+......|..-. ++++|+|++|+|+..... |..+.+|..|.|++|+++...+..|.++++|+.|+|.
T Consensus 156 LSrN~is~i~~~sfp~~~------ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKV------NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhchhhcccCCCCCCCC------CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 888777766555444433 688888888888865554 7778888888888888887777778888888888888
Q ss_pred CccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccE
Q 047152 398 GNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRML 477 (776)
Q Consensus 398 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~ 477 (776)
.|++. .+....|.++++|+.|.+..|++.......|..+.++++|+++.|++...--.|+..
T Consensus 230 rN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg----------------- 291 (873)
T KOG4194|consen 230 RNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG----------------- 291 (873)
T ss_pred cccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc-----------------
Confidence 88884 333346888888888888888888777788888888887777777765332222222
Q ss_pred EEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccc
Q 047152 478 LNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSG 557 (776)
Q Consensus 478 L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 557 (776)
+..|+.|++++|.|..+-+..+..+++|+.|+|++|+|+.
T Consensus 292 ----------------------------------------Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 292 ----------------------------------------LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred ----------------------------------------cchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 2445555666666655555556666777777777777776
Q ss_pred cCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCch---hhhcc
Q 047152 558 KLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPK---EIMDL 634 (776)
Q Consensus 558 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l 634 (776)
..+..|..+..|++|+|++|.+...-...|..+++| ++|||++|.++..|-+ .|..+
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL--------------------~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL--------------------HKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh--------------------hhhcCcCCeEEEEEecchhhhccc
Confidence 666667777777777777777764444444444444 5666677766654433 35678
Q ss_pred ccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCC
Q 047152 635 VGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP 700 (776)
Q Consensus 635 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 700 (776)
++|+.|++.+|++....-..|..+.+||.|||.+|.|...-|..|..+ .|+.|-+..-.+-|.+.
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence 888888888888885555678888888888888888888888888887 78888777777766643
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.1e-39 Score=318.61 Aligned_cols=497 Identities=26% Similarity=0.300 Sum_probs=349.0
Q ss_pred cccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCC
Q 047152 132 FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKL 211 (776)
Q Consensus 132 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 211 (776)
.+..-..|+.|.+++|.+. .+...+.++..|.+|++++|++. ..|++++.+..++.|+.++|+++. +|+.++.+
T Consensus 40 ~wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls~---lp~~i~s~ 113 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLSE---LPEQIGSL 113 (565)
T ss_pred hhhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHhh---ccHHHhhh
Confidence 3444567889999999998 55567889999999999999987 788899999999999999999887 56888888
Q ss_pred CCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCC
Q 047152 212 HSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSL 291 (776)
Q Consensus 212 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 291 (776)
.+|..++.+.|.+... ++.++.+ -.|+.++..+|+++ +.|+.++++.+ +..+++.+|++....|..+. ++.|
T Consensus 114 ~~l~~l~~s~n~~~el-~~~i~~~---~~l~dl~~~~N~i~-slp~~~~~~~~--l~~l~~~~n~l~~l~~~~i~-m~~L 185 (565)
T KOG0472|consen 114 ISLVKLDCSSNELKEL-PDSIGRL---LDLEDLDATNNQIS-SLPEDMVNLSK--LSKLDLEGNKLKALPENHIA-MKRL 185 (565)
T ss_pred hhhhhhhccccceeec-CchHHHH---hhhhhhhccccccc-cCchHHHHHHH--HHHhhccccchhhCCHHHHH-HHHH
Confidence 8999999998888664 4455555 67888888888877 56777777777 78888888888765555554 8888
Q ss_pred CEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEE
Q 047152 292 RYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQL 370 (776)
Q Consensus 292 ~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L 370 (776)
++||...|.+..+|+.++.+.+|..|++..|++...+ .|.... .|++++++.|++...... ...++++.+|
T Consensus 186 ~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs------~L~Elh~g~N~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 186 KHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCS------LLKELHVGENQIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC--CCCccH------HHHHHHhcccHHHhhHHHHhcccccceee
Confidence 8888888888888888888888888888888776432 444444 677777777777643333 4577777777
Q ss_pred eccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCC
Q 047152 371 NLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKM 450 (776)
Q Consensus 371 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 450 (776)
|+..|+++ ..|+.+.-+.+|++||+++|.+++..+ .++++ .|+.|.+.+|.+...-..-+...+
T Consensus 258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~--sLgnl-hL~~L~leGNPlrTiRr~ii~~gT------------ 321 (565)
T KOG0472|consen 258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY--SLGNL-HLKFLALEGNPLRTIRREIISKGT------------ 321 (565)
T ss_pred eccccccc-cCchHHHHhhhhhhhcccCCccccCCc--ccccc-eeeehhhcCCchHHHHHHHHcccH------------
Confidence 77777777 667777777777777777777765433 36666 677777777776421110000000
Q ss_pred CCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCC--CCCCcEEEccC
Q 047152 451 GPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPL--PSNATSLNLSK 528 (776)
Q Consensus 451 ~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~--~~~L~~L~l~~ 528 (776)
.. -|++|. .++...-+... ...+. ...+. ..+..|.. ..+.+.|++++
T Consensus 322 ----~~-----------------vLKyLr---s~~~~dglS~s-e~~~e-~~~t~----~~~~~~~~~~~i~tkiL~~s~ 371 (565)
T KOG0472|consen 322 ----QE-----------------VLKYLR---SKIKDDGLSQS-EGGTE-TAMTL----PSESFPDIYAIITTKILDVSD 371 (565)
T ss_pred ----HH-----------------HHHHHH---HhhccCCCCCC-ccccc-ccCCC----CCCcccchhhhhhhhhhcccc
Confidence 00 011100 00000000000 00000 00000 00111111 34566777777
Q ss_pred CccccCCCccccCC--CCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccc
Q 047152 529 NKFSGSISFLCSLS--NRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEY 606 (776)
Q Consensus 529 n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~ 606 (776)
-+++..+.+.|..- .-....+++.|++. ++|..+..+..+.+.-+..|+..+.+|..++.+++|
T Consensus 372 ~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kL------------- 437 (565)
T KOG0472|consen 372 KQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKL------------- 437 (565)
T ss_pred cccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcc-------------
Confidence 77776655555432 23667788888887 677776666655544433444444777777766666
Q ss_pred ccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCC
Q 047152 607 KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLS 686 (776)
Q Consensus 607 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 686 (776)
..|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|..+..+..|+.+-.++|++....|+.+.++..|+
T Consensus 438 -------t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 438 -------TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred -------eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 78899999888 79999999999999999999999 7999999999999999999999977778899999999
Q ss_pred eeeCCCCcceecCCCCCcccccccccccCCCCC
Q 047152 687 VMDLSYNNLSGKIPLGTQLQSFNELVYAGNPEL 719 (776)
Q Consensus 687 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~l 719 (776)
+||+.+|.+....|.-+.+.++..+.+.|||+-
T Consensus 509 tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 999999999866566688999999999999764
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-35 Score=321.34 Aligned_cols=496 Identities=27% Similarity=0.285 Sum_probs=284.2
Q ss_pred cccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhcc
Q 047152 105 TPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSH 184 (776)
Q Consensus 105 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~ 184 (776)
|..+..-..++.|++++|.+-... -+++.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.+. ..+....+
T Consensus 14 p~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~ 89 (1081)
T KOG0618|consen 14 PEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR--SVPSSCSN 89 (1081)
T ss_pred chhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh--hCchhhhh
Confidence 333333344555555555444211 122333334555555555554 45555555555555555555554 33345555
Q ss_pred CCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCC
Q 047152 185 LSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSS 264 (776)
Q Consensus 185 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 264 (776)
+++|++|.|..|.+.. .|..+..+++|++|++++|.+.. +|..+..+ ..++.++.++|..... ++...
T Consensus 90 ~~~l~~lnL~~n~l~~---lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~l---t~~~~~~~s~N~~~~~----lg~~~- 157 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRLQS---LPASISELKNLQYLDLSFNHFGP-IPLVIEVL---TAEEELAASNNEKIQR----LGQTS- 157 (1081)
T ss_pred hhcchhheeccchhhc---CchhHHhhhcccccccchhccCC-CchhHHhh---hHHHHHhhhcchhhhh----hcccc-
Confidence 5555555555555554 34555556666666666665533 34444444 4555555665521111 11111
Q ss_pred CCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCc
Q 047152 265 SLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSL 344 (776)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L 344 (776)
++.+++..|.+.+.++..+..+++ .|+|++|.+.. ..+..+++|+.+....|+++...-. - ++|
T Consensus 158 --ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--~dls~~~~l~~l~c~rn~ls~l~~~----g------~~l 221 (1081)
T KOG0618|consen 158 --IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--LDLSNLANLEVLHCERNQLSELEIS----G------PSL 221 (1081)
T ss_pred --chhhhhhhhhcccchhcchhhhhe--eeecccchhhh--hhhhhccchhhhhhhhcccceEEec----C------cch
Confidence 556666666666666666666555 67777776662 3455666677777777666543211 1 167
Q ss_pred cEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCC
Q 047152 345 EWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADN 424 (776)
Q Consensus 345 ~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 424 (776)
+.|+.++|.++...+. ..-.+|+++++++|+++ .+|++++.+.+|+.++..+|+++ .+|. .+....+|+.|++..|
T Consensus 222 ~~L~a~~n~l~~~~~~-p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~-ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 222 TALYADHNPLTTLDVH-PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPL-RISRITSLVSLSAAYN 297 (1081)
T ss_pred heeeeccCcceeeccc-cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHH-HHhhhhhHHHHHhhhh
Confidence 7777777777633322 23356777777777777 44577777777777777777774 3444 3555667777777777
Q ss_pred ccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhcc-CcccEEEcccccCcccCCcccccccCCCCeE
Q 047152 425 SLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLT-HQRMLLNLSSNQMRGKVPDLSLRFDISGPGI 503 (776)
Q Consensus 425 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~-~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l 503 (776)
++.. +|....+...|+.|++..|++. .+|. .++... ..+..++.+.|++. ..|.+.-
T Consensus 298 el~y-ip~~le~~~sL~tLdL~~N~L~-~lp~----------~~l~v~~~~l~~ln~s~n~l~-~lp~~~e--------- 355 (1081)
T KOG0618|consen 298 ELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPD----------NFLAVLNASLNTLNVSSNKLS-TLPSYEE--------- 355 (1081)
T ss_pred hhhh-CCCcccccceeeeeeehhcccc-ccch----------HHHhhhhHHHHHHhhhhcccc-ccccccc---------
Confidence 7663 3444555666667777666654 2222 111111 12444444444443 1111000
Q ss_pred eccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccC
Q 047152 504 DISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKI 583 (776)
Q Consensus 504 ~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 583 (776)
...+.|+.|++.+|.++...-..+.+..+|++|+|++|++......++.++..|+.|+||+|+++ .+
T Consensus 356 ------------~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~L 422 (1081)
T KOG0618|consen 356 ------------NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TL 422 (1081)
T ss_pred ------------hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hh
Confidence 01345667777777777666666677778888888888887443455677788888888888887 66
Q ss_pred CccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCe
Q 047152 584 PNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDF 663 (776)
Q Consensus 584 p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 663 (776)
|.++..+..| ++|...+|++. ..| ++.+++.|+.+|+|.|+++...-..-..-++|++
T Consensus 423 p~tva~~~~L--------------------~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 423 PDTVANLGRL--------------------HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred hHHHHhhhhh--------------------HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccce
Confidence 7777766666 45566667776 556 6777777888888877776332222222267888
Q ss_pred eeCcCceeeecCCccCcCCCCCCeeeCCCC
Q 047152 664 LDLSRNQFFGGIPSSLSQLSGLSVMDLSYN 693 (776)
Q Consensus 664 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 693 (776)
||+++|.-....-..|..+.++...++.-|
T Consensus 481 LdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 481 LDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred eeccCCcccccchhhhHHhhhhhheecccC
Confidence 888887643344455555666666666555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1e-34 Score=314.86 Aligned_cols=476 Identities=27% Similarity=0.328 Sum_probs=264.3
Q ss_pred EecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccC
Q 047152 142 LGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYS 221 (776)
Q Consensus 142 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~ 221 (776)
+|++.++++ .||..+-.-..++.|++++|.+.. .+.+.+.+.-+|+.||+++|.+..+ |..+..+..|+.|+++.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~-~pl~~~~~~v~L~~l~lsnn~~~~f---p~~it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLS-RPLEFVEKRVKLKSLDLSNNQISSF---PIQITLLSHLRQLNLSR 77 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhcccccccc-CchHHhhheeeeEEeeccccccccC---CchhhhHHHHhhcccch
Confidence 455556655 556555544446666666666543 2234444444566777777666653 34445555555555555
Q ss_pred CCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCC
Q 047152 222 CDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNEL 301 (776)
Q Consensus 222 n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 301 (776)
|.+.. .|.+..++ ++|+++.|..|.+. . .|..+..+++|++|+++.|.+
T Consensus 78 n~i~~-vp~s~~~~---~~l~~lnL~~n~l~-~--------------------------lP~~~~~lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 78 NYIRS-VPSSCSNM---RNLQYLNLKNNRLQ-S--------------------------LPASISELKNLQYLDLSFNHF 126 (1081)
T ss_pred hhHhh-Cchhhhhh---hcchhheeccchhh-c--------------------------CchhHHhhhcccccccchhcc
Confidence 55433 22333333 55555555555543 3 444445555555555555555
Q ss_pred CCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCcccccc
Q 047152 302 RGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGT 380 (776)
Q Consensus 302 ~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 380 (776)
..+|..+..+..+..+..++|.... .++.. .++.+++..|.+.+.++. +..+.. .|||++|.+.
T Consensus 127 ~~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~-------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-- 191 (1081)
T KOG0618|consen 127 GPIPLVIEVLTAEEELAASNNEKIQ----RLGQT-------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-- 191 (1081)
T ss_pred CCCchhHHhhhHHHHHhhhcchhhh----hhccc-------cchhhhhhhhhcccchhcchhhhhe--eeecccchhh--
Confidence 5555555555555555555541111 11111 244444444444443333 333333 4555555554
Q ss_pred chhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhc
Q 047152 381 IHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQT 460 (776)
Q Consensus 381 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 460 (776)
...+..+.+|+.+....|++.... ...++|+.|+.++|.++... ......+|+++++++|+++ .+|.|+..
T Consensus 192 -~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~-~lp~wi~~ 262 (1081)
T KOG0618|consen 192 -VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLS-NLPEWIGA 262 (1081)
T ss_pred -hhhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcceeec--cccccccceeeecchhhhh-cchHHHHh
Confidence 123344555555555555553221 12345555555555555211 1122335566666666554 33344443
Q ss_pred cCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCC--CCCCcEEEccCCccccCCCcc
Q 047152 461 QNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPL--PSNATSLNLSKNKFSGSISFL 538 (776)
Q Consensus 461 ~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~--~~~L~~L~l~~n~l~~~~~~~ 538 (776)
+.+++.++..+|++. .+|. .+.....++.+++..|.++-..|.. ...|++|++..|++....+..
T Consensus 263 -----------~~nle~l~~n~N~l~-~lp~-ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~ 329 (1081)
T KOG0618|consen 263 -----------CANLEALNANHNRLV-ALPL-RISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNF 329 (1081)
T ss_pred -----------cccceEecccchhHH-hhHH-HHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHH
Confidence 345777777777773 3443 2333333466666667666443332 567888888888887666655
Q ss_pred ccCCCC-ccEEECcCCcccccCCh-hhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccc----ccccc
Q 047152 539 CSLSNR-LIYLDLSNNLLSGKLPD-CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYK----STLGL 612 (776)
Q Consensus 539 ~~~l~~-L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~----~~l~~ 612 (776)
+..... |+.|+.+.|++. ..|. .=..+..|+.|++.+|.++...-..+.+...|+.|+|+++.+..++ .++..
T Consensus 330 l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred HhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH
Confidence 554443 677777777776 3331 1123567788888888887776666777777766666665444333 35566
Q ss_pred ccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecC-CccCcCCCCCCeeeCC
Q 047152 613 VKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGI-PSSLSQLSGLSVMDLS 691 (776)
Q Consensus 613 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls 691 (776)
|+.|+||+|+++ .+|..+..++.|++|...+|++. ..| .+.++++|+.+|+|.|+++... |... .-++|++||++
T Consensus 409 LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlS 484 (1081)
T KOG0618|consen 409 LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLS 484 (1081)
T ss_pred hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeecc
Confidence 677777777777 67777777777777777777776 456 6777777777777777776443 3322 22677777777
Q ss_pred CCcc
Q 047152 692 YNNL 695 (776)
Q Consensus 692 ~N~l 695 (776)
+|..
T Consensus 485 GN~~ 488 (1081)
T KOG0618|consen 485 GNTR 488 (1081)
T ss_pred CCcc
Confidence 7763
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.1e-34 Score=296.99 Aligned_cols=388 Identities=29% Similarity=0.399 Sum_probs=235.2
Q ss_pred CCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCc
Q 047152 110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI 189 (776)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 189 (776)
-++..+-.|+++|.|+|..+|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++.. ..
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~--vh---------- 71 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS--VH---------- 71 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh--hh----------
Confidence 35667778888888887778888888888888888888887 788888888888888888877642 11
Q ss_pred EEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCE
Q 047152 190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDR 269 (776)
Q Consensus 190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~ 269 (776)
..++.++. |+.+++..|++..
T Consensus 72 ----------------GELs~Lp~---------------------------LRsv~~R~N~LKn---------------- 92 (1255)
T KOG0444|consen 72 ----------------GELSDLPR---------------------------LRSVIVRDNNLKN---------------- 92 (1255)
T ss_pred ----------------hhhccchh---------------------------hHHHhhhcccccc----------------
Confidence 22222223 3333333333221
Q ss_pred EEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEc
Q 047152 270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL 349 (776)
Q Consensus 270 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L 349 (776)
.-+|..+..+..|+.|||++|++.+.|..+..-+++-+|+||+|+|..++...+.++. .|-.|||
T Consensus 93 ---------sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt------DLLfLDL 157 (1255)
T KOG0444|consen 93 ---------SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT------DLLFLDL 157 (1255)
T ss_pred ---------CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH------hHhhhcc
Confidence 0133334444444555555555555555555555555555555555544444444554 5555666
Q ss_pred ccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCcccc-ccccHHhhhCCCCCcEEECCCCccce
Q 047152 350 SSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLG-GVISEALFSNLSRLAALDLADNSLTL 428 (776)
Q Consensus 350 ~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~ 428 (776)
++|++...+|.+..+..|++|+|++|.+...--..+..+++|+.|.+++.+-+ ..+|. .+..+.+|..+|+|.|.+.
T Consensus 158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp- 235 (1255)
T KOG0444|consen 158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP- 235 (1255)
T ss_pred ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC-
Confidence 66666555555555556666666666554322223333444555555544322 12232 3344444444444444332
Q ss_pred ecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCC
Q 047152 429 EFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSN 508 (776)
Q Consensus 429 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n 508 (776)
.+ |+.++.
T Consensus 236 ------------------------~v----------Pecly~-------------------------------------- 243 (1255)
T KOG0444|consen 236 ------------------------IV----------PECLYK-------------------------------------- 243 (1255)
T ss_pred ------------------------cc----------hHHHhh--------------------------------------
Confidence 11 111110
Q ss_pred cccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc-ccCCccc
Q 047152 509 HFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF-GKIPNSM 587 (776)
Q Consensus 509 ~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~ 587 (776)
+.+|+.|++++|+|+...- ......+|+.|++|.|+++ .+|++++.++.|+.|.+.+|+++ .-+|..+
T Consensus 244 ---------l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 244 ---------LRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred ---------hhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 1223333333333332111 1122467899999999998 89999999999999999999885 3477778
Q ss_pred cccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCc
Q 047152 588 GFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLS 667 (776)
Q Consensus 588 ~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 667 (776)
+.+.+| +++..++|.+. ..|+.+..+..|+.|.|++|++. .+|+.+.-++.|++||+.
T Consensus 313 GKL~~L--------------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 313 GKLIQL--------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred hhhhhh--------------------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence 777766 67788888888 89999999999999999999988 689999999999999999
Q ss_pred CceeeecCCccCcCCCCCCeeeCC
Q 047152 668 RNQFFGGIPSSLSQLSGLSVMDLS 691 (776)
Q Consensus 668 ~N~l~~~~p~~l~~l~~L~~L~ls 691 (776)
.|.-.-..|.-=..-++|+.-++.
T Consensus 371 eNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 371 ENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CCcCccCCCCcchhhhcceeeecc
Confidence 997653333222222456655443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-32 Score=285.57 Aligned_cols=319 Identities=27% Similarity=0.329 Sum_probs=268.0
Q ss_pred CcEEEEECCCCCCCCCCCc-eeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCC
Q 047152 83 GHVNKLDLQPIGFDSFPLR-GKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLS 161 (776)
Q Consensus 83 ~~v~~L~L~~~~~~~~~l~-g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 161 (776)
.-|+.+|+++ +.++ +.+|.....++.++.|.|.+..+. .+|+.++.+.+|++|.+++|++. .+-..++.++
T Consensus 7 pFVrGvDfsg-----NDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp 78 (1255)
T KOG0444|consen 7 PFVRGVDFSG-----NDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLP 78 (1255)
T ss_pred ceeecccccC-----CcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccch
Confidence 3688999999 6677 578999999999999999999998 68999999999999999999998 6667889999
Q ss_pred CCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCc
Q 047152 162 RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSL 241 (776)
Q Consensus 162 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L 241 (776)
.|+.+++.+|++...+.|..+.++..|..||||+|++.. .|..+...+++-+|+|++|++..+.-..+.++ ..|
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E---vP~~LE~AKn~iVLNLS~N~IetIPn~lfinL---tDL 152 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE---VPTNLEYAKNSIVLNLSYNNIETIPNSLFINL---TDL 152 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhhh---cchhhhhhcCcEEEEcccCccccCCchHHHhh---HhH
Confidence 999999999999888899999999999999999999998 46788889999999999999988777777888 889
Q ss_pred cEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC--CchhhcccCCCcEEec
Q 047152 242 EVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG--IPKFLGNMCGLKILYL 319 (776)
Q Consensus 242 ~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--ip~~l~~l~~L~~L~L 319 (776)
-+||||+|++. .+|+.+..+.. |+.|.|++|.+.-.--..+..++.|+.|.+++.+-+- +|.++..+.+|..+++
T Consensus 153 LfLDLS~NrLe-~LPPQ~RRL~~--LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 153 LFLDLSNNRLE-MLPPQIRRLSM--LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hhhccccchhh-hcCHHHHHHhh--hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 99999999987 67888888888 9999999998765444456677888889998876544 8999999999999999
Q ss_pred cCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCc
Q 047152 320 SGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGN 399 (776)
Q Consensus 320 s~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N 399 (776)
|.|.+. ..|..+-.++ +|+.|+|++|+++..-...+...+|++|++|.|+++ .+|..+.++++|+.|.+.+|
T Consensus 230 S~N~Lp-~vPecly~l~------~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 230 SENNLP-IVPECLYKLR------NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred cccCCC-cchHHHhhhh------hhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccC
Confidence 999886 5677777777 888999999988866555677778888888888888 77888888888888888888
Q ss_pred ccccc-ccHHhhhCCCCCcEEECCCCccc
Q 047152 400 SLGGV-ISEALFSNLSRLAALDLADNSLT 427 (776)
Q Consensus 400 ~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~ 427 (776)
+++-. +|. .++.+.+|+.+...+|.+.
T Consensus 302 kL~FeGiPS-GIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 302 KLTFEGIPS-GIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred cccccCCcc-chhhhhhhHHHHhhccccc
Confidence 87632 343 4666666666666666554
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.1e-21 Score=236.80 Aligned_cols=304 Identities=22% Similarity=0.252 Sum_probs=176.8
Q ss_pred CccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECC
Q 047152 343 SLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLA 422 (776)
Q Consensus 343 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 422 (776)
+|+.|++.++.+...+..+ ...+|+.|++++|++. .++..+..+++|+.|+++++...+.+|. +..+++|++|+++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEec
Confidence 4555555555544222222 3445555555555554 3444445555555555555443334442 4445555555555
Q ss_pred CCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCe
Q 047152 423 DNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPG 502 (776)
Q Consensus 423 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~ 502 (776)
+|.....+|..+..+.+|+.|++++|...+.+|..+ .+.+|+.|++++|...+.+|.. ...++.
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i------------~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~ 729 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI------------NLKSLYRLNLSGCSRLKSFPDI----STNISW 729 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC------------CCCCCCEEeCCCCCCccccccc----cCCcCe
Confidence 554444445555555555555555554333333221 1234555555555444444331 112245
Q ss_pred EeccCCcccccCCCC--CCCCcEEEccCCccc-------cCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEe
Q 047152 503 IDISSNHFEGPIPPL--PSNATSLNLSKNKFS-------GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILN 573 (776)
Q Consensus 503 l~l~~n~l~g~~p~~--~~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 573 (776)
+++++|.+.. +|.. +++|++|++.++... ...+......++|+.|+|++|...+.+|..++++++|+.|+
T Consensus 730 L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 730 LDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred eecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 5555555432 3332 456666666653221 11222233356788888888887778888888888899999
Q ss_pred ccCCcccccCCccccccCCCcEEecCCCcccc-cccccccccEEEccCCCCccCCchhhhccccCCEEECcCC-cccCcC
Q 047152 574 LANNNFFGKIPNSMGFLHNIRSLSLYNRSQYE-YKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRN-NLTGQI 651 (776)
Q Consensus 574 Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~ 651 (776)
+++|...+.+|..+ .+++|+.|+++++.... +.....+++.|+|++|.++ .+|..++.+++|+.|+|++| +++ .+
T Consensus 809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l 885 (1153)
T PLN03210 809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RV 885 (1153)
T ss_pred CCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-cc
Confidence 98886666777765 67888888887754332 2334467788888888887 67878888888888888874 444 57
Q ss_pred cccccCcCCCCeeeCcCce
Q 047152 652 TPKIGQLKSLDFLDLSRNQ 670 (776)
Q Consensus 652 p~~l~~l~~L~~L~Ls~N~ 670 (776)
|..+..+++|+.|++++|.
T Consensus 886 ~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CcccccccCCCeeecCCCc
Confidence 7777788888888888774
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=3.6e-24 Score=212.27 Aligned_cols=293 Identities=24% Similarity=0.263 Sum_probs=198.1
Q ss_pred EeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccC-
Q 047152 117 LDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDL- 195 (776)
Q Consensus 117 L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~- 195 (776)
.|-++-.++ ++|..+. ..-..++|..|+|+...|.+|+.+++|+.||||+|+|.. ..++.|.++++|..|-+.+
T Consensus 51 VdCr~~GL~--eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT--EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc--cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcC
Confidence 344444555 4666554 466788899999997667789999999999999999876 6677788887777776655
Q ss_pred CCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCC
Q 047152 196 NDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSN 275 (776)
Q Consensus 196 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n 275 (776)
|+|+.++. ..|+++.+|+.|.+.-|++.......|..+ ++|..|.+..|.+.
T Consensus 126 NkI~~l~k--~~F~gL~slqrLllNan~i~Cir~~al~dL---~~l~lLslyDn~~q----------------------- 177 (498)
T KOG4237|consen 126 NKITDLPK--GAFGGLSSLQRLLLNANHINCIRQDALRDL---PSLSLLSLYDNKIQ----------------------- 177 (498)
T ss_pred Cchhhhhh--hHhhhHHHHHHHhcChhhhcchhHHHHHHh---hhcchhcccchhhh-----------------------
Confidence 77777542 556666666666666666666555665555 55555555555443
Q ss_pred ccccCcchhhcCCCCCCEEEccCCCCCC---C----------chhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCC
Q 047152 276 QLQGSIPEAFGRMVSLRYLDLSSNELRG---I----------PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342 (776)
Q Consensus 276 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~---i----------p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~ 342 (776)
..-...|..+..++.+.+..|.+.. + |..++..+...-..+.+.++..+.+..|..- ..
T Consensus 178 ---~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-----~e 249 (498)
T KOG4237|consen 178 ---SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS-----LE 249 (498)
T ss_pred ---hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh-----HH
Confidence 2222245555555555555554221 1 2222333333333333444433333333221 01
Q ss_pred CccEEEcccccccccCCC--ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEE
Q 047152 343 SLEWLHLSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALD 420 (776)
Q Consensus 343 ~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 420 (776)
.+..=..+.+...+.-|. |..+++|++|++++|++++.-+.+|.....+++|.|..|++. .+....|.++..|+.|+
T Consensus 250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLS 328 (498)
T ss_pred hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeee
Confidence 222222334444445555 899999999999999999999999999999999999999995 55556899999999999
Q ss_pred CCCCccceecCCCCCCCCCCcEEEccCcCCC
Q 047152 421 LADNSLTLEFSHDWIPPFQLNTISLGHCKMG 451 (776)
Q Consensus 421 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 451 (776)
|++|+|+...|..|.....|.++.+-.|.+-
T Consensus 329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 329 LYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred ecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999999999999999999999999888764
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3e-21 Score=235.40 Aligned_cols=320 Identities=22% Similarity=0.240 Sum_probs=188.3
Q ss_pred cchhhcCCC-CCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCC
Q 047152 281 IPEAFGRMV-SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP 359 (776)
Q Consensus 281 ~p~~l~~l~-~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~ 359 (776)
+|..|..++ +|+.|++.++.+..+|..+ ...+|++|++.+|.+.. ++..+..++ +|+.|+|+++...+.+|
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~------~Lk~L~Ls~~~~l~~ip 651 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLT------GLRNIDLRGSKNLKEIP 651 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc-cccccccCC------CCCEEECCCCCCcCcCC
Confidence 444444443 4666666666666666555 34566666666665543 233333444 56666666655444555
Q ss_pred CccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCC
Q 047152 360 NLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQ 439 (776)
Q Consensus 360 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 439 (776)
.+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|.. + ++++|+.|++++|......|.. ..+
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~---~~n 726 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDI---STN 726 (1153)
T ss_pred ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccc---cCC
Confidence 5566666666666665554555666666666666666665443444441 1 4556666666665433333221 234
Q ss_pred CcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCC
Q 047152 440 LNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPS 519 (776)
Q Consensus 440 L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~ 519 (776)
|+.|++++|.+. .+|..+ .+++|..|++.++.... ++. .. ..+.......++
T Consensus 727 L~~L~L~~n~i~-~lP~~~------------~l~~L~~L~l~~~~~~~-l~~-~~-------------~~l~~~~~~~~~ 778 (1153)
T PLN03210 727 ISWLDLDETAIE-EFPSNL------------RLENLDELILCEMKSEK-LWE-RV-------------QPLTPLMTMLSP 778 (1153)
T ss_pred cCeeecCCCccc-cccccc------------cccccccccccccchhh-ccc-cc-------------cccchhhhhccc
Confidence 555555555542 222211 12234444443322110 000 00 000000111246
Q ss_pred CCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecC
Q 047152 520 NATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLY 599 (776)
Q Consensus 520 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 599 (776)
+|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. ..+|++|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 78888888887777778888888888888888876555777665 6788888888887665555543 3578888888
Q ss_pred CCcccccc---cccccccEEEccCC-CCccCCchhhhccccCCEEECcCCc
Q 047152 600 NRSQYEYK---STLGLVKILDLSSN-KLGGGVPKEIMDLVGLVALNLSRNN 646 (776)
Q Consensus 600 ~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~ 646 (776)
++.+.+++ ..+++|+.|++++| ++. .+|..+..++.|+.+++++|.
T Consensus 855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCccChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 76655443 46788899999985 455 688889999999999999985
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=5.4e-24 Score=211.05 Aligned_cols=369 Identities=25% Similarity=0.287 Sum_probs=236.5
Q ss_pred CCCCEEEccCCCCCCCc-hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc-ccccccCCC-ccCCC
Q 047152 289 VSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS-NEITGSMPN-LGEFS 365 (776)
Q Consensus 289 ~~L~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~-n~l~~~~~~-l~~l~ 365 (776)
+.-..++|..|+|+.|| ..|+.+++|+.|+|++|.|+.+.|..|..++ +|.+|-+.+ |+|+..... |+++.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~------~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA------SLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH------hhhHHHhhcCCchhhhhhhHhhhHH
Confidence 35677888888888877 4688888888888888888888888888887 665555555 777755444 88888
Q ss_pred CCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCC-CCcEEE
Q 047152 366 SLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPF-QLNTIS 444 (776)
Q Consensus 366 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~ 444 (776)
+|+.|.+.-|++.-.....|..+++|..|.+.+|.+. .++...|..+..++.+.+..|.+.....-.|..-. ......
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 8888888888888777777888888888888888774 55555677788888888877774322111110000 000000
Q ss_pred ccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCccccc-ccCCCCeEeccCCcccccCCC----CCC
Q 047152 445 LGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLR-FDISGPGIDISSNHFEGPIPP----LPS 519 (776)
Q Consensus 445 l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~-~~~~l~~l~l~~n~l~g~~p~----~~~ 519 (776)
.++- .-..|..+ .++++...-+. .+. ....+..-..+.+...+..|. .++
T Consensus 220 tsga--rc~~p~rl----------------------~~~Ri~q~~a~-kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~ 274 (498)
T KOG4237|consen 220 TSGA--RCVSPYRL----------------------YYKRINQEDAR-KFLCSLESLPSRLSSEDFPDSICPAKCFKKLP 274 (498)
T ss_pred cccc--eecchHHH----------------------HHHHhcccchh-hhhhhHHhHHHhhccccCcCCcChHHHHhhcc
Confidence 0000 00111111 11111100000 000 000000001111222223332 267
Q ss_pred CCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecC
Q 047152 520 NATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLY 599 (776)
Q Consensus 520 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 599 (776)
+|++|++++|+++++-+.+|.....++.|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|++-
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 88899999999998888888888899999999999887667778888899999999999988888888888888888875
Q ss_pred CCccc---------ccc-----------cccccccEEEccCCCCc---cCCchhhhc------------------c----
Q 047152 600 NRSQY---------EYK-----------STLGLVKILDLSSNKLG---GGVPKEIMD------------------L---- 634 (776)
Q Consensus 600 ~~~~~---------~~~-----------~~l~~L~~L~Ls~N~l~---~~~p~~l~~------------------l---- 634 (776)
.++.. ++. .....++.++++.+.+. ...|++.+- +
T Consensus 355 ~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~ 434 (498)
T KOG4237|consen 355 SNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKL 434 (498)
T ss_pred cCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccc
Confidence 52210 000 01233455555544332 122222211 0
Q ss_pred ---------ccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCC
Q 047152 635 ---------VGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYN 693 (776)
Q Consensus 635 ---------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 693 (776)
..-.+|++.+|.++ .+|.+ .+.+| .+|+++|+++...-..|.++++|.+|-+|||
T Consensus 435 lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 435 LKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 12356888899988 67776 67788 8999999998777788889999999998887
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.7e-21 Score=217.39 Aligned_cols=159 Identities=30% Similarity=0.326 Sum_probs=112.8
Q ss_pred CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152 501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF 580 (776)
Q Consensus 501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (776)
+.|++++|++++ +|..+.+|+.|++++|++++. |.. ..+|++|+|++|+|+ .+|.. ..+|+.|++++|+++
T Consensus 305 ~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~L-P~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 305 QELSVSDNQLAS-LPALPSELCKLWAYNNQLTSL-PTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT 375 (788)
T ss_pred ceeECCCCcccc-CCCCcccccccccccCccccc-ccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc
Confidence 333444444433 333345677888888888753 321 246888888888888 45543 346778888888887
Q ss_pred ccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCC
Q 047152 581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKS 660 (776)
Q Consensus 581 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 660 (776)
+ +|... ..|+.|++++|+|+ .+|.. .++|+.|++++|+++ .+|.. ..+
T Consensus 376 ~-LP~l~-----------------------~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~ 423 (788)
T PRK15387 376 S-LPALP-----------------------SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSG 423 (788)
T ss_pred c-Ccccc-----------------------cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhh
Confidence 3 55421 23478899999998 46643 357889999999998 47754 356
Q ss_pred CCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152 661 LDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 661 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
|+.|++++|+++ .+|..+.++++|+.|++++|+|+|.+|.
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 788999999998 7898899999999999999999987764
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3e-21 Score=218.07 Aligned_cols=132 Identities=28% Similarity=0.348 Sum_probs=102.4
Q ss_pred CCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCC
Q 047152 514 IPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNI 593 (776)
Q Consensus 514 ~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 593 (776)
+|..+.+|+.|++++|+|++.. .. .++|+.|++++|+++ .+|.. ..+|+.|++++|++++ +|... +
T Consensus 337 LP~lp~~Lq~LdLS~N~Ls~LP-~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l~---s-- 402 (788)
T PRK15387 337 LPTLPSGLQELSVSDNQLASLP-TL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVLP---S-- 402 (788)
T ss_pred ccccccccceEecCCCccCCCC-CC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCcc---c--
Confidence 3333467888999999888643 22 357888999999998 46654 3579999999999984 55422 2
Q ss_pred cEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeee
Q 047152 594 RSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFG 673 (776)
Q Consensus 594 ~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 673 (776)
.|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..++++++|+.|+|++|++++
T Consensus 403 ------------------~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 403 ------------------ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred ------------------CCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 3478899999998 477543 46788999999998 789999999999999999999999
Q ss_pred cCCccCcCC
Q 047152 674 GIPSSLSQL 682 (776)
Q Consensus 674 ~~p~~l~~l 682 (776)
.+|..+..+
T Consensus 460 ~~~~~L~~l 468 (788)
T PRK15387 460 RTLQALREI 468 (788)
T ss_pred hHHHHHHHH
Confidence 888877443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=2.7e-18 Score=195.80 Aligned_cols=298 Identities=21% Similarity=0.261 Sum_probs=148.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCC---CCCCCCCCCCCCCCCCCccc----------------eeeCCCCCcEEEEECCCC
Q 047152 33 KTRCIDEEREALLTFKASLVDES---GILSSWRREDEKRDCCKWTG----------------VGCSKRTGHVNKLDLQPI 93 (776)
Q Consensus 33 ~~~~~~~~~~~ll~~k~~~~~~~---~~~~~W~~~~~~~~~c~w~g----------------v~c~~~~~~v~~L~L~~~ 93 (776)
.....++|...+++..+.+..|. ..-+.|. ...+.|.-+. |.|. .+.|+.+...+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~---~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~ 131 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRG---GADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTES 131 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccC---CCCcccccCCcchhhheeeecCCceEEecC--CCcccccccccc
Confidence 44456788899999999887664 2344587 3667775443 5564 345666665552
Q ss_pred CCCCC-----CC---------------cee---ccccc-----cCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecC
Q 047152 94 GFDSF-----PL---------------RGK---ITPAL-----LKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLS 145 (776)
Q Consensus 94 ~~~~~-----~l---------------~g~---~~~~l-----~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls 145 (776)
..... .. .+. -..++ +-..+...|+++++.++ .+|..+. ++|++|+|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt--sLP~~Ip--~~L~~L~Ls 207 (754)
T PRK15370 132 EQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT--TIPACIP--EQITTLILD 207 (754)
T ss_pred cccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC--cCCcccc--cCCcEEEec
Confidence 10000 00 000 00001 11234566777776666 3555443 467777777
Q ss_pred CCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCC
Q 047152 146 SAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLP 225 (776)
Q Consensus 146 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 225 (776)
+|+++ .+|..+. .+|++|++++|++.. .+..+. .+|+.|++++|.+..++ ..+. ++|++|++++|++.
T Consensus 208 ~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~~LP---~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 208 NNELK-SLPENLQ--GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRITELP---ERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred CCCCC-cCChhhc--cCCCEEECCCCcccc--CChhhh--ccccEEECcCCccCcCC---hhHh--CCCCEEECcCCccC
Confidence 77766 4555443 467777777766652 222222 35666666666666532 2222 35666666666655
Q ss_pred CCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc
Q 047152 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP 305 (776)
Q Consensus 226 ~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip 305 (776)
. +|..+. ++|+.|++++|++++ +|..+. .. ++.|++++|+++. +|..+ .++|+.|++++|.++.+|
T Consensus 276 ~-LP~~l~-----~sL~~L~Ls~N~Lt~-LP~~lp--~s--L~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP 341 (754)
T PRK15370 276 C-LPENLP-----EELRYLSVYDNSIRT-LPAHLP--SG--ITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLP 341 (754)
T ss_pred c-cccccC-----CCCcEEECCCCcccc-Ccccch--hh--HHHHHhcCCcccc-CCccc--cccceeccccCCccccCC
Confidence 3 333221 355666666665553 232221 12 5555555555553 23222 134555555555555555
Q ss_pred hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCcccc
Q 047152 306 KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLN 378 (776)
Q Consensus 306 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~ 378 (776)
..+. ++|+.|++++|.++. +|..+. + +|++|++++|.++..++.+. ..|+.|++++|+++
T Consensus 342 ~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~------~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 342 ASLP--PELQVLDVSKNQITV-LPETLP--P------TITTLDVSRNALTNLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred hhhc--CcccEEECCCCCCCc-CChhhc--C------CcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcc
Confidence 4332 345555555555442 222221 1 45555555555543322221 23444455555444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.4e-18 Score=196.15 Aligned_cols=252 Identities=25% Similarity=0.351 Sum_probs=191.0
Q ss_pred eeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCc
Q 047152 76 VGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPH 155 (776)
Q Consensus 76 v~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 155 (776)
..|.. ...+.|++++ ..+. .+|..+. ++|+.|+|++|.++ .+|..+. .+|++|++++|+++ .+|.
T Consensus 173 ~~Cl~--~~~~~L~L~~-----~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt--sLP~~l~--~nL~~L~Ls~N~Lt-sLP~ 237 (754)
T PRK15370 173 RDCLK--NNKTELRLKI-----LGLT-TIPACIP--EQITTLILDNNELK--SLPENLQ--GNIKTLYANSNQLT-SIPA 237 (754)
T ss_pred Hhhcc--cCceEEEeCC-----CCcC-cCCcccc--cCCcEEEecCCCCC--cCChhhc--cCCCEEECCCCccc-cCCh
Confidence 35532 4568899988 4444 3454443 57999999999999 4777664 59999999999998 6787
Q ss_pred cCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcC
Q 047152 156 QLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNL 235 (776)
Q Consensus 156 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 235 (776)
.+. .+|+.|+|++|++. ..+..+. ++|+.|++++|+++.++ ..+. ++|++|++++|++++. |..+.
T Consensus 238 ~l~--~~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~~LP---~~l~--~sL~~L~Ls~N~Lt~L-P~~lp-- 303 (754)
T PRK15370 238 TLP--DTIQEMELSINRIT--ELPERLP--SALQSLDLFHNKISCLP---ENLP--EELRYLSVYDNSIRTL-PAHLP-- 303 (754)
T ss_pred hhh--ccccEEECcCCccC--cCChhHh--CCCCEEECcCCccCccc---cccC--CCCcEEECCCCccccC-cccch--
Confidence 654 57999999999987 3444443 58999999999998753 3332 5899999999999864 43332
Q ss_pred CCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCc
Q 047152 236 NSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLK 315 (776)
Q Consensus 236 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~ 315 (776)
++|+.|++++|+++. +|..+. ++ |+.|++++|.+++ +|..+. ++|+.|++++|+++.+|..+. ++|+
T Consensus 304 ---~sL~~L~Ls~N~Lt~-LP~~l~--~s--L~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~ 370 (754)
T PRK15370 304 ---SGITHLNVQSNSLTA-LPETLP--PG--LKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETLP--PTIT 370 (754)
T ss_pred ---hhHHHHHhcCCcccc-CCcccc--cc--ceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhhc--CCcC
Confidence 578999999999985 454332 35 9999999999986 666553 799999999999999987664 6899
Q ss_pred EEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC----ccCCCCCCEEeccCcccc
Q 047152 316 ILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN----LGEFSSLKQLNLENNLLN 378 (776)
Q Consensus 316 ~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~Ls~n~l~ 378 (776)
+|++++|.++.. |..+.. .|+.|++++|++++.+.. ...++.+..|++.+|.++
T Consensus 371 ~LdLs~N~Lt~L-P~~l~~--------sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 371 TLDVSRNALTNL-PENLPA--------ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred EEECCCCcCCCC-CHhHHH--------HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 999999999965 444432 699999999999854322 334567778888888776
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=1e-18 Score=185.61 Aligned_cols=60 Identities=27% Similarity=0.324 Sum_probs=33.0
Q ss_pred CCCCEEeccCccccc----cchhcccCCCCCcEEECCCcccccc----ccHHhhhCC-CCCcEEECCCCc
Q 047152 365 SSLKQLNLENNLLNG----TIHKSIGQLFKLEMLKLNGNSLGGV----ISEALFSNL-SRLAALDLADNS 425 (776)
Q Consensus 365 ~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~----~~~~~~~~l-~~L~~L~Ls~n~ 425 (776)
+.|+.|++++|.+++ .+...+..+++|+++++++|.++.. +.. .+... +.|+++++.+|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE-SLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH-HHhhcCCchhhcccCCCC
Confidence 566666666666652 2233444556677777777776533 222 12222 566777766664
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=7.1e-18 Score=179.08 Aligned_cols=259 Identities=27% Similarity=0.259 Sum_probs=135.7
Q ss_pred EEecCCCCCCC-CCCccCCCCCCCCEEeccCCCCCCC---CCchhhccCCCCcEEEccCCCCCCc----chhhHhhcCCC
Q 047152 141 YLGLSSAEFAG-PIPHQLGNLSRLQFLDLSFNNLFSG---ENLDWLSHLSSLIYLYLDLNDLSNF----SNWVQLLSKLH 212 (776)
Q Consensus 141 ~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~~~~---~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~l~~l~ 212 (776)
.|+|..+.+++ ..+..+..+.+|++|+++++.+... .....+...++|++|+++++.+... ..++..+.+++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46666666663 3334455666677777777766431 1122345556677777766665521 12234455566
Q ss_pred CCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCC-CCC
Q 047152 213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRM-VSL 291 (776)
Q Consensus 213 ~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L 291 (776)
+|++|++++|.+.+..+..+..+...++|++|++++|++.+..... +...+..+ ++|
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~----------------------l~~~l~~~~~~L 139 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL----------------------LAKGLKDLPPAL 139 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH----------------------HHHHHHhCCCCc
Confidence 6666666666665555555444411123666666666554321111 11222333 445
Q ss_pred CEEEccCCCCCC-----CchhhcccCCCcEEeccCCcCCCcc----chHHhhccCCCcCCCccEEEcccccccccCC---
Q 047152 292 RYLDLSSNELRG-----IPKFLGNMCGLKILYLSGKELKGQL----SEFIQDLSSGCTKNSLEWLHLSSNEITGSMP--- 359 (776)
Q Consensus 292 ~~L~L~~n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~--- 359 (776)
+.|++++|.+++ ++..+..+++|++|++++|.+++.. +..+...+ +|++|++++|.+++...
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~------~L~~L~L~~n~i~~~~~~~l 213 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC------NLEVLDLNNNGLTDEGASAL 213 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC------CCCEEeccCCccChHHHHHH
Confidence 555555555442 2233444445555555555554321 11222222 55556665555543221
Q ss_pred --CccCCCCCCEEeccCccccccchhccc-----CCCCCcEEECCCcccccc----ccHHhhhCCCCCcEEECCCCccce
Q 047152 360 --NLGEFSSLKQLNLENNLLNGTIHKSIG-----QLFKLEMLKLNGNSLGGV----ISEALFSNLSRLAALDLADNSLTL 428 (776)
Q Consensus 360 --~l~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~L~~N~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~ 428 (776)
.+..+++|++|++++|.+++.....+. ..+.|++|++++|.++.. +.. .+..+++|+++++++|.++.
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE-VLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH-HHhcCCCccEEECCCCCCcH
Confidence 144567777777777777753333222 236788888888877521 112 34555778888888877763
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.5e-18 Score=153.09 Aligned_cols=155 Identities=30% Similarity=0.459 Sum_probs=92.6
Q ss_pred CCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEec
Q 047152 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSL 598 (776)
Q Consensus 519 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 598 (776)
.+++.|.+++|+++...| .+..+.+|+.|++++|+++ .+|..++.++.|+.|+++-|++. ..|..|+.++.|
T Consensus 33 s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l----- 104 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL----- 104 (264)
T ss_pred hhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh-----
Confidence 455666677777664443 3445667777777777776 66777777777777777777766 667777766666
Q ss_pred CCCcccccccccccccEEEccCCCCcc-CCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCc
Q 047152 599 YNRSQYEYKSTLGLVKILDLSSNKLGG-GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPS 677 (776)
Q Consensus 599 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 677 (776)
++|||++|++.. ..|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+. ..|.
T Consensus 105 ---------------evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk 167 (264)
T KOG0617|consen 105 ---------------EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK 167 (264)
T ss_pred ---------------hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH
Confidence 445555555432 34555555555555555555555 45555555555555555555554 4555
Q ss_pred cCcCCCCCCeeeCCCCcceec
Q 047152 678 SLSQLSGLSVMDLSYNNLSGK 698 (776)
Q Consensus 678 ~l~~l~~L~~L~ls~N~l~g~ 698 (776)
+++.+++|+.|.+.+|+++-.
T Consensus 168 eig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred HHHHHHHHHHHhcccceeeec
Confidence 555555555555555555533
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=8.9e-18 Score=148.19 Aligned_cols=166 Identities=26% Similarity=0.447 Sum_probs=97.8
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS 187 (776)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 187 (776)
+.++.+++.|.||+|.++ .+|..+..+.+|++|++++|+++ .+|.+++.+++|++|+++-|++. ..|..|+.++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--cCccccCCCch
Confidence 455667777777777777 36677777777777777777777 67777777777777777766654 34444555555
Q ss_pred CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152 188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV 267 (776)
Q Consensus 188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L 267 (776)
|+.|||.+|++... ..|..|..+ +.|+.|+++.|.+. .+|+.++++++ |
T Consensus 104 levldltynnl~e~-------------------------~lpgnff~m---~tlralyl~dndfe-~lp~dvg~lt~--l 152 (264)
T KOG0617|consen 104 LEVLDLTYNNLNEN-------------------------SLPGNFFYM---TTLRALYLGDNDFE-ILPPDVGKLTN--L 152 (264)
T ss_pred hhhhhccccccccc-------------------------cCCcchhHH---HHHHHHHhcCCCcc-cCChhhhhhcc--e
Confidence 55555554444331 233334444 44555555555543 34444555555 5
Q ss_pred CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcc
Q 047152 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGN 310 (776)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~ 310 (776)
+.|.+.+|.+. ..|..++.++.|++|++.+|+++-+|..+++
T Consensus 153 qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 153 QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred eEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 55555555544 3455555556666666666665555555444
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=3.8e-14 Score=161.67 Aligned_cols=152 Identities=33% Similarity=0.467 Sum_probs=122.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC----CccceeeCC--CC--CcEEEEECCCCCCCCCCCceec
Q 047152 33 KTRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCC----KWTGVGCSK--RT--GHVNKLDLQPIGFDSFPLRGKI 104 (776)
Q Consensus 33 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~l~g~~ 104 (776)
...+.++|..||+++|+++.++.. .+|. +..|| .|.||.|.. .. .+|+.|+|++ +.+.|.+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-----n~L~g~i 434 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-----QGLRGFI 434 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC-----CCccccC
Confidence 345677899999999999976542 4796 33442 799999952 22 2599999998 7889999
Q ss_pred cccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhcc
Q 047152 105 TPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSH 184 (776)
Q Consensus 105 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~ 184 (776)
|..++++++|++|+|++|.+.|. +|..++.+++|++|+|++|+++|.+|..++++++|++|+|++|++.+ ..|..++.
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g-~iP~~l~~ 512 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG-RVPAALGG 512 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc-cCChHHhh
Confidence 99999999999999999999986 99999999999999999999999999999999999999999999875 44555543
Q ss_pred C-CCCcEEEccCCC
Q 047152 185 L-SSLIYLYLDLND 197 (776)
Q Consensus 185 l-~~L~~L~Ls~n~ 197 (776)
. .++..+++.+|.
T Consensus 513 ~~~~~~~l~~~~N~ 526 (623)
T PLN03150 513 RLLHRASFNFTDNA 526 (623)
T ss_pred ccccCceEEecCCc
Confidence 2 345556655553
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=2.5e-14 Score=163.05 Aligned_cols=117 Identities=38% Similarity=0.672 Sum_probs=106.1
Q ss_pred ccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCC
Q 047152 613 VKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSY 692 (776)
Q Consensus 613 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 692 (776)
++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceecCCCC--CcccccccccccCCCCCCCCCCCCCCC
Q 047152 693 NNLSGKIPLG--TQLQSFNELVYAGNPELCGLPLRNKCP 729 (776)
Q Consensus 693 N~l~g~iP~~--~~~~~~~~~~~~gN~~lc~~~l~~~c~ 729 (776)
|+++|.+|.. ..+..+..+.+.+|+++|+.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999975 222344567899999999987656673
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=4.6e-13 Score=132.41 Aligned_cols=254 Identities=28% Similarity=0.304 Sum_probs=126.7
Q ss_pred ccccCCCCCCEEeCCCCCCCCC---CCCccccCCCCCCEEecCCCCCCC----CCCccC-------CCCCCCCEEeccCC
Q 047152 106 PALLKLQHLTYLDLSRNNFSGS---SIPEFLGSLGKLSYLGLSSAEFAG----PIPHQL-------GNLSRLQFLDLSFN 171 (776)
Q Consensus 106 ~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~l-------~~l~~L~~L~Ls~n 171 (776)
+.+..+..+++++||+|.|... .+...+.+.++|+..++|+- ++| .+|..+ -..++|++||||.|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 4456677778888888877532 12334566677777777753 333 344332 23445566666655
Q ss_pred CCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCC
Q 047152 172 NLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNL 251 (776)
Q Consensus 172 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l 251 (776)
.+.. . +++.+...+..++.|++|.|.+|.+...-...++. -|..|. .++.
T Consensus 103 A~G~-~----------------------g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~-----al~~l~--~~kk 152 (382)
T KOG1909|consen 103 AFGP-K----------------------GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR-----ALFELA--VNKK 152 (382)
T ss_pred ccCc-c----------------------chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH-----HHHHHH--HHhc
Confidence 5532 1 12223344555666666666666554332222221 011110 1111
Q ss_pred CCCchhhHhhcCCCCcCEEEccCCccccC----cchhhcCCCCCCEEEccCCCCCC-----CchhhcccCCCcEEeccCC
Q 047152 252 TNSVYPWLFNVSSSLVDRISLPSNQLQGS----IPEAFGRMVSLRYLDLSSNELRG-----IPKFLGNMCGLKILYLSGK 322 (776)
Q Consensus 252 ~~~~~~~l~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~-----ip~~l~~l~~L~~L~Ls~n 322 (776)
.+.. ++ |+++...+|++... +...|...+.|+.+.++.|.|.. +...+..+++|++|||.+|
T Consensus 153 ~~~~-------~~--Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 153 AASK-------PK--LRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred cCCC-------cc--eEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 1111 11 44444444444322 23345556667777777776654 2345666777777777777
Q ss_pred cCCCccchHHhhccCCCcCCCccEEEcccccccccCCC------ccCCCCCCEEeccCcccccc----chhcccCCCCCc
Q 047152 323 ELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN------LGEFSSLKQLNLENNLLNGT----IHKSIGQLFKLE 392 (776)
Q Consensus 323 ~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~------l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~ 392 (776)
.++......++..- +.+++|++|++++|.+...... -...++|++|.+.+|.++.. +...+...+.|+
T Consensus 224 tft~egs~~LakaL--~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 224 TFTLEGSVALAKAL--SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLE 301 (382)
T ss_pred hhhhHHHHHHHHHh--cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence 76654433333211 1223566666666655532221 12345666666666665531 122233455666
Q ss_pred EEECCCccc
Q 047152 393 MLKLNGNSL 401 (776)
Q Consensus 393 ~L~L~~N~l 401 (776)
.|+|++|++
T Consensus 302 kLnLngN~l 310 (382)
T KOG1909|consen 302 KLNLNGNRL 310 (382)
T ss_pred HhcCCcccc
Confidence 666666665
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.2e-12 Score=129.85 Aligned_cols=217 Identities=25% Similarity=0.271 Sum_probs=134.0
Q ss_pred CCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCC
Q 047152 158 GNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNS 237 (776)
Q Consensus 158 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 237 (776)
+++++|+...|.++.+...+.-.....|++++.|||+.|-+.....+......+++|+.|+|+.|++.......... .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~--~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL--L 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh--h
Confidence 46778888888777764322224667788888888888888887777777888899999999988876544332222 1
Q ss_pred CCCccEEEcCCCCCCCCchh-hHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc--hhhcccCCC
Q 047152 238 SNSLEVIDLTENNLTNSVYP-WLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP--KFLGNMCGL 314 (776)
Q Consensus 238 ~~~L~~L~Ls~n~l~~~~~~-~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip--~~l~~l~~L 314 (776)
+++|+.|.++.|.++..... .+...++ ++.|++..|............+..|+.|||++|++-..+ ...+.++.|
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPs--l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPS--LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCc--HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 27888888888888743222 2345566 888888888644444445556777888888888887755 456777778
Q ss_pred cEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccc--cCCCccCCCCCCEEeccCcccc
Q 047152 315 KILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITG--SMPNLGEFSSLKQLNLENNLLN 378 (776)
Q Consensus 315 ~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~--~~~~l~~l~~L~~L~Ls~n~l~ 378 (776)
..|+++.+.+...--...........+++|+.|++..|++.. ....+..+++|+.|.+..|.++
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 888877777654211111000000112255555555555531 1111334444444444444443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=7e-13 Score=138.58 Aligned_cols=167 Identities=31% Similarity=0.443 Sum_probs=125.3
Q ss_pred eEeccCCcccccCCCC---CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCc
Q 047152 502 GIDISSNHFEGPIPPL---PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNN 578 (776)
Q Consensus 502 ~l~l~~n~l~g~~p~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 578 (776)
..|++.|++.. +|.. +..|+.+.+..|.+. .+|.....+..|.++||+.|+++ .+|..++.++ |+.|-+++|+
T Consensus 79 ~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 34555555542 2222 445666777777776 45556666788888888888887 7777777775 8888888888
Q ss_pred ccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCc
Q 047152 579 FFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQL 658 (776)
Q Consensus 579 l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 658 (776)
++ .+|..++.+..| ..||.+.|.+. .+|..++++.+|+.|++..|++. ..|+++..|
T Consensus 155 l~-~lp~~ig~~~tl--------------------~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L 211 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTL--------------------AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL 211 (722)
T ss_pred cc-cCCcccccchhH--------------------HHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC
Confidence 87 677777755555 66788888887 67888888888888888888888 577777755
Q ss_pred CCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCccee
Q 047152 659 KSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG 697 (776)
Q Consensus 659 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 697 (776)
.|..||+|+|+++ .||-.|.+|..|++|-|.+|+|+-
T Consensus 212 -pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 212 -PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred -ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 4788888888888 788888888888888888888874
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=5.9e-11 Score=129.76 Aligned_cols=177 Identities=34% Similarity=0.453 Sum_probs=127.6
Q ss_pred CCCcEEEccCCccccCCCccccCCC-CccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEe
Q 047152 519 SNATSLNLSKNKFSGSISFLCSLSN-RLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS 597 (776)
Q Consensus 519 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (776)
..++.|++.+|.++...+. ..... +|+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+.++.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 3566666666666654443 22232 6777777777776 55556667777777777777776 4555455666777777
Q ss_pred cCCCccccccc---ccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeec
Q 047152 598 LYNRSQYEYKS---TLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGG 674 (776)
Q Consensus 598 l~~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 674 (776)
++++.+..... ....|+++++++|++. .++..+..+..+..+.+++|++. .++..++.+++++.|++++|+++.
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~- 269 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS- 269 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-
Confidence 77766666655 3344788999999654 57778889999999999999987 457888899999999999999984
Q ss_pred CCccCcCCCCCCeeeCCCCcceecCCCC
Q 047152 675 IPSSLSQLSGLSVMDLSYNNLSGKIPLG 702 (776)
Q Consensus 675 ~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 702 (776)
++. +..+..++.|++++|.++...|..
T Consensus 270 i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 270 ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccc-ccccCccCEEeccCccccccchhh
Confidence 444 888899999999999998776654
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=2.4e-12 Score=134.64 Aligned_cols=123 Identities=27% Similarity=0.358 Sum_probs=83.4
Q ss_pred cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccE
Q 047152 267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW 346 (776)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~ 346 (776)
|+.|-+++|+++ .+|+.++....|..||.+.|.+..+|..++.+.+|+.|.+..|++....+ .+..++ |..
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~-El~~Lp-------Li~ 215 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE-ELCSLP-------LIR 215 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH-HHhCCc-------eee
Confidence 666777777766 46667777778888888888888888888888888888888887765443 344554 777
Q ss_pred EEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCC---CCcEEECCCc
Q 047152 347 LHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLF---KLEMLKLNGN 399 (776)
Q Consensus 347 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~---~L~~L~L~~N 399 (776)
||++.|+++..+-.|.+++.|++|-|.+|.+. ..|..++... --++|+..-+
T Consensus 216 lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 216 LDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecccCceeecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 77777777754444777777777777777776 4454443222 2344555544
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.1e-11 Score=126.17 Aligned_cols=211 Identities=25% Similarity=0.231 Sum_probs=117.4
Q ss_pred cCCCCCCEEecCCCCCCCCCC--ccCCCCCCCCEEeccCCCCCCCCC-chhhccCCCCcEEEccCCCCCCcchhhHhhcC
Q 047152 134 GSLGKLSYLGLSSAEFAGPIP--HQLGNLSRLQFLDLSFNNLFSGEN-LDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSK 210 (776)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 210 (776)
.++++|+...|.++.+. ..+ .-...+++++.||||+|-+..... ......+++|+.|+++.|++..... ...-..
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLL 195 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhh
Confidence 34556666666666554 222 233456666666666665543111 1234556666666666666654211 011124
Q ss_pred CCCCCEEEccCCCCCCCCc-hhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCc-chhhcCC
Q 047152 211 LHSLTTLSLYSCDLPPIIP-SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSI-PEAFGRM 288 (776)
Q Consensus 211 l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l 288 (776)
++.|+.|.|++|.++...- ..+..+ ++|+.|+|.+|............++. |+.|+|++|++.... -...+.+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~f---Psl~~L~L~~N~~~~~~~~~~~i~~~--L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTF---PSLEVLYLEANEIILIKATSTKILQT--LQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhC---CcHHHhhhhcccccceecchhhhhhH--HhhccccCCcccccccccccccc
Confidence 5666777777776663222 112223 67777777777422222222223333 777777777765321 1346778
Q ss_pred CCCCEEEccCCCCCC--Cchh-----hcccCCCcEEeccCCcCCCcc-chHHhhccCCCcCCCccEEEccccccccc
Q 047152 289 VSLRYLDLSSNELRG--IPKF-----LGNMCGLKILYLSGKELKGQL-SEFIQDLSSGCTKNSLEWLHLSSNEITGS 357 (776)
Q Consensus 289 ~~L~~L~L~~n~l~~--ip~~-----l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~~~~~~~L~~L~L~~n~l~~~ 357 (776)
+.|+.|.++.+.+.. +|+. ...+++|++|++..|++.... ...+..+. +|+.|....|.+...
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~------nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLE------NLKHLRITLNYLNKE 341 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccc------hhhhhhccccccccc
Confidence 888888888888877 4443 456778888888888875321 11222333 677777777777643
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=1.1e-10 Score=127.48 Aligned_cols=198 Identities=33% Similarity=0.468 Sum_probs=107.8
Q ss_pred EEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCC-CCCEEeccCCCCCCCCCchhhccCCCCcEEEcc
Q 047152 116 YLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLS-RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD 194 (776)
Q Consensus 116 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls 194 (776)
.++++.+.+.. -+..+..++.++.|++.+|.++ .+|.....+. +|++|++++|++. ..+..++.+++|+.|+++
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh--hhhhhhhccccccccccC
Confidence 46666666532 2334445566777777777776 5565565563 7777777777664 222456666777777777
Q ss_pred CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152 195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS 274 (776)
Q Consensus 195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~ 274 (776)
+|++..+ +...+..+.|+.|++++|++....+. .... ..|+++.+++|... ..+..+.++.. +..+.+.+
T Consensus 172 ~N~l~~l---~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~---~~L~~l~~~~N~~~-~~~~~~~~~~~--l~~l~l~~ 241 (394)
T COG4886 172 FNDLSDL---PKLLSNLSNLNNLDLSGNKISDLPPE-IELL---SALEELDLSNNSII-ELLSSLSNLKN--LSGLELSN 241 (394)
T ss_pred Cchhhhh---hhhhhhhhhhhheeccCCccccCchh-hhhh---hhhhhhhhcCCcce-ecchhhhhccc--ccccccCC
Confidence 7766663 33333566666666666666543322 1122 34566666666422 22333444444 44444555
Q ss_pred CccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccch
Q 047152 275 NQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSE 330 (776)
Q Consensus 275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~ 330 (776)
|++.. ++..++.++++++|++++|.++.++. ++.+.+++.|++++|.+....+.
T Consensus 242 n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 242 NKLED-LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ceeee-ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 54442 13445555555555555555555544 55555555555555555544443
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=1.8e-10 Score=114.27 Aligned_cols=201 Identities=23% Similarity=0.212 Sum_probs=106.1
Q ss_pred hhcCCCCCCEEEccCCCCCCCCchhhhc-CCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhh
Q 047152 207 LLSKLHSLTTLSLYSCDLPPIIPSSLLN-LNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285 (776)
Q Consensus 207 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l 285 (776)
.+..+++|++|+||.|-+....+..+.. ++++..|++|.|.+|.+...--..++.. |..|. .....
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a----l~~l~---------~~kk~ 153 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA----LFELA---------VNKKA 153 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH----HHHHH---------HHhcc
Confidence 3445566667777766665544443332 2223556666666655542221122110 11111 11123
Q ss_pred cCCCCCCEEEccCCCCCCC-----chhhcccCCCcEEeccCCcCCCcc----chHHhhccCCCcCCCccEEEcccccccc
Q 047152 286 GRMVSLRYLDLSSNELRGI-----PKFLGNMCGLKILYLSGKELKGQL----SEFIQDLSSGCTKNSLEWLHLSSNEITG 356 (776)
Q Consensus 286 ~~l~~L~~L~L~~n~l~~i-----p~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~~~~~~~L~~L~L~~n~l~~ 356 (776)
+.-++|+++...+|++..- ...+...+.|+.+.++.|.|...- ...+...+ +|+.|||.+|-++.
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~------~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP------HLEVLDLRDNTFTL 227 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC------cceeeecccchhhh
Confidence 4557788888888888763 345666778888888887765322 22333333 67777777776653
Q ss_pred cCCC-----ccCCCCCCEEeccCccccccchhcc-----cCCCCCcEEECCCcccccccc---HHhhhCCCCCcEEECCC
Q 047152 357 SMPN-----LGEFSSLKQLNLENNLLNGTIHKSI-----GQLFKLEMLKLNGNSLGGVIS---EALFSNLSRLAALDLAD 423 (776)
Q Consensus 357 ~~~~-----l~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~Ls~ 423 (776)
.... +..+++|++|++++|.+...-...+ ...++|++|.+.+|.++..-. .......+.|..|++++
T Consensus 228 egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 228 EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 2221 4555666666666666654322222 224566666666666542211 11233455666666666
Q ss_pred Ccc
Q 047152 424 NSL 426 (776)
Q Consensus 424 n~l 426 (776)
|++
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 665
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=3.7e-10 Score=105.48 Aligned_cols=111 Identities=35% Similarity=0.393 Sum_probs=35.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccc-CCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhh-ccC
Q 047152 108 LLKLQHLTYLDLSRNNFSGSSIPEFLG-SLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWL-SHL 185 (776)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l 185 (776)
+.+...+++|+|++|.|+.+ +.++ .+.+|++|||++|.++. ++ .+..+++|++|++++|++.. ..+.+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~--i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS--ISEGLDKNL 87 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S---CHHHHHH-
T ss_pred cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc--cccchHHhC
Confidence 34445677777777777632 2344 46777777777777773 32 46667777777777777753 22233 357
Q ss_pred CCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCC
Q 047152 186 SSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP 226 (776)
Q Consensus 186 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 226 (776)
++|++|++++|++..... ...++.+++|++|++.+|.+..
T Consensus 88 p~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccc
Confidence 777777777777766543 2455667777777777776543
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=5.7e-10 Score=104.25 Aligned_cols=127 Identities=32% Similarity=0.331 Sum_probs=59.3
Q ss_pred cEEEEECCCCCCCCCCCceecccccc-CCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccC-CCCC
Q 047152 84 HVNKLDLQPIGFDSFPLRGKITPALL-KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQL-GNLS 161 (776)
Q Consensus 84 ~v~~L~L~~~~~~~~~l~g~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~ 161 (776)
+.+.|+|++ +.+.- + +.++ .+.+|+.|||++|.++. ++ .+..+++|++|++++|+++ .++..+ ..++
T Consensus 20 ~~~~L~L~~-----n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 20 KLRELNLRG-----NQIST-I-ENLGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccc-----ccccc-c-cchhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 568899998 44432 2 2455 57899999999999985 43 5788999999999999999 454444 4689
Q ss_pred CCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcch-hhHhhcCCCCCCEEEccC
Q 047152 162 RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSN-WVQLLSKLHSLTTLSLYS 221 (776)
Q Consensus 162 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~L~~ 221 (776)
+|++|++++|++........++.+++|++|++.+|.+...+. -...+..+|+|+.||-..
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 999999999999887788899999999999999999876543 234567888888886543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=1.7e-10 Score=111.51 Aligned_cols=132 Identities=25% Similarity=0.296 Sum_probs=79.7
Q ss_pred CCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCC
Q 047152 287 RMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSS 366 (776)
Q Consensus 287 ~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~ 366 (776)
..+.|+++||++|.|+.+.++..-.+.++.|++++|.+..... +..++ +|+.|||++|.++.....-..+.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~------~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELP------QLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcc------cceEeecccchhHhhhhhHhhhcC
Confidence 3455677777777777766666666777777777776654322 44444 667777777766644333344556
Q ss_pred CCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce
Q 047152 367 LKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL 428 (776)
Q Consensus 367 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 428 (776)
++.|.++.|.+... ..+.++-+|..||+++|++...-.-..++++|.|+.+.+.+|.+.+
T Consensus 354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 66666766666432 3455556666677777766533322345666666666666666653
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=1.7e-10 Score=126.16 Aligned_cols=198 Identities=33% Similarity=0.339 Sum_probs=117.1
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCC
Q 047152 109 LKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSL 188 (776)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L 188 (776)
..+..++.++++.|.+.. +-..+..+++|++|++.+|++.. +...+..+++|++|++++|.|. ....+..++.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~---~i~~l~~l~~L 142 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT---KLEGLSTLTLL 142 (414)
T ss_pred HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc---cccchhhccch
Confidence 345666777777777763 33456777888888888888873 3333667888888888888873 44556666668
Q ss_pred cEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcC
Q 047152 189 IYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD 268 (776)
Q Consensus 189 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~ 268 (776)
+.|++++|.++.+. .+..++.|+.+++++|++....+.....+ .+++.+++.+|.+.... .+..... +.
T Consensus 143 ~~L~l~~N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~~~~~~~---~~l~~l~l~~n~i~~i~--~~~~~~~--l~ 211 (414)
T KOG0531|consen 143 KELNLSGNLISDIS----GLESLKSLKLLDLSYNRIVDIENDELSEL---ISLEELDLGGNSIREIE--GLDLLKK--LV 211 (414)
T ss_pred hhheeccCcchhcc----CCccchhhhcccCCcchhhhhhhhhhhhc---cchHHHhccCCchhccc--chHHHHH--HH
Confidence 88888888877753 34447777777777777766544102333 66677777777664321 1222222 33
Q ss_pred EEEccCCccccCcchhhcCCC--CCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCC
Q 047152 269 RISLPSNQLQGSIPEAFGRMV--SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELK 325 (776)
Q Consensus 269 ~L~L~~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~ 325 (776)
.+++..|.++..-+ +..+. +|+.+++++|.+..++..+..+..+..+++..|.+.
T Consensus 212 ~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 212 LLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HhhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 33555555543211 11122 256666666666655444445555555555555443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=9.6e-10 Score=106.42 Aligned_cols=207 Identities=22% Similarity=0.263 Sum_probs=119.3
Q ss_pred ccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhc
Q 047152 104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLS 183 (776)
Q Consensus 104 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~ 183 (776)
+|-.+.-+++|..+.+|.+.-.. +-+....-+.|+++...+..+.. .|. +--...+....-+.-....+.....+.
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~d 281 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQD-VPS-LLPETILADPSGSEPSTSNGSALVSAD 281 (490)
T ss_pred cccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeecccccc-ccc-ccchhhhcCccCCCCCccCCceEEecc
Confidence 34455566677777777664321 11111223456666665544432 111 111111111111111111111122344
Q ss_pred cCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcC
Q 047152 184 HLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVS 263 (776)
Q Consensus 184 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~ 263 (776)
..+.|+++|||+|.++.+ -+++.-.|.++.|+++.|.+..... ++.+ ++|+.|||++|.++. +..|-..+-
T Consensus 282 TWq~LtelDLS~N~I~~i---DESvKL~Pkir~L~lS~N~i~~v~n--La~L---~~L~~LDLS~N~Ls~-~~Gwh~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQI---DESVKLAPKLRRLILSQNRIRTVQN--LAEL---PQLQLLDLSGNLLAE-CVGWHLKLG 352 (490)
T ss_pred hHhhhhhccccccchhhh---hhhhhhccceeEEeccccceeeehh--hhhc---ccceEeecccchhHh-hhhhHhhhc
Confidence 557788888888888764 3566777888888888888765322 4444 888888888887763 333444555
Q ss_pred CCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc--hhhcccCCCcEEeccCCcCCCc
Q 047152 264 SSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP--KFLGNMCGLKILYLSGKELKGQ 327 (776)
Q Consensus 264 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip--~~l~~l~~L~~L~Ls~n~l~~~ 327 (776)
+ ++.|.|+.|.+... ..++++-+|..||+++|+|..+. ..+++++.|+++.|.+|.+.+.
T Consensus 353 N--IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 353 N--IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred C--EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 5 77788887776532 34666777788888888777732 4567777777777777776654
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=2.8e-09 Score=124.36 Aligned_cols=294 Identities=24% Similarity=0.266 Sum_probs=151.2
Q ss_pred CCCEEeCCCCC--CCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcE
Q 047152 113 HLTYLDLSRNN--FSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIY 190 (776)
Q Consensus 113 ~L~~L~Ls~n~--l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 190 (776)
.|++|-+.+|. +... .+.+|..++.|++|||++|.=-+.+|.++++|-+|++|++++..+. ..|..+++++.|.+
T Consensus 546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhhe
Confidence 56666666664 3322 3345666777777777776655677777777777777777777765 56667777777777
Q ss_pred EEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCC--CCcC
Q 047152 191 LYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSS--SLVD 268 (776)
Q Consensus 191 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~--~~L~ 268 (776)
|++..+..... ++.....+++|++|.+...... .....+..+..+++|+.+....... .+-..+..+.. ...+
T Consensus 623 Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 623 LNLEVTGRLES--IPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred ecccccccccc--ccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhH
Confidence 77776654332 2344555777777777554311 1112222222225555555533322 11111111111 0012
Q ss_pred EEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc-hhhcc------cCCCcEEeccCCcCCCccchHHhhccCCCcC
Q 047152 269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP-KFLGN------MCGLKILYLSGKELKGQLSEFIQDLSSGCTK 341 (776)
Q Consensus 269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip-~~l~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~ 341 (776)
.+.+..+... ..+..+..+.+|+.|.+.++.+.++. ..... ++++..+...++..- ..+.+..-.
T Consensus 698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~------ 769 (889)
T KOG4658|consen 698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFA------ 769 (889)
T ss_pred hhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhcc------
Confidence 2222222222 34456778888888888888876522 11111 112222222222111 111111122
Q ss_pred CCccEEEcccccccccCCC-ccCCCCCCEEeccCcccccc-chhcccCCCCCcEEECCCcccccc----ccHHhhhCCCC
Q 047152 342 NSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGT-IHKSIGQLFKLEMLKLNGNSLGGV----ISEALFSNLSR 415 (776)
Q Consensus 342 ~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~----~~~~~~~~l~~ 415 (776)
++|+.|.+..+.....+.. ...+..++.+.+..+.+.+. .-...+.++++..+.+..=.+... .|. ...+|.
T Consensus 770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~--l~~~P~ 847 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPK--LGKLPL 847 (889)
T ss_pred CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcc--cccCcc
Confidence 2888888888776654443 55566666666666666655 344455555555555544332211 121 344566
Q ss_pred CcEEECCCC
Q 047152 416 LAALDLADN 424 (776)
Q Consensus 416 L~~L~Ls~n 424 (776)
+..+.+.++
T Consensus 848 ~~~~~i~~~ 856 (889)
T KOG4658|consen 848 LSTLTIVGC 856 (889)
T ss_pred ccccceecc
Confidence 666666554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=4.1e-09 Score=80.83 Aligned_cols=60 Identities=40% Similarity=0.505 Sum_probs=36.9
Q ss_pred cCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcc
Q 047152 636 GLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNL 695 (776)
Q Consensus 636 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 695 (776)
+|++|++++|+++...+..|..+++|++|++++|++....|..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666644445556666666666666666655556666666666666666654
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=5.7e-09 Score=121.89 Aligned_cols=205 Identities=23% Similarity=0.214 Sum_probs=130.8
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCC--CCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCC
Q 047152 109 LKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAE--FAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLS 186 (776)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 186 (776)
......|...+-+|.+.. ++.... .++|++|-+..|. +....+..|..++.|++|||++|.-.. ..|..++.+-
T Consensus 520 ~~~~~~rr~s~~~~~~~~--~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li 595 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH--IAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELV 595 (889)
T ss_pred cchhheeEEEEeccchhh--ccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhh
Confidence 344667778888887752 444333 4579999998886 443334457789999999999876433 7788899999
Q ss_pred CCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCC--CCCCchhhHhhcCC
Q 047152 187 SLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENN--LTNSVYPWLFNVSS 264 (776)
Q Consensus 187 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~--l~~~~~~~l~~~~~ 264 (776)
+||+|++++..+.. +|..++++++|.+|++..+.....+|.....+ ++|++|.+.... .....-..+.++.+
T Consensus 596 ~LryL~L~~t~I~~---LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L---~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 596 HLRYLDLSDTGISH---LPSGLGNLKKLIYLNLEVTGRLESIPGILLEL---QSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred hhhcccccCCCccc---cchHHHHHHhhheeccccccccccccchhhhc---ccccEEEeeccccccchhhHHhhhcccc
Confidence 99999999988876 67889999999999998887665566666666 888888886553 22223333444444
Q ss_pred CCcCEEEccCCccccCcchhhcCCCCCC----EEEccCCCCCCCchhhcccCCCcEEeccCCcCCCc
Q 047152 265 SLVDRISLPSNQLQGSIPEAFGRMVSLR----YLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQ 327 (776)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~ 327 (776)
|+.+....... .+-..+..++.|. .+.+..+.....+..+..+.+|+.|.+.++.+...
T Consensus 670 --L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 670 --LENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred --hhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence 44444432222 1111122233322 23323333333555667777777777777776543
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=5.9e-09 Score=79.94 Aligned_cols=61 Identities=39% Similarity=0.488 Sum_probs=56.1
Q ss_pred ccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCcee
Q 047152 611 GLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQF 671 (776)
Q Consensus 611 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 671 (776)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678999999999977778999999999999999999987788999999999999999986
No 42
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.71 E-value=1.8e-08 Score=70.54 Aligned_cols=41 Identities=51% Similarity=1.029 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCCCccceeeC
Q 047152 38 DEEREALLTFKASLV-DESGILSSWRREDEKRDCCKWTGVGCS 79 (776)
Q Consensus 38 ~~~~~~ll~~k~~~~-~~~~~~~~W~~~~~~~~~c~w~gv~c~ 79 (776)
++|++||++||+++. +|.+.+.+|+... ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 679999999999998 5778999998411 2799999999995
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=2e-09 Score=117.80 Aligned_cols=125 Identities=33% Similarity=0.342 Sum_probs=75.4
Q ss_pred CCCCEEeCCCCCCCCCCCCccc-cCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchh-hccCCCCc
Q 047152 112 QHLTYLDLSRNNFSGSSIPEFL-GSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDW-LSHLSSLI 189 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~-l~~l~~L~ 189 (776)
+.++.++...+.+... ..+ ..+..++.+++..|.+. .+-..+..+++|+.|++.+|++. .+.. +..+++|+
T Consensus 49 ~~~~~~~~~~~~~~~~---~~~~~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~---~i~~~l~~~~~L~ 121 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSD---EDLVESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE---KIENLLSSLVNLQ 121 (414)
T ss_pred chhhhhcchhccccch---hhhHHHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh---hcccchhhhhcch
Confidence 3445555555544321 122 45677777888888877 33445777888888888888874 3333 67788888
Q ss_pred EEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCC
Q 047152 190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLT 252 (776)
Q Consensus 190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~ 252 (776)
+|++++|.|+.+. .+..++.|+.|++++|.+....- +..+ ..|+.+++++|.+.
T Consensus 122 ~L~ls~N~I~~i~----~l~~l~~L~~L~l~~N~i~~~~~--~~~l---~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 122 VLDLSFNKITKLE----GLSTLTLLKELNLSGNLISDISG--LESL---KSLKLLDLSYNRIV 175 (414)
T ss_pred heecccccccccc----chhhccchhhheeccCcchhccC--Cccc---hhhhcccCCcchhh
Confidence 8888888887753 34455556666776666544211 1112 44555555555444
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.7e-08 Score=97.92 Aligned_cols=93 Identities=28% Similarity=0.291 Sum_probs=65.9
Q ss_pred CCCCCCCCEEeccCCCCCCCCCchhh-ccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcC
Q 047152 157 LGNLSRLQFLDLSFNNLFSGENLDWL-SHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNL 235 (776)
Q Consensus 157 l~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 235 (776)
+..+..++.|-+.++.|...+....| ...+.++.+||.+|.++....+...+.++|.|++|+++.|++...+...-..+
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 33344555666666666544444444 34678999999999999988888888999999999999999876543221223
Q ss_pred CCCCCccEEEcCCCCCC
Q 047152 236 NSSNSLEVIDLTENNLT 252 (776)
Q Consensus 236 ~~~~~L~~L~Ls~n~l~ 252 (776)
.+|++|-|.+..+.
T Consensus 121 ---~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 121 ---KNLRVLVLNGTGLS 134 (418)
T ss_pred ---cceEEEEEcCCCCC
Confidence 77888888877665
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=8.5e-09 Score=111.29 Aligned_cols=107 Identities=33% Similarity=0.368 Sum_probs=77.0
Q ss_pred ccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcc-cccCcCCCCeeeCcCceeeecCCccCcCCCCCCe
Q 047152 609 TLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITP-KIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSV 687 (776)
Q Consensus 609 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 687 (776)
-++.++.|||++|+++.. +.+..|+.|+.|||++|.++ .+|. ....+. |+.|.+++|.++.. ..+.+|.+|+.
T Consensus 185 ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYG 258 (1096)
T ss_pred HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhc
Confidence 456778889999998843 37888888999999999888 3442 223333 88899999988743 35778888899
Q ss_pred eeCCCCcceecCCC--CCcccccccccccCCCCCCC
Q 047152 688 MDLSYNNLSGKIPL--GTQLQSFNELVYAGNPELCG 721 (776)
Q Consensus 688 L~ls~N~l~g~iP~--~~~~~~~~~~~~~gN~~lc~ 721 (776)
||+++|-+++---- -..+..+..+.++|||.-|.
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 99999988753111 13445666778899988775
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.39 E-value=1.7e-08 Score=86.80 Aligned_cols=133 Identities=28% Similarity=0.351 Sum_probs=69.4
Q ss_pred ccEEECcCCcccccCChhhh---CCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCC
Q 047152 545 LIYLDLSNNLLSGKLPDCWF---QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSN 621 (776)
Q Consensus 545 L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N 621 (776)
+..+||+++++- .+++... ....|...+|++|.+. ..|..|.. .++.++.|+|++|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~-------------------kf~t~t~lNl~~n 87 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTI-------------------KFPTATTLNLANN 87 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhh-------------------ccchhhhhhcchh
Confidence 445666666653 3444332 3334445566666655 23322221 1223355666666
Q ss_pred CCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152 622 KLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 622 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
.|+ .+|.++..++.|+.||++.|.+. ..|.-+..+.++-.||..+|.+. ++|..+-.-+.....++.++++.+..|.
T Consensus 88 eis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 88 EIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred hhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 666 56666666666666666666666 45555555666666666666655 4443322223333344555555555553
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.6e-08 Score=96.76 Aligned_cols=177 Identities=21% Similarity=0.222 Sum_probs=115.8
Q ss_pred CCccEEEcCCCCCCCCc-hhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCC-CCCC--CchhhcccCCC
Q 047152 239 NSLEVIDLTENNLTNSV-YPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSN-ELRG--IPKFLGNMCGL 314 (776)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~-~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~--ip~~l~~l~~L 314 (776)
+.|+++||+...++..- -..+..+++ |+.|.+.++++...+...+++-.+|+.|+++.+ .++. ..-.+.+++.|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~k--Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSK--LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHh--hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 45788888877776422 223455666 888888888888888888888888999998876 4554 33456788889
Q ss_pred cEEeccCCcCCCccchHH-hhccCCCcCCCccEEEcccccccccCCC----ccCCCCCCEEeccCcc-ccccchhcccCC
Q 047152 315 KILYLSGKELKGQLSEFI-QDLSSGCTKNSLEWLHLSSNEITGSMPN----LGEFSSLKQLNLENNL-LNGTIHKSIGQL 388 (776)
Q Consensus 315 ~~L~Ls~n~l~~~~~~~~-~~l~~~~~~~~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l 388 (776)
..|+++.|.+.......+ .... ++|+.|+|+++.-.-.... ...+++|..|||++|. ++...-..|.++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~his-----e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf 337 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHIS-----ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF 337 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhc-----hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence 999999888765443222 2222 2788888887653211111 4567888888888764 343344456677
Q ss_pred CCCcEEECCCccccccccHH--hhhCCCCCcEEECCCC
Q 047152 389 FKLEMLKLNGNSLGGVISEA--LFSNLSRLAALDLADN 424 (776)
Q Consensus 389 ~~L~~L~L~~N~l~~~~~~~--~~~~l~~L~~L~Ls~n 424 (776)
+.|++|.++.|. +.+|.. .+...|.|.+||+.++
T Consensus 338 ~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 338 NYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred chheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 788888887776 344442 2344566666666543
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.2e-08 Score=96.18 Aligned_cols=61 Identities=25% Similarity=0.165 Sum_probs=36.6
Q ss_pred hcccCCCcEEeccCCc-CCCccchHHhhccCCCcCCCccEEEcccccccccCCC----ccCCCCCCEEeccCcc
Q 047152 308 LGNMCGLKILYLSGKE-LKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN----LGEFSSLKQLNLENNL 376 (776)
Q Consensus 308 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~Ls~n~ 376 (776)
...+++|.+|||++|. ++......|..++ .|++|.++.|.. .+|. +...|+|.+||+.++-
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~------~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFN------YLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcc------hheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 3456666666666553 3332333344444 677777777764 3443 6778888888887653
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=1.2e-08 Score=110.15 Aligned_cols=126 Identities=28% Similarity=0.308 Sum_probs=71.1
Q ss_pred cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccE
Q 047152 267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW 346 (776)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~ 346 (776)
|...+.+.|.+. .+..++.-++.|+.|+|++|+++... .+..++.|++|||+.|.+....--..... .|+.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-------~L~~ 236 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-------KLQL 236 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-------hhee
Confidence 555556666655 34455666666667777777666653 56666666677776666654322211111 4666
Q ss_pred EEcccccccccCCCccCCCCCCEEeccCccccccc-hhcccCCCCCcEEECCCcccc
Q 047152 347 LHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTI-HKSIGQLFKLEMLKLNGNSLG 402 (776)
Q Consensus 347 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~ 402 (776)
|.+++|.++ ..-.+.++.+|+.||+++|-+.+.- -.-+..+..|+.|.|.+|.+.
T Consensus 237 L~lrnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666666665 3334566666666666666655421 111334455666666666653
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=3.9e-07 Score=87.60 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=41.4
Q ss_pred cCEEEccCCccccCcc----hhhcCCCCCCEEEccCCCCCC--Cc----hhhcccCCCcEEeccCCcCCCccchHHhhcc
Q 047152 267 VDRISLPSNQLQGSIP----EAFGRMVSLRYLDLSSNELRG--IP----KFLGNMCGLKILYLSGKELKGQLSEFIQDLS 336 (776)
Q Consensus 267 L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~--ip----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 336 (776)
|+......|++..-.. ..+..-.+|+.+.+..|.|.. +. ..+..+.+|++|++.+|.++-.....++..-
T Consensus 159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 5555555555432111 112223456666666665543 11 1234455666666666666544444433322
Q ss_pred CCCcCCCccEEEccccccc
Q 047152 337 SGCTKNSLEWLHLSSNEIT 355 (776)
Q Consensus 337 ~~~~~~~L~~L~L~~n~l~ 355 (776)
|.++.|++|.+.+|-++
T Consensus 239 --~~W~~lrEL~lnDClls 255 (388)
T COG5238 239 --CEWNLLRELRLNDCLLS 255 (388)
T ss_pred --cccchhhhccccchhhc
Confidence 23334566666655554
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.31 E-value=3.9e-07 Score=87.60 Aligned_cols=228 Identities=24% Similarity=0.175 Sum_probs=121.4
Q ss_pred cccCCCCCCEEeCCCCCCCCC---CCCccccCCCCCCEEecCCCCCCC----CCCc-------cCCCCCCCCEEeccCCC
Q 047152 107 ALLKLQHLTYLDLSRNNFSGS---SIPEFLGSLGKLSYLGLSSAEFAG----PIPH-------QLGNLSRLQFLDLSFNN 172 (776)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~-------~l~~l~~L~~L~Ls~n~ 172 (776)
.+..+..++.+|||+|.|... .+...+.+-++|+..++++- ++| .+|+ .+-.+++|+..+||.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 345578888899999988642 12334556677888887763 222 2222 23456666777777666
Q ss_pred CCCCCCch----hhccCCCCcEEEccCCCCCCcch--hhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEc
Q 047152 173 LFSGENLD----WLSHLSSLIYLYLDLNDLSNFSN--WVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDL 246 (776)
Q Consensus 173 ~~~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~L 246 (776)
+.. ..++ .+++-+.|++|.+++|.+..+.. +...+..+ .........+.|++...
T Consensus 104 fg~-~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l------------------a~nKKaa~kp~Le~vic 164 (388)
T COG5238 104 FGS-EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL------------------AYNKKAADKPKLEVVIC 164 (388)
T ss_pred cCc-ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH------------------HHHhhhccCCCceEEEe
Confidence 643 2221 23444555555555554433210 11000000 00001112255666666
Q ss_pred CCCCCCC-Cchhh---HhhcCCCCcCEEEccCCccccC-----cchhhcCCCCCCEEEccCCCCCC-----CchhhcccC
Q 047152 247 TENNLTN-SVYPW---LFNVSSSLVDRISLPSNQLQGS-----IPEAFGRMVSLRYLDLSSNELRG-----IPKFLGNMC 312 (776)
Q Consensus 247 s~n~l~~-~~~~~---l~~~~~~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~-----ip~~l~~l~ 312 (776)
..|++.. +..-+ +..... ++.+.+..|.+.-. +-..+..+.+|+.||+.+|.++- +...+...+
T Consensus 165 grNRlengs~~~~a~~l~sh~~--lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 165 GRNRLENGSKELSAALLESHEN--LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcC--ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 6665532 11111 111223 66666666665422 11224567888999999988775 334556677
Q ss_pred CCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccc
Q 047152 313 GLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITG 356 (776)
Q Consensus 313 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~ 356 (776)
.|+.|.+.+|.++..-...+-...+-...++|..|...+|...+
T Consensus 243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 78999999998886655443332222223366777777666553
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=7.1e-08 Score=83.01 Aligned_cols=127 Identities=22% Similarity=0.329 Sum_probs=95.8
Q ss_pred CCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhc-cccCCEEECcCCc
Q 047152 568 SLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMD-LVGLVALNLSRNN 646 (776)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~ 646 (776)
.+..++|+++++- .+++....+....+ |+..+|++|.+. ..|+.|.. .+.++.|||++|.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~e-----------------l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~ne 88 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYE-----------------LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNE 88 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCce-----------------EEEEecccchhh-hCCHHHhhccchhhhhhcchhh
Confidence 4667788888774 56665555544433 377899999999 55655554 4589999999999
Q ss_pred ccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCC
Q 047152 647 LTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGN 716 (776)
Q Consensus 647 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN 716 (776)
++ .+|.++..++.|+.|+++.|.+. ..|.-+..|.+|..|+..+|... +||......+...+.--||
T Consensus 89 is-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 89 IS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGN 155 (177)
T ss_pred hh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcC
Confidence 99 78999999999999999999998 67777888999999999999885 6776544444444433355
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=6.4e-07 Score=87.29 Aligned_cols=64 Identities=28% Similarity=0.268 Sum_probs=30.2
Q ss_pred CCCCCCEEeCCCCCCCCC-CCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCC
Q 047152 110 KLQHLTYLDLSRNNFSGS-SIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNL 173 (776)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 173 (776)
..++++.|||.+|.|+.- ++-.-+.++++|++|+|+.|.+...|-..-..+.+|++|-|.+..+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 345566666666655531 1222344555666666666655432221112334555555544443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=6.1e-06 Score=94.38 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=51.4
Q ss_pred CCCCCEEecCCCCCCCC-CCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCC
Q 047152 136 LGKLSYLGLSSAEFAGP-IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSL 214 (776)
Q Consensus 136 l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 214 (776)
||.|+.|.+++=.+... .-....++++|..||+|+.++. ....++++++|+.|.+.+-.+..... ...+-++++|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~---nl~GIS~LknLq~L~mrnLe~e~~~~-l~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS---NLSGISRLKNLQVLSMRNLEFESYQD-LIDLFNLKKL 222 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc---CcHHHhccccHHHHhccCCCCCchhh-HHHHhcccCC
Confidence 44555555544333211 1112234455555555554442 22444455555555444444443222 1233345555
Q ss_pred CEEEccCCCCCCCC--chh-hhcCCCCCCccEEEcCCCCCCCCchhhH
Q 047152 215 TTLSLYSCDLPPII--PSS-LLNLNSSNSLEVIDLTENNLTNSVYPWL 259 (776)
Q Consensus 215 ~~L~L~~n~l~~~~--~~~-l~~l~~~~~L~~L~Ls~n~l~~~~~~~l 259 (776)
++||+|........ ... +..-..+++|+.||.|+..+.+.+...+
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 55555544332211 111 1000112677777777766665444433
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=9.1e-06 Score=56.89 Aligned_cols=35 Identities=40% Similarity=0.629 Sum_probs=13.8
Q ss_pred ccEEEccCCCCccCCchhhhccccCCEEECcCCccc
Q 047152 613 VKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLT 648 (776)
Q Consensus 613 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 648 (776)
|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 344444444444 23333444444444444444443
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.82 E-value=8.7e-06 Score=78.80 Aligned_cols=115 Identities=23% Similarity=0.210 Sum_probs=78.2
Q ss_pred eeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCC--CCCCCCCccCCCCCCCCEEeccCCCCCCCCCc
Q 047152 102 GKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSA--EFAGPIPHQLGNLSRLQFLDLSFNNLFSGENL 179 (776)
Q Consensus 102 g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~ 179 (776)
|.+..-...+..|+.|++.+..++.. ..+..|++|++|.+|.| ++++.++.....+++|++|++++|++......
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence 33444445556666777776666532 34566889999999999 66666666666779999999999998765666
Q ss_pred hhhccCCCCcEEEccCCCCCCcchh-hHhhcCCCCCCEEEc
Q 047152 180 DWLSHLSSLIYLYLDLNDLSNFSNW-VQLLSKLHSLTTLSL 219 (776)
Q Consensus 180 ~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L 219 (776)
..+..+++|..|++.+|.-+..... -..+.-+++|++|+-
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 6777888888888888766654221 233455666666654
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.76 E-value=5.2e-06 Score=84.98 Aligned_cols=134 Identities=21% Similarity=0.132 Sum_probs=70.7
Q ss_pred CCCCCCEEEccCCCCCC---CchhhcccCCCcEEeccCCcC-CCccchHHhhccCCCcCCCccEEEcccccccccC--CC
Q 047152 287 RMVSLRYLDLSSNELRG---IPKFLGNMCGLKILYLSGKEL-KGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSM--PN 360 (776)
Q Consensus 287 ~l~~L~~L~L~~n~l~~---ip~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~--~~ 360 (776)
.+..|+.|+.+++.-.+ +-.--.+..+|+++.++.++- +..-...++. ..+.|+.+++..+...... ..
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-----n~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-----NCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-----CChhhhhhcccccceehhhhHhh
Confidence 45667777776654322 212233556777777777652 2111111111 1126777777766543221 11
Q ss_pred -ccCCCCCCEEeccCcccc-cc----chhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCc
Q 047152 361 -LGEFSSLKQLNLENNLLN-GT----IHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNS 425 (776)
Q Consensus 361 -l~~l~~L~~L~Ls~n~l~-~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 425 (776)
-.+++.|+++.++++... +. ....-..+..|+.+.++++.....-....+..+++|+.+++.+++
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 346777888888777532 21 011123456677778877765433222345566777777776654
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=3.5e-05 Score=53.93 Aligned_cols=36 Identities=36% Similarity=0.536 Sum_probs=18.0
Q ss_pred CCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCC
Q 047152 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELK 325 (776)
Q Consensus 290 ~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~ 325 (776)
+|++|++++|+++.+|..++++++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 455555555555555544555555555555555544
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.72 E-value=5.2e-05 Score=70.32 Aligned_cols=107 Identities=28% Similarity=0.274 Sum_probs=67.6
Q ss_pred CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEE
Q 047152 112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYL 191 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 191 (776)
.....+||++|.+... ..|..++.|.+|.+++|+|+..-|.--.-+++|..|.|.+|.+...+....+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4567788888877632 3566778888888888888755554334566788888888877666666666777777777
Q ss_pred EccCCCCCCcchh-hHhhcCCCCCCEEEccC
Q 047152 192 YLDLNDLSNFSNW-VQLLSKLHSLTTLSLYS 221 (776)
Q Consensus 192 ~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L~~ 221 (776)
.+-+|..+..... ...+..+++|++||...
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777666543211 11234444555544443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00014 Score=76.68 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=26.0
Q ss_pred CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCC
Q 047152 501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNN 553 (776)
Q Consensus 501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N 553 (776)
..|++++|.++. +|..+.+|+.|.++++.--...|..+ .++|++|++++|
T Consensus 55 ~~L~Is~c~L~s-LP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 55 GRLYIKDCDIES-LPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CEEEeCCCCCcc-cCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 566666665553 34445566666666532222333322 245666666665
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.68 E-value=2.9e-06 Score=86.81 Aligned_cols=298 Identities=19% Similarity=0.161 Sum_probs=146.6
Q ss_pred CCCEEeCCCCCCCCC-CCCccccCCCCCCEEecCCCC-CCCCCCccC-CCCCCCCEEeccCCCCCCCCCch-hhccCCCC
Q 047152 113 HLTYLDLSRNNFSGS-SIPEFLGSLGKLSYLGLSSAE-FAGPIPHQL-GNLSRLQFLDLSFNNLFSGENLD-WLSHLSSL 188 (776)
Q Consensus 113 ~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L 188 (776)
.|+.|.++++.=.+. .+-..-.+++++++|++.++. ++...-.++ ..+++|++|+|..|...+..... ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 355555555532221 122233455666666666554 221111112 24566666666553321111112 23456666
Q ss_pred cEEEccCCC-CCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCC-CCCCccEEEcCCCC-CCCCch-hhHhhcCC
Q 047152 189 IYLYLDLND-LSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLN-SSNSLEVIDLTENN-LTNSVY-PWLFNVSS 264 (776)
Q Consensus 189 ~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~~~~L~~L~Ls~n~-l~~~~~-~~l~~~~~ 264 (776)
++|+++++. +++ ..+.....++..++.+.+.+|.=.+ ...+.... ....+..+++..+. ++...- ..-..+..
T Consensus 219 ~~lNlSwc~qi~~-~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 219 KYLNLSWCPQISG-NGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHhhhccCchhhc-CcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 666666653 222 2333445556666666665542111 11111100 00233444443432 232211 11122333
Q ss_pred CCcCEEEccCCccccC-cchhh-cCCCCCCEEEccCCC-CCC--CchhhcccCCCcEEeccCCcCCCccchHHhhccCCC
Q 047152 265 SLVDRISLPSNQLQGS-IPEAF-GRMVSLRYLDLSSNE-LRG--IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGC 339 (776)
Q Consensus 265 ~~L~~L~L~~n~l~~~-~p~~l-~~l~~L~~L~L~~n~-l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~ 339 (776)
++.++.+++...+. .-.++ .+..+|+.+.++.++ +++ +-.--.+.+.|+.+++..+...... .+..+...|
T Consensus 296 --lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls~~C 371 (483)
T KOG4341|consen 296 --LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLSRNC 371 (483)
T ss_pred --hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhccCC
Confidence 67777766654322 11222 466788888888774 444 2222345677888888777654222 234333222
Q ss_pred cCCCccEEEcccccccccC--CC----ccCCCCCCEEeccCcccc-ccchhcccCCCCCcEEECCCcccccccc-HHhhh
Q 047152 340 TKNSLEWLHLSSNEITGSM--PN----LGEFSSLKQLNLENNLLN-GTIHKSIGQLFKLEMLKLNGNSLGGVIS-EALFS 411 (776)
Q Consensus 340 ~~~~L~~L~L~~n~l~~~~--~~----l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~ 411 (776)
+.|+.+.+++|...... .. -..+..|+.+.++++... +..-+.+..+++|+.+++-+++-...-+ ...-.
T Consensus 372 --~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 372 --PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred --chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence 27888888887654332 11 245667888999988754 3344556778899999988876321111 11234
Q ss_pred CCCCCcEE
Q 047152 412 NLSRLAAL 419 (776)
Q Consensus 412 ~l~~L~~L 419 (776)
++|+++..
T Consensus 450 ~lp~i~v~ 457 (483)
T KOG4341|consen 450 HLPNIKVH 457 (483)
T ss_pred hCccceeh
Confidence 56665544
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=5.9e-05 Score=70.00 Aligned_cols=129 Identities=23% Similarity=0.267 Sum_probs=85.0
Q ss_pred CEEeCCCCCCCCCCCCcccc-CCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEc
Q 047152 115 TYLDLSRNNFSGSSIPEFLG-SLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYL 193 (776)
Q Consensus 115 ~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L 193 (776)
+.++|++.++..+ ..++ .+.+...+||++|.+. .+ ..|..++.|.+|.|++|+|+. ..+.--.-+++|+.|.|
T Consensus 22 ~e~~LR~lkip~i---enlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 22 RELDLRGLKIPVI---ENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccch---hhccccccccceecccccchh-hc-ccCCCccccceEEecCCccee-eccchhhhccccceEEe
Confidence 4555655544321 1122 2346778999999886 33 347788899999999999875 33333445678999999
Q ss_pred cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCC
Q 047152 194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENN 250 (776)
Q Consensus 194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~ 250 (776)
.+|++..+.+ ..-+..|++|++|.+-+|..+...---..-+-.+++|++||..+-.
T Consensus 96 tnNsi~~l~d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 96 TNNSIQELGD-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCcchhhhhh-cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9998887644 3457788899999998887765432111112223889999887654
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=8.9e-05 Score=85.00 Aligned_cols=108 Identities=23% Similarity=0.313 Sum_probs=61.3
Q ss_pred CCCCEEecCCCCCCCC-CCccCC-CCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCC
Q 047152 137 GKLSYLGLSSAEFAGP-IPHQLG-NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSL 214 (776)
Q Consensus 137 ~~L~~L~Ls~n~l~~~-~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 214 (776)
.+|++||+++...-.. -|..++ .+|.|++|.+++-.+....-.....++++|+.||+|+.+++.+ ..++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence 4677777776543221 222333 4677777777765554322223445677777777777777663 456667777
Q ss_pred CEEEccCCCCCC-CCchhhhcCCCCCCccEEEcCCCCC
Q 047152 215 TTLSLYSCDLPP-IIPSSLLNLNSSNSLEVIDLTENNL 251 (776)
Q Consensus 215 ~~L~L~~n~l~~-~~~~~l~~l~~~~~L~~L~Ls~n~l 251 (776)
++|.+.+-.+.. ..-..+.+| ++|++||+|....
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L---~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNL---KKLRVLDISRDKN 232 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcc---cCCCeeecccccc
Confidence 777666655543 222334444 6666666665543
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.36 E-value=0.00056 Score=72.26 Aligned_cols=14 Identities=36% Similarity=0.249 Sum_probs=8.1
Q ss_pred CCCcEEeccCCcCC
Q 047152 312 CGLKILYLSGKELK 325 (776)
Q Consensus 312 ~~L~~L~Ls~n~l~ 325 (776)
++|++|++++|...
T Consensus 156 sSLk~L~Is~c~~i 169 (426)
T PRK15386 156 PSLKTLSLTGCSNI 169 (426)
T ss_pred CcccEEEecCCCcc
Confidence 35666666665543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00077 Score=65.60 Aligned_cols=95 Identities=20% Similarity=0.271 Sum_probs=63.0
Q ss_pred CCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCC-CCchhhccCCCCcEEEccCCCCCCcchhhHh
Q 047152 129 IPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSG-ENLDWLSHLSSLIYLYLDLNDLSNFSNWVQL 207 (776)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 207 (776)
+......+..|+.|++.+..++.. ..+-.|++|++|.+|.|+.... +......++++|++|++++|++..+.+ ...
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cch
Confidence 444445566778888777777632 3466788999999999943321 233334556888888888888876533 244
Q ss_pred hcCCCCCCEEEccCCCCCC
Q 047152 208 LSKLHSLTTLSLYSCDLPP 226 (776)
Q Consensus 208 l~~l~~L~~L~L~~n~l~~ 226 (776)
+..+.+|..|++..|..+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhcchhhhhcccCCccc
Confidence 5667777777877776554
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=8.3e-05 Score=72.23 Aligned_cols=81 Identities=26% Similarity=0.262 Sum_probs=37.8
Q ss_pred CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEE
Q 047152 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY 192 (776)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 192 (776)
..+.|++-++.++++ ....+++.|++|.||-|.++.. ..+..+++|++|.|..|.|.+......+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 334444444444433 1233455555555555555422 12444555555555555554333333445555555555
Q ss_pred ccCCCC
Q 047152 193 LDLNDL 198 (776)
Q Consensus 193 Ls~n~l 198 (776)
|..|..
T Consensus 95 L~ENPC 100 (388)
T KOG2123|consen 95 LDENPC 100 (388)
T ss_pred hccCCc
Confidence 555543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.00013 Score=70.87 Aligned_cols=102 Identities=25% Similarity=0.225 Sum_probs=79.0
Q ss_pred CCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCC
Q 047152 135 SLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSL 214 (776)
Q Consensus 135 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 214 (776)
.+.+.+.|+..+|.++++ .....++.|++|.||-|+|+ ....+..|++|++|+|..|.|.++.. ...+.++++|
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sldE-L~YLknlpsL 90 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESLDE-LEYLKNLPSL 90 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccHHH-HHHHhcCchh
Confidence 356778899999998853 23457899999999999984 45678899999999999999998754 4678899999
Q ss_pred CEEEccCCCCCCCCch-----hhhcCCCCCCccEEE
Q 047152 215 TTLSLYSCDLPPIIPS-----SLLNLNSSNSLEVID 245 (776)
Q Consensus 215 ~~L~L~~n~l~~~~~~-----~l~~l~~~~~L~~L~ 245 (776)
+.|.|..|.-.+..+. .+..+ ++|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~L---PnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVL---PNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHc---ccchhcc
Confidence 9999999877665543 33445 6666665
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.26 E-value=0.0095 Score=53.33 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=20.3
Q ss_pred cccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCC
Q 047152 538 LCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNI 593 (776)
Q Consensus 538 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 593 (776)
.|..+++|+.+.+.. .+...-..+|.++++|+.+.+.++ +.......|..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l 60 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSL 60 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccc
Confidence 344455566655553 344334444555555666655553 332333334444334
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.08 E-value=0.0015 Score=73.67 Aligned_cols=112 Identities=25% Similarity=0.202 Sum_probs=48.3
Q ss_pred CCCCCEEeCCCCC-CCCCCCCccccCCCCCCEEecCCC-CCCCCCC----ccCCCCCCCCEEeccCCC-CCCCCCchhhc
Q 047152 111 LQHLTYLDLSRNN-FSGSSIPEFLGSLGKLSYLGLSSA-EFAGPIP----HQLGNLSRLQFLDLSFNN-LFSGENLDWLS 183 (776)
Q Consensus 111 l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~-~~~~~~~~~l~ 183 (776)
++.|+.|.+.++. +....+-.....+++|+.|+++++ ......+ .....+++|+.|+++++. +++ .....++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHHHHH
Confidence 4555555555542 221111223344556666666552 1111111 112234555555555555 222 2222222
Q ss_pred c-CCCCcEEEccCCC-CCCcchhhHhhcCCCCCCEEEccCCCC
Q 047152 184 H-LSSLIYLYLDLND-LSNFSNWVQLLSKLHSLTTLSLYSCDL 224 (776)
Q Consensus 184 ~-l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l 224 (776)
. +++|++|.+.++. +++. .+......++.|++|++++|..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCcc
Confidence 2 5555555544444 2221 2334444555555555555543
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.89 E-value=0.026 Score=50.42 Aligned_cols=120 Identities=18% Similarity=0.296 Sum_probs=47.9
Q ss_pred hhcCCCCCCEEEccCCCCCCCc-hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCC-Cc
Q 047152 284 AFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP-NL 361 (776)
Q Consensus 284 ~l~~l~~L~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~-~l 361 (776)
+|.++++|+.+.+.. .+..++ ..|..+++|+.+.+..+ +.......|.... +++.+.+.+ .+..... .+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~------~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK------SLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T------T-EEEEETS-TT-EE-TTTT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc------ccccccccc-cccccccccc
Confidence 455666666666653 344433 33555556666666553 4443334444444 566666654 2221222 25
Q ss_pred cCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCC
Q 047152 362 GEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRL 416 (776)
Q Consensus 362 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L 416 (776)
..+++|+.+++..+ +.......+.++ +|+.+.+..+ +. .++...|.++++|
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-IT-KIEENAFKNCTKL 128 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB--S-S----GGG-----
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECCC-cc-EECCccccccccC
Confidence 56677777777554 443344455555 7777776653 22 3344456666555
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.47 E-value=0.0063 Score=35.32 Aligned_cols=12 Identities=50% Similarity=0.833 Sum_probs=5.4
Q ss_pred CCeeeCcCceee
Q 047152 661 LDFLDLSRNQFF 672 (776)
Q Consensus 661 L~~L~Ls~N~l~ 672 (776)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.46 E-value=0.0043 Score=69.83 Aligned_cols=118 Identities=25% Similarity=0.108 Sum_probs=81.6
Q ss_pred cccccCCCCCCEEeCCCC-CCCCC---CCCccccCCCCCCEEecCCCC-CCCCCCccCC-CCCCCCEEeccCCC-CCCCC
Q 047152 105 TPALLKLQHLTYLDLSRN-NFSGS---SIPEFLGSLGKLSYLGLSSAE-FAGPIPHQLG-NLSRLQFLDLSFNN-LFSGE 177 (776)
Q Consensus 105 ~~~l~~l~~L~~L~Ls~n-~l~~~---~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~-~~~~~ 177 (776)
.+....+++|+.|+++++ ..... ........+++|+.|+++.+. ++...-..++ .+++|++|.+.++. +++.+
T Consensus 207 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g 286 (482)
T KOG1947|consen 207 DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG 286 (482)
T ss_pred HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH
Confidence 355678899999999973 21111 012344567899999999998 5544333444 38899999988887 55544
Q ss_pred CchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCC
Q 047152 178 NLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSC 222 (776)
Q Consensus 178 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n 222 (776)
.......+++|++|+++++.......+.....++++|+.|.+...
T Consensus 287 l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 287 LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 445567799999999999876554445556677888877665443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.30 E-value=0.0073 Score=35.05 Aligned_cols=20 Identities=45% Similarity=0.539 Sum_probs=11.0
Q ss_pred CCEEECcCCcccCcCcccccC
Q 047152 637 LVALNLSRNNLTGQITPKIGQ 657 (776)
Q Consensus 637 L~~L~Ls~N~l~~~~p~~l~~ 657 (776)
|++|||++|+++ .+|++|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 555666666655 45555443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.45 E-value=0.0011 Score=72.71 Aligned_cols=61 Identities=28% Similarity=0.357 Sum_probs=36.1
Q ss_pred ccEEEccccccccc-----CCCccCC-CCCCEEeccCccccccc----hhcccCCCCCcEEECCCcccccc
Q 047152 344 LEWLHLSSNEITGS-----MPNLGEF-SSLKQLNLENNLLNGTI----HKSIGQLFKLEMLKLNGNSLGGV 404 (776)
Q Consensus 344 L~~L~L~~n~l~~~-----~~~l~~l-~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~ 404 (776)
+.++++..|.+.+. .|.+..+ ..+++++++.|.++..- ...+..++.++++.+++|.+...
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 44466666655432 1113333 56677777777776533 33445566788888888877543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.43 E-value=0.0014 Score=72.15 Aligned_cols=38 Identities=37% Similarity=0.375 Sum_probs=23.6
Q ss_pred CccEEEcccccccccCCC-----ccCCCCCCEEeccCcccccc
Q 047152 343 SLEWLHLSSNEITGSMPN-----LGEFSSLKQLNLENNLLNGT 380 (776)
Q Consensus 343 ~L~~L~L~~n~l~~~~~~-----l~~l~~L~~L~Ls~n~l~~~ 380 (776)
.+++++++.|.++..... +..++.++++.+++|.+.+.
T Consensus 263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 456666666666543332 44556777788877777653
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.34 E-value=0.01 Score=56.61 Aligned_cols=82 Identities=24% Similarity=0.221 Sum_probs=58.9
Q ss_pred cccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCC
Q 047152 612 LVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLS 691 (776)
Q Consensus 612 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 691 (776)
..+.||++.|++. ..-..|.-++.|..|+++.|.+. ..|..++++..+..+++.+|..+ ..|.++...+.+++++.-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 3466777777766 44455666777777777777776 56777777777777777777776 667777777777777777
Q ss_pred CCcce
Q 047152 692 YNNLS 696 (776)
Q Consensus 692 ~N~l~ 696 (776)
.|++.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 77664
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.25 E-value=0.0039 Score=59.34 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=29.0
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCC
Q 047152 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNN 172 (776)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 172 (776)
|..++.+..||++.|.+. ..|..++.+..++.+++..|..+ ..|.+++..+.++++++-+|.
T Consensus 61 ~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence 344444444455544444 24444444444444444444444 444444444444444444443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.69 E-value=0.14 Score=27.44 Aligned_cols=11 Identities=55% Similarity=0.709 Sum_probs=3.3
Q ss_pred CCEEECcCCcc
Q 047152 637 LVALNLSRNNL 647 (776)
Q Consensus 637 L~~L~Ls~N~l 647 (776)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33444444443
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.48 E-value=0.17 Score=27.18 Aligned_cols=14 Identities=57% Similarity=0.759 Sum_probs=5.1
Q ss_pred CCCEEEccCCCCCC
Q 047152 290 SLRYLDLSSNELRG 303 (776)
Q Consensus 290 ~L~~L~L~~n~l~~ 303 (776)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.04 E-value=0.58 Score=28.24 Aligned_cols=13 Identities=46% Similarity=0.644 Sum_probs=5.5
Q ss_pred cCCEEECcCCccc
Q 047152 636 GLVALNLSRNNLT 648 (776)
Q Consensus 636 ~L~~L~Ls~N~l~ 648 (776)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.04 E-value=0.58 Score=28.24 Aligned_cols=13 Identities=46% Similarity=0.644 Sum_probs=5.5
Q ss_pred cCCEEECcCCccc
Q 047152 636 GLVALNLSRNNLT 648 (776)
Q Consensus 636 ~L~~L~Ls~N~l~ 648 (776)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.27 E-value=0.63 Score=28.08 Aligned_cols=14 Identities=50% Similarity=0.501 Sum_probs=8.8
Q ss_pred CCCCeeeCcCceee
Q 047152 659 KSLDFLDLSRNQFF 672 (776)
Q Consensus 659 ~~L~~L~Ls~N~l~ 672 (776)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.27 E-value=0.63 Score=28.08 Aligned_cols=14 Identities=50% Similarity=0.501 Sum_probs=8.8
Q ss_pred CCCCeeeCcCceee
Q 047152 659 KSLDFLDLSRNQFF 672 (776)
Q Consensus 659 ~~L~~L~Ls~N~l~ 672 (776)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.51 E-value=0.15 Score=48.01 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=15.5
Q ss_pred CCEEeCCCCCCCCCCCCccccCCCCCCEEecCCC
Q 047152 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSA 147 (776)
Q Consensus 114 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n 147 (776)
++.+|-++..|... .-+.+..++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHH-HHHHHhccchhhhheeccc
Confidence 44555555554432 2233444445555555444
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.99 E-value=0.58 Score=44.23 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=23.4
Q ss_pred CCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCC
Q 047152 138 KLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNL 173 (776)
Q Consensus 138 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 173 (776)
.++.+|-++..+..+.-+.+.+++.++.|.+.+|.-
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~ 137 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY 137 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccc
Confidence 466777777777665555666666666666666653
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.20 E-value=0.57 Score=27.65 Aligned_cols=15 Identities=47% Similarity=0.536 Sum_probs=6.7
Q ss_pred CCccEEECcCCcccc
Q 047152 543 NRLIYLDLSNNLLSG 557 (776)
Q Consensus 543 ~~L~~L~Ls~N~l~~ 557 (776)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.63 E-value=3.5 Score=24.96 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=7.1
Q ss_pred CCCcEEEccCCCCCC
Q 047152 186 SSLIYLYLDLNDLSN 200 (776)
Q Consensus 186 ~~L~~L~Ls~n~l~~ 200 (776)
++|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 344455555554443
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.17 E-value=3.5 Score=24.88 Aligned_cols=13 Identities=54% Similarity=0.662 Sum_probs=7.0
Q ss_pred cCCEEECcCCccc
Q 047152 636 GLVALNLSRNNLT 648 (776)
Q Consensus 636 ~L~~L~Ls~N~l~ 648 (776)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3555555555555
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=66.52 E-value=3.5 Score=53.95 Aligned_cols=37 Identities=30% Similarity=0.242 Sum_probs=29.5
Q ss_pred eCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152 665 DLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 665 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
||++|+|+...+..|..+++|+.|+|++|+|.|.|.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 6788888866667788888888888888888887664
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.95 E-value=4.9 Score=44.03 Aligned_cols=36 Identities=28% Similarity=0.219 Sum_probs=20.6
Q ss_pred CCCCCCEEEccCCCCCCC---chhhcccCCCcEEeccCC
Q 047152 287 RMVSLRYLDLSSNELRGI---PKFLGNMCGLKILYLSGK 322 (776)
Q Consensus 287 ~l~~L~~L~L~~n~l~~i---p~~l~~l~~L~~L~Ls~n 322 (776)
+.+.+..+.|++|++..+ ..--...++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 455666667777766552 222234456666666666
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.31 E-value=12 Score=23.04 Aligned_cols=14 Identities=43% Similarity=0.546 Sum_probs=8.1
Q ss_pred CCCCEEeCCCCCCC
Q 047152 112 QHLTYLDLSRNNFS 125 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~ 125 (776)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666554
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.64 E-value=39 Score=36.63 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=9.8
Q ss_pred CCCCEEeCCCCCCCC
Q 047152 112 QHLTYLDLSRNNFSG 126 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~~ 126 (776)
+.++++|++.|.+..
T Consensus 165 pr~r~~dls~npi~d 179 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGD 179 (553)
T ss_pred chhhhhccCCCcccc
Confidence 446777777776544
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.56 E-value=17 Score=39.99 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=19.6
Q ss_pred CCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCC
Q 047152 185 LSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSC 222 (776)
Q Consensus 185 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n 222 (776)
.+.+..+.|++|++..+..+...-...|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555555666665555443333344455555555555
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=32.51 E-value=2.2e+02 Score=31.23 Aligned_cols=60 Identities=33% Similarity=0.276 Sum_probs=33.3
Q ss_pred CCCEEeCCCCCCCCCCCCccccCC---CCCCEEecCCCCCCC---CCCccCCCCCCCCEEeccCCCC
Q 047152 113 HLTYLDLSRNNFSGSSIPEFLGSL---GKLSYLGLSSAEFAG---PIPHQLGNLSRLQFLDLSFNNL 173 (776)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~p~~~~~l---~~L~~L~Ls~n~l~~---~~p~~l~~l~~L~~L~Ls~n~~ 173 (776)
.+.++||+.|..... +|..+..+ .-++.++.+...+.- .-+-..+.-++|.+.+++.|..
T Consensus 215 ~lteldls~n~~Kdd-ip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDD-IPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCcc-chhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 467777777776653 66543322 246666666654421 1122234556777777777654
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.94 E-value=49 Score=19.69 Aligned_cols=12 Identities=42% Similarity=0.299 Sum_probs=6.5
Q ss_pred CCCCEEeccCCC
Q 047152 161 SRLQFLDLSFNN 172 (776)
Q Consensus 161 ~~L~~L~Ls~n~ 172 (776)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555554
Done!