Query 047152
Match_columns 776
No_of_seqs 864 out of 4733
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.3E-89 2.8E-93 805.8 51.5 654 34-732 7-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.1E-67 1.1E-71 621.3 41.7 560 104-697 92-741 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5.1E-60 1.7E-64 554.7 52.1 573 104-701 19-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-57 5.1E-62 533.7 51.4 583 115-724 7-627 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-55 1.1E-59 523.9 41.8 551 111-739 23-599 (844)
6 3t6q_A CD180 antigen; protein- 100.0 3.6E-55 1.2E-59 506.6 39.7 518 113-702 34-566 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.3E-53 4.4E-58 493.6 41.5 532 116-723 16-564 (606)
8 4eco_A Uncharacterized protein 100.0 3.3E-55 1.1E-59 506.6 25.6 510 36-698 27-602 (636)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-53 1.2E-57 490.1 38.5 533 87-702 15-564 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 3.4E-53 1.2E-57 496.9 32.8 517 32-695 262-863 (876)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-51 4.8E-56 492.4 38.6 528 116-725 8-566 (844)
12 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-51 9.3E-56 474.1 39.6 516 82-676 31-562 (606)
13 2z63_A TOLL-like receptor 4, v 100.0 2.8E-49 9.5E-54 454.1 35.7 494 112-705 28-540 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-48 1.1E-52 443.0 32.5 495 70-702 3-516 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 1.6E-46 5.6E-51 431.0 36.1 515 114-724 9-536 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 4E-47 1.4E-51 430.7 27.4 454 116-701 4-486 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 3.6E-46 1.2E-50 426.1 30.9 487 114-723 7-514 (549)
18 4g8a_A TOLL-like receptor 4; l 100.0 6.9E-45 2.4E-49 423.2 41.3 514 112-701 52-585 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 6E-45 2.1E-49 412.8 28.4 458 140-724 3-486 (520)
20 4eco_A Uncharacterized protein 100.0 5.1E-46 1.7E-50 429.7 18.3 463 161-721 81-602 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 4.9E-45 1.7E-49 427.8 24.1 384 275-723 435-870 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 4.5E-43 1.5E-47 408.0 39.6 516 128-724 45-585 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.2E-44 1.4E-48 409.4 29.4 491 86-730 34-546 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.8E-42 1.3E-46 393.2 23.0 456 185-724 30-515 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 7.4E-42 2.5E-46 377.6 19.0 416 109-718 8-428 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 1.8E-39 6.2E-44 361.5 30.5 144 542-705 274-417 (455)
27 1ogq_A PGIP-2, polygalacturona 100.0 7.4E-41 2.5E-45 352.2 17.8 293 35-376 2-302 (313)
28 1jl5_A Outer protein YOPM; leu 100.0 2.3E-39 7.8E-44 357.7 24.4 407 83-701 11-434 (454)
29 3v47_A TOLL-like receptor 5B a 100.0 6.8E-38 2.3E-42 348.8 27.9 357 112-491 30-413 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3E-36 1E-40 333.1 30.1 158 501-702 236-393 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 4.4E-36 1.5E-40 331.8 28.4 366 147-680 28-395 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 5.3E-36 1.8E-40 335.4 25.1 345 293-723 15-360 (477)
33 1o6v_A Internalin A; bacterial 100.0 1.8E-34 6E-39 321.6 35.1 81 160-252 45-125 (466)
34 1o6v_A Internalin A; bacterial 100.0 2.3E-34 7.8E-39 320.7 34.4 147 519-697 243-389 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 1.6E-33 5.3E-38 315.4 27.5 302 112-429 32-335 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 2E-33 6.8E-38 305.8 27.2 333 288-723 44-378 (390)
37 3oja_B Anopheles plasmodium-re 100.0 2.1E-33 7.2E-38 322.5 27.3 333 288-723 50-384 (597)
38 1ogq_A PGIP-2, polygalacturona 100.0 5.5E-34 1.9E-38 299.7 19.5 187 519-728 125-312 (313)
39 3o6n_A APL1; leucine-rich repe 100.0 7.5E-33 2.6E-37 301.3 26.4 309 109-451 42-352 (390)
40 4fmz_A Internalin; leucine ric 100.0 9E-32 3.1E-36 288.0 32.8 284 108-426 62-345 (347)
41 4fmz_A Internalin; leucine ric 100.0 3.6E-31 1.2E-35 283.3 32.0 307 108-451 40-346 (347)
42 3oja_B Anopheles plasmodium-re 100.0 7.9E-32 2.7E-36 309.4 28.0 310 109-451 48-358 (597)
43 4fcg_A Uncharacterized protein 100.0 1.1E-32 3.6E-37 291.6 15.4 270 34-322 22-311 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-32 5.7E-37 305.8 3.8 65 161-225 3-69 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 4.3E-33 1.5E-37 310.6 -2.8 232 188-428 87-355 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-29 3.6E-34 269.9 23.0 288 113-425 34-331 (332)
47 1xku_A Decorin; proteoglycan, 100.0 5.2E-29 1.8E-33 264.3 28.2 287 85-424 33-329 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 3E-29 1E-33 266.4 25.9 287 290-694 34-331 (332)
49 1xku_A Decorin; proteoglycan, 100.0 1.1E-28 3.9E-33 261.8 28.0 288 290-694 32-330 (330)
50 3ogk_B Coronatine-insensitive 100.0 3.2E-31 1.1E-35 305.2 -0.1 442 68-583 39-529 (592)
51 3ogk_B Coronatine-insensitive 100.0 4E-30 1.4E-34 296.1 3.9 186 129-321 65-279 (592)
52 2z66_A Variable lymphocyte rec 100.0 2.7E-27 9.3E-32 248.3 20.9 253 344-701 9-266 (306)
53 2z80_A TOLL-like receptor 2, v 99.9 7.8E-28 2.7E-32 257.8 16.1 285 67-406 26-318 (353)
54 2z80_A TOLL-like receptor 2, v 99.9 5.7E-27 2E-31 251.1 19.2 277 110-429 29-316 (353)
55 3o53_A Protein LRIM1, AGAP0063 99.9 5.6E-28 1.9E-32 254.5 8.8 266 344-701 12-281 (317)
56 2z66_A Variable lymphocyte rec 99.9 8.1E-27 2.8E-31 244.7 16.2 249 115-404 10-263 (306)
57 4fcg_A Uncharacterized protein 99.9 3.1E-26 1.1E-30 242.0 19.7 276 48-354 22-313 (328)
58 3zyi_A Leucine-rich repeat-con 99.9 1.6E-25 5.3E-30 248.3 25.4 161 519-701 147-308 (452)
59 3g06_A SSPH2 (leucine-rich rep 99.9 2.9E-26 9.8E-31 260.5 19.3 286 57-407 11-302 (622)
60 3zyj_A Leucine-rich repeat-con 99.9 2E-25 6.9E-30 246.5 25.4 252 344-701 45-297 (440)
61 1ozn_A Reticulon 4 receptor; N 99.9 4.2E-26 1.4E-30 236.6 18.6 165 537-721 99-263 (285)
62 1ozn_A Reticulon 4 receptor; N 99.9 6.3E-26 2.2E-30 235.2 18.2 223 86-325 14-238 (285)
63 1wwl_A Monocyte differentiatio 99.9 8.1E-28 2.8E-32 252.7 1.6 270 58-379 21-310 (312)
64 3zyi_A Leucine-rich repeat-con 99.9 3.9E-25 1.3E-29 245.1 22.8 246 114-401 56-302 (452)
65 1wwl_A Monocyte differentiatio 99.9 4.8E-27 1.6E-31 246.8 6.8 254 362-698 40-311 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.9 8.7E-25 3E-29 248.3 25.6 262 343-701 41-302 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 3.3E-27 1.1E-31 248.7 4.4 248 99-397 21-270 (317)
68 3oja_A Leucine-rich immune mol 99.9 3.5E-26 1.2E-30 254.8 11.5 237 363-691 32-270 (487)
69 2p1m_B Transport inhibitor res 99.9 7.8E-28 2.7E-32 277.1 -2.1 213 68-317 32-270 (594)
70 3zyj_A Leucine-rich repeat-con 99.9 1E-24 3.5E-29 240.8 23.0 249 113-427 44-292 (440)
71 2p1m_B Transport inhibitor res 99.9 2.6E-27 8.7E-32 272.8 0.9 404 209-695 102-543 (594)
72 3oja_A Leucine-rich immune mol 99.9 3.2E-25 1.1E-29 247.1 12.4 234 113-397 35-270 (487)
73 2o6q_A Variable lymphocyte rec 99.9 1.4E-23 4.6E-28 215.6 22.2 217 68-326 2-219 (270)
74 2o6q_A Variable lymphocyte rec 99.9 5E-23 1.7E-27 211.4 22.4 200 502-701 20-223 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 4.8E-23 1.7E-27 212.4 21.4 162 521-703 78-244 (276)
76 1p9a_G Platelet glycoprotein I 99.9 4E-23 1.4E-27 214.0 20.2 195 501-699 13-211 (290)
77 2z62_A TOLL-like receptor 4, v 99.9 3.6E-23 1.2E-27 213.4 19.8 205 518-723 27-241 (276)
78 3m19_A Variable lymphocyte rec 99.9 8.6E-23 3E-27 207.2 17.7 210 501-731 17-232 (251)
79 1p9a_G Platelet glycoprotein I 99.9 5.1E-22 1.8E-26 205.6 20.1 205 107-326 5-209 (290)
80 3rfs_A Internalin B, repeat mo 99.9 1.3E-22 4.6E-27 208.3 14.9 225 115-390 22-247 (272)
81 2ast_B S-phase kinase-associat 99.9 2.3E-23 7.8E-28 221.5 8.9 237 67-322 33-282 (336)
82 3goz_A Leucine-rich repeat-con 99.9 7.1E-23 2.4E-27 219.8 10.6 261 117-406 3-301 (362)
83 3rfs_A Internalin B, repeat mo 99.9 9.2E-22 3.1E-26 202.1 16.3 182 108-302 37-218 (272)
84 2ca6_A RAN GTPase-activating p 99.9 2E-23 6.8E-28 226.4 3.4 248 129-406 24-320 (386)
85 3goz_A Leucine-rich repeat-con 99.9 3E-22 1E-26 214.9 10.8 262 141-430 2-300 (362)
86 2ast_B S-phase kinase-associat 99.9 4.5E-22 1.5E-26 211.5 10.5 199 112-322 47-257 (336)
87 2ca6_A RAN GTPase-activating p 99.9 2.7E-22 9.2E-27 217.5 8.8 238 180-428 26-317 (386)
88 1h6u_A Internalin H; cell adhe 99.9 8.7E-21 3E-25 198.4 19.6 195 108-356 37-231 (308)
89 4glp_A Monocyte differentiatio 99.9 9.7E-22 3.3E-26 206.1 11.9 229 110-356 62-308 (310)
90 4glp_A Monocyte differentiatio 99.8 1.8E-21 6.3E-26 204.0 11.3 227 84-326 65-308 (310)
91 2xwt_C Thyrotropin receptor; s 99.8 6.8E-21 2.3E-25 191.7 14.2 198 517-717 29-237 (239)
92 2xwt_C Thyrotropin receptor; s 99.8 4.8E-21 1.6E-25 192.8 12.6 197 112-322 31-236 (239)
93 3m19_A Variable lymphocyte rec 99.8 3.7E-20 1.3E-24 187.7 18.9 179 520-721 15-194 (251)
94 1h6u_A Internalin H; cell adhe 99.8 7.1E-20 2.4E-24 191.5 21.3 207 118-379 25-231 (308)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 4E-20 1.4E-24 183.0 13.5 158 522-702 14-172 (220)
96 2o6s_A Variable lymphocyte rec 99.8 6.3E-20 2.2E-24 180.3 14.2 175 501-702 10-184 (208)
97 3cvr_A Invasion plasmid antige 99.8 7.9E-20 2.7E-24 205.0 15.4 211 58-336 33-254 (571)
98 2v9t_B SLIT homolog 2 protein 99.8 1.1E-19 3.9E-24 179.8 13.5 155 523-700 15-169 (220)
99 3cvr_A Invasion plasmid antige 99.8 2.2E-19 7.4E-24 201.4 16.7 182 474-701 60-248 (571)
100 2o6s_A Variable lymphocyte rec 99.8 2.9E-19 9.8E-24 175.6 15.1 184 71-290 7-190 (208)
101 3e6j_A Variable lymphocyte rec 99.8 3.7E-19 1.3E-23 177.4 15.1 184 522-731 22-211 (229)
102 2xot_A Amphoterin-induced prot 99.8 1.6E-19 5.6E-24 193.3 13.2 180 501-700 21-206 (361)
103 4ay9_X Follicle-stimulating ho 99.8 3E-19 1E-23 190.4 14.2 86 112-200 30-118 (350)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-18 6.2E-23 171.1 16.0 156 501-676 14-170 (220)
105 4ay9_X Follicle-stimulating ho 99.8 1.4E-18 4.7E-23 185.3 14.4 125 115-248 12-137 (350)
106 2v9t_B SLIT homolog 2 protein 99.8 5E-18 1.7E-22 167.9 16.6 153 501-673 14-166 (220)
107 2xot_A Amphoterin-induced prot 99.8 1.3E-18 4.5E-23 186.2 12.4 179 521-723 20-206 (361)
108 1w8a_A SLIT protein; signaling 99.8 1.4E-18 4.7E-23 168.1 11.2 155 546-723 11-166 (192)
109 1h6t_A Internalin B; cell adhe 99.8 8.6E-18 2.9E-22 174.0 16.8 174 108-327 42-215 (291)
110 1h6t_A Internalin B; cell adhe 99.8 9.7E-18 3.3E-22 173.6 16.8 189 115-357 27-215 (291)
111 3e6j_A Variable lymphocyte rec 99.7 2.5E-17 8.5E-22 164.1 17.3 155 501-676 22-176 (229)
112 1m9s_A Internalin B; cell inva 99.7 2.2E-17 7.5E-22 187.4 17.4 129 108-253 39-167 (605)
113 1m9s_A Internalin B; cell inva 99.7 2.4E-17 8.2E-22 187.1 16.2 191 114-328 23-213 (605)
114 1dce_A Protein (RAB geranylger 99.7 1.2E-20 4E-25 213.1 -11.7 37 134-171 346-382 (567)
115 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.5E-24 204.4 -4.3 121 545-690 443-567 (567)
116 4ezg_A Putative uncharacterize 99.7 3.6E-17 1.2E-21 158.9 13.2 152 518-697 43-195 (197)
117 4b8c_D Glucose-repressible alc 99.7 2.6E-18 8.8E-23 200.1 5.8 240 36-375 129-369 (727)
118 1w8a_A SLIT protein; signaling 99.7 3.4E-17 1.1E-21 158.3 11.4 175 522-723 11-187 (192)
119 4ezg_A Putative uncharacterize 99.7 1.7E-16 5.7E-21 154.2 12.3 154 134-325 41-194 (197)
120 2wfh_A SLIT homolog 2 protein 99.7 1.2E-16 4E-21 154.4 11.1 131 546-700 13-143 (193)
121 1xeu_A Internalin C; cellular 99.7 1.8E-16 6.2E-21 161.3 12.3 148 518-698 40-187 (263)
122 1xeu_A Internalin C; cellular 99.7 8.4E-17 2.9E-21 163.8 8.2 124 111-252 18-141 (263)
123 2ell_A Acidic leucine-rich nuc 99.6 4.7E-16 1.6E-20 146.9 10.9 132 543-696 24-160 (168)
124 2je0_A Acidic leucine-rich nuc 99.6 4.8E-16 1.7E-20 143.5 8.9 128 543-692 17-149 (149)
125 2o6r_A Variable lymphocyte rec 99.6 2.1E-15 7.2E-20 143.7 13.1 134 545-701 9-142 (177)
126 4b8c_D Glucose-repressible alc 99.6 8.4E-17 2.9E-21 187.4 3.9 192 474-693 174-369 (727)
127 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4E-20 144.1 10.5 138 518-678 23-165 (168)
128 2je0_A Acidic leucine-rich nuc 99.6 2.2E-15 7.4E-20 139.1 9.2 129 518-668 16-149 (149)
129 2wfh_A SLIT homolog 2 protein 99.6 2.1E-14 7.3E-19 138.5 14.5 129 522-674 13-141 (193)
130 2o6r_A Variable lymphocyte rec 99.6 4E-14 1.4E-18 134.8 14.5 114 543-676 28-141 (177)
131 3sb4_A Hypothetical leucine ri 99.5 1.7E-14 5.8E-19 152.2 10.6 102 566-689 225-327 (329)
132 3sb4_A Hypothetical leucine ri 99.5 5.3E-15 1.8E-19 156.1 6.6 283 136-444 24-327 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.5 2.5E-14 8.5E-19 136.0 9.2 134 539-697 15-154 (176)
134 1ds9_A Outer arm dynein; leuci 99.5 4.1E-16 1.4E-20 151.6 -5.0 83 615-700 74-157 (198)
135 3g39_A Variable lymphocyte rec 99.5 9.9E-14 3.4E-18 130.8 11.4 111 569-702 11-121 (170)
136 1a9n_A U2A', U2A'; complex (nu 99.5 6.1E-14 2.1E-18 133.3 9.8 131 518-673 18-154 (176)
137 2r9u_A Variable lymphocyte rec 99.4 2.9E-13 1E-17 128.0 11.4 109 570-701 15-123 (174)
138 1ds9_A Outer arm dynein; leuci 99.4 3.6E-15 1.2E-19 144.8 -2.1 150 267-427 20-185 (198)
139 3g39_A Variable lymphocyte rec 99.4 8.3E-13 2.8E-17 124.4 10.4 108 613-723 11-119 (170)
140 2r9u_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 122.7 10.5 107 614-723 15-122 (174)
141 4fdw_A Leucine rich hypothetic 99.3 6.8E-11 2.3E-15 127.3 21.8 65 628-694 316-381 (401)
142 4fdw_A Leucine rich hypothetic 99.3 3.8E-11 1.3E-15 129.3 19.3 271 110-427 111-383 (401)
143 2ifg_A High affinity nerve gro 99.3 6.1E-12 2.1E-16 133.7 9.0 86 614-700 34-120 (347)
144 2ifg_A High affinity nerve gro 99.2 1.4E-11 4.9E-16 130.8 9.5 108 614-723 11-120 (347)
145 3un9_A NLR family member X1; l 99.2 3E-12 1E-16 136.6 2.0 50 284-333 206-260 (372)
146 4fs7_A Uncharacterized protein 99.2 3.5E-10 1.2E-14 122.2 18.2 310 105-446 64-374 (394)
147 4fs7_A Uncharacterized protein 99.2 8.7E-10 3E-14 119.1 21.1 127 538-691 248-374 (394)
148 3un9_A NLR family member X1; l 99.2 5.9E-12 2E-16 134.3 2.6 38 288-325 154-196 (372)
149 4gt6_A Cell surface protein; l 98.9 1.5E-07 5.2E-12 101.4 25.6 135 534-695 256-390 (394)
150 2ra8_A Uncharacterized protein 98.9 8.2E-10 2.8E-14 116.6 5.2 109 82-194 106-227 (362)
151 4gt6_A Cell surface protein; l 98.8 6.2E-08 2.1E-12 104.5 17.7 314 106-449 57-389 (394)
152 2ra8_A Uncharacterized protein 98.7 7.5E-08 2.6E-12 101.6 11.8 139 281-427 164-320 (362)
153 4h09_A Hypothetical leucine ri 98.5 2.2E-05 7.7E-10 83.8 24.3 50 267-319 48-98 (379)
154 4h09_A Hypothetical leucine ri 98.5 1.1E-05 3.7E-10 86.3 21.2 143 282-436 210-354 (379)
155 1io0_A Tropomodulin; LRR prote 98.4 2E-07 6.9E-12 88.6 4.9 46 282-327 29-80 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 2.4E-07 8.4E-12 88.0 5.4 59 267-325 95-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 3.8E-07 1.3E-11 91.1 4.9 66 633-700 168-237 (267)
158 3rw6_A Nuclear RNA export fact 98.3 2E-07 6.7E-12 93.2 1.8 74 614-689 173-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 3.3E-06 1.1E-10 78.0 3.3 84 138-223 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.7 1.7E-05 5.9E-10 73.2 4.3 85 160-250 60-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00041 1.4E-08 65.3 5.8 40 286-325 38-83 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00053 1.8E-08 64.5 5.8 41 184-224 39-82 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.00075 2.6E-08 59.3 5.9 61 638-700 11-72 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0069 2.4E-07 53.0 6.7 56 501-556 11-68 (130)
165 2lz0_A Uncharacterized protein 26.8 65 0.0022 25.9 4.1 47 530-577 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.3e-89 Score=805.76 Aligned_cols=654 Identities=30% Similarity=0.456 Sum_probs=502.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCcee---ccccccC
Q 047152 34 TRCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGK---ITPALLK 110 (776)
Q Consensus 34 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~---~~~~l~~ 110 (776)
..+.++|++||++||+++.||. .+++|+ .+.+||+|+||+|+ +|+|++|+|++ .++.|. +++++.+
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~-----~~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS-----KPLNVGFSAVSSSLLS 75 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT-----SCCCEEHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC-----CCcCCccCccChhHhc
Confidence 3457889999999999999998 899997 47799999999997 69999999999 678888 8888888
Q ss_pred CCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCc--cCCCCCCCCEEeccCCCCCCCCCchhhccCCCC
Q 047152 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPH--QLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSL 188 (776)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L 188 (776)
+++|+.++++.+.+. .+|..++++++|++|||++|.++|.+|. .++++++|++|++++|.+.+......+.++++|
T Consensus 76 L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 76 LTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp CTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred cCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 888888888888765 3567788888888888888888887887 788888888888888887652233334778888
Q ss_pred cEEEccCCCCCCcchhhHh---hcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCC
Q 047152 189 IYLYLDLNDLSNFSNWVQL---LSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSS 265 (776)
Q Consensus 189 ~~L~Ls~n~l~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~ 265 (776)
++|++++|.+++.. +.. +.++++|++|++++|.+.+..+. ..+ ++|++|++++|++.+.+|. +.++++
T Consensus 154 ~~L~Ls~n~l~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l---~~L~~L~Ls~n~l~~~~~~-l~~l~~- 224 (768)
T 3rgz_A 154 EVLDLSANSISGAN--VVGWVLSDGCGELKHLAISGNKISGDVDV--SRC---VNLEFLDVSSNNFSTGIPF-LGDCSA- 224 (768)
T ss_dssp SEEECCSSCCEEET--HHHHHHTTCCTTCCEEECCSSEEESCCBC--TTC---TTCCEEECCSSCCCSCCCB-CTTCCS-
T ss_pred CEEECCCCccCCcC--ChhhhhhccCCCCCEEECCCCcccccCCc--ccC---CcCCEEECcCCcCCCCCcc-cccCCC-
Confidence 88888888887642 333 67788888888888877766553 444 7788888888888776666 777777
Q ss_pred CcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhc-cCCCcCCC
Q 047152 266 LVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDL-SSGCTKNS 343 (776)
Q Consensus 266 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~~~~~~~ 343 (776)
|++|++++|++++.+|..++.+++|++|++++|.+++ +|.. .+++|++|++++|.+++.+|..+... + +
T Consensus 225 -L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~------~ 295 (768)
T 3rgz_A 225 -LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD------T 295 (768)
T ss_dssp -CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT------T
T ss_pred -CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC------c
Confidence 8888888888887778888888888888888887776 5443 67778888888887777777666554 4 7
Q ss_pred ccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhc-ccCCCCCcEEECCCccccccccHHhhhCCC-CCcEEE
Q 047152 344 LEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKS-IGQLFKLEMLKLNGNSLGGVISEALFSNLS-RLAALD 420 (776)
Q Consensus 344 L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~ 420 (776)
|++|++++|.+++.+|. ++.+++|++|++++|.+++.+|.. +..+++|++|++++|.+++.+|. .+.+++ +|++|+
T Consensus 296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLD 374 (768)
T ss_dssp CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEE
T ss_pred CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-HHHhhhcCCcEEE
Confidence 78888888877776665 777778888888888777766655 77777888888888877777776 455555 777777
Q ss_pred CCCCccceecCCCCCC--CCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccC
Q 047152 421 LADNSLTLEFSHDWIP--PFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDI 498 (776)
Q Consensus 421 Ls~n~l~~~~~~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~ 498 (776)
+++|++++..+..+.. ..+|++|++++|++++.+|.++... ++|++|++++|+++|.+|. .+....
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-----------~~L~~L~Ls~N~l~~~~p~-~l~~l~ 442 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-----------SELVSLHLSFNYLSGTIPS-SLGSLS 442 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-----------TTCCEEECCSSEEESCCCG-GGGGCT
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-----------CCCCEEECcCCcccCcccH-HHhcCC
Confidence 7777777777766655 6677777777777776666665543 3466666666666666665 444444
Q ss_pred CCCeEeccCCcccccCCCC---CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEecc
Q 047152 499 SGPGIDISSNHFEGPIPPL---PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLA 575 (776)
Q Consensus 499 ~l~~l~l~~n~l~g~~p~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 575 (776)
.++.+++++|.++|.+|.. +++|++|++++|++++.+|..+..+++|++|+|++|++++.+|.+++.+++|++|+++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence 4566666666666665553 4556666666666666666666666666666666666666666666666666666666
Q ss_pred CCcccccCCccccccCCCcEEecCCCccc---------------------------------------------------
Q 047152 576 NNNFFGKIPNSMGFLHNIRSLSLYNRSQY--------------------------------------------------- 604 (776)
Q Consensus 576 ~N~l~~~~p~~~~~l~~L~~L~l~~~~~~--------------------------------------------------- 604 (776)
+|+++|.+|..++.+++|++|+++++...
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 66666666666666666666666553221
Q ss_pred -----------------------ccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCC
Q 047152 605 -----------------------EYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSL 661 (776)
Q Consensus 605 -----------------------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 661 (776)
..+..+++|++|||++|+++|.+|.++++++.|+.|+|++|+++|.+|..++++++|
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L 682 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence 112345789999999999999999999999999999999999999999999999999
Q ss_pred CeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCCCCCCCCCCC
Q 047152 662 DFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKCPDED 732 (776)
Q Consensus 662 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~l~~~c~~~~ 732 (776)
++|||++|+++|.+|..+.++++|++||+++|+++|.||.++++.+|...+|.|||++||.|+. .|....
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999987 896543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.1e-67 Score=621.25 Aligned_cols=560 Identities=29% Similarity=0.368 Sum_probs=450.7
Q ss_pred ccccccCCCCCCEEeCCCCCCCCCCCCc--cccCCCCCCEEecCCCCCCCCCCccC-CCCCCCCEEeccCCCCCCCCCch
Q 047152 104 ITPALLKLQHLTYLDLSRNNFSGSSIPE--FLGSLGKLSYLGLSSAEFAGPIPHQL-GNLSRLQFLDLSFNNLFSGENLD 180 (776)
Q Consensus 104 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~ 180 (776)
++..++++++|++|||++|.+++. +|. .++++++|++|+|++|.+.+.+|..+ .++++|++|++++|++.+ ..+.
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~ 169 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG-ANVV 169 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEE-ETHH
T ss_pred CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCC-cCCh
Confidence 447788888888888888888874 777 78888888888888888888888766 788888888888888764 3333
Q ss_pred h---hccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchh
Q 047152 181 W---LSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYP 257 (776)
Q Consensus 181 ~---l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~ 257 (776)
. +.++++|++|++++|.+++... +.++++|++|++++|.+.+.+|. ++++ ++|++|++++|++++.+|.
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l---~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDC---SALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTC---CSCCEEECCSSCCCSCHHH
T ss_pred hhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccC---CCCCEEECcCCcCCCcccH
Confidence 3 6788888888888888876432 37788888888888888887776 6666 8888888888888888888
Q ss_pred hHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC-Cchhhccc-CCCcEEeccCCcCCCccchHHhhc
Q 047152 258 WLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNM-CGLKILYLSGKELKGQLSEFIQDL 335 (776)
Q Consensus 258 ~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l 335 (776)
.+.++++ |++|++++|++++.+|.. .+++|++|++++|.+++ +|..+... ++|++|++++|.+++.+|..+..+
T Consensus 242 ~l~~l~~--L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 242 AISTCTE--LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp HTTTCSS--CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred HHhcCCC--CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 8888888 888888888888777765 77888888888888885 77777664 888888888888888888888887
Q ss_pred cCCCcCCCccEEEcccccccccCCC--ccCCCCCCEEeccCccccccchhcccCCC-CCcEEECCCccccccccHHhhhC
Q 047152 336 SSGCTKNSLEWLHLSSNEITGSMPN--LGEFSSLKQLNLENNLLNGTIHKSIGQLF-KLEMLKLNGNSLGGVISEALFSN 412 (776)
Q Consensus 336 ~~~~~~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~ 412 (776)
+ +|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|. .+..
T Consensus 318 ~------~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~ 390 (768)
T 3rgz_A 318 S------LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQ 390 (768)
T ss_dssp T------TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTC
T ss_pred C------CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhh
Confidence 7 788888888888876664 77888888888888888888888887776 788888888888877776 3444
Q ss_pred --CCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCC
Q 047152 413 --LSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVP 490 (776)
Q Consensus 413 --l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p 490 (776)
+++|++|++++|++++..|..+..+++|++|++++|++++.+|..+... ++|++|++++|.++|.+|
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----------~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-----------SKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC-----------TTCCEEECCSSCCCSCCC
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC-----------CCCCEEECCCCcccCcCC
Confidence 6778888888888888888888888888888888888877777665543 457788888888887777
Q ss_pred cccccccCCCCeEeccCCcccccCCCC---CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCC
Q 047152 491 DLSLRFDISGPGIDISSNHFEGPIPPL---PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFD 567 (776)
Q Consensus 491 ~~~~~~~~~l~~l~l~~n~l~g~~p~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 567 (776)
. .+.....++.+++++|+++|.+|.. +++|++|++++|++++.+|..+..+++|++|+|++|+++|.+|..+.+++
T Consensus 460 ~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 460 Q-ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp G-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred H-HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 7 5555555678888888888777764 56778888888888877787777788888888888888888888888888
Q ss_pred CCcEEeccCCcccccCCcc-------------------------------------------------------------
Q 047152 568 SLVILNLANNNFFGKIPNS------------------------------------------------------------- 586 (776)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~------------------------------------------------------------- 586 (776)
+|++|++++|+++|.+|..
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 8888888888777766654
Q ss_pred ---------ccccCCCcEEecCCCcc----cccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcc
Q 047152 587 ---------MGFLHNIRSLSLYNRSQ----YEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITP 653 (776)
Q Consensus 587 ---------~~~l~~L~~L~l~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 653 (776)
++.+++|++|+++++.+ +..++.++.|+.|+|++|+++|.+|..++++++|++|||++|+++|.+|.
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 44467889999998654 45567889999999999999999999999999999999999999999999
Q ss_pred cccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCccee
Q 047152 654 KIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG 697 (776)
Q Consensus 654 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 697 (776)
.++.+++|++||+++|+++|.+|.. ..+.++....+.+|+--|
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred HHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence 9999999999999999999999975 345667777888897544
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.1e-60 Score=554.67 Aligned_cols=573 Identities=21% Similarity=0.203 Sum_probs=465.1
Q ss_pred ccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhc
Q 047152 104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLS 183 (776)
Q Consensus 104 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~ 183 (776)
+|..+. +++++|+|++|.+++. .+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+.. .....|+
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~ 94 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFA 94 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred cccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhc
Confidence 454443 7899999999999875 56679999999999999999998888889999999999999999874 3444689
Q ss_pred cCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhc-
Q 047152 184 HLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNV- 262 (776)
Q Consensus 184 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~- 262 (776)
++++|++|++++|.+++++ +..++++++|++|++++|.+++..+..+.++ ++|++|++++|.+++..+..+...
T Consensus 95 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTKLGTQVQL---ENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TCTTCSEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCCCCSSSCC---TTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred cCCCCCEEECCCCccCccC--hhHccccCCCCEEECCCCcccccCchhhccc---ccCCEEEccCCcccccCHHHhhccc
Confidence 9999999999999998753 3568899999999999999999888888877 899999999999998877776544
Q ss_pred -CCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC-Cchhh---cccCCCcEEeccCCcCCCccchHHhhccC
Q 047152 263 -SSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFL---GNMCGLKILYLSGKELKGQLSEFIQDLSS 337 (776)
Q Consensus 263 -~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 337 (776)
++ |+.|++++|++++..|..+..+++|+.|+++++.+.. ....+ ...++|++|++++|.+++..+..+..+..
T Consensus 170 ~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 170 NSS--LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247 (680)
T ss_dssp TCE--ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred ccc--ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc
Confidence 56 9999999999999999999999999999999988765 21111 13478999999999999998888887751
Q ss_pred CCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccc--------cHH
Q 047152 338 GCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVI--------SEA 408 (776)
Q Consensus 338 ~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~--------~~~ 408 (776)
++|++|++++|++++..+. ++.+++|++|++++|.+++..|..+..+++|++|++++|...+.+ +..
T Consensus 248 ----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 248 ----TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp ----SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ----CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 1499999999999988766 889999999999999999988999999999999999988654322 222
Q ss_pred hhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhh--ccCcccEEEcccccCc
Q 047152 409 LFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWD--LTHQRMLLNLSSNQMR 486 (776)
Q Consensus 409 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~--~~~~L~~L~l~~n~l~ 486 (776)
.|..+++|++|++++|.+++..+..+..+++|+++++++|.+..... +...+. ..++++.|++++|+++
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l---------~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL---------TNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE---------CTTTTGGGTTSCCCEEECTTSCCC
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc---------chhhhcccccCcCceEECCCCCCC
Confidence 57789999999999999999888889999999999999998643221 111111 1247999999999999
Q ss_pred ccCCcccccccCCCCeEeccCCcccccCCC----CCCCCcEEEccCCccccCCCccccCCCCccEEECcCCccc--ccCC
Q 047152 487 GKVPDLSLRFDISGPGIDISSNHFEGPIPP----LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLS--GKLP 560 (776)
Q Consensus 487 g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p 560 (776)
+..|. .+.....++.+++++|.+++.+|. .+++|++|++++|++++..+..+..+++|++|++++|.++ +.+|
T Consensus 395 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 395 KIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp EECTT-TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred eEChh-hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence 88776 566666679999999999887764 3678999999999999988888999999999999999987 5788
Q ss_pred hhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccc------------ccccccccEEEccCCCCccCCc
Q 047152 561 DCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEY------------KSTLGLVKILDLSSNKLGGGVP 628 (776)
Q Consensus 561 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~------------~~~l~~L~~L~Ls~N~l~~~~p 628 (776)
..+.++++|++|++++|++++..|..+..+++|++|+++++.+... +..+++|++|+|++|+++...+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 8899999999999999999988888899999998888877665433 3556777788888887774444
Q ss_pred hhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCc-CCCCCCeeeCCCCcceecCCC
Q 047152 629 KEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLS-QLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 629 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~iP~ 701 (776)
..|+++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+. .+++|+.|++++|++.|.++.
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 4577777888888888888765555567777888888888888777666665 567777888888888777764
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-57 Score=533.74 Aligned_cols=583 Identities=20% Similarity=0.184 Sum_probs=495.5
Q ss_pred CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEcc
Q 047152 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD 194 (776)
Q Consensus 115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls 194 (776)
+.+|.+++.++ .+|..+. +++++|++++|.+++..+..|+++++|++|++++|.+.. ..+..++++++|++|+++
T Consensus 7 ~~~~cs~~~L~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 7 EVADCSHLKLT--QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SEEECCSSCCS--SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECC
T ss_pred CeeECCCCCcc--ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECC
Confidence 56888888887 4787665 799999999999998777889999999999999999976 567789999999999999
Q ss_pred CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152 195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS 274 (776)
Q Consensus 195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~ 274 (776)
+|.++.++ +..++++++|++|++++|++.+..+..++++ ++|++|++++|.+++..+..+.++++ |++|++++
T Consensus 82 ~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~ 154 (680)
T 1ziw_A 82 HNELSQLS--DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ---KNLITLDLSHNGLSSTKLGTQVQLEN--LQELLLSN 154 (680)
T ss_dssp SSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCSCTTTTC---TTCCEEECCSSCCSCCCCCSSSCCTT--CCEEECCS
T ss_pred CCccCccC--hhhhccCCCCCEEECCCCccCccChhHcccc---CCCCEEECCCCcccccCchhhccccc--CCEEEccC
Confidence 99999854 2468999999999999999999888889888 99999999999999988888889999 99999999
Q ss_pred CccccCcchhhc--CCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc
Q 047152 275 NQLQGSIPEAFG--RMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS 351 (776)
Q Consensus 275 n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~ 351 (776)
|.+++..+..+. .+++|++|++++|.+++ .|..+..+.+|+.++++++.+.+.....+.... ...+|++|++++
T Consensus 155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l---~~~~L~~L~L~~ 231 (680)
T 1ziw_A 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL---ANTSIRNLSLSN 231 (680)
T ss_dssp SCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH---TTSCCCEEECTT
T ss_pred CcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh---hhccccEEEccC
Confidence 999988887765 56899999999999999 667899999999999999988754333322110 112899999999
Q ss_pred ccccccCCC-ccCCCC--CCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce
Q 047152 352 NEITGSMPN-LGEFSS--LKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL 428 (776)
Q Consensus 352 n~l~~~~~~-l~~l~~--L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 428 (776)
|.+++..|. +..++. |++|++++|.+++..|..+..+++|++|++++|.+++..|. .|.++++|++|++++|...+
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhc
Confidence 999988776 766654 99999999999988889999999999999999999987776 68999999999999876543
Q ss_pred e---------cCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCccc-CCcccccc--
Q 047152 429 E---------FSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGK-VPDLSLRF-- 496 (776)
Q Consensus 429 ~---------~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~-~p~~~~~~-- 496 (776)
. ....+..+++|+++++++|++.+..|..+.. +++|++|++++|.+.+. ++...+..
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------l~~L~~L~Ls~n~~~~~~l~~~~f~~~~ 379 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-----------LINLKYLSLSNSFTSLRTLTNETFVSLA 379 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT-----------CTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcc-----------ccCCcEEECCCCchhhhhcchhhhcccc
Confidence 2 2236778899999999999998765554443 46799999999987543 22212221
Q ss_pred cCCCCeEeccCCcccccCCCC---CCCCcEEEccCCccccCCC-ccccCCCCccEEECcCCcccccCChhhhCCCCCcEE
Q 047152 497 DISGPGIDISSNHFEGPIPPL---PSNATSLNLSKNKFSGSIS-FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVIL 572 (776)
Q Consensus 497 ~~~l~~l~l~~n~l~g~~p~~---~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 572 (776)
...++.+++++|++++..|.. +++|++|++++|++++.++ ..+..+++|++|++++|++++..+..|..+++|+.|
T Consensus 380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 134699999999999987765 6789999999999998665 688899999999999999999889999999999999
Q ss_pred eccCCccc--ccCCccccccCCCcEEecCCCccccc----ccccccccEEEccCCCCccCCc--------hhhhccccCC
Q 047152 573 NLANNNFF--GKIPNSMGFLHNIRSLSLYNRSQYEY----KSTLGLVKILDLSSNKLGGGVP--------KEIMDLVGLV 638 (776)
Q Consensus 573 ~Ls~N~l~--~~~p~~~~~l~~L~~L~l~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~ 638 (776)
++++|.+. +.+|..+..+++|++|+++++.+... +..+++|++|++++|++++..+ ..++++++|+
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 99999987 67899999999999999999876544 4568999999999999986422 2478999999
Q ss_pred EEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-C-cccccccccccCC
Q 047152 639 ALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-T-QLQSFNELVYAGN 716 (776)
Q Consensus 639 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~-~~~~~~~~~~~gN 716 (776)
+|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..|.. . .+.++..+.+.||
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence 9999999999544456899999999999999999777777899999999999999999876643 2 4678888999999
Q ss_pred CCCCCCCC
Q 047152 717 PELCGLPL 724 (776)
Q Consensus 717 ~~lc~~~l 724 (776)
|+.|+|+.
T Consensus 620 ~~~c~c~~ 627 (680)
T 1ziw_A 620 PFDCTCES 627 (680)
T ss_dssp CCCBCCCC
T ss_pred CcccCCcc
Confidence 99999874
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-55 Score=523.88 Aligned_cols=551 Identities=25% Similarity=0.249 Sum_probs=366.9
Q ss_pred CCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCC-CccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCc
Q 047152 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPI-PHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI 189 (776)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 189 (776)
.++|++|||++|.+++. .|..|.++++|++|+|++|...+.+ |..|+++++|++|+|++|.+.. ..+..|+++++|+
T Consensus 23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLF 100 (844)
T ss_dssp CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTSSCSCSSCC
T ss_pred CCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhHccCCcccC
Confidence 35666666666666654 5566666666666666666555444 5566666666666666666653 3455666666666
Q ss_pred EEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCc-hhhhcCCCCCCccEEEcCCCCCCCCchhhHhhc--CCCC
Q 047152 190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP-SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNV--SSSL 266 (776)
Q Consensus 190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~--~~~~ 266 (776)
+|+|++|.+++.......++++++|++|++++|.+.+..+ ..++++ ++|++|++++|.+++..+..+..+ ++
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L---~~L~~L~Ls~N~i~~~~~~~l~~l~~~~-- 175 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL---NSLKSIDFSSNQIFLVCEHELEPLQGKT-- 175 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC---SSCCEEEEESSCCCCCCSGGGHHHHHCS--
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC---CCCCEEECCCCcCCeeCHHHcccccCCc--
Confidence 6666666666521111236667777777777777666544 456666 677777777777777666666665 45
Q ss_pred cCEEEccCCccccCcchhhcCCCC------CCEEEccCCCCCC-Cchhhcc---cCCCcEEeccCC---------cCCCc
Q 047152 267 VDRISLPSNQLQGSIPEAFGRMVS------LRYLDLSSNELRG-IPKFLGN---MCGLKILYLSGK---------ELKGQ 327 (776)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~-ip~~l~~---l~~L~~L~Ls~n---------~l~~~ 327 (776)
|+.|+++.|.+.+..|..++.+.+ |++|++++|.+++ +|..+.. ..+++.+.++.+ .+.+.
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 777777777777766666655554 7777777777766 5544433 245666666532 22223
Q ss_pred cchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCcccccccc
Q 047152 328 LSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVIS 406 (776)
Q Consensus 328 ~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 406 (776)
....+..+. ..+|++|++++|.+.+..+. +..+++|+.|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus 256 ~~~~f~~l~----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 256 DQNTFAGLA----RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp GGTTTTTTT----TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred Chhhhhccc----cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 333333321 12677777777777766555 6677777777777777776667777777777777777777765555
Q ss_pred HHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCc
Q 047152 407 EALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMR 486 (776)
Q Consensus 407 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~ 486 (776)
. .|..+++|++|++++|++....+..+..+++|++|++++|.+++. +. .++++
T Consensus 332 ~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~---------------~~~L~---------- 384 (844)
T 3j0a_A 332 S-NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF---------------IPSIP---------- 384 (844)
T ss_dssp C-SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS---------------CCSCS----------
T ss_pred H-HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC---------------CCCcc----------
Confidence 4 567777777777777777666655666666666666666655421 10 22344
Q ss_pred ccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCC-ccccCCCCccEEECcCCcccccCCh-hhh
Q 047152 487 GKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSIS-FLCSLSNRLIYLDLSNNLLSGKLPD-CWF 564 (776)
Q Consensus 487 g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~ 564 (776)
.+++++|+++ .+|....+++.|++++|++++... ..+..+++|++|+|++|++++..+. .+.
T Consensus 385 ---------------~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 448 (844)
T 3j0a_A 385 ---------------DIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448 (844)
T ss_dssp ---------------EEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred ---------------hhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence 4444444444 344445678888888888887543 2345688899999999998865443 355
Q ss_pred CCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcC
Q 047152 565 QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSR 644 (776)
Q Consensus 565 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 644 (776)
.+++|+.|++++|.+++..+..+ ....+..+++|++|+|++|++++.+|..|.++++|+.|+|++
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 513 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETEL---------------CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCC---------------CSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred cCCccccccCCCCcccccccccc---------------chhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence 67889999999998873332111 011123344558899999999999999999999999999999
Q ss_pred CcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCCC
Q 047152 645 NNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPL 724 (776)
Q Consensus 645 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~l 724 (776)
|++++..|..+. ++|+.|||++|++++.+|..+. +|+.|++++|++.|.++.. .|......+|..+||.+.
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~ 584 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPA 584 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGG
T ss_pred CCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccc
Confidence 999976666655 8999999999999999998764 7899999999999988753 233223356777888887
Q ss_pred CCCCCCCCCCCCCCC
Q 047152 725 RNKCPDEDSAPSPER 739 (776)
Q Consensus 725 ~~~c~~~~~~~~~~~ 739 (776)
...|..++...+...
T Consensus 585 ~~~C~~p~~~~g~~l 599 (844)
T 3j0a_A 585 DIYCVYPDSFSGVSL 599 (844)
T ss_dssp GCCCSSCSSSCSCCT
T ss_pred cCccCCchhhCCCcc
Confidence 788987766554433
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.6e-55 Score=506.55 Aligned_cols=518 Identities=21% Similarity=0.198 Sum_probs=391.1
Q ss_pred CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEE
Q 047152 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY 192 (776)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 192 (776)
++++|++++|.+++. .|..|+++++|++|+|++|++.+..|..|+++++|++|++++|++.. ..+..++++++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE-ECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc-cChhhhcccccccEee
Confidence 678888888888865 57788888888888888888887778888888888888888888864 4566788888888888
Q ss_pred ccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcC--EE
Q 047152 193 LDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD--RI 270 (776)
Q Consensus 193 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~--~L 270 (776)
+++|.+++.. +..++++++|++|++++|++.+.....+..+ ++|++|++++|.+++..+..+..+++ ++ .|
T Consensus 112 L~~n~i~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~l~L 184 (606)
T 3t6q_A 112 FIQTGISSID--FIPLHNQKTLESLYLGSNHISSIKLPKGFPT---EKLKVLDFQNNAIHYLSKEDMSSLQQ--ATNLSL 184 (606)
T ss_dssp CTTSCCSCGG--GSCCTTCTTCCEEECCSSCCCCCCCCTTCCC---TTCCEEECCSSCCCEECHHHHHTTTT--CCSEEE
T ss_pred ccccCcccCC--cchhccCCcccEEECCCCcccccCcccccCC---cccCEEEcccCcccccChhhhhhhcc--cceeEE
Confidence 8888888753 3457888888999998888887554444445 88889999988888877888888888 77 88
Q ss_pred EccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCC-----CccchHHhhccCCCcCCCcc
Q 047152 271 SLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELK-----GQLSEFIQDLSSGCTKNSLE 345 (776)
Q Consensus 271 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~~~~~~~L~ 345 (776)
++++|.+++..|..+.. .+|++|++++|. .++..+..+.+++...+....+. ...+..+..+.. .+|+
T Consensus 185 ~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~----~~L~ 257 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE----MSVE 257 (606)
T ss_dssp ECTTCCCCEECTTTTTT-CEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG----SEEE
T ss_pred ecCCCccCccChhHhhh-ccccccccCCch--hHHHHhhhccccchhheechhhccccccccChhHhchhhc----Ccee
Confidence 88888888877766654 678888888875 45555555555544443332221 122233333321 1588
Q ss_pred EEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCC
Q 047152 346 WLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADN 424 (776)
Q Consensus 346 ~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 424 (776)
+|++++|.+++..+. +..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|. .+..+++|++|++++|
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSC
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh-hhhccCcCCEEECCCC
Confidence 888888888877766 888888888888888888 6777888888888888888888766554 6788888888888888
Q ss_pred ccceecCCC-CCCCCCCcEEEccCcCCCCCC--chhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCC
Q 047152 425 SLTLEFSHD-WIPPFQLNTISLGHCKMGPRF--PKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGP 501 (776)
Q Consensus 425 ~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~ 501 (776)
.+.+.++.. +..+++|++|++++|.+.+.. |..+. .+++|++|++++|.+.+..|. .+.
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----------~l~~L~~L~l~~n~l~~~~~~-~~~------ 397 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR-----------NLSHLQSLNLSYNEPLSLKTE-AFK------ 397 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT-----------TCTTCCEEECCSCSCEEECTT-TTT------
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcc-----------cCCCCCEEECCCCcCCcCCHH-Hhc------
Confidence 887666544 777888888888888875432 22221 233455566555555543332 111
Q ss_pred eEeccCCcccccCCCCCCCCcEEEccCCccccCCCc-cccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152 502 GIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISF-LCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF 580 (776)
Q Consensus 502 ~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (776)
.+++|++|++++|++++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++.
T Consensus 398 ---------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 398 ---------------ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp ---------------TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred ---------------CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 135677777777777766543 3667777888888888877777777777778888888888776
Q ss_pred cc---CCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccC
Q 047152 581 GK---IPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQ 657 (776)
Q Consensus 581 ~~---~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 657 (776)
+. .+..+..++ +|++|++++|++++..|..|+++++|++|+|++|++++.+|..+.+
T Consensus 463 ~~~~~~~~~~~~l~--------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 463 KGNIQKTNSLQTLG--------------------RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp GGEECSSCGGGGCT--------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred ccccccchhhccCC--------------------CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc
Confidence 52 223344444 4488999999999988999999999999999999999999999999
Q ss_pred cCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC
Q 047152 658 LKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG 702 (776)
Q Consensus 658 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 702 (776)
+++| +|++++|++++.+|..+..+++|++|++++|++.|.++..
T Consensus 523 l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp CCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred cccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 9999 9999999999988988999999999999999999988743
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-53 Score=493.58 Aligned_cols=532 Identities=20% Similarity=0.176 Sum_probs=412.9
Q ss_pred EEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccC
Q 047152 116 YLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDL 195 (776)
Q Consensus 116 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~ 195 (776)
+++.++..++ .+|..+. +++++|++++|.+++..|..|+++++|++|++++|++.. ..+..|+++++|++|++++
T Consensus 16 ~~~c~~~~l~--~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 16 TYNCENLGLN--EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp EEECTTSCCS--SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTT
T ss_pred eEECCCCCcc--cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCC
Confidence 3455555555 4676665 479999999999998889999999999999999999875 5677899999999999999
Q ss_pred CCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCC
Q 047152 196 NDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSN 275 (776)
Q Consensus 196 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n 275 (776)
|.+++. .+..++++++|++|++++|.+++..+..+.++ ++|++|++++|++.+..++.+..+++ |++|++++|
T Consensus 91 n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n 163 (606)
T 3t6q_A 91 NPLIFM--AETALSGPKALKHLFFIQTGISSIDFIPLHNQ---KTLESLYLGSNHISSIKLPKGFPTEK--LKVLDFQNN 163 (606)
T ss_dssp CCCSEE--CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTC---TTCCEEECCSSCCCCCCCCTTCCCTT--CCEEECCSS
T ss_pred Cccccc--ChhhhcccccccEeeccccCcccCCcchhccC---CcccEEECCCCcccccCcccccCCcc--cCEEEcccC
Confidence 999874 35789999999999999999999878888888 99999999999999855444555778 999999999
Q ss_pred ccccCcchhhcCCCCCC--EEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccc
Q 047152 276 QLQGSIPEAFGRMVSLR--YLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE 353 (776)
Q Consensus 276 ~l~~~~p~~l~~l~~L~--~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~ 353 (776)
.+++..|..++.+++|+ +|++++|.+++++.......+|++|++++|. ..+..+..+. .++...+....
T Consensus 164 ~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~------~~~l~~l~~~~ 234 (606)
T 3t6q_A 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLK------NSTIQSLWLGT 234 (606)
T ss_dssp CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTT------TCEEEEEECCC
T ss_pred cccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhhhcc------ccchhheechh
Confidence 99988899999999999 8999999999965555556789999999987 4555666655 44333333222
Q ss_pred cccc----C-CC-ccCCC--CCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCc
Q 047152 354 ITGS----M-PN-LGEFS--SLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNS 425 (776)
Q Consensus 354 l~~~----~-~~-l~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 425 (776)
+.+. + +. +..+. +|+.|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|+
T Consensus 235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS-GLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS-SCCSCTTCCEEECTTCC
T ss_pred hccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh-hhcccccCCEEECccCC
Confidence 2211 0 11 22222 6778888888887777777777888888888888776 4555 46777788888888887
Q ss_pred cceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccC--CcccccccCCCCeE
Q 047152 426 LTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKV--PDLSLRFDISGPGI 503 (776)
Q Consensus 426 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~--p~~~~~~~~~l~~l 503 (776)
+++..+..+..+++|++|++++|.+.+.+|.. .+..+++|++|++++|.+++.. |.
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~------------ 370 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTG----------CLENLENLRELDLSHDDIETSDCCNL------------ 370 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS----------TTTTCTTCCEEECCSSCCCEEEESTT------------
T ss_pred cCcCchhhhhccCcCCEEECCCCCcccccchh----------hhhccCcCCEEECCCCccccccCcch------------
Confidence 77666666666666666666666655443321 1112334555555555554321 11
Q ss_pred eccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChh-hhCCCCCcEEeccCCccccc
Q 047152 504 DISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDC-WFQFDSLVILNLANNNFFGK 582 (776)
Q Consensus 504 ~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~ 582 (776)
....+++|++|++++|++++..+..+..+++|++|++++|++++..+.. +..+++|++|++++|.+.+.
T Consensus 371 ----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 440 (606)
T 3t6q_A 371 ----------QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440 (606)
T ss_dssp ----------TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred ----------hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence 0112567888888888888888888888888888888888888766544 77888888888888888887
Q ss_pred CCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccC---CchhhhccccCCEEECcCCcccCcCcccccCcC
Q 047152 583 IPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGG---VPKEIMDLVGLVALNLSRNNLTGQITPKIGQLK 659 (776)
Q Consensus 583 ~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 659 (776)
.|..+..+++| ++|++++|++++. .+..++.+++|++|++++|++++.+|..++.++
T Consensus 441 ~~~~~~~l~~L--------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 441 SEQLFDGLPAL--------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp CTTTTTTCTTC--------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CHHHHhCCCCC--------------------CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence 78777777666 7889999999873 346799999999999999999998899999999
Q ss_pred CCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-CcccccccccccCCCCCCCCC
Q 047152 660 SLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 660 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~ 723 (776)
+|++|+|++|++++.+|..+.+++.| +|++++|++++..|.. ..+..+..+.+.|||+.|+|+
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999999999 9999999999877754 456778889999999999886
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-55 Score=506.58 Aligned_cols=510 Identities=18% Similarity=0.237 Sum_probs=303.1
Q ss_pred CCHHHHHHHHHHHhcCCCCC--------CCCCCCCCCCCCCCCCCc---cceeeCCCCCcEEEEECCCCCCCCCCCceec
Q 047152 36 CIDEEREALLTFKASLVDES--------GILSSWRREDEKRDCCKW---TGVGCSKRTGHVNKLDLQPIGFDSFPLRGKI 104 (776)
Q Consensus 36 ~~~~~~~~ll~~k~~~~~~~--------~~~~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~ 104 (776)
....|+.||.++++++.++. ...++|+ .+.+||.| .||+|+.. |||++|+|++ .++.|.+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~-----~~l~g~l 97 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG-----FGASGRV 97 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT-----SCCEEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC-----cccCCcC
Confidence 44579999999999986442 1234798 47899999 99999754 8999999999 7899999
Q ss_pred cccccCCCCCCEEeCCCCCCC------C-----CCCCccccCCCCCCEEecCCCCCCCCCCccCCC-CCCCCEEeccCCC
Q 047152 105 TPALLKLQHLTYLDLSRNNFS------G-----SSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGN-LSRLQFLDLSFNN 172 (776)
Q Consensus 105 ~~~l~~l~~L~~L~Ls~n~l~------~-----~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~ 172 (776)
|++++++++|++|+|++|.+. + ..+|... +.+|+ +++++|.+.+.+|..+.. +..+..+++....
T Consensus 98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~ 174 (636)
T 4eco_A 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174 (636)
T ss_dssp CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred ChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence 999999999999999999762 1 0144433 45677 888888888888877662 2223333332221
Q ss_pred CCCCCCchhhccCCCCcEEEcc--CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCC-----------------Cchhhh
Q 047152 173 LFSGENLDWLSHLSSLIYLYLD--LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI-----------------IPSSLL 233 (776)
Q Consensus 173 ~~~~~~~~~l~~l~~L~~L~Ls--~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~ 233 (776)
+.. .....++.+.+. .|++++ +|..++++++|++|+|++|.+++. +|..++
T Consensus 175 ~~~-------~~~~~l~~l~l~~~~n~l~~---ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 175 IKK-------SSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244 (636)
T ss_dssp CCC-------CCCCCCCTTTTTCCSCEEEE---ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred ccc-------ccccchhhhhhccccCCCcc---CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence 110 001111111111 233333 334455555555555555555553 455544
Q ss_pred --cCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCc-ccc-CcchhhcCC------CCCCEEEccCCCCCC
Q 047152 234 --NLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQ-LQG-SIPEAFGRM------VSLRYLDLSSNELRG 303 (776)
Q Consensus 234 --~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~ 303 (776)
++ ++|++|++++|++.+.+|..++++++ |++|++++|+ +++ .+|..++.+ ++|++|++++|+++.
T Consensus 245 ~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 245 WDNL---KDLTDVEVYNCPNLTKLPTFLKALPE--MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp GGGC---TTCCEEEEECCTTCSSCCTTTTTCSS--CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred hccc---CCCCEEEecCCcCCccChHHHhcCCC--CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 55 55555555555555555555555555 5666666655 555 555555544 566666666666666
Q ss_pred Cch--hhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCC-CCEEeccCcccccc
Q 047152 304 IPK--FLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSS-LKQLNLENNLLNGT 380 (776)
Q Consensus 304 ip~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~-L~~L~Ls~n~l~~~ 380 (776)
+|. .++++++|++|++++|.++|.+| .+..++ +|++|++++|+++..+..+..+++ |++|++++|.++ .
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~------~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI------KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE------EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC------CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-c
Confidence 665 56666666666666666665555 555555 666666666666633333666666 666666666666 5
Q ss_pred chhcccCCC--CCcEEECCCccccccccHHhhh-------CCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCC
Q 047152 381 IHKSIGQLF--KLEMLKLNGNSLGGVISEALFS-------NLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMG 451 (776)
Q Consensus 381 ~~~~l~~l~--~L~~L~L~~N~l~~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 451 (776)
+|..+..++ +|++|++++|.+++.+|. .+. .+++|++|++++|+++.
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N~l~~----------------------- 447 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLSNNQISK----------------------- 447 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECCSSCCCS-----------------------
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchh-hhcccccccccCCCCCEEECcCCccCc-----------------------
Confidence 555555443 666666666666665554 344 44555555555555441
Q ss_pred CCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCcc
Q 047152 452 PRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKF 531 (776)
Q Consensus 452 ~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l 531 (776)
+|..++..+++|++|++++|+++ .+|...+. +
T Consensus 448 ------------lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~----------------~------------------- 479 (636)
T 4eco_A 448 ------------FPKELFSTGSPLSSINLMGNMLT-EIPKNSLK----------------D------------------- 479 (636)
T ss_dssp ------------CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE----------------E-------------------
T ss_pred ------------CCHHHHccCCCCCEEECCCCCCC-CcCHHHhc----------------c-------------------
Confidence 11122222223334444444333 22220000 0
Q ss_pred ccCCCccccCCCCccEEECcCCcccccCChhhh--CCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccc
Q 047152 532 SGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF--QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKST 609 (776)
Q Consensus 532 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~ 609 (776)
....+..+++|++|+|++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|
T Consensus 480 ---~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L---------------- 538 (636)
T 4eco_A 480 ---ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL---------------- 538 (636)
T ss_dssp ---TTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC----------------
T ss_pred ---ccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC----------------
Confidence 0001122346777777777777 5666665 67777777777777765 66666666655
Q ss_pred cccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeee
Q 047152 610 LGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMD 689 (776)
Q Consensus 610 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 689 (776)
++|+|++|+ ++++|++.+.+|..++.+++|++|+|++|++ +.+|..+. ++|++|+
T Consensus 539 ----~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~ 593 (636)
T 4eco_A 539 ----KGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLD 593 (636)
T ss_dssp ----CEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEE
T ss_pred ----CEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEE
Confidence 344554443 3456666767777777777777777777777 46666654 6777777
Q ss_pred CCCCcceec
Q 047152 690 LSYNNLSGK 698 (776)
Q Consensus 690 ls~N~l~g~ 698 (776)
+++|++.+.
T Consensus 594 Ls~N~l~~~ 602 (636)
T 4eco_A 594 IKDNPNISI 602 (636)
T ss_dssp CCSCTTCEE
T ss_pred CcCCCCccc
Confidence 777777643
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.4e-53 Score=490.09 Aligned_cols=533 Identities=20% Similarity=0.182 Sum_probs=423.6
Q ss_pred EEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEE
Q 047152 87 KLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFL 166 (776)
Q Consensus 87 ~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 166 (776)
.++.++ .++. .+|..+. +++++|+|++|.+++. .+..|.++++|++|++++|++++..|..|+++++|++|
T Consensus 15 ~~~c~~-----~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 15 TYQCMD-----QKLS-KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp EEECTT-----SCCS-SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ceEccC-----CCcc-cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence 567777 4444 4555443 7899999999999975 66789999999999999999998888999999999999
Q ss_pred eccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCC-CCchhhhcCCCCCCccEEE
Q 047152 167 DLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP-IIPSSLLNLNSSNSLEVID 245 (776)
Q Consensus 167 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~~L~~L~ 245 (776)
++++|.+.. ..+..|+++++|++|++++|.+++.+. ..++++++|++|++++|.+.+ .+|..++++ ++|++|+
T Consensus 86 ~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l---~~L~~L~ 159 (606)
T 3vq2_A 86 ILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPAYFSNL---TNLVHVD 159 (606)
T ss_dssp ECTTCCCCC-CCTTSSTTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCCCCCGGGGTC---TTCCEEE
T ss_pred ECCCCcccc-cChhhcCCcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCcccceechHhHhhc---CCCCEEE
Confidence 999999975 557789999999999999999988642 458999999999999999987 569999998 9999999
Q ss_pred cCCCCCCCCchhhHhhcCCCC--cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC--CchhhcccCCCcEEeccC
Q 047152 246 LTENNLTNSVYPWLFNVSSSL--VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG--IPKFLGNMCGLKILYLSG 321 (776)
Q Consensus 246 Ls~n~l~~~~~~~l~~~~~~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--ip~~l~~l~~L~~L~Ls~ 321 (776)
+++|++++..+..+..+.+.. ++.+++++|.+++..+..+... +|++|++++|.+++ +|..+.++++|+.+++..
T Consensus 160 Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp CCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred ccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 999999988888787776611 3489999999997766666555 89999999999985 788899999999988865
Q ss_pred CcCCC------ccchHHhhccCCCcCCCccEEEc-ccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEE
Q 047152 322 KELKG------QLSEFIQDLSSGCTKNSLEWLHL-SSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEML 394 (776)
Q Consensus 322 n~l~~------~~~~~~~~l~~~~~~~~L~~L~L-~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 394 (776)
+.+.+ ..+..+..+.. -.++.+++ ..|.+.+..|.+..+++|+.|++++|.+. .+| .+..+++|++|
T Consensus 239 ~~~~~~~~l~~~~~~~~~~l~~----l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L 312 (606)
T 3vq2_A 239 GEFKDERNLEIFEPSIMEGLCD----VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSL 312 (606)
T ss_dssp ECCTTSCCCSCCCGGGGTTGGG----SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEE
T ss_pred cccccCCcccccChHHhhhhhh----ccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEE
Confidence 54432 22222333321 14777777 77788888888888999999999999987 455 78888899999
Q ss_pred ECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCC--CchhhhccCCCCchhhhcc
Q 047152 395 KLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPR--FPKWLQTQNTVPNWFWDLT 472 (776)
Q Consensus 395 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~p~~~~~~~~~p~~~~~~~ 472 (776)
++++|.+ +.+|. + .+++|++|++++|+..+.. .+..+++|+++++++|++++. +|..+. .+
T Consensus 313 ~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-----------~~ 375 (606)
T 3vq2_A 313 SIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL-----------GT 375 (606)
T ss_dssp EEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH-----------CC
T ss_pred EcccccC-ccccc--C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhc-----------cC
Confidence 9999998 67774 4 8889999999998655443 455666777777777765432 122222 23
Q ss_pred CcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCC-ccccCCCCccEEECc
Q 047152 473 HQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSIS-FLCSLSNRLIYLDLS 551 (776)
Q Consensus 473 ~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls 551 (776)
++|++|++++|.+++ +|. . ...+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus 376 ~~L~~L~L~~n~l~~-~~~-~---------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MSA-N---------------------FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp SCCCEEECCSCSEEE-ECC-C---------------------CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred CcccEeECCCCcccc-chh-h---------------------ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 345555555555442 111 0 0115678888888888887776 577778888888888
Q ss_pred CCcccccCChhhhCCCCCcEEeccCCcccc-cCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchh
Q 047152 552 NNLLSGKLPDCWFQFDSLVILNLANNNFFG-KIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKE 630 (776)
Q Consensus 552 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 630 (776)
+|.+++..|..+.++++|++|++++|++++ .+|..++.+++| ++|++++|++++..|..
T Consensus 433 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------------------~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL--------------------TFLDLSKCQLEQISWGV 492 (606)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------------------CEEECTTSCCCEECTTT
T ss_pred CCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC--------------------CEEECCCCcCCccChhh
Confidence 888888888888888888888888888887 367777776666 78899999999988999
Q ss_pred hhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCC-CCCeeeCCCCcceecCCCC
Q 047152 631 IMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLS-GLSVMDLSYNNLSGKIPLG 702 (776)
Q Consensus 631 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~~ 702 (776)
++++++|++|+|++|++++.+|..++.+++|++|++++|+++ .+|..+..++ +|++|++++|++.|.+|..
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 999999999999999999988999999999999999999998 6777788887 5999999999999988753
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-53 Score=496.85 Aligned_cols=517 Identities=19% Similarity=0.267 Sum_probs=299.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCCC--CCc------------cceeeCCCCCcEEEEECCCCCC
Q 047152 32 NKTRCIDEEREALLTFKASLVDESGILSSWRRED--EKRDC--CKW------------TGVGCSKRTGHVNKLDLQPIGF 95 (776)
Q Consensus 32 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~ 95 (776)
..+.+..+|+.||++||+++.+| +|+..+ ...+| |.| .||+|+. .+||++|+|++
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~--- 332 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG--- 332 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT---
T ss_pred cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc---
Confidence 34456778999999999999876 786421 01244 999 9999975 68999999999
Q ss_pred CCCCCceeccccccCCCCCCEEeC-CCCCCCCCCCCccccCC-CCCC-----EE---------ec-CCCCCC--------
Q 047152 96 DSFPLRGKITPALLKLQHLTYLDL-SRNNFSGSSIPEFLGSL-GKLS-----YL---------GL-SSAEFA-------- 150 (776)
Q Consensus 96 ~~~~l~g~~~~~l~~l~~L~~L~L-s~n~l~~~~~p~~~~~l-~~L~-----~L---------~L-s~n~l~-------- 150 (776)
+++.|.+|++|+++++|++|+| ++|.++|. .|-..... ..+. .+ +. ....+.
T Consensus 333 --~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~ 409 (876)
T 4ecn_A 333 --FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409 (876)
T ss_dssp --TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred --CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence 7899999999999999999999 88877654 22111100 0000 00 00 000000
Q ss_pred ---CCCCccCCCCCCCCEEeccC--CCCCCCCCchhhccCCCCcEEEccCCCCCCc---------------chhhHhhc-
Q 047152 151 ---GPIPHQLGNLSRLQFLDLSF--NNLFSGENLDWLSHLSSLIYLYLDLNDLSNF---------------SNWVQLLS- 209 (776)
Q Consensus 151 ---~~~p~~l~~l~~L~~L~Ls~--n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~---------------~~~~~~l~- 209 (776)
...+........++.+.++. |++.+ .|..++++++|++|+|++|.+++. ..+|..++
T Consensus 410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~--IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f 487 (876)
T 4ecn_A 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITF--ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487 (876)
T ss_dssp TCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hCccccccccccccchhhceeccccCcccc--hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence 00010111122233333322 44432 344566666666666666666551 02456666
Q ss_pred -CCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCC-CCC-CchhhHhhcC-------CCCcCEEEccCCcccc
Q 047152 210 -KLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENN-LTN-SVYPWLFNVS-------SSLVDRISLPSNQLQG 279 (776)
Q Consensus 210 -~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~-l~~-~~~~~l~~~~-------~~~L~~L~L~~n~l~~ 279 (776)
++++|++|+|++|.+.+.+|..++++ ++|++|++++|+ +++ .+|..++++. + |+.|++++|+++
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L---~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~--L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDL---PELQSLNIACNRGISAAQLKADWTRLADDEDTGPK--IQIFYMGYNNLE- 561 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGC---SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT--CCEEECCSSCCC-
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCC---CCCCEEECcCCCCcccccchHHHHhhhhcccccCC--ccEEEeeCCcCC-
Confidence 78888888888888888888888877 788888888887 777 7777777665 5 666666666666
Q ss_pred Ccch--hhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCC-ccEEEcccccccc
Q 047152 280 SIPE--AFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNS-LEWLHLSSNEITG 356 (776)
Q Consensus 280 ~~p~--~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~-L~~L~L~~n~l~~ 356 (776)
.+|. .++++++|++|++++|.++.+| .++.+++|++|++++|.++ .+|..+..++ + |++|++++|.++
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~------~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFT------DQVEGLGFSHNKLK- 632 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEEC------TTCCEEECCSSCCC-
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhcc------ccCCEEECcCCCCC-
Confidence 5565 6666666666666666666666 5666666666666666666 4555555554 4 666666666655
Q ss_pred cCCC-ccCCC--CCCEEeccCccccccchhc---cc--CCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce
Q 047152 357 SMPN-LGEFS--SLKQLNLENNLLNGTIHKS---IG--QLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL 428 (776)
Q Consensus 357 ~~~~-l~~l~--~L~~L~Ls~n~l~~~~~~~---l~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 428 (776)
.+|. +...+ +|+.|++++|++++.+|.. +. .+++|+.|++++|.++ .+|...+..+++|+.|++++|+++
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~- 710 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT- 710 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-
Confidence 2333 33332 2566666666655544321 11 2235555555555554 344433444555555555554443
Q ss_pred ecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCC
Q 047152 429 EFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSN 508 (776)
Q Consensus 429 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n 508 (776)
.+|...+.
T Consensus 711 -----------------------------------------------------------~ip~~~~~------------- 718 (876)
T 4ecn_A 711 -----------------------------------------------------------SIPENSLK------------- 718 (876)
T ss_dssp -----------------------------------------------------------CCCTTSSS-------------
T ss_pred -----------------------------------------------------------ccChHHhc-------------
Confidence 11110000
Q ss_pred cccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhh--CCCCCcEEeccCCcccccCCcc
Q 047152 509 HFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF--QFDSLVILNLANNNFFGKIPNS 586 (776)
Q Consensus 509 ~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~ 586 (776)
+. ...+.++++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..
T Consensus 719 ---~~----------------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~ 771 (876)
T 4ecn_A 719 ---PK----------------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ 771 (876)
T ss_dssp ---CT----------------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred ---cc----------------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchh
Confidence 00 001222446777777777777 5666665 77777777777777775 6666
Q ss_pred ccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeC
Q 047152 587 MGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDL 666 (776)
Q Consensus 587 ~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 666 (776)
+..+++|+.|+++++. ++++|++.+.+|..++++++|+.|+|++|++ +.+|..+. ++|+.|||
T Consensus 772 l~~L~~L~~L~Ls~N~--------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdL 834 (876)
T 4ecn_A 772 PLNSSQLKAFGIRHQR--------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDI 834 (876)
T ss_dssp GGGCTTCCEEECCCCB--------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEEC
T ss_pred hhcCCCCCEEECCCCC--------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEEC
Confidence 6666666444333322 3344555555565566666666666666665 35555543 35555555
Q ss_pred cCceeeecCCccCcCCCCCCeeeCCCCcc
Q 047152 667 SRNQFFGGIPSSLSQLSGLSVMDLSYNNL 695 (776)
Q Consensus 667 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l 695 (776)
++|++....+..+.....+..+.+.+|++
T Consensus 835 s~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 835 ADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CCCCCCccChHHccccccchheeecCCCc
Confidence 55555544444443333334444444433
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-51 Score=492.43 Aligned_cols=528 Identities=21% Similarity=0.204 Sum_probs=407.6
Q ss_pred EEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccC
Q 047152 116 YLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDL 195 (776)
Q Consensus 116 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~ 195 (776)
..|.++++++ .+|. -.++|++|||++|.+++..|..|+++++|++|+|++|.......+..|+++++|++|+|++
T Consensus 8 ~~dcs~~~L~--~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLT--QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSS--CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCC--CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 5677778887 4676 4589999999999999888999999999999999999765434467899999999999999
Q ss_pred CCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchh--hhcCCCCCCccEEEcCCCCCCCCch-hhHhhcCCCCcCEEEc
Q 047152 196 NDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSS--LLNLNSSNSLEVIDLTENNLTNSVY-PWLFNVSSSLVDRISL 272 (776)
Q Consensus 196 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~~~~L~~L~Ls~n~l~~~~~-~~l~~~~~~~L~~L~L 272 (776)
|.+++. .+..++++++|++|+|++|.+++..+.. +.++ ++|++|++++|.+.+..+ ..+.++++ |++|++
T Consensus 83 N~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L---~~L~~L~Ls~N~l~~~~~~~~~~~L~~--L~~L~L 155 (844)
T 3j0a_A 83 SKIYFL--HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL---KALTRLDLSKNQIRSLYLHPSFGKLNS--LKSIDF 155 (844)
T ss_dssp CCCCEE--CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC---SSCCEEEEESCCCCCCCCCGGGGTCSS--CCEEEE
T ss_pred CcCccc--CHhHccCCcccCEeeCcCCCCCcccccCcccccc---CCCCEEECCCCcccccccchhHhhCCC--CCEEEC
Confidence 999874 3678999999999999999999876654 7777 999999999999988655 57888998 999999
Q ss_pred cCCccccCcchhhcCC--CCCCEEEccCCCCCC-CchhhcccCC------CcEEeccCCcCCCccchHHhhccCCCcCCC
Q 047152 273 PSNQLQGSIPEAFGRM--VSLRYLDLSSNELRG-IPKFLGNMCG------LKILYLSGKELKGQLSEFIQDLSSGCTKNS 343 (776)
Q Consensus 273 ~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~-ip~~l~~l~~------L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 343 (776)
++|.+++..+..+..+ ++|+.|+++.|.+.+ .|..+..+.+ |++|++++|.+++..+..+.... ....
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l---~~~~ 232 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI---SKSQ 232 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS---CSCC
T ss_pred CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc---Cccc
Confidence 9999999888888877 899999999999988 6666666555 89999999998887777666542 1126
Q ss_pred ccEEEccccccc---------ccCCC-ccC--CCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhh
Q 047152 344 LEWLHLSSNEIT---------GSMPN-LGE--FSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFS 411 (776)
Q Consensus 344 L~~L~L~~n~l~---------~~~~~-l~~--l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 411 (776)
++.+.++.+... +..+. +.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+. .|.
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~ 311 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFY 311 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTT
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH-Hhc
Confidence 778887744322 11111 222 25677777777777776677777777777777777777665554 567
Q ss_pred CCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCc
Q 047152 412 NLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPD 491 (776)
Q Consensus 412 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~ 491 (776)
.+++|++|++++|++++..+..+..+++|+.|++++|++.+..+..+ ..+++|++|++++|.
T Consensus 312 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-----------~~l~~L~~L~Ls~N~------- 373 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF-----------KFLEKLQTLDLRDNA------- 373 (844)
T ss_dssp TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS-----------CSCCCCCEEEEETCC-------
T ss_pred CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh-----------cCCCCCCEEECCCCC-------
Confidence 77777777777777776666666666666666666666543322222 122345555555554
Q ss_pred ccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCC-hhhhCCCCCc
Q 047152 492 LSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLP-DCWFQFDSLV 570 (776)
Q Consensus 492 ~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~ 570 (776)
+++. +. +++|+.|++++|+++.. |.. ..+++.|++++|++++... ..+.++++|+
T Consensus 374 ------------------l~~i-~~-~~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~ 429 (844)
T 3j0a_A 374 ------------------LTTI-HF-IPSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQ 429 (844)
T ss_dssp ------------------SCCC-SS-CCSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCC
T ss_pred ------------------CCcc-cC-CCCcchhccCCCCcccc-ccc---ccccceeecccCccccCchhhhhhcCCccc
Confidence 4432 11 57899999999999854 322 4678999999999986432 3456899999
Q ss_pred EEeccCCcccccCCc-cccccCCCcEEecCCCcccccccccccccEEEccCCCCc-----cCCchhhhccccCCEEECcC
Q 047152 571 ILNLANNNFFGKIPN-SMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG-----GGVPKEIMDLVGLVALNLSR 644 (776)
Q Consensus 571 ~L~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~ 644 (776)
+|++++|++++..+. .+..+ ++|+.|++++|.++ +..+..|.++++|++|+|++
T Consensus 430 ~L~Ls~N~l~~~~~~~~~~~~--------------------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 430 ILILNQNRFSSCSGDQTPSEN--------------------PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp EEEEESCCCCCCCSSSSSCSC--------------------TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred eeeCCCCcccccccccccccC--------------------CccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 999999999865443 23333 44578899999987 45567789999999999999
Q ss_pred CcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCCC
Q 047152 645 NNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPL 724 (776)
Q Consensus 645 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~l 724 (776)
|++++.+|..+..+++|++|+|++|++++..|..+. ++|+.||+++|++++.+|.. +..+..+.+.|||+.|+|++
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 999998899999999999999999999987777776 89999999999999998853 66888899999999999986
Q ss_pred C
Q 047152 725 R 725 (776)
Q Consensus 725 ~ 725 (776)
.
T Consensus 566 ~ 566 (844)
T 3j0a_A 566 S 566 (844)
T ss_dssp C
T ss_pred H
Confidence 4
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-51 Score=474.13 Aligned_cols=516 Identities=17% Similarity=0.142 Sum_probs=425.4
Q ss_pred CCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCC
Q 047152 82 TGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLS 161 (776)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 161 (776)
..+++.|++++ +.+.+..+.+|.++++|++|++++|.+++. .|..|+++++|++|+|++|++++..|..|++++
T Consensus 31 ~~~l~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 31 PSSTKNIDLSF-----NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp CTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCcCEEECCC-----CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 35799999999 688888888999999999999999999975 688899999999999999999988899999999
Q ss_pred CCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCC-
Q 047152 162 RLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNS- 240 (776)
Q Consensus 162 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~- 240 (776)
+|++|++++|.+.. ..+..++++++|++|++++|.+.+.. +|..++++++|++|++++|++++..+..++.+..++.
T Consensus 105 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 105 SLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp TCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred cCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 99999999999975 44466999999999999999998642 5688999999999999999999988887777633233
Q ss_pred ccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccc-cCcchhhcCCCCCCEEEccCCCCCC------Cc-hhhcccC
Q 047152 241 LEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQ-GSIPEAFGRMVSLRYLDLSSNELRG------IP-KFLGNMC 312 (776)
Q Consensus 241 L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~------ip-~~l~~l~ 312 (776)
+++|++++|.+++..+..+. ..+ |+.|++++|.+. +.+|..++++++|+.+++..+.+.. ++ ..+..+.
T Consensus 183 l~~L~l~~n~l~~~~~~~~~-~~~--L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~ 259 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQAFQ-GIK--LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259 (606)
T ss_dssp CCEEECTTCCCCEECTTTTT-TCE--EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred cceeeccCCCcceeCccccc-Cce--eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence 56999999999865544443 346 999999999987 4677889999999999987655443 11 1222222
Q ss_pred --CCcEEec-cCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCC
Q 047152 313 --GLKILYL-SGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLF 389 (776)
Q Consensus 313 --~L~~L~L-s~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 389 (776)
.++.+++ ..+.+.+.+|. +..++ +|+.|++++|.+.. +|.+..+++|++|++++|.+ +.+| .+ .++
T Consensus 260 ~l~l~~l~l~~~~~~~~~~~~-~~~l~------~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~ 328 (606)
T 3vq2_A 260 DVTIDEFRLTYTNDFSDDIVK-FHCLA------NVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLP 328 (606)
T ss_dssp GSEEEEEEECCCTTCCGGGGS-CGGGT------TCSEEEEESCCCCC-CCCCCTTCCCSEEEEESCCC-SSCC-CC-CCS
T ss_pred hccHhheeccccccccccccc-cccCC------CCCEEEecCccchh-hhhccccccCCEEEcccccC-cccc-cC-CCC
Confidence 4666777 67778887776 77777 89999999999874 45788889999999999999 5777 44 889
Q ss_pred CCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceec--CCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCch
Q 047152 390 KLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEF--SHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNW 467 (776)
Q Consensus 390 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~ 467 (776)
+|++|++++|...+.+ .+..+++|++|++++|++++.. +..+..+++|++|++++|.+.+ +|..+.
T Consensus 329 ~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~-------- 396 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM-------- 396 (606)
T ss_dssp SCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT--------
T ss_pred ccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc--------
Confidence 9999999999665554 3668899999999999988763 6677788899999999998653 332222
Q ss_pred hhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccE
Q 047152 468 FWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIY 547 (776)
Q Consensus 468 ~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 547 (776)
.+++|+.|++++|++.+..|...+ ..+++|++|++++|++++..|..+..+++|++
T Consensus 397 ---~l~~L~~L~l~~n~l~~~~~~~~~---------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 397 ---GLEELQHLDFQHSTLKRVTEFSAF---------------------LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp ---TCTTCCEEECTTSEEESTTTTTTT---------------------TTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ---CCCCCCeeECCCCccCCccChhhh---------------------hccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 245688888888877765542111 12578999999999999999999999999999
Q ss_pred EECcCCcccc-cCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccC
Q 047152 548 LDLSNNLLSG-KLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGG 626 (776)
Q Consensus 548 L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 626 (776)
|++++|++++ .+|..+..+++|++|++++|++++..|..+..+++| ++|++++|++++.
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL--------------------QLLNMSHNNLLFL 512 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------CEEECCSSCCSCE
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC--------------------CEEECCCCcCCCc
Confidence 9999999998 478899999999999999999999999888888777 7899999999999
Q ss_pred CchhhhccccCCEEECcCCcccCcCcccccCcC-CCCeeeCcCceeeecCC
Q 047152 627 VPKEIMDLVGLVALNLSRNNLTGQITPKIGQLK-SLDFLDLSRNQFFGGIP 676 (776)
Q Consensus 627 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p 676 (776)
+|..++++++|++|+|++|+++ .+|..+..++ +|++|++++|.+....+
T Consensus 513 ~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 513 DSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999999999999999 6888899997 69999999999986554
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-49 Score=454.07 Aligned_cols=494 Identities=21% Similarity=0.189 Sum_probs=378.2
Q ss_pred CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEE
Q 047152 112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYL 191 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 191 (776)
+++++|++++|.+++. .+..|.++++|++|++++|++++..|..|+++++|++|++++|++.. ..+..|+++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccc
Confidence 4688899999988864 56678888999999999998887777788889999999999988764 445678888999999
Q ss_pred EccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCC-CCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc---
Q 047152 192 YLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP-IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV--- 267 (776)
Q Consensus 192 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L--- 267 (776)
++++|.++..+. ..++++++|++|++++|.+.+ .+|..++++ ++|++|++++|++++..+..+..+++ +
T Consensus 106 ~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~~ 178 (570)
T 2z63_A 106 VAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNL---TNLEHLDLSSNKIQSIYCTDLRVLHQ--MPLL 178 (570)
T ss_dssp ECTTSCCCCSTT--CSCTTCTTCCEEECCSSCCCCCCCCGGGGGC---TTCCEEECTTSCCCEECGGGGHHHHT--CTTC
T ss_pred cccccccccCCC--ccccccccccEEecCCCccceecChhhhccc---CCCCEEeCcCCccceecHHHccchhc--cchh
Confidence 999998887643 247888999999999998887 468888888 88999999999988877777877777 6
Q ss_pred -CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC--CchhhcccCCCcEEeccCCcCC------CccchHHhhccCC
Q 047152 268 -DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG--IPKFLGNMCGLKILYLSGKELK------GQLSEFIQDLSSG 338 (776)
Q Consensus 268 -~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~~ 338 (776)
+.+++++|.+++..|..+... +|++|++++|.... +|..+..+++++...+....+. ......+..+..
T Consensus 179 ~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~- 256 (570)
T 2z63_A 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN- 256 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG-
T ss_pred hhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc-
Confidence 789999999988877777766 79999999886554 6777888888877766533222 111222222221
Q ss_pred CcCCCccEEEcccc-cccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCC
Q 047152 339 CTKNSLEWLHLSSN-EITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRL 416 (776)
Q Consensus 339 ~~~~~L~~L~L~~n-~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L 416 (776)
-.++.++++++ .+.+..+. +..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|
T Consensus 257 ---l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L 327 (570)
T 2z63_A 257 ---LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSL 327 (570)
T ss_dssp ---SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSC
T ss_pred ---cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---cccccc
Confidence 03566777766 55555555 677777888888777777 466666666 7777777777775 4443 356677
Q ss_pred cEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccC--Ccccc
Q 047152 417 AALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKV--PDLSL 494 (776)
Q Consensus 417 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~--p~~~~ 494 (776)
++|++++|.+.+..+. .. +++|++|++++|.+++.. |. .+
T Consensus 328 ~~L~l~~n~~~~~~~~--~~-----------------------------------~~~L~~L~l~~n~l~~~~~~~~-~~ 369 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSE--VD-----------------------------------LPSLEFLDLSRNGLSFKGCCSQ-SD 369 (570)
T ss_dssp CEEEEESCBSCCBCCC--CB-----------------------------------CTTCCEEECCSSCCBEEEEEEH-HH
T ss_pred CEEeCcCCcccccccc--cc-----------------------------------CCCCCEEeCcCCccCccccccc-cc
Confidence 7777777766543322 22 234555555555554321 11 00
Q ss_pred cccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCC-hhhhCCCCCcEEe
Q 047152 495 RFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLP-DCWFQFDSLVILN 573 (776)
Q Consensus 495 ~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ 573 (776)
..+++|++|++++|++++..+. +..+++|++|++++|.+++..| ..+.++++|++|+
T Consensus 370 ---------------------~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 370 ---------------------FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp ---------------------HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred ---------------------cccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 0145778888888888776555 7778899999999999987666 5688899999999
Q ss_pred ccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCc-cCCchhhhccccCCEEECcCCcccCcCc
Q 047152 574 LANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG-GGVPKEIMDLVGLVALNLSRNNLTGQIT 652 (776)
Q Consensus 574 Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 652 (776)
+++|.+.+..|..+..+++| ++|++++|+++ +.+|..++.+++|++|++++|++++..|
T Consensus 428 l~~n~l~~~~~~~~~~l~~L--------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSL--------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTC--------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred CcCCcccccchhhhhcCCcC--------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 99999988888888777777 77899999997 5789999999999999999999998889
Q ss_pred ccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcc
Q 047152 653 PKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQL 705 (776)
Q Consensus 653 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 705 (776)
..++.+++|++|++++|++++..|..+.++++|++|++++|+++|.+|....+
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 99999999999999999999988889999999999999999999999975433
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.2e-48 Score=442.95 Aligned_cols=495 Identities=21% Similarity=0.219 Sum_probs=357.3
Q ss_pred CCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCC
Q 047152 70 CCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEF 149 (776)
Q Consensus 70 ~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l 149 (776)
.|.|.|+ |+.. + ++++ .+|..+. ++|++|++++|.+++. .|..+.++++|++|++++|++
T Consensus 3 ~C~~~~~-c~~~----------~-----~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i 62 (549)
T 2z81_A 3 SCDASGV-CDGR----------S-----RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRI 62 (549)
T ss_dssp EECTTSE-EECT----------T-----SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCC
T ss_pred cCCCCce-EECC----------C-----Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCc
Confidence 4899998 8532 2 2333 3455443 7899999999999875 678899999999999999999
Q ss_pred CCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCc
Q 047152 150 AGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP 229 (776)
Q Consensus 150 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 229 (776)
++..|..|+++++|++|++++|++.+ ..+..++++++|++|++++|.+++.+ .+..++++++|++|++++|.+.+.+|
T Consensus 63 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 63 NTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLG-VTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSC-SSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccc-hhhhhhccCCccEEECCCCccccccC
Confidence 98888899999999999999999975 45556999999999999999998642 34578899999999999998555444
Q ss_pred -hhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc---
Q 047152 230 -SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP--- 305 (776)
Q Consensus 230 -~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip--- 305 (776)
..+.++ ++|++|++++|++++..|..+..+++ |++|+++.|.+.......+..+++|++|++++|++++++
T Consensus 141 ~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 215 (549)
T 2z81_A 141 RIDFAGL---TSLNELEIKALSLRNYQSQSLKSIRD--IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215 (549)
T ss_dssp TTTTTTC---CEEEEEEEEETTCCEECTTTTTTCSE--EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCC
T ss_pred Hhhhhcc---cccCeeeccCCcccccChhhhhcccc--CceEecccCcccccchhhHhhcccccEEEccCCccccccccc
Confidence 577777 89999999999999888888888888 999999998876433333467899999999999988842
Q ss_pred h-hhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCC-------CccCCCCCCEEeccCccc
Q 047152 306 K-FLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMP-------NLGEFSSLKQLNLENNLL 377 (776)
Q Consensus 306 ~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~-------~l~~l~~L~~L~Ls~n~l 377 (776)
. ....+++|++|++++|.+++..+..+..... ...+|+.+++++|.+.+... .+..+++|+.|++.++.+
T Consensus 216 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 293 (549)
T 2z81_A 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR--YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293 (549)
T ss_dssp CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG--GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC
T ss_pred cchhhhhhcccceeccccccchhHHHHHHHHhh--hhccccccccccccccccccccccchhhhhhhccccccccccccc
Confidence 2 2345778899999998888766555433211 12278888888888765321 134566666777666655
Q ss_pred cccc-----hhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCC
Q 047152 378 NGTI-----HKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGP 452 (776)
Q Consensus 378 ~~~~-----~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 452 (776)
.... +..+...++|+.|++++|.+. .+|...+..+++|++|++++|++++
T Consensus 294 ~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~------------------------ 348 (549)
T 2z81_A 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE------------------------ 348 (549)
T ss_dssp SCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCH------------------------
T ss_pred chhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccc------------------------
Confidence 4321 111122344555555555553 3444333445555555555554443
Q ss_pred CCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccc
Q 047152 453 RFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFS 532 (776)
Q Consensus 453 ~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~ 532 (776)
.+|.. .. ....+++|++|++++|+++
T Consensus 349 -----------------------------------~~~~~-~~------------------~~~~l~~L~~L~Ls~N~l~ 374 (549)
T 2z81_A 349 -----------------------------------EYLKN-SA------------------CKGAWPSLQTLVLSQNHLR 374 (549)
T ss_dssp -----------------------------------HHHHH-HT------------------CTTSSTTCCEEECTTSCCC
T ss_pred -----------------------------------ccccc-hh------------------hhhccccCcEEEccCCccc
Confidence 22210 00 0001345566666666665
Q ss_pred cCCC--ccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccccccc
Q 047152 533 GSIS--FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTL 610 (776)
Q Consensus 533 ~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l 610 (776)
+..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+ .
T Consensus 375 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~----------------------~ 430 (549)
T 2z81_A 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI----------------------P 430 (549)
T ss_dssp CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS----------------------C
T ss_pred ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh----------------------c
Confidence 4432 34566778888888888887 577777778888888888888763 33322 1
Q ss_pred ccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeC
Q 047152 611 GLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDL 690 (776)
Q Consensus 611 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 690 (776)
++|++||+++|++++.+ +.+++|++|+|++|+++ .+|. .+.+++|++|+|++|++++.+|..+..+++|++|++
T Consensus 431 ~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe
Confidence 24588999999999753 57899999999999999 6776 578999999999999999999999999999999999
Q ss_pred CCCcceecCCCC
Q 047152 691 SYNNLSGKIPLG 702 (776)
Q Consensus 691 s~N~l~g~iP~~ 702 (776)
++|+++|.+|..
T Consensus 505 ~~N~~~~~~~~~ 516 (549)
T 2z81_A 505 HTNPWDCSCPRI 516 (549)
T ss_dssp CSSCBCCCHHHH
T ss_pred cCCCccCCCccH
Confidence 999999998853
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-46 Score=431.02 Aligned_cols=515 Identities=22% Similarity=0.236 Sum_probs=378.4
Q ss_pred CCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEc
Q 047152 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYL 193 (776)
Q Consensus 114 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L 193 (776)
.++.+.++..++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|++.. ..+..|+++++|++|++
T Consensus 9 ~~~~~c~~~~l~--~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 9 NITYQCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp TTEEECCSSCCS--SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCcc--ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeC
Confidence 345667776776 4776554 689999999999998888899999999999999999875 45567899999999999
Q ss_pred cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCC-CchhhHhhcCCCCcCEEEc
Q 047152 194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN-SVYPWLFNVSSSLVDRISL 272 (776)
Q Consensus 194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~~~~~L~~L~L 272 (776)
++|.++..+ +..++++++|++|++++|.+++..+..++++ ++|++|++++|.+.+ .+|..+.++++ |++|++
T Consensus 84 ~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l---~~L~~L~L~~n~l~~~~lp~~~~~l~~--L~~L~l 156 (570)
T 2z63_A 84 TGNPIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNLIQSFKLPEYFSNLTN--LEHLDL 156 (570)
T ss_dssp TTCCCCEEC--TTTTTTCTTCCEEECTTSCCCCSTTCSCTTC---TTCCEEECCSSCCCCCCCCGGGGGCTT--CCEEEC
T ss_pred cCCcCCccC--HhhhcCccccccccccccccccCCCcccccc---ccccEEecCCCccceecChhhhcccCC--CCEEeC
Confidence 999998753 4678999999999999999988776667777 899999999999987 57888998988 999999
Q ss_pred cCCccccCcchhhcCCCCC----CEEEccCCCCCCCc-hhhcccCCCcEEeccCCcCCC-ccchHHhhccCCCcCCCccE
Q 047152 273 PSNQLQGSIPEAFGRMVSL----RYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKG-QLSEFIQDLSSGCTKNSLEW 346 (776)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~~~~~L~~ 346 (776)
++|++++..+..++.+++| ++|++++|.+++++ ..+.. .+|++|++++|.... ..+..+..+. .++.
T Consensus 157 ~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~------~l~~ 229 (570)
T 2z63_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLA------GLEV 229 (570)
T ss_dssp TTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTT------TCEE
T ss_pred cCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCcc------ccce
Confidence 9999988888888888888 88999999998854 44444 478999998885443 3455566665 6666
Q ss_pred EEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCc-cccccccHHhhhCCCCCcEEECCCCc
Q 047152 347 LHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGN-SLGGVISEALFSNLSRLAALDLADNS 425 (776)
Q Consensus 347 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~ 425 (776)
..+....+... ..++. +....+. .+..+ .++.++++++ .+.+.++. .+..+++|++|++++|.
T Consensus 230 ~~l~~~~~~~~-------~~l~~--~~~~~~~-----~l~~l-~l~~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 293 (570)
T 2z63_A 230 HRLVLGEFRNE-------GNLEK--FDKSALE-----GLCNL-TIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLVSVT 293 (570)
T ss_dssp EEEEEEECCCC-------SSCEE--CCTTTTG-----GGGGS-EEEEEEEEETTEEESCSTT-TTGGGTTCSEEEEESCE
T ss_pred eeeccccccCc-------hhhhh--cchhhhc-----ccccc-chhhhhhhcchhhhhhchh-hhcCcCcccEEEecCcc
Confidence 66554333211 11110 0111111 11111 2344445444 44444443 45555556666665555
Q ss_pred cceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEec
Q 047152 426 LTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDI 505 (776)
Q Consensus 426 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l 505 (776)
++ .++..+... +|+++++++|.+. .+|.+ .+++|+.|++++|.+.+.++.
T Consensus 294 l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~-------------~l~~L~~L~l~~n~~~~~~~~-------------- 343 (570)
T 2z63_A 294 IE-RVKDFSYNF-GWQHLELVNCKFG-QFPTL-------------KLKSLKRLTFTSNKGGNAFSE-------------- 343 (570)
T ss_dssp EC-SCCBCCSCC-CCSEEEEESCBCS-SCCBC-------------BCSSCCEEEEESCBSCCBCCC--------------
T ss_pred ch-hhhhhhccC-CccEEeeccCccc-ccCcc-------------cccccCEEeCcCCcccccccc--------------
Confidence 54 233333333 5555555555443 22210 123455555555554433221
Q ss_pred cCCcccccCCCCCCCCcEEEccCCccccCC--CccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccC
Q 047152 506 SSNHFEGPIPPLPSNATSLNLSKNKFSGSI--SFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKI 583 (776)
Q Consensus 506 ~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 583 (776)
..+++|++|++++|++++.. +..+..+++|++|++++|.+++..+. +..+++|++|++++|.+.+..
T Consensus 344 ----------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 344 ----------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp ----------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred ----------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence 12567888888888887654 55677788888888888888855444 888888888888888887665
Q ss_pred C-ccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCccc-CcCcccccCcCCC
Q 047152 584 P-NSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLT-GQITPKIGQLKSL 661 (776)
Q Consensus 584 p-~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L 661 (776)
| ..+..+++| ++|++++|.+.+..|..+.++++|++|++++|+++ +.+|..++.+++|
T Consensus 413 ~~~~~~~l~~L--------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 413 EFSVFLSLRNL--------------------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp TSCTTTTCTTC--------------------CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred chhhhhcCCCC--------------------CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 5 345555555 78999999999999999999999999999999998 6799999999999
Q ss_pred CeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-CcccccccccccCCCCCCCCCC
Q 047152 662 DFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNELVYAGNPELCGLPL 724 (776)
Q Consensus 662 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~l 724 (776)
++|++++|++++..|..+.++++|++|++++|++++..|.. ..+..+..+.+.+||+.|+++.
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999999999999999999999999999877653 5677888899999999998874
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-47 Score=430.67 Aligned_cols=454 Identities=19% Similarity=0.207 Sum_probs=275.2
Q ss_pred EEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccC
Q 047152 116 YLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDL 195 (776)
Q Consensus 116 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~ 195 (776)
+||+++|.++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|++.+ ..+..|+++++|++|++++
T Consensus 4 ~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 4 LVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp EEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCS
T ss_pred eEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecCC
Confidence 4455555554 2444333 455555555555554444445555555555555555432 2233445555555555555
Q ss_pred CCCCCcchhhHhhcCCCCCCEEEccCCCCCC-CCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152 196 NDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP-IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS 274 (776)
Q Consensus 196 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~ 274 (776)
|+++.++ .. .+++|++|++++|.+++ ..|..++++ ++|++|++++|.+++ ..+..+++..++.|++++
T Consensus 79 N~l~~lp---~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l---~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 79 NKLVKIS---CH--PTVNLKHLDLSFNAFDALPICKEFGNM---SQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp SCCCEEE---CC--CCCCCSEEECCSSCCSSCCCCGGGGGC---TTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred CceeecC---cc--ccCCccEEeccCCccccccchhhhccC---CcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 5554432 11 45555555555555554 345555555 555566665555554 223334440125666666
Q ss_pred Ccc--ccCcchhhcCCC-CCCEEEccCCCCCC-Cc-hhhcccCCCcEEeccCCc-------CCCccchHHhhccCCCcCC
Q 047152 275 NQL--QGSIPEAFGRMV-SLRYLDLSSNELRG-IP-KFLGNMCGLKILYLSGKE-------LKGQLSEFIQDLSSGCTKN 342 (776)
Q Consensus 275 n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~-ip-~~l~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~~~~~~ 342 (776)
|.+ .+..|..+..+. +...+++++|.+.+ ++ ..+..+++|+.+++++|. +.+.++ .+..++
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~------ 220 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP------ 220 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT------
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcccc------
Confidence 655 555555555444 23344555555554 22 334555556666666554 333333 333343
Q ss_pred CccEEEcccccccccCCC----ccCCCCCCEEeccCccccccchhcc-----cCCCCCcEEECCCccccccccHHhhhCC
Q 047152 343 SLEWLHLSSNEITGSMPN----LGEFSSLKQLNLENNLLNGTIHKSI-----GQLFKLEMLKLNGNSLGGVISEALFSNL 413 (776)
Q Consensus 343 ~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~~~~~~~l 413 (776)
+|+.|++++|.+++..+. ....++|++|++++|+++|.+|..+ ..+++|+.+++++|.+ .+|...+..+
T Consensus 221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~ 298 (520)
T 2z7x_B 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI 298 (520)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH
T ss_pred chhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc
Confidence 555555555554432111 1112355556666655555555555 5555555555555555 3332122221
Q ss_pred ---CCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCC
Q 047152 414 ---SRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVP 490 (776)
Q Consensus 414 ---~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p 490 (776)
.+|+.|++++|.+. +.
T Consensus 299 ~~~~~L~~L~l~~n~l~-----------------------------------------------------------~~-- 317 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRMV-----------------------------------------------------------HM-- 317 (520)
T ss_dssp HHTCCCSEEEEESSCCC-----------------------------------------------------------CC--
T ss_pred cccCceeEEEcCCCccc-----------------------------------------------------------cc--
Confidence 23444444333322 10
Q ss_pred cccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccc--cCChhhhCCCC
Q 047152 491 DLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSG--KLPDCWFQFDS 568 (776)
Q Consensus 491 ~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~ 568 (776)
..+..+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+..+++
T Consensus 318 ----------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 318 ----------------------LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375 (520)
T ss_dssp ----------------------CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred ----------------------cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence 001225677888888888888777778889999999999999987 56788999999
Q ss_pred CcEEeccCCcccccCCcc-ccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcc
Q 047152 569 LVILNLANNNFFGKIPNS-MGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNL 647 (776)
Q Consensus 569 L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 647 (776)
|++|++++|++++.+|.. +..+++| ++|++++|++++.+|..+. ++|++|++++|++
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~~l~~L--------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l 433 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCSWTKSL--------------------LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI 433 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCCCCTTC--------------------CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC
T ss_pred CCEEECCCCcCCcccccchhccCccC--------------------CEEECcCCCCCcchhhhhc--ccCCEEECCCCcc
Confidence 999999999999756653 5555555 7899999999988887765 7999999999999
Q ss_pred cCcCcccccCcCCCCeeeCcCceeeecCCcc-CcCCCCCCeeeCCCCcceecCCC
Q 047152 648 TGQITPKIGQLKSLDFLDLSRNQFFGGIPSS-LSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 648 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
+ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|+++|.++.
T Consensus 434 ~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 434 K-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred c-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9 79998999999999999999999 56655 99999999999999999998774
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.6e-46 Score=426.07 Aligned_cols=487 Identities=23% Similarity=0.241 Sum_probs=336.3
Q ss_pred CCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEc
Q 047152 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYL 193 (776)
Q Consensus 114 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L 193 (776)
..+.|.+++.++ .+|..+. ++|++|++++|++++..|..|+++++|++|++++|++.. ..+..|+++++|++|++
T Consensus 7 ~~~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 7 SGVCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp TSEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEC
T ss_pred CceEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEEC
Confidence 344688888888 4777664 789999999999998888889999999999999998874 44456777888888888
Q ss_pred cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCC-CchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEc
Q 047152 194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI-IPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272 (776)
Q Consensus 194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L 272 (776)
++|.+++.+ +..++++++|++|++++|.+++. .|..++++ ++|++|++++|++.+.+|
T Consensus 82 s~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l---~~L~~L~L~~n~~~~~~~---------------- 140 (549)
T 2z81_A 82 SDNHLSSLS--SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL---TNLQTLRIGNVETFSEIR---------------- 140 (549)
T ss_dssp TTSCCCSCC--HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC---TTCCEEEEEESSSCCEEC----------------
T ss_pred CCCccCccC--HHHhccCCCCcEEECCCCcccccchhhhhhcc---CCccEEECCCCccccccC----------------
Confidence 888777742 34577777777777777777652 34455555 666666666665333333
Q ss_pred cCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc
Q 047152 273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS 351 (776)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~ 351 (776)
+..++++++|++|++++|.+++ +|..++.+++|++|++++|.+.......+..++ +|++|++++
T Consensus 141 ---------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~------~L~~L~L~~ 205 (549)
T 2z81_A 141 ---------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS------SVRYLELRD 205 (549)
T ss_dssp ---------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT------TBSEEEEES
T ss_pred ---------HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcc------cccEEEccC
Confidence 1234455555555555555555 445555555555555555554433222233344 566666666
Q ss_pred ccccccC----CCccCCCCCCEEeccCccccccchh----cccCCCCCcEEECCCcccccccc-----HHhhhCCCCCcE
Q 047152 352 NEITGSM----PNLGEFSSLKQLNLENNLLNGTIHK----SIGQLFKLEMLKLNGNSLGGVIS-----EALFSNLSRLAA 418 (776)
Q Consensus 352 n~l~~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~N~l~~~~~-----~~~~~~l~~L~~ 418 (776)
|++++.. +....+++|+.|++++|.+++..+. .+..+++|+.+++++|.+.+... ...+..+++|+.
T Consensus 206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 285 (549)
T 2z81_A 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285 (549)
T ss_dssp CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE
T ss_pred CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccc
Confidence 6666532 1234566777777777777664433 33556777888888877655311 012456778888
Q ss_pred EECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccC
Q 047152 419 LDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDI 498 (776)
Q Consensus 419 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~ 498 (776)
+++.++.+..... + ..++ .+.....+++.+++++|++. .+|...+.
T Consensus 286 L~l~~~~i~~~~~--~---------------------------~~l~-~~~~~~~~L~~L~l~~n~l~-~ip~~~~~--- 331 (549)
T 2z81_A 286 VTIRRLHIPQFYL--F---------------------------YDLS-TVYSLLEKVKRITVENSKVF-LVPCSFSQ--- 331 (549)
T ss_dssp EEEESCBCSCGGG--S---------------------------CCCC-HHHHHSTTCCEEEEESSCCC-CCCHHHHH---
T ss_pred ccccccccchhhh--c---------------------------ccch-hhhhhcccceEEEeccCccc-cCCHHHHh---
Confidence 8888776542110 0 0011 11222346777777777764 34431100
Q ss_pred CCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCC---ccccCCCCccEEECcCCcccccCC--hhhhCCCCCcEEe
Q 047152 499 SGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSIS---FLCSLSNRLIYLDLSNNLLSGKLP--DCWFQFDSLVILN 573 (776)
Q Consensus 499 ~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~ 573 (776)
.+++|++|++++|++++.++ ..+..+++|++|++++|++++..+ ..+..+++|++|+
T Consensus 332 ------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 332 ------------------HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp ------------------HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred ------------------cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 14678888888888887654 346778999999999999986543 5688999999999
Q ss_pred ccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcc
Q 047152 574 LANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITP 653 (776)
Q Consensus 574 Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 653 (776)
+++|+++ .+|..+..+++| ++|++++|+++ .+|..+. ++|++|+|++|++++.+
T Consensus 394 Ls~N~l~-~lp~~~~~~~~L--------------------~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~-- 447 (549)
T 2z81_A 394 ISRNTFH-PMPDSCQWPEKM--------------------RFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS-- 447 (549)
T ss_dssp CTTCCCC-CCCSCCCCCTTC--------------------CEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC--
T ss_pred CCCCCCc-cCChhhcccccc--------------------cEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc--
Confidence 9999998 678777766666 78899999998 4555442 68999999999999643
Q ss_pred cccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-CcccccccccccCCCCCCCCC
Q 047152 654 KIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 654 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~ 723 (776)
+.+++|++|+|++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+..+.+++||+.|+|+
T Consensus 448 --~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 --LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp --CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred --ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 57899999999999998 6776 467899999999999999887753 567788889999999999886
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.9e-45 Score=423.22 Aligned_cols=514 Identities=22% Similarity=0.208 Sum_probs=351.5
Q ss_pred CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEE
Q 047152 112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYL 191 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 191 (776)
+.+++|||++|.|++. .|..|.++++|++|||++|++++..|.+|+++++|++|+|++|++.. ..+..|+++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEE
Confidence 4789999999999864 45688999999999999999987777789999999999999998864 445678899999999
Q ss_pred EccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCC-CchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCC--CcC
Q 047152 192 YLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI-IPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSS--LVD 268 (776)
Q Consensus 192 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~--~L~ 268 (776)
++++|++++++ +..++++++|++|++++|.+++. .|..++.+ ++|++|++++|++++..+..+..+.+. ...
T Consensus 130 ~Ls~N~l~~l~--~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 130 VAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL---TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp ECTTSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC---TTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred ECCCCcCCCCC--hhhhhcCcccCeeccccCccccCCCchhhccc---hhhhhhcccCccccccccccccchhhhhhhhh
Confidence 99999888854 24578889999999999988764 56777777 888999999998888777776665431 134
Q ss_pred EEEccCCccccCcchhhcCCCCCCEEEccCCCCCC--CchhhcccCCCcEEeccCCcC------CCccchHHhhccCCCc
Q 047152 269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG--IPKFLGNMCGLKILYLSGKEL------KGQLSEFIQDLSSGCT 340 (776)
Q Consensus 269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~~~~ 340 (776)
.++++.|.+....+..+ ....++.+++.+|.... .+..+..+..++...+..+.. .......+....
T Consensus 205 ~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~---- 279 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC---- 279 (635)
T ss_dssp EEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG----
T ss_pred hhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc----
Confidence 67788888776544433 34456777777776554 344566666666665543222 222222333333
Q ss_pred CCCccEEEccccccc----ccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCC
Q 047152 341 KNSLEWLHLSSNEIT----GSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRL 416 (776)
Q Consensus 341 ~~~L~~L~L~~n~l~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L 416 (776)
.+...++..+... +....+....+++.+++.++.+.+.. .+.....|+.|++.+|.+.+..+ ..+..|
T Consensus 280 --~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~----~~l~~L 351 (635)
T 4g8a_A 280 --NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT----LKLKSL 351 (635)
T ss_dssp --GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC----CBCTTC
T ss_pred --chhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc----ccchhh
Confidence 4444444433222 12222455566666666666655332 23445566666666666643322 234556
Q ss_pred cEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccc
Q 047152 417 AALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRF 496 (776)
Q Consensus 417 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~ 496 (776)
+.+++..|..... .....+++|+.+++++|.+... +..+. ....
T Consensus 352 ~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~---------------------------------~~~~~-~~~~ 395 (635)
T 4g8a_A 352 KRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFK---------------------------------GCCSQ-SDFG 395 (635)
T ss_dssp CEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEE---------------------------------EECCH-HHHS
T ss_pred hhcccccccCCCC--cccccccccccchhhccccccc---------------------------------ccccc-chhh
Confidence 6666666654432 1223344444454444443210 01111 1111
Q ss_pred cCCCCeEeccCCcccccCCCC--CCCCcEEEccCCccccCCC-ccccCCCCccEEECcCCcccccCChhhhCCCCCcEEe
Q 047152 497 DISGPGIDISSNHFEGPIPPL--PSNATSLNLSKNKFSGSIS-FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILN 573 (776)
Q Consensus 497 ~~~l~~l~l~~n~l~g~~p~~--~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 573 (776)
...++.+++..+...+..+.. +.+++.+++++++.....+ ..+..+++++.+++++|.+.+..+..+..+++|++|+
T Consensus 396 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~ 475 (635)
T 4g8a_A 396 TISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 475 (635)
T ss_dssp CSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred hhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 112244444444443322221 5667777777776665544 3566677888888888888877777778888888888
Q ss_pred ccCCcc-cccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCc
Q 047152 574 LANNNF-FGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQIT 652 (776)
Q Consensus 574 Ls~N~l-~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 652 (776)
+++|++ .+..|..|..+++| ++|||++|++++.+|..|+++++|++|+|++|+|++..|
T Consensus 476 Ls~N~~~~~~~~~~~~~l~~L--------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 476 MAGNSFQENFLPDIFTELRNL--------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp CTTCEEGGGEECSCCTTCTTC--------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred hhhcccccccCchhhhhcccc--------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 888864 34466666666655 789999999999999999999999999999999998888
Q ss_pred ccccCcCCCCeeeCcCceeeecCCccCcCC-CCCCeeeCCCCcceecCCC
Q 047152 653 PKIGQLKSLDFLDLSRNQFFGGIPSSLSQL-SGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 653 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP~ 701 (776)
..++.+++|++|||++|++++..|..+..+ ++|++|++++|+++|.+..
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 899999999999999999999999999998 6899999999999998763
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6e-45 Score=412.82 Aligned_cols=458 Identities=21% Similarity=0.222 Sum_probs=319.4
Q ss_pred CEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEc
Q 047152 140 SYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSL 219 (776)
Q Consensus 140 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L 219 (776)
++||+++|+++ .+|..+. ++|++|++++|.+.. ..+..+.++++|++|++++|++++. .+..++++++|++|++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYL--DISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEE--EGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCc--ChHHhhcccCCCEEec
Confidence 57888998888 6777665 788888888888764 3345666666777777766666653 2345566666666666
Q ss_pred cCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCcccc-CcchhhcCCCCCCEEEccC
Q 047152 220 YSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQG-SIPEAFGRMVSLRYLDLSS 298 (776)
Q Consensus 220 ~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~ 298 (776)
++|+++. +|.. .+ ++|++|++++ |++++ .+|..|+++++|++|++++
T Consensus 77 s~N~l~~-lp~~--~l---~~L~~L~L~~--------------------------N~l~~~~~p~~~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 77 SHNKLVK-ISCH--PT---VNLKHLDLSF--------------------------NAFDALPICKEFGNMSQLKFLGLST 124 (520)
T ss_dssp CSSCCCE-EECC--CC---CCCSEEECCS--------------------------SCCSSCCCCGGGGGCTTCCEEEEEE
T ss_pred CCCceee-cCcc--cc---CCccEEeccC--------------------------CccccccchhhhccCCcceEEEecC
Confidence 6665552 2322 22 4444444444 44444 2455555666666666666
Q ss_pred CCCCCCchhhcccCCC--cEEeccCCcC--CCccchHHhhccCCCcCCCccEEEcccccccccCCC--ccCCCCCCEEec
Q 047152 299 NELRGIPKFLGNMCGL--KILYLSGKEL--KGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN--LGEFSSLKQLNL 372 (776)
Q Consensus 299 n~l~~ip~~l~~l~~L--~~L~Ls~n~l--~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~L 372 (776)
|.+++ ..+..+++| ++|++++|.+ .+..|..+..+.. ....+++++|.+.+..+. +..+++|+.|++
T Consensus 125 n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-----~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 125 THLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT-----ESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp SSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-----EEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred cccch--hhccccccceeeEEEeeccccccccccccccccccc-----ceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence 66554 234455555 6666666666 5555555554431 234567777777766665 677888888888
Q ss_pred cCcc-------ccccchhcccCCCCCcEEECCCccccccccHHhh--hCCCCCcEEECCCCccceecCCCC-----CCCC
Q 047152 373 ENNL-------LNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALF--SNLSRLAALDLADNSLTLEFSHDW-----IPPF 438 (776)
Q Consensus 373 s~n~-------l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~-----~~~~ 438 (776)
++|. +.+.+| .+..+++|+.|++++|.+++..+.... ...++|++|++++|++++.+|..+ ..+.
T Consensus 198 ~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 198 KCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276 (520)
T ss_dssp EECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred cccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCc
Confidence 8886 666665 678888888888888887654332211 124578888888888877666655 3333
Q ss_pred CCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCC
Q 047152 439 QLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLP 518 (776)
Q Consensus 439 ~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~ 518 (776)
. |+.++++.|.+ .+|...+... + .-
T Consensus 277 ~-----------------------------------L~~l~l~~n~~--~~p~~~~~~~------------~------~~ 301 (520)
T 2z7x_B 277 A-----------------------------------LSIHQVVSDVF--GFPQSYIYEI------------F------SN 301 (520)
T ss_dssp E-----------------------------------EEEEEEEECCC--CSCTHHHHHH------------H------HT
T ss_pred e-----------------------------------eEeccccccce--ecchhhhhcc------------c------cc
Confidence 3 44444444444 2221000000 0 01
Q ss_pred CCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccc--cCCccccccCCCcEE
Q 047152 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG--KIPNSMGFLHNIRSL 596 (776)
Q Consensus 519 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L 596 (776)
.+++.|++++|.+.+... ...+++|++|++++|++++.+|..+..+++|++|++++|++++ .+|..++.+++|
T Consensus 302 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L--- 376 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL--- 376 (520)
T ss_dssp CCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC---
T ss_pred CceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC---
Confidence 357888888888765431 2568899999999999998899999999999999999999986 455666666666
Q ss_pred ecCCCcccccccccccccEEEccCCCCccCCchh-hhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecC
Q 047152 597 SLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKE-IMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGI 675 (776)
Q Consensus 597 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 675 (776)
++|++++|++++.+|.. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+
T Consensus 377 -----------------~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~i 436 (520)
T 2z7x_B 377 -----------------QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SI 436 (520)
T ss_dssp -----------------CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CC
T ss_pred -----------------CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-cc
Confidence 78999999999867764 88899999999999999988888775 89999999999999 88
Q ss_pred CccCcCCCCCCeeeCCCCcceecCCCC--CcccccccccccCCCCCCCCCC
Q 047152 676 PSSLSQLSGLSVMDLSYNNLSGKIPLG--TQLQSFNELVYAGNPELCGLPL 724 (776)
Q Consensus 676 p~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~gN~~lc~~~l 724 (776)
|..+..+++|++|++++|+++ .+|.. ..+..+..+.+.+||+.|+|++
T Consensus 437 p~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 437 PKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred chhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 988889999999999999999 57754 4567788899999999998763
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.1e-46 Score=429.75 Aligned_cols=463 Identities=19% Similarity=0.207 Sum_probs=289.2
Q ss_pred CCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcc----------hhhHhhcCCCCCCEEEccCCCCCCCCch
Q 047152 161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFS----------NWVQLLSKLHSLTTLSLYSCDLPPIIPS 230 (776)
Q Consensus 161 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----------~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 230 (776)
.+++.|+|++|.+.+ ..++.++++++|++|+|++|.+...+ .++... +..|+ ++++.+.+.+..|.
T Consensus 81 ~~V~~L~L~~~~l~g-~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEE-EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCC-cCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence 467889999999875 56678899999999999988652110 112222 33344 55555555555554
Q ss_pred hhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEc--cCCccccCcchhhcCCCCCCEEEccCCCCCC-----
Q 047152 231 SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL--PSNQLQGSIPEAFGRMVSLRYLDLSSNELRG----- 303 (776)
Q Consensus 231 ~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L--~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~----- 303 (776)
.+..+ +..+..+++....+... .... ++.+.+ ..|++++ +|..++++++|++|+|++|.+++
T Consensus 157 ~~~~~--~~~l~~~~l~~~~~~~~------~~~~--l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~ 225 (636)
T 4eco_A 157 DFSDL--IKDCINSDPQQKSIKKS------SRIT--LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICE 225 (636)
T ss_dssp GSCHH--HHHHHHHCTTSCCCCCC------CCCC--CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred hHHHH--HHHHhhcCccccccccc------cccc--hhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccc
Confidence 44321 01111111111111100 0000 122222 2456666 66666666666666666666666
Q ss_pred -------------Cchhhc--ccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccc-ccc-cCCC-ccCC-
Q 047152 304 -------------IPKFLG--NMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE-ITG-SMPN-LGEF- 364 (776)
Q Consensus 304 -------------ip~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~-l~~-~~~~-l~~l- 364 (776)
+|..++ ++++|++|++++|.+.+.+|..+..++ +|++|++++|+ +++ .+|. ++.+
T Consensus 226 ~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~------~L~~L~Ls~n~~l~~~~lp~~~~~L~ 299 (636)
T 4eco_A 226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP------EMQLINVACNRGISGEQLKDDWQALA 299 (636)
T ss_dssp SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS------SCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred cccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC------CCCEEECcCCCCCccccchHHHHhhh
Confidence 666655 666666666666666666665555555 56666666665 554 3443 3333
Q ss_pred -----CCCCEEeccCccccccchh--cccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCC
Q 047152 365 -----SSLKQLNLENNLLNGTIHK--SIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPP 437 (776)
Q Consensus 365 -----~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 437 (776)
++|++|++++|+++ .+|. .++.+++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|..+..+
T Consensus 300 ~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 375 (636)
T 4eco_A 300 DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGF 375 (636)
T ss_dssp HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEE
T ss_pred ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhh
Confidence 56666666666665 5555 55666666666666666655555 3555556666666666555 344444443
Q ss_pred CC-CcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCC
Q 047152 438 FQ-LNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPP 516 (776)
Q Consensus 438 ~~-L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~ 516 (776)
++ |++|++++|+ ++ .+|. .+...
T Consensus 376 ~~~L~~L~Ls~N~-----------------------------------l~-~lp~-~~~~~------------------- 399 (636)
T 4eco_A 376 TEQVENLSFAHNK-----------------------------------LK-YIPN-IFDAK------------------- 399 (636)
T ss_dssp CTTCCEEECCSSC-----------------------------------CS-SCCS-CCCTT-------------------
T ss_pred cccCcEEEccCCc-----------------------------------Cc-ccch-hhhhc-------------------
Confidence 33 4444444433 33 2222 11000
Q ss_pred CCCCCcEEEccCCccccCCCcccc-------CCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccc
Q 047152 517 LPSNATSLNLSKNKFSGSISFLCS-------LSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGF 589 (776)
Q Consensus 517 ~~~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 589 (776)
.+.+|++|++++|++++.+|..+. .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~ 478 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLK 478 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhc
Confidence 012455555555555555555444 5678899999999998433344556889999999999988 55554322
Q ss_pred cCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhh--ccccCCEEECcCCcccCcCcccccCcCCCCeeeC-
Q 047152 590 LHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIM--DLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDL- 666 (776)
Q Consensus 590 l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L- 666 (776)
... .....+++|++|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..++.+++|++|+|
T Consensus 479 ~~~------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 479 DEN------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp ETT------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred ccc------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 110 00123346689999999999 7888887 99999999999999997 8999999999999999
Q ss_pred -----cCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCC
Q 047152 667 -----SRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCG 721 (776)
Q Consensus 667 -----s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~ 721 (776)
++|++.+.+|..+.++++|++|++++|++ +.+|.. ....+..+.+++||..|-
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISI 602 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEE
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccc
Confidence 56889999999999999999999999999 789976 347888999999998884
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-45 Score=427.78 Aligned_cols=384 Identities=19% Similarity=0.235 Sum_probs=248.0
Q ss_pred CccccCcchhhcCCCCCCEEEccCCCCCC------------------Cchhhc--ccCCCcEEeccCCcCCCccchHHhh
Q 047152 275 NQLQGSIPEAFGRMVSLRYLDLSSNELRG------------------IPKFLG--NMCGLKILYLSGKELKGQLSEFIQD 334 (776)
Q Consensus 275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------------------ip~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~ 334 (776)
|++++ +|..++++++|++|+|++|.+++ +|..++ ++++|++|++++|.+.+.+|..+..
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 55555 56666666666666666666666 565555 6666666666666666666655655
Q ss_pred ccCCCcCCCccEEEccccc-ccc-cCCC-ccC-------CCCCCEEeccCccccccchh--cccCCCCCcEEECCCcccc
Q 047152 335 LSSGCTKNSLEWLHLSSNE-ITG-SMPN-LGE-------FSSLKQLNLENNLLNGTIHK--SIGQLFKLEMLKLNGNSLG 402 (776)
Q Consensus 335 l~~~~~~~~L~~L~L~~n~-l~~-~~~~-l~~-------l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~N~l~ 402 (776)
++ +|++|+|++|+ +++ .+|. ++. +++|++|++++|.++ .+|. .++.+++|+.|++++|+++
T Consensus 514 L~------~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 514 LP------ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp CS------SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred CC------CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 55 56666666665 554 3332 222 236666666666665 5555 5566666666666666655
Q ss_pred ccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCC-CcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcc
Q 047152 403 GVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQ-LNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLS 481 (776)
Q Consensus 403 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~ 481 (776)
.+| .+..+++|+.|++++|+++ .+|..+..+++ |+.|++++|++. .+|.++.... .++|+.|+++
T Consensus 587 -~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~---------~~~L~~L~Ls 652 (876)
T 4ecn_A 587 -HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS---------VYVMGSVDFS 652 (876)
T ss_dssp -BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC---------SSCEEEEECC
T ss_pred -cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc---------cCCCCEEECc
Confidence 444 3555566666666666655 45555555555 555555555554 3343222111 1235555555
Q ss_pred cccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCCh
Q 047152 482 SNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPD 561 (776)
Q Consensus 482 ~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 561 (776)
+|++.|.+|....... .....+|+.|++++|+++...+..+..+++|+.|+|++|+++ .+|.
T Consensus 653 ~N~l~g~ip~l~~~l~-----------------~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMD-----------------DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp SSCTTTTSSSCSSCTT-----------------TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred CCcCCCccccchhhhc-----------------cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 5555544443110000 001247888888888888655555667888999999999888 6666
Q ss_pred hhhCC--------CCCcEEeccCCcccccCCcccc--ccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhh
Q 047152 562 CWFQF--------DSLVILNLANNNFFGKIPNSMG--FLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEI 631 (776)
Q Consensus 562 ~~~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 631 (776)
.+... ++|+.|+|++|+++ .+|..+. .+++| +.|+|++|++++ +|..+
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L--------------------~~L~Ls~N~L~~-lp~~l 772 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL--------------------SNMDVSYNCFSS-FPTQP 772 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC--------------------CEEECCSSCCSS-CCCGG
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc--------------------CEEEeCCCCCCc-cchhh
Confidence 54432 28889999999888 6777665 56655 789999999997 89999
Q ss_pred hccccCCEEECcC------CcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCC-c
Q 047152 632 MDLVGLVALNLSR------NNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGT-Q 704 (776)
Q Consensus 632 ~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~-~ 704 (776)
+.+++|+.|+|++ |++.+.+|..++++++|+.|+|++|++ +.+|..+. ++|+.||+++|++...-+... .
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 9999999999976 888999999999999999999999999 78998876 699999999999976544221 1
Q ss_pred ccccccccccCCCCC--CCCC
Q 047152 705 LQSFNELVYAGNPEL--CGLP 723 (776)
Q Consensus 705 ~~~~~~~~~~gN~~l--c~~~ 723 (776)
........+.+|+.. +||+
T Consensus 850 ~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 850 YIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp HHHTTCCEEECCTTSEEESCG
T ss_pred cccchheeecCCCccccCCCC
Confidence 112233445566544 4665
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.5e-43 Score=407.96 Aligned_cols=516 Identities=20% Similarity=0.159 Sum_probs=375.5
Q ss_pred CCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHh
Q 047152 128 SIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQL 207 (776)
Q Consensus 128 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 207 (776)
.+|..+. +++++|||++|+|++..|.+|+++++|++|+|++|++.. ..+..|+++++|++|+|++|++++++ +..
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N~l~~l~--~~~ 119 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLA--LGA 119 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEEC--GGG
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCCcCCCCC--HHH
Confidence 4676553 589999999999997777899999999999999999975 45567999999999999999999864 367
Q ss_pred hcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCC-CchhhHhhcCCCCcCEEEccCCccccCcchhhc
Q 047152 208 LSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN-SVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFG 286 (776)
Q Consensus 208 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~ 286 (776)
|+++++|++|++++|++++..+..|+++ ++|++|++++|.+.+ ..|..+..+++ |++|++++|++++..+..+.
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L---~~L~~L~Ls~N~l~~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNLIQSFKLPEYFSNLTN--LEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTC---TTCCEEECCSSCCCCCCCCGGGGGCTT--CCEEECCSSCCCEECGGGGH
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcC---cccCeeccccCccccCCCchhhccchh--hhhhcccCcccccccccccc
Confidence 8999999999999999999888888888 999999999999976 46788888888 99999999999988888776
Q ss_pred CCCC----CCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCc-cchHHhhccCCCcCCCccEEEccccccccc----
Q 047152 287 RMVS----LRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQ-LSEFIQDLSSGCTKNSLEWLHLSSNEITGS---- 357 (776)
Q Consensus 287 ~l~~----L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~---- 357 (776)
.+.+ ...++++.|.++.++........++.+++.+|..... .+..+..+. .++...+..+.....
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~------~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA------GLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTT------TCEEEEEEEECCTTSCCCS
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCc------ccccccccccccccccccc
Confidence 5544 3478899999988776666666778888888876543 334455555 666666544332211
Q ss_pred --CC-CccCCCCCCEEeccCccccc---cchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecC
Q 047152 358 --MP-NLGEFSSLKQLNLENNLLNG---TIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFS 431 (776)
Q Consensus 358 --~~-~l~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 431 (776)
.. .+.....+...++..+.... ..+..+....+++.+++.++.+.... .+.....++.|++.+|.+.....
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---GGGSCCCCSEEEEESCEESSCCC
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc---ccccchhhhhhhcccccccCcCc
Confidence 11 13444555555554443322 22333455566777777777664332 24555667777777766553222
Q ss_pred CCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCccc
Q 047152 432 HDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFE 511 (776)
Q Consensus 432 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~ 511 (776)
. ... .++.+++..|...+..+. .....++.+++++|.+.
T Consensus 346 ~---~l~-----------------------------------~L~~l~l~~n~~~~~~~~---~~l~~L~~L~ls~n~l~ 384 (635)
T 4g8a_A 346 L---KLK-----------------------------------SLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLS 384 (635)
T ss_dssp C---BCT-----------------------------------TCCEEEEESCCSCCBCCC---CBCTTCCEEECCSSCCB
T ss_pred c---cch-----------------------------------hhhhcccccccCCCCccc---ccccccccchhhccccc
Confidence 1 122 344455555544332221 11222355666666554
Q ss_pred cc--CCC---CCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCC-hhhhCCCCCcEEeccCCcccccCCc
Q 047152 512 GP--IPP---LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLP-DCWFQFDSLVILNLANNNFFGKIPN 585 (776)
Q Consensus 512 g~--~p~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~ 585 (776)
.. .+. ...+++.+++..|.+....+ .+..+++|+.+++++|+.....+ ..+..+++++.++++.|.+.+..|.
T Consensus 385 ~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~ 463 (635)
T 4g8a_A 385 FKGCCSQSDFGTISLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463 (635)
T ss_dssp EEEECCHHHHSCSCCCEEECCSCSEEEECS-CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred cccccccchhhhhhhhhhhccccccccccc-cccccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence 32 221 14567777777777665433 45557777777777776665444 3466777777777777777777776
Q ss_pred cccccCCCcEEecCCCcccccccccccccEEEccCCCC-ccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCee
Q 047152 586 SMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKL-GGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFL 664 (776)
Q Consensus 586 ~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 664 (776)
.+..++.+ ++|++++|++ .+.+|..|..+++|++|+|++|++++.+|..|+++++|++|
T Consensus 464 ~~~~~~~L--------------------~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 464 IFNGLSSL--------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp TTTTCTTC--------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccchhh--------------------hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 66666555 7889999974 45678899999999999999999999999999999999999
Q ss_pred eCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-Ccc-cccccccccCCCCCCCCCC
Q 047152 665 DLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQL-QSFNELVYAGNPELCGLPL 724 (776)
Q Consensus 665 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~-~~~~~~~~~gN~~lc~~~l 724 (776)
+|++|++++..|..|..+++|++||+++|++++..|.. ..+ .++..+.++|||+.|+|.+
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999999999999999999999999988865 223 5788899999999999864
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.2e-44 Score=409.35 Aligned_cols=491 Identities=22% Similarity=0.204 Sum_probs=295.3
Q ss_pred EEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCE
Q 047152 86 NKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165 (776)
Q Consensus 86 ~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 165 (776)
+.+++++ +++++ +|..+. ++|++|++++|.+++. .|..|.++++|++|+|++|++++..|..|+++++|++
T Consensus 34 ~~l~ls~-----~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 34 SMVDYSN-----RNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp CEEECTT-----SCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cEEEcCC-----CCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 6777777 45553 555443 6788888888888764 5567788888888888888887776777778888888
Q ss_pred EeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEE
Q 047152 166 LDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVID 245 (776)
Q Consensus 166 L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~ 245 (776)
|++++|++.. .+.. .+++|++|++++|.+++++ ++..++++++|++|++++|.+++. .+..+..+ +|++|+
T Consensus 105 L~Ls~N~l~~--lp~~--~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L-~L~~L~ 175 (562)
T 3a79_B 105 LDVSHNRLQN--ISCC--PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL-HLSCIL 175 (562)
T ss_dssp EECTTSCCCE--ECSC--CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS-CEEEEE
T ss_pred EECCCCcCCc--cCcc--ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccccC---chhhhhhc-eeeEEE
Confidence 8888887752 2222 6667777777777666542 234566666666666666665542 23333111 225555
Q ss_pred cCCCCC--CCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCc
Q 047152 246 LTENNL--TNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKE 323 (776)
Q Consensus 246 Ls~n~l--~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~ 323 (776)
+++|.+ ++..|..+..+... .-.++++.|.+.+.++. ..+..+++|+.+++++|.
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~-~l~l~l~~n~~~~~~~~----------------------~~~~~l~~L~~L~l~~n~ 232 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTT-VLHLVFHPNSLFSVQVN----------------------MSVNALGHLQLSNIKLND 232 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEE-EEEEEECSSSCCCCCCE----------------------EEESSEEEEEEEEEECCS
T ss_pred eecccccccccCcccccccCcc-eEEEEecCccchhhhhh----------------------hcccccceEEEecccccc
Confidence 555555 44444443333210 11233344443332221 123334444444444443
Q ss_pred CC----CccchHHhhccCCCcCCCccEEEcccccccccC----CCccCCCCCCEEeccCccccccchhcc-----cCCCC
Q 047152 324 LK----GQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSM----PNLGEFSSLKQLNLENNLLNGTIHKSI-----GQLFK 390 (776)
Q Consensus 324 l~----~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~ 390 (776)
.. ......+..++ +|+.+++.++.+.+.. +.....++|++|++++|.++|.+|..+ ..++.
T Consensus 233 ~~~~~l~~~~~~l~~l~------~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~ 306 (562)
T 3a79_B 233 ENCQRLMTFLSELTRGP------TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306 (562)
T ss_dssp TTHHHHHHHHHHHHSCS------SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred cccchHHHHHHHHhccC------cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchh
Confidence 11 00111222232 4444444444333211 001112345555555555555444444 33334
Q ss_pred CcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhh
Q 047152 391 LEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWD 470 (776)
Q Consensus 391 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~ 470 (776)
|+.++++.|.+ .+|...+..+ +
T Consensus 307 L~~~~~~~~~~--~~p~~~~~~~-------------------------------------------------------~- 328 (562)
T 3a79_B 307 LMIEHVKNQVF--LFSKEALYSV-------------------------------------------------------F- 328 (562)
T ss_dssp EEEEEEEECCC--SSCHHHHHHH-------------------------------------------------------H-
T ss_pred eehhhccccee--ecChhhhhhh-------------------------------------------------------h-
Confidence 44444444433 2222111111 0
Q ss_pred ccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEEC
Q 047152 471 LTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDL 550 (776)
Q Consensus 471 ~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 550 (776)
...+++.|++++|.+... ..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 329 ~~~~L~~L~l~~n~~~~~------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 384 (562)
T 3a79_B 329 AEMNIKMLSISDTPFIHM------------------------VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384 (562)
T ss_dssp HTCCCSEEEEESSCCCCC------------------------CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred ccCcceEEEccCCCcccc------------------------cCccCCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence 001233344443333210 01123567888888888888888888888999999999
Q ss_pred cCCcccc--cCChhhhCCCCCcEEeccCCcccccCCcc-ccccCCCcEEecCCCcccccccccccccEEEccCCCCccCC
Q 047152 551 SNNLLSG--KLPDCWFQFDSLVILNLANNNFFGKIPNS-MGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGV 627 (776)
Q Consensus 551 s~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 627 (776)
++|++++ .+|..+.++++|++|++++|++++.+|.. +..+++| ++|++++|++++.+
T Consensus 385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L--------------------~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI--------------------LVLNLSSNMLTGSV 444 (562)
T ss_dssp CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC--------------------CEEECCSSCCCGGG
T ss_pred CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC--------------------CEEECCCCCCCcch
Confidence 9999986 34567899999999999999999856653 5555555 78999999999888
Q ss_pred chhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCcc-CcCCCCCCeeeCCCCcceecCCCCCccc
Q 047152 628 PKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSS-LSQLSGLSVMDLSYNNLSGKIPLGTQLQ 706 (776)
Q Consensus 628 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 706 (776)
|..+. ++|++|+|++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++|++|++++|+++|.+|....+.
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~ 520 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence 87665 78999999999999 78988889999999999999999 56665 9999999999999999999887533222
Q ss_pred cc---ccccccCCCCCCCCCCCCCCCC
Q 047152 707 SF---NELVYAGNPELCGLPLRNKCPD 730 (776)
Q Consensus 707 ~~---~~~~~~gN~~lc~~~l~~~c~~ 730 (776)
.+ ....+. +..-|+++....|..
T Consensus 521 ~~~~~~~~~~~-~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 521 EWINKHSGVVR-NSAGSVAPDSAKCSG 546 (562)
T ss_dssp HHHHHTTTTEE-CSSSSBCSSSSCBSS
T ss_pred HHHHhcCCccc-ccccCCCCCCCccCC
Confidence 11 111121 223346666667865
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.8e-42 Score=393.15 Aligned_cols=456 Identities=21% Similarity=0.245 Sum_probs=296.7
Q ss_pred CCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCC
Q 047152 185 LSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSS 264 (776)
Q Consensus 185 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 264 (776)
+...+++++++|+++.++ ..+. ++|++|++++|.+++..+..+.++ ++|++|++++|++++..|..+.++++
T Consensus 30 ~~~~~~l~ls~~~L~~ip---~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVP---KDLP--PRTKALSLSQNSISELRMPDISFL---SELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp ---CCEEECTTSCCCSCC---TTSC--TTCCEEECCSSCCCCCCGGGTTTC---TTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cCCCcEEEcCCCCCccCC---CCCC--CCcCEEECCCCCccccChhhhccC---CCccEEECCCCCCCcCCHHHhCCCCC
Confidence 334477888888877753 2222 677777777777777777777776 77777777777777666666777777
Q ss_pred CCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCC--chhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCC
Q 047152 265 SLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI--PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKN 342 (776)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~i--p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~ 342 (776)
|++|++++|+++ .+|.. .+++|++|++++|+++++ |..++++++|++|++++|.+++. .+..++
T Consensus 102 --L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~------ 167 (562)
T 3a79_B 102 --LEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVA------ 167 (562)
T ss_dssp --CCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGT------
T ss_pred --CCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhh------
Confidence 777777777776 34444 677777777777777763 36677777777777777776652 233333
Q ss_pred Cc--cEEEcccccc--cccCCC-ccCCC-CCCEEeccCccccccchh-cccCCCCCcEEECCCcc-----ccccccHHhh
Q 047152 343 SL--EWLHLSSNEI--TGSMPN-LGEFS-SLKQLNLENNLLNGTIHK-SIGQLFKLEMLKLNGNS-----LGGVISEALF 410 (776)
Q Consensus 343 ~L--~~L~L~~n~l--~~~~~~-l~~l~-~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~N~-----l~~~~~~~~~ 410 (776)
+| ++|++++|.+ ++..|. +..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|. +.+.++ .+
T Consensus 168 ~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l 245 (562)
T 3a79_B 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--EL 245 (562)
T ss_dssp TSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HH
T ss_pred hceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HH
Confidence 34 7777777766 555444 33322 111446666666654433 34456667777776664 222222 35
Q ss_pred hCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCC
Q 047152 411 SNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVP 490 (776)
Q Consensus 411 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p 490 (776)
..+++|+.++++++.+.+... .. ++...+ ..++++|++++|.++|.+|
T Consensus 246 ~~l~~L~~L~L~~~~l~~~~~------------------------~~------~~~~~~--~~~L~~L~l~~n~l~~~ip 293 (562)
T 3a79_B 246 TRGPTLLNVTLQHIETTWKCS------------------------VK------LFQFFW--PRPVEYLNIYNLTITERID 293 (562)
T ss_dssp HSCSSCEEEEEEEEEECHHHH------------------------HH------HHHHHT--TSSEEEEEEEEEEECSCCC
T ss_pred hccCcceEEEecCCcCcHHHH------------------------HH------HHHhhh--cccccEEEEeccEeecccc
Confidence 566666666666555432110 00 000110 1245566666666665555
Q ss_pred cccc----cccCCCCeEeccCCcccccCCCC-------CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccC
Q 047152 491 DLSL----RFDISGPGIDISSNHFEGPIPPL-------PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKL 559 (776)
Q Consensus 491 ~~~~----~~~~~l~~l~l~~n~l~g~~p~~-------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 559 (776)
...+ .....+..++++.+.+ .+|.. ..++++|++++|.+..... ...+++|++|++++|++++.+
T Consensus 294 ~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 294 REEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp CCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTT
T ss_pred chhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccch
Confidence 5211 1111112233333333 22210 1457788888877754321 245677888888888888777
Q ss_pred ChhhhCCCCCcEEeccCCccccc--CCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCch-hhhcccc
Q 047152 560 PDCWFQFDSLVILNLANNNFFGK--IPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPK-EIMDLVG 636 (776)
Q Consensus 560 p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~ 636 (776)
|..+.++++|++|++++|++++. +|..+..+++| ++|++++|++++.+|. .+..+++
T Consensus 370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L--------------------~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL--------------------ETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC--------------------CEEECTTSCCBSCCSSCCCCCCTT
T ss_pred hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC--------------------CEEECCCCcCCCccChhhhcCccc
Confidence 77778888888888888887752 23445555555 8899999999985665 4888999
Q ss_pred CCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC--Cccccccccccc
Q 047152 637 LVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG--TQLQSFNELVYA 714 (776)
Q Consensus 637 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~ 714 (776)
|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+..+..+.++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence 99999999999988887665 79999999999998 78888889999999999999999 56753 456778888999
Q ss_pred CCCCCCCCCC
Q 047152 715 GNPELCGLPL 724 (776)
Q Consensus 715 gN~~lc~~~l 724 (776)
+||+.|+|++
T Consensus 506 ~N~~~c~c~~ 515 (562)
T 3a79_B 506 DNPWDCTCPG 515 (562)
T ss_dssp SCCBCCCHHH
T ss_pred CCCcCCCcch
Confidence 9999998864
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.4e-42 Score=377.64 Aligned_cols=416 Identities=25% Similarity=0.289 Sum_probs=219.2
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCC
Q 047152 109 LKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSL 188 (776)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L 188 (776)
.+.++|++|++++|.+ + .+|..++++++|++|++++|++.|.+|.+++++++|+++++.+|.. .++
T Consensus 8 ~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l 73 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQA 73 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTC
T ss_pred cccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCC
Confidence 3568899999999999 4 4899999999999999999999999999999999888777766532 456
Q ss_pred cEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcC
Q 047152 189 IYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD 268 (776)
Q Consensus 189 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~ 268 (776)
++|++++|.+++++.+ .++|++|++++|.+++ +|.. . ++|++|++++|++++ ++
T Consensus 74 ~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~-lp~~---~---~~L~~L~l~~n~l~~-l~------------ 127 (454)
T 1jl5_A 74 HELELNNLGLSSLPEL------PPHLESLVASCNSLTE-LPEL---P---QSLKSLLVDNNNLKA-LS------------ 127 (454)
T ss_dssp SEEECTTSCCSCCCSC------CTTCSEEECCSSCCSS-CCCC---C---TTCCEEECCSSCCSC-CC------------
T ss_pred CEEEecCCccccCCCC------cCCCCEEEccCCcCCc-cccc---c---CCCcEEECCCCccCc-cc------------
Confidence 7777777777765432 2466666666666665 3321 1 455556665555543 11
Q ss_pred EEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEE
Q 047152 269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH 348 (776)
Q Consensus 269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 348 (776)
.. .++|++|++++|+++++| .++++++|++|++++|.+++ +|..+ . +|++|+
T Consensus 128 --------------~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~------~L~~L~ 179 (454)
T 1jl5_A 128 --------------DL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---P------SLEFIA 179 (454)
T ss_dssp --------------SC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---T------TCCEEE
T ss_pred --------------CC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---c------cccEEE
Confidence 10 134555555555555554 35555555555555555543 22111 1 566666
Q ss_pred cccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce
Q 047152 349 LSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL 428 (776)
Q Consensus 349 L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 428 (776)
+++|++++ +|.++.+++|++|++++|.+++ +|.. .++|++|++++|.++ .+|. +..+++|++|++++|++++
T Consensus 180 L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 180 AGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS
T ss_pred CcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc
Confidence 66666665 3456666677777777776664 3322 246677777777665 4443 5666666666666666553
Q ss_pred ecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCC
Q 047152 429 EFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSN 508 (776)
Q Consensus 429 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n 508 (776)
. +.. .++|+.|++++|+++
T Consensus 252 l-~~~--------------------------------------~~~L~~L~l~~N~l~---------------------- 270 (454)
T 1jl5_A 252 L-PDL--------------------------------------PPSLEALNVRDNYLT---------------------- 270 (454)
T ss_dssp C-CSC--------------------------------------CTTCCEEECCSSCCS----------------------
T ss_pred c-ccc--------------------------------------ccccCEEECCCCccc----------------------
Confidence 1 100 123444444444443
Q ss_pred cccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCC-CCCcEEeccCCcccccCCccc
Q 047152 509 HFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQF-DSLVILNLANNNFFGKIPNSM 587 (776)
Q Consensus 509 ~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~ 587 (776)
+ +|..+++|++|++++|++++... ..++|++|++++|++++ ++ .+ ++|++|++++|++++ +|..
T Consensus 271 ---~-l~~~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~- 335 (454)
T 1jl5_A 271 ---D-LPELPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL- 335 (454)
T ss_dssp ---C-CCCCCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC-
T ss_pred ---c-cCcccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc-
Confidence 2 33334678888888888887321 12678999999999885 22 23 588999999998885 5543
Q ss_pred cccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccC--cCcccccCcCCCCeee
Q 047152 588 GFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTG--QITPKIGQLKSLDFLD 665 (776)
Q Consensus 588 ~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ 665 (776)
+++ |++|++++|+++ .+|. .+++|++|++++|++++ .+|.+++.+
T Consensus 336 --~~~--------------------L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L------- 382 (454)
T 1jl5_A 336 --PPR--------------------LERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL------- 382 (454)
T ss_dssp --CTT--------------------CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE-------
T ss_pred --CCc--------------------CCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh-------
Confidence 233 478888999888 5665 47889999999999987 677665533
Q ss_pred CcCceeeecCCccCcCCCCCCeeeCCCCccee--cCCCCCcccccccccccCCCC
Q 047152 666 LSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSG--KIPLGTQLQSFNELVYAGNPE 718 (776)
Q Consensus 666 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~iP~~~~~~~~~~~~~~gN~~ 718 (776)
+.|++.|.+|.. +++|++|++++|+++| .+|. ++..+.+.+|..
T Consensus 383 -~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~ 428 (454)
T 1jl5_A 383 -RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERV 428 (454)
T ss_dssp -ECCC--------------------------------------------------
T ss_pred -hhcccccccccc---cCcCCEEECCCCcCCccccchh-----hHhheeCcCccc
Confidence 346777777764 4678888888888887 6663 344445555533
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-39 Score=361.48 Aligned_cols=144 Identities=25% Similarity=0.190 Sum_probs=127.7
Q ss_pred CCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCC
Q 047152 542 SNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSN 621 (776)
Q Consensus 542 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N 621 (776)
.++|++|++++|.+++..|..+..+++|++|++++|++++..|..|..+++| ++|++++|
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------~~L~Ls~N 333 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL--------------------LKLNLSQN 333 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------CEEECCSS
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC--------------------CEEECCCC
Confidence 3578888888888888888888888999999999999988888888777776 67889999
Q ss_pred CCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152 622 KLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 622 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
++++..|..++++++|++|+|++|++++..|..++.+++|++|++++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99888889999999999999999999988899999999999999999999987777889999999999999999999996
Q ss_pred CCcc
Q 047152 702 GTQL 705 (776)
Q Consensus 702 ~~~~ 705 (776)
...+
T Consensus 414 ~~~l 417 (455)
T 3v47_A 414 IDYL 417 (455)
T ss_dssp THHH
T ss_pred chHH
Confidence 5443
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.4e-41 Score=352.16 Aligned_cols=293 Identities=29% Similarity=0.441 Sum_probs=227.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCC--ccceeeCCCC--CcEEEEECCCCCCCCCCCce--eccccc
Q 047152 35 RCIDEEREALLTFKASLVDESGILSSWRREDEKRDCCK--WTGVGCSKRT--GHVNKLDLQPIGFDSFPLRG--KITPAL 108 (776)
Q Consensus 35 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~l~g--~~~~~l 108 (776)
.|.++|++||++||+++.+|. .+.+|. .+.+||. |.||+|+..+ ++|++|++++ +.+.| .+|+.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-----~~l~~~~~~~~~l 72 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-----LNLPKPYPIPSSL 72 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-----CCCSSCEECCGGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC-----CCccCCcccChhH
Confidence 599999999999999998886 789997 4678998 9999998655 8999999999 67888 889999
Q ss_pred cCCCCCCEEeCCC-CCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152 109 LKLQHLTYLDLSR-NNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS 187 (776)
Q Consensus 109 ~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 187 (776)
.++++|++|++++ |.+.+. +|..++++++|++|++++|++++.+|..|+++++|++|++++|.+.+ ..+..++++++
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~ 150 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPN 150 (313)
T ss_dssp GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTT
T ss_pred hCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCC
Confidence 9999999999995 888875 89999999999999999999998899889899999999998888764 33444444444
Q ss_pred CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCC-CccEEEcCCCCCCCCchhhHhhcCCCC
Q 047152 188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSN-SLEVIDLTENNLTNSVYPWLFNVSSSL 266 (776)
Q Consensus 188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~ 266 (776)
|++|++ ++|++++.+|..+..+ + +|++|++++|++++.+|..+..++
T Consensus 151 L~~L~L--------------------------~~N~l~~~~p~~l~~l---~~~L~~L~L~~N~l~~~~~~~~~~l~--- 198 (313)
T 1ogq_A 151 LVGITF--------------------------DGNRISGAIPDSYGSF---SKLFTSMTISRNRLTGKIPPTFANLN--- 198 (313)
T ss_dssp CCEEEC--------------------------CSSCCEEECCGGGGCC---CTTCCEEECCSSEEEEECCGGGGGCC---
T ss_pred CCeEEC--------------------------cCCcccCcCCHHHhhh---hhcCcEEECcCCeeeccCChHHhCCc---
Confidence 444444 4444444455555555 3 566666666666666666555553
Q ss_pred cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccE
Q 047152 267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW 346 (776)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~ 346 (776)
|+.|++++|++++.+|..+..+++|++|++++|.+++.+..+..+++|++|++++|.+++.+|..+..++ +|++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~------~L~~ 272 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK------FLHS 272 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT------TCCE
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCc------CCCE
Confidence 6777777777777777778888888888888888877444577777888888888888777777777776 7777
Q ss_pred EEcccccccccCCCccCCCCCCEEeccCcc
Q 047152 347 LHLSSNEITGSMPNLGEFSSLKQLNLENNL 376 (776)
Q Consensus 347 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~ 376 (776)
|++++|++++.+|....+++|+.+++++|.
T Consensus 273 L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 273 LNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred EECcCCcccccCCCCccccccChHHhcCCC
Confidence 777777777777776777777777777776
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-39 Score=357.74 Aligned_cols=407 Identities=23% Similarity=0.281 Sum_probs=199.3
Q ss_pred CcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCC-------------CEEecCCCCC
Q 047152 83 GHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKL-------------SYLGLSSAEF 149 (776)
Q Consensus 83 ~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L-------------~~L~Ls~n~l 149 (776)
.+++++++++ +.+ |.+|++++++++|++|++++|.+.+. +|..++++++| ++|++++|.+
T Consensus 11 ~~L~~L~l~~-----n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 11 TFLQEPLRHS-----SNL-TEMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred ccchhhhccc-----Cch-hhCChhHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 4788899998 677 89999999999999999999999885 99999998875 7888888877
Q ss_pred CCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCc
Q 047152 150 AGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP 229 (776)
Q Consensus 150 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 229 (776)
++ +|.. .++|++|++++|.+.+ .+. ..++|++|++++|.+++++.++ ++|++|++++|++++ +|
T Consensus 84 ~~-lp~~---~~~L~~L~l~~n~l~~--lp~---~~~~L~~L~l~~n~l~~l~~~~------~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 84 SS-LPEL---PPHLESLVASCNSLTE--LPE---LPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp SC-CCSC---CTTCSEEECCSSCCSS--CCC---CCTTCCEEECCSSCCSCCCSCC------TTCCEEECCSSCCSS-CC
T ss_pred cc-CCCC---cCCCCEEEccCCcCCc--ccc---ccCCCcEEECCCCccCcccCCC------CCCCEEECcCCCCCC-Cc
Confidence 74 4432 3677777777777753 222 2366777777777766643221 456666666666655 33
Q ss_pred hhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhc
Q 047152 230 SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLG 309 (776)
Q Consensus 230 ~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~ 309 (776)
.++++ ++|++|++++|++++ +| .. ..+|++|++++|.++++| .++
T Consensus 148 -~~~~l---~~L~~L~l~~N~l~~-lp--------------------------~~---~~~L~~L~L~~n~l~~l~-~~~ 192 (454)
T 1jl5_A 148 -ELQNS---SFLKIIDVDNNSLKK-LP--------------------------DL---PPSLEFIAAGNNQLEELP-ELQ 192 (454)
T ss_dssp -CCTTC---TTCCEEECCSSCCSC-CC--------------------------CC---CTTCCEEECCSSCCSSCC-CCT
T ss_pred -ccCCC---CCCCEEECCCCcCcc-cC--------------------------CC---cccccEEECcCCcCCcCc-ccc
Confidence 34444 555555555555543 22 21 135566666666665555 355
Q ss_pred ccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCC
Q 047152 310 NMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLF 389 (776)
Q Consensus 310 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 389 (776)
.+++|++|++++|.+++. |.. .+ +|++|++++|.++ .+|.++.+++|++|++++|++++ +|.. ++
T Consensus 193 ~l~~L~~L~l~~N~l~~l-~~~---~~------~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~ 257 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKKL-PDL---PL------SLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PP 257 (454)
T ss_dssp TCTTCCEEECCSSCCSSC-CCC---CT------TCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CT
T ss_pred CCCCCCEEECCCCcCCcC-CCC---cC------cccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc---cc
Confidence 666666666666665542 211 11 6788888888777 45567788888888888888875 3432 36
Q ss_pred CCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhh
Q 047152 390 KLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFW 469 (776)
Q Consensus 390 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~ 469 (776)
+|++|++++|++++ +|. ..++|++|++++|++++... +
T Consensus 258 ~L~~L~l~~N~l~~-l~~----~~~~L~~L~ls~N~l~~l~~----------------------~--------------- 295 (454)
T 1jl5_A 258 SLEALNVRDNYLTD-LPE----LPQSLTFLDVSENIFSGLSE----------------------L--------------- 295 (454)
T ss_dssp TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSEESC----------------------C---------------
T ss_pred ccCEEECCCCcccc-cCc----ccCcCCEEECcCCccCcccC----------------------c---------------
Confidence 78888888888765 343 13566777776666653110 0
Q ss_pred hccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEE
Q 047152 470 DLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLD 549 (776)
Q Consensus 470 ~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 549 (776)
.+++++|++++|++ ++.. ...++|++|+
T Consensus 296 --~~~L~~L~l~~N~l----------------------------------------------~~i~----~~~~~L~~L~ 323 (454)
T 1jl5_A 296 --PPNLYYLNASSNEI----------------------------------------------RSLC----DLPPSLEELN 323 (454)
T ss_dssp --CTTCCEEECCSSCC----------------------------------------------SEEC----CCCTTCCEEE
T ss_pred --CCcCCEEECcCCcC----------------------------------------------Cccc----CCcCcCCEEE
Confidence 01233333333333 2210 0013455555
Q ss_pred CcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCcc--CC
Q 047152 550 LSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGG--GV 627 (776)
Q Consensus 550 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~ 627 (776)
+++|++++ +|.. +++|++|++++|+++ .+|. .+++| ++|++++|++++ .+
T Consensus 324 Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L--------------------~~L~L~~N~l~~l~~i 375 (454)
T 1jl5_A 324 VSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNL--------------------KQLHVEYNPLREFPDI 375 (454)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTC--------------------CEEECCSSCCSSCCCC
T ss_pred CCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhc--------------------cEEECCCCCCCcCCCC
Confidence 55555553 3332 356666666666665 3443 12333 566677777766 55
Q ss_pred chhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeee--cCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152 628 PKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFG--GIPSSLSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 628 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
|..++.+ +.|++.|.+|.. +++|++||+++|++++ .+|.+ ++.|++.+|.+.+++|.
T Consensus 376 p~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 376 PESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp CTTCCEE--------ECCC---------------------------------------------------------
T ss_pred hHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 6554432 346666667653 4678888888888886 56644 45667888888877664
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.8e-38 Score=348.78 Aligned_cols=357 Identities=24% Similarity=0.269 Sum_probs=235.2
Q ss_pred CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCC-CccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcE
Q 047152 112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPI-PHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIY 190 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 190 (776)
++|++|+|++|.+++. .|..++++++|++|++++|.+.+.+ |..|.++++|++|++++|++.. ..+..++++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-ECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-cChhhccCcccCCE
Confidence 5666666666666653 4566666666666666666665444 3456666666666666666653 34455666666777
Q ss_pred EEccCCCCCCcchhhHh--hcCCCCCCEEEccCCCCCCCCchh-hhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152 191 LYLDLNDLSNFSNWVQL--LSKLHSLTTLSLYSCDLPPIIPSS-LLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV 267 (776)
Q Consensus 191 L~Ls~n~l~~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L 267 (776)
|++++|.+++. .+.. ++++++|++|++++|.+.+..|.. +.++ ++|++|++++|++.+..+..+..+....+
T Consensus 108 L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 108 LTLTQCNLDGA--VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM---RRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp EECTTSCCBTH--HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC---TTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred EeCCCCCCCcc--ccCcccccCcccCCEEECCCCccCccCcccccCCC---CcccEEeCCCCcccccChhhhhccccccc
Confidence 77766666652 2222 666667777777777766665554 5556 66777777777766666666665533336
Q ss_pred CEEEccCCccccCcchh--------hcCCCCCCEEEccCCCCCC-Cchhhccc---CCCcEEeccCCcCCCc--------
Q 047152 268 DRISLPSNQLQGSIPEA--------FGRMVSLRYLDLSSNELRG-IPKFLGNM---CGLKILYLSGKELKGQ-------- 327 (776)
Q Consensus 268 ~~L~L~~n~l~~~~p~~--------l~~l~~L~~L~L~~n~l~~-ip~~l~~l---~~L~~L~Ls~n~l~~~-------- 327 (776)
+.|++++|.+.+..+.. +..+++|++|++++|.+++ +|..+... ++|+.|++++|.+.+.
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 67777777666544332 2245667777777777766 55544433 6677777776644332
Q ss_pred --cchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCcccccc
Q 047152 328 --LSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGV 404 (776)
Q Consensus 328 --~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 404 (776)
.+..+..+. .++|++|++++|.+++..|. +..+++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 263 ~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 263 DPDNFTFKGLE----ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp CCCTTTTGGGT----TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cCccccccccc----ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc
Confidence 111222211 12688888888888877666 77788888888888888877777788888888888888888665
Q ss_pred ccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEccccc
Q 047152 405 ISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQ 484 (776)
Q Consensus 405 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~ 484 (776)
.+. .+..+++|++|++++|++++..+..+..+++|++|++++|++++..+. .+..+++|++|++++|.
T Consensus 339 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 339 DSR-MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG-----------IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CGG-GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-----------TTTTCTTCCEEECCSSC
T ss_pred Chh-HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh-----------HhccCCcccEEEccCCC
Confidence 554 677788888888888888877777788888888888888877643222 22334578888888888
Q ss_pred CcccCCc
Q 047152 485 MRGKVPD 491 (776)
Q Consensus 485 l~g~~p~ 491 (776)
+++.+|.
T Consensus 407 l~~~~~~ 413 (455)
T 3v47_A 407 WDCSCPR 413 (455)
T ss_dssp BCCCTTT
T ss_pred cccCCCc
Confidence 8888775
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3e-36 Score=333.06 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=116.0
Q ss_pred CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152 501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF 580 (776)
Q Consensus 501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (776)
+.+++++|++++..+..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|.+.
T Consensus 236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 236 TYFDCSVNPLTELDVSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp SEEECCSSCCSCCCCTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred CEEEeeCCcCCCcCHHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence 33444444444433334566777776654 35567777777777766 456778888888888877
Q ss_pred ccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCC
Q 047152 581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKS 660 (776)
Q Consensus 581 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 660 (776)
+.+|.. ..+|+.|+++++ ++|++|++++|++++ ++ ++++++|+.|++++|++++ ++.
T Consensus 300 ~~l~~~---~~~L~~L~l~~~---------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~ 356 (457)
T 3bz5_A 300 YLLDCQ---AAGITELDLSQN---------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSS 356 (457)
T ss_dssp CEEECT---TCCCSCCCCTTC---------TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTT
T ss_pred ceeccC---CCcceEechhhc---------ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccc
Confidence 777743 345555555443 678999999999997 43 8999999999999999986 356
Q ss_pred CCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC
Q 047152 661 LDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG 702 (776)
Q Consensus 661 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 702 (776)
|+.|++++|+++|. .++..|+.+++++|+++|.||..
T Consensus 357 L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 357 VGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 78889999999987 24567888999999999999964
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.4e-36 Score=331.78 Aligned_cols=366 Identities=19% Similarity=0.170 Sum_probs=194.9
Q ss_pred CCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCC
Q 047152 147 AEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP 226 (776)
Q Consensus 147 n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 226 (776)
....+..+..++++++|++|++++|.+.+ . +.++.+++|++|++++|.+++++ ++.+++|++|++++|.+++
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~-~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITD--M-TGIEKLTGLTKLICTSNNITTLD-----LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCC--C-TTGGGCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSC
T ss_pred cCcCcccccChhHcCCCCEEEccCCCccc--C-hhhcccCCCCEEEccCCcCCeEc-----cccCCCCCEEECcCCCCce
Confidence 33444555667778888888888887764 2 35777788888888888777742 6677777777777777766
Q ss_pred CCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC-Cc
Q 047152 227 IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IP 305 (776)
Q Consensus 227 ~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip 305 (776)
. + ++++ ++|++|++++|++++. + +..+++ |++|++++|++++. + ++.+++|++|++++|...+ +
T Consensus 100 ~-~--~~~l---~~L~~L~L~~N~l~~l-~--~~~l~~--L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~- 164 (457)
T 3bz5_A 100 L-D--VTPL---TKLTYLNCDTNKLTKL-D--VSQNPL--LTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL- 164 (457)
T ss_dssp C-C--CTTC---TTCCEEECCSSCCSCC-C--CTTCTT--CCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC-
T ss_pred e-e--cCCC---CcCCEEECCCCcCCee-c--CCCCCc--CCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc-
Confidence 4 2 4444 6666666666666542 2 444444 55555555555542 1 4445555555555553222 3
Q ss_pred hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcc
Q 047152 306 KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSI 385 (776)
Q Consensus 306 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 385 (776)
.+..+++|++|++++|.+++. | +..+++|+.|++++|++++. .+
T Consensus 165 -~~~~l~~L~~L~ls~n~l~~l-------------------------------~-l~~l~~L~~L~l~~N~l~~~---~l 208 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNKITEL-------------------------------D-VSQNKLLNRLNCDTNNITKL---DL 208 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCCCC-------------------------------C-CTTCTTCCEEECCSSCCSCC---CC
T ss_pred -ccccCCcCCEEECCCCcccee-------------------------------c-cccCCCCCEEECcCCcCCee---cc
Confidence 233444444444444444432 2 34444444444444444432 24
Q ss_pred cCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCC
Q 047152 386 GQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVP 465 (776)
Q Consensus 386 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p 465 (776)
+.+++|++|++++|++++ +| +..+++|++|++++|++++.. ...+.+|+.++++.|+
T Consensus 209 ~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~---------------- 265 (457)
T 3bz5_A 209 NQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD---------------- 265 (457)
T ss_dssp TTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC----------------
T ss_pred ccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC----------------
Confidence 444444455555554443 22 334444455555444444321 1122223333322221
Q ss_pred chhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCC-CCCCcEEEccCCccccCCCccccCCCC
Q 047152 466 NWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPL-PSNATSLNLSKNKFSGSISFLCSLSNR 544 (776)
Q Consensus 466 ~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~ 544 (776)
++.+++++|.+. |.+|.. +++|+.|++++|...+.+|. ..++
T Consensus 266 ---------L~~L~l~~n~~~-------------------------~~~~~~~l~~L~~L~Ls~n~~l~~l~~---~~~~ 308 (457)
T 3bz5_A 266 ---------LLEIDLTHNTQL-------------------------IYFQAEGCRKIKELDVTHNTQLYLLDC---QAAG 308 (457)
T ss_dssp ---------CSCCCCTTCTTC-------------------------CEEECTTCTTCCCCCCTTCTTCCEEEC---TTCC
T ss_pred ---------CCEEECCCCccC-------------------------CcccccccccCCEEECCCCcccceecc---CCCc
Confidence 222333333333 333321 34555555555554444432 1233
Q ss_pred ccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCc
Q 047152 545 LIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG 624 (776)
Q Consensus 545 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 624 (776)
|+.|++++| ++|++|++++|++++. + ++.+++| +.||+++|+++
T Consensus 309 L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L--------------------~~L~l~~N~l~ 352 (457)
T 3bz5_A 309 ITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKL--------------------KSLSCVNAHIQ 352 (457)
T ss_dssp CSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTC--------------------SEEECCSSCCC
T ss_pred ceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcC--------------------cEEECCCCCCC
Confidence 444444433 4666777777776652 2 4545444 56677777776
Q ss_pred cCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCc
Q 047152 625 GGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLS 680 (776)
Q Consensus 625 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 680 (776)
+ ++.|..|++++|+++|. +.+..|+.+++++|+++|.+|..+.
T Consensus 353 ~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 353 D--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp B--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred C--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 4 23455566777777764 3556677778888888888876553
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-36 Score=335.43 Aligned_cols=345 Identities=18% Similarity=0.186 Sum_probs=199.4
Q ss_pred EEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEe
Q 047152 293 YLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLN 371 (776)
Q Consensus 293 ~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~ 371 (776)
.++.+++.++.+|..+. +++++|++++|.+++..+..|..++ +|++|+|++|.+++..|. +.++++|++|+
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 86 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFP------HLEELELNENIVSAVEPGAFNNLFNLRTLG 86 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCT------TCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCC------CCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence 45555555555554432 3555666666665555555555555 566666666666655444 56666666666
Q ss_pred ccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcCCC
Q 047152 372 LENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCKMG 451 (776)
Q Consensus 372 Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 451 (776)
+++|.+++..+..|..+++|++|++++|.+++..+. .|..+++|++|++++|.+++..+..+..+.+|+.|++++|+++
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 666666654445556666666666666666555444 4666666666666666666665555655555555555555554
Q ss_pred CCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCcc
Q 047152 452 PRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKF 531 (776)
Q Consensus 452 ~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l 531 (776)
+..+..+ ..+ ++|+.|++++|.+
T Consensus 166 ~~~~~~l-----------~~l----------------------------------------------~~L~~L~l~~n~i 188 (477)
T 2id5_A 166 SIPTEAL-----------SHL----------------------------------------------HGLIVLRLRHLNI 188 (477)
T ss_dssp SCCHHHH-----------TTC----------------------------------------------TTCCEEEEESCCC
T ss_pred ccChhHh-----------ccc----------------------------------------------CCCcEEeCCCCcC
Confidence 2211111 112 3344444444444
Q ss_pred ccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccc
Q 047152 532 SGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLG 611 (776)
Q Consensus 532 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~ 611 (776)
++..+..+..+++|++|++++|.+.+.+|.......+|+.|++++|++++..+..+..+++|
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------ 250 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL------------------ 250 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC------------------
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc------------------
Confidence 44444445555666666666666655555555555566666666666663333344444444
Q ss_pred cccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCC
Q 047152 612 LVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLS 691 (776)
Q Consensus 612 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 691 (776)
+.|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus 251 --~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 251 --RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp --CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred --CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 556666666666666666666677777777777766666666667777777777777766555566666677777777
Q ss_pred CCcceecCCCCCcccccccccccCCCCCCCCC
Q 047152 692 YNNLSGKIPLGTQLQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 692 ~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~ 723 (776)
+|++.|.++....+.......+.++...|..|
T Consensus 329 ~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 329 SNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp SSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 77776655433222223334455555555443
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-34 Score=321.60 Aligned_cols=81 Identities=25% Similarity=0.364 Sum_probs=41.2
Q ss_pred CCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCC
Q 047152 160 LSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSN 239 (776)
Q Consensus 160 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 239 (776)
++++++|+++++.+.. .+.+..+++|++|++++|.+++.+ . +.++++|++|++++|.+.+..+ +.++ +
T Consensus 45 l~~l~~L~l~~~~i~~---l~~~~~l~~L~~L~Ls~n~l~~~~---~-~~~l~~L~~L~l~~n~l~~~~~--~~~l---~ 112 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDIT---P-LKNLTKLVDILMNNNQIADITP--LANL---T 112 (466)
T ss_dssp HHTCCEEECCSSCCCC---CTTGGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCCGG--GTTC---T
T ss_pred hccccEEecCCCCCcc---CcchhhhcCCCEEECCCCccCCch---h-hhccccCCEEECCCCccccChh--hcCC---C
Confidence 4566666666666532 233555566666666666555532 1 4555555555555555544333 3333 4
Q ss_pred CccEEEcCCCCCC
Q 047152 240 SLEVIDLTENNLT 252 (776)
Q Consensus 240 ~L~~L~Ls~n~l~ 252 (776)
+|++|++++|.++
T Consensus 113 ~L~~L~L~~n~l~ 125 (466)
T 1o6v_A 113 NLTGLTLFNNQIT 125 (466)
T ss_dssp TCCEEECCSSCCC
T ss_pred CCCEEECCCCCCC
Confidence 4444444444443
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.3e-34 Score=320.68 Aligned_cols=147 Identities=24% Similarity=0.336 Sum_probs=100.8
Q ss_pred CCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEec
Q 047152 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSL 598 (776)
Q Consensus 519 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 598 (776)
++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+..| +..+++|
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L----- 311 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL----- 311 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC-----
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC-----
Confidence 345555555555554433 4556777777777777765433 6677777777777777765433 4444444
Q ss_pred CCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCcc
Q 047152 599 YNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSS 678 (776)
Q Consensus 599 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 678 (776)
+.|++++|++++..| ++.+++|++|++++|++++. ..++.+++|+.|++++|++++..|
T Consensus 312 ---------------~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 370 (466)
T 1o6v_A 312 ---------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-- 370 (466)
T ss_dssp ---------------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--
T ss_pred ---------------CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--
Confidence 667777777776555 67778888888888888753 467778888888888888877766
Q ss_pred CcCCCCCCeeeCCCCccee
Q 047152 679 LSQLSGLSVMDLSYNNLSG 697 (776)
Q Consensus 679 l~~l~~L~~L~ls~N~l~g 697 (776)
+..+++|+.|++++|++++
T Consensus 371 ~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GTTCTTCCEEECCCEEEEC
T ss_pred hhcCCCCCEEeccCCcccC
Confidence 7777888888888888876
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=315.38 Aligned_cols=302 Identities=24% Similarity=0.229 Sum_probs=265.1
Q ss_pred CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEE
Q 047152 112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYL 191 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 191 (776)
+++++|+|++|.+++. .|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|++.. .....|.++++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc-cCcccccCCCCCCEE
Confidence 5899999999999875 67889999999999999999998889999999999999999999874 444568899999999
Q ss_pred EccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEE
Q 047152 192 YLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRIS 271 (776)
Q Consensus 192 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~ 271 (776)
++++|.+... .+..+.++++|++|++++|.+.+..+..+..+ ++|++|++++|++++..+..+..+++ |+.|+
T Consensus 110 ~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~ 182 (477)
T 2id5_A 110 DISENKIVIL--LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL---NSLEQLTLEKCNLTSIPTEALSHLHG--LIVLR 182 (477)
T ss_dssp ECTTSCCCEE--CTTTTTTCTTCCEEEECCTTCCEECTTSSTTC---TTCCEEEEESCCCSSCCHHHHTTCTT--CCEEE
T ss_pred ECCCCccccC--ChhHccccccCCEEECCCCccceeChhhccCC---CCCCEEECCCCcCcccChhHhcccCC--CcEEe
Confidence 9999999875 34678899999999999999998888888888 89999999999999877778888888 99999
Q ss_pred ccCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcc
Q 047152 272 LPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLS 350 (776)
Q Consensus 272 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~ 350 (776)
+++|.+.+..+..|..+++|++|++++|...+ +|.......+|++|++++|.+++..+..+..++ +|++|+|+
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~Ls 256 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV------YLRFLNLS 256 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT------TCCEEECC
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc------ccCeeECC
Confidence 99999998888889999999999999988777 777776777999999999999987777888887 89999999
Q ss_pred cccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCcccee
Q 047152 351 SNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLE 429 (776)
Q Consensus 351 ~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 429 (776)
+|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|++++..+. .|..+++|++|++++|++...
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES-VFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG-GBSCGGGCCEEECCSSCEECS
T ss_pred CCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh-HcCCCcccCEEEccCCCccCc
Confidence 9999877765 88899999999999999988888999999999999999999765444 678889999999999988753
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-33 Score=305.79 Aligned_cols=333 Identities=20% Similarity=0.215 Sum_probs=218.6
Q ss_pred CCCCCEEEccCCCCCCCchh-hcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCC
Q 047152 288 MVSLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFS 365 (776)
Q Consensus 288 l~~L~~L~L~~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~ 365 (776)
+++++.|++++|.++.+|.. +..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..|. ++.++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC------CcCEEECCCCCCCcCCHHHhcCCC
Confidence 45666666666666665543 45566666666666666555555555555 556666666555555444 45555
Q ss_pred CCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEc
Q 047152 366 SLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISL 445 (776)
Q Consensus 366 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 445 (776)
+|++|++++|.++...+..+..+++|++|++++|.+++..+. .+..+++|++|++++|++++.. +.
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~---~~---------- 183 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVD---LS---------- 183 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBCC---GG----------
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCccc---cc----------
Confidence 555555555555533333345555555555555555443333 3555555555555555544210 11
Q ss_pred cCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEE
Q 047152 446 GHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLN 525 (776)
Q Consensus 446 ~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~ 525 (776)
..++++.+++++|.+++.- ...++++|+
T Consensus 184 -------------------------~l~~L~~L~l~~n~l~~~~---------------------------~~~~L~~L~ 211 (390)
T 3o6n_A 184 -------------------------LIPSLFHANVSYNLLSTLA---------------------------IPIAVEELD 211 (390)
T ss_dssp -------------------------GCTTCSEEECCSSCCSEEE---------------------------CCSSCSEEE
T ss_pred -------------------------cccccceeecccccccccC---------------------------CCCcceEEE
Confidence 1234556666665554210 123567777
Q ss_pred ccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccc
Q 047152 526 LSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYE 605 (776)
Q Consensus 526 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~ 605 (776)
+++|+++..... ..++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|
T Consensus 212 l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------ 274 (390)
T 3o6n_A 212 ASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------ 274 (390)
T ss_dssp CCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred CCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC------------
Confidence 777776654332 246788888888888753 567888888899998888888778777777766
Q ss_pred cccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCC
Q 047152 606 YKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGL 685 (776)
Q Consensus 606 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 685 (776)
++|++++|++++ +|..+..+++|++|+|++|+++ .+|..++.+++|++|++++|++++. | +..+++|
T Consensus 275 --------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L 341 (390)
T 3o6n_A 275 --------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 341 (390)
T ss_dssp --------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred --------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccC
Confidence 678888888884 5667778899999999999998 5788888999999999999999854 3 6778899
Q ss_pred CeeeCCCCcceecCCCCCcccccccccccCCCCCCCCC
Q 047152 686 SVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 686 ~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~ 723 (776)
+.|++++|++.|.... ..+..+....+.+++..|.++
T Consensus 342 ~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 342 KNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp SEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred CEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 9999999999986432 345566666777888778754
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-33 Score=322.49 Aligned_cols=333 Identities=18% Similarity=0.192 Sum_probs=213.3
Q ss_pred CCCCCEEEccCCCCCCCchh-hcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCC
Q 047152 288 MVSLRYLDLSSNELRGIPKF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFS 365 (776)
Q Consensus 288 l~~L~~L~L~~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~ 365 (776)
+.+++.+++++|.+..+|.. +..+++|++|++++|.+++..+..+..++ +|++|+|++|.+++..|. ++.++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC------CCCEEECCCCcCCCCCHHHHcCCC
Confidence 34455555555555554432 34455555555555555544444444444 455555555555444443 34445
Q ss_pred CCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEc
Q 047152 366 SLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISL 445 (776)
Q Consensus 366 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 445 (776)
+|++|++++|.+++..+..|..+++|++|++++|.+ ++..+..+..+++|++|++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-------------------------~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-------------------------ERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-------------------------CBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-------------------------CCCChhhhhcCCcCcEEEC
Confidence 555555555554433333344444455555555444 4444444444444444444
Q ss_pred cCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEE
Q 047152 446 GHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLN 525 (776)
Q Consensus 446 ~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~ 525 (776)
++|.+++.-+ ..+++|+.+++++|.+++.- .+.+|+.|+
T Consensus 179 ~~N~l~~~~~--------------~~l~~L~~L~l~~n~l~~l~---------------------------~~~~L~~L~ 217 (597)
T 3oja_B 179 SSNRLTHVDL--------------SLIPSLFHANVSYNLLSTLA---------------------------IPIAVEELD 217 (597)
T ss_dssp TTSCCSBCCG--------------GGCTTCSEEECCSSCCSEEE---------------------------CCTTCSEEE
T ss_pred cCCCCCCcCh--------------hhhhhhhhhhcccCcccccc---------------------------CCchhheee
Confidence 4444432110 11234666666666554210 124567777
Q ss_pred ccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccc
Q 047152 526 LSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYE 605 (776)
Q Consensus 526 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~ 605 (776)
+++|.++...+.. .++|+.|+|++|.+++ +..+..+++|+.|++++|.+++..|..|+.+++|
T Consensus 218 ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------ 280 (597)
T 3oja_B 218 ASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------ 280 (597)
T ss_dssp CCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred ccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC------------
Confidence 7777766544332 2578888888888876 4678888899999999999888888888777776
Q ss_pred cccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCC
Q 047152 606 YKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGL 685 (776)
Q Consensus 606 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 685 (776)
+.|+|++|++++ +|..++.+++|+.|+|++|.++ .+|..++.+++|++|+|++|++++. | +..+++|
T Consensus 281 --------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L 347 (597)
T 3oja_B 281 --------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 347 (597)
T ss_dssp --------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred --------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence 678888888885 6777788999999999999998 6888899999999999999999855 3 6678899
Q ss_pred CeeeCCCCcceecCCCCCcccccccccccCCCCCCCCC
Q 047152 686 SVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 686 ~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~ 723 (776)
+.|++++|+++|.++. ..+..+....+.+++..|+.+
T Consensus 348 ~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 348 KNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 9999999999987543 456667777788999999864
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.5e-34 Score=299.73 Aligned_cols=187 Identities=33% Similarity=0.544 Sum_probs=166.6
Q ss_pred CCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCC-CCcEEeccCCcccccCCccccccCCCcEEe
Q 047152 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFD-SLVILNLANNNFFGKIPNSMGFLHNIRSLS 597 (776)
Q Consensus 519 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (776)
++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L---- 199 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L---- 199 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C----
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c----
Confidence 3455555666666666666677788999999999999999999999998 999999999999999998887765 5
Q ss_pred cCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCc
Q 047152 598 LYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPS 677 (776)
Q Consensus 598 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 677 (776)
++|++++|++++.+|..++.+++|++|+|++|++++.+|. +..+++|++|++++|++++.+|.
T Consensus 200 ----------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 200 ----------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp ----------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred ----------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence 7899999999999999999999999999999999976665 88999999999999999999999
Q ss_pred cCcCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCCCCCCC
Q 047152 678 SLSQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLPLRNKC 728 (776)
Q Consensus 678 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~l~~~c 728 (776)
.+..+++|++|++++|+++|.+|....+..+..+.+.|||++||.|+. .|
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred HHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999999999999999999988999999999999999998876 57
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.5e-33 Score=301.27 Aligned_cols=309 Identities=22% Similarity=0.264 Sum_probs=241.5
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCc-cccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152 109 LKLQHLTYLDLSRNNFSGSSIPE-FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS 187 (776)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 187 (776)
..++++++|++++|.++. +|. .+..+++|++|++++|.+++..+..|+.+++|++|++++|.+.. ..+..++++++
T Consensus 42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCC
Confidence 457889999999998874 554 46889999999999999987777789999999999999999875 55567889999
Q ss_pred CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152 188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV 267 (776)
Q Consensus 188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L 267 (776)
|++|++++|.++.++. ..++++++|++|++++|.+.+..+..+..+ ++|++|++++|++++.. +..+++ +
T Consensus 119 L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~---~~~l~~--L 188 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHVD---LSLIPS--L 188 (390)
T ss_dssp CCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSC---TTCCEEECCSSCCSBCC---GGGCTT--C
T ss_pred CCEEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCC---CCCCEEECCCCcCCccc---cccccc--c
Confidence 9999999999887532 346889999999999999988888888877 88999999999887642 445666 8
Q ss_pred CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEE
Q 047152 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347 (776)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L 347 (776)
+.+++++|.+++ +...++|++|++++|.++.+|... .++|++|++++|.+++. ..+..++ +|++|
T Consensus 189 ~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~------~L~~L 253 (390)
T 3o6n_A 189 FHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP------GLVEV 253 (390)
T ss_dssp SEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCT------TCSEE
T ss_pred ceeecccccccc-----cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCC------CccEE
Confidence 889999888775 334568889999999888876533 46888888888888865 4566666 88888
Q ss_pred EcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCcc
Q 047152 348 HLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSL 426 (776)
Q Consensus 348 ~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 426 (776)
++++|.+++..|. +..+++|++|++++|++++ +|..+..+++|++|++++|++++ +|. .+..+++|++|++++|++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VER-NQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGG-GHHHHTTCSEEECCSSCC
T ss_pred ECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCc-cccccCcCCEEECCCCcc
Confidence 8888888877665 7888888888888888874 46666778888888888888864 444 367788888888888888
Q ss_pred ceecCCCCCCCCCCcEEEccCcCCC
Q 047152 427 TLEFSHDWIPPFQLNTISLGHCKMG 451 (776)
Q Consensus 427 ~~~~~~~~~~~~~L~~L~l~~n~l~ 451 (776)
+... +..+++|+.+++++|++.
T Consensus 331 ~~~~---~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 331 VTLK---LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCCC---CCTTCCCSEEECCSSCEE
T ss_pred ceeC---chhhccCCEEEcCCCCcc
Confidence 6432 444555666666665543
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9e-32 Score=287.98 Aligned_cols=284 Identities=26% Similarity=0.384 Sum_probs=130.4
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS 187 (776)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 187 (776)
+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ +| .+.++++|++|++++|.+.. .+.+.++++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~---~~~~~~l~~ 133 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISD---ISPLANLTK 133 (347)
T ss_dssp GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCC---CGGGTTCTT
T ss_pred hhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccC---chhhccCCc
Confidence 4555555555555555543 232 5555555555555555543 22 35555555555555555432 122455555
Q ss_pred CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152 188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV 267 (776)
Q Consensus 188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L 267 (776)
|++|++++|..... +..+..+++|++|++++|.+.+..+ +..+ ++|++|++++|.+.+..+ +..+++ +
T Consensus 134 L~~L~l~~n~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l---~~L~~L~l~~n~l~~~~~--~~~l~~--L 201 (347)
T 4fmz_A 134 MYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKVKDVTP--IANL---TDLYSLSLNYNQIEDISP--LASLTS--L 201 (347)
T ss_dssp CCEEECTTCTTCCC---CGGGTTCTTCCEEECCSSCCCCCGG--GGGC---TTCSEEECTTSCCCCCGG--GGGCTT--C
T ss_pred eeEEECCCCCCccc---ccchhhCCCCcEEEecCCCcCCchh--hccC---CCCCEEEccCCccccccc--ccCCCc--c
Confidence 55555555533221 1224455555555555555444333 3333 455555555555443222 344444 5
Q ss_pred CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEE
Q 047152 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347 (776)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L 347 (776)
+.+++++|.+.+..+ +..+++|++|++++|.+++++. +..+++|++|++++|.+++. ..+..++ +|++|
T Consensus 202 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~------~L~~L 270 (347)
T 4fmz_A 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLT------KLKML 270 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCT------TCCEE
T ss_pred ceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCC------CcCEE
Confidence 555555554443322 4444455555555555544433 44444455555555444432 1233333 44444
Q ss_pred EcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCcc
Q 047152 348 HLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSL 426 (776)
Q Consensus 348 ~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 426 (776)
++++|.+++. +.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..| +..+++|++|++++|.+
T Consensus 271 ~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 271 NVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVI 345 (347)
T ss_dssp ECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC--
T ss_pred EccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhcc
Confidence 4444444432 334444444444444444444444444444444444444444443322 33444444444444443
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.6e-31 Score=283.30 Aligned_cols=307 Identities=24% Similarity=0.376 Sum_probs=267.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS 187 (776)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 187 (776)
+..+++|++|+++++.+.. +| .+..+++|++|++++|++++ +|. +..+++|++|++++|.+.. .+.+.++++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~---~~~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD---ISALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC---CGGGTTCTT
T ss_pred chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC---chHHcCCCc
Confidence 5678999999999999984 55 48889999999999999985 444 9999999999999999864 467999999
Q ss_pred CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152 188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV 267 (776)
Q Consensus 188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L 267 (776)
|++|++++|.+.+.+. +..+++|++|++++|......+. +..+ ++|++|++++|.+.+..+ +..+++ |
T Consensus 112 L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~-~~~l---~~L~~L~l~~~~~~~~~~--~~~l~~--L 179 (347)
T 4fmz_A 112 LRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLSP-LSNM---TGLNYLTVTESKVKDVTP--IANLTD--L 179 (347)
T ss_dssp CSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCGG-GTTC---TTCCEEECCSSCCCCCGG--GGGCTT--C
T ss_pred CCEEECcCCcccCchh----hccCCceeEEECCCCCCcccccc-hhhC---CCCcEEEecCCCcCCchh--hccCCC--C
Confidence 9999999999998532 88999999999999976665554 6666 999999999999986554 778888 9
Q ss_pred CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEE
Q 047152 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347 (776)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L 347 (776)
+.|++++|.+.+..+ +..+++|+.|++++|.+++++. +..+++|++|++++|.+++..+ +..++ +|++|
T Consensus 180 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L 248 (347)
T 4fmz_A 180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLS------QLTWL 248 (347)
T ss_dssp SEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCT------TCCEE
T ss_pred CEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCC------CCCEE
Confidence 999999999987544 8899999999999999999766 8899999999999999998765 66676 99999
Q ss_pred EcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccc
Q 047152 348 HLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427 (776)
Q Consensus 348 ~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 427 (776)
++++|.+++. +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+. .+..+++|++|++++|+++
T Consensus 249 ~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 249 EIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp ECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCC
T ss_pred ECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCccc
Confidence 9999999864 6689999999999999999965 4588999999999999999877766 7899999999999999999
Q ss_pred eecCCCCCCCCCCcEEEccCcCCC
Q 047152 428 LEFSHDWIPPFQLNTISLGHCKMG 451 (776)
Q Consensus 428 ~~~~~~~~~~~~L~~L~l~~n~l~ 451 (776)
+..+ +..+++|+++++++|.++
T Consensus 325 ~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 325 DIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGG--GGGCTTCSEESSSCC---
T ss_pred cccC--hhhhhccceeehhhhccc
Confidence 8766 778899999999999875
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.9e-32 Score=309.37 Aligned_cols=310 Identities=22% Similarity=0.244 Sum_probs=234.2
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCC
Q 047152 109 LKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSL 188 (776)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L 188 (776)
..+++++.|++++|.+... .+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+.. ..+..|+++++|
T Consensus 48 l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 125 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLL 125 (597)
T ss_dssp GGGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred ccCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCC
Confidence 3467888888888888753 34457788889999999888887777788888899999998888875 555667888888
Q ss_pred cEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcC
Q 047152 189 IYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD 268 (776)
Q Consensus 189 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~ 268 (776)
++|++++|.++.++ +..++++++|++|++++|.+.+..|..+..+ ++|++|++++|.+++.. +..+++ |+
T Consensus 126 ~~L~L~~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~---~~~l~~--L~ 195 (597)
T 3oja_B 126 TVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHVD---LSLIPS--LF 195 (597)
T ss_dssp CEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTC---TTCCEEECTTSCCSBCC---GGGCTT--CS
T ss_pred CEEEeeCCCCCCCC--HHHhccCCCCCEEEeeCCcCCCCChhhhhcC---CcCcEEECcCCCCCCcC---hhhhhh--hh
Confidence 88888888888753 2446888888888888888888888888877 88888888888887643 345566 88
Q ss_pred EEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEE
Q 047152 269 RISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLH 348 (776)
Q Consensus 269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 348 (776)
.|++++|.+++ +...++|+.|++++|.++.+|..+ .++|++|++++|.+++. ..+..++ +|++|+
T Consensus 196 ~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~------~L~~L~ 260 (597)
T 3oja_B 196 HANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP------GLVEVD 260 (597)
T ss_dssp EEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCT------TCSEEE
T ss_pred hhhcccCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCC------CCCEEE
Confidence 88888887765 344567888888888888765443 35788888888888763 5566666 788888
Q ss_pred cccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccc
Q 047152 349 LSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427 (776)
Q Consensus 349 L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 427 (776)
|++|.+++..|. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|. .+..+++|++|++++|.++
T Consensus 261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~-~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG-GHHHHTTCSEEECCSSCCC
T ss_pred CCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCc-ccccCCCCCEEECCCCCCC
Confidence 888888877665 7788888888888888875 4666677888888888888886 4554 4677788888888888876
Q ss_pred eecCCCCCCCCCCcEEEccCcCCC
Q 047152 428 LEFSHDWIPPFQLNTISLGHCKMG 451 (776)
Q Consensus 428 ~~~~~~~~~~~~L~~L~l~~n~l~ 451 (776)
+.. +..+++|+.|++++|.+.
T Consensus 338 ~~~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 338 TLK---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCC---CCTTCCCSEEECCSSCEE
T ss_pred CcC---hhhcCCCCEEEeeCCCCC
Confidence 542 344455556666655543
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=1.1e-32 Score=291.65 Aligned_cols=270 Identities=18% Similarity=0.284 Sum_probs=173.7
Q ss_pred CCCCHHHHHHHHHHHhcCC-CCCCCCCCCCCC-CCCCCCCCccceeeCC--------CCCcEEEEECCCCCCCCCCCcee
Q 047152 34 TRCIDEEREALLTFKASLV-DESGILSSWRRE-DEKRDCCKWTGVGCSK--------RTGHVNKLDLQPIGFDSFPLRGK 103 (776)
Q Consensus 34 ~~~~~~~~~~ll~~k~~~~-~~~~~~~~W~~~-~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~l~g~ 103 (776)
..+..+|+.||++||+++. |+.+...+|... ....++|.|.|+.|.. ..++|+.|+|++ +.+. .
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~-----n~l~-~ 95 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS-----VPLP-Q 95 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES-----SCCS-S
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC-----CCch-h
Confidence 3466789999999999984 777777889410 1367899999999942 346788888888 4555 6
Q ss_pred ccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhc
Q 047152 104 ITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLS 183 (776)
Q Consensus 104 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~ 183 (776)
+|+.++++++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..++++++|++|++++|++.+ ..+..+.
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~-~~p~~~~ 171 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT-ELPEPLA 171 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC-CCCSCSE
T ss_pred cChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc-ccChhHh
Confidence 7777888888888888888888 47888888888888888888888 778888888888888888877654 3343333
Q ss_pred ---------cCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCC
Q 047152 184 ---------HLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNS 254 (776)
Q Consensus 184 ---------~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~ 254 (776)
++++|++|++++|.++. +|..++++++|++|++++|.+++ +|..+..+ ++|++|++++|++.+.
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l---~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIRS---LPASIANLQNLKSLKIRNSPLSA-LGPAIHHL---PKLEELDLRGCTALRN 244 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCCC---CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC---TTCCEEECTTCTTCCB
T ss_pred hccchhhhccCCCCCEEECcCCCcCc---chHhhcCCCCCCEEEccCCCCCc-CchhhccC---CCCCEEECcCCcchhh
Confidence 36666666666666554 23445555556666655555554 23334444 5555555555555555
Q ss_pred chhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCC
Q 047152 255 VYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGK 322 (776)
Q Consensus 255 ~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n 322 (776)
+|..+..+++ |+.|++++|.+.+.+|..+..+++|++|++++|.+.+ +|..++++++|+.+++..+
T Consensus 245 ~p~~~~~l~~--L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 245 YPPIFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCTTCCCC--CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hHHHhcCCCC--CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 5444444444 4455554444444444444444444444444444444 4444444444444444433
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.7e-32 Score=305.83 Aligned_cols=65 Identities=23% Similarity=0.192 Sum_probs=31.3
Q ss_pred CCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCc--chhhHhhcCCCCCCEEEccCCCCC
Q 047152 161 SRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNF--SNWVQLLSKLHSLTTLSLYSCDLP 225 (776)
Q Consensus 161 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~ 225 (776)
++|++||+++|++........+..+++|++|++++|.++.. ..++..+..+++|++|++++|.+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 69 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 69 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC
Confidence 34566666666654311112245555555555555555432 123344444455555555554443
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.3e-33 Score=310.61 Aligned_cols=232 Identities=20% Similarity=0.157 Sum_probs=104.0
Q ss_pred CcEEEccCCCCCCc--chhhHhhcCCCCCCEEEccCCCCCCCCchhhhc--CCCCCCccEEEcCCCCCCCCc----hhhH
Q 047152 188 LIYLYLDLNDLSNF--SNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLN--LNSSNSLEVIDLTENNLTNSV----YPWL 259 (776)
Q Consensus 188 L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~--l~~~~~L~~L~Ls~n~l~~~~----~~~l 259 (776)
|++|++++|.++.. ..++..+.++++|++|++++|.+.+..+..+.. ....++|++|++++|++++.. +..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 44444444444322 123344444555555555555443332222221 001134555555555554422 2333
Q ss_pred hhcCCCCcCEEEccCCccccCcchhhc-----CCCCCCEEEccCCCCCC-----CchhhcccCCCcEEeccCCcCCCccc
Q 047152 260 FNVSSSLVDRISLPSNQLQGSIPEAFG-----RMVSLRYLDLSSNELRG-----IPKFLGNMCGLKILYLSGKELKGQLS 329 (776)
Q Consensus 260 ~~~~~~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~~~ 329 (776)
..+++ |++|++++|.+++..+..+. ..++|++|++++|.+++ ++..+..+++|++|++++|.+++...
T Consensus 167 ~~~~~--L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 167 RAKPD--FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHCTT--CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred hhCCC--CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 33344 55555555554433222222 23455555555555554 34444555555555555555544322
Q ss_pred hHHh-----hccCCCcCCCccEEEccccccccc----CCC-ccCCCCCCEEeccCccccccchhcccC-----CCCCcEE
Q 047152 330 EFIQ-----DLSSGCTKNSLEWLHLSSNEITGS----MPN-LGEFSSLKQLNLENNLLNGTIHKSIGQ-----LFKLEML 394 (776)
Q Consensus 330 ~~~~-----~l~~~~~~~~L~~L~L~~n~l~~~----~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L 394 (776)
..+. .++ +|++|++++|.+++. ++. +..+++|++|++++|.+++..+..+.. .++|++|
T Consensus 245 ~~l~~~~~~~~~------~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 245 AELCPGLLHPSS------RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHHTSTTC------CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHHhcCCC------CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 2111 122 455555555555532 111 444555555555555554433322221 2455666
Q ss_pred ECCCcccccc----ccHHhhhCCCCCcEEECCCCccce
Q 047152 395 KLNGNSLGGV----ISEALFSNLSRLAALDLADNSLTL 428 (776)
Q Consensus 395 ~L~~N~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~ 428 (776)
++++|.+++. ++. .+..+++|++|++++|.++.
T Consensus 319 ~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSS-VLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp ECTTSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHH
T ss_pred EcCCCCCchHHHHHHHH-HHhhCCCccEEEccCCcccc
Confidence 6666655443 222 34445556666666555543
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-29 Score=269.90 Aligned_cols=288 Identities=19% Similarity=0.221 Sum_probs=191.9
Q ss_pred CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEE
Q 047152 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY 192 (776)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 192 (776)
++++++++++.++ .+|..+. ++|++|++++|++++..|..|+++++|++|++++|.+.. ..+..++++++|++|+
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc-cCHhHhhCcCCCCEEE
Confidence 5667777777766 3565543 567777777777775556667777777777777777653 3455667777777777
Q ss_pred ccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCC--CchhhHhhcCCCCcCEE
Q 047152 193 LDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN--SVYPWLFNVSSSLVDRI 270 (776)
Q Consensus 193 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~~~~~L~~L 270 (776)
+++|.++.++ ..+. ++|++|++++|.+.+..+..+..+ ++|++|++++|.++. ..+..+..+ + |+.|
T Consensus 109 L~~n~l~~l~---~~~~--~~L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~l-~--L~~L 177 (332)
T 2ft3_A 109 ISKNHLVEIP---PNLP--SSLVELRIHDNRIRKVPKGVFSGL---RNMNCIEMGGNPLENSGFEPGAFDGL-K--LNYL 177 (332)
T ss_dssp CCSSCCCSCC---SSCC--TTCCEEECCSSCCCCCCSGGGSSC---SSCCEEECCSCCCBGGGSCTTSSCSC-C--CSCC
T ss_pred CCCCcCCccC---cccc--ccCCEEECCCCccCccCHhHhCCC---ccCCEEECCCCccccCCCCcccccCC-c--cCEE
Confidence 7777766543 2222 677777777777776666666666 777777777777742 444444444 4 7777
Q ss_pred EccCCccccCcchhhcCCCCCCEEEccCCCCCCCc-hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEc
Q 047152 271 SLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL 349 (776)
Q Consensus 271 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L 349 (776)
++++|++++ +|..+. ++|++|++++|.+++++ ..+..+++|++|++++|.+++..+..+..++ +|++|++
T Consensus 178 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~L 248 (332)
T 2ft3_A 178 RISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP------TLRELHL 248 (332)
T ss_dssp BCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT------TCCEEEC
T ss_pred ECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC------CCCEEEC
Confidence 777777775 444333 57777888888877743 6677777888888888887777776777766 7888888
Q ss_pred ccccccccCCCccCCCCCCEEeccCccccccchhcccC------CCCCcEEECCCccccc-cccHHhhhCCCCCcEEECC
Q 047152 350 SSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQ------LFKLEMLKLNGNSLGG-VISEALFSNLSRLAALDLA 422 (776)
Q Consensus 350 ~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~Ls 422 (776)
++|+++..++.+..+++|++|++++|++++..+..+.. ..+|+.|++++|.+.. .++...|..+++|+.++++
T Consensus 249 ~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp CSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred CCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence 88877744444777778888888888877665555543 3567777777777651 2333357777777777777
Q ss_pred CCc
Q 047152 423 DNS 425 (776)
Q Consensus 423 ~n~ 425 (776)
+|+
T Consensus 329 ~n~ 331 (332)
T 2ft3_A 329 NYK 331 (332)
T ss_dssp ---
T ss_pred ccc
Confidence 664
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.2e-29 Score=264.35 Aligned_cols=287 Identities=20% Similarity=0.205 Sum_probs=151.8
Q ss_pred EEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCC
Q 047152 85 VNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQ 164 (776)
Q Consensus 85 v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 164 (776)
++.+++++ ..+. .+|..+. +.+++|++++|.+++. .+..++++++|++|++++|++++..|..|+++++|+
T Consensus 33 l~~l~~~~-----~~l~-~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 33 LRVVQCSD-----LGLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp TTEEECTT-----SCCC-SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CeEEEecC-----CCcc-ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 34566666 3332 2343332 5677777777777753 445677777777777777777766677777777777
Q ss_pred EEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCC--CCchhhhcCCCCCCcc
Q 047152 165 FLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPP--IIPSSLLNLNSSNSLE 242 (776)
Q Consensus 165 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~~~~L~ 242 (776)
+|++++|++.. .+..+. ++|++|++++|.+++.+ +..+.++++|++|++++|.+.. ..+..+..+ ++|+
T Consensus 104 ~L~Ls~n~l~~--l~~~~~--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l---~~L~ 174 (330)
T 1xku_A 104 RLYLSKNQLKE--LPEKMP--KTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM---KKLS 174 (330)
T ss_dssp EEECCSSCCSB--CCSSCC--TTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC---TTCC
T ss_pred EEECCCCcCCc--cChhhc--ccccEEECCCCcccccC--HhHhcCCccccEEECCCCcCCccCcChhhccCC---CCcC
Confidence 77777777652 222222 56666666666665532 3445556666666666655532 334444444 5555
Q ss_pred EEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccC
Q 047152 243 VIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSG 321 (776)
Q Consensus 243 ~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~ 321 (776)
+|++++|.++. +|. .+. ++|++|++++|.+++ .|..+..+++|++|++++
T Consensus 175 ~L~l~~n~l~~-l~~--------------------------~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 175 YIRIADTNITT-IPQ--------------------------GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp EEECCSSCCCS-CCS--------------------------SCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred EEECCCCcccc-CCc--------------------------ccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 55555554442 221 111 344444444444444 234444444444444444
Q ss_pred CcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccC------CCCCcEEE
Q 047152 322 KELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQ------LFKLEMLK 395 (776)
Q Consensus 322 n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~ 395 (776)
|.+++..+..+..++ +|++|++++|+++..+..+..+++|++|++++|++++..+..+.. .+.++.|+
T Consensus 226 n~l~~~~~~~~~~l~------~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 226 NSISAVDNGSLANTP------HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp SCCCEECTTTGGGST------TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred CcCceeChhhccCCC------CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence 444444444444444 455555555555533333555555555555555555444433322 24555666
Q ss_pred CCCccccc-cccHHhhhCCCCCcEEECCCC
Q 047152 396 LNGNSLGG-VISEALFSNLSRLAALDLADN 424 (776)
Q Consensus 396 L~~N~l~~-~~~~~~~~~l~~L~~L~Ls~n 424 (776)
+++|.+.. .+++..|..+.+++.+++++|
T Consensus 300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred eecCcccccccCccccccccceeEEEeccc
Confidence 66665532 122234555566666666555
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3e-29 Score=266.38 Aligned_cols=287 Identities=21% Similarity=0.245 Sum_probs=159.1
Q ss_pred CCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCC
Q 047152 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLK 368 (776)
Q Consensus 290 ~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~ 368 (776)
+++.++++++.++.+|..+. +++++|++++|.+++..+..+..++ +|++|++++|++++..|. +..+++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQ------HLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCT------TCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCC------CCcEEECCCCccCccCHhHhhCcCCCC
Confidence 56777777777766665542 4666666666666655555555555 566666666666655443 55666666
Q ss_pred EEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce--ecCCCCCCCCCCcEEEcc
Q 047152 369 QLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL--EFSHDWIPPFQLNTISLG 446 (776)
Q Consensus 369 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~l~ 446 (776)
+|++++|.++ .+|..+. ++|++|++++|.+++..+. .|.++++|++|++++|.++. ..+..+...
T Consensus 106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--------- 172 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKG-VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--------- 172 (332)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSG-GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC---------
T ss_pred EEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHh-HhCCCccCCEEECCCCccccCCCCcccccCC---------
Confidence 6666666665 3343333 5666666666666543332 45666666666666665542 111111111
Q ss_pred CcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEc
Q 047152 447 HCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNL 526 (776)
Q Consensus 447 ~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l 526 (776)
+|++|++
T Consensus 173 -------------------------------------------------------------------------~L~~L~l 179 (332)
T 2ft3_A 173 -------------------------------------------------------------------------KLNYLRI 179 (332)
T ss_dssp -------------------------------------------------------------------------CCSCCBC
T ss_pred -------------------------------------------------------------------------ccCEEEC
Confidence 2223333
Q ss_pred cCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccc
Q 047152 527 SKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEY 606 (776)
Q Consensus 527 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~ 606 (776)
++|++++..... .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 180 ~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------- 243 (332)
T 2ft3_A 180 SEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL------------- 243 (332)
T ss_dssp CSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC-------------
T ss_pred cCCCCCccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC-------------
Confidence 333333211111 1345555555555555555555566666666666666665555555554444
Q ss_pred ccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccC------cCCCCeeeCcCceee--ecCCcc
Q 047152 607 KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQ------LKSLDFLDLSRNQFF--GGIPSS 678 (776)
Q Consensus 607 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~--~~~p~~ 678 (776)
++|++++|+++ .+|..++.+++|++|++++|++++..+..+.. ...|+.|++++|.+. +..|..
T Consensus 244 -------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 244 -------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp -------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred -------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence 45566666666 56666666666666666666666544444443 245677777777765 455666
Q ss_pred CcCCCCCCeeeCCCCc
Q 047152 679 LSQLSGLSVMDLSYNN 694 (776)
Q Consensus 679 l~~l~~L~~L~ls~N~ 694 (776)
+..++.|+.+++++|+
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 7777777777777664
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.1e-28 Score=261.77 Aligned_cols=288 Identities=20% Similarity=0.209 Sum_probs=147.9
Q ss_pred CCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCC
Q 047152 290 SLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLK 368 (776)
Q Consensus 290 ~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~ 368 (776)
+++.++++++.++.+|..+. +++++|++++|.+++..+..+..++ +|++|++++|.+++..|. +..+++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK------NLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCT------TCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCC------CCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 34555555555555544332 3455555555555554444444444 555555555555554343 55555566
Q ss_pred EEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccce--ecCCCCCCCCCCcEEEcc
Q 047152 369 QLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTL--EFSHDWIPPFQLNTISLG 446 (776)
Q Consensus 369 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~l~ 446 (776)
+|++++|.++ .+|..+. ++|++|++++|.+++..+. .+.++++|++|++++|.+.. ..+..+..+
T Consensus 104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--------- 170 (330)
T 1xku_A 104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENGAFQGM--------- 170 (330)
T ss_dssp EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCTTGGGGC---------
T ss_pred EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCccCcChhhccCC---------
Confidence 6666665555 3333332 4566666666666543332 45666666666666665532 111111111
Q ss_pred CcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEc
Q 047152 447 HCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNL 526 (776)
Q Consensus 447 ~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l 526 (776)
++|++|++++|.+
T Consensus 171 --------------------------~~L~~L~l~~n~l----------------------------------------- 183 (330)
T 1xku_A 171 --------------------------KKLSYIRIADTNI----------------------------------------- 183 (330)
T ss_dssp --------------------------TTCCEEECCSSCC-----------------------------------------
T ss_pred --------------------------CCcCEEECCCCcc-----------------------------------------
Confidence 1222222222222
Q ss_pred cCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccc
Q 047152 527 SKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEY 606 (776)
Q Consensus 527 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~ 606 (776)
+...... .++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|
T Consensus 184 -----~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------- 242 (330)
T 1xku_A 184 -----TTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL------------- 242 (330)
T ss_dssp -----CSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC-------------
T ss_pred -----ccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC-------------
Confidence 2111111 1345555555555555555555555666666666666655555455544444
Q ss_pred ccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccC------cCCCCeeeCcCceeee--cCCcc
Q 047152 607 KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQ------LKSLDFLDLSRNQFFG--GIPSS 678 (776)
Q Consensus 607 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~--~~p~~ 678 (776)
++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+.. ..|..
T Consensus 243 -------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 243 -------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp -------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred -------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccc
Confidence 45566666665 55666666666666666666666544444432 3566677777776643 44566
Q ss_pred CcCCCCCCeeeCCCCc
Q 047152 679 LSQLSGLSVMDLSYNN 694 (776)
Q Consensus 679 l~~l~~L~~L~ls~N~ 694 (776)
+..+..++.+++++|+
T Consensus 315 f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 315 FRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GTTCCCGGGEEC----
T ss_pred cccccceeEEEecccC
Confidence 6667777777777764
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.2e-31 Score=305.24 Aligned_cols=442 Identities=15% Similarity=0.080 Sum_probs=278.2
Q ss_pred CCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCC---CCCCCcccc----------
Q 047152 68 RDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFS---GSSIPEFLG---------- 134 (776)
Q Consensus 68 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~---~~~~p~~~~---------- 134 (776)
.-|++|.++.+.. . ..+.+.+ ......+..+.++++|++|+++++... +. +|..++
T Consensus 39 ~vck~W~~~~~~~--~--~~l~~~~------~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l 107 (592)
T 3ogk_B 39 LVCRRWFKIDSET--R--EHVTMAL------CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEI 107 (592)
T ss_dssp TSCHHHHHHHHHH--C--CEEEESC------GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHH
T ss_pred HHhHHHHHhhhcc--c--cEEEEee------ccccChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHH
Confidence 3466899886532 1 2233332 123334456678999999999875321 11 332222
Q ss_pred --CCCCCCEEecCCCCCCCCCCccCCCC--CCCCEEeccCCCC-CCCCCchhhccCCCCcEEEccCCCCCCcc--hhhHh
Q 047152 135 --SLGKLSYLGLSSAEFAGPIPHQLGNL--SRLQFLDLSFNNL-FSGENLDWLSHLSSLIYLYLDLNDLSNFS--NWVQL 207 (776)
Q Consensus 135 --~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~ 207 (776)
.+++|++|+|++|.+++..+..++.. .+|++|++++|.. ..........++++|++|++++|.+++.. .++..
T Consensus 108 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred HhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 68899999999998877666666553 3499999988862 11011123357889999999988876531 14455
Q ss_pred hcCCCCCCEEEccCCCCCCCC----chhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccc---cC
Q 047152 208 LSKLHSLTTLSLYSCDLPPII----PSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQ---GS 280 (776)
Q Consensus 208 l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~---~~ 280 (776)
...+++|++|++++|.+++.. +..+.++ ++|++|++++|.+.+ ++..+.++++ |++|+++.+... +.
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~---~~L~~L~L~~~~~~~-l~~~~~~~~~--L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNC---RSLVSVKVGDFEILE-LVGFFKAAAN--LEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC---TTCCEEECSSCBGGG-GHHHHHHCTT--CCEEEECBCCCCTTCTT
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhC---CCCcEEeccCccHHH-HHHHHhhhhH--HHhhcccccccccchHH
Confidence 677888999999888887433 3344556 888888888888775 6677888888 888888754332 23
Q ss_pred cchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccc-hHHhhccCCCcCCCccEEEcccccccccCC
Q 047152 281 IPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLS-EFIQDLSSGCTKNSLEWLHLSSNEITGSMP 359 (776)
Q Consensus 281 ~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~ 359 (776)
.+..+..+++|+.|+++++....+|..+..+++|++|++++|.+++... ..+..++ +|++|+++++...+.++
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~------~L~~L~L~~~~~~~~l~ 335 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP------NLEVLETRNVIGDRGLE 335 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT------TCCEEEEEGGGHHHHHH
T ss_pred HHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc------CCCEEeccCccCHHHHH
Confidence 4455677888888888887656678778888888888888888665443 3345555 78888887332222223
Q ss_pred C-ccCCCCCCEEecc-----------Cccccccc-hhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECC----
Q 047152 360 N-LGEFSSLKQLNLE-----------NNLLNGTI-HKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLA---- 422 (776)
Q Consensus 360 ~-l~~l~~L~~L~Ls-----------~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls---- 422 (776)
. ...+++|++|+++ .|.+++.. +.....+++|++|+++.|.+++..+......+++|++|+++
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 3 3567778888887 35555432 22234577788888877777665554322337777777775
Q ss_pred CCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEccccc--CcccCCcccccccCCC
Q 047152 423 DNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQ--MRGKVPDLSLRFDISG 500 (776)
Q Consensus 423 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~--l~g~~p~~~~~~~~~l 500 (776)
.|.+++..... .++ .+...+++|+.|+++.+. +++..+.
T Consensus 416 ~n~l~~~p~~~-------------------~~~-----------~~~~~~~~L~~L~L~~~~~~l~~~~~~--------- 456 (592)
T 3ogk_B 416 EERITDLPLDN-------------------GVR-----------SLLIGCKKLRRFAFYLRQGGLTDLGLS--------- 456 (592)
T ss_dssp CSCCSSCCCHH-------------------HHH-----------HHHHHCTTCCEEEEECCGGGCCHHHHH---------
T ss_pred CccccCchHHH-------------------HHH-----------HHHHhCCCCCEEEEecCCCCccHHHHH---------
Confidence 33443210000 000 012224566777765322 3322111
Q ss_pred CeEeccCCcccccCCCCCCCCcEEEccCCcccc-CCCccccCCCCccEEECcCCccccc-CChhhhCCCCCcEEeccCCc
Q 047152 501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSG-SISFLCSLSNRLIYLDLSNNLLSGK-LPDCWFQFDSLVILNLANNN 578 (776)
Q Consensus 501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~ 578 (776)
.+...+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+
T Consensus 457 ------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 457 ------------YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp ------------HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ------------HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 011114567888888887765 2344556788899999999998754 34445678899999999999
Q ss_pred ccccC
Q 047152 579 FFGKI 583 (776)
Q Consensus 579 l~~~~ 583 (776)
+++.-
T Consensus 525 it~~~ 529 (592)
T 3ogk_B 525 ASMTG 529 (592)
T ss_dssp CCTTC
T ss_pred CCHHH
Confidence 87553
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4e-30 Score=296.13 Aligned_cols=186 Identities=17% Similarity=0.084 Sum_probs=103.5
Q ss_pred CCccccCCCCCCEEecCCCCC---CCCCCccCC------------CCCCCCEEeccCCCCCCCCCchhhcc-C-CCCcEE
Q 047152 129 IPEFLGSLGKLSYLGLSSAEF---AGPIPHQLG------------NLSRLQFLDLSFNNLFSGENLDWLSH-L-SSLIYL 191 (776)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~~~~~~~~~~l~~-l-~~L~~L 191 (776)
.+..+..+++|++|+++++.. .+.+|..++ .+++|++|+|++|.+.. ..+..+.. + ++|++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD-LDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-HHHHHHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH-HHHHHHHHhccccCcEE
Confidence 445667788999999987642 134444333 56777777777776543 23334444 2 337777
Q ss_pred EccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCC----CchhhhcCCCCCCccEEEcCCCCCCC----CchhhHhhcC
Q 047152 192 YLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI----IPSSLLNLNSSNSLEVIDLTENNLTN----SVYPWLFNVS 263 (776)
Q Consensus 192 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~~~~L~~L~Ls~n~l~~----~~~~~l~~~~ 263 (776)
++++|.-.....+.....++++|++|+|++|.+++. ++.....+ ++|++|++++|.+++ .++..+.+++
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~---~~L~~L~L~~n~~~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN---TSLEVLNFYMTEFAKISPKDLETIARNCR 220 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC---CCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC---CCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence 777665222223334445667777777777766554 22333444 666677777666652 2333344555
Q ss_pred CCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCC----CCchhhcccCCCcEEeccC
Q 047152 264 SSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR----GIPKFLGNMCGLKILYLSG 321 (776)
Q Consensus 264 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~----~ip~~l~~l~~L~~L~Ls~ 321 (776)
+ |+.|++++|.+.+ ++..+..+++|++|+++..... ..+..+..+++|+.+++++
T Consensus 221 ~--L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 279 (592)
T 3ogk_B 221 S--LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279 (592)
T ss_dssp T--CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT
T ss_pred C--CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccc
Confidence 5 6666666666554 4455566666666666542211 1223344445555555544
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.7e-27 Score=248.30 Aligned_cols=253 Identities=25% Similarity=0.279 Sum_probs=186.1
Q ss_pred ccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCcccccc--ccHHhhhCCCCCcEEEC
Q 047152 344 LEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGV--ISEALFSNLSRLAALDL 421 (776)
Q Consensus 344 L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~--~~~~~~~~l~~L~~L~L 421 (776)
-+.++.+++.++..+..+ .++|++|++++|.++...+..+..+++|++|++++|.++.. .+. .+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-SDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH-HHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc-ccccccccCEEEC
Confidence 345666666666443322 25677777777777744444466777777777777776532 233 3455667777777
Q ss_pred CCCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCC
Q 047152 422 ADNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGP 501 (776)
Q Consensus 422 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~ 501 (776)
++|.++.. +..+..
T Consensus 86 s~n~i~~l-~~~~~~----------------------------------------------------------------- 99 (306)
T 2z66_A 86 SFNGVITM-SSNFLG----------------------------------------------------------------- 99 (306)
T ss_dssp CSCSEEEE-EEEEET-----------------------------------------------------------------
T ss_pred CCCccccC-hhhcCC-----------------------------------------------------------------
Confidence 76665421 100110
Q ss_pred eEeccCCcccccCCCCCCCCcEEEccCCccccCCC-ccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152 502 GIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSIS-FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF 580 (776)
Q Consensus 502 ~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (776)
+++|++|++++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 100 ----------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 100 ----------------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp ----------------CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred ----------------CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 2345555555555555444 45666788888899888888888888888899999999999887
Q ss_pred c-cCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcC
Q 047152 581 G-KIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLK 659 (776)
Q Consensus 581 ~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 659 (776)
+ .+|..+..+++| ++|++++|++++..|..+..+++|++|+|++|++++..+..+..++
T Consensus 164 ~~~~~~~~~~l~~L--------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 164 ENFLPDIFTELRNL--------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp GGEECSCCTTCTTC--------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred cccchhHHhhCcCC--------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 6 567777766666 7789999999988888999999999999999999987777889999
Q ss_pred CCCeeeCcCceeeecCCccCcCCC-CCCeeeCCCCcceecCCC
Q 047152 660 SLDFLDLSRNQFFGGIPSSLSQLS-GLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 660 ~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~ 701 (776)
+|++|++++|++.+..|..+..++ +|++|++++|+++|.++.
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 999999999999999999999984 999999999999987654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.8e-28 Score=257.79 Aligned_cols=285 Identities=22% Similarity=0.275 Sum_probs=178.3
Q ss_pred CCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCC
Q 047152 67 KRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSS 146 (776)
Q Consensus 67 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~ 146 (776)
...+|.|.|+ |+- ++ ..++ .+|..+. ++|++|++++|.+++. .+..+.++++|++|++++
T Consensus 26 ~~~~C~~~~~-c~~----------~~-----~~l~-~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~ 85 (353)
T 2z80_A 26 ASLSCDRNGI-CKG----------SS-----GSLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTS 85 (353)
T ss_dssp -CCEECTTSE-EEC----------CS-----TTCS-SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTT
T ss_pred cCCCCCCCeE-eeC----------CC-----CCcc-ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCC
Confidence 4567889887 642 23 2333 3454443 5899999999999864 445789999999999999
Q ss_pred CCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCC-CC
Q 047152 147 AEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCD-LP 225 (776)
Q Consensus 147 n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~ 225 (776)
|++++..|..|+++++|++|++++|++.. .....++++++|++|++++|.++.++. ...+.++++|++|++++|. +.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCC
T ss_pred CccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCcccc
Confidence 99998778889999999999999998874 333447778888888888887776421 1245666667777766663 44
Q ss_pred CCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc
Q 047152 226 PIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP 305 (776)
Q Consensus 226 ~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip 305 (776)
+..+..+.++ ++|++|++++|++.+.. |..+..+++|++|++++|.++.+|
T Consensus 164 ~~~~~~~~~l---~~L~~L~l~~n~l~~~~--------------------------~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 164 KIQRKDFAGL---TFLEELEIDASDLQSYE--------------------------PKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp EECTTTTTTC---CEEEEEEEEETTCCEEC--------------------------TTTTTTCSEEEEEEEECSCSTTHH
T ss_pred ccCHHHccCC---CCCCEEECCCCCcCccC--------------------------HHHHhccccCCeecCCCCccccch
Confidence 4444455555 55555555555555444 444445555555555555554443
Q ss_pred hh-hcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccccccc----CCC-ccCCCCCCEEeccCccccc
Q 047152 306 KF-LGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGS----MPN-LGEFSSLKQLNLENNLLNG 379 (776)
Q Consensus 306 ~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~----~~~-l~~l~~L~~L~Ls~n~l~~ 379 (776)
.. +..+++|++|++++|.+++..+..+.... ....++.++++++.+++. +|. +..+++|++|++++|+++
T Consensus 215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~---~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGE---TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp HHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred hhhhhhcccccEEECCCCcccccccccccccc---ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 32 22345555555555555544333222111 111456666666655541 222 667778888888888887
Q ss_pred cchhc-ccCCCCCcEEECCCcccccccc
Q 047152 380 TIHKS-IGQLFKLEMLKLNGNSLGGVIS 406 (776)
Q Consensus 380 ~~~~~-l~~l~~L~~L~L~~N~l~~~~~ 406 (776)
.+|.. +..+++|++|++++|.+.+..|
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 44444 5778888888888888877655
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.7e-27 Score=251.07 Aligned_cols=277 Identities=23% Similarity=0.227 Sum_probs=201.2
Q ss_pred CCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCc
Q 047152 110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI 189 (776)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 189 (776)
.++.....+++++.++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|++.. ..+..++++++|+
T Consensus 29 ~C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCC
Confidence 3444556788899888 4777665 589999999999987666688899999999999998864 3345577777777
Q ss_pred EEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCc-hhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcC
Q 047152 190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP-SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVD 268 (776)
Q Consensus 190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~ 268 (776)
+|++++|.+++++ +..++++++|++|++++|++.+..+ ..+. .+++ |+
T Consensus 104 ~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~---------------------------~l~~--L~ 152 (353)
T 2z80_A 104 HLDLSYNYLSNLS--SSWFKPLSSLTFLNLLGNPYKTLGETSLFS---------------------------HLTK--LQ 152 (353)
T ss_dssp EEECCSSCCSSCC--HHHHTTCTTCSEEECTTCCCSSSCSSCSCT---------------------------TCTT--CC
T ss_pred EEECCCCcCCcCC--HhHhCCCccCCEEECCCCCCcccCchhhhc---------------------------cCCC--Cc
Confidence 7777777776642 2335666666666666666554322 2333 3344 55
Q ss_pred EEEccCC-ccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccE
Q 047152 269 RISLPSN-QLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEW 346 (776)
Q Consensus 269 ~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~ 346 (776)
+|++++| .+.+..+..++.+++|++|++++|.+++ .|..+..+++|++|++++|.+.......+..++ +|++
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~------~L~~ 226 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS------SVEC 226 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT------TEEE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc------cccE
Confidence 5555555 2444456678899999999999999999 688999999999999999999766665666676 8999
Q ss_pred EEcccccccccCCC----ccCCCCCCEEeccCccccc----cchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcE
Q 047152 347 LHLSSNEITGSMPN----LGEFSSLKQLNLENNLLNG----TIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAA 418 (776)
Q Consensus 347 L~L~~n~l~~~~~~----l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~ 418 (776)
|++++|.+++..+. ....+.++.++++++.+++ .+|..+..+++|++|++++|+++ .+|...|..+++|++
T Consensus 227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCE
Confidence 99999999875543 3346677888888887776 35667777888888888888886 455545677778888
Q ss_pred EECCCCcccee
Q 047152 419 LDLADNSLTLE 429 (776)
Q Consensus 419 L~Ls~n~l~~~ 429 (776)
|++++|++.+.
T Consensus 306 L~L~~N~~~~~ 316 (353)
T 2z80_A 306 IWLHTNPWDCS 316 (353)
T ss_dssp EECCSSCBCCC
T ss_pred EEeeCCCccCc
Confidence 88887777643
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.6e-28 Score=254.53 Aligned_cols=266 Identities=23% Similarity=0.251 Sum_probs=165.0
Q ss_pred ccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECC
Q 047152 344 LEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLA 422 (776)
Q Consensus 344 L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 422 (776)
++..+++.+.+...+.. +..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECc
Confidence 34444444444333222 3344556666666666665555566666666666666666654432 5556666666666
Q ss_pred CCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCe
Q 047152 423 DNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPG 502 (776)
Q Consensus 423 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~ 502 (776)
+|++++..+ .++|++|++++|+++
T Consensus 89 ~n~l~~l~~----------------------------------------~~~L~~L~l~~n~l~---------------- 112 (317)
T 3o53_A 89 NNYVQELLV----------------------------------------GPSIETLHAANNNIS---------------- 112 (317)
T ss_dssp SSEEEEEEE----------------------------------------CTTCCEEECCSSCCS----------------
T ss_pred CCccccccC----------------------------------------CCCcCEEECCCCccC----------------
Confidence 665553211 013444444444433
Q ss_pred EeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhh-CCCCCcEEeccCCcccc
Q 047152 503 IDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF-QFDSLVILNLANNNFFG 581 (776)
Q Consensus 503 l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~ 581 (776)
+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++
T Consensus 113 ---------~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 113 ---------RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp ---------EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ---------CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 22222345677777777777777776777777888888888888776666653 67778888888887764
Q ss_pred cCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCC
Q 047152 582 KIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSL 661 (776)
Q Consensus 582 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 661 (776)
. |. ...+ ++|++|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|
T Consensus 184 ~-~~-~~~l--------------------~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 184 V-KG-QVVF--------------------AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp E-EC-CCCC--------------------TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred c-cc-cccc--------------------ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 4 21 1123 334677777888774 4445777788888888888877 467777777788
Q ss_pred CeeeCcCceee-ecCCccCcCCCCCCeeeCC-CCcceecCCC
Q 047152 662 DFLDLSRNQFF-GGIPSSLSQLSGLSVMDLS-YNNLSGKIPL 701 (776)
Q Consensus 662 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~iP~ 701 (776)
+.|++++|++. +.+|..+..++.|+.++++ .+.++|..|.
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 88888888777 6677777777777777777 3455555443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=8.1e-27 Score=244.70 Aligned_cols=249 Identities=21% Similarity=0.237 Sum_probs=151.1
Q ss_pred CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCC-CchhhccCCCCcEEEc
Q 047152 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGE-NLDWLSHLSSLIYLYL 193 (776)
Q Consensus 115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-~~~~l~~l~~L~~L~L 193 (776)
+.++.+++.++ .+|..+. ++|++|++++|+++...+..|+++++|++|++++|.+...+ .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~--~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT--SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc--cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 57888888887 4676554 68999999999998544445788999999999998875311 1345666778888888
Q ss_pred cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCc-hhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEc
Q 047152 194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIP-SSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272 (776)
Q Consensus 194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L 272 (776)
++|.+..+ +..+..+++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+.+..+..+..+++ |++|++
T Consensus 86 s~n~i~~l---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l 157 (306)
T 2z66_A 86 SFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL---RNLIYLDISHTHTRVAFNGIFNGLSS--LEVLKM 157 (306)
T ss_dssp CSCSEEEE---EEEEETCTTCCEEECTTSEEESSTTTTTTTTC---TTCCEEECTTSCCEECSTTTTTTCTT--CCEEEC
T ss_pred CCCccccC---hhhcCCCCCCCEEECCCCcccccccchhhhhc---cCCCEEECCCCcCCccchhhcccCcC--CCEEEC
Confidence 88777653 3446667777777777776665443 344444 55666666655555444444444444 444444
Q ss_pred cCCcccc-CcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc
Q 047152 273 PSNQLQG-SIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS 351 (776)
Q Consensus 273 ~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~ 351 (776)
++|.+++ . +|..+..+++|++|++++|.+++..+..+..++ +|++|++++
T Consensus 158 ~~n~l~~~~-----------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~ 208 (306)
T 2z66_A 158 AGNSFQENF-----------------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------SLQVLNMSH 208 (306)
T ss_dssp TTCEEGGGE-----------------------ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------TCCEEECTT
T ss_pred CCCcccccc-----------------------chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC------CCCEEECCC
Confidence 4444443 2 344444444444555554444444444444444 455555555
Q ss_pred ccccccCCC-ccCCCCCCEEeccCccccccchhcccCCC-CCcEEECCCcccccc
Q 047152 352 NEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLF-KLEMLKLNGNSLGGV 404 (776)
Q Consensus 352 n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~ 404 (776)
|.+++..+. +..+++|++|++++|++++..|..+..++ +|++|++++|.+++.
T Consensus 209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 555544332 45556666666666666666666666553 666666666666543
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.1e-26 Score=241.99 Aligned_cols=276 Identities=19% Similarity=0.230 Sum_probs=181.4
Q ss_pred HhcCCCCCCCCCCCCCCCCCCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCcee----ccccc--cCCCCCCEEeCCC
Q 047152 48 KASLVDESGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGK----ITPAL--LKLQHLTYLDLSR 121 (776)
Q Consensus 48 k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~----~~~~l--~~l~~L~~L~Ls~ 121 (776)
+.++.++..++..|+.. ...++|.|.++.|....+.. .- ....|. ++..+ ...+++++|+|++
T Consensus 22 ~~~~~~~~~aLl~~k~~-~~~~~~~~~~~w~~~~~~~~-----~~-----~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~ 90 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRH-YNADRNRWHSAWRQANSNNP-----QI-----ETRTGRALKATADLLEDATQPGRVALELRS 90 (328)
T ss_dssp -CCCCCHHHHHHHHHHH-HHHCCTTHHHHHHHHTTTCT-----TS-----CCSHHHHHHHHHHHHHHHTSTTCCEEEEES
T ss_pred cccCchHHHHHHHHHHh-ccCCchhhhhhhcccccccc-----cc-----cccCCcchhhhHHHHhcccccceeEEEccC
Confidence 34444555567788631 13578999988873221100 00 112221 11111 3468899999999
Q ss_pred CCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCc
Q 047152 122 NNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNF 201 (776)
Q Consensus 122 n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 201 (776)
|.++ .+|..+.++++|++|+|++|.++ .+|..++++++|++|++++|.+. ..+..++++++|++|++++|++.+.
T Consensus 91 n~l~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 91 VPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp SCCS--SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred CCch--hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccc
Confidence 9998 58888999999999999999999 89999999999999999999987 5567788888888888888766552
Q ss_pred chhhHhhc---------CCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEc
Q 047152 202 SNWVQLLS---------KLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272 (776)
Q Consensus 202 ~~~~~~l~---------~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L 272 (776)
++..+. ++++|++|++++|.++ .+|..+..+ ++|++|++++|++++ +|+.+..+++ |++|++
T Consensus 166 --~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l---~~L~~L~L~~N~l~~-l~~~l~~l~~--L~~L~L 236 (328)
T 4fcg_A 166 --LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL---QNLKSLKIRNSPLSA-LGPAIHHLPK--LEELDL 236 (328)
T ss_dssp --CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC---TTCCEEEEESSCCCC-CCGGGGGCTT--CCEEEC
T ss_pred --cChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC---CCCCEEEccCCCCCc-CchhhccCCC--CCEEEC
Confidence 333333 3666777777666666 455556665 666666666666664 4445556655 666666
Q ss_pred cCCccccCcchhhcCCCCCCEEEccCCCCCC-CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc
Q 047152 273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRG-IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS 351 (776)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~ 351 (776)
++|.+.+.+|..++.+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+..++ +|+.+++..
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~------~L~~l~l~~ 310 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP------ANCIILVPP 310 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC------TTCEEECCG
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc------CceEEeCCH
Confidence 6666666666666666666666666665555 555566666666666666666666666555555 555555554
Q ss_pred ccc
Q 047152 352 NEI 354 (776)
Q Consensus 352 n~l 354 (776)
+.+
T Consensus 311 ~~~ 313 (328)
T 4fcg_A 311 HLQ 313 (328)
T ss_dssp GGS
T ss_pred HHH
Confidence 433
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.6e-25 Score=248.27 Aligned_cols=161 Identities=21% Similarity=0.153 Sum_probs=126.2
Q ss_pred CCCcEEEccCCccccCCCccccCCCCccEEECcCC-cccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEe
Q 047152 519 SNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNN-LLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS 597 (776)
Q Consensus 519 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (776)
++|++|++++|++++..+..+..+++|++|++++| .+....+..|.++++|++|++++|++++. | .+..+++
T Consensus 147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~----- 219 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVG----- 219 (452)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTT-----
T ss_pred CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccccc-----
Confidence 34555555555555555555666778888888874 44433344678888888888888888743 3 2444444
Q ss_pred cCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCc
Q 047152 598 LYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPS 677 (776)
Q Consensus 598 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 677 (776)
|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+.
T Consensus 220 ---------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 220 ---------------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp ---------------CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ---------------ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 47889999999988899999999999999999999988889999999999999999999988888
Q ss_pred cCcCCCCCCeeeCCCCcceecCCC
Q 047152 678 SLSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 678 ~l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
.+..+++|+.|++++|++.|.+..
T Consensus 285 ~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp SSTTCTTCCEEECCSSCEECSTTT
T ss_pred HhccccCCCEEEccCCCcCCCCCc
Confidence 889999999999999999987653
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.9e-26 Score=260.53 Aligned_cols=286 Identities=25% Similarity=0.255 Sum_probs=191.2
Q ss_pred CCCCCCCCCCCCCCCCccceeeC------CCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCC
Q 047152 57 ILSSWRREDEKRDCCKWTGVGCS------KRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIP 130 (776)
Q Consensus 57 ~~~~W~~~~~~~~~c~w~gv~c~------~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p 130 (776)
....|. .+.+||.|+|..|. .....++.|++++ +.+. .+|..+. ++|++|++++|.++. +|
T Consensus 11 ~w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~-----n~L~-~lp~~l~--~~L~~L~L~~N~l~~--lp 77 (622)
T 3g06_A 11 VWSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGE-----SGLT-TLPDCLP--AHITTLVIPDNNLTS--LP 77 (622)
T ss_dssp HHHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCS-----SCCS-CCCSCCC--TTCSEEEECSCCCSC--CC
T ss_pred HHHHHH---hcCCcchhccccccCcccccccCCCCcEEEecC-----CCcC-ccChhhC--CCCcEEEecCCCCCC--CC
Confidence 345676 36678999764321 1123478888888 4555 5666554 789999999998883 66
Q ss_pred ccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcC
Q 047152 131 EFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSK 210 (776)
Q Consensus 131 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 210 (776)
. .+++|++|+|++|+++ .+|. .+++|++|++++|++.. .+. .+++|++|++++|.++.++. .
T Consensus 78 ~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~L~L~~N~l~~lp~------~ 139 (622)
T 3g06_A 78 A---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH--LPA---LPSGLCKLWIFGNQLTSLPV------L 139 (622)
T ss_dssp C---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC--CCC---CCTTCCEEECCSSCCSCCCC------C
T ss_pred C---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC--CCC---CCCCcCEEECCCCCCCcCCC------C
Confidence 5 5788999999999888 4665 67888999999988864 222 56788888888888887543 2
Q ss_pred CCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCC
Q 047152 211 LHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVS 290 (776)
Q Consensus 211 l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 290 (776)
+++|++|++++|.+++. |. .. .+|+.|++++|.+++ +| ..+++ |+.|++++|++++ +|. .+++
T Consensus 140 l~~L~~L~Ls~N~l~~l-~~---~~---~~L~~L~L~~N~l~~-l~---~~~~~--L~~L~Ls~N~l~~-l~~---~~~~ 202 (622)
T 3g06_A 140 PPGLQELSVSDNQLASL-PA---LP---SELCKLWAYNNQLTS-LP---MLPSG--LQELSVSDNQLAS-LPT---LPSE 202 (622)
T ss_dssp CTTCCEEECCSSCCSCC-CC---CC---TTCCEEECCSSCCSC-CC---CCCTT--CCEEECCSSCCSC-CCC---CCTT
T ss_pred CCCCCEEECcCCcCCCc-CC---cc---CCCCEEECCCCCCCC-Cc---ccCCC--CcEEECCCCCCCC-CCC---ccch
Confidence 47888888888887763 22 12 667777888777765 33 23344 7777777777765 332 2366
Q ss_pred CCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEE
Q 047152 291 LRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQL 370 (776)
Q Consensus 291 L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L 370 (776)
|+.|++++|.++.+|.. +++|++|++++|.+++.. ..++ +|++|++++|.++.. |. .+++|+.|
T Consensus 203 L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp----~~l~------~L~~L~Ls~N~L~~l-p~--~~~~L~~L 266 (622)
T 3g06_A 203 LYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP----VLPS------ELKELMVSGNRLTSL-PM--LPSGLLSL 266 (622)
T ss_dssp CCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC----CCCT------TCCEEECCSSCCSCC-CC--CCTTCCEE
T ss_pred hhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC----CCCC------cCcEEECCCCCCCcC-Cc--ccccCcEE
Confidence 77777777777776643 356777777777766532 1222 677777777776643 32 45667777
Q ss_pred eccCccccccchhcccCCCCCcEEECCCccccccccH
Q 047152 371 NLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISE 407 (776)
Q Consensus 371 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 407 (776)
++++|+++ .+|..+..+++|+.|++++|.+++..+.
T Consensus 267 ~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred eCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 77777766 5566666677777777777776665554
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=246.47 Aligned_cols=252 Identities=24% Similarity=0.227 Sum_probs=174.0
Q ss_pred ccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCC
Q 047152 344 LEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLAD 423 (776)
Q Consensus 344 L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 423 (776)
.+.++.++..++..+..+. ++++.|++++|++++..+..|.++++|++|++++|.+++..+. .|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG-GGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh-hccCCccCCEEECCC
Confidence 4455555555553333232 4566666666666665556666666666666666666544333 566666666666666
Q ss_pred CccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeE
Q 047152 424 NSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGI 503 (776)
Q Consensus 424 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l 503 (776)
|+++...+..+..
T Consensus 122 n~l~~~~~~~~~~------------------------------------------------------------------- 134 (440)
T 3zyj_A 122 NRLTTIPNGAFVY------------------------------------------------------------------- 134 (440)
T ss_dssp SCCSSCCTTTSCS-------------------------------------------------------------------
T ss_pred CcCCeeCHhHhhc-------------------------------------------------------------------
Confidence 6555322222211
Q ss_pred eccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCc-ccccCChhhhCCCCCcEEeccCCccccc
Q 047152 504 DISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNL-LSGKLPDCWFQFDSLVILNLANNNFFGK 582 (776)
Q Consensus 504 ~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 582 (776)
+++|++|++++|++++..+..+..+++|++|++++|+ +....+..|.++++|++|++++|+++ .
T Consensus 135 --------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 135 --------------LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp --------------CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred --------------cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 2344455555555554445556667778888888744 44333446778888888888888887 3
Q ss_pred CCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCC
Q 047152 583 IPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLD 662 (776)
Q Consensus 583 ~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 662 (776)
+|. +..+++ |++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+
T Consensus 200 ~~~-~~~l~~--------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 200 IPN-LTPLIK--------------------LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp CCC-CTTCSS--------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred ccc-cCCCcc--------------------cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 442 444444 47889999999988889999999999999999999988888899999999
Q ss_pred eeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152 663 FLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 663 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
+|+|++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 999999999988888889999999999999999887653
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.2e-26 Score=236.56 Aligned_cols=165 Identities=19% Similarity=0.115 Sum_probs=105.8
Q ss_pred ccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEE
Q 047152 537 FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKIL 616 (776)
Q Consensus 537 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L 616 (776)
..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..+..++.+++| ++|
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------~~L 158 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------------THL 158 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------CEE
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------------cEE
Confidence 334445666666666666666556666666667777777776665555555555555 556
Q ss_pred EccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcce
Q 047152 617 DLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLS 696 (776)
Q Consensus 617 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 696 (776)
++++|++++..+..+..+++|++|++++|++++..|..++.+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 66777776555556777777777777777777666777777777777777777777665566777777777777777777
Q ss_pred ecCCCCCcccccccccccCCCCCCC
Q 047152 697 GKIPLGTQLQSFNELVYAGNPELCG 721 (776)
Q Consensus 697 g~iP~~~~~~~~~~~~~~gN~~lc~ 721 (776)
|.++....+..+.......+...|.
T Consensus 239 c~~~~~~~~~~l~~~~~~~~~~~c~ 263 (285)
T 1ozn_A 239 CDCRARPLWAWLQKFRGSSSEVPCS 263 (285)
T ss_dssp CSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred CCCCcHHHHHHHHhcccccCccccC
Confidence 7665433333333333444444443
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=6.3e-26 Score=235.24 Aligned_cols=223 Identities=23% Similarity=0.205 Sum_probs=145.4
Q ss_pred EEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCE
Q 047152 86 NKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQF 165 (776)
Q Consensus 86 ~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 165 (776)
+.++.++ .++. .+|..+ .++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..|+++++|++
T Consensus 14 ~~~~c~~-----~~l~-~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQ-----QGLQ-AVPVGI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84 (285)
T ss_dssp CEEECCS-----SCCS-SCCTTC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred eEEEcCc-----CCcc-cCCcCC--CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCE
Confidence 4567766 3443 234333 46889999999988864 5567888899999999999888777888888899999
Q ss_pred EeccCCC-CCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEE
Q 047152 166 LDLSFNN-LFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVI 244 (776)
Q Consensus 166 L~Ls~n~-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L 244 (776)
|++++|. +.. ..+..+.++++|++|++++|.+++.. +..+.++++|++|++++|.+.+..+..+..+ ++|++|
T Consensus 85 L~l~~n~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L 158 (285)
T 1ozn_A 85 LDLSDNAQLRS-VDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTFRDL---GNLTHL 158 (285)
T ss_dssp EECCSCTTCCC-CCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCEE
T ss_pred EeCCCCCCccc-cCHHHhcCCcCCCEEECCCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCHhHhccC---CCccEE
Confidence 9998887 543 44566777777777777777777642 3556667777777777777766655556555 666666
Q ss_pred EcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCc-hhhcccCCCcEEeccCCc
Q 047152 245 DLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKE 323 (776)
Q Consensus 245 ~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~n~ 323 (776)
++++|++++..+..+..+++ |+.|++++|.+++..|..+..+++|++|++++|.++++| ..+..+++|++|++++|.
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHS--LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTT--CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ECCCCcccccCHHHhcCccc--cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 66666665443334555555 555555555555555555555555555555555555533 234555555555555555
Q ss_pred CC
Q 047152 324 LK 325 (776)
Q Consensus 324 l~ 325 (776)
+.
T Consensus 237 ~~ 238 (285)
T 1ozn_A 237 WV 238 (285)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=8.1e-28 Score=252.72 Aligned_cols=270 Identities=24% Similarity=0.252 Sum_probs=147.2
Q ss_pred CCCCCCCCCCCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCcccc---
Q 047152 58 LSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLG--- 134 (776)
Q Consensus 58 ~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~--- 134 (776)
..+|. ....|+.+..+.......+++.+++++ +.+ .+|..+... |++|+|++|.+....+|..+.
T Consensus 21 ~~~~~---~~~~c~~~~~~~~~~~~~~L~~l~l~~-----n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~ 88 (312)
T 1wwl_A 21 KPDWS---SAFNCLGAADVELYGGGRSLEYLLKRV-----DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGA 88 (312)
T ss_dssp SCCGG---GGGGSSSCSEEEEEEEEEECTTHHHHC-----CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHH
T ss_pred ccchH---HHhhhhccccEEEEccCCCceeEeecc-----ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHH
Confidence 34565 234555555443322223455555555 344 455544443 677777777764334565554
Q ss_pred ----CCCCCCEEecCCCCCCCCCCccC--CCCCCCCEEeccCCCCCCCCCchhhccC-----CCCcEEEccCCCCCCcch
Q 047152 135 ----SLGKLSYLGLSSAEFAGPIPHQL--GNLSRLQFLDLSFNNLFSGENLDWLSHL-----SSLIYLYLDLNDLSNFSN 203 (776)
Q Consensus 135 ----~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~~~~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~ 203 (776)
++++|++|++++|++++.+|..+ +.+++|++|++++|++.+. +..++.+ ++|++|++++|++.+.+
T Consensus 89 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~- 165 (312)
T 1wwl_A 89 LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFS- 165 (312)
T ss_dssp HHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCC-
T ss_pred HHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccch-
Confidence 57777777777777777777665 6777777777777776542 4445444 56666666666665532
Q ss_pred hhHhhcCCCCCCEEEccCCCCCCCC--chhh--hcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCcccc
Q 047152 204 WVQLLSKLHSLTTLSLYSCDLPPII--PSSL--LNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQG 279 (776)
Q Consensus 204 ~~~~l~~l~~L~~L~L~~n~l~~~~--~~~l--~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~ 279 (776)
+..++++++|++|++++|++.+.. +..+ ..+ ++|++|++++|++++. + .
T Consensus 166 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l---~~L~~L~L~~N~l~~~-~----------------------~ 218 (312)
T 1wwl_A 166 -CEQVRVFPALSTLDLSDNPELGERGLISALCPLKF---PTLQVLALRNAGMETP-S----------------------G 218 (312)
T ss_dssp -TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC---TTCCEEECTTSCCCCH-H----------------------H
T ss_pred -HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC---CCCCEEECCCCcCcch-H----------------------H
Confidence 244555555666666555554431 2222 333 5555555555555421 0 1
Q ss_pred CcchhhcCCCCCCEEEccCCCCCCCc--hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccccccc
Q 047152 280 SIPEAFGRMVSLRYLDLSSNELRGIP--KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGS 357 (776)
Q Consensus 280 ~~p~~l~~l~~L~~L~L~~n~l~~ip--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~ 357 (776)
.....+..+++|++|++++|.+++.+ ..+..+++|++|++++|.++ .+|..+. + +|++|++++|++++.
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~------~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A------KLSVLDLSYNRLDRN 289 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S------EEEEEECCSSCCCSC
T ss_pred HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C------CceEEECCCCCCCCC
Confidence 11122334455555555555555522 23344555555555555555 3333222 2 567777777777655
Q ss_pred CCCccCCCCCCEEeccCccccc
Q 047152 358 MPNLGEFSSLKQLNLENNLLNG 379 (776)
Q Consensus 358 ~~~l~~l~~L~~L~Ls~n~l~~ 379 (776)
|.+..+++|++|++++|++++
T Consensus 290 -p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 290 -PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -CCTTTSCEEEEEECTTCTTTC
T ss_pred -hhHhhCCCCCEEeccCCCCCC
Confidence 446677777777777777664
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=3.9e-25 Score=245.09 Aligned_cols=246 Identities=24% Similarity=0.272 Sum_probs=150.3
Q ss_pred CCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEc
Q 047152 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYL 193 (776)
Q Consensus 114 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L 193 (776)
.+.++.++..++ .+|..+. +++++|+|++|++++..|..|+++++|++|+|++|.+.. ..+..|.++++|++|+|
T Consensus 56 ~~~v~c~~~~l~--~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS--EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC--ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEEC
Confidence 567777777776 4666554 678888888888887777778888888888888887764 34455666667777777
Q ss_pred cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEcc
Q 047152 194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLP 273 (776)
Q Consensus 194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~ 273 (776)
++|+++.++ +..+..+++|++|++++|.+....+..+.++ ++|++|++++|+..
T Consensus 131 ~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~l~~~~~l--------------------- 184 (452)
T 3zyi_A 131 FDNWLTVIP--SGAFEYLSKLRELWLRNNPIESIPSYAFNRV---PSLMRLDLGELKKL--------------------- 184 (452)
T ss_dssp CSSCCSBCC--TTTSSSCTTCCEEECCSCCCCEECTTTTTTC---TTCCEEECCCCTTC---------------------
T ss_pred CCCcCCccC--hhhhcccCCCCEEECCCCCcceeCHhHHhcC---CcccEEeCCCCCCc---------------------
Confidence 666666542 2345566666666666666655444455544 55555555543221
Q ss_pred CCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccc
Q 047152 274 SNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE 353 (776)
Q Consensus 274 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~ 353 (776)
....+..|..+++|++|++++|+++++|. +..+++|++|++++|.+++..+..+..++ +|++|++++|+
T Consensus 185 ----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~L~~n~ 253 (452)
T 3zyi_A 185 ----EYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLS------SLKKLWVMNSQ 253 (452)
T ss_dssp ----CEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCT------TCCEEECTTSC
T ss_pred ----cccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCcc------CCCEEEeCCCc
Confidence 11222346677777777777777777653 55666666666666666666565555555 55555555555
Q ss_pred ccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccc
Q 047152 354 ITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSL 401 (776)
Q Consensus 354 l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l 401 (776)
+++..+. +..+++|+.|++++|++++..+..+..+++|+.|++++|.+
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 5544443 44555555555555555544444444455555555555543
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.8e-27 Score=246.84 Aligned_cols=254 Identities=22% Similarity=0.191 Sum_probs=176.0
Q ss_pred cCCCCCCEEeccCccccccchhcccCCCCCcEEECCCcccc-ccccHHhhh-------CCCCCcEEECCCCccceecCCC
Q 047152 362 GEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLG-GVISEALFS-------NLSRLAALDLADNSLTLEFSHD 433 (776)
Q Consensus 362 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~ 433 (776)
+..++|+.|++++|.+ .+|..+... |+.|++++|.+. +.++. .+. ++++|++|++++|++++..+..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPS-RILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBH-HHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCH-HHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3455677777777777 555555443 777777777773 34444 232 5777888888888777666655
Q ss_pred C--CCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCccc
Q 047152 434 W--IPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFE 511 (776)
Q Consensus 434 ~--~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~ 511 (776)
+ ..+++|++|++++|++++. |..+.....
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~------------------------------------------------ 145 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQ------------------------------------------------ 145 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT------------------------------------------------
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHH------------------------------------------------
Confidence 4 4555555555555554433 322221100
Q ss_pred ccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCccccc--CChhh--hCCCCCcEEeccCCccccc--CC-
Q 047152 512 GPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGK--LPDCW--FQFDSLVILNLANNNFFGK--IP- 584 (776)
Q Consensus 512 g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~--~p- 584 (776)
..+++|++|++++|++++..+..+..+++|++|++++|++.+. .|..+ ..+++|++|++++|++++. ++
T Consensus 146 ----~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 146 ----WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp ----TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred ----hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 0125677777777777777777777888888888888887765 33344 7788888888888888631 11
Q ss_pred ccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCc-hhhhccccCCEEECcCCcccCcCcccccCcCCCCe
Q 047152 585 NSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVP-KEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDF 663 (776)
Q Consensus 585 ~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 663 (776)
..+.. +++|++|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++
T Consensus 222 ~~~~~--------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 222 ALAAA--------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSV 278 (312)
T ss_dssp HHHHT--------------------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEE
T ss_pred HHHhc--------------------CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceE
Confidence 11223 3445888999999998775 45667899999999999998 7888877 89999
Q ss_pred eeCcCceeeecCCccCcCCCCCCeeeCCCCcceec
Q 047152 664 LDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGK 698 (776)
Q Consensus 664 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 698 (776)
||+++|++++. |. +..+++|++|++++|++++.
T Consensus 279 L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 279 LDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred EECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 99999999866 66 88999999999999999763
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8.7e-25 Score=248.34 Aligned_cols=262 Identities=26% Similarity=0.262 Sum_probs=164.6
Q ss_pred CccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECC
Q 047152 343 SLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLA 422 (776)
Q Consensus 343 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 422 (776)
+++.|++++|.++..++.+. ++|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV----LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC----CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC----CCCCCCEEECc
Confidence 45666666666653322232 56666666666665 3333 34566666666666643 332 44566666666
Q ss_pred CCccceecCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCe
Q 047152 423 DNSLTLEFSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPG 502 (776)
Q Consensus 423 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~ 502 (776)
+|++++... .+.+|+.|++++|++++ +|.. .++|++|
T Consensus 110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~--------------l~~L~~L------------------------ 146 (622)
T 3g06_A 110 SNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL--------------PPGLQEL------------------------ 146 (622)
T ss_dssp SCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC--------------CTTCCEE------------------------
T ss_pred CCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC--------------CCCCCEE------------------------
Confidence 665553211 22333444444433321 1110 1233333
Q ss_pred EeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccccc
Q 047152 503 IDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGK 582 (776)
Q Consensus 503 l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 582 (776)
++++|++++ +|..+.+|+.|++++|++++.. ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++ .
T Consensus 147 -~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~ 215 (622)
T 3g06_A 147 -SVSDNQLAS-LPALPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-S 215 (622)
T ss_dssp -ECCSSCCSC-CCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-S
T ss_pred -ECcCCcCCC-cCCccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-c
Confidence 444443332 3334567777888888777643 345778888888888774 4432 467778888887776 3
Q ss_pred CCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCC
Q 047152 583 IPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLD 662 (776)
Q Consensus 583 ~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 662 (776)
+|. .+++|+.|++++|++++ +| ..+++|+.|+|++|+++ .+|. .+++|+
T Consensus 216 l~~-----------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~ 264 (622)
T 3g06_A 216 LPA-----------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLL 264 (622)
T ss_dssp CCC-----------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred cCC-----------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCc
Confidence 343 22445888999999985 66 45688999999999998 5666 678899
Q ss_pred eeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152 663 FLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 663 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
.|+|++|+++ .+|..+.++++|+.|++++|++++.+|.
T Consensus 265 ~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 9999999998 7788899999999999999999987774
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.3e-27 Score=248.67 Aligned_cols=248 Identities=22% Similarity=0.186 Sum_probs=120.2
Q ss_pred CCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCC
Q 047152 99 PLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGEN 178 (776)
Q Consensus 99 ~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 178 (776)
.+...+...+..+++|++|+|++|.+++. .|..+..+++|++|+|++|++++..| +..+++|++|++++|.+
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l----- 92 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV----- 92 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE-----
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc-----
Confidence 33333333344455666666666666543 44555666666666666666554332 55555555555555554
Q ss_pred chhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhh
Q 047152 179 LDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPW 258 (776)
Q Consensus 179 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~ 258 (776)
++++ ..++|++|++++|.+++..+.. + ++|++|++++|++++..+..
T Consensus 93 --------------------~~l~-------~~~~L~~L~l~~n~l~~~~~~~---~---~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 93 --------------------QELL-------VGPSIETLHAANNNISRVSCSR---G---QGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp --------------------EEEE-------ECTTCCEEECCSSCCSEEEECC---C---SSCEEEECCSSCCCSGGGBC
T ss_pred --------------------cccc-------CCCCcCEEECCCCccCCcCccc---c---CCCCEEECCCCCCCCccchh
Confidence 3211 1244555555555444433221 2 45556666666555544444
Q ss_pred HhhcCCCCcCEEEccCCccccCcchhh-cCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccC
Q 047152 259 LFNVSSSLVDRISLPSNQLQGSIPEAF-GRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSS 337 (776)
Q Consensus 259 l~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 337 (776)
+..+++ |++|++++|.+++..+..+ ..+++|++|++++|.++++|.. ..+++|++|++++|.+++..+. +..++
T Consensus 140 ~~~l~~--L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~~l~- 214 (317)
T 3o53_A 140 EGCRSR--VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAA- 214 (317)
T ss_dssp TGGGSS--EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGT-
T ss_pred hhccCC--CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh-hcccC-
Confidence 444555 5555555555555444444 3456666666666666554322 2244455555555554433222 33333
Q ss_pred CCcCCCccEEEcccccccccCCCccCCCCCCEEeccCcccc-ccchhcccCCCCCcEEECC
Q 047152 338 GCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLN-GTIHKSIGQLFKLEMLKLN 397 (776)
Q Consensus 338 ~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~ 397 (776)
+|++|++++|++++..+.+..+++|+.|++++|.+. +.+|..+..+++|+.++++
T Consensus 215 -----~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 215 -----GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp -----TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred -----cccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 444444444444433222444444444444444444 3334444444444444433
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.5e-26 Score=254.83 Aligned_cols=237 Identities=24% Similarity=0.251 Sum_probs=129.9
Q ss_pred CCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcE
Q 047152 363 EFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNT 442 (776)
Q Consensus 363 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 442 (776)
.+++|++|++++|.+++..|..+..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~---------- 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG---------- 98 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC----------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC----------
Confidence 34466677777776666666666667777777777776665443 56666666666666666532210
Q ss_pred EEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCc
Q 047152 443 ISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNAT 522 (776)
Q Consensus 443 L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~ 522 (776)
++|++|++++|.++ +..+..+++|+
T Consensus 99 ------------------------------~~L~~L~L~~N~l~-------------------------~~~~~~l~~L~ 123 (487)
T 3oja_A 99 ------------------------------PSIETLHAANNNIS-------------------------RVSCSRGQGKK 123 (487)
T ss_dssp ------------------------------TTCCEEECCSSCCC-------------------------CEEECCCSSCE
T ss_pred ------------------------------CCcCEEECcCCcCC-------------------------CCCccccCCCC
Confidence 12333333333333 22222234566
Q ss_pred EEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhh-CCCCCcEEeccCCcccccCCccccccCCCcEEecCCC
Q 047152 523 SLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF-QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNR 601 (776)
Q Consensus 523 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~ 601 (776)
.|++++|.+++..|..+..+++|++|+|++|.+++..|..+. .+++|+.|+|++|.+++..+ ...++
T Consensus 124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~---------- 191 (487)
T 3oja_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFA---------- 191 (487)
T ss_dssp EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCT----------
T ss_pred EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCC----------
Confidence 666666666666565566666666666666666665555554 56666666666666654321 11122
Q ss_pred cccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceee-ecCCccCc
Q 047152 602 SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFF-GGIPSSLS 680 (776)
Q Consensus 602 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~ 680 (776)
.|+.|+|++|.+++ +|..++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+.
T Consensus 192 ----------~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 192 ----------KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp ----------TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ----------CCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 22455555555554 33335555555555555555553 4555555555555555555555 44445555
Q ss_pred CCCCCCeeeCC
Q 047152 681 QLSGLSVMDLS 691 (776)
Q Consensus 681 ~l~~L~~L~ls 691 (776)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 55555544443
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=7.8e-28 Score=277.14 Aligned_cols=213 Identities=13% Similarity=0.160 Sum_probs=98.3
Q ss_pred CCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCC--CCCc------------cc
Q 047152 68 RDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGS--SIPE------------FL 133 (776)
Q Consensus 68 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~--~~p~------------~~ 133 (776)
.-|++|.++... ..+.+++..+ .. ......+.++++|++|+++++..... ..|. ..
T Consensus 32 ~vck~W~~~~~~----~~~~l~~~~~----~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~ 101 (594)
T 2p1m_B 32 LVCKSWYEIERW----CRRKVFIGNC----YA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMS 101 (594)
T ss_dssp TSCHHHHHHHHH----HCCEEEESST----TS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHH
T ss_pred HHHHHHHHhhhh----hceEEeeccc----cc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHH
Confidence 346689888321 2345666552 11 11223467788899999988752210 0111 12
Q ss_pred cCCCCCCEEecCCCCCCCCCCccCC-CCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCC
Q 047152 134 GSLGKLSYLGLSSAEFAGPIPHQLG-NLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLH 212 (776)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 212 (776)
..+++|++|+|++|.+++..+..+. .+++|++|++++|. .++. ..++..+.+++
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~------------------------~~~~-~~l~~~~~~~~ 156 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE------------------------GFST-DGLAAIAATCR 156 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE------------------------EEEH-HHHHHHHHHCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC------------------------CCCH-HHHHHHHHhCC
Confidence 2345555555555555544443333 34555555555542 1211 11223333455
Q ss_pred CCCEEEccCCCCCCCCchhhhcCC-CCCCccEEEcCCCC--CCCC-chhhHhhcCCCCcCEEEccCCccccCcchhhcCC
Q 047152 213 SLTTLSLYSCDLPPIIPSSLLNLN-SSNSLEVIDLTENN--LTNS-VYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRM 288 (776)
Q Consensus 213 ~L~~L~L~~n~l~~~~~~~l~~l~-~~~~L~~L~Ls~n~--l~~~-~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 288 (776)
+|++|++++|.+++..+..+..+. .+++|++|++++|. +... +......+++ |++|++++|...+.++..+..+
T Consensus 157 ~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~--L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN--LKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT--CCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC--CcEEecCCCCcHHHHHHHHhcC
Confidence 555555555554444333333221 22455555555554 1111 1111223344 5555555552222245555555
Q ss_pred CCCCEEEccCCC-------CCCCchhhcccCCCcEE
Q 047152 289 VSLRYLDLSSNE-------LRGIPKFLGNMCGLKIL 317 (776)
Q Consensus 289 ~~L~~L~L~~n~-------l~~ip~~l~~l~~L~~L 317 (776)
++|++|+++.+. +.+++..+.++++|+.+
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence 666666544432 12233344555555555
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=240.77 Aligned_cols=249 Identities=24% Similarity=0.272 Sum_probs=151.1
Q ss_pred CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEE
Q 047152 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY 192 (776)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 192 (776)
..+.++.++..++ .+|..+. +++++|+|++|++++..+..|.++++|++|+|++|.+.. ..+..|.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~--~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR--EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS--SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC--cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEE
Confidence 4678888888887 4777665 688999999999987777888888888888888888764 3445666677777777
Q ss_pred ccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEc
Q 047152 193 LDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272 (776)
Q Consensus 193 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L 272 (776)
|++|+++.++ +..+..+++|++|++++|.+....+..+..+ ++|++|++++|+.
T Consensus 119 L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l---~~L~~L~l~~~~~--------------------- 172 (440)
T 3zyj_A 119 LFDNRLTTIP--NGAFVYLSKLKELWLRNNPIESIPSYAFNRI---PSLRRLDLGELKR--------------------- 172 (440)
T ss_dssp CCSSCCSSCC--TTTSCSCSSCCEEECCSCCCCEECTTTTTTC---TTCCEEECCCCTT---------------------
T ss_pred CCCCcCCeeC--HhHhhccccCceeeCCCCcccccCHHHhhhC---cccCEeCCCCCCC---------------------
Confidence 7776666542 2345555555555555555554444444444 4444444444322
Q ss_pred cCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccc
Q 047152 273 PSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSN 352 (776)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n 352 (776)
+....+..|.++++|++|++++|.++.+|. +..+++|++|++++|.+++..+..
T Consensus 173 ----l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~--------------------- 226 (440)
T 3zyj_A 173 ----LSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGS--------------------- 226 (440)
T ss_dssp ----CCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTT---------------------
T ss_pred ----cceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhh---------------------
Confidence 122223356667777777777777776653 444555555555555544444444
Q ss_pred cccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccc
Q 047152 353 EITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLT 427 (776)
Q Consensus 353 ~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 427 (776)
+..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+. .|..+++|+.|++++|++.
T Consensus 227 --------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 227 --------FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD-LFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp --------TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT-TTSSCTTCCEEECCSSCEE
T ss_pred --------hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh-HhccccCCCEEEcCCCCcc
Confidence 44445555555555555555555555555666666666655533332 4555666666666666654
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.6e-27 Score=272.82 Aligned_cols=404 Identities=12% Similarity=0.053 Sum_probs=199.7
Q ss_pred cCCCCCCEEEccCCCCCCCCchhhh-cCCCCCCccEEEcCCC-CCCCC-chhhHhhcCCCCcCEEEccCCccccCcchhh
Q 047152 209 SKLHSLTTLSLYSCDLPPIIPSSLL-NLNSSNSLEVIDLTEN-NLTNS-VYPWLFNVSSSLVDRISLPSNQLQGSIPEAF 285 (776)
Q Consensus 209 ~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~~~~L~~L~Ls~n-~l~~~-~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l 285 (776)
..+++|++|++++|.+++..+..+. .+ ++|++|++++| .++.. ++....++++ |++|++++|.+++..+..+
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~---~~L~~L~L~~~~~~~~~~l~~~~~~~~~--L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSF---KNFKVLVLSSCEGFSTDGLAAIAATCRN--LKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHC---TTCCEEEEESCEEEEHHHHHHHHHHCTT--CCEEECTTCEEECCCGGGG
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhC---CCCcEEeCCCcCCCCHHHHHHHHHhCCC--CCEEeCcCCccCCcchHHH
Confidence 4455666666666655544444443 34 56666666665 33322 2233335555 6666666666655443333
Q ss_pred ----cCCCCCCEEEccCCC--CCC--CchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccc-----
Q 047152 286 ----GRMVSLRYLDLSSNE--LRG--IPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSN----- 352 (776)
Q Consensus 286 ----~~l~~L~~L~L~~n~--l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n----- 352 (776)
..+++|++|++++|. ++. ++..+..+++|++|++++|...+.++..+..++ +|++|+++.+
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~------~L~~L~l~~~~~~~~ 250 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP------QLEELGTGGYTAEVR 250 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT------TCSEEECSBCCCCCC
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC------cceEcccccccCccc
Confidence 256677777777775 221 223334567777777777733333566666666 7777774433
Q ss_pred --cccccCCCccCCCCCCEE-eccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCcccee
Q 047152 353 --EITGSMPNLGEFSSLKQL-NLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLE 429 (776)
Q Consensus 353 --~l~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 429 (776)
.+.+..+.+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++......+..+++|++|++++| +...
T Consensus 251 ~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~ 328 (594)
T 2p1m_B 251 PDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA 328 (594)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH
T ss_pred hhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH
Confidence 333333345666777776 3333222 2344444456677777777777654433333556677777777665 3211
Q ss_pred cCCCCCCCCCCcEEEccCcCCCCCCchhhhccCCCCchhhhccCcccEEEcccccCcccCCcccccccCCCCeEeccCCc
Q 047152 430 FSHDWIPPFQLNTISLGHCKMGPRFPKWLQTQNTVPNWFWDLTHQRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNH 509 (776)
Q Consensus 430 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~ 509 (776)
... .+...+++|+.|++..+.-.|. ...+.
T Consensus 329 ~l~----------------------------------~l~~~~~~L~~L~L~~~~~~g~----------------~~~~~ 358 (594)
T 2p1m_B 329 GLE----------------------------------VLASTCKDLRELRVFPSEPFVM----------------EPNVA 358 (594)
T ss_dssp HHH----------------------------------HHHHHCTTCCEEEEECSCTTCS----------------SCSSC
T ss_pred HHH----------------------------------HHHHhCCCCCEEEEecCccccc----------------ccCCC
Confidence 000 0111223444554432210000 00000
Q ss_pred cccc----CCCCCCCCcEEEccCCccccCCCcccc-CCCCccEEECc--C----Ccccc-----cCChhhhCCCCCcEEe
Q 047152 510 FEGP----IPPLPSNATSLNLSKNKFSGSISFLCS-LSNRLIYLDLS--N----NLLSG-----KLPDCWFQFDSLVILN 573 (776)
Q Consensus 510 l~g~----~p~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~-----~~p~~~~~l~~L~~L~ 573 (776)
+++. +...+++|++|++..|.+++.....+. .+++|+.|+++ + |.+++ .++..+..+++|+.|+
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 0000 000023344444444443332222221 24444444444 2 23321 1111133444444444
Q ss_pred ccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhh-hccccCCEEECcCCcccCcCc
Q 047152 574 LANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEI-MDLVGLVALNLSRNNLTGQIT 652 (776)
Q Consensus 574 Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p 652 (776)
+++ .+++..+..+.. .+++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+
T Consensus 439 L~~-~l~~~~~~~l~~-------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 439 LSG-LLTDKVFEYIGT-------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp CCS-SCCHHHHHHHHH-------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred ecC-cccHHHHHHHHH-------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 443 333222222211 24455777788887766555554 567788888888888764433
Q ss_pred c-cccCcCCCCeeeCcCceeeecCCccC-cCCCCCCeeeCCCCcc
Q 047152 653 P-KIGQLKSLDFLDLSRNQFFGGIPSSL-SQLSGLSVMDLSYNNL 695 (776)
Q Consensus 653 ~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l 695 (776)
. .+..+++|++|++++|+++......+ ..++.|+...+..+.-
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 3 33457788888888887754433333 3456665555555443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.2e-25 Score=247.11 Aligned_cols=234 Identities=23% Similarity=0.196 Sum_probs=135.8
Q ss_pred CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEE
Q 047152 113 HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLY 192 (776)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 192 (776)
+|++|+|++|.+++. .|..|+.+++|++|+|++|.+++..| ++.+++|++|+|++|.+
T Consensus 35 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l------------------- 92 (487)
T 3oja_A 35 NVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV------------------- 92 (487)
T ss_dssp GCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEE-------------------
T ss_pred CccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcC-------------------
Confidence 555555555555543 44455555555555555555554333 55555555555555544
Q ss_pred ccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEc
Q 047152 193 LDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISL 272 (776)
Q Consensus 193 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L 272 (776)
++++ ..++|++|++++|.+++..+.. + ++|+.|++++|.+++..|..+..+++ |+.|++
T Consensus 93 ------~~l~-------~~~~L~~L~L~~N~l~~~~~~~---l---~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L 151 (487)
T 3oja_A 93 ------QELL-------VGPSIETLHAANNNISRVSCSR---G---QGKKNIYLANNKITMLRDLDEGCRSR--VQYLDL 151 (487)
T ss_dssp ------EEEE-------ECTTCCEEECCSSCCCCEEECC---C---SSCEEEECCSSCCCSGGGBCGGGGSS--EEEEEC
T ss_pred ------CCCC-------CCCCcCEEECcCCcCCCCCccc---c---CCCCEEECCCCCCCCCCchhhcCCCC--CCEEEC
Confidence 3321 1245555555555555543322 2 55666666666666655656666666 666666
Q ss_pred cCCccccCcchhhc-CCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccc
Q 047152 273 PSNQLQGSIPEAFG-RMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSS 351 (776)
Q Consensus 273 ~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~ 351 (776)
++|.+++..|..+. .+++|++|+|++|.++++|.. ..+++|++|++++|.+++.++. +..++ +|+.|++++
T Consensus 152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~l~------~L~~L~Ls~ 223 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAA------GVTWISLRN 223 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGT------TCSEEECTT
T ss_pred CCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCHh-HcCCC------CccEEEecC
Confidence 66666666666654 567777777777777765432 2466666666666666654443 55555 666666666
Q ss_pred ccccccCCCccCCCCCCEEeccCcccc-ccchhcccCCCCCcEEECC
Q 047152 352 NEITGSMPNLGEFSSLKQLNLENNLLN-GTIHKSIGQLFKLEMLKLN 397 (776)
Q Consensus 352 n~l~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~ 397 (776)
|.+++.++.+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 224 N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 666654444666666666666666666 4555556666655555543
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.4e-23 Score=215.62 Aligned_cols=217 Identities=25% Similarity=0.308 Sum_probs=137.0
Q ss_pred CCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCC
Q 047152 68 RDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSA 147 (776)
Q Consensus 68 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n 147 (776)
.++|.|.|+.|.- .+.++.+++++ ..+. .+|..+. +++++|++++|.+++. .+..|.++++|++|++++|
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~-----~~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n 71 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSS-----KKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDN 71 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTT-----SCCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSS
T ss_pred CccCCCCCCCCEe-CCCCCEEEccC-----CCCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCC
Confidence 4789999999853 23456778877 4444 2444443 5678888888888754 4456777888888888888
Q ss_pred CCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCC
Q 047152 148 EFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI 227 (776)
Q Consensus 148 ~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 227 (776)
+++...+..|.++++|++|++++|.+.. ..+..+.++++|++|++++|.++..+ +..++.+++|++|++++|.+++.
T Consensus 72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 72 KLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLP--PRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp CCSCCCTTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCC
T ss_pred ccCeeChhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeC--HHHhCcCcCCCEEECCCCcCCcc
Confidence 8775444556777777777777777754 33344555666666666666555532 23344455555555555544444
Q ss_pred CchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCch-
Q 047152 228 IPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK- 306 (776)
Q Consensus 228 ~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~- 306 (776)
.+. .+..+++ |+.|++++|++++..+..|..+++|++|++++|.++++|.
T Consensus 149 ~~~---------------------------~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 149 PKG---------------------------VFDKLTS--LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp CTT---------------------------TTTTCTT--CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CHh---------------------------HccCCcc--cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 333 3444444 5555555555555555566677777777777777777554
Q ss_pred hhcccCCCcEEeccCCcCCC
Q 047152 307 FLGNMCGLKILYLSGKELKG 326 (776)
Q Consensus 307 ~l~~l~~L~~L~Ls~n~l~~ 326 (776)
.+..+++|++|++++|.+..
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhccccCCCEEEecCCCeeC
Confidence 46667777777777777654
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=5e-23 Score=211.40 Aligned_cols=200 Identities=22% Similarity=0.191 Sum_probs=132.4
Q ss_pred eEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccc
Q 047152 502 GIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFG 581 (776)
Q Consensus 502 ~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 581 (776)
.++++++.++......+.++++|++++|++++..+..+..+++|++|++++|.++...+..|.++++|++|++++|++++
T Consensus 20 ~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~ 99 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99 (270)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC
T ss_pred EEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc
Confidence 44444444443222224566777777777766666666667777777777777765444555667777777777777765
Q ss_pred cCCccccccCCCcEEecCCCccccc----ccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccC
Q 047152 582 KIPNSMGFLHNIRSLSLYNRSQYEY----KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQ 657 (776)
Q Consensus 582 ~~p~~~~~l~~L~~L~l~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 657 (776)
..+..+..+++|++|+++++.+... +..+++|++|++++|++++..+..|+.+++|++|+|++|++++..+..+..
T Consensus 100 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 179 (270)
T 2o6q_A 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179 (270)
T ss_dssp CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc
Confidence 5555566666665555555433322 234555677788888887665666777888888888888887665666777
Q ss_pred cCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152 658 LKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 658 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
+++|++|++++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 88888888888888766666677778888888888888776653
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=4.8e-23 Score=212.37 Aligned_cols=162 Identities=23% Similarity=0.100 Sum_probs=117.9
Q ss_pred CcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccccc-CCccccccCCCcEEecC
Q 047152 521 ATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGK-IPNSMGFLHNIRSLSLY 599 (776)
Q Consensus 521 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~ 599 (776)
|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+. +|..+..+++|
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L------ 151 (276)
T 2z62_A 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL------ 151 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC------
T ss_pred CCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC------
Confidence 33444444444444444455566777777777777765555677777777777777777653 46666666665
Q ss_pred CCcccccccccccccEEEccCCCCccCCchhhhccccCC----EEECcCCcccCcCcccccCcCCCCeeeCcCceeeecC
Q 047152 600 NRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLV----ALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGI 675 (776)
Q Consensus 600 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 675 (776)
++|++++|++++..+..+..+++|+ .|++++|++++..+ ......+|++|++++|++++..
T Consensus 152 --------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 152 --------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp --------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCCC
T ss_pred --------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc-cccCCCcccEEECCCCceeecC
Confidence 6677888888877777777777777 89999999985444 4445568999999999999777
Q ss_pred CccCcCCCCCCeeeCCCCcceecCCCCC
Q 047152 676 PSSLSQLSGLSVMDLSYNNLSGKIPLGT 703 (776)
Q Consensus 676 p~~l~~l~~L~~L~ls~N~l~g~iP~~~ 703 (776)
+..+..+++|++|++++|+++|.+|.-.
T Consensus 217 ~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 217 DGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp TTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred HhHhcccccccEEEccCCcccccCCchH
Confidence 7778999999999999999999988643
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=4e-23 Score=213.96 Aligned_cols=195 Identities=24% Similarity=0.190 Sum_probs=122.7
Q ss_pred CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152 501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF 580 (776)
Q Consensus 501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (776)
+.++++++.++...+..+.+++.|++++|++++..+..+..+++|++|+|++|.+++..+. ..+++|++|++++|+++
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~ 90 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ 90 (290)
T ss_dssp CEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS
T ss_pred cEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC
Confidence 4444444444433233345677777777777766666677777777777777777643332 56677777777777776
Q ss_pred ccCCccccccCCCcEEecCCCccccc----ccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCccccc
Q 047152 581 GKIPNSMGFLHNIRSLSLYNRSQYEY----KSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIG 656 (776)
Q Consensus 581 ~~~p~~~~~l~~L~~L~l~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 656 (776)
.+|..+..+++|++|+++++.+... +..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+.
T Consensus 91 -~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 169 (290)
T 1p9a_G 91 -SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169 (290)
T ss_dssp -SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred -cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence 5566666666665555544433222 23344556677777777766566666777777777777777754444456
Q ss_pred CcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecC
Q 047152 657 QLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKI 699 (776)
Q Consensus 657 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 699 (776)
.+++|++|+|++|+++ .+|..+..+.+|+.+++++|++.|.+
T Consensus 170 ~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 6777777777777776 56666666667777777777776654
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.6e-23 Score=213.38 Aligned_cols=205 Identities=22% Similarity=0.208 Sum_probs=164.6
Q ss_pred CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEe
Q 047152 518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS 597 (776)
Q Consensus 518 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (776)
+.++++|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 45677777777777777666777777777777777777766666777777777778777777777777777777777777
Q ss_pred cCCCccccc----ccccccccEEEccCCCCccC-CchhhhccccCCEEECcCCcccCcCcccccCcCCCC----eeeCcC
Q 047152 598 LYNRSQYEY----KSTLGLVKILDLSSNKLGGG-VPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLD----FLDLSR 668 (776)
Q Consensus 598 l~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~ 668 (776)
++++.+... ...+++|++|++++|++++. +|..++++++|++|++++|++++..+..+..+++|+ +|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 777654433 34667889999999999874 699999999999999999999988788888888888 899999
Q ss_pred ceeeecCCccCcCCCCCCeeeCCCCcceecCCCC-CcccccccccccCCCCCCCCC
Q 047152 669 NQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 669 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~ 723 (776)
|++++..+..+.. .+|+.|++++|.+++..+.. ..+..+..+.+.+||+.|+|+
T Consensus 187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9999776666554 58999999999999655433 457788889999999999986
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=8.6e-23 Score=207.16 Aligned_cols=210 Identities=20% Similarity=0.202 Sum_probs=168.6
Q ss_pred CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152 501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF 580 (776)
Q Consensus 501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (776)
+.++++++.++...+...++++.|++++|++++..+..+..+++|++|+|++|.+++..+..|..+++|++|++++|+++
T Consensus 17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence 45566666665433334678999999999999999989999999999999999999888888999999999999999999
Q ss_pred ccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCC
Q 047152 581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKS 660 (776)
Q Consensus 581 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 660 (776)
+..+..|..+++| ++|+|++|++++..+..|..+++|++|+|++|++++..+..++.+++
T Consensus 97 ~~~~~~~~~l~~L--------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 97 SLPLGVFDHLTQL--------------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp CCCTTTTTTCTTC--------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccChhHhcccCCC--------------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 8777777777776 78999999999777777899999999999999999777778999999
Q ss_pred CCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCccccc------ccccccCCCCCCCCCCCCCCCCC
Q 047152 661 LDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQLQSF------NELVYAGNPELCGLPLRNKCPDE 731 (776)
Q Consensus 661 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~------~~~~~~gN~~lc~~~l~~~c~~~ 731 (776)
|++|+|++|++++..|..+..+++|++|++++|+++|..+....+..+ ......|+ .+|+.|....|..+
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 999999999999888889999999999999999999874432222111 11122344 46777766778765
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=5.1e-22 Score=205.62 Aligned_cols=205 Identities=23% Similarity=0.198 Sum_probs=169.4
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCC
Q 047152 107 ALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLS 186 (776)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 186 (776)
.+.+++++++++++++.++ .+|..+. +++++|+|++|++++..|..|.++++|++|++++|.+.. .+..+.++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLP 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE---EECCSCCT
T ss_pred cccccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc---ccCCCCCC
Confidence 4677889999999999998 4676664 689999999999988778889999999999999998863 23347888
Q ss_pred CCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCC
Q 047152 187 SLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSL 266 (776)
Q Consensus 187 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~ 266 (776)
+|++|++++|.++.+ +..+..+++|++|++++|++++..+..+..+ ++|++|++++|++++..+..+..+++
T Consensus 78 ~L~~L~Ls~N~l~~l---~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~-- 149 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGL---GELQELYLKGNELKTLPPGLLTPTPK-- 149 (290)
T ss_dssp TCCEEECCSSCCSSC---CCCTTTCTTCCEEECCSSCCCCCCSSTTTTC---TTCCEEECTTSCCCCCCTTTTTTCTT--
T ss_pred cCCEEECCCCcCCcC---chhhccCCCCCEEECCCCcCcccCHHHHcCC---CCCCEEECCCCCCCccChhhcccccC--
Confidence 999999999988864 4567888899999999999988887888887 88999999999888766666777777
Q ss_pred cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCC
Q 047152 267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKG 326 (776)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~ 326 (776)
|+.|++++|++++..+..|..+++|++|++++|+++.+|..+....+|+++++++|.+..
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 888888888888766667788888888888888888888888878888888888887753
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.3e-22 Score=208.34 Aligned_cols=225 Identities=22% Similarity=0.303 Sum_probs=126.3
Q ss_pred CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEcc
Q 047152 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD 194 (776)
Q Consensus 115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls 194 (776)
..+++..+.+.+. .....+++|++|++++|.++. ++ .++.+++|++|++++|.+.. ++.
T Consensus 22 ~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~---~~~------------- 80 (272)
T 3rfs_A 22 IKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD---ISA------------- 80 (272)
T ss_dssp HHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC---CGG-------------
T ss_pred HHHHhcCcccccc---cccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC---chh-------------
Confidence 3444444444321 233445556666666655542 22 34555555555555555432 223
Q ss_pred CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152 195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS 274 (776)
Q Consensus 195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~ 274 (776)
+.++++|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+..+++ |++|++++
T Consensus 81 -------------l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~ 142 (272)
T 3rfs_A 81 -------------LKELTNLTYLILTGNQLQSLPNGVFDKL---TNLKELVLVENQLQSLPDGVFDKLTN--LTYLNLAH 142 (272)
T ss_dssp -------------GTTCTTCCEEECTTSCCCCCCTTTTTTC---TTCCEEECTTSCCCCCCTTTTTTCTT--CCEEECCS
T ss_pred -------------hcCCCCCCEEECCCCccCccChhHhcCC---cCCCEEECCCCcCCccCHHHhccCCC--CCEEECCC
Confidence 4444455555555555544444444444 55555555555555444444455555 56666666
Q ss_pred CccccCcchhhcCCCCCCEEEccCCCCCCCc-hhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccc
Q 047152 275 NQLQGSIPEAFGRMVSLRYLDLSSNELRGIP-KFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNE 353 (776)
Q Consensus 275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~ 353 (776)
|++++..+..++.+++|++|++++|+++++| ..+..+++|++|++++|.+++..+..+..++ +|++|++++|.
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~l~~N~ 216 (272)
T 3rfs_A 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT------SLQYIWLHDNP 216 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT------TCCEEECCSSC
T ss_pred CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc------CCCEEEccCCC
Confidence 6665555555666667777777777666643 3356666666666666666666665556555 67777777776
Q ss_pred ccccCCCccCCCCCCEEeccCccccccchhcccCCCC
Q 047152 354 ITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFK 390 (776)
Q Consensus 354 l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 390 (776)
+.+. +++|+.++++.|.++|.+|.+++.+..
T Consensus 217 ~~~~------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 217 WDCT------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp BCCC------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cccc------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 6533 445667777777777777766665543
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.3e-23 Score=221.54 Aligned_cols=237 Identities=21% Similarity=0.222 Sum_probs=164.9
Q ss_pred CCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCC--CCCCEEeCCCCCCCCCCCCccccCCCCCCEEec
Q 047152 67 KRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKL--QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGL 144 (776)
Q Consensus 67 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l--~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L 144 (776)
+..|.+|.++.|+ ...++.+++++ +.+. +..+..+ +++++|++++|.+.+. .+ .+..+++|++|++
T Consensus 33 ~~vc~~W~~~~~~--~~~~~~l~l~~-----~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L~L 100 (336)
T 2ast_B 33 SGVCKRWYRLASD--ESLWQTLDLTG-----KNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHMDL 100 (336)
T ss_dssp TSSCHHHHHHHTC--STTSSEEECTT-----CBCC---HHHHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEEEC
T ss_pred HHHHHHHHHHhcC--chhheeecccc-----ccCC---HHHHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEEEc
Confidence 3457789998875 34577889987 3443 3456666 8899999999988864 44 3567899999999
Q ss_pred CCCCCCCC-CCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCC-CCCCcchhhHhhcCCCCCCEEEccCC
Q 047152 145 SSAEFAGP-IPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLN-DLSNFSNWVQLLSKLHSLTTLSLYSC 222 (776)
Q Consensus 145 s~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~L~~n 222 (776)
++|.+++. +|..+..+++|++|++++|.+.+ ..+..++++++|++|++++| .+++. .++..+.++++|++|++++|
T Consensus 101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCCEEECCCC
T ss_pred cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCCCCEEcCCCC
Confidence 99988765 77778888999999999888754 44556777888888888888 45542 24566777788888888888
Q ss_pred -CCCCC-CchhhhcCCCCC-CccEEEcCCC--CCC-CCchhhHhhcCCCCcCEEEccCCc-cccCcchhhcCCCCCCEEE
Q 047152 223 -DLPPI-IPSSLLNLNSSN-SLEVIDLTEN--NLT-NSVYPWLFNVSSSLVDRISLPSNQ-LQGSIPEAFGRMVSLRYLD 295 (776)
Q Consensus 223 -~l~~~-~~~~l~~l~~~~-~L~~L~Ls~n--~l~-~~~~~~l~~~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~ 295 (776)
.+++. ++..+..+ + +|++|++++| .++ +.++..+..+++ |+.|++++|. +++..+..+..+++|++|+
T Consensus 179 ~~l~~~~~~~~~~~l---~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~--L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 179 FDFTEKHVQVAVAHV---SETITQLNLSGYRKNLQKSDLSTLVRRCPN--LVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp TTCCHHHHHHHHHHS---CTTCCEEECCSCGGGSCHHHHHHHHHHCTT--CSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred CCcChHHHHHHHHhc---ccCCCEEEeCCCcccCCHHHHHHHHhhCCC--CCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 77654 45556666 6 7777777777 444 345555666666 7777777776 5555566666667777777
Q ss_pred ccCCC-CCC-CchhhcccCCCcEEeccCC
Q 047152 296 LSSNE-LRG-IPKFLGNMCGLKILYLSGK 322 (776)
Q Consensus 296 L~~n~-l~~-ip~~l~~l~~L~~L~Ls~n 322 (776)
+++|. +.. ....+.++++|++|++++|
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 77764 221 1124556666666666666
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=7.1e-23 Score=219.78 Aligned_cols=261 Identities=22% Similarity=0.225 Sum_probs=128.9
Q ss_pred EeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCC----ccCCCCC-CCCEEeccCCCCCCCCCchhhccC-----C
Q 047152 117 LDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIP----HQLGNLS-RLQFLDLSFNNLFSGENLDWLSHL-----S 186 (776)
Q Consensus 117 L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l-----~ 186 (776)
++++.|.+++. +|..+...++|++|+|++|.+++..+ ..+.+++ +|++|+|++|.+.. ..+..+..+ +
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCT
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCC
Confidence 45555555553 45555544456666666665554444 4444555 56666666555543 223333332 5
Q ss_pred CCcEEEccCCCCCCcc--hhhHhhcCC-CCCCEEEccCCCCCCCCchhhhc-CCC-CCCccEEEcCCCCCCCCchhhH--
Q 047152 187 SLIYLYLDLNDLSNFS--NWVQLLSKL-HSLTTLSLYSCDLPPIIPSSLLN-LNS-SNSLEVIDLTENNLTNSVYPWL-- 259 (776)
Q Consensus 187 ~L~~L~Ls~n~l~~~~--~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~-l~~-~~~L~~L~Ls~n~l~~~~~~~l-- 259 (776)
+|++|++++|.+++.. .+...+..+ ++|++|++++|.+++..+..+.. +.. .++|++|++++|.+++..+..+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 5555555555554421 122234444 56666666666665555444332 111 1456666666666654333322
Q ss_pred --hhcC-CCCcCEEEccCCccccCcchhh----cCC-CCCCEEEccCCCCCC-----Cchhhcc-cCCCcEEeccCCcCC
Q 047152 260 --FNVS-SSLVDRISLPSNQLQGSIPEAF----GRM-VSLRYLDLSSNELRG-----IPKFLGN-MCGLKILYLSGKELK 325 (776)
Q Consensus 260 --~~~~-~~~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~-----ip~~l~~-l~~L~~L~Ls~n~l~ 325 (776)
.... + |++|++++|++++..+..+ ..+ ++|++|+|++|.+++ ++..+.. .++|++|++++|.++
T Consensus 161 ~l~~~~~~--L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 161 ILAAIPAN--VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHTSCTT--CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHhcCCcc--ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 2222 3 5555555555554444322 233 355555555555554 3334433 235555555555555
Q ss_pred CccchHHhhccCCCcCCCccEEEcccccccccCCCccCCCCCCEEeccCccccc-------cchhcccCCCCCcEEECCC
Q 047152 326 GQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNG-------TIHKSIGQLFKLEMLKLNG 398 (776)
Q Consensus 326 ~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-------~~~~~l~~l~~L~~L~L~~ 398 (776)
+..+..+..+ +..+++|++|++++|.+.+ .++..+..+++|++|++++
T Consensus 239 ~~~~~~l~~~-------------------------~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 239 GPSLENLKLL-------------------------KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp CCCHHHHHHT-------------------------TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred cHHHHHHHHH-------------------------HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 4443333221 2344455555555555322 2233455666777777777
Q ss_pred cccccccc
Q 047152 399 NSLGGVIS 406 (776)
Q Consensus 399 N~l~~~~~ 406 (776)
|.+.+..+
T Consensus 294 N~l~~~~~ 301 (362)
T 3goz_A 294 KEIHPSHS 301 (362)
T ss_dssp CBCCGGGC
T ss_pred CcCCCcch
Confidence 77765543
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=9.2e-22 Score=202.12 Aligned_cols=182 Identities=24% Similarity=0.289 Sum_probs=116.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS 187 (776)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 187 (776)
+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++ + ..++.+++|++|++++|.+.. ..+..++++++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQS-LPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTT
T ss_pred cccccceeeeeeCCCCccc--cc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCc-cChhHhcCCcC
Confidence 5567888888888888873 33 47788888888888888875 3 467888888888888888764 34445677777
Q ss_pred CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152 188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV 267 (776)
Q Consensus 188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L 267 (776)
|++|++++|++++.+ +..++++++|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+..+++ |
T Consensus 111 L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~--L 183 (272)
T 3rfs_A 111 LKELVLVENQLQSLP--DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL---TNLTELDLSYNQLQSLPEGVFDKLTQ--L 183 (272)
T ss_dssp CCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTT--C
T ss_pred CCEEECCCCcCCccC--HHHhccCCCCCEEECCCCccCccCHHHhccC---ccCCEEECCCCCcCccCHHHhcCCcc--C
Confidence 777777777776642 2345666666666666666666555555555 56666666666555444443444444 4
Q ss_pred CEEEccCCccccCcchhhcCCCCCCEEEccCCCCC
Q 047152 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELR 302 (776)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 302 (776)
+.|++++|++++..+..+..+++|++|++++|.+.
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 55555555554444444444455555555544443
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2e-23 Score=226.43 Aligned_cols=248 Identities=21% Similarity=0.186 Sum_probs=142.8
Q ss_pred CCccccCCCCCCEEecCCCCCCCCCC----ccCCCCCCCCEEeccCCCCCCC--CCchhhccCCCCcEEEccCCCCCCcc
Q 047152 129 IPEFLGSLGKLSYLGLSSAEFAGPIP----HQLGNLSRLQFLDLSFNNLFSG--ENLDWLSHLSSLIYLYLDLNDLSNFS 202 (776)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~ 202 (776)
++..+..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+... ..+..+ .
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~-------------------~ 84 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL-------------------R 84 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH-------------------H
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHH-------------------H
Confidence 55667777788888888887775433 3366777777777777654311 111111 0
Q ss_pred hhhHhhcCCCCCCEEEccCCCCCC----CCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhh----c---------CCC
Q 047152 203 NWVQLLSKLHSLTTLSLYSCDLPP----IIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFN----V---------SSS 265 (776)
Q Consensus 203 ~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~----~---------~~~ 265 (776)
.+...+..+++|++|+|++|.+.+ .++..+..+ ++|++|++++|.+++..+..+.. + ++
T Consensus 85 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~---~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~- 160 (386)
T 2ca6_A 85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH---TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP- 160 (386)
T ss_dssp HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHC---TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhC---CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC-
Confidence 112223445555555555555544 233444444 55555555555554332222222 2 44
Q ss_pred CcCEEEccCCccc-cCcc---hhhcCCCCCCEEEccCCCCCC------CchhhcccCCCcEEeccCCcCC----CccchH
Q 047152 266 LVDRISLPSNQLQ-GSIP---EAFGRMVSLRYLDLSSNELRG------IPKFLGNMCGLKILYLSGKELK----GQLSEF 331 (776)
Q Consensus 266 ~L~~L~L~~n~l~-~~~p---~~l~~l~~L~~L~L~~n~l~~------ip~~l~~l~~L~~L~Ls~n~l~----~~~~~~ 331 (776)
|++|++++|+++ +.++ ..+..+++|++|++++|.++. +|..+..+++|++|++++|.++ ..++..
T Consensus 161 -L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 161 -LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp -CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred -CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 666666666665 3333 345566677777777776662 2225666667777777777665 444555
Q ss_pred HhhccCCCcCCCccEEEccccccccc----CCC-c--cCCCCCCEEeccCccccc----cchhcc-cCCCCCcEEECCCc
Q 047152 332 IQDLSSGCTKNSLEWLHLSSNEITGS----MPN-L--GEFSSLKQLNLENNLLNG----TIHKSI-GQLFKLEMLKLNGN 399 (776)
Q Consensus 332 ~~~l~~~~~~~~L~~L~L~~n~l~~~----~~~-l--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~L~~N 399 (776)
+..++ +|++|+|++|.+++. ++. + +.+++|++|++++|.+++ .+|..+ .++++|++|++++|
T Consensus 240 l~~~~------~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 240 LKSWP------NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp GGGCT------TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HccCC------CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 55555 677777777766643 122 3 336777777777777776 366666 45677778888887
Q ss_pred ccccccc
Q 047152 400 SLGGVIS 406 (776)
Q Consensus 400 ~l~~~~~ 406 (776)
.+++..+
T Consensus 314 ~l~~~~~ 320 (386)
T 2ca6_A 314 RFSEEDD 320 (386)
T ss_dssp BSCTTSH
T ss_pred cCCcchh
Confidence 7776553
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=3e-22 Score=214.88 Aligned_cols=262 Identities=21% Similarity=0.225 Sum_probs=160.5
Q ss_pred EEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCc----hhhccCC-CCcEEEccCCCCCCcc--hhhHhhcCC-C
Q 047152 141 YLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENL----DWLSHLS-SLIYLYLDLNDLSNFS--NWVQLLSKL-H 212 (776)
Q Consensus 141 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~----~~l~~l~-~L~~L~Ls~n~l~~~~--~~~~~l~~l-~ 212 (776)
+++++.|.++|.+|..+...++|++|+|++|.+.. ..+ ..+.+++ +|++|++++|.+++.. .+...+... +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 46788888888888777777778888888888764 333 4455565 6666666666665531 111222222 5
Q ss_pred CCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhc-CCCCcCEEEccCCccccCcchhh----cC
Q 047152 213 SLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNV-SSSLVDRISLPSNQLQGSIPEAF----GR 287 (776)
Q Consensus 213 ~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-~~~~L~~L~L~~n~l~~~~p~~l----~~ 287 (776)
+|++|++++|.+++..+..+... +... ++ |++|++++|++++..+..+ ..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~-----------------------l~~~~~~--L~~L~Ls~N~l~~~~~~~l~~~l~~ 135 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKT-----------------------LAAIPFT--ITVLDLGWNDFSSKSSSEFKQAFSN 135 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHH-----------------------HHTSCTT--CCEEECCSSCGGGSCHHHHHHHHTT
T ss_pred CccEEECcCCcCChHHHHHHHHH-----------------------HHhCCCC--ccEEECcCCcCCcHHHHHHHHHHHh
Confidence 55555555555554444333221 1111 33 5555555555554443332 23
Q ss_pred -CCCCCEEEccCCCCCC-----CchhhcccC-CCcEEeccCCcCCCccchHHhhccCCCcC-CCccEEEcccccccccCC
Q 047152 288 -MVSLRYLDLSSNELRG-----IPKFLGNMC-GLKILYLSGKELKGQLSEFIQDLSSGCTK-NSLEWLHLSSNEITGSMP 359 (776)
Q Consensus 288 -l~~L~~L~L~~n~l~~-----ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~-~~L~~L~L~~n~l~~~~~ 359 (776)
.++|++|++++|.+++ ++..+..++ +|++|++++|.+++..+..+...-. .. .+|++|+|++|.+++...
T Consensus 136 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~i~~~~~ 213 (362)
T 3goz_A 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA--SIPASVTSLDLSANLLGLKSY 213 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH--TSCTTCCEEECTTSCGGGSCH
T ss_pred CCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHH--hCCCCCCEEECCCCCCChhHH
Confidence 2466777777776663 334445554 7777777777777666655544300 00 168888888887775221
Q ss_pred -----CccC-CCCCCEEeccCccccccch----hcccCCCCCcEEECCCccccccccH------HhhhCCCCCcEEECCC
Q 047152 360 -----NLGE-FSSLKQLNLENNLLNGTIH----KSIGQLFKLEMLKLNGNSLGGVISE------ALFSNLSRLAALDLAD 423 (776)
Q Consensus 360 -----~l~~-l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~N~l~~~~~~------~~~~~l~~L~~L~Ls~ 423 (776)
.+.. .++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+. ..+..+++|+.||+++
T Consensus 214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 1333 4589999999999887544 3457789999999999996543322 1356788899999999
Q ss_pred Cccceec
Q 047152 424 NSLTLEF 430 (776)
Q Consensus 424 n~l~~~~ 430 (776)
|++....
T Consensus 294 N~l~~~~ 300 (362)
T 3goz_A 294 KEIHPSH 300 (362)
T ss_dssp CBCCGGG
T ss_pred CcCCCcc
Confidence 9987653
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=4.5e-22 Score=211.53 Aligned_cols=199 Identities=25% Similarity=0.258 Sum_probs=121.7
Q ss_pred CCCCEEeCCCCCCCCCCCCccccCC--CCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCc
Q 047152 112 QHLTYLDLSRNNFSGSSIPEFLGSL--GKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI 189 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 189 (776)
..++.++++++.+. |..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+.....+..+.++++|+
T Consensus 47 ~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34788999988775 4556666 8899999999998876655 557888888888888765312444566777777
Q ss_pred EEEccCCCCCCcchhhHhhcCCCCCCEEEccCC-CCCCC-CchhhhcCCCCCCccEEEcCCC-CCCCC-chhhHhhcC-C
Q 047152 190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSC-DLPPI-IPSSLLNLNSSNSLEVIDLTEN-NLTNS-VYPWLFNVS-S 264 (776)
Q Consensus 190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~~~~L~~L~Ls~n-~l~~~-~~~~l~~~~-~ 264 (776)
+|++++|.+++ ..+..++++++|++|++++| .+++. ++..+..+ ++|++|++++| .+++. ++..+..++ +
T Consensus 122 ~L~L~~~~l~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 122 NLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC---SRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp EEECTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC---TTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred EEeCcCcccCH--HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC---CCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 77777776654 34556666677777777766 45442 44445555 66666666666 55543 344455555 5
Q ss_pred CCcCEEEccCC--ccc-cCcchhhcCCCCCCEEEccCCC-CCC-CchhhcccCCCcEEeccCC
Q 047152 265 SLVDRISLPSN--QLQ-GSIPEAFGRMVSLRYLDLSSNE-LRG-IPKFLGNMCGLKILYLSGK 322 (776)
Q Consensus 265 ~~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~-ip~~l~~l~~L~~L~Ls~n 322 (776)
|++|++++| .++ +.++..+..+++|++|++++|. +++ .+..+..+++|++|++++|
T Consensus 197 --L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 197 --ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp --CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred --CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 555555555 233 2334444455555555555554 333 3344444455555555444
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.7e-22 Score=217.50 Aligned_cols=238 Identities=18% Similarity=0.231 Sum_probs=155.5
Q ss_pred hhhccCCCCcEEEccCCCCCCc--chhhHhhcCCCCCCEEEccCCC---CCCCCchhh-------hcCCCCCCccEEEcC
Q 047152 180 DWLSHLSSLIYLYLDLNDLSNF--SNWVQLLSKLHSLTTLSLYSCD---LPPIIPSSL-------LNLNSSNSLEVIDLT 247 (776)
Q Consensus 180 ~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~l-------~~l~~~~~L~~L~Ls 247 (776)
..+..+++|++|++++|.+... ..++..+..+++|++|+|++|. +.+.+|..+ ..+ ++|++|+++
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~---~~L~~L~Ls 102 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC---PKLHTVRLS 102 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC---TTCCEEECC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC---CcccEEECC
Confidence 3455566666666666666543 1133446677788888887754 344455444 445 888999999
Q ss_pred CCCCCC----CchhhHhhcCCCCcCEEEccCCccccCcchhhc----CC---------CCCCEEEccCCCCCC--Cc---
Q 047152 248 ENNLTN----SVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFG----RM---------VSLRYLDLSSNELRG--IP--- 305 (776)
Q Consensus 248 ~n~l~~----~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~l~~--ip--- 305 (776)
+|.+++ .++..+..+++ |++|++++|.+++..+..+. .+ ++|++|++++|+++. +|
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~--L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTP--LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTT--CCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCC--CCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 998887 46667777777 88888888888654433333 33 788888888888863 44
Q ss_pred hhhcccCCCcEEeccCCcCCCc-----cchHHhhccCCCcCCCccEEEccccccc----ccCCC-ccCCCCCCEEeccCc
Q 047152 306 KFLGNMCGLKILYLSGKELKGQ-----LSEFIQDLSSGCTKNSLEWLHLSSNEIT----GSMPN-LGEFSSLKQLNLENN 375 (776)
Q Consensus 306 ~~l~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~~~~~~~L~~L~L~~n~l~----~~~~~-l~~l~~L~~L~Ls~n 375 (776)
..+..+++|++|++++|.++.. .+..+..++ +|++|+|++|.++ +.+|. +..+++|++|++++|
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~------~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ------ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT------TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC------CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 4566777888888888877632 222444555 6777777777774 33333 666777777777777
Q ss_pred ccccc----chhccc--CCCCCcEEECCCccccc----cccHHhhhCCCCCcEEECCCCccce
Q 047152 376 LLNGT----IHKSIG--QLFKLEMLKLNGNSLGG----VISEALFSNLSRLAALDLADNSLTL 428 (776)
Q Consensus 376 ~l~~~----~~~~l~--~l~~L~~L~L~~N~l~~----~~~~~~~~~l~~L~~L~Ls~n~l~~ 428 (776)
.+++. ++..+. .+++|++|++++|.+++ .+|...+.++++|++|++++|++++
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 77654 445553 36777777777777765 3555333556777777777776653
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=8.7e-21 Score=198.40 Aligned_cols=195 Identities=22% Similarity=0.280 Sum_probs=122.6
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS 187 (776)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 187 (776)
+.++++|++|++++|.+.. +| .+..+++|++|++++|++++. +. +..+++|++|++++|.+.. .+.+.++++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~---~~~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN---VSAIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC---CGGGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC---chhhcCCCC
Confidence 3456777888888887763 44 467778888888888877743 33 7777778888887777643 345666777
Q ss_pred CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152 188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV 267 (776)
Q Consensus 188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L 267 (776)
|++|++++|.+++.+ .+..+++|++|++++|.+++..+ +..+ ++|++|++++|+++
T Consensus 109 L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~l---~~L~~L~l~~n~l~--------------- 164 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGL---TNLQYLSIGNAQVS--------------- 164 (308)
T ss_dssp CCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGC---TTCCEEECCSSCCC---------------
T ss_pred CCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccCC---CCccEEEccCCcCC---------------
Confidence 777777777766642 25566666666666666555433 3344 45555555555444
Q ss_pred CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEE
Q 047152 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWL 347 (776)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L 347 (776)
+..+ +..+++|++|++++|.+++++. +..+++|++|++++|.+++..+ +..++ +|++|
T Consensus 165 -----------~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~------~L~~L 222 (308)
T 1h6u_A 165 -----------DLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTS------NLFIV 222 (308)
T ss_dssp -----------CCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCT------TCCEE
T ss_pred -----------CChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCC------CCCEE
Confidence 3222 5556666666666666666544 5666666666666666665543 44454 67777
Q ss_pred Ecccccccc
Q 047152 348 HLSSNEITG 356 (776)
Q Consensus 348 ~L~~n~l~~ 356 (776)
++++|.+++
T Consensus 223 ~l~~N~i~~ 231 (308)
T 1h6u_A 223 TLTNQTITN 231 (308)
T ss_dssp EEEEEEEEC
T ss_pred EccCCeeec
Confidence 777777764
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=9.7e-22 Score=206.14 Aligned_cols=229 Identities=18% Similarity=0.160 Sum_probs=180.7
Q ss_pred CCCCCCEEeCCCCCCCCCCCCc--cccCCCCCCEEecCCCCCCCCCCccC--CCCCCCCEEeccCCCCCCCCC---chhh
Q 047152 110 KLQHLTYLDLSRNNFSGSSIPE--FLGSLGKLSYLGLSSAEFAGPIPHQL--GNLSRLQFLDLSFNNLFSGEN---LDWL 182 (776)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~~~~~~~---~~~l 182 (776)
+...++.+.+.++.++...+.. .+..+++|++|++++|.+.+..|..+ +.+++|++|++++|.+..... ...+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3445788999888775321111 12235679999999999999999888 899999999999999875222 1345
Q ss_pred ccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCC--Cc--hhhhcCCCCCCccEEEcCCCCCCCCchh-
Q 047152 183 SHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPI--IP--SSLLNLNSSNSLEVIDLTENNLTNSVYP- 257 (776)
Q Consensus 183 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~--~~l~~l~~~~~L~~L~Ls~n~l~~~~~~- 257 (776)
..+++|++|++++|.+.+.+ +..++++++|++|++++|++.+. .+ ..+..+ ++|++|++++|+++. ++.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l---~~L~~L~Ls~N~l~~-l~~~ 215 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFS--CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF---PAIQNLALRNTGMET-PTGV 215 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCC--TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS---CCCCSCBCCSSCCCC-HHHH
T ss_pred hhccCCCEEEeeCCCcchhh--HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC---CCCCEEECCCCCCCc-hHHH
Confidence 67999999999999998753 46788999999999999998653 11 222455 899999999999973 333
Q ss_pred ---hHhhcCCCCcCEEEccCCccccCcchhhcCC---CCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchH
Q 047152 258 ---WLFNVSSSLVDRISLPSNQLQGSIPEAFGRM---VSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEF 331 (776)
Q Consensus 258 ---~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~ 331 (776)
.+..+++ |++|++++|++++..|..+..+ ++|++|++++|+++.+|..+. ++|++|++++|.+++.. .
T Consensus 216 ~~~l~~~l~~--L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~-~- 289 (310)
T 4glp_A 216 CAALAAAGVQ--PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAP-Q- 289 (310)
T ss_dssp HHHHHHHTCC--CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCC-C-
T ss_pred HHHHHhcCCC--CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCc-h-
Confidence 2467788 9999999999999888888776 699999999999999998775 79999999999999752 2
Q ss_pred HhhccCCCcCCCccEEEcccccccc
Q 047152 332 IQDLSSGCTKNSLEWLHLSSNEITG 356 (776)
Q Consensus 332 ~~~l~~~~~~~~L~~L~L~~n~l~~ 356 (776)
+..++ +|++|++++|.++.
T Consensus 290 ~~~l~------~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 PDELP------EVDNLTLDGNPFLV 308 (310)
T ss_dssp TTSCC------CCSCEECSSTTTSC
T ss_pred hhhCC------CccEEECcCCCCCC
Confidence 45555 89999999999874
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=204.03 Aligned_cols=227 Identities=20% Similarity=0.215 Sum_probs=182.2
Q ss_pred cEEEEECCCCCCCCCCCcee-cc--ccccCCCCCCEEeCCCCCCCCCCCCccc--cCCCCCCEEecCCCCCCCCCC----
Q 047152 84 HVNKLDLQPIGFDSFPLRGK-IT--PALLKLQHLTYLDLSRNNFSGSSIPEFL--GSLGKLSYLGLSSAEFAGPIP---- 154 (776)
Q Consensus 84 ~v~~L~L~~~~~~~~~l~g~-~~--~~l~~l~~L~~L~Ls~n~l~~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p---- 154 (776)
+++.+.+.+. .+... +. ..+..+++|++|++++|.+.+. .|..+ ..+++|++|++++|++++..+
T Consensus 65 ~l~~l~l~~~-----~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 65 RVRRLTVGAA-----QVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp CCCEEEECSC-----CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred ceeEEEEeCC-----cCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhhhhHH
Confidence 5777888773 33321 11 1233457799999999999986 77777 899999999999999998666
Q ss_pred ccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhh--HhhcCCCCCCEEEccCCCCCCCCc--h
Q 047152 155 HQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWV--QLLSKLHSLTTLSLYSCDLPPIIP--S 230 (776)
Q Consensus 155 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~--~ 230 (776)
..+..+++|++|++++|.+.. ..+..++++++|++|++++|++.+...++ ..++++++|++|++++|+++...+ .
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence 455689999999999999965 55678899999999999999987632232 224789999999999999974322 1
Q ss_pred -hhhcCCCCCCccEEEcCCCCCCCCchhhHhhc---CCCCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCch
Q 047152 231 -SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNV---SSSLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK 306 (776)
Q Consensus 231 -~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~---~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~ 306 (776)
.+..+ ++|++|++++|++++..|+.+..+ ++ |++|++++|+++ .+|..+. ++|++|++++|+++++|.
T Consensus 218 ~l~~~l---~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~--L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 218 ALAAAG---VQPHSLDLSHNSLRATVNPSAPRCMWSSA--LNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp HHHHHT---CCCSSEECTTSCCCCCCCSCCSSCCCCTT--CCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred HHHhcC---CCCCEEECCCCCCCccchhhHHhccCcCc--CCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch
Confidence 34667 899999999999999888777776 46 999999999999 5677664 799999999999999876
Q ss_pred hhcccCCCcEEeccCCcCCC
Q 047152 307 FLGNMCGLKILYLSGKELKG 326 (776)
Q Consensus 307 ~l~~l~~L~~L~Ls~n~l~~ 326 (776)
+..+++|++|++++|.++.
T Consensus 290 -~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 -PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -TTSCCCCSCEECSSTTTSC
T ss_pred -hhhCCCccEEECcCCCCCC
Confidence 6888999999999999875
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=6.8e-21 Score=191.67 Aligned_cols=198 Identities=18% Similarity=0.229 Sum_probs=143.1
Q ss_pred CCCCCcEEEccCCccccCCCccccCCCCccEEECcCCc-ccccCChhhhCCCCCcEEeccC-CcccccCCccccccCCCc
Q 047152 517 LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNL-LSGKLPDCWFQFDSLVILNLAN-NNFFGKIPNSMGFLHNIR 594 (776)
Q Consensus 517 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~ 594 (776)
...++++|++++|++++..+..+..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 33456666666666666666566666666666666665 5544445566666666666666 666655555666666666
Q ss_pred EEecCCCcccccc--ccccccc---EEEccCC-CCccCCchhhhccccCC-EEECcCCcccCcCcccccCcCCCCeeeCc
Q 047152 595 SLSLYNRSQYEYK--STLGLVK---ILDLSSN-KLGGGVPKEIMDLVGLV-ALNLSRNNLTGQITPKIGQLKSLDFLDLS 667 (776)
Q Consensus 595 ~L~l~~~~~~~~~--~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 667 (776)
+|+++++.+..+. ..+++|+ +|++++| ++++..+..|.++++|+ +|++++|+++ .+|......++|++|+++
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 6666665433322 3445555 9999999 99977777899999999 9999999999 666655555899999999
Q ss_pred Cce-eeecCCccCcCC-CCCCeeeCCCCcceecCCCCCcccccccccccCCC
Q 047152 668 RNQ-FFGGIPSSLSQL-SGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNP 717 (776)
Q Consensus 668 ~N~-l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 717 (776)
+|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+..+..+.+.++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCcc
Confidence 995 997778889999 999999999999984 5654 67777777776654
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=4.8e-21 Score=192.82 Aligned_cols=197 Identities=23% Similarity=0.258 Sum_probs=153.2
Q ss_pred CCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCC-CCCCCCccCCCCCCCCEEeccC-CCCCCCCCchhhccCCCCc
Q 047152 112 QHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAE-FAGPIPHQLGNLSRLQFLDLSF-NNLFSGENLDWLSHLSSLI 189 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~ 189 (776)
++|++|++++|.+++. .+..+..+++|++|++++|+ +++..+..|.++++|++|++++ |++.. ..+..|.++++|+
T Consensus 31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCTTCC
T ss_pred CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCCCCC
Confidence 3899999999999864 45578899999999999997 8765566889999999999998 88864 4455788899999
Q ss_pred EEEccCCCCCCcchhhHhhcCCCCCC---EEEccCC-CCCCCCchhhhcCCCCCCcc-EEEcCCCCCCCCchhhHhhcCC
Q 047152 190 YLYLDLNDLSNFSNWVQLLSKLHSLT---TLSLYSC-DLPPIIPSSLLNLNSSNSLE-VIDLTENNLTNSVYPWLFNVSS 264 (776)
Q Consensus 190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~~~~L~-~L~Ls~n~l~~~~~~~l~~~~~ 264 (776)
+|++++|.+++++. +..+++|+ +|++++| .+++..+..+..+ ++|+ +|++++|+++ .+|......++
T Consensus 109 ~L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l---~~L~~~L~l~~n~l~-~i~~~~~~~~~ 180 (239)
T 2xwt_C 109 FLGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL---CNETLTLKLYNNGFT-SVQGYAFNGTK 180 (239)
T ss_dssp EEEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT---BSSEEEEECCSCCCC-EECTTTTTTCE
T ss_pred EEeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcccccch---hcceeEEEcCCCCCc-ccCHhhcCCCC
Confidence 99999999888542 67777777 8889888 8877777777777 8888 8888888887 55554444455
Q ss_pred CCcCEEEccCCc-cccCcchhhcCC-CCCCEEEccCCCCCCCchhhcccCCCcEEeccCC
Q 047152 265 SLVDRISLPSNQ-LQGSIPEAFGRM-VSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGK 322 (776)
Q Consensus 265 ~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n 322 (776)
|+.|++++|+ +++..+..|..+ ++|++|++++|+++++|.. .+++|+.|+++++
T Consensus 181 --L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 181 --LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp --EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred --CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 8888888884 776666677777 7888888888888777654 5667777776654
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=3.7e-20 Score=187.72 Aligned_cols=179 Identities=21% Similarity=0.180 Sum_probs=158.0
Q ss_pred CCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecC
Q 047152 520 NATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLY 599 (776)
Q Consensus 520 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 599 (776)
+.++++++++.++....... ++++.|+|++|.+++..+..|.++++|++|++++|++++..|..+..+++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------ 85 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL------ 85 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------
T ss_pred CCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC------
Confidence 56789999999986554332 689999999999998888899999999999999999998888878777777
Q ss_pred CCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccC
Q 047152 600 NRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSL 679 (776)
Q Consensus 600 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 679 (776)
++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|++++..|..+
T Consensus 86 --------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 151 (251)
T 3m19_A 86 --------------GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151 (251)
T ss_dssp --------------CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred --------------CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc
Confidence 789999999998888889999999999999999997777778999999999999999998877789
Q ss_pred cCCCCCCeeeCCCCcceecCCCC-CcccccccccccCCCCCCC
Q 047152 680 SQLSGLSVMDLSYNNLSGKIPLG-TQLQSFNELVYAGNPELCG 721 (776)
Q Consensus 680 ~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~ 721 (776)
..+++|++|++++|++++..|.. ..+..+..+.+.+|++-|.
T Consensus 152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999999999766633 4567888899999999997
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=7.1e-20 Score=191.46 Aligned_cols=207 Identities=23% Similarity=0.315 Sum_probs=145.7
Q ss_pred eCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCC
Q 047152 118 DLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLND 197 (776)
Q Consensus 118 ~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~ 197 (776)
.+..+.+.+. .....+++|++|++++|.++. +| .+..+++|++|++++|.+.. .+. +.++++|++|++++|.
T Consensus 25 ~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 25 AAGKSNVTDT---VTQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNP 96 (308)
T ss_dssp HTTCSSTTSE---ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCC
T ss_pred HhCCCCcCce---ecHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCc
Confidence 4444544431 123456777788887777763 44 46677777777777777653 222 6666666666666666
Q ss_pred CCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCcc
Q 047152 198 LSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQL 277 (776)
Q Consensus 198 l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l 277 (776)
+++.+ .+..+++|++|++++|.+++.. .+..+++ |+.|++++|++
T Consensus 97 l~~~~----~~~~l~~L~~L~l~~n~l~~~~-----------------------------~l~~l~~--L~~L~l~~n~l 141 (308)
T 1h6u_A 97 LKNVS----AIAGLQSIKTLDLTSTQITDVT-----------------------------PLAGLSN--LQVLYLDLNQI 141 (308)
T ss_dssp CSCCG----GGTTCTTCCEEECTTSCCCCCG-----------------------------GGTTCTT--CCEEECCSSCC
T ss_pred CCCch----hhcCCCCCCEEECCCCCCCCch-----------------------------hhcCCCC--CCEEECCCCcc
Confidence 65531 3445555555555555544421 1444444 66666666666
Q ss_pred ccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEccccccccc
Q 047152 278 QGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGS 357 (776)
Q Consensus 278 ~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~ 357 (776)
++..+ +..+++|++|++++|.+++++. +..+++|++|++++|.+++..+ +..++ +|++|++++|++++.
T Consensus 142 ~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~------~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 142 TNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLP------NLIEVHLKNNQISDV 210 (308)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCT------TCCEEECTTSCCCBC
T ss_pred CcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCC------CCCEEEccCCccCcc
Confidence 55433 7889999999999999999877 8999999999999999998765 66777 999999999999976
Q ss_pred CCCccCCCCCCEEeccCccccc
Q 047152 358 MPNLGEFSSLKQLNLENNLLNG 379 (776)
Q Consensus 358 ~~~l~~l~~L~~L~Ls~n~l~~ 379 (776)
.+ +..+++|+.|++++|.+++
T Consensus 211 ~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 211 SP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG-GTTCTTCCEEEEEEEEEEC
T ss_pred cc-ccCCCCCCEEEccCCeeec
Confidence 64 8999999999999999985
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=4e-20 Score=183.05 Aligned_cols=158 Identities=22% Similarity=0.189 Sum_probs=130.2
Q ss_pred cEEEccCCccccCCCccccCCCCccEEECcCCcccccCC-hhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCC
Q 047152 522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLP-DCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYN 600 (776)
Q Consensus 522 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 600 (776)
+.+++++|.++.. |..+ .+.+++|+|++|++++..+ ..|..+++|++|++++|++++..+..|..+++|
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------- 83 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------- 83 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-------
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-------
Confidence 3555666665543 2222 2346788888888886644 457788888999999888887777777777766
Q ss_pred CcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCc
Q 047152 601 RSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLS 680 (776)
Q Consensus 601 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 680 (776)
++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..|.
T Consensus 84 -------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 84 -------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp -------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred -------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence 6788999999988888899999999999999999988899999999999999999999999899999
Q ss_pred CCCCCCeeeCCCCcceecCCCC
Q 047152 681 QLSGLSVMDLSYNNLSGKIPLG 702 (776)
Q Consensus 681 ~l~~L~~L~ls~N~l~g~iP~~ 702 (776)
.+++|++|++++|+++|.++..
T Consensus 151 ~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 151 TLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp TCTTCCEEECCSCCEECSGGGH
T ss_pred CCCCCCEEEecCcCCcCCCchH
Confidence 9999999999999999987743
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=6.3e-20 Score=180.30 Aligned_cols=175 Identities=22% Similarity=0.198 Sum_probs=145.5
Q ss_pred CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152 501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF 580 (776)
Q Consensus 501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (776)
+.++++++.++......++++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 45666666666544445678999999999999888888888999999999999999776677889999999999999998
Q ss_pred ccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCC
Q 047152 581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKS 660 (776)
Q Consensus 581 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 660 (776)
+..+..+..+++| ++|++++|++++..+..+..+++|++|++++|++++..+..+..+++
T Consensus 90 ~~~~~~~~~l~~L--------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 90 SLPNGVFDKLTQL--------------------KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp CCCTTTTTTCTTC--------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ccCHhHhcCccCC--------------------CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 7666666766666 77899999999777777899999999999999999766666889999
Q ss_pred CCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC
Q 047152 661 LDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG 702 (776)
Q Consensus 661 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 702 (776)
|++|++++|.+.+. ++.|+.|+++.|.++|.+|..
T Consensus 150 L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 150 LQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCT
T ss_pred ccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeecc
Confidence 99999999987653 457899999999999999953
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=7.9e-20 Score=204.98 Aligned_cols=211 Identities=21% Similarity=0.320 Sum_probs=146.7
Q ss_pred CCCCCCCCCCCCCC-----Cccce-eeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCc
Q 047152 58 LSSWRREDEKRDCC-----KWTGV-GCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPE 131 (776)
Q Consensus 58 ~~~W~~~~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~ 131 (776)
+.+|. .+.++| .|.|+ .|. .++++.|++++ +.+.+ +|..+ +++|++|+|++|.++ .+|
T Consensus 33 l~~W~---~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~-----n~L~~-lp~~l--~~~L~~L~Ls~N~l~--~ip- 96 (571)
T 3cvr_A 33 WDKWE---KQALPGENRNEAVSLLKECL--INQFSELQLNR-----LNLSS-LPDNL--PPQITVLEITQNALI--SLP- 96 (571)
T ss_dssp HHHHH---TTCCTTCCHHHHHHHHHHHH--HTTCSEEECCS-----SCCSC-CCSCC--CTTCSEEECCSSCCS--CCC-
T ss_pred HHHHh---ccCCccccccchhhhccccc--cCCccEEEeCC-----CCCCc-cCHhH--cCCCCEEECcCCCCc--ccc-
Confidence 34565 244556 69999 675 35788999998 56665 66655 378999999999988 367
Q ss_pred cccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCC
Q 047152 132 FLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKL 211 (776)
Q Consensus 132 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 211 (776)
..+++|++|++++|++++ +|. +.. +|++|++++|++.. .+. .+++|++|++++|.+++++. .+
T Consensus 97 --~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp~------~l 159 (571)
T 3cvr_A 97 --ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTMLPE------LP 159 (571)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC------CC
T ss_pred --cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCcCCC------cC
Confidence 457889999999999886 776 655 88888888888764 222 56677777777777666432 34
Q ss_pred CCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcC----
Q 047152 212 HSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGR---- 287 (776)
Q Consensus 212 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~---- 287 (776)
++|++|++++|.+++ +|. +. ++ |+.|++++|+++ .+|. +..
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~-l~-----~~--------------------------L~~L~Ls~N~L~-~lp~-~~~~L~~ 204 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE-LP-----ES--------------------------LEALDVSTNLLE-SLPA-VPVRNHH 204 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC-----TT--------------------------CCEEECCSSCCS-SCCC-CC-----
T ss_pred CCcCEEECCCCCCCC-cch-hh-----CC--------------------------CCEEECcCCCCC-chhh-HHHhhhc
Confidence 555555555555544 222 21 33 555555555555 3343 332
Q ss_pred -CCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhcc
Q 047152 288 -MVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLS 336 (776)
Q Consensus 288 -l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 336 (776)
.+.|+.|+|++|.++.+|..+..+++|++|++++|.+++.+|..+..+.
T Consensus 205 ~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp ---CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred ccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 2233999999999999999888899999999999999999999888765
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.1e-19 Score=179.82 Aligned_cols=155 Identities=18% Similarity=0.202 Sum_probs=122.9
Q ss_pred EEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCc
Q 047152 523 SLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRS 602 (776)
Q Consensus 523 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~ 602 (776)
.++++++.++..+.. + .++++.|++++|++++..+..|..+++|++|+|++|++++..|..|..+++|
T Consensus 15 ~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L--------- 82 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL--------- 82 (220)
T ss_dssp EEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC---------
T ss_pred EEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC---------
Confidence 455555555543222 2 1567778888888876666677788888888888888887777777777666
Q ss_pred ccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCC
Q 047152 603 QYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQL 682 (776)
Q Consensus 603 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 682 (776)
++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+
T Consensus 83 -----------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 151 (220)
T 2v9t_B 83 -----------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151 (220)
T ss_dssp -----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -----------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence 677888888886656667889999999999999998888899999999999999999998888889999
Q ss_pred CCCCeeeCCCCcceecCC
Q 047152 683 SGLSVMDLSYNNLSGKIP 700 (776)
Q Consensus 683 ~~L~~L~ls~N~l~g~iP 700 (776)
++|++|++++|++.|.++
T Consensus 152 ~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 152 RAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTCCEEECCSSCEECSGG
T ss_pred CCCCEEEeCCCCcCCCCc
Confidence 999999999999998755
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.2e-19 Score=201.44 Aligned_cols=182 Identities=26% Similarity=0.331 Sum_probs=130.3
Q ss_pred cccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCC
Q 047152 474 QRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNN 553 (776)
Q Consensus 474 ~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N 553 (776)
+++.|++++|.+++ +|. .+ ...++.|++++|+++ .+|..+++|++|++++|+|++ +|. +.. +|++|+|++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 68888888888876 555 22 133467777777776 455556677777777777766 333 332 6777777777
Q ss_pred cccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhc
Q 047152 554 LLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMD 633 (776)
Q Consensus 554 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 633 (776)
++++ +|. .+++|+.|++++|.+++ +|. .+++|++|+|++|++++ +|. |.
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----------------------~l~~L~~L~Ls~N~L~~-lp~-l~- 179 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTM-LPE-----------------------LPTSLEVLSVRNNQLTF-LPE-LP- 179 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----------------------CCTTCCEEECCSSCCSC-CCC-CC-
T ss_pred cCCC-CCC---cCccccEEeCCCCccCc-CCC-----------------------cCCCcCEEECCCCCCCC-cch-hh-
Confidence 7765 454 46667777777777664 443 23445888999999986 776 66
Q ss_pred cccCCEEECcCCcccCcCcccccCcCCC-------CeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152 634 LVGLVALNLSRNNLTGQITPKIGQLKSL-------DFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 634 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|+++|.+|.
T Consensus 180 -~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 180 -ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 88999999999998 6777 655 77 99999999998 6888888899999999999999988774
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.9e-19 Score=175.59 Aligned_cols=184 Identities=24% Similarity=0.306 Sum_probs=139.7
Q ss_pred CCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCC
Q 047152 71 CKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFA 150 (776)
Q Consensus 71 c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~ 150 (776)
|.|.+|.|... ++. .+|..+ .++|++|++++|.+++. .+..+..+++|++|++++|+++
T Consensus 7 C~~~~v~c~~~-----------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 65 (208)
T 2o6s_A 7 CSGTTVECYSQ-----------------GRT-SVPTGI--PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQ 65 (208)
T ss_dssp EETTEEECCSS-----------------CCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCC
T ss_pred ECCCEEEecCC-----------------Ccc-CCCCCC--CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccC
Confidence 78999999642 111 223222 35899999999999864 5566889999999999999999
Q ss_pred CCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCch
Q 047152 151 GPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPS 230 (776)
Q Consensus 151 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 230 (776)
+..+..|..+++|++|++++|++.. ..+..+.++++|++|++++|.+++++ +..+.++++|++|++++|.+++..+.
T Consensus 66 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 66 SLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLP--DGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCCCEEEcCCCcCcccC--HhHhccCCcCCEEECCCCccceeCHH
Confidence 7666678899999999999999874 44455788899999999999888753 24577888888888888888877776
Q ss_pred hhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCC
Q 047152 231 SLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVS 290 (776)
Q Consensus 231 ~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 290 (776)
.+..+ ++|++|++++|.+.+..+ . ++.|+++.|+++|.+|..++.++.
T Consensus 143 ~~~~l---~~L~~L~l~~N~~~~~~~-------~--l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 143 VFDRL---TSLQYIWLHDNPWDCTCP-------G--IRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTC---TTCCEEECCSCCBCCCTT-------T--THHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HhccC---CCccEEEecCCCeecCCC-------C--HHHHHHHHHhCCceeeccCccccC
Confidence 67766 788888888887765443 2 677777777777777776665543
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=3.7e-19 Score=177.36 Aligned_cols=184 Identities=21% Similarity=0.209 Sum_probs=139.2
Q ss_pred cEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCC
Q 047152 522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNR 601 (776)
Q Consensus 522 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~ 601 (776)
+.++.++++++...... .++|++|+|++|++++..|..|..+++|++|+|++|++.+..+..|..+++|
T Consensus 22 ~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L-------- 90 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL-------- 90 (229)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------
T ss_pred CEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc--------
Confidence 44555555555433322 2678888888888888778888888888888888888876555666666666
Q ss_pred cccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcC
Q 047152 602 SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQ 681 (776)
Q Consensus 602 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 681 (776)
++|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..
T Consensus 91 ------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 91 ------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp ------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred ------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 77889999999777777899999999999999999 78999999999999999999999877788999
Q ss_pred CCCCCeeeCCCCcceecCCCCCcccccc------cccccCCCCCCCCCCCCCCCCC
Q 047152 682 LSGLSVMDLSYNNLSGKIPLGTQLQSFN------ELVYAGNPELCGLPLRNKCPDE 731 (776)
Q Consensus 682 l~~L~~L~ls~N~l~g~iP~~~~~~~~~------~~~~~gN~~lc~~~l~~~c~~~ 731 (776)
+++|+.|++++|++.|.++....+..+- ...+.|++ +..+....|..+
T Consensus 158 l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~--v~~~~~~~C~~~ 211 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKA--VNDPDSAKCAGT 211 (229)
T ss_dssp CTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSE--EECTTCSBBTTT
T ss_pred CCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcc--cCCCCcCccCCC
Confidence 9999999999999999877432222111 12344543 344445567654
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.6e-19 Score=193.33 Aligned_cols=180 Identities=23% Similarity=0.185 Sum_probs=150.7
Q ss_pred CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCcccc-CCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcc
Q 047152 501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCS-LSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNF 579 (776)
Q Consensus 501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 579 (776)
..++++++.++......+..++.|++++|+|++..+..+. .+++|++|+|++|+|++..+..|.++++|++|+|++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 4567777776653333466789999999999998888887 899999999999999988888899999999999999999
Q ss_pred cccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccc---c
Q 047152 580 FGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKI---G 656 (776)
Q Consensus 580 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~ 656 (776)
++..+..|..+++| ++|+|++|++++..|..|..+++|+.|+|++|++++..+..+ .
T Consensus 101 ~~~~~~~~~~l~~L--------------------~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 160 (361)
T 2xot_A 101 HTLDEFLFSDLQAL--------------------EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160 (361)
T ss_dssp CEECTTTTTTCTTC--------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred CcCCHHHhCCCcCC--------------------CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence 98777778777777 788999999998889999999999999999999996444444 5
Q ss_pred CcCCCCeeeCcCceeeecCCccCcCCCC--CCeeeCCCCcceecCC
Q 047152 657 QLKSLDFLDLSRNQFFGGIPSSLSQLSG--LSVMDLSYNNLSGKIP 700 (776)
Q Consensus 657 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N~l~g~iP 700 (776)
.+++|+.|||++|++++..+..+..++. ++.|++++|++.|.+.
T Consensus 161 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp -CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 7999999999999999766677888876 4889999999998654
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=3e-19 Score=190.43 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=42.3
Q ss_pred CCCCEEeCCCCCCCCCCCC-ccccCCCCCCEEecCCCCCCCCCCc-cCCCCCCCCE-EeccCCCCCCCCCchhhccCCCC
Q 047152 112 QHLTYLDLSRNNFSGSSIP-EFLGSLGKLSYLGLSSAEFAGPIPH-QLGNLSRLQF-LDLSFNNLFSGENLDWLSHLSSL 188 (776)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~-L~Ls~n~~~~~~~~~~l~~l~~L 188 (776)
+++++|+|++|+|+. +| ..|.++++|++|+|++|++.+.+|. .|.++++|++ +.++.|++.. ..+..|.++++|
T Consensus 30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCTTC
T ss_pred CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcccc
Confidence 455666666666653 33 3455566666666666665444442 3455555443 3334444432 223334444444
Q ss_pred cEEEccCCCCCC
Q 047152 189 IYLYLDLNDLSN 200 (776)
Q Consensus 189 ~~L~Ls~n~l~~ 200 (776)
++|++++|++..
T Consensus 107 ~~L~l~~n~l~~ 118 (350)
T 4ay9_X 107 QYLLISNTGIKH 118 (350)
T ss_dssp CEEEEEEECCSS
T ss_pred cccccccccccc
Confidence 444444444443
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=171.14 Aligned_cols=156 Identities=20% Similarity=0.183 Sum_probs=136.6
Q ss_pred CeEeccCCcccccCCCCCCCCcEEEccCCccccCCC-ccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcc
Q 047152 501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSIS-FLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNF 579 (776)
Q Consensus 501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 579 (776)
+.+++++|.++...+..+..+++|++++|++++..+ ..+..+++|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 466777777665333335678999999999998855 5688899999999999999988888999999999999999999
Q ss_pred cccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcC
Q 047152 580 FGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLK 659 (776)
Q Consensus 580 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 659 (776)
++..|..|..+++| ++|+|++|++++..|..|..+++|++|+|++|++++..|..|..++
T Consensus 94 ~~~~~~~~~~l~~L--------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 94 ENVQHKMFKGLESL--------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp CCCCGGGGTTCSSC--------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred CccCHhHhcCCcCC--------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence 98888778877777 7899999999998899999999999999999999988899999999
Q ss_pred CCCeeeCcCceeeecCC
Q 047152 660 SLDFLDLSRNQFFGGIP 676 (776)
Q Consensus 660 ~L~~L~Ls~N~l~~~~p 676 (776)
+|++|++++|.+.+..+
T Consensus 154 ~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 154 SLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TCCEEECCSCCEECSGG
T ss_pred CCCEEEecCcCCcCCCc
Confidence 99999999999987654
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1.4e-18 Score=185.32 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=86.9
Q ss_pred CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcE-EEc
Q 047152 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIY-LYL 193 (776)
Q Consensus 115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~-L~L 193 (776)
++++.++++++ ++|..+ .+++++|+|++|+++...+..|+++++|++|+|++|++.+......|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt--~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC--SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC--ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67888888888 578766 3689999999999985444578999999999999998764333456777777665 455
Q ss_pred cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCC
Q 047152 194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTE 248 (776)
Q Consensus 194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~ 248 (776)
+.|+++.++ +..+..+++|++|++++|++....+..+... .++..+++.+
T Consensus 88 ~~N~l~~l~--~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~l~~l~l~~ 137 (350)
T 4ay9_X 88 KANNLLYIN--PEAFQNLPNLQYLLISNTGIKHLPDVHKIHS---LQKVLLDIQD 137 (350)
T ss_dssp EETTCCEEC--TTSBCCCTTCCEEEEEEECCSSCCCCTTCCB---SSCEEEEEES
T ss_pred cCCcccccC--chhhhhccccccccccccccccCCchhhccc---chhhhhhhcc
Confidence 567777643 3556777777777777777766555444333 4455555543
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=5e-18 Score=167.94 Aligned_cols=153 Identities=24% Similarity=0.241 Sum_probs=135.3
Q ss_pred CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152 501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF 580 (776)
Q Consensus 501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (776)
..++++++.++......+.+++.|++++|++++..+..+..+++|++|+|++|++++..|..|.++++|++|+|++|+++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 45666777666543334678999999999999988889999999999999999999988999999999999999999999
Q ss_pred ccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCC
Q 047152 581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKS 660 (776)
Q Consensus 581 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 660 (776)
+..+..|..+++| ++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++
T Consensus 94 ~l~~~~f~~l~~L--------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 153 (220)
T 2v9t_B 94 ELPKSLFEGLFSL--------------------QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153 (220)
T ss_dssp CCCTTTTTTCTTC--------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ccCHhHccCCCCC--------------------CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC
Confidence 6666667777766 78999999999988999999999999999999999877788999999
Q ss_pred CCeeeCcCceeee
Q 047152 661 LDFLDLSRNQFFG 673 (776)
Q Consensus 661 L~~L~Ls~N~l~~ 673 (776)
|++|+|++|.+..
T Consensus 154 L~~L~L~~N~~~c 166 (220)
T 2v9t_B 154 IQTMHLAQNPFIC 166 (220)
T ss_dssp CCEEECCSSCEEC
T ss_pred CCEEEeCCCCcCC
Confidence 9999999999975
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.3e-18 Score=186.22 Aligned_cols=179 Identities=27% Similarity=0.233 Sum_probs=149.2
Q ss_pred CcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhh-CCCCCcEEeccCCcccccCCccccccCCCcEEecC
Q 047152 521 ATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWF-QFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLY 599 (776)
Q Consensus 521 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 599 (776)
-+.+++++++++..+.. + .+.++.|+|++|+|++..+..+. .+++|++|+|++|++++..|..|..+++|
T Consensus 20 ~~~l~c~~~~l~~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 90 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL------ 90 (361)
T ss_dssp TTEEECCSSCCSSCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CCEEEeCCCCcCccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC------
Confidence 46899999999875433 3 25689999999999988788787 89999999999999998888888877777
Q ss_pred CCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccC
Q 047152 600 NRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSL 679 (776)
Q Consensus 600 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 679 (776)
++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+
T Consensus 91 --------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 91 --------------RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp --------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred --------------CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 789999999998888889999999999999999998889999999999999999999996555555
Q ss_pred ---cCCCCCCeeeCCCCcceecCCCC--Ccccc--cccccccCCCCCCCCC
Q 047152 680 ---SQLSGLSVMDLSYNNLSGKIPLG--TQLQS--FNELVYAGNPELCGLP 723 (776)
Q Consensus 680 ---~~l~~L~~L~ls~N~l~g~iP~~--~~~~~--~~~~~~~gN~~lc~~~ 723 (776)
..+++|+.|++++|++++ +|.. ..+.. +..+.+.+||+.|+|.
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp C----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred cCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 578999999999999985 4421 12222 2567899999999874
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.4e-18 Score=168.07 Aligned_cols=155 Identities=22% Similarity=0.260 Sum_probs=124.0
Q ss_pred cEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCc-cccccCCCcEEecCCCcccccccccccccEEEccCCCCc
Q 047152 546 IYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPN-SMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG 624 (776)
Q Consensus 546 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 624 (776)
+++++++|.++ .+|..+.. ++++|++++|++++..+. .++.+++| ++|+|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L--------------------~~L~Ls~N~l~ 67 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL--------------------VKLELKRNQLT 67 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC--------------------CEEECCSSCCC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC--------------------CEEECCCCCCC
Confidence 57777777775 56665433 788888888888766654 36666666 77899999999
Q ss_pred cCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCCCc
Q 047152 625 GGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLGTQ 704 (776)
Q Consensus 625 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 704 (776)
+..|..|+++++|++|+|++|++++..|..|+.+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|....
T Consensus 68 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH
Confidence 88899999999999999999999988888899999999999999999999999999999999999999999998875332
Q ss_pred ccccccccccCCCCCCCCC
Q 047152 705 LQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 705 ~~~~~~~~~~gN~~lc~~~ 723 (776)
...+....+.++...|+.|
T Consensus 148 ~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 148 AEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp HHHHHHHCCSGGGCBBCSS
T ss_pred HHHHHHcCCCCCCCCCCCC
Confidence 2333444455665666654
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=8.6e-18 Score=173.98 Aligned_cols=174 Identities=25% Similarity=0.320 Sum_probs=103.9
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS 187 (776)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 187 (776)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +.++++|++|++++|.+.. ++.+..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---~~~l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD---LSSLKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---GGGGTTCTT
T ss_pred hhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC---ChhhccCCC
Confidence 3456677777777777763 33 36667777777777777765433 6677777777777776642 344666666
Q ss_pred CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCc
Q 047152 188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLV 267 (776)
Q Consensus 188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L 267 (776)
|++|++++|+++++ ..+..+++|++|++++|.+++. +.+..+++ |
T Consensus 114 L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~-----------------------------~~l~~l~~--L 158 (291)
T 1h6t_A 114 LKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI-----------------------------TVLSRLTK--L 158 (291)
T ss_dssp CCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC-----------------------------GGGGGCTT--C
T ss_pred CCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc-----------------------------hhhccCCC--C
Confidence 66666666666553 2344555555555555555443 23334444 5
Q ss_pred CEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCc
Q 047152 268 DRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQ 327 (776)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~ 327 (776)
+.|++++|++++..+ +..+++|++|++++|.++++|. +..+++|+.|++++|.++..
T Consensus 159 ~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 159 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred CEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCC
Confidence 555555555554333 5666666677777776666653 66667777777777766543
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=9.7e-18 Score=173.59 Aligned_cols=189 Identities=22% Similarity=0.330 Sum_probs=128.5
Q ss_pred CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEcc
Q 047152 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD 194 (776)
Q Consensus 115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls 194 (776)
..+.+..+.+.+. ..+..+++|++|++++|.+.. ++ .+..+++|++|++++|++.+ .++ +.++++|++|+++
T Consensus 27 ~~~~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 27 IKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHTTCSCTTSE---ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECC
T ss_pred HHHHhcCCCcccc---cchhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECC
Confidence 3344555555432 223456677777777776663 33 35666666666666666642 111 5555555555555
Q ss_pred CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152 195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS 274 (776)
Q Consensus 195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~ 274 (776)
+|.+++.+ .+..+ ++|++|++++|++++. +.+..+++ |+.|++++
T Consensus 99 ~n~l~~~~----------------------------~l~~l---~~L~~L~L~~n~i~~~--~~l~~l~~--L~~L~l~~ 143 (291)
T 1h6t_A 99 ENKVKDLS----------------------------SLKDL---KKLKSLSLEHNGISDI--NGLVHLPQ--LESLYLGN 143 (291)
T ss_dssp SSCCCCGG----------------------------GGTTC---TTCCEEECTTSCCCCC--GGGGGCTT--CCEEECCS
T ss_pred CCcCCCCh----------------------------hhccC---CCCCEEECCCCcCCCC--hhhcCCCC--CCEEEccC
Confidence 55554421 23333 5566666666665542 34556666 88888888
Q ss_pred CccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccc
Q 047152 275 NQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEI 354 (776)
Q Consensus 275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l 354 (776)
|++++. ..+..+++|++|++++|.+++++. +..+++|++|++++|.+++.. .+..++ +|+.|++++|.+
T Consensus 144 n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~--~l~~l~------~L~~L~l~~n~i 212 (291)
T 1h6t_A 144 NKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR--ALAGLK------NLDVLELFSQEC 212 (291)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG--GGTTCT------TCSEEEEEEEEE
T ss_pred CcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh--hhccCC------CCCEEECcCCcc
Confidence 888875 678999999999999999999776 899999999999999998753 367776 999999999999
Q ss_pred ccc
Q 047152 355 TGS 357 (776)
Q Consensus 355 ~~~ 357 (776)
+..
T Consensus 213 ~~~ 215 (291)
T 1h6t_A 213 LNK 215 (291)
T ss_dssp ECC
T ss_pred cCC
Confidence 863
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.5e-17 Score=164.11 Aligned_cols=155 Identities=23% Similarity=0.206 Sum_probs=135.5
Q ss_pred CeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCccc
Q 047152 501 PGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFF 580 (776)
Q Consensus 501 ~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 580 (776)
..++++++.++......++++++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|+++
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence 56777777766544445789999999999999999999999999999999999998666677899999999999999999
Q ss_pred ccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCC
Q 047152 581 GKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKS 660 (776)
Q Consensus 581 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 660 (776)
+..+..|..+++| ++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++
T Consensus 102 ~l~~~~~~~l~~L--------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 102 VLPSAVFDRLVHL--------------------KELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160 (229)
T ss_dssp CCCTTTTTTCTTC--------------------CEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccChhHhCcchhh--------------------CeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence 7777777777777 78899999999 78999999999999999999999776778999999
Q ss_pred CCeeeCcCceeeecCC
Q 047152 661 LDFLDLSRNQFFGGIP 676 (776)
Q Consensus 661 L~~L~Ls~N~l~~~~p 676 (776)
|+.|++++|.+....+
T Consensus 161 L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 161 LTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCEEECTTSCBCTTBG
T ss_pred CCEEEeeCCCccCCcc
Confidence 9999999999986544
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2.2e-17 Score=187.37 Aligned_cols=129 Identities=24% Similarity=0.314 Sum_probs=72.6
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCC
Q 047152 108 LLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSS 187 (776)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 187 (776)
+..+++|++|++++|.+.. +| .+..+++|++|+|++|++++..| +..+++|++|+|++|.+.. ++.+..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD---LSSLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC---CTTSTTCTT
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC---ChhhccCCC
Confidence 4556666666776666653 33 45666666667666666664433 6666666666666666642 234556666
Q ss_pred CcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCC
Q 047152 188 LIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTN 253 (776)
Q Consensus 188 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~ 253 (776)
|++|+|++|.+.++ ..+..+++|+.|+|++|.+++. ..+..+ ++|+.|+|++|.+.+
T Consensus 111 L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l---~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 111 LKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRL---TKLDTLSLEDNQISD 167 (605)
T ss_dssp CCEEECTTSCCCCC----GGGGGCTTCSEEECCSSCCCCC--GGGGSC---TTCSEEECCSSCCCC
T ss_pred CCEEEecCCCCCCC----ccccCCCccCEEECCCCccCCc--hhhccc---CCCCEEECcCCcCCC
Confidence 66666666665553 2345555555555555555543 233333 444444444444443
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.4e-17 Score=187.08 Aligned_cols=191 Identities=24% Similarity=0.331 Sum_probs=125.1
Q ss_pred CCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEc
Q 047152 114 LTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYL 193 (776)
Q Consensus 114 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L 193 (776)
+..+++..+.+.+. ..+..+++|++|++++|.+.. +| .+..+++|++|+|++|.+.. .+ .+..+++|++|+|
T Consensus 23 l~~l~l~~~~i~~~---~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~--~~-~l~~l~~L~~L~L 94 (605)
T 1m9s_A 23 TIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD--IK-PLTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHTTCSCTTSE---ECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC--CG-GGGGCTTCCEEEC
T ss_pred HHHHhccCCCcccc---cchhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC--Ch-hhccCCCCCEEEC
Confidence 44455565555532 124556677777777777763 33 46677777777777777653 22 2677777777777
Q ss_pred cCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEcc
Q 047152 194 DLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLP 273 (776)
Q Consensus 194 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~ 273 (776)
++|.+.+++ .+..+++|++|+|++|.+.+. ..+..+ ++|+.|+|++|.+++. +.+..+++ |+.|+|+
T Consensus 95 s~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l---~~L~~L~Ls~N~l~~l--~~l~~l~~--L~~L~Ls 161 (605)
T 1m9s_A 95 DENKIKDLS----SLKDLKKLKSLSLEHNGISDI--NGLVHL---PQLESLYLGNNKITDI--TVLSRLTK--LDTLSLE 161 (605)
T ss_dssp CSSCCCCCT----TSTTCTTCCEEECTTSCCCCC--GGGGGC---TTCSEEECCSSCCCCC--GGGGSCTT--CSEEECC
T ss_pred cCCCCCCCh----hhccCCCCCEEEecCCCCCCC--ccccCC---CccCEEECCCCccCCc--hhhcccCC--CCEEECc
Confidence 777776632 466777777777777777653 335555 6777777777777654 45666666 7777777
Q ss_pred CCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCcc
Q 047152 274 SNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQL 328 (776)
Q Consensus 274 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~ 328 (776)
+|.+.+..| +..+++|+.|+|++|.++++| .+..+++|+.|+|++|.+.+..
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 777776555 677777777777777777764 4666777777777777766543
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.2e-20 Score=213.06 Aligned_cols=37 Identities=19% Similarity=0.097 Sum_probs=22.2
Q ss_pred cCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCC
Q 047152 134 GSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFN 171 (776)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 171 (776)
..+++|+.|+|++|+++ .+|..++++++|++|++++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK 382 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccc
Confidence 34556666666666665 55666666666666666444
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.3e-19 Score=204.41 Aligned_cols=121 Identities=22% Similarity=0.233 Sum_probs=80.4
Q ss_pred ccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCc
Q 047152 545 LIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG 624 (776)
Q Consensus 545 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 624 (776)
|+.|+|++|.+++ +|. +..+++|+.|+|++|+++ .+|..++.+++| +.|+|++|+++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L--------------------~~L~Ls~N~l~ 499 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL--------------------EVLQASDNALE 499 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC--------------------CEEECCSSCCC
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC--------------------CEEECCCCCCC
Confidence 5666666666664 454 666677777777777776 566666666555 56677777777
Q ss_pred cCCchhhhccccCCEEECcCCcccCcC-cccccCcCCCCeeeCcCceeeecCCcc---CcCCCCCCeeeC
Q 047152 625 GGVPKEIMDLVGLVALNLSRNNLTGQI-TPKIGQLKSLDFLDLSRNQFFGGIPSS---LSQLSGLSVMDL 690 (776)
Q Consensus 625 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~l 690 (776)
+ +| .++.+++|+.|+|++|++++.+ |..++.+++|+.|+|++|++++.+|.. +..+++|+.||+
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 4 55 6777777777777777777655 777777777777777777777554422 223567777754
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.6e-17 Score=158.94 Aligned_cols=152 Identities=14% Similarity=0.177 Sum_probs=127.1
Q ss_pred CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEe
Q 047152 518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS 597 (776)
Q Consensus 518 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (776)
++++++|++++|.++.. + .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..++.+++|
T Consensus 43 l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---- 114 (197)
T 4ezg_A 43 MNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL---- 114 (197)
T ss_dssp HHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC----
T ss_pred cCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC----
Confidence 46788999999988843 3 5777899999999999775 34578889999999999999988778878777776
Q ss_pred cCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCc-ccCcCcccccCcCCCCeeeCcCceeeecCC
Q 047152 598 LYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNN-LTGQITPKIGQLKSLDFLDLSRNQFFGGIP 676 (776)
Q Consensus 598 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 676 (776)
++|++++|++++..|..++.+++|++|++++|+ ++ .+| .+..+++|++|++++|++++ ++
T Consensus 115 ----------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~ 175 (197)
T 4ezg_A 115 ----------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR 175 (197)
T ss_dssp ----------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT
T ss_pred ----------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH
Confidence 788999999998889999999999999999998 65 566 68999999999999999986 44
Q ss_pred ccCcCCCCCCeeeCCCCccee
Q 047152 677 SSLSQLSGLSVMDLSYNNLSG 697 (776)
Q Consensus 677 ~~l~~l~~L~~L~ls~N~l~g 697 (776)
.+..+++|++|++++|++.+
T Consensus 176 -~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -TGGGCSSCCEEEECBC----
T ss_pred -HhccCCCCCEEEeeCcccCC
Confidence 68899999999999999864
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=2.6e-18 Score=200.10 Aligned_cols=240 Identities=21% Similarity=0.257 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHhcCCCC-CCCCCCCCCCCCCCCCCCccceeeCCCCCcEEEEECCCCCCCCCCCceeccccccCCCCC
Q 047152 36 CIDEEREALLTFKASLVDE-SGILSSWRREDEKRDCCKWTGVGCSKRTGHVNKLDLQPIGFDSFPLRGKITPALLKLQHL 114 (776)
Q Consensus 36 ~~~~~~~~ll~~k~~~~~~-~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~l~g~~~~~l~~l~~L 114 (776)
..+.++++++++..+...+ ...-..|.. .....+.|.++.++ +++++.++|.+ +.+.. .+. ..|
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s--~~~~~~l~L~~-----n~~~~-~~~-----~~l 193 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVS--TPLTPKIELFA-----NGKDE-ANQ-----ALL 193 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceec--CCccceEEeeC-----CCCCc-chh-----hHh
Confidence 4566888999998776421 112335642 34456788888775 36788888876 33332 111 234
Q ss_pred CEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEcc
Q 047152 115 TYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLD 194 (776)
Q Consensus 115 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls 194 (776)
+.++|+.|.+.+. +++.|.+. ..|..+..+++|++|+|++|.+.
T Consensus 194 ~~l~Ls~~~i~~~---------------~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-------------------- 237 (727)
T 4b8c_D 194 QHKKLSQYSIDED---------------DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-------------------- 237 (727)
T ss_dssp --------------------------------------------CCCCCCEEECTTSCCS--------------------
T ss_pred hcCccCcccccCc---------------ccccccee-cChhhhccCCCCcEEECCCCCCC--------------------
Confidence 4455555544321 22333333 33444555555555555555443
Q ss_pred CCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccC
Q 047152 195 LNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPS 274 (776)
Q Consensus 195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~ 274 (776)
. ++..+.++++|++|+|++|.++ .+|..++++ ++ |+.|+|++
T Consensus 238 -----~---l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l---~~--------------------------L~~L~Ls~ 279 (727)
T 4b8c_D 238 -----N---ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL---SN--------------------------LRVLDLSH 279 (727)
T ss_dssp -----C---CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG---TT--------------------------CCEEECTT
T ss_pred -----C---CChhhcCCCCCCEEEeeCCcCc-ccChhhhCC---CC--------------------------CCEEeCcC
Confidence 1 1122223333333333333333 234444444 44 45555555
Q ss_pred CccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccc
Q 047152 275 NQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEI 354 (776)
Q Consensus 275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l 354 (776)
|+++ .+|..|+.+++|++|+|++|.++.+|..|+.+++|++|+|++|.+++.+|..+..... .+..++|++|.+
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-----~~~~l~l~~N~l 353 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-----TGLIFYLRDNRP 353 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-----HHHHHHHHHCCC
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcch-----hhhHHhhccCcc
Confidence 5555 4566666777777777777777777777777777777777777777777777655431 223466777777
Q ss_pred cccCCCccCCCCCCEEeccCc
Q 047152 355 TGSMPNLGEFSSLKQLNLENN 375 (776)
Q Consensus 355 ~~~~~~l~~l~~L~~L~Ls~n 375 (776)
++.+|. .|+.|+++.|
T Consensus 354 ~~~~p~-----~l~~l~l~~n 369 (727)
T 4b8c_D 354 EIPLPH-----ERRFIEINTD 369 (727)
T ss_dssp CCCCCC-----C---------
T ss_pred cCcCcc-----ccceeEeecc
Confidence 766653 4556666655
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=3.4e-17 Score=158.29 Aligned_cols=175 Identities=21% Similarity=0.180 Sum_probs=105.5
Q ss_pred cEEEccCCccccCCCccccCCCCccEEECcCCcccccCCh-hhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCC
Q 047152 522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPD-CWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYN 600 (776)
Q Consensus 522 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 600 (776)
+++++++|+++.. |..+. .++++|++++|++++..+. .|..+++|++|+|++|++++..|..|..+++|
T Consensus 11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------- 80 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------- 80 (192)
T ss_dssp TEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC-------
T ss_pred CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC-------
Confidence 3455555555332 22221 2566777777777655443 36677777777777777777667666666655
Q ss_pred CcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCcc-C
Q 047152 601 RSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSS-L 679 (776)
Q Consensus 601 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l 679 (776)
++|+|++|++++..|..|.++++|++|+|++|++++.+|..+..+++|++|+|++|.+.+..+-. +
T Consensus 81 -------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 81 -------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp -------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred -------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH
Confidence 56677777777766767777777888888888887777777777788888888888777655421 1
Q ss_pred cCCCCCCeeeCCCCcceecCCCCCcccccccccccCCCCCCCCC
Q 047152 680 SQLSGLSVMDLSYNNLSGKIPLGTQLQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 680 ~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~ 723 (776)
. ..++...+..+...|..|.. +....-..+..+...|..+
T Consensus 148 ~--~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 148 A--EWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp H--HHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred H--HHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCC
Confidence 1 11222344455555555532 2233333444454455433
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.7e-16 Score=154.23 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=78.0
Q ss_pred cCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcCCCC
Q 047152 134 GSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHS 213 (776)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 213 (776)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++.+..+++|++|++++|.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~---------------- 99 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKD---------------- 99 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTT----------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCc----------------
Confidence 45566677777766666 444 4666666666666666442 22344444444444444444
Q ss_pred CCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCccccCcchhhcCCCCCCE
Q 047152 214 LTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQLQGSIPEAFGRMVSLRY 293 (776)
Q Consensus 214 L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 293 (776)
+++..+..+..+ ++|++|++++|++++..+..+..+++ |++|++++|.+.+.+| .+..+++|++
T Consensus 100 ----------l~~~~~~~l~~l---~~L~~L~Ls~n~i~~~~~~~l~~l~~--L~~L~L~~n~~i~~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 100 ----------VTSDKIPNLSGL---TSLTLLDISHSAHDDSILTKINTLPK--VNSIDLSYNGAITDIM-PLKTLPELKS 163 (197)
T ss_dssp ----------CBGGGSCCCTTC---TTCCEEECCSSBCBGGGHHHHTTCSS--CCEEECCSCTBCCCCG-GGGGCSSCCE
T ss_pred ----------cCcccChhhcCC---CCCCEEEecCCccCcHhHHHHhhCCC--CCEEEccCCCCccccH-hhcCCCCCCE
Confidence 433333333333 44555555555554444444444444 4555555544222233 3555566666
Q ss_pred EEccCCCCCCCchhhcccCCCcEEeccCCcCC
Q 047152 294 LDLSSNELRGIPKFLGNMCGLKILYLSGKELK 325 (776)
Q Consensus 294 L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~ 325 (776)
|++++|.+++++ .+..+++|++|++++|.+.
T Consensus 164 L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 164 LNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 666666665554 4555555555555555543
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=154.40 Aligned_cols=131 Identities=25% Similarity=0.286 Sum_probs=108.0
Q ss_pred cEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCcc
Q 047152 546 IYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGG 625 (776)
Q Consensus 546 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 625 (776)
+++++++|.++ .+|..+. ++|++|++++|+++ .+|..|..+++| ++|+|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L--------------------~~L~Ls~N~i~~ 68 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL--------------------TLIDLSNNRIST 68 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------CEEECCSSCCCC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------CEEECCCCcCCE
Confidence 46777777776 5555442 57888888888887 566667666666 678888888888
Q ss_pred CCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCC
Q 047152 626 GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP 700 (776)
Q Consensus 626 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 700 (776)
..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.|.++
T Consensus 69 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 69 LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred eCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 778889999999999999999998878889999999999999999997777789999999999999999998765
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.8e-16 Score=161.32 Aligned_cols=148 Identities=22% Similarity=0.269 Sum_probs=118.4
Q ss_pred CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEe
Q 047152 518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS 597 (776)
Q Consensus 518 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (776)
+.+|++|++++|+++... .+..+++|++|++++|++++..+ +..+++|++|++++|++++ +|.. ..
T Consensus 40 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-------- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-------- 105 (263)
T ss_dssp HTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC--------
T ss_pred cCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc--------
Confidence 567888888888877543 56678888888888888885444 7888888888888888875 3321 11
Q ss_pred cCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCc
Q 047152 598 LYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPS 677 (776)
Q Consensus 598 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 677 (776)
++|+.|++++|++++ ++ .++.+++|+.|++++|++++ ++ .++.+++|++|++++|++++. .
T Consensus 106 -------------~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 106 -------------ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp -------------SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred -------------CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--H
Confidence 345889999999985 44 68999999999999999985 44 688999999999999999976 6
Q ss_pred cCcCCCCCCeeeCCCCcceec
Q 047152 678 SLSQLSGLSVMDLSYNNLSGK 698 (776)
Q Consensus 678 ~l~~l~~L~~L~ls~N~l~g~ 698 (776)
.+..+++|+.|++++|++++.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECC
T ss_pred HhccCCCCCEEeCCCCcccCC
Confidence 788999999999999999865
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=8.4e-17 Score=163.80 Aligned_cols=124 Identities=21% Similarity=0.310 Sum_probs=65.0
Q ss_pred CCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCcE
Q 047152 111 LQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLIY 190 (776)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 190 (776)
+..++.++++++.+++ ++ .+..+++|++|++++|+++ .+| .+..+++|++|++++|++.+ .++ +.++++|++
T Consensus 18 l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCE
T ss_pred HHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCE
Confidence 4445555666666553 33 3555666666666666665 344 45566666666666666542 122 555566666
Q ss_pred EEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCC
Q 047152 191 LYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLT 252 (776)
Q Consensus 191 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~ 252 (776)
|++++|++++++. +.. ++|++|++++|++++. ..+..+ ++|++|++++|+++
T Consensus 90 L~L~~N~l~~l~~----~~~-~~L~~L~L~~N~l~~~--~~l~~l---~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 90 LSVNRNRLKNLNG----IPS-ACLSRLFLDNNELRDT--DSLIHL---KNLEILSIRNNKLK 141 (263)
T ss_dssp EECCSSCCSCCTT----CCC-SSCCEEECCSSCCSBS--GGGTTC---TTCCEEECTTSCCC
T ss_pred EECCCCccCCcCc----ccc-CcccEEEccCCccCCC--hhhcCc---ccccEEECCCCcCC
Confidence 6666665555322 111 5555555555555442 123333 45555555555544
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=4.7e-16 Score=146.86 Aligned_cols=132 Identities=27% Similarity=0.245 Sum_probs=99.1
Q ss_pred CCccEEECcCCccc-ccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCC
Q 047152 543 NRLIYLDLSNNLLS-GKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSN 621 (776)
Q Consensus 543 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N 621 (776)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++| ++|++++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------------------~~L~Ls~N 81 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL--------------------KKLELSEN 81 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC--------------------CEEEEESC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC--------------------CEEECcCC
Confidence 56777777777776 66677777777788888888777654 445555554 67788888
Q ss_pred CCccCCchhhhccccCCEEECcCCcccCcC-cccccCcCCCCeeeCcCceeeecCC---ccCcCCCCCCeeeCCCCcce
Q 047152 622 KLGGGVPKEIMDLVGLVALNLSRNNLTGQI-TPKIGQLKSLDFLDLSRNQFFGGIP---SSLSQLSGLSVMDLSYNNLS 696 (776)
Q Consensus 622 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~ 696 (776)
++++.+|..+..+++|++|++++|++++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 82 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888777777777888888888888888532 2678888888888888888885554 47788888888888888876
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=4.8e-16 Score=143.53 Aligned_cols=128 Identities=25% Similarity=0.260 Sum_probs=95.2
Q ss_pred CCccEEECcCCccc-ccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCC
Q 047152 543 NRLIYLDLSNNLLS-GKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSN 621 (776)
Q Consensus 543 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N 621 (776)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++| ++|++++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------------------~~L~Ls~n 74 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL--------------------KKLELSDN 74 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC--------------------CEEECCSS
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC--------------------CEEECCCC
Confidence 56777777777776 66777777777778888877777654 445545444 67788888
Q ss_pred CCccCCchhhhccccCCEEECcCCcccCc-CcccccCcCCCCeeeCcCceeeecCC---ccCcCCCCCCeeeCCC
Q 047152 622 KLGGGVPKEIMDLVGLVALNLSRNNLTGQ-ITPKIGQLKSLDFLDLSRNQFFGGIP---SSLSQLSGLSVMDLSY 692 (776)
Q Consensus 622 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~ 692 (776)
++++.+|..++.+++|++|++++|++++. .+..++.+++|++|++++|++++..+ ..+..+++|++||+++
T Consensus 75 ~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88876787777788888888888888753 34778888888888888888886655 4677788888888764
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=2.1e-15 Score=143.69 Aligned_cols=134 Identities=21% Similarity=0.154 Sum_probs=106.4
Q ss_pred ccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCc
Q 047152 545 LIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLG 624 (776)
Q Consensus 545 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 624 (776)
.+.+++++|.++ .+|..+ .++|+.|++++|++++..+..+..+++| ++|++++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L--------------------~~L~l~~n~l~ 65 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL--------------------TKLSLSQNQIQ 65 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC--------------------SEEECCSSCCC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc--------------------cEEECCCCcce
Confidence 456777777776 445433 3578888888888876666566666665 67888888888
Q ss_pred cCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152 625 GGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 625 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
+..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.|.+|.
T Consensus 66 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 66 SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 76667788999999999999999977777788999999999999999977666678899999999999999988774
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=8.4e-17 Score=187.36 Aligned_cols=192 Identities=18% Similarity=0.120 Sum_probs=75.2
Q ss_pred cccEEEcccccCcccCCcccccccCCCCeEeccCCcccccCCCCCCCCcEEEccCCccccCCCccccCCCCccEEECcCC
Q 047152 474 QRMLLNLSSNQMRGKVPDLSLRFDISGPGIDISSNHFEGPIPPLPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNN 553 (776)
Q Consensus 474 ~L~~L~l~~n~l~g~~p~~~~~~~~~l~~l~l~~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N 553 (776)
....+++..|.+... +. ..+..++++.|.+.+ +++..|.+. ..+..+..++.|+.|+|++|
T Consensus 174 ~~~~l~L~~n~~~~~-~~------~~l~~l~Ls~~~i~~-----------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n 234 (727)
T 4b8c_D 174 LTPKIELFANGKDEA-NQ------ALLQHKKLSQYSIDE-----------DDDIENRMV-MPKDSKYDDQLWHALDLSNL 234 (727)
T ss_dssp -------------------------------------------------------------------CCCCCCEEECTTS
T ss_pred ccceEEeeCCCCCcc-hh------hHhhcCccCcccccC-----------cccccccee-cChhhhccCCCCcEEECCCC
Confidence 456677777766542 21 112344455544432 122222222 22334444555555555555
Q ss_pred cccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCccccc---ccccccccEEEccCCCCccCCchh
Q 047152 554 LLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEY---KSTLGLVKILDLSSNKLGGGVPKE 630 (776)
Q Consensus 554 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~p~~ 630 (776)
.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|+++.+..+ +..+++|++|+|++|.|+ .+|..
T Consensus 235 ~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~ 311 (727)
T 4b8c_D 235 QIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWE 311 (727)
T ss_dssp CCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred CCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChh
Confidence 554 44444445555555555555555 4455555555553333333222111 122333366777777776 66666
Q ss_pred hhccccCCEEECcCCcccCcCcccccCcCC-CCeeeCcCceeeecCCccCcCCCCCCeeeCCCC
Q 047152 631 IMDLVGLVALNLSRNNLTGQITPKIGQLKS-LDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYN 693 (776)
Q Consensus 631 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 693 (776)
|+.+++|++|+|++|++++.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++|
T Consensus 312 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 777777777777777777777766655422 223667777777776654 345556655
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.2e-15 Score=144.14 Aligned_cols=138 Identities=27% Similarity=0.241 Sum_probs=117.6
Q ss_pred CCCCcEEEccCCccc-cCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEE
Q 047152 518 PSNATSLNLSKNKFS-GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSL 596 (776)
Q Consensus 518 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 596 (776)
++++++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--- 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL--- 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC---
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC---
Confidence 467999999999998 67777788899999999999999865 778899999999999999998788777667766
Q ss_pred ecCCCcccccccccccccEEEccCCCCccCC-chhhhccccCCEEECcCCcccCcCc---ccccCcCCCCeeeCcCceee
Q 047152 597 SLYNRSQYEYKSTLGLVKILDLSSNKLGGGV-PKEIMDLVGLVALNLSRNNLTGQIT---PKIGQLKSLDFLDLSRNQFF 672 (776)
Q Consensus 597 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~ 672 (776)
++|++++|++++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 98 -----------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 98 -----------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp -----------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred -----------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 78899999998642 2789999999999999999996544 48899999999999999987
Q ss_pred ecCCcc
Q 047152 673 GGIPSS 678 (776)
Q Consensus 673 ~~~p~~ 678 (776)
.+|..
T Consensus 161 -~~~~~ 165 (168)
T 2ell_A 161 -EAPDS 165 (168)
T ss_dssp -BCCSS
T ss_pred -hcccc
Confidence 55543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.2e-15 Score=139.13 Aligned_cols=129 Identities=23% Similarity=0.230 Sum_probs=111.0
Q ss_pred CCCCcEEEccCCccc-cCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEE
Q 047152 518 PSNATSLNLSKNKFS-GSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSL 596 (776)
Q Consensus 518 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 596 (776)
+++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--- 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL--- 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC---
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC---
Confidence 467899999999998 67788888899999999999999866 778899999999999999998788777667666
Q ss_pred ecCCCcccccccccccccEEEccCCCCccC-CchhhhccccCCEEECcCCcccCcCc---ccccCcCCCCeeeCcC
Q 047152 597 SLYNRSQYEYKSTLGLVKILDLSSNKLGGG-VPKEIMDLVGLVALNLSRNNLTGQIT---PKIGQLKSLDFLDLSR 668 (776)
Q Consensus 597 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~ 668 (776)
++|++++|++++. .+..++.+++|++|++++|++++..+ ..++.+++|+.||+++
T Consensus 91 -----------------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 -----------------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -----------------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -----------------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7889999999863 44889999999999999999997555 4789999999999874
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=138.45 Aligned_cols=129 Identities=20% Similarity=0.234 Sum_probs=103.9
Q ss_pred cEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCC
Q 047152 522 TSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNR 601 (776)
Q Consensus 522 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~ 601 (776)
+.+++++|+++...... .++|++|++++|+++ .+|..|.++++|++|+|++|++++..+..|..+++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------- 80 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC--------
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC--------
Confidence 45666666665433222 257888888888887 677888889999999999999988777778777776
Q ss_pred cccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeec
Q 047152 602 SQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGG 674 (776)
Q Consensus 602 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 674 (776)
++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+...
T Consensus 81 ------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 81 ------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp ------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred ------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 6788999999988888899999999999999999966666788999999999999998743
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=4e-14 Score=134.79 Aligned_cols=114 Identities=24% Similarity=0.207 Sum_probs=79.5
Q ss_pred CCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCC
Q 047152 543 NRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNK 622 (776)
Q Consensus 543 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~ 622 (776)
++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++| ++|++++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------~~L~l~~N~ 87 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL--------------------TILYLHENK 87 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC--------------------CEEECCSSC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc--------------------CEEECCCCC
Confidence 456667777777665555556667777777777777765555555555555 567777777
Q ss_pred CccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCC
Q 047152 623 LGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIP 676 (776)
Q Consensus 623 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 676 (776)
+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 776666667778888888888888875555556778888888888888876554
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1.7e-14 Score=152.22 Aligned_cols=102 Identities=12% Similarity=0.019 Sum_probs=63.1
Q ss_pred CCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCC-EEECcC
Q 047152 566 FDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLV-ALNLSR 644 (776)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~ 644 (776)
+++|+.+++++|+++...+..|.++.+| +.+++++| ++...+..|.++++|+ .+++.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L--------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYL--------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTC--------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCC--------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 5566666666666654445555555555 44555555 4444455666666676 677666
Q ss_pred CcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeee
Q 047152 645 NNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMD 689 (776)
Q Consensus 645 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 689 (776)
+++...+..|.++++|+.+++++|++....+..|.++++|+.++
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 55544456666777777777777777666666677777776664
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=5.3e-15 Score=156.08 Aligned_cols=283 Identities=15% Similarity=0.093 Sum_probs=159.5
Q ss_pred CCCCCEEecCCCCCCCCCCccCCC-CCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCCCCCcchhhHhhcC----
Q 047152 136 LGKLSYLGLSSAEFAGPIPHQLGN-LSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLNDLSNFSNWVQLLSK---- 210 (776)
Q Consensus 136 l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~---- 210 (776)
+.+++.|.++++ +.+.-...+.. +++|++|||++|++..... .-+.++.++.+.+..|.+.. ..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~--~~~~~~~~~~~~~~~~~I~~-----~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSG--KAGTYPNGKFYIYMANFVPA-----YAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEE--SSSSSGGGCCEEECTTEECT-----TTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecC--ccccccccccccccccccCH-----HHhcccccc
Confidence 567888888764 21111112333 6778888888888751000 01112223444444443332 34555
Q ss_pred ----CCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCEEEccCCc----cccCcc
Q 047152 211 ----LHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDRISLPSNQ----LQGSIP 282 (776)
Q Consensus 211 ----l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~----l~~~~p 282 (776)
+++|+++++.. .++.+.+..|.++ ++|+.++++.|.+....+..|.++.+ +..+....+. ......
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~---~~L~~l~l~~n~i~~i~~~aF~~~~~--l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGC---DNLKICQIRKKTAPNLLPEALADSVT--AIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTC---TTCCEEEBCCSSCCEECTTSSCTTTC--EEEECTTCTHHHHTSTTTTT
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcC---cccceEEcCCCCccccchhhhcCCCc--eEEecCcchhhhhccccccc
Confidence 77777777777 6666666666666 67777777777665444444444433 4444443321 111222
Q ss_pred hhhcCCCCCC-EEEccCCCCCCCchhhc----ccCCCcEEeccCCcCCCccchHHh-hccCCCcCCCccEEEcccccccc
Q 047152 283 EAFGRMVSLR-YLDLSSNELRGIPKFLG----NMCGLKILYLSGKELKGQLSEFIQ-DLSSGCTKNSLEWLHLSSNEITG 356 (776)
Q Consensus 283 ~~l~~l~~L~-~L~L~~n~l~~ip~~l~----~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~~~~~~L~~L~L~~n~l~~ 356 (776)
.+|.++..|+ .+.+... ..++..+. ...+++.+.+.++-.. .....+. .++ +|+.++|++|+++.
T Consensus 170 ~~f~~~~~L~~~i~~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~------~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAM--GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMP------NLVSLDISKTNATT 240 (329)
T ss_dssp SCEEESCCCEEEEEECTT--CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCT------TCCEEECTTBCCCE
T ss_pred cccccccccceeEEecCC--CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcC------CCeEEECCCCCcce
Confidence 3344555555 3433321 12222211 2345555555544221 1111122 233 78888888877775
Q ss_pred cCCC-ccCCCCCCEEeccCccccccchhcccCCCCCc-EEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCC
Q 047152 357 SMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLE-MLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDW 434 (776)
Q Consensus 357 ~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 434 (776)
..+. |..+++|+.+++.+| ++...+..|.++++|+ .+++.+ .++ .++...|.++++|+.++++.|.++...+..|
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence 5544 777788888888776 6655566777788887 888877 553 4444467788888888887777777777777
Q ss_pred CCCCCCcEEE
Q 047152 435 IPPFQLNTIS 444 (776)
Q Consensus 435 ~~~~~L~~L~ 444 (776)
..+.+|+.++
T Consensus 318 ~~~~~L~~ly 327 (329)
T 3sb4_A 318 GNGVPSKLIY 327 (329)
T ss_dssp CTTCCCCEEE
T ss_pred cCCcchhhhc
Confidence 7777777665
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.5e-14 Score=136.02 Aligned_cols=134 Identities=19% Similarity=0.221 Sum_probs=96.8
Q ss_pred ccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEc
Q 047152 539 CSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDL 618 (776)
Q Consensus 539 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~L 618 (776)
+..+++|++|++++|+++. +|......++|++|++++|.+++. ..+..+++| ++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L--------------------~~L~L 71 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRL--------------------KTLLV 71 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSC--------------------CEEEC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCC--------------------CEEEC
Confidence 3346677788888887773 444333334788888888887754 345555444 67888
Q ss_pred cCCCCccCCchhhhccccCCEEECcCCcccCcCcc--cccCcCCCCeeeCcCceeeecCCcc----CcCCCCCCeeeCCC
Q 047152 619 SSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITP--KIGQLKSLDFLDLSRNQFFGGIPSS----LSQLSGLSVMDLSY 692 (776)
Q Consensus 619 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~ls~ 692 (776)
++|++++..+..++.+++|++|++++|+++ .+|. .++.+++|+.|++++|++. .+|.. +..+++|++||+++
T Consensus 72 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 72 NNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred CCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence 888888654455588888888888888886 4665 7888888888888888887 45654 77888888888888
Q ss_pred Cccee
Q 047152 693 NNLSG 697 (776)
Q Consensus 693 N~l~g 697 (776)
|....
T Consensus 150 n~~~~ 154 (176)
T 1a9n_A 150 VKLKE 154 (176)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 87764
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=4.1e-16 Score=151.60 Aligned_cols=83 Identities=24% Similarity=0.197 Sum_probs=36.6
Q ss_pred EEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCC-ccCcCCCCCCeeeCCCC
Q 047152 615 ILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIP-SSLSQLSGLSVMDLSYN 693 (776)
Q Consensus 615 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N 693 (776)
+|++++|+++ .+|..+..+++|++|++++|++++ +| .++.+++|++|++++|++++..+ ..+..+++|++|++++|
T Consensus 74 ~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 74 ILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred EEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 3444444444 344444444444444444444443 22 34444444444444444443211 23444444444444444
Q ss_pred cceecCC
Q 047152 694 NLSGKIP 700 (776)
Q Consensus 694 ~l~g~iP 700 (776)
++++.+|
T Consensus 151 ~l~~~~~ 157 (198)
T 1ds9_A 151 PLYNDYK 157 (198)
T ss_dssp HHHHHHH
T ss_pred ccccccc
Confidence 4444443
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=9.9e-14 Score=130.83 Aligned_cols=111 Identities=20% Similarity=0.177 Sum_probs=93.0
Q ss_pred CcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCccc
Q 047152 569 LVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLT 648 (776)
Q Consensus 569 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 648 (776)
.+.+++++|.++ .+|..+. ++ +++|+|++|+|++..|..|+++++|++|+|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~--------------------l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TT--------------------TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TT--------------------CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCEEEeCCCCcC-ccCccCC--CC--------------------CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence 457777777776 3554432 33 378899999999888889999999999999999999
Q ss_pred CcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCCC
Q 047152 649 GQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPLG 702 (776)
Q Consensus 649 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 702 (776)
+..+..|..+++|++|+|++|++++..|..|..+++|++|++++|+++|.++..
T Consensus 68 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l 121 (170)
T 3g39_A 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence 777777899999999999999999877778999999999999999999887643
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6.1e-14 Score=133.31 Aligned_cols=131 Identities=20% Similarity=0.166 Sum_probs=108.3
Q ss_pred CCCCcEEEccCCccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEe
Q 047152 518 PSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLS 597 (776)
Q Consensus 518 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (776)
+.++++|++++|+++.. +......++|++|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---- 90 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL---- 90 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC----
T ss_pred cCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC----
Confidence 46788999999998854 54444455999999999999965 678899999999999999986655555667666
Q ss_pred cCCCcccccccccccccEEEccCCCCccCCch--hhhccccCCEEECcCCcccCcCccc----ccCcCCCCeeeCcCcee
Q 047152 598 LYNRSQYEYKSTLGLVKILDLSSNKLGGGVPK--EIMDLVGLVALNLSRNNLTGQITPK----IGQLKSLDFLDLSRNQF 671 (776)
Q Consensus 598 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l 671 (776)
++|++++|+++ .+|. .++.+++|+.|++++|.++ .+|.. ++.+++|+.||+++|.+
T Consensus 91 ----------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 ----------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ----------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ----------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 78899999996 5666 8899999999999999998 56764 88999999999999987
Q ss_pred ee
Q 047152 672 FG 673 (776)
Q Consensus 672 ~~ 673 (776)
..
T Consensus 153 ~~ 154 (176)
T 1a9n_A 153 KE 154 (176)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=2.9e-13 Score=128.02 Aligned_cols=109 Identities=23% Similarity=0.229 Sum_probs=89.6
Q ss_pred cEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEEccCCCCccCCchhhhccccCCEEECcCCcccC
Q 047152 570 VILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTG 649 (776)
Q Consensus 570 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 649 (776)
+.+++++|.+. .+|..+. ++ |++|+|++|++++..|..|+++++|++|+|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~--------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 71 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TD--------------------KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TT--------------------CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cEEEeCCCCCC-ccCCCcC--CC--------------------CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc
Confidence 56777777775 5565442 33 3778899999998888899999999999999999997
Q ss_pred cCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCCC
Q 047152 650 QITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPL 701 (776)
Q Consensus 650 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (776)
..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++.+.++.
T Consensus 72 i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 5556678999999999999999977666799999999999999999987653
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=3.6e-15 Score=144.84 Aligned_cols=150 Identities=27% Similarity=0.354 Sum_probs=97.8
Q ss_pred cCEEEccCCccccCcch------hhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCc
Q 047152 267 VDRISLPSNQLQGSIPE------AFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCT 340 (776)
Q Consensus 267 L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~ 340 (776)
++.++++.+.+.+.+|. .+..+++|++|++++|.++++| .+..+++|++|++++|.++ .+|..+..++
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~---- 93 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVAD---- 93 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH----
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCC----
Confidence 44444444444444443 6667777777777777777766 6667777777777777776 3455555555
Q ss_pred CCCccEEEcccccccccCCCccCCCCCCEEeccCccccccch-hcccCCCCCcEEECCCccccccccH---------Hhh
Q 047152 341 KNSLEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIH-KSIGQLFKLEMLKLNGNSLGGVISE---------ALF 410 (776)
Q Consensus 341 ~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~---------~~~ 410 (776)
+|++|++++|++++ +|.+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++.+|. ..+
T Consensus 94 --~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 94 --TLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp --HCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred --cCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 67777777777775 3456667777777777777775332 4567777778888887777655432 236
Q ss_pred hCCCCCcEEECCCCccc
Q 047152 411 SNLSRLAALDLADNSLT 427 (776)
Q Consensus 411 ~~l~~L~~L~Ls~n~l~ 427 (776)
..+++|+.|| ++.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 6778888776 55554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=8.3e-13 Score=124.44 Aligned_cols=108 Identities=25% Similarity=0.238 Sum_probs=96.2
Q ss_pred ccEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCC
Q 047152 613 VKILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSY 692 (776)
Q Consensus 613 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 692 (776)
.+.+++++|+++ .+|..+. +.|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 478999999999 5787664 8899999999999988899999999999999999999988888889999999999999
Q ss_pred CcceecCCC-CCcccccccccccCCCCCCCCC
Q 047152 693 NNLSGKIPL-GTQLQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 693 N~l~g~iP~-~~~~~~~~~~~~~gN~~lc~~~ 723 (776)
|++++..|. ...+..+..+.+.+||+.|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999976654 3567788899999999999875
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=1.7e-12 Score=122.71 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=94.9
Q ss_pred cEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCC
Q 047152 614 KILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYN 693 (776)
Q Consensus 614 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 693 (776)
+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|+.+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 68999999997 7887765 89999999999999888999999999999999999999877777899999999999999
Q ss_pred cceecCCC-CCcccccccccccCCCCCCCCC
Q 047152 694 NLSGKIPL-GTQLQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 694 ~l~g~iP~-~~~~~~~~~~~~~gN~~lc~~~ 723 (776)
++++..|. ...+..+..+.+.+|++-|.++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99975553 3567788889999999999875
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=6.8e-11 Score=127.32 Aligned_cols=65 Identities=6% Similarity=0.007 Sum_probs=31.7
Q ss_pred chhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCC-CCCeeeCCCCc
Q 047152 628 PKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLS-GLSVMDLSYNN 694 (776)
Q Consensus 628 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~ 694 (776)
...|.++++|+.++|..| ++..-+..|.++ +|+.+++++|.+....+..|..++ .++.|.+..+.
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 334445555555555333 333334445555 555555555555544444455542 45555555444
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.32 E-value=3.8e-11 Score=129.28 Aligned_cols=271 Identities=13% Similarity=0.118 Sum_probs=146.4
Q ss_pred CCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccCCCCc
Q 047152 110 KLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHLSSLI 189 (776)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 189 (776)
.+..++.+.+..+ ++.+ -...|.++ +|+.+++..+ ++..-..+|.++ +|+.+++.. .+.. .....|.++++|+
T Consensus 111 ~~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~-I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQ-LKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCE-ECSSTTTTCTTCC
T ss_pred ecCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccE-ehHHHhhCcccCC
Confidence 3466777777643 4432 23456654 6888888765 554444566664 688888875 3432 3345677788888
Q ss_pred EEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCCCCcCE
Q 047152 190 YLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSSSLVDR 269 (776)
Q Consensus 190 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~ 269 (776)
.++++.|.++.++. ..|. +++|+.+.+..+ +..+....|.++ ++|+.+++..+ ++......|.+ .+ |+.
T Consensus 184 ~l~l~~n~l~~I~~--~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~---~~L~~l~l~~~-l~~I~~~aF~~-~~--L~~ 252 (401)
T 4fdw_A 184 KADLSKTKITKLPA--STFV-YAGIEEVLLPVT-LKEIGSQAFLKT---SQLKTIEIPEN-VSTIGQEAFRE-SG--ITT 252 (401)
T ss_dssp EEECTTSCCSEECT--TTTT-TCCCSEEECCTT-CCEECTTTTTTC---TTCCCEECCTT-CCEECTTTTTT-CC--CSE
T ss_pred eeecCCCcceEech--hhEe-ecccCEEEeCCc-hheehhhHhhCC---CCCCEEecCCC-ccCcccccccc-CC--ccE
Confidence 88887777776532 2333 567777777633 555555666666 66777777653 32222222333 33 566
Q ss_pred EEccCCccccCcchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEc
Q 047152 270 ISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHL 349 (776)
Q Consensus 270 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L 349 (776)
+.+ .+.++.....+|.++++|+.+++.+|.+..- .........|..+. +|+.+++
T Consensus 253 i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~------------------~~~~I~~~aF~~c~------~L~~l~l 307 (401)
T 4fdw_A 253 VKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDD------------------PEAMIHPYCLEGCP------KLARFEI 307 (401)
T ss_dssp EEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCC------------------TTCEECTTTTTTCT------TCCEECC
T ss_pred EEe-CCCccEEChhHhhCCCCCCEEEeCCccccCC------------------cccEECHHHhhCCc------cCCeEEe
Confidence 655 2334444445566666666666655544310 00012223333333 4555555
Q ss_pred ccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCC-CCcEEECCCCccc
Q 047152 350 SSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLS-RLAALDLADNSLT 427 (776)
Q Consensus 350 ~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~ 427 (776)
.+ .++..... |.++++|+.+++..+ ++.....+|.++ +|+.+++.+|.+.... ...|.+++ .++.+.+..+.+.
T Consensus 308 ~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~-~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 308 PE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF-EKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC-CSSCCCSCTTCCEEEECGGGHH
T ss_pred CC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc-cccccCCCCCccEEEeCHHHHH
Confidence 42 23322222 555666666666443 443445556666 6666666666654322 22455553 5666666665543
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=6.1e-12 Score=133.69 Aligned_cols=86 Identities=21% Similarity=0.096 Sum_probs=52.2
Q ss_pred cEEEccC-CCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCC
Q 047152 614 KILDLSS-NKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSY 692 (776)
Q Consensus 614 ~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 692 (776)
+.|+|++ |+|++..+..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..+..++ |+.|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 4555654 666655555666666666666666666665566666666666666666666654444444444 66666666
Q ss_pred CcceecCC
Q 047152 693 NNLSGKIP 700 (776)
Q Consensus 693 N~l~g~iP 700 (776)
|++.+.++
T Consensus 113 N~~~c~c~ 120 (347)
T 2ifg_A 113 NPLHCSCA 120 (347)
T ss_dssp SCCCCCGG
T ss_pred CCccCCCc
Confidence 66665543
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.4e-11 Score=130.82 Aligned_cols=108 Identities=22% Similarity=0.236 Sum_probs=94.9
Q ss_pred cEEEccCC-CCccCCchhhhccccCCEEECcC-CcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCC
Q 047152 614 KILDLSSN-KLGGGVPKEIMDLVGLVALNLSR-NNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLS 691 (776)
Q Consensus 614 ~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 691 (776)
..++++++ +++ .+|. +..+++|+.|+|++ |+|++..+..|+++++|+.|+|++|+|++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35799998 898 5888 99999999999996 99998888899999999999999999999999999999999999999
Q ss_pred CCcceecCCCCCcccccccccccCCCCCCCCC
Q 047152 692 YNNLSGKIPLGTQLQSFNELVYAGNPELCGLP 723 (776)
Q Consensus 692 ~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~ 723 (776)
+|+|++..|.......+..+.+.+|++-|+|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 99999755543333348888999999999875
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=3e-12 Score=136.58 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=24.5
Q ss_pred hhcCCCCCCEEEccCCCCCC-----CchhhcccCCCcEEeccCCcCCCccchHHh
Q 047152 284 AFGRMVSLRYLDLSSNELRG-----IPKFLGNMCGLKILYLSGKELKGQLSEFIQ 333 (776)
Q Consensus 284 ~l~~l~~L~~L~L~~n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 333 (776)
.+...++|++|+|++|.+++ ++..+...++|++|++++|.+++.....+.
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 34444555555555555543 223334445555555555555544444333
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.19 E-value=3.5e-10 Score=122.24 Aligned_cols=310 Identities=11% Similarity=0.061 Sum_probs=151.5
Q ss_pred cccccCCCCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhcc
Q 047152 105 TPALLKLQHLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSH 184 (776)
Q Consensus 105 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~ 184 (776)
..+|.++++|+.+.+..+ ++.+ -..+|.++++|+.+++.++ ++......|.++.+|+.+.+..+- .. .....|.+
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~-i~~~aF~~ 138 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KS-IGVEAFKG 138 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CE-ECTTTTTT
T ss_pred HHHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-ee-ecceeeec
Confidence 356788888888888643 5532 3456888888888888754 443344567788888877765442 11 22234455
Q ss_pred CCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhhcCC
Q 047152 185 LSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFNVSS 264 (776)
Q Consensus 185 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 264 (776)
+..++..........+ ...|.++++|+.+.+..+ +.......|.++ .+|+.+++..+ +.......+.++..
T Consensus 139 ~~~~~~~~~~~~~~i~----~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c---~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIG----DEAFATCESLEYVSLPDS-METLHNGLFSGC---GKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp CCCSEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCEECTTTTTTC---TTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred ccccccccCccccccc----hhhhcccCCCcEEecCCc-cceeccccccCC---CCceEEEcCCC-ceEeCchhhccccc
Confidence 5443333322221111 234666777777776543 222333444444 55555555443 22122223334444
Q ss_pred CCcCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCC-chhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCC
Q 047152 265 SLVDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGI-PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNS 343 (776)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 343 (776)
|+.+.+..+... +........+|+.+.+... ++.+ ...+..+..++.+.+..+... .....+.... .
T Consensus 210 --L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~------~ 277 (394)
T 4fs7_A 210 --LENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCS------G 277 (394)
T ss_dssp --CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT------T
T ss_pred --cceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eecccccccc------c
Confidence 444444433221 1222333445555555432 2222 123445555555555444221 2222233333 4
Q ss_pred ccEEEcccccccccCCCccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCC
Q 047152 344 LEWLHLSSNEITGSMPNLGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLAD 423 (776)
Q Consensus 344 L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 423 (776)
++.+....+.+. ...+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++ .+....|.++.+|+.+++..
T Consensus 278 l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 278 LKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp CCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCT
T ss_pred cceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECc
Confidence 555544443221 011455556666665443 33333445555666666666433 32 33333556666666666654
Q ss_pred CccceecCCCCCCCCCCcEEEcc
Q 047152 424 NSLTLEFSHDWIPPFQLNTISLG 446 (776)
Q Consensus 424 n~l~~~~~~~~~~~~~L~~L~l~ 446 (776)
+ ++......|..+.+|+.+++.
T Consensus 353 ~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 353 S-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp T-CCEECTTTBTTCTTCCEEEEE
T ss_pred c-ccEehHHHhhCCCCCCEEEEC
Confidence 4 444444555555555555443
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.19 E-value=8.7e-10 Score=119.10 Aligned_cols=127 Identities=10% Similarity=0.009 Sum_probs=63.3
Q ss_pred cccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccccEEE
Q 047152 538 LCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLVKILD 617 (776)
Q Consensus 538 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~ 617 (776)
.+..+..++.+.+..+... .....|..+..++.+....+.+. ...|..+.+|+ .+.
T Consensus 248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~--------------------~i~ 303 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLT--------------------EVK 303 (394)
T ss_dssp TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCC--------------------EEE
T ss_pred cccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccc--------------------ccc
Confidence 3444555555555554332 33444555555655555444321 22344444443 333
Q ss_pred ccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCC
Q 047152 618 LSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLS 691 (776)
Q Consensus 618 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 691 (776)
+..+ ++..-..+|.++++|+.+++..+ ++..-..+|.++++|+.+++..| +...-...|.++++|+.+++.
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 3322 33233445555666666666433 44333455556666666666555 444444556666666666554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=5.9e-12 Score=134.29 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=18.4
Q ss_pred CCCCCEEEccCCCCCC-----CchhhcccCCCcEEeccCCcCC
Q 047152 288 MVSLRYLDLSSNELRG-----IPKFLGNMCGLKILYLSGKELK 325 (776)
Q Consensus 288 l~~L~~L~L~~n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~ 325 (776)
.++|++|+|++|.+++ ++..+..+++|++|+|++|.++
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 3455555555555543 2233344455555555555544
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.94 E-value=1.5e-07 Score=101.42 Aligned_cols=135 Identities=9% Similarity=0.101 Sum_probs=77.0
Q ss_pred CCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCCcccccCCccccccCCCcEEecCCCcccccccccccc
Q 047152 534 SISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANNNFFGKIPNSMGFLHNIRSLSLYNRSQYEYKSTLGLV 613 (776)
Q Consensus 534 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~l~~L 613 (776)
....+|..+..|+.+.+.++..+ .-..+|.+++.|+.+.+. +.+.......|.++.+|+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~------------------- 314 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLK------------------- 314 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCC-------------------
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcC-------------------
Confidence 33456677777888877655443 445667777788887775 334444455666666664
Q ss_pred cEEEccCCCCccCCchhhhccccCCEEECcCCcccCcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCC
Q 047152 614 KILDLSSNKLGGGVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYN 693 (776)
Q Consensus 614 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 693 (776)
.+++..+ ++..-..+|.++++|+.+.+..+ ++..-...|.++++|+.+++.++.... ..+...+.|+.+.+..|
T Consensus 315 -~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 315 -SIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp -EEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred -EEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 4444432 44344556777777777777544 553445667777777777777765432 34555667777766655
Q ss_pred cc
Q 047152 694 NL 695 (776)
Q Consensus 694 ~l 695 (776)
.+
T Consensus 389 ~~ 390 (394)
T 4gt6_A 389 SI 390 (394)
T ss_dssp --
T ss_pred CE
Confidence 43
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=8.2e-10 Score=116.61 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=62.0
Q ss_pred CCcEEEEECCCCCCCCCCC---ceeccccccCCCCCCEEeCCCCCCCC--------CCCCccccCCCCCCEEecCCCCCC
Q 047152 82 TGHVNKLDLQPIGFDSFPL---RGKITPALLKLQHLTYLDLSRNNFSG--------SSIPEFLGSLGKLSYLGLSSAEFA 150 (776)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~l---~g~~~~~l~~l~~L~~L~Ls~n~l~~--------~~~p~~~~~l~~L~~L~Ls~n~l~ 150 (776)
..+|++|.+..++.+.... ...+..++.++++|+.|.+....... ..++..+..+++|+.|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3478888888743111000 00123456678899999887654321 014455567788888888776311
Q ss_pred CCCCccCCCCCCCCEEeccCCCCCCCCCchhhc--cCCCCcEEEcc
Q 047152 151 GPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLS--HLSSLIYLYLD 194 (776)
Q Consensus 151 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~--~l~~L~~L~Ls 194 (776)
.++. +. +++|++|++..+.+.. .....+. .+++|++|+|+
T Consensus 186 -~l~~-~~-~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 -SIGK-KP-RPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp -BCCS-CB-CTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEEE
T ss_pred -eecc-cc-CCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEEe
Confidence 2232 33 6777888777766532 2222332 56777777664
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.83 E-value=6.2e-08 Score=104.48 Aligned_cols=314 Identities=12% Similarity=0.094 Sum_probs=170.3
Q ss_pred ccccCCC-CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCC---CCCCCCccCCCCCCCCEEeccCCCCCCCCCchh
Q 047152 106 PALLKLQ-HLTYLDLSRNNFSGSSIPEFLGSLGKLSYLGLSSAE---FAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDW 181 (776)
Q Consensus 106 ~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 181 (776)
.+|.+++ .|+.+.+..+ ++.+ -..+|.++.+|+.+.+..|. ++..-..+|.++.+|+.+.+..+ +.. .....
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~-I~~~a 132 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE-IDSEA 132 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE-ECTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce-ehhhh
Confidence 4566664 4788887654 4433 34567788888888887653 44333456777788887776544 221 33346
Q ss_pred hccCCCCcEEEccCCCCCCcchhhHhhcCCCCCCEEEccCCCCCCCCchhhhcCCCCCCccEEEcCCCCCCCCchhhHhh
Q 047152 182 LSHLSSLIYLYLDLNDLSNFSNWVQLLSKLHSLTTLSLYSCDLPPIIPSSLLNLNSSNSLEVIDLTENNLTNSVYPWLFN 261 (776)
Q Consensus 182 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 261 (776)
|..+.+|+.+.+..+ +..+. ...+..+.+|+.+.+..+ +..+....|.. ..|+.+.+..+- .......+.+
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~--~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~----~~l~~i~ip~~~-~~i~~~af~~ 203 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVA--DGMFSYCYSLHTVTLPDS-VTAIEERAFTG----TALTQIHIPAKV-TRIGTNAFSE 203 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEECCTT-CCEECTTTTTT----CCCSEEEECTTC-CEECTTTTTT
T ss_pred hhhhcccccccccce-eeeec--ccceecccccccccccce-eeEeccccccc----cceeEEEECCcc-cccccchhhh
Confidence 777788888887643 22221 245677777887777654 33222333322 456666665432 1112223333
Q ss_pred cCCCCcCEEEccCCccccCcchh-------------hcCCCCCCEEEccCCCCCCC-chhhcccCCCcEEeccCCcCCCc
Q 047152 262 VSSSLVDRISLPSNQLQGSIPEA-------------FGRMVSLRYLDLSSNELRGI-PKFLGNMCGLKILYLSGKELKGQ 327 (776)
Q Consensus 262 ~~~~~L~~L~L~~n~l~~~~p~~-------------l~~l~~L~~L~L~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~ 327 (776)
+.. ++................ +.....+..+.+.. .++.+ ...|.++..|+.+.+..+.. ..
T Consensus 204 c~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I 279 (394)
T 4gt6_A 204 CFA--LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SI 279 (394)
T ss_dssp CTT--CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EE
T ss_pred ccc--cceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-ee
Confidence 444 444443333222110000 11112223333221 11111 23466677777777765432 23
Q ss_pred cchHHhhccCCCcCCCccEEEcccccccccCCC-ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCcccccccc
Q 047152 328 LSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN-LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVIS 406 (776)
Q Consensus 328 ~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 406 (776)
....|.+.. .|+.+.+.. .++..... |.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++ .+.
T Consensus 280 ~~~aF~~c~------~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~ 349 (394)
T 4gt6_A 280 GTGAFMNCP------ALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIP 349 (394)
T ss_dssp CTTTTTTCT------TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCC
T ss_pred cCccccccc------ccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEh
Confidence 334455544 788888753 34433333 778888888888754 55445667888888888888655 43 455
Q ss_pred HHhhhCCCCCcEEECCCCccceecCCCCCCCCCCcEEEccCcC
Q 047152 407 EALFSNLSRLAALDLADNSLTLEFSHDWIPPFQLNTISLGHCK 449 (776)
Q Consensus 407 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 449 (776)
...|.+|++|+.+++.++.... ..+.....|+.+.+..+.
T Consensus 350 ~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp GGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred HhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 5578888889888888876542 245566677777665543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=7.5e-08 Score=101.58 Aligned_cols=139 Identities=22% Similarity=0.213 Sum_probs=79.8
Q ss_pred cchhhcCCCCCCEEEccCCCCCCCchhhcccCCCcEEeccCCcCCCccchHHh--hccCCCcCCCccEEEccc--ccccc
Q 047152 281 IPEAFGRMVSLRYLDLSSNELRGIPKFLGNMCGLKILYLSGKELKGQLSEFIQ--DLSSGCTKNSLEWLHLSS--NEITG 356 (776)
Q Consensus 281 ~p~~l~~l~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~~~~~~~L~~L~L~~--n~l~~ 356 (776)
+...+..+++|+.|++++|.-..++. + .+++|++|++..+.+.......+. .++ +|++|+|+. |...+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp------~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLP------NLEKLVLYVGVEDYGF 235 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCT------TCCEEEEECBCGGGTC
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCC------CCcEEEEecccccccc
Confidence 44556667777777777662122333 3 267777777777776554444443 344 777777753 22111
Q ss_pred c--C----CCc--cCCCCCCEEeccCccccccchhccc---CCCCCcEEECCCccccccccHH---hhhCCCCCcEEECC
Q 047152 357 S--M----PNL--GEFSSLKQLNLENNLLNGTIHKSIG---QLFKLEMLKLNGNSLGGVISEA---LFSNLSRLAALDLA 422 (776)
Q Consensus 357 ~--~----~~l--~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls 422 (776)
. + +.+ ..+++|++|++++|.+.+..+..+. .+++|++|+|+.|.+.+..... .+.++++|+.|+++
T Consensus 236 ~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 1 0 111 3467788888877777654433332 4667788888777776532221 12345777777777
Q ss_pred CCccc
Q 047152 423 DNSLT 427 (776)
Q Consensus 423 ~n~l~ 427 (776)
+|.++
T Consensus 316 ~n~i~ 320 (362)
T 2ra8_A 316 YNYLS 320 (362)
T ss_dssp SBBCC
T ss_pred CCcCC
Confidence 77665
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.47 E-value=2.2e-05 Score=83.82 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=26.3
Q ss_pred cCEEEccCCccccCcchhhcCCCCCCEEEccCCCCCCCch-hhcccCCCcEEec
Q 047152 267 VDRISLPSNQLQGSIPEAFGRMVSLRYLDLSSNELRGIPK-FLGNMCGLKILYL 319 (776)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ip~-~l~~l~~L~~L~L 319 (776)
++.+.+.. .++.+-..+|.+|.+|+.+++..+ ++.|+. .|.++ +|+.+.+
T Consensus 48 i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~ 98 (379)
T 4h09_A 48 ISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTG 98 (379)
T ss_dssp CSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEE
T ss_pred CEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEEC
Confidence 56665543 344344556777777777777543 444432 33333 4444443
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.45 E-value=1.1e-05 Score=86.33 Aligned_cols=143 Identities=16% Similarity=0.164 Sum_probs=81.4
Q ss_pred chhhcCCCCCCEEEccCCCCCCC-chhhcccCCCcEEeccCCcCCCccchHHhhccCCCcCCCccEEEcccccccccCCC
Q 047152 282 PEAFGRMVSLRYLDLSSNELRGI-PKFLGNMCGLKILYLSGKELKGQLSEFIQDLSSGCTKNSLEWLHLSSNEITGSMPN 360 (776)
Q Consensus 282 p~~l~~l~~L~~L~L~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~L~~n~l~~~~~~ 360 (776)
...+..+.+|+.+.+..+ +..+ ...+.++..|+.+.+..+ ++......+.... +|+.+.+..+ ++.....
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~------~l~~i~l~~~-i~~i~~~ 280 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT------ALKTLNFYAK-VKTVPYL 280 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT------TCCEEEECCC-CSEECTT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee------hhcccccccc-ceecccc
Confidence 344556666776666543 3332 234556666777666544 3333344444444 6677766543 3222222
Q ss_pred -ccCCCCCCEEeccCccccccchhcccCCCCCcEEECCCccccccccHHhhhCCCCCcEEECCCCccceecCCCCCC
Q 047152 361 -LGEFSSLKQLNLENNLLNGTIHKSIGQLFKLEMLKLNGNSLGGVISEALFSNLSRLAALDLADNSLTLEFSHDWIP 436 (776)
Q Consensus 361 -l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 436 (776)
|..+++|+.+.+.++.++......|.++.+|+.+.+..+ ++ .+....|.++++|+.+.+..+ ++.....+|..
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 667777777777776666555566777777777777654 32 344446777777777777544 44344444433
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=2e-07 Score=88.55 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=28.1
Q ss_pred chhhcCCCCCCEEEccCC-CCCC-----CchhhcccCCCcEEeccCCcCCCc
Q 047152 282 PEAFGRMVSLRYLDLSSN-ELRG-----IPKFLGNMCGLKILYLSGKELKGQ 327 (776)
Q Consensus 282 p~~l~~l~~L~~L~L~~n-~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~ 327 (776)
...+...++|++|+|++| .+.. +...+...++|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~ 80 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP 80 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH
Confidence 344556667777777776 6654 334455556667777777666543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=2.4e-07 Score=87.98 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=29.2
Q ss_pred cCEEEccCCccccC----cchhhcCCCCCCEEEc--cCCCCCC-----CchhhcccCCCcEEeccCCcCC
Q 047152 267 VDRISLPSNQLQGS----IPEAFGRMVSLRYLDL--SSNELRG-----IPKFLGNMCGLKILYLSGKELK 325 (776)
Q Consensus 267 L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L--~~n~l~~-----ip~~l~~l~~L~~L~Ls~n~l~ 325 (776)
|++|+|++|.+... +...+...++|++|+| ++|.+.. +...+...++|++|++++|.+.
T Consensus 95 L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44444444444332 2334445555666666 5555554 2333444455555555555543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=3.8e-07 Score=91.11 Aligned_cols=66 Identities=26% Similarity=0.368 Sum_probs=34.8
Q ss_pred ccccCCEEECcCCcccC--cCcccccCcCCCCeeeCcCceeeecCCccCcCCC--CCCeeeCCCCcceecCC
Q 047152 633 DLVGLVALNLSRNNLTG--QITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLS--GLSVMDLSYNNLSGKIP 700 (776)
Q Consensus 633 ~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~g~iP 700 (776)
+++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. .|++|++++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 44555555555555554 2334444555555555555555543 2222222 56666666666665555
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=2e-07 Score=93.18 Aligned_cols=74 Identities=26% Similarity=0.303 Sum_probs=38.2
Q ss_pred cEEEccCCCCcc--CCchhhhccccCCEEECcCCcccCcCcccccCcC--CCCeeeCcCceeeecCCc-------cCcCC
Q 047152 614 KILDLSSNKLGG--GVPKEIMDLVGLVALNLSRNNLTGQITPKIGQLK--SLDFLDLSRNQFFGGIPS-------SLSQL 682 (776)
Q Consensus 614 ~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~-------~l~~l 682 (776)
+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+.+.+|. .+..+
T Consensus 173 ~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~ 250 (267)
T 3rw6_A 173 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERF 250 (267)
T ss_dssp CEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHC
T ss_pred CEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHC
Confidence 445555555554 3344455555566666666665532 2233333 566666666666554442 24455
Q ss_pred CCCCeee
Q 047152 683 SGLSVMD 689 (776)
Q Consensus 683 ~~L~~L~ 689 (776)
++|+.||
T Consensus 251 P~L~~LD 257 (267)
T 3rw6_A 251 PKLLRLD 257 (267)
T ss_dssp TTCCEES
T ss_pred cccCeEC
Confidence 6666554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=3.3e-06 Score=78.02 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=40.0
Q ss_pred CCCEEecCCCCCCCCCCccCCCCCCCCEEeccCCCCCCCCCchhhccC----CCCcEEEccCCC-CCCcchhhHhhcCCC
Q 047152 138 KLSYLGLSSAEFAGPIPHQLGNLSRLQFLDLSFNNLFSGENLDWLSHL----SSLIYLYLDLND-LSNFSNWVQLLSKLH 212 (776)
Q Consensus 138 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~l~~l~ 212 (776)
+|++||+++|.++..--..+..+++|++|+|++|...++.....++.+ ++|++|++++|. +++ .-...+.+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhcCC
Confidence 455555555555444334445555555555555542111223334332 245555555543 433 1223445555
Q ss_pred CCCEEEccCCC
Q 047152 213 SLTTLSLYSCD 223 (776)
Q Consensus 213 ~L~~L~L~~n~ 223 (776)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 66666665553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=1.7e-05 Score=73.22 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=61.1
Q ss_pred CCCCCEEeccCCCCCCCCCchhhccCCCCcEEEccCCC-CCCcchhhHhhcCC----CCCCEEEccCCC-CCCCCchhhh
Q 047152 160 LSRLQFLDLSFNNLFSGENLDWLSHLSSLIYLYLDLND-LSNFSNWVQLLSKL----HSLTTLSLYSCD-LPPIIPSSLL 233 (776)
Q Consensus 160 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~ 233 (776)
-.+|++||++++.++. .....+.++++|++|+|++|. +++ .-...++.+ ++|++|+|++|. ++..--..+.
T Consensus 60 ~~~L~~LDLs~~~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD--~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMS-IGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCCCCG-GGGGGGTTCSCCCEEEEESCTTCCH--HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred CceEeEEeCcCCCccH-HHHHHhcCCCCCCEEEeCCCCccCH--HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 3579999999999765 555677889999999999985 555 233445554 478888888885 5554444455
Q ss_pred cCCCCCCccEEEcCCCC
Q 047152 234 NLNSSNSLEVIDLTENN 250 (776)
Q Consensus 234 ~l~~~~~L~~L~Ls~n~ 250 (776)
.+ ++|++|+++++.
T Consensus 137 ~~---~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HF---RNLKYLFLSDLP 150 (176)
T ss_dssp GC---TTCCEEEEESCT
T ss_pred cC---CCCCEEECCCCC
Confidence 55 788888888775
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.17 E-value=0.00041 Score=65.28 Aligned_cols=40 Identities=8% Similarity=0.105 Sum_probs=18.6
Q ss_pred cCCCCCCEEEccCC-CCCC-----CchhhcccCCCcEEeccCCcCC
Q 047152 286 GRMVSLRYLDLSSN-ELRG-----IPKFLGNMCGLKILYLSGKELK 325 (776)
Q Consensus 286 ~~l~~L~~L~L~~n-~l~~-----ip~~l~~l~~L~~L~Ls~n~l~ 325 (776)
.+-+.|++|+|++| .+.. +-+.+..-+.|+.|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 33445555555543 4432 2233444445555555555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.10 E-value=0.00053 Score=64.51 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=17.8
Q ss_pred cCCCCcEEEccCC-CCCCc--chhhHhhcCCCCCCEEEccCCCC
Q 047152 184 HLSSLIYLYLDLN-DLSNF--SNWVQLLSKLHSLTTLSLYSCDL 224 (776)
Q Consensus 184 ~l~~L~~L~Ls~n-~l~~~--~~~~~~l~~l~~L~~L~L~~n~l 224 (776)
+-+.|++|+|++| .+... ..+.+.+..-+.|++|+|++|++
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i 82 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI 82 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence 3445555555553 44321 22333444444444444444444
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.04 E-value=0.00075 Score=59.29 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=44.2
Q ss_pred CEEECcCCccc-CcCcccccCcCCCCeeeCcCceeeecCCccCcCCCCCCeeeCCCCcceecCC
Q 047152 638 VALNLSRNNLT-GQITPKIGQLKSLDFLDLSRNQFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP 700 (776)
Q Consensus 638 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 700 (776)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|++.+.+-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 36677777775 24554432 467888888888886666777888889999999999987643
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.30 E-value=0.0069 Score=53.03 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=33.3
Q ss_pred CeEeccCCccc-ccCCC-CCCCCcEEEccCCccccCCCccccCCCCccEEECcCCccc
Q 047152 501 PGIDISSNHFE-GPIPP-LPSNATSLNLSKNKFSGSISFLCSLSNRLIYLDLSNNLLS 556 (776)
Q Consensus 501 ~~l~l~~n~l~-g~~p~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 556 (776)
..++.+++.++ ..+|. .+.++++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 45566666665 23443 3445666666666666666666666666666666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.76 E-value=65 Score=25.88 Aligned_cols=47 Identities=13% Similarity=0.033 Sum_probs=29.8
Q ss_pred ccccCCCccccCCCCccEEECcCCcccccCChhhhCCCCCcEEeccCC
Q 047152 530 KFSGSISFLCSLSNRLIYLDLSNNLLSGKLPDCWFQFDSLVILNLANN 577 (776)
Q Consensus 530 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 577 (776)
.++.+-...|.+|.+|+.+.+-.+ ++..-..+|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444556777777777777654 33344566777777777777653
Done!