BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047153
(100 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356532014|ref|XP_003534569.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/108 (79%), Positives = 90/108 (83%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
ME DR DGR PNQLRPLAC CSILHRAHGSASW+QG+TKVLAA KNENPEK
Sbjct: 1 METDRPDGRTPNQLRPLACSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEVIWK KTGQIGK EKEYEMILKRTL+SICI TI PNTTTSVI+QV
Sbjct: 61 SIEVIWKPKTGQIGKLEKEYEMILKRTLESICIRTIYPNTTTSVIVQV 108
>gi|449511723|ref|XP_004164036.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 91/108 (84%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
MEIDR DGR PNQLRPLAC C++L+RAHGSASWSQGDTKVLAA KNENPEK
Sbjct: 1 MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEVIWK KTGQIGK E+E EMILKRTLQSICILT NPNTTTS+I+QV
Sbjct: 61 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQV 108
>gi|449465139|ref|XP_004150286.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 91/108 (84%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
MEIDR DGR PNQLRPLAC C++L+RAHGSASWSQGDTKVLAA KNENPEK
Sbjct: 1 MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEVIWK KTGQIGK E+E EMILKRTLQSICILT NPNTTTS+I+QV
Sbjct: 61 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQV 108
>gi|356565547|ref|XP_003551001.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease RRP46
homolog [Glycine max]
Length = 244
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 89/108 (82%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
ME DR DGR PNQLRPLA CSILHRAHGSASW+QG+TKVLAA KNENPEK
Sbjct: 1 METDRPDGRTPNQLRPLAYSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEVIWK KTGQIGK EKEYEMILKRTL+SICI TI PNTTTSVI+QV
Sbjct: 61 SIEVIWKPKTGQIGKMEKEYEMILKRTLESICIRTIYPNTTTSVIVQV 108
>gi|356568370|ref|XP_003552384.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 89/108 (82%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
ME DR DGR PNQLRPL C CSILHR+HGSASW+QG+TKVLAA K+ENPEK
Sbjct: 1 METDRPDGRTPNQLRPLVCSCSILHRSHGSASWAQGETKVLAAVYGPKAGTKKSENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEVIWK KTGQIGK EKEYEMILKRTL+SICI TI PNTTTSVI+QV
Sbjct: 61 SIEVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTSVIVQV 108
>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
Length = 242
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 88/108 (81%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
MEIDR DGR PNQLRPLAC +ILHR HGSASWSQGDTKVLAA KNEN EK
Sbjct: 1 MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
EVIWK KTGQIGK EKEYEMI+KRT+QSIC+LT+NPNTTTSVIIQV
Sbjct: 61 CFEVIWKPKTGQIGKVEKEYEMIMKRTIQSICVLTVNPNTTTSVIIQV 108
>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 91/108 (84%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
ME DR DGR+P+QLRPL+C ++LHRAHGSASWSQGDTKVLAA KNENPEK
Sbjct: 1 MESDRDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
IEVIWK KTGQIGK EKE+EMILKRTLQSICILT+NPNTTTS+I+QV
Sbjct: 61 CIEVIWKPKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQV 108
>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
Length = 211
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 90/108 (83%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
M+IDR DGR PNQLRPLAC ++L+RAHGSASW QGDTKVLAA KNENPEK
Sbjct: 1 MDIDRDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAVYGPKPGTKKNENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
IEVIWK KTGQIGK EKEYEMILKRTLQ+IC+LTINPNTTTSVI+QV
Sbjct: 61 CIEVIWKPKTGQIGKVEKEYEMILKRTLQTICVLTINPNTTTSVIVQV 108
>gi|15231368|ref|NP_190207.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314404|ref|NP_001030817.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314427|ref|NP_001030818.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314448|ref|NP_001030819.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|145332769|ref|NP_001078250.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|334185757|ref|NP_001190019.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana]
gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana]
gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana]
gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana]
gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana]
gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana]
Length = 239
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 88/108 (81%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
MEIDR DGR PNQLRPLAC +ILHR HGSASWSQGDTKVLAA KNEN EK
Sbjct: 1 MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
EVIWK K+GQIGK EKEYEMILKRT+QSIC+LT+NPNTTTSVIIQV
Sbjct: 61 CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQV 108
>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/107 (74%), Positives = 90/107 (84%), Gaps = 9/107 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
MEIDR DGR+P+QLRPL+C ++LHRAHGSASWSQGDTKV AA KNENPEK
Sbjct: 1 MEIDRDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVSAAVYGPKAGTKKNENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
+EVIWK KTGQIGK E+EYEMILKRTLQSICILT+NPNTTTS+I+Q
Sbjct: 61 CVEVIWKPKTGQIGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQ 107
>gi|388511449|gb|AFK43786.1| unknown [Lotus japonicus]
Length = 243
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/108 (74%), Positives = 88/108 (81%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
MEIDRADGR+PNQLRPLAC S+LHRAHGSASW+QG+TKV AA KNENPEK
Sbjct: 1 MEIDRADGRSPNQLRPLACSRSVLHRAHGSASWAQGETKVFAAVYGPKAGTKKNENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEV WK TGQIG+ EK YEMILKRTL+SICI +I PNTTTSVI+QV
Sbjct: 61 SIEVTWKPNTGQIGQVEKGYEMILKRTLESICIRSIYPNTTTSVIVQV 108
>gi|357507241|ref|XP_003623909.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
gi|355498924|gb|AES80127.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
Length = 243
Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/108 (71%), Positives = 89/108 (82%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
MEIDR DGR+PNQLRPLAC S+LHRAHGSA+W+QG+TKVLAA KNENPEK
Sbjct: 1 MEIDRPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEVIWK TG +G+ ++EYEMILK+TL+SICI TI PNTTTSVI+QV
Sbjct: 61 SIEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSVIVQV 108
>gi|225429944|ref|XP_002281273.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Vitis
vinifera]
Length = 245
Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 88/108 (81%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
MEI R DGR NQLRPLAC +IL+RAHGSASWSQGDTKVLAA KNENPEK
Sbjct: 3 MEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 62
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
IEV+WK KTGQIGK EKEYE+ILKRTL+SIC+L INPNTTTS+IIQV
Sbjct: 63 CIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQV 110
>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera]
Length = 243
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 88/108 (81%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
MEI R DGR NQLRPLAC +IL+RAHGSASWSQGDTKVLAA KNENPEK
Sbjct: 1 MEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
IEV+WK KTGQIGK EKEYE+ILKRTL+SIC+L INPNTTTS+IIQV
Sbjct: 61 CIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQV 108
>gi|226504202|ref|NP_001146469.1| uncharacterized protein LOC100280057 [Zea mays]
gi|219887423|gb|ACL54086.1| unknown [Zea mays]
gi|413932389|gb|AFW66940.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 84/104 (80%), Gaps = 9/104 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
RADGRNPNQLRP C + LHRAHGSA W+QGDT VLAA K ENPEK SIEV
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEV 66
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+WK KTGQIG+QE+EYEM LKRTLQSIC+LT++PNTTTSV++QV
Sbjct: 67 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQV 110
>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3
exoribonuclease [Medicago truncatula]
Length = 241
Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 87/106 (82%), Gaps = 9/106 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
MEIDR DGR+PNQLRPLAC S+LHRAHGSA+W+QG+TKVLAA KNENPEK
Sbjct: 1 MEIDRPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVII 97
SIEVIWK TG +G+ ++EYEMILK+TL+SICI TI PNTTTSVI+
Sbjct: 61 SIEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSVIV 106
>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
Length = 239
Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 85/104 (81%), Gaps = 9/104 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
RADGRNPNQLRP +C + LHRAHGSA W+QGDT VLAA K ENPEK SIEV
Sbjct: 6 RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEV 65
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+WK KTGQIG+QE+EYEM LKRTLQSIC+LT++PNTTTSV++QV
Sbjct: 66 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQV 109
>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 84/104 (80%), Gaps = 9/104 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
RADGRNPNQLRP C + LHRAHGSA W+QGDT VLAA K ENPEK SIEV
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEV 66
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+WK KTGQIG+QE+EYEM LKRTLQSIC+LT++PNTTTSV++QV
Sbjct: 67 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQV 110
>gi|413932390|gb|AFW66941.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
gi|413932391|gb|AFW66942.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
Length = 122
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 84/104 (80%), Gaps = 9/104 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
RADGRNPNQLRP C + LHRAHGSA W+QGDT VLAA K ENPEK SIEV
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEV 66
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+WK KTGQIG+QE+EYEM LKRTLQSIC+LT++PNTTTSV++QV
Sbjct: 67 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQV 110
>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
Length = 246
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/108 (71%), Positives = 85/108 (78%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
ME RADGRNPNQLRP +C + L RAHGSA W+QGDT VLAA K ENPEK
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEV+WK TGQIGKQEKEYEM LKRTLQSIC+LT++PNTTTSVI+QV
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108
>gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa Japonica Group]
Length = 248
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/108 (71%), Positives = 85/108 (78%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
ME RADGRNPNQLRP +C + L RAHGSA W+QGDT VLAA K ENPEK
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEV+WK TGQIGKQEKEYEM LKRTLQSIC+LT++PNTTTSVI+QV
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108
>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|75243278|sp|Q84T68.2|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46; Short=oRrp46
gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group]
gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 238
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/108 (71%), Positives = 85/108 (78%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
ME RADGRNPNQLRP +C + L RAHGSA W+QGDT VLAA K ENPEK
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEV+WK TGQIGKQEKEYEM LKRTLQSIC+LT++PNTTTSVI+QV
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108
>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
Length = 238
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/108 (71%), Positives = 85/108 (78%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
ME RADGRNPNQLRP +C + L RAHGSA W+QGDT VLAA K ENPEK
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEV+WK TGQIGKQEKEYEM LKRTLQSIC+LT++PNTTTSVI+QV
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108
>gi|224031563|gb|ACN34857.1| unknown [Zea mays]
gi|413932392|gb|AFW66943.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
Length = 149
Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 84/105 (80%), Gaps = 9/105 (8%)
Query: 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIE 54
RADGRNPNQLRP C + LHRAHGSA W+QGDT VLAA K ENPEK SIE
Sbjct: 6 SRADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIE 65
Query: 55 VIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
V+WK KTGQIG+QE+EYEM LKRTLQSIC+LT++PNTTTSV++QV
Sbjct: 66 VVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQV 110
>gi|356554181|ref|XP_003545427.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 237
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 87/110 (79%), Gaps = 11/110 (10%)
Query: 1 MEIDRADGRNPNQLRPLACYCS--ILHRAHGSASWSQGDTKVLAA---------KNENPE 49
ME DR D + PNQLRPLAC CS ILHR+HGSASW+Q +TKVLAA KNENP+
Sbjct: 1 METDRPDSQTPNQLRPLACSCSCSILHRSHGSASWAQRETKVLAAVYGPKAGTKKNENPK 60
Query: 50 KVSIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K SI+VIWK KTGQIGK EKEYEMILKRTL+SICI TI PNTTT VI+Q+
Sbjct: 61 KASIKVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTLVIVQI 110
>gi|357117089|ref|XP_003560307.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Brachypodium
distachyon]
Length = 238
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 81/108 (75%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
ME R DGRN NQLRP C + L RAHGSA WSQGDT VLAA K ENPEK
Sbjct: 1 MEGSRGDGRNANQLRPFTCARNPLDRAHGSARWSQGDTVVLAAVYGPRPGTRKGENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEV+WK KTGQ GKQEK YEM LKRTLQSIC+LT++PNTTTSVI+QV
Sbjct: 61 SIEVVWKPKTGQSGKQEKGYEMTLKRTLQSICLLTVHPNTTTSVILQV 108
>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp.
vulgare]
Length = 240
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 76/97 (78%), Gaps = 9/97 (9%)
Query: 12 NQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTG 62
NQLR +C + L RAHGSA W+QGDT VLAA K ENPEK S+EV+WK KTG
Sbjct: 14 NQLRAYSCTRNPLERAHGSARWAQGDTVVLAAVYGPRPGTRKGENPEKASLEVVWKPKTG 73
Query: 63 QIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
QIG+QEKEYEM LKRTLQSIC+LT++PNTTTS+I+QV
Sbjct: 74 QIGRQEKEYEMTLKRTLQSICLLTVHPNTTTSIILQV 110
>gi|413942153|gb|AFW74802.1| hypothetical protein ZEAMMB73_831356 [Zea mays]
Length = 421
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 59/131 (45%), Positives = 74/131 (56%), Gaps = 37/131 (28%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
RADG+NPNQLR C ++LHRAHG A W+QG VLA + PEK SIE
Sbjct: 7 RADGQNPNQLRLFTCTGNLLHRAHGCARWAQGGIVVLATVYGPKPGTVRGRTPEKASIEA 66
Query: 56 IWKSKTGQI----------------------------GKQEKEYEMILKRTLQSICILTI 87
+WK +TGQI G+Q++EYEM LKRTLQSIC+LT+
Sbjct: 67 VWKPRTGQIDTPLFPSSSFCPTAVRVTGSLKWRVVFVGRQDREYEMTLKRTLQSICLLTV 126
Query: 88 NPNTTTSVIIQ 98
+ N TTSV++Q
Sbjct: 127 HANATTSVVLQ 137
>gi|413945995|gb|AFW78644.1| hypothetical protein ZEAMMB73_813724 [Zea mays]
Length = 548
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 74/131 (56%), Gaps = 37/131 (28%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
RADG+NPNQLR C ++LHRAHG W+QG +L+A + PEK SIE
Sbjct: 6 RADGQNPNQLRLFTCIGNLLHRAHGCTRWAQGGIVMLSAVYGPKPGTVRGRTPEKASIEA 65
Query: 56 IWKSKTGQI----------------------------GKQEKEYEMILKRTLQSICILTI 87
+WK +TGQI G+QE+EYEM LKR LQSIC+LT+
Sbjct: 66 VWKPRTGQIDTPLFPSSSFCPTAVRVIGSLKWRVVFAGRQEREYEMTLKRMLQSICLLTV 125
Query: 88 NPNTTTSVIIQ 98
+ NTTTSV++Q
Sbjct: 126 HANTTTSVVLQ 136
>gi|297825843|ref|XP_002880804.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326643|gb|EFH57063.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 140
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 63/83 (75%), Gaps = 9/83 (10%)
Query: 26 RAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYEMILK 76
R+ G + +GDTKVLAA KNEN EK EVIWK KTGQIGK EKEYEMILK
Sbjct: 20 RSTGDRRYEKGDTKVLAAVYGPKAGTKKNENDEKACFEVIWKPKTGQIGKVEKEYEMILK 79
Query: 77 RTLQSICILTINPNTTTSVIIQV 99
RT+QSIC+LT+NPNTTTSVIIQV
Sbjct: 80 RTMQSICVLTVNPNTTTSVIIQV 102
>gi|297847232|ref|XP_002891497.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
lyrata]
gi|297337339|gb|EFH67756.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
lyrata]
Length = 159
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 55/73 (75%), Gaps = 9/73 (12%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
+EIDR DGR P+QLRPLAC +ILHR HGSASWSQGDTKVLAA KNENPEK
Sbjct: 24 IEIDREDGRTPDQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 83
Query: 52 SIEVIWKSKTGQI 64
EVIWK K+GQI
Sbjct: 84 CFEVIWKPKSGQI 96
>gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673333|gb|EDQ59858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 256
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 73/105 (69%), Gaps = 9/105 (8%)
Query: 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIE 54
+RADGR+ +QLRPL+ +L RAHGSA+WSQ +T VLAA K EN E+ IE
Sbjct: 18 ERADGRSASQLRPLSLSRGLLTRAHGSATWSQENTTVLAAVYGPKPAAMKKENAERAIIE 77
Query: 55 VIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
V+W++K+G G EK+ E++++R+L+ I + ++PNT SVI+QV
Sbjct: 78 VVWRAKSGLSGSYEKDAEVVVRRSLEYIILTALHPNTAISVILQV 122
>gi|118484971|gb|ABK94350.1| unknown [Populus trichocarpa]
Length = 53
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
MEIDR DGR+P+QLRPL+C ++LHRAHGSASWSQGDTKVLAA
Sbjct: 1 MEIDRDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVLAA 43
>gi|302841757|ref|XP_002952423.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
nagariensis]
gi|300262359|gb|EFJ46566.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
nagariensis]
Length = 247
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 9/104 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
RA GR P QLR L C S+L RA GSA W+Q + VLAA + E+ E+ +EV
Sbjct: 15 RARGRLPTQLRTLVCERSVLDRADGSAKWTQEGSSVLAAVYGPRQAKPQKEDAEQAVVEV 74
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
++K + G G +++ +E+ ++ L+ + L + P T+ V++QV
Sbjct: 75 VYKPRAGLQGHEDRTFELEVRGILEGVIPLGMYPRTSIMVVLQV 118
>gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864]
Length = 227
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 9/107 (8%)
Query: 3 IDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSI 53
+ RADGR PNQLR L+ ++L RA GS+ +SQ DT L A E +K ++
Sbjct: 2 VTRADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSALTAVYGPAEVKSSKELLDKATV 61
Query: 54 EVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ +++ KTG G + E IL++ L+ + T NP T+ +VI+QV
Sbjct: 62 QTVFRPKTGLAGVDDHVCEAILRQALEPVIQRTANPRTSITVIVQVM 108
>gi|301095816|ref|XP_002897007.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108436|gb|EEY66488.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 171
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 3 IDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVS 52
+ R DGR N+LRP A L RA GSA S G + VLAA + EN +K +
Sbjct: 6 LQRQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKAT 65
Query: 53 IEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
++V +K + G + +EKEYE I+++T + + P S+++QV
Sbjct: 66 LDVCFKLEKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQV 112
>gi|363746058|ref|XP_003643513.1| PREDICTED: exosome complex component RRP46-like, partial [Gallus
gallus]
Length = 173
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 9/96 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LRP +C +L R GSA++ QGDT VLA E+P+ ++EV+ + K G
Sbjct: 12 LRPFSCEQGLLSRPDGSATFVQGDTSVLAGLYGPAEVKGSRESPDGATVEVLLRPKVGLP 71
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
G E+ E +L+RT +++ + +++P T+ +V++QV
Sbjct: 72 GVAERSREQLLRRTFEAVLLGSLHPRTSITVVLQVL 107
>gi|297822455|ref|XP_002879110.1| hypothetical protein ARALYDRAFT_320572 [Arabidopsis lyrata subsp.
lyrata]
gi|297324949|gb|EFH55369.1| hypothetical protein ARALYDRAFT_320572 [Arabidopsis lyrata subsp.
lyrata]
Length = 128
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 51/89 (57%), Gaps = 25/89 (28%)
Query: 36 GDTKVLAA---------KNENPEKVSIEVIWK-------------SKTGQ---IGKQEKE 70
GDTKVL A KNE EK EVIW S+ G + K E+E
Sbjct: 2 GDTKVLTAQYEPKAGTKKNETAEKTCFEVIWNKPDRLVIVNAFSFSEGGLFYCLRKVERE 61
Query: 71 YEMILKRTLQSICILTINPNTTTSVIIQV 99
YE ILKRTLQSIC+LT+ PNTTTSVIIQV
Sbjct: 62 YETILKRTLQSICVLTVVPNTTTSVIIQV 90
>gi|298710388|emb|CBJ25452.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 230
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEK 50
ME R DGR NQ+RPLA IL+RA GSA + QG+T VLAA + E E
Sbjct: 1 MEETRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEG 60
Query: 51 VSIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNT 91
+++V +K ++G + E E +L+R+L+ + + + P T
Sbjct: 61 ATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRT 101
>gi|297809689|ref|XP_002872728.1| hypothetical protein ARALYDRAFT_490148 [Arabidopsis lyrata subsp.
lyrata]
gi|297318565|gb|EFH48987.1| hypothetical protein ARALYDRAFT_490148 [Arabidopsis lyrata subsp.
lyrata]
Length = 132
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 13/93 (13%)
Query: 20 YCSILHRAHGSASW-SQGDTKVLAAK--------NENPEKVSIEVIWKSKTGQIG----K 66
+ S L+ H + S+ GDTKVLAA+ + P+++ I + +G + K
Sbjct: 2 FLSFLNGIHWTLSFICSGDTKVLAAQYGLKASYGSHKPDRLVIVNAFSFSSGGVFCCLRK 61
Query: 67 QEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
E+EYE ILKRTLQ+IC+LT+ PNTTTSVIIQV
Sbjct: 62 VEREYETILKRTLQNICVLTVVPNTTTSVIIQV 94
>gi|15225666|ref|NP_178726.1| uncharacterized protein [Arabidopsis thaliana]
gi|3805760|gb|AAC69116.1| unknown protein [Arabidopsis thaliana]
gi|330250939|gb|AEC06033.1| uncharacterized protein [Arabidopsis thaliana]
Length = 150
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 59/107 (55%), Gaps = 27/107 (25%)
Query: 20 YCSILHRAHGSASW-SQGDTKVLAA---------KNENPEK--------------VSIEV 55
+ S L+ HG+ S+ DTKVL+A KNEN EK V +
Sbjct: 6 FLSFLNGIHGTLSFIFSEDTKVLSAQYGPKARTKKNENAEKACLKSYGSLKPDRLVIVNA 65
Query: 56 IWKSKTG---QIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
S+ G ++ K EKEYE ILKRTLQSIC+L + PNTTTSVIIQV
Sbjct: 66 FSFSERGLFCRLRKVEKEYETILKRTLQSICVLRVVPNTTTSVIIQV 112
>gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]
Length = 329
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 10/108 (9%)
Query: 3 IDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------KNENPEKVS--- 52
I R D R NQ+RP+ ++L++A GSA +SQG + VLAA K EK+S
Sbjct: 83 IKRDDTRLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTARKEKISKSV 142
Query: 53 IEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
++V + TG +KE EM+++ ++SI + ++P T +VI+QV+
Sbjct: 143 VDVSFTPATGNTTYFDKEREMLVRNAVESIILTLLHPRTQINVIVQVY 190
>gi|330791335|ref|XP_003283749.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
gi|325086372|gb|EGC39763.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
Length = 233
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKV 51
E R +GR QLR + S+L++A GSA +SQ T VLAA + E K
Sbjct: 6 EFRRLNGRTQGQLRSMESEQSLLNKADGSAKFSQNKTSVLAAVYGPIEVNSARKEKILKS 65
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+EV + G +KE E+++K ++S+ + T++P T SVIIQV+
Sbjct: 66 YVEVTFTPALGNTTYLDKEKELLVKNAVESVILTTLHPRTQVSVIIQVY 114
>gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500]
Length = 233
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 9/105 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R D RN NQ+R + ++L++A GSA +S ++ VLAA + E K ++EV
Sbjct: 3 RIDKRNNNQIRSIESELALLNKADGSAKFSLDNSSVLAAIYGPVEVNPRKEKISKATVEV 62
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
++ +G Q KE E +++ ++S+ + ++P T S+IIQV+
Sbjct: 63 VFTPDSGNQNYQTKEQESLIRNAIESVIMTMLHPRTLISIIIQVY 107
>gi|348677627|gb|EGZ17444.1| hypothetical protein PHYSODRAFT_499334 [Phytophthora sojae]
Length = 170
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR N+LRP A L RA GSA S G + VLA+ + E +K +++
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLASVYGPGQARNWRAEKTDKATLD 67
Query: 55 VIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
V +K + G +E+EYE I++ T + + P S+++QV
Sbjct: 68 VCFKLEKGITTSKEREYEQIIRETFTPVVLTDSFPRAVISIVVQV 112
>gi|440796320|gb|ELR17429.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 236
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
ME+ R+ GR NQLR + +L++ GSA ++ G + V+ A ++E ++
Sbjct: 1 MEVKRSGGRTNNQLRAVTSELGLLNKPDGSAKYTAGKSAVVVAVYGPIEVKHRDEILDRA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+I+V W +G G +E+E EMI+ +Q+ I T++P T +++Q+
Sbjct: 61 TIKVHWSPSSGTGGPEEREKEMIVANVVQNAIIATLHPRTLIEIVVQM 108
>gi|328771377|gb|EGF81417.1| hypothetical protein BATDEDRAFT_23824 [Batrachochytrium
dendrobatidis JAM81]
Length = 217
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R D R+ QLR + C +L RA GSA ++ G + VL + ++E + I+V
Sbjct: 18 RPDKRSVTQLRTMGCVVGMLSRADGSARFTLGKSSVLCSVYGPTASRPRDEKLDHAHIQV 77
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
++ +G G QE+ YE +++ +++I + ++P TT + +QV
Sbjct: 78 VFSPVSGISGTQERTYEHFIRQVVEAIVLSALHPRTTIQITLQVL 122
>gi|297815448|ref|XP_002875607.1| hypothetical protein ARALYDRAFT_484800 [Arabidopsis lyrata subsp.
lyrata]
gi|297321445|gb|EFH51866.1| hypothetical protein ARALYDRAFT_484800 [Arabidopsis lyrata subsp.
lyrata]
Length = 127
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 51/89 (57%), Gaps = 26/89 (29%)
Query: 37 DTKVLAAK---------NENPEKVSIEV--------------IWKSKTGQ---IGKQEKE 70
DTKV+AA+ NEN EK EV + SK G + K E+E
Sbjct: 20 DTKVIAAEYRPKAGTKENENAEKACFEVYGNLKPDRLVIVNALTCSKGGLFCCLRKVERE 79
Query: 71 YEMILKRTLQSICILTINPNTTTSVIIQV 99
YE ILKRTLQSIC+LT+ PNTTTSVIIQV
Sbjct: 80 YETILKRTLQSICVLTVVPNTTTSVIIQV 108
>gi|350538705|ref|NP_001232110.1| putative exosome component 5 [Taeniopygia guttata]
gi|197127157|gb|ACH43655.1| putative exosome component 5 [Taeniopygia guttata]
Length = 224
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 11/103 (10%)
Query: 7 DGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIW 57
DGR +LR +C +L R GSA++ QGDT VLA E P++ +++V+
Sbjct: 12 DGRC--RLRRFSCELGLLSRPDGSAAFLQGDTSVLAGLYGPAEAKISKELPDRAALDVLL 69
Query: 58 KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ K G G E+ E +L++T +++ + ++P T S+++QV
Sbjct: 70 RPKVGLPGVLERSREQLLQQTCEAVVLGVLHPRTAISLVLQVL 112
>gi|325182492|emb|CCA16947.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 251
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA----------AKNENPEKVSIE 54
R DGRN N+LR ++ LHRA GS++ + GDT VL A+NE +K +I+
Sbjct: 6 RDDGRNCNELRQISSEQGTLHRADGSSNLTFGDTTVLVAVYGPGQAKIARNELVDKAAID 65
Query: 55 VIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
V + G +EKE E+I++R + I P T S++IQ+
Sbjct: 66 VCVRLNQGIAAAKEKEMELIVRRLYEPIIQRQEFPRTVISIVIQI 110
>gi|219130014|ref|XP_002185170.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403349|gb|EEC43302.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 140
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 3 IDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSI 53
+DRADGR + LRPL+C LH A GSA W G T+VLAA +K I
Sbjct: 1 MDRADGRLASTLRPLSCELGTLHNADGSALWKSGSTQVLAAVHGPVAPRQPQHETQKAKI 60
Query: 54 EVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+I KS T + E+E+E + + L + + P + +++Q+
Sbjct: 61 SIIIKSGT-TVNTLEREWEAFITKALTACLVTEQYPRSVIQIVLQI 105
>gi|426242933|ref|XP_004015323.1| PREDICTED: exosome complex component RRP46 [Ovis aries]
Length = 235
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
KTG G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 82 PKTGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQV 122
>gi|149722162|ref|XP_001500390.1| PREDICTED: exosome complex component RRP46-like [Equus caballus]
Length = 235
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 122
>gi|355686801|gb|AER98191.1| exosome component 5 [Mustela putorius furo]
Length = 236
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P+ LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 24 RGPSCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 83
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 84 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 124
>gi|327276285|ref|XP_003222900.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 1 [Anolis
carolinensis]
Length = 223
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVS 52
E + D + LR + C +L R GSASW QGDT VLA E +K +
Sbjct: 4 EQKKCDSGDLPSLRRIVCEQGLLSRPDGSASWMQGDTSVLAGVYGPSEVKVSKEIYDKAT 63
Query: 53 IEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+EV+ + K G G E+ E ++K+T +++ + T++P ++ ++++QV
Sbjct: 64 LEVMLRPKVGLPGVYERSREQMIKKTCEAVVLGTLHPRSSITIVLQV 110
>gi|297277133|ref|XP_001102687.2| PREDICTED: exosome complex exonuclease RRP46 [Macaca mulatta]
Length = 277
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 64 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 123
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 124 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 164
>gi|14043511|gb|AAH07742.1| Exosome component 5 [Homo sapiens]
gi|78394993|gb|AAI07697.1| Exosome component 5 [Homo sapiens]
gi|119577442|gb|EAW57038.1| exosome component 5 [Homo sapiens]
gi|325463845|gb|ADZ15693.1| exosome component 5 [synthetic construct]
Length = 235
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 122
>gi|402905661|ref|XP_003915633.1| PREDICTED: exosome complex component RRP46 [Papio anubis]
Length = 260
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 47 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 106
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 107 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 147
>gi|122920910|pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 237
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 24 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 83
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 84 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 124
>gi|114677471|ref|XP_001152170.1| PREDICTED: exosome complex component RRP46 isoform 2 [Pan
troglodytes]
gi|397482601|ref|XP_003812509.1| PREDICTED: exosome complex component RRP46 [Pan paniscus]
gi|410210198|gb|JAA02318.1| exosome component 5 [Pan troglodytes]
gi|410248686|gb|JAA12310.1| exosome component 5 [Pan troglodytes]
gi|410287660|gb|JAA22430.1| exosome component 5 [Pan troglodytes]
Length = 235
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 122
>gi|47174864|ref|NP_064543.3| exosome complex component RRP46 [Homo sapiens]
gi|14285757|sp|Q9NQT4.1|EXOS5_HUMAN RecName: Full=Exosome complex component RRP46; AltName:
Full=Chronic myelogenous leukemia tumor antigen 28;
AltName: Full=Exosome component 5; AltName:
Full=Ribosomal RNA-processing protein 46; AltName:
Full=p12B
gi|8927592|gb|AAF82135.1|AF281134_1 exosome component Rrp46 [Homo sapiens]
gi|208966242|dbj|BAG73135.1| exosome component 5 [synthetic construct]
Length = 235
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 122
>gi|380814818|gb|AFE79283.1| exosome complex component RRP46 [Macaca mulatta]
gi|383414573|gb|AFH30500.1| exosome complex component RRP46 [Macaca mulatta]
Length = 235
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 122
>gi|21693160|gb|AAM75154.1| chronic myelogenous leukemia tumor antigen 28 [Homo sapiens]
Length = 268
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 55 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 114
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 115 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 155
>gi|73947485|ref|XP_852838.1| PREDICTED: exosome complex component RRP46 [Canis lupus familiaris]
Length = 235
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 122
>gi|68533900|gb|AAH99290.1| LOC733302 protein [Xenopus laevis]
Length = 224
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR C S+L R GSA++ QGDT VLA E K ++EVI + KTG
Sbjct: 17 LREYGCEQSLLSRPDGSATFLQGDTSVLAGVYGPAEIKVSREIHNKATLEVILRPKTGLP 76
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
QEK +E +++ T +S+ I +++P T+ ++++Q+
Sbjct: 77 AIQEKNHEQLIRETCESVIIGSLHPRTSITIVLQI 111
>gi|301776621|ref|XP_002923728.1| PREDICTED: exosome complex exonuclease RRP46-like [Ailuropoda
melanoleuca]
Length = 239
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 26 RGPACSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 85
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 86 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 126
>gi|281340717|gb|EFB16301.1| hypothetical protein PANDA_012923 [Ailuropoda melanoleuca]
Length = 206
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPACSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 122
>gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
Length = 237
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR N +RP+ L++A GSA +SQ +KVLAA + E K +E
Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKSYVE 66
Query: 55 VIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + G +KE E+++K ++S+ + T+ P T SVI+QV+
Sbjct: 67 VTFTPAFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVF 112
>gi|413949053|gb|AFW81702.1| hypothetical protein ZEAMMB73_884899 [Zea mays]
Length = 405
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G+QE+EYEM LKRTLQSIC+LT++PNTTTSV++Q+
Sbjct: 109 GRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQL 143
>gi|194675249|ref|XP_001790575.1| PREDICTED: exosome complex component RRP46 [Bos taurus]
gi|297485653|ref|XP_002695041.1| PREDICTED: exosome complex component RRP46 [Bos taurus]
gi|296477725|tpg|DAA19840.1| TPA: exosome component 5-like [Bos taurus]
Length = 242
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 16/111 (14%)
Query: 5 RAD-GRNPN------QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENP 48
RAD G P LR AC ++L R GSAS+ QGDT VLA E
Sbjct: 12 RADSGTEPGPRVPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIF 71
Query: 49 EKVSIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K ++EVI + KTG G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 72 NKATLEVILRPKTGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQV 122
>gi|347582673|ref|NP_001231590.1| exosome component 5 [Sus scrofa]
Length = 235
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R+P+ LR AC ++L R GSAS+ QGDT VLA + E K ++EVI +
Sbjct: 22 RSPSCTLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVRKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQV 122
>gi|426388821|ref|XP_004060830.1| PREDICTED: exosome complex component RRP46 [Gorilla gorilla
gorilla]
Length = 235
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR AC ++L R GSAS+ QGDT VLA E K ++EVI + K G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 88 GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 122
>gi|395859609|ref|XP_003802126.1| PREDICTED: exosome complex component RRP46 [Otolemur garnettii]
Length = 235
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFMQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQV 122
>gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi]
gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 63/106 (59%), Gaps = 8/106 (7%)
Query: 2 EIDRADGR-NPNQLRPLACYCSILHRAHGSASWSQGDTKVL-------AAKNENPEKVSI 53
+I R D R NQLR + +L +A GS +SQG+T V+ ++ E ++ I
Sbjct: 4 QILRRDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGPESSMKEKGDQAII 63
Query: 54 EVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+V+++ + + ++EKEYE+I+++TL+++ + I P T ++ IQV
Sbjct: 64 DVMFQPRDKKASEEEKEYELIIRQTLENVILTNIYPRTVITISIQV 109
>gi|189067465|dbj|BAG37447.1| unnamed protein product [Homo sapiens]
Length = 235
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPNQ-LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P + LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGRSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V+ QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVPQV 122
>gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-like, partial [Saccoglossus
kowalevskii]
Length = 198
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 10/109 (9%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
M RAD N +LR +C ++L R GSA++ QGDT V+ A E +K
Sbjct: 1 MTSQRADCGNL-ELRSQSCEQNLLSRPDGSATYCQGDTSVIVAVYGPAEVKQSKEFLDKA 59
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
++EVI+K K G G EK E +++ T ++I + ++P ++ ++IIQV
Sbjct: 60 TLEVIFKPKVGIPGCSEKFQERLIRNTCETIVLTALHPRSSINIIIQVM 108
>gi|410982976|ref|XP_003997820.1| PREDICTED: exosome complex component RRP46 [Felis catus]
Length = 235
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQV 122
>gi|344298319|ref|XP_003420841.1| PREDICTED: exosome complex component RRP46-like [Loxodonta
africana]
Length = 235
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR AC ++L R GSAS+ QGDT VLA E K ++EV+ + KTG
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVLLRPKTGLP 87
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 88 GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQV 122
>gi|403305478|ref|XP_003943292.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP46,
partial [Saimiri boliviensis boliviensis]
Length = 238
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 55 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 114
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T ++ + T++P T+ +V++QV
Sbjct: 115 PKIGLPGVAEKSRERLIRNTCEAAVLGTLHPRTSITVVLQV 155
>gi|417397593|gb|JAA45830.1| Putative exosome complex component rrp46-like protein [Desmodus
rotundus]
Length = 235
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT +LA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSILAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGVLHPRTSITVVLQV 122
>gi|189441917|gb|AAI67726.1| LOC100170617 protein [Xenopus (Silurana) tropicalis]
Length = 226
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR C S+L R GSA++ QGDT V+A E K ++EVI + KTG
Sbjct: 19 LREYGCEQSLLSRPDGSATFLQGDTSVMAGVYGPAEIKVSREIHNKATLEVILRPKTGLP 78
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
QEK E +++ T +S+ I +++P T+ ++++Q+
Sbjct: 79 AIQEKNQEQLIRETCESVIIGSLHPRTSITIVLQI 113
>gi|444518498|gb|ELV12200.1| Exosome complex component RRP46 [Tupaia chinensis]
Length = 235
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKTRERLIRNTCEAVVLGALHPRTSITVVLQV 122
>gi|312596907|ref|NP_001100963.2| exosome complex exonuclease RRP46 [Rattus norvegicus]
Length = 235
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNP-NQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R+P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RSPVCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQV 122
>gi|187469539|gb|AAI67023.1| Exosc5 protein [Rattus norvegicus]
Length = 233
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNP-NQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R+P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 20 RSPVCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 79
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 80 PKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQV 120
>gi|291412161|ref|XP_002722356.1| PREDICTED: exosome component 5-like [Oryctolagus cuniculus]
Length = 235
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + ++P T+ +V++Q+
Sbjct: 82 PKIGLPGVAEKNRERMIRNTCEAVVLGALHPRTSITVVLQI 122
>gi|159469337|ref|XP_001692824.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
gi|158278077|gb|EDP03843.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
Length = 242
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 15 RPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIG 65
R L C ++L RA GSA W+Q + VLAA + E+ E+ +EV++K + G G
Sbjct: 3 RTLVCERAVLDRADGSAKWTQEGSSVLAAVYGPRQAKLQKEDAERAVVEVVFKPRAGLQG 62
Query: 66 KQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+++ E+ ++ L+ + L + P T+ V++QV
Sbjct: 63 HEDRSLELEIRGILEGVIPLGMFPRTSVMVVLQVL 97
>gi|126329382|ref|XP_001372178.1| PREDICTED: exosome complex component RRP46-like [Monodelphis
domestica]
Length = 237
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR AC ++L R GSAS+ QGDT VL E K ++EVI K K G
Sbjct: 30 LRHFACEQNLLSRPDGSASFLQGDTSVLVGVYGPAEVKVSKEIFNKATLEVILKPKIGLP 89
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G EK E +++ T +++ + T++P T+ +V++Q+
Sbjct: 90 GVAEKSRERLIRTTCEAVVLGTLHPRTSITVVLQI 124
>gi|20070392|ref|NP_613052.1| exosome complex component RRP46 [Mus musculus]
gi|21759413|sp|Q9CRA8.1|EXOS5_MOUSE RecName: Full=Exosome complex component RRP46; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46
gi|12839596|dbj|BAB24607.1| unnamed protein product [Mus musculus]
gi|12840879|dbj|BAB24993.1| unnamed protein product [Mus musculus]
gi|148692300|gb|EDL24247.1| exosome component 5, isoform CRA_b [Mus musculus]
Length = 235
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR AC ++L R GSAS+ QGDT VLA E K ++EVI + K G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 88 GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQV 122
>gi|74199186|dbj|BAE33136.1| unnamed protein product [Mus musculus]
Length = 235
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR AC ++L R GSAS+ QGDT VLA E K ++EVI + K G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 88 GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQV 122
>gi|21706518|gb|AAH34358.1| Exosome component 5 [Mus musculus]
Length = 235
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR AC ++L R GSAS+ QGDT VLA E K ++EVI + K G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 88 GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQV 122
>gi|422295380|gb|EKU22679.1| exosome complex component RRP46, partial [Nannochloropsis gaditana
CCMP526]
Length = 244
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R D R NQLRP C L+RA GSA ++QG T VLAA + E E ++E
Sbjct: 27 RPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVE 86
Query: 55 VIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V G EKE E +K L++ L P T VI QV+
Sbjct: 87 VTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVY 132
>gi|431911571|gb|ELK13728.1| Exosome complex exonuclease RRP46 [Pteropus alecto]
Length = 231
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR AC ++L R GSAS+ QGDT +LA E K ++EVI + K G
Sbjct: 24 LRHFACEQNLLSRPDGSASFLQGDTSILAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 83
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 84 GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQV 118
>gi|332242411|ref|XP_003270380.1| PREDICTED: exosome complex component RRP46 isoform 1 [Nomascus
leucogenys]
gi|441654056|ref|XP_004091049.1| PREDICTED: exosome complex component RRP46 isoform 2 [Nomascus
leucogenys]
Length = 235
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 82 PKIRLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 122
>gi|348552426|ref|XP_003462029.1| PREDICTED: exosome complex component RRP46-like [Cavia porcellus]
Length = 240
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR AC ++L R GSA++ QGDT VLA E K ++EVI + K G
Sbjct: 33 LRHFACEQNLLSRPDGSATFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 92
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 93 GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQV 127
>gi|260791023|ref|XP_002590540.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
gi|229275734|gb|EEN46551.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
Length = 219
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR C ++L R GSAS QGDT VLAA E +K +++VI+K K G
Sbjct: 11 LRSFECEQNLLSRPDGSASVRQGDTSVLAAVYGPGEVKMSEEIIDKATLKVIFKPKIGLP 70
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G EK E +L+ T +S+ + ++P + ++++QV
Sbjct: 71 GCAEKLQERLLRNTCESVVLAILHPRSGVNIVLQV 105
>gi|126697382|gb|ABO26648.1| exosome component 5 [Haliotis discus discus]
Length = 211
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 12 NQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTG 62
LRP+ +L R G+ +++QGDT +LAA E ++ ++EVI+K K+G
Sbjct: 2 TDLRPMTSDLGVLTRPDGTVTFTQGDTGILAAVYGPGEVKIAREILDRATVEVIYKPKSG 61
Query: 63 QIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
G E+ +E ++ T++++ + +++P + SV +Q
Sbjct: 62 LPGCSERLHERYIRNTVETVILASLHPRSCISVTVQ 97
>gi|156389595|ref|XP_001635076.1| predicted protein [Nematostella vectensis]
gi|156222166|gb|EDO43013.1| predicted protein [Nematostella vectensis]
Length = 232
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 56/96 (58%), Gaps = 9/96 (9%)
Query: 13 QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQ 63
+LR + C +L +A GS+ ++QGDT+V+AA E ++ ++EVI++ K G
Sbjct: 14 ELRAMFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVKLNKELIDRATLEVIFRPKIGI 73
Query: 64 IGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G EK E I++ + + I + ++P + ++++QV
Sbjct: 74 PGCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQV 109
>gi|320590667|gb|EFX03110.1| exosome complex subunit [Grosmannia clavigera kw1407]
Length = 246
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 17 LACYCSILHRAHGSASWSQGDTKVLAAKN---------ENPEKVSIEVIWKSKTGQIGKQ 67
L + L RA GSA++S G V A+ N E+P+ +I+V+ + G G
Sbjct: 6 LQARLATLPRADGSATYSHGGYTVTASANGPIEAQRRDEDPDAANIDVVVRPAAGVGGPS 65
Query: 68 EKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
E+ +E+IL++TLQ I ++ P T V++Q+
Sbjct: 66 ERNHELILQKTLQDIVLVQEFPRCTIQVVLQI 97
>gi|417396273|gb|JAA45170.1| Putative exosome complex component rrp46-like protein [Desmodus
rotundus]
Length = 151
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT +LA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSILAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVI 96
K G G EK E +++ T +++ + ++P T+ +V+
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGVLHPRTSITVV 119
>gi|297824101|ref|XP_002879933.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325772|gb|EFH56192.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 138
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/32 (81%), Positives = 29/32 (90%)
Query: 68 EKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
E+EYE ILKRTLQSIC+LT+ PN TTSVIIQV
Sbjct: 78 EREYETILKRTLQSICVLTVVPNITTSVIIQV 109
>gi|157114354|ref|XP_001658056.1| hypothetical protein AaeL_AAEL006819 [Aedes aegypti]
gi|108877318|gb|EAT41543.1| AAEL006819-PA [Aedes aegypti]
Length = 217
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 9 RNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKN---------ENPEKVSIEVIWKS 59
++ N LRP+ C ++L R+ GSA +QG+T V+A+ N N EK I++ +K
Sbjct: 5 KSENSLRPMHCELNLLTRSDGSAMLTQGETAVVASVNGPIEVKLQHMNVEKSHIDIYFKP 64
Query: 60 KTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++G ++ E ++K T +S + ++P T S+ +Q
Sbjct: 65 RSGMGSVNDRLLESLIKNTYESAILTGLHPRTAISIQLQ 103
>gi|297840733|ref|XP_002888248.1| hypothetical protein ARALYDRAFT_475442 [Arabidopsis lyrata subsp.
lyrata]
gi|297334089|gb|EFH64507.1| hypothetical protein ARALYDRAFT_475442 [Arabidopsis lyrata subsp.
lyrata]
Length = 140
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 66 KQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K E+EYE ILKRTLQSIC+LT+ NTTTSVIIQV
Sbjct: 69 KVEREYETILKRTLQSICVLTVVSNTTTSVIIQV 102
>gi|321475274|gb|EFX86237.1| hypothetical protein DAPPUDRAFT_193332 [Daphnia pulex]
Length = 218
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 12 NQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTG 62
N +R L C S+L RA GS +SQG+T V+A+ + E +++ IE+ +K KTG
Sbjct: 6 NSIRALKCEQSVLSRADGSVMFSQGNTVVMASVYGPLEAKIQKELSDRMYIELNYKPKTG 65
Query: 63 QIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
G E+ E ++K T I + ++P T + +Q
Sbjct: 66 MPGVAERGKEKLIKTTCNHIILTNLHPRTAVCITVQ 101
>gi|297853206|ref|XP_002894484.1| hypothetical protein ARALYDRAFT_474556 [Arabidopsis lyrata subsp.
lyrata]
gi|297340326|gb|EFH70743.1| hypothetical protein ARALYDRAFT_474556 [Arabidopsis lyrata subsp.
lyrata]
Length = 122
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 43/56 (76%), Gaps = 4/56 (7%)
Query: 48 PEKVSIEVIWK-SKTGQ---IGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
P+++ I +++ S+ G + K E+EY+ ILKRTLQSIC+LT+ PN+TTSVIIQV
Sbjct: 29 PDRLVIVNVFRCSEEGLFCCLRKVEREYKTILKRTLQSICVLTVVPNSTTSVIIQV 84
>gi|432906534|ref|XP_004077577.1| PREDICTED: exosome complex component RRP46-like [Oryzias latipes]
Length = 185
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR C S+L R GSAS+ QGDT V+A E ++ ++EV+ + K G
Sbjct: 11 LREFGCEQSLLSRPDGSASFVQGDTSVMAGVYGPAEVKVSKEIYDRATLEVLVQPKVGLP 70
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+E+ E ++ T + +LT++P ++ ++++QV
Sbjct: 71 SVRERSQEQCVRETCEEALLLTLHPRSSLTLVLQVL 106
>gi|348543409|ref|XP_003459176.1| PREDICTED: exosome complex component RRP46-like [Oreochromis
niloticus]
Length = 219
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR C S+L R GSAS+ QGDT V+A E ++ ++EV+ + K G
Sbjct: 11 LREFGCEQSLLSRPDGSASFVQGDTSVMAGVYGPAEVKVSKEIYDRATLEVLVQPKVGLP 70
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+E+ E ++ T ++ +LT++P ++ ++I+QV
Sbjct: 71 SVRERSQEQCVRETCEASLLLTLHPRSSLTLILQVL 106
>gi|297790686|ref|XP_002863228.1| hypothetical protein ARALYDRAFT_497144 [Arabidopsis lyrata subsp.
lyrata]
gi|297309062|gb|EFH39487.1| hypothetical protein ARALYDRAFT_497144 [Arabidopsis lyrata subsp.
lyrata]
Length = 103
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 66 KQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K E+EYE ILKRT+QSIC+LT+ NTTTSVIIQV
Sbjct: 51 KVEREYETILKRTIQSICVLTVVLNTTTSVIIQV 84
>gi|427786915|gb|JAA58909.1| Putative rrp46 subunit of eukaryotic exosome [Rhipicephalus
pulchellus]
Length = 226
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
ME +R GR LR LA S L R GSA +QG+T V A E+PEK
Sbjct: 1 METNRT-GR----LRKLAAKFSNLSRPDGSAILAQGETVVQAGVYGPVEVKQMREHPEKA 55
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
++EV ++SK+GQ ++ E +++ TL++ + ++P + S+ Q +
Sbjct: 56 TVEVFFRSKSGQQSCSDRMSEKVIRSTLETAMLTALHPRSCISLTCQEF 104
>gi|297795147|ref|XP_002865458.1| hypothetical protein ARALYDRAFT_494696 [Arabidopsis lyrata subsp.
lyrata]
gi|297311293|gb|EFH41717.1| hypothetical protein ARALYDRAFT_494696 [Arabidopsis lyrata subsp.
lyrata]
Length = 122
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 66 KQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K E+EY+ ILKRTLQ+IC+LT+ PN+TTSVIIQV
Sbjct: 51 KVEREYKTILKRTLQNICVLTVVPNSTTSVIIQV 84
>gi|427786901|gb|JAA58902.1| Putative rrp46 subunit of eukaryotic exosome [Rhipicephalus
pulchellus]
Length = 231
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 12 NQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTG 62
+LR LA S L R GSA +QG+T V A E+PEK ++EV ++SK+G
Sbjct: 12 GRLRKLAAKFSNLSRPDGSAILAQGETVVQAGVYGPVEVKQMREHPEKATVEVFFRSKSG 71
Query: 63 QIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
Q ++ E +++ TL++ + ++P + S+ Q +
Sbjct: 72 QQSCSDRMSEKVIRSTLETAMLTALHPRSCISLTCQEF 109
>gi|297838825|ref|XP_002887294.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333135|gb|EFH63553.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 122
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 66 KQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K E+EY+ ILKRTLQSIC+LT+ PN+T SVIIQV
Sbjct: 51 KVEREYKTILKRTLQSICVLTVVPNSTISVIIQV 84
>gi|297801466|ref|XP_002868617.1| hypothetical protein ARALYDRAFT_493864 [Arabidopsis lyrata subsp.
lyrata]
gi|297838301|ref|XP_002887032.1| hypothetical protein ARALYDRAFT_475740 [Arabidopsis lyrata subsp.
lyrata]
gi|297314453|gb|EFH44876.1| hypothetical protein ARALYDRAFT_493864 [Arabidopsis lyrata subsp.
lyrata]
gi|297332873|gb|EFH63291.1| hypothetical protein ARALYDRAFT_475740 [Arabidopsis lyrata subsp.
lyrata]
Length = 100
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 66 KQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K E+EY+ ILKRTLQSIC+L + PN+TTSVIIQV
Sbjct: 29 KVEREYKTILKRTLQSICVLKVVPNSTTSVIIQV 62
>gi|170067650|ref|XP_001868566.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
gi|167863769|gb|EDS27152.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
Length = 217
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 12 NQLRPLACYCSILHRAHGSASWSQGDTKVLAAKN---------ENPEKVSIEVIWKSKTG 62
+ LRP+ C +IL R+ GSA +QG+T V A+ N N EK +E+ ++ ++G
Sbjct: 8 DSLRPMFCELNILTRSDGSAMLTQGETAVTASVNGPVEVKLQHMNVEKSYVEIHFRPRSG 67
Query: 63 QIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++ E +++ T +S + ++P T S+ IQ
Sbjct: 68 MGSVNDRLLENLIRNTYESALLTALHPRTAVSIQIQ 103
>gi|297805692|ref|XP_002870730.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316566|gb|EFH46989.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 84
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 31/36 (86%)
Query: 64 IGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+ K E+EY+ ILKRTLQSIC+LT+ PN+T SVIIQ+
Sbjct: 49 LRKVEREYKTILKRTLQSICVLTVVPNSTASVIIQI 84
>gi|440804447|gb|ELR25324.1| exosome complex exonuclease rrp41, putative [Acanthamoeba
castellanii str. Neff]
Length = 205
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSKTGQI 64
R DGR P +LR + ++ +A GSA + QG+T+VLA P++ + K+ +
Sbjct: 13 RMDGRRPGELRRIEAKMGVVSKADGSALFRQGNTQVLATIY-GPKEAGF-ASGERKSKKT 70
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
K+ E M++++T +S+ + + P + + +QV
Sbjct: 71 DKKTVELGMLIRQTFESVVMTALYPRSQIDIYVQVL 106
>gi|442750019|gb|JAA67169.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Ixodes ricinus]
Length = 223
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 10 NPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSK 60
NP +LR LA + R GSA + G+T + A E EK ++EV ++SK
Sbjct: 5 NPARLRKLAVKFDNVSRPDGSALLAHGETVIQAGVYGPIEVRQARELAEKATVEVFYRSK 64
Query: 61 TGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
TG ++ E +++ TL+++ ++ ++P T S+ +Q
Sbjct: 65 TGHQNCSDRLVEKVVRSTLETVMLVALHPRTCISISLQ 102
>gi|297793375|ref|XP_002864572.1| hypothetical protein ARALYDRAFT_495957 [Arabidopsis lyrata subsp.
lyrata]
gi|297310407|gb|EFH40831.1| hypothetical protein ARALYDRAFT_495957 [Arabidopsis lyrata subsp.
lyrata]
Length = 108
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 66 KQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K E+EYE ILKRTLQ+IC+LT+ NT TSVIIQV
Sbjct: 37 KVEREYETILKRTLQNICVLTVVTNTATSVIIQV 70
>gi|2286200|gb|AAC50039.1| polynucleotide phosphorylase [Pisum sativum]
Length = 897
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVS 52
R+DGR P ++RP+ CSIL RAHGSA +++G+T+ LA K++
Sbjct: 444 RSDGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMA 491
>gi|410910298|ref|XP_003968627.1| PREDICTED: exosome complex component RRP46-like [Takifugu rubripes]
Length = 219
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 9/96 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR +C S+L R GS+S+ QGDT VLA E ++ ++EV+ + K G
Sbjct: 11 LRDFSCEQSLLSRPDGSSSFMQGDTSVLAGVYGPAEVKVSKEIYDRATLEVLIQPKVGLP 70
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+E+ E ++ T ++ +L+++P ++ ++++QV
Sbjct: 71 SVKERSQEQNVRETCEASLLLSLHPRSSLTLVLQVL 106
>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
Length = 246
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
RADGR P++LR + C + +A GSA QG+TKVLA +KV +
Sbjct: 13 RADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKVLL 72
Query: 54 EVIWKSKTGQIG---------KQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ T G ++ +E M L+RT Q+ + + P + + +QV
Sbjct: 73 NCQYSMATFSTGERKTRPKGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQVL 128
>gi|357508847|ref|XP_003624712.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
gi|355499727|gb|AES80930.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
Length = 734
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVS 52
R+DGR PN++RP+ C +L RAHGSA +++G+T+ LA K++
Sbjct: 502 RSDGRTPNEIRPINSSCGLLPRAHGSALFTRGETQSLAVATLGDNKMA 549
>gi|297803290|ref|XP_002869529.1| hypothetical protein ARALYDRAFT_491986 [Arabidopsis lyrata subsp.
lyrata]
gi|297315365|gb|EFH45788.1| hypothetical protein ARALYDRAFT_491986 [Arabidopsis lyrata subsp.
lyrata]
Length = 125
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 29/34 (85%)
Query: 66 KQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K E+EYE ILK+TLQ+IC+LT+ NT TSVIIQV
Sbjct: 54 KVEREYETILKKTLQNICVLTVVTNTATSVIIQV 87
>gi|385806380|ref|YP_005842778.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
gi|383796243|gb|AFH43326.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
Length = 246
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR P+QLRP++ IL A GSA S G T+V+AA P++ +
Sbjct: 16 RVDGRRPDQLRPISMKVGILKNAQGSALVSYGKTQVMAAVYGPREALPRHMTLPDRAILR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ + + K+ ++E E +++ L++ + P TT V I+V
Sbjct: 76 IRYHMAPFSTSERKSPAPTRREIELSKVIREALEATVFSELFPRTTIDVFIEVL 129
>gi|125599245|gb|EAZ38821.1| hypothetical protein OsJ_23227 [Oryza sativa Japonica Group]
Length = 778
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA
Sbjct: 324 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALA 361
>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
639]
gi|449066637|ref|YP_007433719.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449068911|ref|YP_007435992.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
gi|76364178|sp|Q4JB27.1|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
gi|449035145|gb|AGE70571.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449037419|gb|AGE72844.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
Length = 243
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNEN------PEKVSIE 54
R DGR ++LRP+ +L A GSA + G+TKV+AA K + P+K S+
Sbjct: 16 RTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S +L + P T + ++V
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVL 129
>gi|332020128|gb|EGI60572.1| Exosome complex exonuclease RRP46 [Acromyrmex echinatior]
Length = 220
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPE---------KVSIEVIWKSKTGQI 64
LRP+ C ++L R+ GS + QGDT ++A N E +VSIEV + G
Sbjct: 12 LRPINCEINLLSRSDGSTMFMQGDTTIIAGVNGPLEAKSQKMAYDRVSIEVTYTPLKGPA 71
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++ E +K T +S +++ +PNT + +Q
Sbjct: 72 KVDDRLIETYIKETCESAILVSFHPNTMVCINLQ 105
>gi|391224436|ref|NP_001038817.2| exosome complex exonuclease RRP46 [Danio rerio]
Length = 230
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 9/87 (10%)
Query: 22 SILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYE 72
S+L R GS+++ QGDT +LA E ++ ++EV+ + K G +E+ E
Sbjct: 30 SLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLPSVRERARE 89
Query: 73 MILKRTLQSICILTINPNTTTSVIIQV 99
++ T ++ +LT++P ++ +VI+QV
Sbjct: 90 QCVRETCEAALLLTLHPRSSLTVILQV 116
>gi|224146058|ref|XP_002325864.1| predicted protein [Populus trichocarpa]
gi|222862739|gb|EEF00246.1| predicted protein [Populus trichocarpa]
Length = 730
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR P+++RP+ C IL RAHGSA +++G+T+ LA
Sbjct: 380 RSDGRTPDRIRPIDSRCGILPRAHGSALFTRGETQSLA 417
>gi|112419436|gb|AAI22388.1| Exosome component 5 [Danio rerio]
gi|182891334|gb|AAI64315.1| Exosc5 protein [Danio rerio]
Length = 218
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 9/87 (10%)
Query: 22 SILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYE 72
S+L R GS+++ QGDT +LA E ++ ++EV+ + K G +E+ E
Sbjct: 18 SLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLPSVRERARE 77
Query: 73 MILKRTLQSICILTINPNTTTSVIIQV 99
++ T ++ +LT++P ++ +VI+QV
Sbjct: 78 QCVRETCEAALLLTLHPRSSLTVILQV 104
>gi|307185835|gb|EFN71676.1| Exosome complex exonuclease RRP46 [Camponotus floridanus]
Length = 220
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPE---------KVSIEVIWKSKTGQI 64
LRP+ C ++L R+ GS + QGDT ++A N E K+SIEV + TG
Sbjct: 12 LRPMNCEINLLSRSDGSTMFMQGDTTIVAGINGPMEVKSQKMAYDKLSIEVTYTPLTGPA 71
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++ E ++ + +S +++++PNT + +Q
Sbjct: 72 KVDDRLIETYIRESCESAILVSLHPNTMICINLQ 105
>gi|332799230|ref|YP_004460729.1| polyribonucleotide nucleotidyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|438002358|ref|YP_007272101.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|332696965|gb|AEE91422.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|432179152|emb|CCP26125.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter
acetatoxydans Re1]
Length = 700
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR PNQ+RP++C IL R HGS +++G T+VL
Sbjct: 311 RPDGRTPNQIRPISCEVGILPRTHGSGLFTRGQTQVL 347
>gi|302039398|ref|YP_003799720.1| polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
gi|300607462|emb|CBK43795.1| Polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
Length = 705
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P +RP+ C +L RAHGSA +++G+T+ LA
Sbjct: 312 RADGRGPADIRPITCEVGVLPRAHGSAVFTRGETQSLA 349
>gi|289524415|ref|ZP_06441269.1| polyribonucleotide nucleotidyltransferase, partial [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289502345|gb|EFD23509.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 122
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 30/37 (81%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGR ++LRP++C S+L RAHGSA +++G+T+ +
Sbjct: 47 RADGRAMDELRPISCEVSLLPRAHGSAVFTRGETQAM 83
>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
Length = 247
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNEN------PEKVSIE 54
R DGR P+++RP+ +L A GSA + G+TKV+AA K + P++ +
Sbjct: 20 RLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLR 79
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ + P T V ++V
Sbjct: 80 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVL 133
>gi|302348936|ref|YP_003816574.1| exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15]
gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
345-15]
Length = 242
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR P+++RP+ +L A GSA S G TKVLAA P++ S+
Sbjct: 15 RLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPDRASLF 74
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K+ ++E E +L+ L+ + I + P T V ++V
Sbjct: 75 VRYHMAPFSTEERKSPVPTRREVEISKVLREALEPVVITELFPRTVIEVYVEVL 128
>gi|363548435|sp|Q975G8.2|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
gi|342306198|dbj|BAK54287.1| exosome core subunit Rrp41 [Sulfolobus tokodaii str. 7]
Length = 243
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNEN------PEKVSIE 54
R DGR P+++RP+ +L A GSA + G+TKV+AA K + P++ +
Sbjct: 16 RLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ + P T V ++V
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVL 129
>gi|154313781|ref|XP_001556216.1| hypothetical protein BC1G_05740 [Botryotinia fuckeliana B05.10]
gi|347832379|emb|CCD48076.1| similar to exosome complex subunit Rrp46 [Botryotinia fuckeliana]
Length = 256
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 22 SILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYE 72
S LHR GSAS+SQ ++ A ++E PE+ +I+VI + G G +E+ E
Sbjct: 12 SPLHRVDGSASFSQNGYTIIGAVNGPIEVQRRDELPEEAAIDVIVRPAAGVGGTRERHLE 71
Query: 73 MILKRTLQSICILTINPNTTTSVIIQV 99
IL+ +L+ I ++ P T + +Q+
Sbjct: 72 AILQSSLRQIILIHNFPRTLIQITLQI 98
>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
Length = 240
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN----------PEKVSIE 54
R DGR PN+LRP+ +L A GSA G TKV+AA P++ I
Sbjct: 13 RHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRALIR 72
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ K+ ++E E +++ L+S+ + P TT V I+V
Sbjct: 73 CRYHMAPFSTSDRKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVL 126
>gi|374314854|ref|YP_005061282.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350498|gb|AEV28272.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta pleomorpha
str. Grapes]
Length = 701
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGRN Q+RP+ C +L RAHGSA +++G+T+ LA
Sbjct: 317 RTDGRNVEQIRPITCEVGVLARAHGSALFTRGETQALA 354
>gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa Japonica Group]
gi|75118006|sp|Q69LE7.1|PNP1_ORYSJ RecName: Full=Probable polyribonucleotide nucleotidyltransferase 1,
chloroplastic; AltName: Full=Polynucleotide
phosphorylase 1; Short=PNPase 1; Flags: Precursor
gi|50509724|dbj|BAD31776.1| putative polynucleotide phosphorylase [Oryza sativa Japonica Group]
gi|113610518|dbj|BAF20896.1| Os07g0168000 [Oryza sativa Japonica Group]
Length = 902
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA
Sbjct: 448 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALA 485
>gi|357111469|ref|XP_003557535.1| PREDICTED: polyribonucleotide nucleotidyltransferase-like
[Brachypodium distachyon]
Length = 900
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA
Sbjct: 446 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALA 483
>gi|302756855|ref|XP_002961851.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
gi|300170510|gb|EFJ37111.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
Length = 808
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R+DGR + +RP++C C++L RAHGSA +++G+T+ L A
Sbjct: 420 RSDGRGISDVRPISCSCNLLPRAHGSAIFTRGETQALVA 458
>gi|302798082|ref|XP_002980801.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
gi|300151340|gb|EFJ17986.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
Length = 806
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R+DGR + +RP++C C++L RAHGSA +++G+T+ L A
Sbjct: 420 RSDGRGISDVRPISCSCNLLPRAHGSAIFTRGETQALVA 458
>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
Length = 248
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 19/115 (16%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------KNENPEKVSIEVI- 56
R DGR +++R + ++ RA GSA + QG+T+VLAA KN++ K +I
Sbjct: 14 RVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIIN 73
Query: 57 --WKSKTGQIGKQEKEYE---------MILKRTLQSICILTINPNTTTSVIIQVW 100
+ T G+++++++ +++++T +S+ + + P T + +QV
Sbjct: 74 CEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVL 128
>gi|125557368|gb|EAZ02904.1| hypothetical protein OsI_25038 [Oryza sativa Indica Group]
Length = 865
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA
Sbjct: 411 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALA 448
>gi|289523245|ref|ZP_06440099.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503788|gb|EFD24952.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 741
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGR ++LRP++C S+L RAHGSA +++G+T+ L
Sbjct: 314 RADGRAMDELRPISCEVSLLPRAHGSAVFTRGETQAL 350
>gi|429216660|ref|YP_007174650.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
gi|429133189|gb|AFZ70201.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
Length = 243
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---KNEN------PEKVSIEV 55
R DGR P+++RP+ +L A GSA G T+VLAA E+ P++ ++ V
Sbjct: 17 RLDGRKPDEVRPIKMQVGVLTNADGSALVEYGLTRVLAAVYGPKESQKSMLLPDRATLRV 76
Query: 56 IW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ + K ++E E +L+ +L+ + I P T+ V I+V
Sbjct: 77 RYHMAPFSTEERKNPAPTRRELELSKVLRESLEPVVITEYFPRTSIDVFIEVL 129
>gi|222100220|ref|YP_002534788.1| polynucleotide phosphorylase/polyadenylase [Thermotoga neapolitana
DSM 4359]
gi|254782743|sp|B9K8Y9.1|PNP_THENN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221572610|gb|ACM23422.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
DSM 4359]
Length = 707
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR PN++RP++C + R HGSA +++G+T+ L
Sbjct: 317 RADGRKPNEIRPISCEVGLFPRTHGSALFTRGETQSLG 354
>gi|242047540|ref|XP_002461516.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
gi|241924893|gb|EER98037.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
Length = 877
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA
Sbjct: 424 RSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLA 461
>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
Length = 243
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVS------IE 54
R DGR P++LRP+ +L A+GSA G+TK LAA + P+ +S +
Sbjct: 14 RVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRAVLR 73
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K+ ++E E +++ L+S+ T P + V I++
Sbjct: 74 VRYHMAPFSTSERKSPAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEIL 127
>gi|326430537|gb|EGD76107.1| hypothetical protein PTSG_00813 [Salpingoeca sp. ATCC 50818]
Length = 219
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
M R DGR +LRP+ C ++L + GSAS+S GD+ V+AA E ++
Sbjct: 1 MADARVDGRKAMELRPMQCDLALLDKPDGSASFSFGDSSVMAAVYGPRDVPLSREKHDRS 60
Query: 52 SIEVIWKS 59
++EV W S
Sbjct: 61 TVEVAWHS 68
>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
Length = 247
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 19/115 (16%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA-------AKNENP---EKVSIE 54
R DGR ++LR + C +L +A GSA G+TK LA +N+ ++V +
Sbjct: 13 RIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRVLLN 72
Query: 55 VIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + T G+++K E M+++RT ++ ++ + P + + +QV
Sbjct: 73 VQFGMATFSTGERKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQIDIYVQVL 127
>gi|414883682|tpg|DAA59696.1| TPA: chloroplast RNA processing4 [Zea mays]
Length = 880
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA
Sbjct: 429 RSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLA 466
>gi|405119992|gb|AFR94763.1| hypothetical protein CNAG_01381 [Cryptococcus neoformans var.
grubii H99]
Length = 299
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R DGR P QLRPL L RA GSA ++ G VLA+ + E P+K + EV
Sbjct: 9 RPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDKATFEV 68
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
+ G + L+ I L +P + +++Q
Sbjct: 69 NHRPLEGVGATPSRALVTTLETIFPPILSLEKHPRSLVQLVVQ 111
>gi|209877631|ref|XP_002140257.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209555863|gb|EEA05908.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 239
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAK------NENPEKVSIE 54
MEI R DGR +LRP+ + H GS+ +S G ++ A N K ++
Sbjct: 1 MEI-RLDGRQYLELRPINIRIGVFHGLSGSSDFSMGLSRATAVAWQPEETNNIRGKSYLD 59
Query: 55 VIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
VI + +G G EK E+ R L+ I P SV IQV
Sbjct: 60 VIIRPNSGSTGDTEKLLELYCTRVLEDIIDFKQIPRCIVSVAIQV 104
>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
Length = 251
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA-------AKNENPEKVSIEVIW 57
R DGR P++LR + C + + GSA QG+TKVLA AK +N S +VI
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKNKSSESNDVII 73
Query: 58 KSKTGQI-------------GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ Q ++ +E++M L++ L + + P + V ++V
Sbjct: 74 NCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVL 129
>gi|452825155|gb|EME32153.1| exosome complex component RRP46 [Galdieria sulphuraria]
Length = 217
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R DGR ++R C L RA GS QG T+V+AA +NE P++ ++V
Sbjct: 9 RRDGRKAYEIRGFRCELGYLERADGSCRLEQGRTQVVAAVYGPLEARGRNELPDRTFVDV 68
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+ G + E LK + I P + +++IQ+
Sbjct: 69 SIRPFQGYTTDYLRLRERELKEIFDATIATEIQPRSCVTIVIQI 112
>gi|206890011|ref|YP_002249618.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|257096715|sp|B5YHN2.1|PNP_THEYD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206741949|gb|ACI21006.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 710
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKV 51
RADGR +++RP+ C IL R HGSA +++G+T+ L A +E+ +KV
Sbjct: 320 RADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLGTSEDEQKV 370
>gi|389860735|ref|YP_006362975.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
gi|388525639|gb|AFK50837.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
Length = 242
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR P++LRP+ +L A+GSA G TKVLAA + P++ +
Sbjct: 15 RVDGRKPDELRPIRMEIGVLKNANGSALVEYGGTKVLAAVYGPREVIPKAVQLPDRAVLR 74
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
V + + K+ ++E E +++ L+S+ P + V I+V
Sbjct: 75 VRYHMAPFSTTEHKSPAPTRREIELSKVIREALESVVFADQFPRASIDVFIEV 127
>gi|365873908|ref|ZP_09413441.1| LOW QUALITY PROTEIN: polyribonucleotide nucleotidyltransferase
[Thermanaerovibrio velox DSM 12556]
gi|363983995|gb|EHM10202.1| LOW QUALITY PROTEIN: polyribonucleotide nucleotidyltransferase
[Thermanaerovibrio velox DSM 12556]
Length = 753
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR +QLRP+ C IL + HGSA +++G+T+ LA
Sbjct: 309 EGKRADGRAMDQLRPITCEVGILPKVHGSALFTRGETQALA 349
>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
Length = 240
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN----------PEKVSIE 54
R DGR P++LRP+ +L A GSA G TK++AA P++ I
Sbjct: 13 RHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRALIR 72
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ K+ ++E E +++ L+S+ + P TT V I+V
Sbjct: 73 CRYHMAPFSTSDRKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVL 126
>gi|443703429|gb|ELU00980.1| hypothetical protein CAPTEDRAFT_140943 [Capitella teleta]
Length = 158
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR PN+LR + C + +A GSA QG+TKVLAA
Sbjct: 13 RVDGRKPNELRRIQCRMGVFSQADGSAYIEQGNTKVLAA 51
>gi|406959954|gb|EKD87172.1| hypothetical protein ACD_37C00024G0016 [uncultured bacterium]
Length = 759
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR PN +RP++ SIL R HGSA + +GDT+ L
Sbjct: 323 RPDGRKPNDIRPISAQVSILPRTHGSAIFQRGDTQAL 359
>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
Length = 246
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR PN+LR + C I +A GSA QG+TKVLAA
Sbjct: 13 RIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAA 51
>gi|321262921|ref|XP_003196179.1| hypothetical Protein CGB_I2130C [Cryptococcus gattii WM276]
gi|317462654|gb|ADV24392.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 299
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R DGR P QLRPL L RA GSA ++ G VLA+ + E P+K + EV
Sbjct: 9 RPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDKATFEV 68
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
+ G + L+ + L +P + +++Q
Sbjct: 69 NHRPLEGVGATPSRALVTTLETIFPPVLSLEKHPRSLVQLVVQ 111
>gi|150021487|ref|YP_001306841.1| polynucleotide phosphorylase/polyadenylase [Thermosipho
melanesiensis BI429]
gi|187611329|sp|A6LNF5.1|PNP_THEM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|149794008|gb|ABR31456.1| Polyribonucleotide nucleotidyltransferase [Thermosipho
melanesiensis BI429]
Length = 699
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P ++RP+ C +L R HGSA +++G+T+ L
Sbjct: 322 RADGRTPEEIRPITCEVGVLPRTHGSALFTRGETQSLG 359
>gi|217967533|ref|YP_002353039.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
DSM 6724]
gi|254782720|sp|B8E2S5.1|PNP_DICTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217336632|gb|ACK42425.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
DSM 6724]
Length = 693
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E R DGR N+LRP++C +L R HGSA + +G+T+VL+
Sbjct: 312 EKRRVDGRRLNELRPVSCEVGVLSRVHGSALFQRGETQVLS 352
>gi|255085244|ref|XP_002505053.1| predicted protein [Micromonas sp. RCC299]
gi|226520322|gb|ACO66311.1| predicted protein [Micromonas sp. RCC299]
Length = 168
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 24 LHRAHGSASWSQGDTK--VLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYE 72
L RA GSA W QG + V+AA + E+ +K++IEV W+ G + + E
Sbjct: 11 LQRAEGSARWEQGTHRSVVMAAVYGPTQTQARKEDVDKLAIEVCWRPPFGLQTPADVDAE 70
Query: 73 MILKRTLQSICILTINPNTTTSVIIQV 99
L+RTL+ I + P V++QV
Sbjct: 71 RALRRTLEQIVLTAKYPRLGLRVVVQV 97
>gi|284108781|ref|ZP_06386446.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
sp. WGA-A3]
gi|283829855|gb|EFC34146.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
sp. WGA-A3]
Length = 700
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR + +RP+ C SIL R HGSA +++G+T+ LA
Sbjct: 312 RADGRGASDIRPITCETSILPRTHGSALFTRGETQSLA 349
>gi|386346882|ref|YP_006045131.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
DSM 6578]
gi|339411849|gb|AEJ61414.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
DSM 6578]
Length = 709
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P +RP+ C +L R HGSA +++G+T+ LA
Sbjct: 312 RTDGRGPEDIRPITCEVGVLPRTHGSALFTRGETQALA 349
>gi|307718799|ref|YP_003874331.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
DSM 6192]
gi|306532524|gb|ADN02058.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
DSM 6192]
Length = 709
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P +RP+ C +L R HGSA +++G+T+ LA
Sbjct: 312 RTDGRGPEDIRPITCEIGVLPRTHGSALFTRGETQALA 349
>gi|390598731|gb|EIN08128.1| hypothetical protein PUNSTDRAFT_102893 [Punctularia
strigosozonata HHB-11173 SS5]
Length = 276
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
+R + C L RA GSA ++ G TK LA+ +NE P + + EVI + +G
Sbjct: 1 MREIVVICEGLDRADGSARFAFGLTKCLASVSGPIEVRPQNELPTQAAFEVIVRPLSGVA 60
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G + K L+ L ILT +P T +++Q
Sbjct: 61 GTRAKSIGTTLQFLLAPSIILTAHPRTLLQLVVQA 95
>gi|374850064|dbj|BAL53062.1| polynucleotide phosphorylase/polyadenylase, partial [uncultured
Thermus/Deinococcus group bacterium]
Length = 537
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P LRP+ +L RAHGSA +++G+T+VL
Sbjct: 325 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 365
>gi|404493180|ref|YP_006717286.1| polynucleotide phosphorylase/polyadenylase [Pelobacter carbinolicus
DSM 2380]
gi|123574179|sp|Q3A4A1.1|PNP_PELCD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77545244|gb|ABA88806.1| polyribonucleotide nucleotidyltransferase [Pelobacter carbinolicus
DSM 2380]
Length = 699
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ N +RP+ C +L RAHGSA +++G+T+ L A
Sbjct: 313 RIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVA 351
>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
Length = 246
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKN----------ENPEKVSIE 54
R+DGR PN+ RP+ ++ A GSA + G+T +LAA E P+K +
Sbjct: 15 RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74
Query: 55 VIWK---------SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + K+ ++E E +++ L+ + IL P TT V I+V
Sbjct: 75 VRYHMIPFSTSEGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVL 129
>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
Length = 246
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R+DGR PN+ RP+ ++ A GSA + G+T +LAA E P+K +
Sbjct: 15 RSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74
Query: 55 VIWK---------SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + K+ ++E E +++ L+ + IL P TT V I+V
Sbjct: 75 VRYHMAPFSTSEGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVL 129
>gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
HB8]
gi|81364132|sp|Q5SJ75.1|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8]
Length = 713
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P LRP+ +L RAHGSA +++G+T+VL
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
>gi|269792330|ref|YP_003317234.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269099965|gb|ACZ18952.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 752
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR +QLRP+ C +L + HGSA +++G+T+ LA
Sbjct: 312 RADGRAMDQLRPITCEVGVLPKVHGSALFTRGETQALA 349
>gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
gi|75424073|sp|Q9ZAE1.1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81405907|sp|Q72JJ8.1|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus]
gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
Length = 713
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P LRP+ +L RAHGSA +++G+T+VL
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
>gi|386360362|ref|YP_006058607.1| polyribonucleotide nucleotidyltransferase [Thermus thermophilus
JL-18]
gi|383509389|gb|AFH38821.1| polyribonucleotide nucleotidyltransferase [Thermus thermophilus
JL-18]
Length = 713
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P LRP+ +L RAHGSA +++G+T+VL
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
>gi|381190722|ref|ZP_09898239.1| polynucleotide phosphorylase/polyadenylase [Thermus sp. RL]
gi|380451431|gb|EIA39038.1| polynucleotide phosphorylase/polyadenylase [Thermus sp. RL]
Length = 713
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P LRP+ +L RAHGSA +++G+T+VL
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
>gi|384431325|ref|YP_005640685.1| Polyribonucleotide nucleotidyltransferase [Thermus thermophilus
SG0.5JP17-16]
gi|333966793|gb|AEG33558.1| Polyribonucleotide nucleotidyltransferase [Thermus thermophilus
SG0.5JP17-16]
Length = 713
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P LRP+ +L RAHGSA +++G+T+VL
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
>gi|320104995|ref|YP_004180586.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
43644]
gi|319752277|gb|ADV64037.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
43644]
Length = 766
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R+DGR P LRP++C +L +AHGSA + +G+T+ L
Sbjct: 331 RSDGRGPKDLRPISCEVGLLPKAHGSALFQRGETQAL 367
>gi|218296616|ref|ZP_03497334.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
Y51MC23]
gi|218242929|gb|EED09462.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
Y51MC23]
Length = 713
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P LRP+ +L RAHGSA +++G+T+VL
Sbjct: 325 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 365
>gi|384439796|ref|YP_005654520.1| Polyribonucleotide nucleotidyltransferase [Thermus sp. CCB_US3_UF1]
gi|359290929|gb|AEV16446.1| Polyribonucleotide nucleotidyltransferase [Thermus sp. CCB_US3_UF1]
Length = 714
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P LRP+ +L RAHGSA +++G+T+VL
Sbjct: 325 EGKRADGRGPRDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 365
>gi|452989450|gb|EME89205.1| hypothetical protein MYCFIDRAFT_111815, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 199
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 24 LHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYEMI 74
L RA GS+ +S G ++A ++E PE+ +IEV ++ +G G +E+ E I
Sbjct: 11 LSRADGSSVFSDGLYTIIAGVNGPVEVQRRDELPEEAAIEVNFRPSSGVGGPRERWLEGI 70
Query: 75 LKRTLQSICILTINPNTTTSVIIQV 99
+++ L+SI ++ ++P T +QV
Sbjct: 71 MQKVLRSILLVHLHPRTLFQFTVQV 95
>gi|327276287|ref|XP_003222901.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 2 [Anolis
carolinensis]
Length = 262
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 48/146 (32%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVS 52
E + D + LR + C +L R GSASW QGDT VLA E +K +
Sbjct: 4 EQKKCDSGDLPSLRRIVCEQGLLSRPDGSASWMQGDTSVLAGVYGPSEVKVSKEIYDKAT 63
Query: 53 IEVIWKSKTGQIGKQ---------------------------------------EKEYEM 73
+EV+ + K G G Q E+ E
Sbjct: 64 LEVMLRPKVGLPGLQPSLPRSAGVSPNYNSDNSIFVPEDLEVLKIKQSSEQGVYERSREQ 123
Query: 74 ILKRTLQSICILTINPNTTTSVIIQV 99
++K+T +++ + T++P ++ ++++QV
Sbjct: 124 MIKKTCEAVVLGTLHPRSSITIVLQV 149
>gi|326533940|dbj|BAJ93743.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 897
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR+ +LRP+ C IL RAHGSA +++G+T+ LA
Sbjct: 447 RSDGRSACELRPINSQCGILPRAHGSALFTRGETQALA 484
>gi|440636348|gb|ELR06267.1| hypothetical protein GMDG_02061 [Geomyces destructans 20631-21]
Length = 245
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 18 ACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQE 68
+ S LH GSA++SQ ++ A ++E PE+ +I+VI + G +E
Sbjct: 8 SAILSHLHSTDGSATFSQNGYTIIGAVNGPIEVQRRDELPEEAAIDVIVRPAAGVGSTRE 67
Query: 69 KEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+ E I++RTL+ + +++ P T V +QV
Sbjct: 68 RHLESIIERTLRQMVLISNFPRTLIQVTLQV 98
>gi|430743497|ref|YP_007202626.1| polyribonucleotide nucleotidyltransferase [Singulisphaera
acidiphila DSM 18658]
gi|430015217|gb|AGA26931.1| polyribonucleotide nucleotidyltransferase [Singulisphaera
acidiphila DSM 18658]
Length = 755
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR P LRP+ C +L RAHGSA + +G+T+ L
Sbjct: 321 RPDGRGPRDLRPIHCEVGVLPRAHGSAIFQRGETQAL 357
>gi|206901853|ref|YP_002250868.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
thermophilum H-6-12]
gi|254782719|sp|B5YEB0.1|PNP_DICT6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206740956|gb|ACI20014.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
thermophilum H-6-12]
Length = 693
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E R DGR N++RP++C +L R HGSA + +G+T+VL+
Sbjct: 312 EKRRVDGRKLNEIRPVSCEVGVLKRVHGSALFQRGETQVLS 352
>gi|95929621|ref|ZP_01312363.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
acetoxidans DSM 684]
gi|95134318|gb|EAT15975.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
acetoxidans DSM 684]
Length = 699
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR N++RP++C +L RAHGSA +++G+T+ L +
Sbjct: 313 RIDGRKMNEIRPISCEVGVLPRAHGSALFTRGETQALVS 351
>gi|410697463|gb|AFV76531.1| polyribonucleotide nucleotidyltransferase [Thermus oshimai JL-2]
Length = 714
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P LRP+ +L RAHGSA +++G+T+VL
Sbjct: 328 RADGRGPKDLRPIWIEVDVLPRAHGSAIFTRGETQVLG 365
>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
gi|254782534|sp|A2BKC0.1|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
Length = 255
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVSIE------ 54
R DGR P QLRP+ +L A GSA G T+V+AA + +P V++
Sbjct: 25 RHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIR 84
Query: 55 --------VIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ KT ++E E +++ L+++ I + P T V ++V
Sbjct: 85 CRYHMAPFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVL 138
>gi|312879870|ref|ZP_07739670.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans
DSM 12260]
gi|310783161|gb|EFQ23559.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans
DSM 12260]
Length = 756
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR ++LRP+ C +L +AHGSA +++G+T+ LA
Sbjct: 312 RADGRKMDELRPICCETGLLPKAHGSALFTRGETQSLA 349
>gi|224125980|ref|XP_002319726.1| predicted protein [Populus trichocarpa]
gi|222858102|gb|EEE95649.1| predicted protein [Populus trichocarpa]
Length = 853
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR P +RP+ C +L RAHGSA +++G+T+ LA
Sbjct: 376 RSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGETQSLA 413
>gi|383785892|ref|YP_005470461.1| polyribonucleotide nucleotidyltransferase [Fervidobacterium
pennivorans DSM 9078]
gi|383108739|gb|AFG34342.1| polyribonucleotide nucleotidyltransferase [Fervidobacterium
pennivorans DSM 9078]
Length = 694
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P +RP++C +L R HGSA +++G+T+ L
Sbjct: 321 RADGRGPKDIRPISCEVGLLPRTHGSALFTRGETQSLG 358
>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
gi|29337017|sp|Q9YC03.1|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
Length = 246
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN----------PEKVSIE 54
R DGR P LRP+ ILH A GSA G T+VLAA P++ ++
Sbjct: 17 RHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALR 76
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K+ ++E E +++ L+ + + P T V ++V
Sbjct: 77 VRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVL 130
>gi|322795793|gb|EFZ18472.1| hypothetical protein SINV_11798 [Solenopsis invicta]
Length = 220
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPE---------KVSIEVIWKSKTGQI 64
LRP+ C ++L R+ GS + QGDT ++ N E + SIEV + G
Sbjct: 12 LRPINCEINLLSRSDGSTMFMQGDTTIIVGVNGPLETRSQKMAYDRASIEVTYTPLKGPA 71
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++ E +K T +S +++ +PNT + +Q
Sbjct: 72 KIDDRLIETYIKETCESAILVSFHPNTMVCINLQ 105
>gi|346472235|gb|AEO35962.1| hypothetical protein [Amblyomma maculatum]
Length = 226
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 7 DGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIW 57
D +LR LA S L R GSA +QG+T V A E EK ++EV +
Sbjct: 2 DTSQTGRLRKLAAKFSNLSRPDGSAILAQGETVVQAGVYGPAEVKQARELHEKATVEVFF 61
Query: 58 KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
+SK+G ++ E +++ TL++ + ++P + S+ Q
Sbjct: 62 RSKSGHQSCSDRLTEKVVRSTLETAMLTALHPRSCISLTCQ 102
>gi|255569434|ref|XP_002525684.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
gi|223534984|gb|EEF36667.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
Length = 948
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGRN + +RP+ C +L RAHGSA +++G+T+ LA
Sbjct: 450 RSDGRNADGIRPINSRCGLLPRAHGSALFTRGETQSLA 487
>gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 245
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R DGR P +LR + C +L A GSA + G+TKVLAA ++E E+ ++ V
Sbjct: 10 RLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSELREEGALVV 69
Query: 56 IWKSKTG----------QIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
S + ++ E M+++ TL+ I + P + V +QV
Sbjct: 70 CEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAVITELLPRSQIDVYVQVL 124
>gi|356560353|ref|XP_003548457.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
nucleotidyltransferase-like [Glycine max]
Length = 1087
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR P+ +RP+ C +L RAHGS +++G+T+ LA
Sbjct: 440 RSDGRTPDGIRPINSRCGLLPRAHGSTLFTRGETQALA 477
>gi|356570339|ref|XP_003553347.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
nucleotidyltransferase-like [Glycine max]
Length = 916
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR P+ +RP+ C +L RAHGS +++G+T+ LA
Sbjct: 440 RSDGRTPDGIRPIYSRCGLLPRAHGSTLFTRGETQALA 477
>gi|374851060|dbj|BAL54031.1| polynucleotide phosphorylase/polyadenylase [uncultured
planctomycete]
Length = 768
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR P LRP++C +L R HGSA +++G+T+ L
Sbjct: 331 RLDGRGPKDLRPISCEVGVLPRTHGSALFTRGETQAL 367
>gi|320537764|ref|ZP_08037687.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis
F0421]
gi|320145387|gb|EFW37080.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis
F0421]
Length = 700
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGRN ++RP+ C +L R HGSA +++G+T+ LA
Sbjct: 314 RVDGRNTEEIRPITCEIGVLPRPHGSAVFTRGETQSLA 351
>gi|403253711|ref|ZP_10920012.1| polynucleotide phosphorylase/polyadenylase [Thermotoga sp. EMP]
gi|402811245|gb|EJX25733.1| polynucleotide phosphorylase/polyadenylase [Thermotoga sp. EMP]
Length = 708
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P ++RP++C + R HGSA +++G+T+ L
Sbjct: 317 RADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLG 354
>gi|148270567|ref|YP_001245027.1| polynucleotide phosphorylase/polyadenylase [Thermotoga petrophila
RKU-1]
gi|187611330|sp|A5IMM8.1|PNP_THEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|147736111|gb|ABQ47451.1| Polyribonucleotide nucleotidyltransferase [Thermotoga petrophila
RKU-1]
Length = 708
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P ++RP++C + R HGSA +++G+T+ L
Sbjct: 317 RADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLG 354
>gi|15644097|ref|NP_229146.1| polynucleotide phosphorylase/polyadenylase [Thermotoga maritima
MSB8]
gi|170289273|ref|YP_001739511.1| polynucleotide phosphorylase/polyadenylase [Thermotoga sp. RQ2]
gi|418045402|ref|ZP_12683497.1| Polyribonucleotide nucleotidyltransferase [Thermotoga maritima
MSB8]
gi|81553535|sp|Q9X166.1|PNP_THEMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704827|sp|B1LBY0.1|PNP_THESQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4981905|gb|AAD36416.1|AE001789_1 polynucleotide phosphorylase [Thermotoga maritima MSB8]
gi|170176776|gb|ACB09828.1| Polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
gi|351676287|gb|EHA59440.1| Polyribonucleotide nucleotidyltransferase [Thermotoga maritima
MSB8]
Length = 708
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P ++RP++C + R HGSA +++G+T+ L
Sbjct: 317 RADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLG 354
>gi|325971218|ref|YP_004247409.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta globus
str. Buddy]
gi|324026456|gb|ADY13215.1| Polyribonucleotide nucleotidyltransferase [Sphaerochaeta globus
str. Buddy]
Length = 702
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +Q+RP+ C +L R HGSA +++G+T+ LA
Sbjct: 316 RTDGRSVDQIRPITCEVGLLDRTHGSALFTRGETQALA 353
>gi|281412875|ref|YP_003346954.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
RKU-10]
gi|281373978|gb|ADA67540.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
RKU-10]
Length = 708
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P ++RP++C + R HGSA +++G+T+ L
Sbjct: 317 RADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLG 354
>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
Length = 246
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R DGR N+LR + C + + GSA QG+TKVLAA K N E+ +
Sbjct: 10 RLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQASSKKSNHEEAIVNC 69
Query: 56 IWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ T G+++K E + LK+ L + + + P + V I+V
Sbjct: 70 QYSMATFSTGERKKRPRGDRKSQEMTIHLKQALSAAIKMELYPRSQIDVYIEVL 123
>gi|340377098|ref|XP_003387067.1| PREDICTED: exosome complex component RRP41-like [Amphimedon
queenslandica]
Length = 243
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVSIEVIWKSK 60
R+DGR P +LR L+C S +A GSA QG+T+V+A + +K I +
Sbjct: 19 RSDGRRPQELRVLSCNISHCLQADGSAYLQQGNTRVIATVYGPHDAQHDKAFINCQFSMA 78
Query: 61 TGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
T +++K E + LK+T ++ + P++ + +Q+
Sbjct: 79 TFSTSERKKRPTGDKSCLETSLALKKTFEAAILTDTYPHSKIDIFVQIL 127
>gi|451982474|ref|ZP_21930786.1| Polyribonucleotide nucleotidyltransferase [Nitrospina gracilis
3/211]
gi|451760295|emb|CCQ92077.1| Polyribonucleotide nucleotidyltransferase [Nitrospina gracilis
3/211]
Length = 701
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR P+++RP+ C + RAHGSA +++G+T+ L
Sbjct: 314 RVDGRKPDEIRPITCQTGYVPRAHGSAIFTRGETQAL 350
>gi|291296202|ref|YP_003507600.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
gi|290471161|gb|ADD28580.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
Length = 714
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P Q+RP+ ++L + HGSA +S+G+T+VL
Sbjct: 322 ENKRADGRTPTQVRPIWIESNVLPKTHGSAIFSRGETQVLG 362
>gi|389748013|gb|EIM89191.1| hypothetical protein STEHIDRAFT_76109 [Stereum hirsutum FP-91666
SS1]
Length = 302
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
M R DGR N+ RPL+ L R GSA + G TK LA+ +E+P K
Sbjct: 1 MAQRRHDGRALNESRPLSIVYEGLDRVDGSARFGFGPTKALASVSGPIEVRLASEHPSKS 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
+ EV + + + K ++ L ILT NP T +++Q
Sbjct: 61 TFEVHLRPLSSLPSVESKSLASSIRALLSPSLILTRNPRTLIQLVVQ 107
>gi|373115896|ref|ZP_09530060.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371670054|gb|EHO35145.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 716
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVS--IEVIWK 58
+E R DGR N++RPLA +L R HGS +++G T+VL+ N + ++ IW+
Sbjct: 318 LEGHRVDGRAKNEIRPLAAEVGVLPRVHGSGLFTRGQTQVLSVCTLNTLSAAQKLDTIWE 377
Query: 59 SKTGQIGKQEKEY 71
++EK Y
Sbjct: 378 -------EEEKRY 383
>gi|357132600|ref|XP_003567917.1| PREDICTED: exosome complex component RRP41-like [Brachypodium
distachyon]
Length = 242
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------KNENPEKVSIEVIW 57
R DGR PN++R L ++ RA GSA + G+T+V+AA +N + + S E +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVSRADGSALFEMGNTRVIAAVYGPREVQNRSQQVNSKEALV 70
Query: 58 KSK-------TGQIGKQEK------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ + TG ++ K E +++++T+++ + + P++ + +QV
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIFVQVL 126
>gi|167517347|ref|XP_001743014.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778113|gb|EDQ91728.1| predicted protein [Monosiga brevicollis MX1]
Length = 256
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV---------LAAKNENPEKVSIEV 55
R DGR PNQLR L+C ++ A GSA + G T V + ++E P++ +IEV
Sbjct: 12 REDGRAPNQLRELSCDFAVNSAADGSARFRLGQTCVEVSVFGFRGVPVRSELPDRSAIEV 71
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTIN--PNTTTSVIIQV 99
++ GQ + E L+ + C L ++ P + +V V
Sbjct: 72 SFRGVGGQRKVTDAAAENFLRECVD--CALQVHEQPRSQCAVAAHV 115
>gi|365842802|ref|ZP_09383781.1| polyribonucleotide nucleotidyltransferase [Flavonifractor plautii
ATCC 29863]
gi|364574788|gb|EHM52228.1| polyribonucleotide nucleotidyltransferase [Flavonifractor plautii
ATCC 29863]
Length = 723
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVS--IEVIWK 58
+E R DGR N++RPLA +L R HGS +++G T+VL+ N + ++ IW+
Sbjct: 325 LEGHRVDGRAKNEIRPLAAEVGVLPRVHGSGLFTRGQTQVLSVCTLNTLSAAQKLDTIWE 384
Query: 59 SKTGQIGKQEKEY 71
++EK Y
Sbjct: 385 -------EEEKRY 390
>gi|297790594|ref|XP_002863182.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309016|gb|EFH39441.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 61
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 13 QLRPLACYCSILHRAHGSASWSQGDTKV 40
QLRPLAC +ILHR HGSASWS+G K+
Sbjct: 1 QLRPLACSRNILHRPHGSASWSEGIQKL 28
>gi|260655007|ref|ZP_05860495.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi
E3_33 E1]
gi|424844864|ref|ZP_18269475.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi DSM
22815]
gi|260630322|gb|EEX48516.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi
E3_33 E1]
gi|363986302|gb|EHM13132.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi DSM
22815]
Length = 756
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR +Q+RP++C +L R HGSA +++G+T LA
Sbjct: 312 RADGRATDQIRPISCEIGLLPRVHGSALFTRGETMSLA 349
>gi|401884501|gb|EJT48660.1| hypothetical protein A1Q1_02387 [Trichosporon asahii var. asahii
CBS 2479]
Length = 280
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R+DGR + LRPL L RA GS +S G + LA+ + E + ++E+
Sbjct: 2 RSDGRQDDSLRPLQVRLGELSRADGSGRFSFGPSAALASFTGPTEIRLREEQLSQATLEL 61
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
+ + G G Q + E L + + L P + +++Q
Sbjct: 62 VHRPLEGVAGVQSRALEDSLSAVFEPLLNLRAFPRSLCQIVVQ 104
>gi|406694098|gb|EKC97434.1| hypothetical protein A1Q2_08357 [Trichosporon asahii var. asahii
CBS 8904]
Length = 280
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R+DGR + LRPL L RA GS +S G + LA+ + E + ++E+
Sbjct: 2 RSDGRQDDSLRPLQVRLGELSRADGSGRFSFGPSAALASFTGPTEIRLREEQLSQATLEL 61
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
+ + G G Q + E L + + L P + +++Q
Sbjct: 62 VHRPLEGVAGVQSRALEDSLSAVFEPLLNLRAFPRSLCQIVVQ 104
>gi|449510334|ref|XP_002198831.2| PREDICTED: exosome complex component RRP46-like, partial
[Taeniopygia guttata]
Length = 208
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 30 SASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYEMILKRTLQ 80
S + GDT VLA E P++ +++V+ + K G G E+ E +L++T +
Sbjct: 17 SPALCPGDTSVLAGLYGPAEAKISKELPDRAALDVLLRPKVGLPGVLERSREQLLQQTCE 76
Query: 81 SICILTINPNTTTSVIIQVW 100
++ + ++P T S+++QV
Sbjct: 77 AVVLGVLHPRTAISLVLQVL 96
>gi|357419561|ref|YP_004932553.1| polyribonucleotide nucleotidyltransferase [Thermovirga lienii DSM
17291]
gi|355397027|gb|AER66456.1| polyribonucleotide nucleotidyltransferase [Thermovirga lienii DSM
17291]
Length = 745
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E RADGR +++RP++C +L R HGSA +++G+T+ L
Sbjct: 309 EGKRADGRRTDEIRPISCKVGVLPRTHGSAIFTRGETQAL 348
>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
Length = 243
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------KNEN---PEKVSIE 54
R DGR P ++R L ++ +A GSA + G+TKV+AA +N+N P++ +
Sbjct: 10 RLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAVYGPHEVQNKNQQLPDQALVR 69
Query: 55 VIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ G + + E +++++T+++ + + P T + +QV
Sbjct: 70 CEYSMANFSTGDRPRRSKGDRRATEISLVIRQTMEATILTHLMPRTQIDIFVQVL 124
>gi|327399809|ref|YP_004340678.1| polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
10411]
gi|327182438|gb|AEA34619.1| Polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
10411]
Length = 703
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RP+ C +L RAHGSA +++G+T+ L A
Sbjct: 315 RIDGRGLDEIRPITCEVGVLPRAHGSAVFTRGETQALVA 353
>gi|383790727|ref|YP_005475301.1| polyribonucleotide nucleotidyltransferase [Spirochaeta africana DSM
8902]
gi|383107261|gb|AFG37594.1| polyribonucleotide nucleotidyltransferase [Spirochaeta africana DSM
8902]
Length = 715
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+ +RP+ C +L R HG+A +++G+T+ LA
Sbjct: 315 RTDGRAPDGIRPITCEIDVLPRTHGAALFTRGETQALA 352
>gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
Length = 714
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P LRP+ +L R HGSA +++G+T+VL
Sbjct: 325 EGKRADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGETQVLG 365
>gi|339319753|ref|YP_004679448.1| polyribonucleotide nucleotidyltransferase [Candidatus Midichloria
mitochondrii IricVA]
gi|338225878|gb|AEI88762.1| polyribonucleotide nucleotidyltransferase [Candidatus Midichloria
mitochondrii IricVA]
Length = 780
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN Q+RP+ C +L RAHGSA +++G+T+ L
Sbjct: 310 RIDGRNLEQIRPINCELDLLPRAHGSALFTRGETQAL 346
>gi|313680573|ref|YP_004058312.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
DSM 14977]
gi|313153288|gb|ADR37139.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
DSM 14977]
Length = 721
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P ++RP+ +L R+HGSA +++G+T+VL
Sbjct: 323 EKKRADGRGPAEIRPIWIEVDVLPRSHGSAIFTRGETQVLG 363
>gi|218884635|ref|YP_002429017.1| putative exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
Length = 242
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVSI--EVIWK 58
R DGR P +LRP+ +L A+GSA G+TK LAA + P+ +S+ I +
Sbjct: 13 RIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAILR 72
Query: 59 ------------SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
K+ ++E E +++ L+S+ + P + V I++
Sbjct: 73 VRYHMAPFSTTERKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEIL 126
>gi|294101702|ref|YP_003553560.1| polyribonucleotide nucleotidyltransferase [Aminobacterium
colombiense DSM 12261]
gi|293616682|gb|ADE56836.1| polyribonucleotide nucleotidyltransferase [Aminobacterium
colombiense DSM 12261]
Length = 748
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E +RADGR +++RP+ C +L R HGSA +++G+T+ L
Sbjct: 309 ERERADGRAMDEIRPITCEVGVLPRVHGSALFTRGETQAL 348
>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
Length = 242
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------------KNENPEKV 51
R DGR PN++R L I+ RA GSA + G+T+V+AA N N V
Sbjct: 11 RVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEALV 70
Query: 52 SIEV-IWKSKTGQIGKQEK------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
E + + TG ++ K E +++++T+++ + + P++ + +QV
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVL 126
>gi|390939121|ref|YP_006402859.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
gi|390192228|gb|AFL67284.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
Length = 242
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVSI--EVIWK 58
R DGR P +LRP+ +L A+GSA G+TK LAA + P+ +S+ I +
Sbjct: 13 RIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAILR 72
Query: 59 ------------SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
K+ ++E E +++ L+S+ + P + V I++
Sbjct: 73 VRYHMAPFSTTERKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEIL 126
>gi|406862492|gb|EKD15542.1| exosome complex subunit Rrp46 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 247
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 22 SILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYE 72
S LHR GSA++SQ V+ A ++E PE+ +I+V+ + G +E+ E
Sbjct: 12 SHLHRTDGSATFSQNGYTVIGAVNGPLEIQRRDELPEEAAIDVLVRPAAGVGSTRERHLE 71
Query: 73 MILKRTLQSICILTINPNTTTSVIIQV 99
IL+ TL+ I ++ P + + +Q+
Sbjct: 72 SILQSTLRHIVLIHNFPRSLIQITLQI 98
>gi|257096733|sp|A1R0N0.2|PNP_BORT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 717
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGRNP Q+R + +L R HGSA +++G+T+ LA
Sbjct: 316 RTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALA 353
>gi|119953582|ref|YP_945792.1| polynucleotide phosphorylase/polyadenylase [Borrelia turicatae
91E135]
gi|119862353|gb|AAX18121.1| polyribonucleotide nucleotidyltransferase [Borrelia turicatae
91E135]
Length = 727
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGRNP Q+R + +L R HGSA +++G+T+ LA
Sbjct: 326 RTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALA 363
>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
Hrk 5]
Length = 245
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNEN-PEKVSIE 54
R DGR P+++RPL +L A GSA G+ KVLAA ++E P++ ++
Sbjct: 16 RVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAVYGPREPMPRHEALPDRAILK 75
Query: 55 --------VIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ + K+ Q ++E E +++ L L P T+ V I +
Sbjct: 76 CRYSMLPFSVAERKSPQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIHIL 129
>gi|302338543|ref|YP_003803749.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
DSM 11293]
gi|301635728|gb|ADK81155.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
DSM 11293]
Length = 697
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RP+ C IL RAHGSA +++G+T+ LA
Sbjct: 313 RTDGRDLETVRPITCEVGILDRAHGSALFTRGETQSLA 350
>gi|373121355|ref|ZP_09535223.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
bacterium 21_3]
gi|422327371|ref|ZP_16408398.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
bacterium 6_1_45]
gi|371663211|gb|EHO28401.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
bacterium 6_1_45]
gi|371665373|gb|EHO30538.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
bacterium 21_3]
Length = 725
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR +++RPL IL RAHGSA +++G+T+VL+ P
Sbjct: 320 RPDGRKVDEIRPLDSQVDILPRAHGSALFTRGETQVLSVTTLGP 363
>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
Length = 241
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSKTGQI 64
R DGR N+LR + + A GSA + QGDTKV+A N + V K G
Sbjct: 11 REDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQGV-------GKAGDA 63
Query: 65 GKQEKEYEMILKRTLQ 80
GK ++EM T Q
Sbjct: 64 GKVVCDFEMAAFSTTQ 79
>gi|383787980|ref|YP_005472548.1| polyribonucleotide nucleotidyltransferase [Caldisericum exile
AZM16c01]
gi|381363616|dbj|BAL80445.1| polyribonucleotide nucleotidyltransferase [Caldisericum exile
AZM16c01]
Length = 708
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 31/42 (73%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
++ +R DGR P+++RP++ +L R HGSA +++G T+VL+
Sbjct: 308 LQGNRIDGRKPDEIRPISIEVGVLKRTHGSALFTRGQTQVLS 349
>gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
Length = 245
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 19/115 (16%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R DGR P +LR + C +L A GSA + G+TKVLAA + + E +I V
Sbjct: 10 RLDGRRPRELRRINCQLDVLSSADGSAIFEMGNTKVLAAVFGPHAVTKRADLREDAAIVV 69
Query: 56 IWKSKTG----------QIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
S + ++ E M+++ TL+ + + P + V +QV
Sbjct: 70 CEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAILRELMPRSQIDVYVQVL 124
>gi|357625482|gb|EHJ75909.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 251
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR PN+LR + C + + GSA QG+TKVLAA + + E V +
Sbjct: 13 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQVRRFRKSSAEGVVVN 72
Query: 55 VIWKSKTGQIG---------KQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+ T G ++ +E M L++ L + + P + + ++V
Sbjct: 73 CQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYVEV 126
>gi|313901029|ref|ZP_07834517.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2]
gi|312953987|gb|EFR35667.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2]
Length = 736
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR +++RPL IL RAHGSA +++G+T+VL+ P
Sbjct: 331 RPDGRKVDEIRPLDSQVDILPRAHGSALFTRGETQVLSVTTLGP 374
>gi|347542470|ref|YP_004857107.1| polyribonucleotide nucleotidyltransferase [Candidatus Arthromitus
sp. SFB-rat-Yit]
gi|346985506|dbj|BAK81181.1| polyribonucleotide nucleotidyltransferase [Candidatus Arthromitus
sp. SFB-rat-Yit]
Length = 705
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
E R DGRN +++RP++C SIL R HG+ +++G T+VL P
Sbjct: 309 EKRRPDGRNFDEIRPISCDVSILPRTHGTGLFTRGLTQVLTIATLGP 355
>gi|297617194|ref|YP_003702353.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus
lipocalidus DSM 12680]
gi|297145031|gb|ADI01788.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus
lipocalidus DSM 12680]
Length = 717
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR N++RP++C IL R HGS +++G T+VL+
Sbjct: 313 RVDGRRLNEIRPVSCEVGILPRTHGSGLFTRGQTQVLS 350
>gi|346314352|ref|ZP_08855873.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906710|gb|EGX76434.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 725
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR +++RPL IL RAHGSA +++G+T+VL+ P
Sbjct: 320 RPDGRKIDEIRPLDSQVDILPRAHGSALFTRGETQVLSVTTLGP 363
>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
gi|194692034|gb|ACF80101.1| unknown [Zea mays]
gi|413948419|gb|AFW81068.1| exosome complex exonuclease RRP41 isoform 1 [Zea mays]
gi|413948420|gb|AFW81069.1| exosome complex exonuclease RRP41 isoform 2 [Zea mays]
gi|413948421|gb|AFW81070.1| exosome complex exonuclease RRP41 isoform 3 [Zea mays]
gi|413948422|gb|AFW81071.1| exosome complex exonuclease RRP41 isoform 4 [Zea mays]
Length = 242
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------KNENPEKVSIEVIW 57
R DGR PN++R L ++ RA GSA + G+T+V+AA +N+ + S E +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALV 70
Query: 58 KSK-------TGQIGKQEK------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ + TG ++ K E +++++T+++ + + P++ + +QV
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVL 126
>gi|154249089|ref|YP_001409914.1| polynucleotide phosphorylase/polyadenylase [Fervidobacterium
nodosum Rt17-B1]
gi|187610262|sp|A7HK24.1|PNP_FERNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154153025|gb|ABS60257.1| Polyribonucleotide nucleotidyltransferase [Fervidobacterium nodosum
Rt17-B1]
Length = 693
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P +RP+ C +L R HGS+ +++G+T+ L
Sbjct: 319 RADGRGPKDIRPITCEVGLLPRTHGSSLFTRGETQSLG 356
>gi|58266526|ref|XP_570419.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110532|ref|XP_776093.1| hypothetical protein CNBD1410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258761|gb|EAL21446.1| hypothetical protein CNBD1410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226652|gb|AAW43112.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 308
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R DGR P QLRPL L RA GSA ++ G VLA+ + E P+K + EV
Sbjct: 18 RPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDKATFEV 77
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
+ G + L+ I L +P + +++Q
Sbjct: 78 NHRPLEGVGATPSRALVTTLETIFPPILSLEKHPRSLVQLVVQ 120
>gi|374852729|dbj|BAL55655.1| polyribonucleotide nucleotidyltransferase [uncultured Chloroflexi
bacterium]
Length = 743
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
+E R DGR P +RP+ C I RAHGS +++G+T+VL
Sbjct: 312 LEGKRPDGRGPKDIRPIWCEVDIAPRAHGSGLFTRGETQVL 352
>gi|413948423|gb|AFW81072.1| hypothetical protein ZEAMMB73_833729 [Zea mays]
Length = 236
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------KNENPEKVSIEVIW 57
R DGR PN++R L ++ RA GSA + G+T+V+AA +N+ + S E +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALV 70
Query: 58 KSK-------TGQIGKQEK------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ + TG ++ K E +++++T+++ + + P++ + +QV
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVL 126
>gi|347524281|ref|YP_004781851.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
gi|343461163|gb|AEM39599.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
Length = 248
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 3 IDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVS 52
I R DGR P++LRP+ +L A GSA G T+V+AA P++
Sbjct: 19 IVRHDGRAPDELRPIRMEVGVLSNADGSAYVEFGRTRVIAAVYGPREVHPKHMALPDRAL 78
Query: 53 IEVIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
I + + K+ ++E E +++ L+ + + P TT + I+V
Sbjct: 79 IRCRYHMAPFSTDERKSPAPTRREIELSKVIREALEPVVFTELYPRTTIDIFIEV 133
>gi|117926996|ref|YP_867613.1| polynucleotide phosphorylase/polyadenylase [Magnetococcus marinus
MC-1]
gi|187610282|sp|A0LE14.1|PNP_MAGSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117610752|gb|ABK46207.1| Polyribonucleotide nucleotidyltransferase [Magnetococcus marinus
MC-1]
Length = 701
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+AC SIL R HG+A +++G+T+ +A
Sbjct: 318 RVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIA 355
>gi|347967317|ref|XP_308011.5| AGAP002177-PA [Anopheles gambiae str. PEST]
gi|333466351|gb|EAA03766.5| AGAP002177-PA [Anopheles gambiae str. PEST]
Length = 226
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 10 NPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSK 60
N LR + C ++L R+ SA+ SQG T+V+ A KN E +EV ++S
Sbjct: 11 NSLNLRRMVCETNVLSRSDCSAALSQGATQVMVAANGPAEVKFKNAESENCHLEVQYRSN 70
Query: 61 TGQIGKQEKEYEMILKRTL 79
GQ Q + E ++KR+
Sbjct: 71 AGQEDIQHRLMESLIKRSF 89
>gi|160932224|ref|ZP_02079615.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753]
gi|156868826|gb|EDO62198.1| polyribonucleotide nucleotidyltransferase [Clostridium leptum DSM
753]
Length = 733
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
E R DGR +Q+RPLA +L R HGS +++G T+V+ A P
Sbjct: 312 EQKRVDGRAMDQMRPLAAEVGLLPRVHGSGMFTRGQTQVITAATLGP 358
>gi|221119375|ref|XP_002161086.1| PREDICTED: exosome complex component RRP46-like [Hydra
magnipapillata]
Length = 221
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
+R + C + L + GS + S G TKV++A E +K +I I K K G
Sbjct: 1 MREMECNLAYLEKPDGSVTLSHGQTKVISAVYGPVEVKMNKEITDKATIICILKPKIGMS 60
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+EK E I+ +T + I +++P + V++Q+
Sbjct: 61 AVKEKVMEKIVAKTCEQAIIASLHPRSAIQVVLQI 95
>gi|392406972|ref|YP_006443580.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum mobile DSM
13181]
gi|390620108|gb|AFM21255.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum mobile DSM
13181]
Length = 737
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E RADGR ++LRP+ C L R HGSA +++G+T+ L
Sbjct: 311 EGKRADGRAMDELRPITCEVGFLPRVHGSAVFTRGETQAL 350
>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
gi|29337007|sp|Q9UXC2.1|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
Length = 248
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVS------IE 54
R DGR P++LR + +L A GSA + G+TK +AA K +P +S +
Sbjct: 19 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 78
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ + P T V ++
Sbjct: 79 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEIL 132
>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
Length = 243
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN----------PEKVSIE 54
R DGR P++LRP+ +L A GSA G+TK+LAA P + +
Sbjct: 16 RLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ P T+ V ++V
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVL 129
>gi|154497054|ref|ZP_02035750.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC
29799]
gi|150273453|gb|EDN00581.1| putative polyribonucleotide nucleotidyltransferase
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 716
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVS--IEVIWKSKTG 62
R DGR N++RPL+ +L + HGS +++G T+VL+ N S ++ IW+
Sbjct: 322 RVDGRAKNEIRPLSAEVGVLPKVHGSGLFTRGQTQVLSVATLNTLAASQKLDTIWE---- 377
Query: 63 QIGKQEKEY 71
++EK Y
Sbjct: 378 ---EEEKRY 383
>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
gi|384434251|ref|YP_005643609.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
Length = 245
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVS------IE 54
R DGR P++LR + +L A GSA + G+TK +AA K +P +S +
Sbjct: 16 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ + P T V ++
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEIL 129
>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
gi|407943802|pdb|4BA1|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943805|pdb|4BA2|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 250
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVS------IE 54
R DGR P++LR + +L A GSA + G+TK +AA K +P +S +
Sbjct: 21 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 80
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ + P T V ++
Sbjct: 81 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEIL 134
>gi|365131232|ref|ZP_09341799.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum sp.
4_3_54A2FAA]
gi|363618898|gb|EHL70235.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum sp.
4_3_54A2FAA]
Length = 710
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
E R DGR N++RPLA +L R HGS +++G T+VL A
Sbjct: 320 EGKRVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTA 361
>gi|303273102|ref|XP_003055912.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461996|gb|EEH59288.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 823
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ +RP++C LHR HGS+ +++G+T+ +AA
Sbjct: 376 RQDGRDVYTVRPISCEGGFLHRTHGSSLFTRGETQAIAA 414
>gi|308272445|emb|CBX29049.1| Polyribonucleotide nucleotidyltransferase [uncultured
Desulfobacterium sp.]
Length = 697
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKN--ENPEKVSIEVI 56
R DGR +++RP+ C +L R HGSA +++G+T+VLA P++ +E +
Sbjct: 312 RIDGRKFDEIRPITCEVGLLPRPHGSALFTRGETQVLAVLTLGSGPDEQRVETL 365
>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
Length = 249
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN----------PEKVSIE 54
R DGR ++LRP+ +L A+GSA G TKVLAA P++ ++
Sbjct: 20 RLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRATLR 79
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K+ ++E E +++ L+S+ P T+ + I+V
Sbjct: 80 VRYHMAPFSTSERKSPAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVL 133
>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
Length = 243
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKN 45
R DGR P ++R C +L RA GSA QG+TK LA+ N
Sbjct: 10 RIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASIN 50
>gi|406983761|gb|EKE04921.1| hypothetical protein ACD_19C00429G0081 [uncultured bacterium]
Length = 778
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 15/72 (20%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSKTGQI 64
R DGR ++RPL+ S L R HGS +++G T+VL SI + ++ GQ+
Sbjct: 313 RPDGRKLTEIRPLSSEVSFLPRTHGSGLFTRGQTQVL----------SIATLGSTQMGQL 362
Query: 65 -----GKQEKEY 71
G+QEK Y
Sbjct: 363 LETAEGEQEKRY 374
>gi|386002838|ref|YP_005921137.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
gi|357210894|gb|AET65514.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
Length = 251
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENP---EKVSIEVI- 56
R DGR P++LRP+ +L RA GS GD KV+AA + +P ++V+ ++
Sbjct: 13 RLDGRRPDELRPIKIEVGVLERADGSCYIEMGDNKVIAAVYGPREVHPRHLQEVTRAIVR 72
Query: 57 WKSKTGQI--------GKQEKEYEM--ILKRTLQSICILTINPNTTTSVIIQVW 100
++ G + YE+ + + L S+ + + P + + ++V
Sbjct: 73 YRYNMASFSVEERKRPGPDRRSYEVSKVSREALASVILTSYFPRSVVDIFVEVL 126
>gi|15233167|ref|NP_191721.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|186511299|ref|NP_001118878.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
Length = 241
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 21/116 (18%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA--------------KNENPEK 50
R DGR N++R + ++ +A GSA + G+TKV+AA KN++
Sbjct: 10 RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVV 69
Query: 51 VSIEVIWKSKTG-----QIGKQEKEYEMILKRTLQSICILT-INPNTTTSVIIQVW 100
+ + + TG + ++ E +++++T+++ CILT + P++ + +QV
Sbjct: 70 LCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEA-CILTELMPHSQIDIFLQVL 124
>gi|328953964|ref|YP_004371298.1| polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
DSM 11109]
gi|328454288|gb|AEB10117.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
DSM 11109]
Length = 711
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RP++C +L R HGSA +S+G+T+ LA
Sbjct: 324 RIDGRSYTDIRPISCEVGLLSRTHGSALFSRGETQALA 361
>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 21/116 (18%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA--------------KNENPEK 50
R DGR N++R + ++ +A GSA + G+TKV+AA KN++
Sbjct: 10 RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVV 69
Query: 51 VSIEVIWKSKTG-----QIGKQEKEYEMILKRTLQSICILT-INPNTTTSVIIQVW 100
+ + + TG + ++ E +++++T+++ CILT + P++ + +QV
Sbjct: 70 LCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEA-CILTELMPHSQIDIFLQVL 124
>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
Length = 249
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R DGR P++LR + C + + GSA QG+TKVLAA K V I
Sbjct: 14 RLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTESNDVIINC 73
Query: 56 IWKSKTGQIG---------KQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ T ++ +E++M L++ L + + P + V ++V
Sbjct: 74 QYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVL 127
>gi|417966673|ref|ZP_12607982.1| Polyribonucleotide nucleotidyltransferase, partial [Candidatus
Arthromitus sp. SFB-5]
gi|380340351|gb|EIA28960.1| Polyribonucleotide nucleotidyltransferase, partial [Candidatus
Arthromitus sp. SFB-5]
Length = 173
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR+ +++RP++C SIL R HG+ +++G T+VL P
Sbjct: 43 RPDGRDFDEIRPISCDISILPRTHGTGLFTRGLTQVLTIATLGP 86
>gi|332796516|ref|YP_004458016.1| 3' exoribonuclease [Acidianus hospitalis W1]
gi|332694251|gb|AEE93718.1| 3' exoribonuclease [Acidianus hospitalis W1]
Length = 276
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
RADGR N+ RPL+ S +A GSA GDT VLA PE+
Sbjct: 28 RADGRKFNEYRPLSITLSYAKKADGSALVKLGDTTVLAGVKVEPEE 73
>gi|288574757|ref|ZP_06393114.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570498|gb|EFC92055.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 749
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR ++LR L+C +L + HGSA +++G+T+ LA
Sbjct: 309 EKRRADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLA 349
>gi|332654600|ref|ZP_08420343.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae
bacterium D16]
gi|332516564|gb|EGJ46170.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae
bacterium D16]
Length = 716
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKV--SIEVIWK 58
+E R DGR N++RPLA +L R HGS +++G T+VL+ N ++ IW+
Sbjct: 318 LEGHRVDGRAKNEIRPLAAEVGVLPRVHGSGLFTRGQTQVLSVCTLNTLAACQKLDTIWE 377
>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
Length = 242
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------------KNENPEKV 51
R DGR PN++R L ++ RA GSA + G+T+V+AA N N V
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEALV 70
Query: 52 SIEV-IWKSKTGQIGKQEK------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
E + + TG ++ K E +++++T+++ + + P + + +QV
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIYVQVL 126
>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 245
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 19/115 (16%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR P + R + C +L A GSA + G+T+V+ A + E+ I+
Sbjct: 10 RLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGERDDERAIIK 69
Query: 55 VIW---------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ + G+ ++ E +++++ L++ ++ + P + +V+IQV
Sbjct: 70 CEFSQAAFSTGERRARGKGDRRSVELALVIRQALEATVLVHLAPRSEINVMIQVL 124
>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
Length = 242
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR PN++R L ++ RA GSA + G+T+V+AA + N + +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKDALV 70
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
++ G + + E +++++T+++ + + P + + +QV
Sbjct: 71 RCEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQVL 126
>gi|414591466|tpg|DAA42037.1| TPA: hypothetical protein ZEAMMB73_693356 [Zea mays]
Length = 265
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 73 MILKRTLQSICILTINPNTTTSVIIQV 99
M LKRTLQSIC+LT++ NTTTSV++Q
Sbjct: 1 MTLKRTLQSICLLTVHANTTTSVVLQA 27
>gi|357626143|gb|EHJ76339.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 214
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R DGR PN+LR + C + + GSA QG+TKVLAA + E V +
Sbjct: 13 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKSSAEGVVVNC 72
Query: 56 IWKSKTGQIG---------KQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+ T G ++ +E M L++ L + + P + + ++V
Sbjct: 73 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYVEV 125
>gi|319789227|ref|YP_004150860.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
ammonificans HB-1]
gi|317113729|gb|ADU96219.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
ammonificans HB-1]
Length = 714
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKN-ENPEKVSIEVIWKSKTGQ 63
R DGR P+++RP++ +L RAHGSA +++G T+ L PE+ ++ G
Sbjct: 312 RIDGRKPDEIRPISIEVGLLPRAHGSALFTRGQTQALVTTTLGTPEE------YQLVEGL 365
Query: 64 IGKQEKEYEMILKRTLQSICILTINP 89
+ +++K + +L C+ I+P
Sbjct: 366 MPEEQKRF--MLHYNFPPFCVGEISP 389
>gi|282855612|ref|ZP_06264926.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens
W5455]
gi|282586542|gb|EFB91796.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens
W5455]
Length = 751
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 29/37 (78%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGR +++RP++C ++L + HGSA +++G+T+ L
Sbjct: 312 RADGRATDEIRPISCEVNVLPKVHGSALFTRGETQAL 348
>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
Length = 245
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVS------IE 54
R DGR P++LR + +L A GSA + G+TK +AA K +P +S +
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ + P T V ++
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEIL 129
>gi|189424733|ref|YP_001951910.1| polynucleotide phosphorylase/polyadenylase [Geobacter lovleyi SZ]
gi|257096692|sp|B3EAF2.1|PNP_GEOLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189420992|gb|ACD95390.1| Polyribonucleotide nucleotidyltransferase [Geobacter lovleyi SZ]
Length = 703
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ +RP+A +L RAHGS +++G+T+VLAA
Sbjct: 315 RIDGRDTKTVRPIAIEAGLLPRAHGSTLFTRGETQVLAA 353
>gi|312377314|gb|EFR24174.1| hypothetical protein AND_11431 [Anopheles darlingi]
Length = 269
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR + C +IL R+ SA+ SQG T+V+ + +N E +EV ++S G
Sbjct: 7 LRRMICETNILSRSDCSAALSQGATQVMVSANGPAEVKLRNAESENAHLEVQYRSNAGLE 66
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
Q + E ++KR+ + T P + V +Q
Sbjct: 67 DIQNRLVESLIKRSFVRVVASTAFPRSAVYVFVQ 100
>gi|295103372|emb|CBL00916.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Faecalibacterium prausnitzii SL3/3]
Length = 441
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR N++RPLA IL R HGS +++G T+VL
Sbjct: 319 EGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVL 358
>gi|315502540|ref|YP_004081427.1| guanosine pentaphosphate synthetase i/polyribonucleotide
nucleotidyltransferase [Micromonospora sp. L5]
gi|315409159|gb|ADU07276.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Micromonospora sp. L5]
Length = 789
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +RPL+ +L R HGSA + +G+T++L N
Sbjct: 341 RIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQILGVTTLN 383
>gi|302865980|ref|YP_003834617.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Micromonospora aurantiaca ATCC
27029]
gi|302568839|gb|ADL45041.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Micromonospora aurantiaca ATCC
27029]
Length = 796
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +RPL+ +L R HGSA + +G+T++L N
Sbjct: 341 RIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQILGVTTLN 383
>gi|238063392|ref|ZP_04608101.1| polyribonucleotide nucleotidyltransferase [Micromonospora sp. ATCC
39149]
gi|237885203|gb|EEP74031.1| polyribonucleotide nucleotidyltransferase [Micromonospora sp. ATCC
39149]
Length = 548
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +RPL+ +L R HGSA + +G+T++L N
Sbjct: 341 RIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQILGVTTLN 383
>gi|385775987|ref|YP_005648555.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
Length = 245
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVS------IE 54
R DGR P++LR + +L A GSA + G+TK +AA K +P +S +
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ + P T V ++
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEIL 129
>gi|1588265|prf||2208281A 100RNP protein
Length = 779
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR +RP+ C +L RAHGSA +++G+T+ LA
Sbjct: 435 RSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALA 472
>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
Length = 245
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVS------IE 54
R DGR P++LR + +L A GSA + G+TK +AA K +P +S +
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ + P T V ++
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEIL 129
>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
Length = 245
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVS------IE 54
R DGR P++LR + +L A GSA + G+TK +AA K +P +S +
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ + P T V ++
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEIL 129
>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
Length = 242
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------KNENPEKVSIEVIW 57
R DGR PN++R L ++ RA GSA + G+T+V+AA +N+ + S E +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALV 70
Query: 58 KSK-------TGQIGKQEK------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ + TG ++ K E +++++T+++ + + P++ + +QV
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVL 126
>gi|51599057|ref|YP_073245.1| polynucleotide phosphorylase/polyadenylase [Borrelia garinii PBi]
gi|51573628|gb|AAU07653.1| polyribonucleotide nucleotidyltransferase [Borrelia garinii PBi]
Length = 715
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 310 RTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALA 347
>gi|408671409|ref|YP_006871480.1| polynucleotide phosphorylase/polyadenylase [Borrelia garinii NMJW1]
gi|407241231|gb|AFT84114.1| polynucleotide phosphorylase/polyadenylase [Borrelia garinii NMJW1]
Length = 707
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 302 RTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALA 339
>gi|219684925|ref|ZP_03539866.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia garinii PBr]
gi|219671663|gb|EED28719.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia garinii PBr]
Length = 721
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALA 353
>gi|187471096|sp|Q65ZW8.2|PNP_BORGA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 721
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALA 353
>gi|182414231|ref|YP_001819297.1| polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1]
gi|257096699|sp|B1ZS98.1|PNP_OPITP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|177841445|gb|ACB75697.1| Polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1]
Length = 730
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
RADGR +RPL +L R HGSA + +GDT+ +A P K
Sbjct: 316 RADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTLGPTK 361
>gi|224531821|ref|ZP_03672453.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia valaisiana
VS116]
gi|224511286|gb|EEF81692.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia valaisiana
VS116]
Length = 722
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALA 353
>gi|297566425|ref|YP_003685397.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM
9946]
gi|296850874|gb|ADH63889.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM
9946]
Length = 718
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR Q+RP+ +L RAHGSA +++G+T+VL
Sbjct: 326 ENRRADGRTNTQVRPIWIEADVLPRAHGSAVFARGETQVLG 366
>gi|1924972|gb|AAC49669.1| polyribonucleotide phophorylase [Spinacia oleracea]
Length = 822
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR +RP+ C +L RAHGSA +++G+T+ LA
Sbjct: 437 RSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALA 474
>gi|422343747|ref|ZP_16424674.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia F0398]
gi|355378163|gb|EHG25354.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia F0398]
Length = 689
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C IL RAHGS +++G T+VL
Sbjct: 311 RPDGRALDEIRPVSCEVGILPRAHGSGLFTRGQTQVL 347
>gi|239618017|ref|YP_002941339.1| polynucleotide phosphorylase/polyadenylase [Kosmotoga olearia TBF
19.5.1]
gi|197321135|gb|ACH68639.1| polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
19.5.1]
gi|239506848|gb|ACR80335.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
19.5.1]
Length = 737
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR ++RP+ C IL R HGSA +++G+T+ LA
Sbjct: 324 RMDGRKTTEIRPITCELDILPRTHGSALFTRGETQSLA 361
>gi|292670908|ref|ZP_06604334.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC
43541]
gi|292647529|gb|EFF65501.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC
43541]
Length = 700
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C IL RAHGS +++G T+VL
Sbjct: 322 RPDGRALDEIRPVSCEVGILPRAHGSGLFTRGQTQVL 358
>gi|386854203|ref|YP_006203488.1| PnpA [Borrelia garinii BgVir]
gi|365194237|gb|AEW69135.1| PnpA [Borrelia garinii BgVir]
Length = 715
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 310 RTDGRTPNEIRDILAEVDILSRTHGSALFTRGETQALA 347
>gi|313115448|ref|ZP_07800916.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622242|gb|EFQ05729.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 716
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR N++RPLA IL R HGS +++G T+VL
Sbjct: 319 EGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVL 358
>gi|224534158|ref|ZP_03674738.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii
A14S]
gi|224514583|gb|EEF84897.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii
A14S]
Length = 724
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDILAEVDILSRTHGSALFTRGETQALA 353
>gi|333994688|ref|YP_004527301.1| polyribonucleotide nucleotidyltransferase [Treponema azotonutricium
ZAS-9]
gi|333734589|gb|AEF80538.1| polyribonucleotide nucleotidyltransferase [Treponema azotonutricium
ZAS-9]
Length = 723
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+ C IL R HGSA +++G+T+ LA
Sbjct: 314 RVDGRGTEDIRPINCEVGILARTHGSALFTRGETQALA 351
>gi|406919637|gb|EKD57877.1| hypothetical protein ACD_57C00115G0004 [uncultured bacterium]
Length = 755
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RP+ S+L R HGS + +G+T+VL+
Sbjct: 335 RTDGRTPDEIRPITAKVSLLPRTHGSGLFQRGETQVLS 372
>gi|295102740|emb|CBL00285.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii L2-6]
Length = 714
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR N++RPLA IL R HGS +++G T+VL
Sbjct: 319 EGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVL 358
>gi|443707474|gb|ELU03042.1| hypothetical protein CAPTEDRAFT_117513 [Capitella teleta]
Length = 124
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKN--ENPEKVSIEVIWKS--- 59
R GR PN+LR + C + + GSA QG+TKVLAA + P S + + S
Sbjct: 16 RVHGRKPNELRRIQCRMGVYSQTDGSAYIEQGNTKVLAAVHGLHEPATSSSILAFPSYIS 75
Query: 60 --------KTGQIGKQEKEYEMI--LKRTLQSICILTINPNTTTSV 95
G +G ++K EM+ LK+T+++ + + P + +
Sbjct: 76 HQYSMAVFSAGDVGGRKKLIEMMLHLKQTIEASILTHLCPRSQIDI 121
>gi|410667487|ref|YP_006919858.1| polyribonucleotide nucleotidyltransferase Pnp [Thermacetogenium
phaeum DSM 12270]
gi|409105234|gb|AFV11359.1| polyribonucleotide nucleotidyltransferase Pnp [Thermacetogenium
phaeum DSM 12270]
Length = 707
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR ++RP++C IL RAHGS +++G T+VL
Sbjct: 314 RPDGRGLEEIRPISCEVGILPRAHGSGLFTRGQTQVL 350
>gi|160944532|ref|ZP_02091760.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
M21/2]
gi|158444314|gb|EDP21318.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii M21/2]
Length = 713
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR N++RPLA IL R HGS +++G T+VL
Sbjct: 319 EGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVL 358
>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
Length = 242
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN----------PEKVSIE 54
R DGR P + RP+ +L A+GSA + G+T VLAA P+K +
Sbjct: 15 RVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKAVVR 74
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
V + K ++E E ++K+ L+++ L P +T V ++V
Sbjct: 75 VRYHMAPFSTDDRKNPAPTRREIEISKVVKQALETVVFLEQYPKSTIDVFLEV 127
>gi|83589904|ref|YP_429913.1| polynucleotide phosphorylase/polyadenylase [Moorella thermoacetica
ATCC 39073]
gi|123524642|sp|Q2RJL9.1|PNP_MOOTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|83572818|gb|ABC19370.1| Polyribonucleotide nucleotidyltransferase [Moorella thermoacetica
ATCC 39073]
Length = 747
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR ++RP+ C +L R HGS +++G+T+VL P
Sbjct: 331 RVDGRTLEEIRPITCEVGVLSRTHGSGLFTRGETQVLTVTTLGP 374
>gi|257439280|ref|ZP_05615035.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii A2-165]
gi|257198155|gb|EEU96439.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii A2-165]
Length = 714
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR N++RPLA IL R HGS +++G T+VL
Sbjct: 319 EGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVL 358
>gi|383782123|ref|YP_005466690.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase alpha chain [Actinoplanes
missouriensis 431]
gi|381375356|dbj|BAL92174.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
nucleotidyltransferase alpha chain [Actinoplanes
missouriensis 431]
Length = 779
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +RPL +L R HGSA + +G+T++L N
Sbjct: 343 RIDGRGPRDIRPLTAQVGVLPRVHGSALFERGETQILGVTTLN 385
>gi|402301922|ref|ZP_10821044.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. FOBRC9]
gi|400381307|gb|EJP34109.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. FOBRC9]
Length = 690
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR N++RP++C IL R HGS +++G T+VL
Sbjct: 311 RPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVL 347
>gi|320528964|ref|ZP_08030056.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
F0399]
gi|320138594|gb|EFW30484.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
F0399]
Length = 690
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR N++RP++C IL R HGS +++G T+VL
Sbjct: 311 RPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVL 347
>gi|216264741|ref|ZP_03436733.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi
156a]
gi|218249358|ref|YP_002375304.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7]
gi|223889336|ref|ZP_03623923.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi 64b]
gi|226321270|ref|ZP_03796798.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
Bol26]
gi|226702621|sp|B7J0Q1.1|PNP_BORBZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|215981214|gb|EEC22021.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi
156a]
gi|218164546|gb|ACK74607.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7]
gi|223885257|gb|EEF56360.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi 64b]
gi|226233302|gb|EEH32053.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
Bol26]
Length = 722
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALA 353
>gi|387827700|ref|YP_005806982.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
N40]
gi|312149591|gb|ADQ29662.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
N40]
Length = 716
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 310 RTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALA 347
>gi|225551703|ref|ZP_03772647.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1]
gi|225371730|gb|EEH01156.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1]
Length = 722
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALA 353
>gi|224533452|ref|ZP_03674045.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
CA-11.2a]
gi|224513414|gb|EEF83772.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
CA-11.2a]
Length = 722
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALA 353
>gi|226320852|ref|ZP_03796404.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
29805]
gi|226233718|gb|EEH32447.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
29805]
Length = 722
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALA 353
>gi|224533071|ref|ZP_03673676.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
WI91-23]
gi|224512007|gb|EEF82403.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
WI91-23]
Length = 722
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALA 353
>gi|221217569|ref|ZP_03589038.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi 72a]
gi|225549375|ref|ZP_03770347.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
94a]
gi|225550249|ref|ZP_03771208.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
118a]
gi|221192515|gb|EEE18733.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia burgdorferi 72a]
gi|225369117|gb|EEG98571.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
118a]
gi|225370003|gb|EEG99444.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
94a]
Length = 722
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALA 353
>gi|195941985|ref|ZP_03087367.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi
80a]
gi|365992429|ref|NP_212939.2| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Borrelia burgdorferi B31]
gi|387826434|ref|YP_005805887.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
JD1]
gi|384872612|sp|O51745.2|PNP_BORBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|312147830|gb|ADQ30489.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
JD1]
gi|356609434|gb|AAC67149.2| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Borrelia burgdorferi B31]
Length = 716
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 310 RTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALA 347
>gi|443289487|ref|ZP_21028581.1| polynucleotide phosphorylase, has polyadenylase activity
[Micromonospora lupini str. Lupac 08]
gi|385887640|emb|CCH16655.1| polynucleotide phosphorylase, has polyadenylase activity
[Micromonospora lupini str. Lupac 08]
Length = 798
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +RPL +L R HGSA + +G+T++L N
Sbjct: 341 RMDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQILGVTTLN 383
>gi|313895740|ref|ZP_07829296.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312975866|gb|EFR41325.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 635
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR N++RP++C IL R HGS +++G T+VL
Sbjct: 256 RPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVL 292
>gi|432328765|ref|YP_007246909.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
gi|432135474|gb|AGB04743.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
Length = 246
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR PNQLRP+ +L RA GSA G K++AA
Sbjct: 16 RIDGRLPNQLRPIKMEVGVLERADGSAYIEWGGNKIMAA 54
>gi|419760466|ref|ZP_14286745.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
H17ap60334]
gi|407514569|gb|EKF49384.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
H17ap60334]
Length = 697
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR +++RP+ C +L R HGSA +++G+T+ L
Sbjct: 321 RADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLG 358
>gi|217077873|ref|YP_002335591.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
TCF52B]
gi|257096711|sp|B7IE23.1|PNP_THEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217037728|gb|ACJ76250.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus
TCF52B]
Length = 697
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR +++RP+ C +L R HGSA +++G+T+ L
Sbjct: 321 RADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLG 358
>gi|198433180|ref|XP_002130542.1| PREDICTED: similar to predicted protein isoform 1 [Ciona
intestinalis]
Length = 235
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 19 CYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEK 69
C + L A GSA +SQG+T V+ A + +K +EV ++ K G EK
Sbjct: 21 CEMNALKNADGSAFYSQGETSVMVAVYGPGDLKETKQEIDKALVEVDFRPKLGSPTVNEK 80
Query: 70 EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
E ++ ++ +L ++P T ++I+Q+
Sbjct: 81 YLERFVQGVCENAIMLALHPRTAFAIIVQIM 111
>gi|219685671|ref|ZP_03540485.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia garinii Far04]
gi|219672787|gb|EED29812.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia garinii Far04]
Length = 721
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDVIAEVDILSRTHGSALFTRGETQALA 353
>gi|297828842|ref|XP_002882303.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
lyrata]
gi|297328143|gb|EFH58562.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
lyrata]
Length = 922
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR +++RP+ C +L RAHGS +++G+T+ LA
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALA 484
>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 21/117 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA------------KNENPEKVS 52
R DGR + R + + A GSA QG+TKVLAA + EK
Sbjct: 10 RFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKCI 69
Query: 53 IEVIW---------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
++V + + + + K+ +E + LK+T ++ + T+ P + S+ ++V
Sbjct: 70 VDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVEVL 126
>gi|7413616|emb|CAB85703.1| putative polynucleotide phosphorylase [Arabidopsis thaliana]
Length = 922
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR +++RP+ C +L RAHGS +++G+T+ LA
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALA 484
>gi|30678905|ref|NP_187021.2| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
gi|75151653|sp|Q8GZQ3.1|PNP1_ARATH RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
chloroplastic; Short=AtcpPNPase; AltName:
Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
AltName: Full=Protein PIGMENT DEFECTIVE 326; AltName:
Full=Protein RESISTANT TO INHIBITION WITH FSM 10; Flags:
Precursor
gi|25991185|gb|AAN76771.1|AF450480_1 polynucleotide phosphorylase [Arabidopsis thaliana]
gi|332640453|gb|AEE73974.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
Length = 922
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR +++RP+ C +L RAHGS +++G+T+ LA
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALA 484
>gi|386852139|ref|YP_006270152.1| polyribonucleotide nucleotidyltransferase [Actinoplanes sp.
SE50/110]
gi|359839643|gb|AEV88084.1| polyribonucleotide nucleotidyltransferase [Actinoplanes sp.
SE50/110]
Length = 775
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +RPL +L R HGSA + +G+T++L N
Sbjct: 342 RIDGRGPRDIRPLTAQIGVLPRVHGSALFERGETQILGVTTLN 384
>gi|350273006|ref|YP_004884314.1| polyribonucleotide nucleotidyltransferase [Oscillibacter
valericigenes Sjm18-20]
gi|348597848|dbj|BAL01809.1| polyribonucleotide nucleotidyltransferase [Oscillibacter
valericigenes Sjm18-20]
Length = 716
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
+E R DGR N++RPL+ +L R HGS +++G T+VL+
Sbjct: 318 LEGHRVDGRQSNEIRPLSAEVGVLPRVHGSGLFTRGQTQVLS 359
>gi|429759714|ref|ZP_19292210.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica KON]
gi|429179304|gb|EKY20560.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica KON]
Length = 689
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP--EKVSIEVI 56
R DGR +++RP++C +L R HGS +++G T+VL P EK +I+ I
Sbjct: 310 RPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGI 363
>gi|418635150|ref|ZP_13197535.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis VCU139]
gi|374842162|gb|EHS05608.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis VCU139]
Length = 698
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLESEVGILPRAHGSGLFTRGQTQALS 356
>gi|315658436|ref|ZP_07911308.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis M23590]
gi|315496765|gb|EFU85088.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis M23590]
Length = 698
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLESEVGILPRAHGSGLFTRGQTQALS 356
>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 21/117 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA------------KNENPEKVS 52
R DGR + R + + A GSA QG+TKVLAA + EK
Sbjct: 10 RFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKCI 69
Query: 53 IEVIW---------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
++V + + + + K+ +E + LK+T ++ + T+ P + S+ ++V
Sbjct: 70 VDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVEVL 126
>gi|15639871|ref|NP_219321.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189026109|ref|YP_001933881.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum
subsp. pallidum SS14]
gi|378973402|ref|YP_005222008.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pertenue str. SamoaD]
gi|378974469|ref|YP_005223077.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pertenue str. Gauthier]
gi|378975527|ref|YP_005224137.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pallidum DAL-1]
gi|378982378|ref|YP_005230685.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pertenue str. CDC2]
gi|384422379|ref|YP_005631738.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pallidum str. Chicago]
gi|408502737|ref|YP_006870181.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pallidum str. Mexico A]
gi|81344924|sp|O83856.1|PNP_TREPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704828|sp|B2S4C3.1|PNP_TREPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|3323203|gb|AAC26576.1| polyribonucleotide nucleotidyltransferase (pnp) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018684|gb|ACD71302.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pallidum SS14]
gi|291060245|gb|ADD72980.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pallidum str. Chicago]
gi|374677727|gb|AEZ58020.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pertenue str. SamoaD]
gi|374678797|gb|AEZ59089.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pertenue str. CDC2]
gi|374679866|gb|AEZ60157.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pertenue str. Gauthier]
gi|374680927|gb|AEZ61217.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pallidum DAL-1]
gi|408476100|gb|AFU66865.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
subsp. pallidum str. Mexico A]
Length = 702
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR + +RP+AC +L R HGSA +++G+T+ LA
Sbjct: 314 RIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLA 351
>gi|338706835|ref|YP_004673603.1| polyribonucleotide nucleotidyltransferase [Treponema
paraluiscuniculi Cuniculi A]
gi|335344896|gb|AEH40812.1| polyribonucleotide nucleotidyltransferase [Treponema
paraluiscuniculi Cuniculi A]
Length = 702
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR + +RP+AC +L R HGSA +++G+T+ LA
Sbjct: 314 RIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLA 351
>gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus]
Length = 282
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---KNENPEK----VSIEVI- 56
R DGR+ N+LR + I+ +A GSA G+TK++ + E P K V E+
Sbjct: 37 RHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSVFDPREVPNKTGYCVQGELFC 96
Query: 57 ---------WKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
K K Q +EKEY +IL+R L+ L PN V V
Sbjct: 97 EFKFAPFSHHKRKMHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVL 149
>gi|333370980|ref|ZP_08462949.1| polyribonucleotide nucleotidyltransferase [Desmospora sp. 8437]
gi|332976846|gb|EGK13671.1| polyribonucleotide nucleotidyltransferase [Desmospora sp. 8437]
Length = 697
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E R DGR+P ++RPL IL R HGS + +G T+VL+
Sbjct: 312 EKKRPDGRSPEEIRPLTSEVGILPRTHGSGHFRRGQTQVLS 352
>gi|159036978|ref|YP_001536231.1| polynucleotide phosphorylase/polyadenylase [Salinispora arenicola
CNS-205]
gi|187611286|sp|A8M758.1|PNP_SALAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157915813|gb|ABV97240.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Salinispora arenicola CNS-205]
Length = 786
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +RPL +L R HGSA + +G+T++L N
Sbjct: 341 RIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQILGVTTLN 383
>gi|343128102|ref|YP_004778033.1| S1 RNA binding domain-containing protein [Borrelia bissettii DN127]
gi|342222790|gb|AEL18968.1| S1 RNA binding domain protein [Borrelia bissettii DN127]
Length = 716
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 310 RTDGRTPNEIRNIISEVDILSRTHGSALFTRGETQALA 347
>gi|303229604|ref|ZP_07316392.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
ACS-134-V-Col7a]
gi|302515729|gb|EFL57683.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
ACS-134-V-Col7a]
Length = 689
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP--EKVSIEVI 56
R DGR +++RP++C +L R HGS +++G T+VL P EK +I+ I
Sbjct: 310 RPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGI 363
>gi|401679512|ref|ZP_10811439.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. ACP1]
gi|400219446|gb|EJO50314.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. ACP1]
Length = 689
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP--EKVSIEVI 56
R DGR +++RP++C +L R HGS +++G T+VL P EK +I+ I
Sbjct: 310 RPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGI 363
>gi|303232084|ref|ZP_07318787.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
ACS-049-V-Sch6]
gi|302513190|gb|EFL55229.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
ACS-049-V-Sch6]
Length = 689
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP--EKVSIEVI 56
R DGR +++RP++C +L R HGS +++G T+VL P EK +I+ I
Sbjct: 310 RPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGI 363
>gi|296233893|ref|XP_002762219.1| PREDICTED: exosome complex component RRP46 [Callithrix jacchus]
Length = 179
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 32 SWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYEMILKRTLQSI 82
+ GDT VLA E K ++EVI + K G G EK E +++ T +++
Sbjct: 20 TLGSGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAV 79
Query: 83 CILTINPNTTTSVIIQV 99
+ T++P T+ +V++QV
Sbjct: 80 VLGTLHPRTSITVVLQV 96
>gi|333986695|ref|YP_004519302.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
gi|333824839|gb|AEG17501.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
Length = 242
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
RADGR ++LRPL +L RA GSA G KVLAA
Sbjct: 19 RADGRAFDELRPLKIEAGVLERADGSAYVEMGGNKVLAA 57
>gi|158523039|ref|YP_001530909.1| polynucleotide phosphorylase/polyadenylase [Desulfococcus
oleovorans Hxd3]
gi|226702647|sp|A8ZZ59.1|PNP_DESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|158511865|gb|ABW68832.1| Polyribonucleotide nucleotidyltransferase [Desulfococcus oleovorans
Hxd3]
Length = 721
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP++C +L R HGSA +++G+T+VL
Sbjct: 314 RIDGRAFDEVRPISCEVGVLPRTHGSALFTRGETQVLG 351
>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
Length = 246
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P++LR + C + + GSA QG+TKVLAA
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAA 52
>gi|6006870|gb|AAF00646.1|AC009540_23 putative polynucleotide phosphorylase [Arabidopsis thaliana]
gi|6091752|gb|AAF03462.1|AC009327_1 putative polynucleotide phosphorylase [Arabidopsis thaliana]
Length = 948
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR +++RP+ C +L RAHGS +++G+T+ LA
Sbjct: 473 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALA 510
>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
Length = 249
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P++LR + C + + GSA QG+TKVLAA
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAA 52
>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
Length = 249
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P++LR + C + + GSA QG+TKVLAA
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAA 52
>gi|24584046|ref|NP_609618.2| Ski6, isoform A [Drosophila melanogaster]
gi|442627738|ref|NP_001260437.1| Ski6, isoform B [Drosophila melanogaster]
gi|7298022|gb|AAF53263.1| Ski6, isoform A [Drosophila melanogaster]
gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
gi|440213772|gb|AGB92972.1| Ski6, isoform B [Drosophila melanogaster]
Length = 246
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P++LR + C + + GSA QG+TKVLAA
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAA 52
>gi|374856299|dbj|BAL59153.1| polyribonucleotide nucleotidyltransferase [uncultured candidate
division OP1 bacterium]
Length = 788
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR ++LRP++C +L R HGSA +++G+T+ L
Sbjct: 320 RMDGRRADELRPISCEVGLLPRVHGSALFTRGETQSLG 357
>gi|339499977|ref|YP_004698012.1| polyribonucleotide nucleotidyltransferase [Spirochaeta caldaria DSM
7334]
gi|338834326|gb|AEJ19504.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta caldaria DSM
7334]
Length = 703
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+ C +L R HGSA +++G+T+ LA
Sbjct: 314 RVDGRGTEDIRPITCEIGVLPRTHGSALFTRGETQALA 351
>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
Length = 245
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR PN+LR + C + + GSA QG+TKVLAA
Sbjct: 9 RLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAA 47
>gi|381179449|ref|ZP_09888301.1| polyribonucleotide nucleotidyltransferase [Treponema saccharophilum
DSM 2985]
gi|380768623|gb|EIC02610.1| polyribonucleotide nucleotidyltransferase [Treponema saccharophilum
DSM 2985]
Length = 700
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP+ C ++L R HGSA +++G+T+ LA
Sbjct: 315 RIDGRKCDEIRPITCEVNVLPRPHGSALFTRGETQSLA 352
>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
Length = 246
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P++LR + C + + GSA QG+TKVLAA
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAA 52
>gi|296132896|ref|YP_003640143.1| polyribonucleotide nucleotidyltransferase [Thermincola potens JR]
gi|296031474|gb|ADG82242.1| polyribonucleotide nucleotidyltransferase [Thermincola potens JR]
Length = 735
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP+ C+ IL R HGS +++G T+VL
Sbjct: 349 RIDGRKLDEVRPIECHVGILPRTHGSGLFTRGQTQVL 385
>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
Length = 246
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P++LR + C + + GSA QG+TKVLAA
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAA 52
>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
Length = 249
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P++LR + C + + GSA QG+TKVLAA
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAA 52
>gi|325111014|ref|YP_004272082.1| polyribonucleotide nucleotidyltransferase [Planctomyces
brasiliensis DSM 5305]
gi|324971282|gb|ADY62060.1| Polyribonucleotide nucleotidyltransferase [Planctomyces
brasiliensis DSM 5305]
Length = 711
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
+E R DGR P LR ++C ++ R HGSA +++G+T+ LA+
Sbjct: 314 IEGKRLDGRGPTDLRQISCKVGLVPRVHGSALFTRGETQSLAS 356
>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 245
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR PNQLRP+ +L RA GSA G K++AA
Sbjct: 16 RIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAA 54
>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
Length = 246
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P++LR + C + + GSA QG+TKVLAA
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAA 52
>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
Length = 249
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P++LR + C + + GSA QG+TKVLAA
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAA 52
>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 243
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR PNQLRP+ +L RA GSA G K++AA
Sbjct: 14 RIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAA 52
>gi|320355005|ref|YP_004196344.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
propionicus DSM 2032]
gi|320123507|gb|ADW19053.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
propionicus DSM 2032]
Length = 695
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP++C IL RAHGSA +++G+T+ L
Sbjct: 312 RLDGRSFEDVRPISCEVGILPRAHGSALFTRGETQAL 348
>gi|408382267|ref|ZP_11179812.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum
DSM 3637]
gi|407814923|gb|EKF85545.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum
DSM 3637]
Length = 249
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR ++LRPL +L RA GSA GD KVLAA
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSAYVEIGDNKVLAA 64
>gi|294793588|ref|ZP_06758725.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
gi|416998829|ref|ZP_11939498.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula
ACS-068-V-Sch12]
gi|294455158|gb|EFG23530.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
gi|333976982|gb|EGL77841.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula
ACS-068-V-Sch12]
Length = 689
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP--EKVSIE 54
R DGR +++RP++C +L R HGS +++G T+VL P EK +I+
Sbjct: 310 RPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTID 361
>gi|139438503|ref|ZP_01772019.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC
25986]
gi|133776042|gb|EBA39862.1| tRNA nucleotidyltransferase [Collinsella aerofaciens ATCC 25986]
Length = 241
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
M+++RA+GR N+LRP+ ++ AHGS GDT+VL A
Sbjct: 4 MQVNRANGRAANELRPVKLTRGVMKHAHGSCLAEFGDTRVLCA 46
>gi|403163440|ref|XP_003323509.2| hypothetical protein PGTG_05411 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164298|gb|EFP79090.2| hypothetical protein PGTG_05411 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 312
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
M I R+D R +R L SIL R+ GSA +S GD K L A ++E P +
Sbjct: 1 MSIMRSDSRTEADIRSLTMRMSILSRSDGSAQFSFGDLKALGAVTGPAEVRIRDEKPTEA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++VI G G K +K + +L P + + +Q
Sbjct: 61 FVDVIVVPVCGLPGPPTKSLAHSIKSFFTPLILLKKYPRSLIQINLQ 107
>gi|294791724|ref|ZP_06756872.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
gi|294456954|gb|EFG25316.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
Length = 689
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP--EKVSIE 54
R DGR +++RP++C +L R HGS +++G T+VL P EK +I+
Sbjct: 310 RPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTID 361
>gi|169614405|ref|XP_001800619.1| hypothetical protein SNOG_10343 [Phaeosphaeria nodorum SN15]
gi|111061558|gb|EAT82678.1| hypothetical protein SNOG_10343 [Phaeosphaeria nodorum SN15]
Length = 249
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 24 LHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYEMI 74
L+RA GSA+++ ++ A ++E PE+ +IEV + G +E+ E +
Sbjct: 11 LNRADGSATYTHNGFSIIGAVNGPIEVLRRDEMPEEATIEVNVRPAVGVGSPKERHLETL 70
Query: 75 LKRTLQSICILTINPNTTTSVIIQV 99
L TL+SI + + P T + +QV
Sbjct: 71 LHNTLRSIILTRLIPRTLVQLTLQV 95
>gi|282848815|ref|ZP_06258208.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
17745]
gi|282581469|gb|EFB86859.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
17745]
Length = 689
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP--EKVSIE 54
R DGR +++RP++C +L R HGS +++G T+VL P EK +I+
Sbjct: 310 RPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTID 361
>gi|385773349|ref|YP_005645915.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
Length = 245
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVS------IE 54
R DGR P +LR + +L A GSA + G+TK +AA K +P +S +
Sbjct: 16 RIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ + P T V ++
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEIL 129
>gi|254282476|ref|ZP_04957444.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR51-B]
gi|219678679|gb|EED35028.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR51-B]
Length = 717
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ +RP+AC IL + HGSA +++G+T+ + A
Sbjct: 314 RIDGRDGRTVRPIACELDILSKVHGSALFTRGETQAIGA 352
>gi|425736869|ref|ZP_18855145.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
massiliensis S46]
gi|425483341|gb|EKU50493.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
massiliensis S46]
Length = 698
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL+ +L RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLSSETGLLPRAHGSGLFTRGQTQALS 356
>gi|375086947|ref|ZP_09733339.1| polyribonucleotide nucleotidyltransferase [Megamonas funiformis YIT
11815]
gi|374563662|gb|EHR34973.1| polyribonucleotide nucleotidyltransferase [Megamonas funiformis YIT
11815]
Length = 689
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR ++RP++C IL R HGSA +++G T++L
Sbjct: 311 RPDGRGLEEVRPISCEVGILPRTHGSALFTRGQTQIL 347
>gi|291532399|emb|CBL05512.1| polyribonucleotide nucleotidyltransferase [Megamonas hypermegale
ART12/1]
Length = 574
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR ++RP++C IL R HGSA +++G T++L
Sbjct: 311 RPDGRGLEEVRPISCEVGILPRTHGSALFTRGQTQIL 347
>gi|255994504|ref|ZP_05427639.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
ATCC 49989]
gi|255993217|gb|EEU03306.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
ATCC 49989]
Length = 696
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R D R ++RP+ C SIL RAHGS + +G+T+VL+A
Sbjct: 316 RPDDRKRTEVRPIWCDTSILPRAHGSGLFKRGETQVLSA 354
>gi|332298592|ref|YP_004440514.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense
DSM 12168]
gi|332181695|gb|AEE17383.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense
DSM 12168]
Length = 699
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP++C +L R HGSA +++G+T+ LA
Sbjct: 314 RVDGRGTEDIRPISCEIDVLPRPHGSAIFTRGETQSLA 351
>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
Length = 245
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA---------AKNENPEKVSIEV 55
R DGR N+LR + C + + GSA QG+TKVLA AK N E+ +
Sbjct: 10 RLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQAPAKKSNHEECVVNC 69
Query: 56 IWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ T G+++K E + L++ L + + P + V I+V
Sbjct: 70 QYSMATFSTGERKKRPRGDRKSQEMTIHLQQALSAAIKTDLYPKSQIDVYIEVL 123
>gi|391233309|ref|ZP_10269515.1| polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV1]
gi|391222970|gb|EIQ01391.1| polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV1]
Length = 755
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
RAD R+ LRP+A +L R HGSA + +GDT+ L P K
Sbjct: 316 RADKRDAKSLRPIASEVGVLPRVHGSALFQRGDTQGLVTATLGPTK 361
>gi|373853491|ref|ZP_09596290.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV5]
gi|372473018|gb|EHP33029.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV5]
Length = 751
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
RAD R+ LRP+A +L R HGSA + +GDT+ L P K
Sbjct: 316 RADKRDAKSLRPIASEVGVLPRVHGSALFQRGDTQGLVTATLGPTK 361
>gi|443689973|gb|ELT92240.1| hypothetical protein CAPTEDRAFT_152902 [Capitella teleta]
Length = 218
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 8 GRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
G QLR + S L + GSA QG + LAA E ++ ++++++K
Sbjct: 6 GSEQCQLRKMLGELSRLSQPDGSAMLCQGTSTSLAAVYGPRDVRISKELVDRATMDIVYK 65
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
KTG G + E I++ T +++ ++ +P T+ VI+Q
Sbjct: 66 PKTGLPGNDARFLERIIRSTCENMILVKQHPRTSIDVIVQ 105
>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
Length = 247
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSI 53
R DGR N+LR + I RA GSA + QG+TK++AA P ++S+
Sbjct: 13 RIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAV-YGPREISV 60
>gi|373452130|ref|ZP_09544048.1| polyribonucleotide nucleotidyltransferase [Eubacterium sp. 3_1_31]
gi|371967562|gb|EHO85033.1| polyribonucleotide nucleotidyltransferase [Eubacterium sp. 3_1_31]
Length = 735
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR +++RPL IL R HGSA +++G+T+VL+ P
Sbjct: 320 RPDGRKIDEIRPLDSQVDILPRVHGSALFTRGETQVLSVTTLGP 363
>gi|331237979|ref|XP_003331645.1| hypothetical protein PGTG_12810 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309310635|gb|EFP87226.1| hypothetical protein PGTG_12810 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
M I R+D R +R L SIL R+ GSA +S GD K L A ++E P +
Sbjct: 1 MSIMRSDSRTEADIRSLTMRMSILSRSDGSAQFSFGDLKALGAVTGPAEVRIRDEKPTEA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++VI G G K +K + +L P + + +Q
Sbjct: 61 FVDVIVVPVCGLPGPPTKSLAHSIKSFFTPLILLKKYPRSLIQINLQ 107
>gi|296085901|emb|CBI31225.3| unnamed protein product [Vitis vinifera]
Length = 942
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR P+ +R + C +L RAHGSA +++G+T+ LA
Sbjct: 437 RSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLA 474
>gi|302389789|ref|YP_003825610.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
oceani DSM 16646]
gi|302200417|gb|ADL07987.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
oceani DSM 16646]
Length = 702
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR ++RP++C IL R HGS +++G T+VL
Sbjct: 311 RPDGRKSTEIRPISCEVGILPRTHGSGLFTRGQTQVL 347
>gi|388580057|gb|EIM20375.1| hypothetical protein WALSEDRAFT_69929 [Wallemia sebi CBS 633.66]
Length = 240
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R DGR PN++R + C R G+ +S GD +VL + ++E ++ +I+V
Sbjct: 9 RKDGRTPNEVREINCTRESNARVDGAVRFSFGDVEVLGSATGPVEANLRDEIVDRCTIDV 68
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++S G Q KE ++ L S+ + P + ++Q
Sbjct: 69 NFRSINNVTGVQYKELADQIEGALSSVVVGEQLPRSLVRFVVQ 111
>gi|400756528|ref|NP_952644.4| polynucleotide phosphorylase/polyadenylase [Geobacter
sulfurreducens PCA]
gi|409912114|ref|YP_006890579.1| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
KN400]
gi|307634882|gb|ADI84427.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
KN400]
gi|399107839|gb|AAR34967.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
PCA]
Length = 740
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ +RP++ S+L RAHGSA +++G+T+ L A
Sbjct: 356 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVA 394
>gi|293400548|ref|ZP_06644693.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305574|gb|EFE46818.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 738
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR +++RPL IL R HGSA +++G+T+VL+ P
Sbjct: 323 RPDGRKIDEIRPLDSQVDILPRVHGSALFTRGETQVLSVTTLGP 366
>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
Length = 247
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P++LR + C + +A GSA QG+TKVLAA
Sbjct: 13 RFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAA 51
>gi|330466373|ref|YP_004404116.1| polynucleotide phosphorylase/polyadenylase [Verrucosispora maris
AB-18-032]
gi|328809344|gb|AEB43516.1| polynucleotide phosphorylase/polyadenylase [Verrucosispora maris
AB-18-032]
Length = 789
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +RPL +L R HGSA + +G+T++L N
Sbjct: 341 RIDGRGPRDIRPLNAEVGVLPRVHGSALFERGETQILGVTTLN 383
>gi|81702393|sp|Q74CS9.1|PNP_GEOSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 697
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ +RP++ S+L RAHGSA +++G+T+ L A
Sbjct: 313 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVA 351
>gi|434388109|ref|YP_007098720.1| polyribonucleotide nucleotidyltransferase [Chamaesiphon minutus PCC
6605]
gi|428019099|gb|AFY95193.1| polyribonucleotide nucleotidyltransferase [Chamaesiphon minutus PCC
6605]
Length = 713
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 RADGRNPNQLRPLACYCSIL-HRAHGSASWSQGDTKVLAA 43
R DGR +Q+RP++C+ +L R HG+ +++G T+VL+A
Sbjct: 323 RVDGRTLDQVRPISCFVGVLPRRVHGTGLFNRGQTQVLSA 362
>gi|78187489|ref|YP_375532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium luteolum DSM
273]
gi|123582727|sp|Q3B2E2.1|PNP_PELLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78167391|gb|ABB24489.1| Polyribonucleotide nucleotidyltransferase [Chlorobium luteolum DSM
273]
Length = 732
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGRN Q+RP+ ++ RAHGSA +++G+T+ L A
Sbjct: 332 RLDGRNLEQVRPITIELGVIPRAHGSALFTRGETQALVA 370
>gi|386319440|ref|YP_006015603.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
pseudintermedius ED99]
gi|323464611|gb|ADX76764.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
pseudintermedius ED99]
Length = 697
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL+ +L RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALS 356
>gi|319892292|ref|YP_004149167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
pseudintermedius HKU10-03]
gi|317161988|gb|ADV05531.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
pseudintermedius HKU10-03]
Length = 697
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL+ +L RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALS 356
>gi|238916832|ref|YP_002930349.1| polynucleotide phosphorylase/polyadenylase [Eubacterium eligens
ATCC 27750]
gi|238872192|gb|ACR71902.1| polyribonucleotide nucleotidyltransferase [Eubacterium eligens ATCC
27750]
Length = 723
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR NQ+RPLA I+ R HGSA +++G T++
Sbjct: 341 RPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQI 376
>gi|225439207|ref|XP_002270169.1| PREDICTED: polyribonucleotide nucleotidyltransferase [Vitis
vinifera]
Length = 946
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR P+ +R + C +L RAHGSA +++G+T+ LA
Sbjct: 437 RSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLA 474
>gi|121535268|ref|ZP_01667082.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
carboxydivorans Nor1]
gi|121306153|gb|EAX47081.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
carboxydivorans Nor1]
Length = 699
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C +L R HGS +++G T+VL
Sbjct: 311 RPDGRKLDEIRPISCEVGLLRRTHGSGLFTRGQTQVL 347
>gi|408356815|ref|YP_006845346.1| polyribonucleotide nucleotidyltransferase [Amphibacillus xylanus
NBRC 15112]
gi|407727586|dbj|BAM47584.1| polyribonucleotide nucleotidyltransferase [Amphibacillus xylanus
NBRC 15112]
Length = 705
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P ++RPL+ ++L R HGS +++G T+VL+
Sbjct: 315 RPDGRTPEEIRPLSSRVNLLPRTHGSGLFTRGQTQVLS 352
>gi|304316856|ref|YP_003852001.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778358|gb|ADL68917.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 700
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR + +RP+ C +L R HGSA +++G T+V+ P
Sbjct: 312 RVDGRGLDDIRPITCDIGVLPRTHGSAVFTRGQTQVMTVATLGP 355
>gi|282600904|ref|ZP_05980076.2| polyribonucleotide nucleotidyltransferase [Subdoligranulum
variabile DSM 15176]
gi|282570791|gb|EFB76326.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum
variabile DSM 15176]
Length = 759
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR N++RPLA +L R HGS +++G T+VL
Sbjct: 363 RVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVL 399
>gi|386855347|ref|YP_006259524.1| Polyribonucleotide nucleotidyltransferase [Deinococcus gobiensis
I-0]
gi|379998876|gb|AFD24066.1| Polyribonucleotide nucleotidyltransferase [Deinococcus gobiensis
I-0]
Length = 727
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSI 53
RADGRN +RP+ L RAHGSA +++G+T+VL E+ I
Sbjct: 318 RADGRNSKTVRPIWIETRPLPRAHGSAIFTRGETQVLGVATLGTERDEI 366
>gi|433654999|ref|YP_007298707.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293188|gb|AGB19010.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 700
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR + +RP+ C +L R HGSA +++G T+V+ P
Sbjct: 312 RVDGRGLDDIRPITCDIGVLPRTHGSAVFTRGQTQVMTVATLGP 355
>gi|145593929|ref|YP_001158226.1| polynucleotide phosphorylase/polyadenylase [Salinispora tropica
CNB-440]
gi|187611287|sp|A4X4P8.1|PNP_SALTO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145303266|gb|ABP53848.1| Polyribonucleotide nucleotidyltransferase [Salinispora tropica
CNB-440]
Length = 785
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +RPL +L R HGSA + +G+T+++ N
Sbjct: 341 RIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQIMGVTTLN 383
>gi|403378756|ref|ZP_10920813.1| hypothetical protein PJC66_02890 [Paenibacillus sp. JC66]
Length = 694
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RP+ C +L R HGSA +++G T+VL++
Sbjct: 314 RPDGRKLDEIRPIECDTGLLPRTHGSALFTRGQTQVLSS 352
>gi|305431698|ref|ZP_07400867.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20]
gi|304445293|gb|EFM37937.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20]
Length = 738
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 355 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 391
>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
Length = 245
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR PN++R L ++ RA GSA + G+T+V+AA
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAA 49
>gi|419609202|ref|ZP_14143362.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli H6]
gi|380584333|gb|EIB05789.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli H6]
Length = 719
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|419595276|ref|ZP_14130383.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
23336]
gi|380573977|gb|EIA96098.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
23336]
Length = 719
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|419579112|ref|ZP_14115531.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1948]
gi|419614665|ref|ZP_14148440.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli H56]
gi|380558008|gb|EIA81199.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1948]
gi|380592463|gb|EIB13356.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli H56]
Length = 719
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|419571886|ref|ZP_14108825.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
132-6]
gi|380552745|gb|EIA76297.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
132-6]
Length = 719
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|419554842|ref|ZP_14092967.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2698]
gi|380531670|gb|EIA56683.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2698]
Length = 719
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|419543997|ref|ZP_14082967.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2553]
gi|419563428|ref|ZP_14100872.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1091]
gi|419566752|ref|ZP_14104003.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1148]
gi|419573304|ref|ZP_14110110.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1891]
gi|419591623|ref|ZP_14126967.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
37/05]
gi|419593229|ref|ZP_14128457.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
9854]
gi|419596715|ref|ZP_14131712.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
23341]
gi|419598181|ref|ZP_14133067.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
23342]
gi|419612856|ref|ZP_14146721.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli H9]
gi|380525877|gb|EIA51374.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2553]
gi|380538140|gb|EIA62657.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1091]
gi|380545573|gb|EIA69545.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1148]
gi|380551824|gb|EIA75400.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1891]
gi|380567781|gb|EIA90279.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
37/05]
gi|380571226|gb|EIA93630.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
9854]
gi|380575425|gb|EIA97504.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
23341]
gi|380577547|gb|EIA99554.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
23342]
gi|380589453|gb|EIB10516.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli H9]
Length = 719
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|419542439|ref|ZP_14081564.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2548]
gi|419550337|ref|ZP_14088846.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2688]
gi|419558350|ref|ZP_14096219.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
80352]
gi|380523127|gb|EIA48784.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2548]
gi|380530806|gb|EIA55859.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2688]
gi|380539514|gb|EIA63878.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
80352]
Length = 719
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|419547216|ref|ZP_14085953.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2680]
gi|380521067|gb|EIA46817.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2680]
Length = 719
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|419540751|ref|ZP_14079984.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
Z163]
gi|419553590|ref|ZP_14091807.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2692]
gi|419585705|ref|ZP_14121751.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
202/04]
gi|419588512|ref|ZP_14124333.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
317/04]
gi|419600954|ref|ZP_14135691.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
23344]
gi|419609732|ref|ZP_14143811.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli H8]
gi|419615986|ref|ZP_14149641.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
Z156]
gi|380516120|gb|EIA42258.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
Z163]
gi|380528352|gb|EIA53650.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2692]
gi|380561660|gb|EIA84580.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
202/04]
gi|380569786|gb|EIA92220.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
317/04]
gi|380582379|gb|EIB04039.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
23344]
gi|380591510|gb|EIB12489.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli H8]
gi|380596332|gb|EIB17027.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
Z156]
Length = 719
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|225164705|ref|ZP_03726942.1| Polyribonucleotide nucleotidyltransferase [Diplosphaera
colitermitum TAV2]
gi|224800695|gb|EEG19054.1| Polyribonucleotide nucleotidyltransferase [Diplosphaera
colitermitum TAV2]
Length = 747
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
RAD R+ +RPLA L R HGSA + +GDT+ L P K
Sbjct: 316 RADKRDAKTIRPLASEVGTLPRVHGSALFQRGDTQTLVTATLGPTK 361
>gi|57168155|ref|ZP_00367294.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
coli RM2228]
gi|419560397|ref|ZP_14098040.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
86119]
gi|57020529|gb|EAL57198.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
coli RM2228]
gi|380537188|gb|EIA61764.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
86119]
Length = 719
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|419538480|ref|ZP_14077835.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
90-3]
gi|419567855|ref|ZP_14105007.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1417]
gi|419603033|ref|ZP_14137596.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
151-9]
gi|380517670|gb|EIA43778.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
90-3]
gi|380547149|gb|EIA71076.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1417]
gi|380579704|gb|EIB01487.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
151-9]
Length = 719
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|422294508|gb|EKU21808.1| exosome complex component RRP41 [Nannochloropsis gaditana CCMP526]
Length = 249
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 23/116 (19%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVS-----------I 53
R DGR PN+LR + C A GSAS QG T+VLA + P +V+ I
Sbjct: 15 RTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVH-GPHEVTRRSEVQHDKCII 73
Query: 54 EV-IWKSKTGQIGKQEK--------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
E +++ ++++ E + LK+T ++ + + P T V IQV+
Sbjct: 74 ECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPR--TQVDIQVY 127
>gi|410679597|ref|YP_006931999.1| polynucleotide phosphorylase/polyadenylase [Borrelia afzelii HLJ01]
gi|408536985|gb|AFU75116.1| polynucleotide phosphorylase/polyadenylase [Borrelia afzelii HLJ01]
Length = 716
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGS+ +++G+T+ LA
Sbjct: 310 RTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALA 347
>gi|384207290|ref|YP_005593012.1| S1 RNA binding domain-containing protein [Borrelia afzelii PKo]
gi|342857174|gb|AEL70022.1| S1 RNA binding domain protein [Borrelia afzelii PKo]
Length = 708
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGS+ +++G+T+ LA
Sbjct: 302 RTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALA 339
>gi|226356846|ref|YP_002786586.1| polynucleotide phosphorylase/polyadenylase [Deinococcus deserti
VCD115]
gi|257096684|sp|C1CXB5.1|PNP_DEIDV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226318836|gb|ACO46832.1| putative polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) [Deinococcus deserti VCD115]
Length = 721
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEV 55
RADGRN +RP+ L RAHGSA +++G+T+VL E+ I V
Sbjct: 319 RADGRNGRAVRPIWIEARPLPRAHGSAIFTRGETQVLGVATLGTERDEILV 369
>gi|226313012|ref|YP_002772906.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
NBRC 100599]
gi|254782708|sp|C0ZF43.1|PNP_BREBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226095960|dbj|BAH44402.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
NBRC 100599]
Length = 715
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR N++RPL+ +IL R HGSA +++G T+ L+
Sbjct: 318 RPDGRALNEIRPLSSETTILSRTHGSAMFTRGQTQALS 355
>gi|216263697|ref|ZP_03435692.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia afzelii ACA-1]
gi|215980541|gb|EEC21362.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) [Borrelia afzelii ACA-1]
Length = 722
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGS+ +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALA 353
>gi|111115640|ref|YP_710258.1| polynucleotide phosphorylase/polyadenylase [Borrelia afzelii PKo]
gi|123145624|sp|Q0SM46.1|PNP_BORAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110890914|gb|ABH02082.1| polyribonucleotide nucleotidyltransferase [Borrelia afzelii PKo]
Length = 722
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGS+ +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALA 353
>gi|419605312|ref|ZP_14139755.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
9853]
gi|380578390|gb|EIB00239.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
9853]
Length = 719
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|419548581|ref|ZP_14087200.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2685]
gi|380527227|gb|EIA52628.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
2685]
Length = 719
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL AHGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQAL 372
>gi|239636247|ref|ZP_04677249.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
L37603]
gi|239597602|gb|EEQ80097.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
L37603]
Length = 598
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL +L RAHGS +++G T+ L+
Sbjct: 218 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALS 255
>gi|333897111|ref|YP_004470985.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112376|gb|AEF17313.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 700
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR + +RP+ C +L R HGSA +++G T+V+ P
Sbjct: 312 RVDGRGLDDIRPITCDVGVLPRTHGSAIFTRGQTQVMTVATLGP 355
>gi|224540971|ref|ZP_03681510.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM
15897]
gi|224526122|gb|EEF95227.1| polyribonucleotide nucleotidyltransferase [Catenibacterium
mitsuokai DSM 15897]
Length = 712
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL +L R HGSA +++G+T+VL+A
Sbjct: 319 RPDGRKVDEVRPLDAQVDLLPRVHGSAMFTRGETQVLSA 357
>gi|390934932|ref|YP_006392437.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570433|gb|AFK86838.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 700
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR + +RP+ C +L R HGSA +++G T+V+ P
Sbjct: 312 RVDGRGLDDIRPITCDVGVLPRTHGSAIFTRGQTQVMTVATLGP 355
>gi|325294385|ref|YP_004280899.1| polyribonucleotide nucleotidyltransferase [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064833|gb|ADY72840.1| Polyribonucleotide nucleotidyltransferase [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 712
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR PN++RP+ +L R HGSA +++G T+ L
Sbjct: 312 RIDGRKPNEIRPITIEVGLLPRVHGSALFTRGQTQAL 348
>gi|417643550|ref|ZP_12293592.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
VCU121]
gi|445059807|ref|YP_007385211.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus warneri
SG1]
gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU121]
gi|443425864|gb|AGC90767.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus warneri
SG1]
Length = 699
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL +L RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALS 356
>gi|70726640|ref|YP_253554.1| polynucleotide phosphorylase [Staphylococcus haemolyticus JCSC1435]
gi|117940134|sp|Q4L5X7.1|PNP_STAHJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|68447364|dbj|BAE04948.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
haemolyticus JCSC1435]
Length = 700
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL +L RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALS 356
>gi|342732411|ref|YP_004771250.1| polyribonucleotide nucleotidyltransferase [Candidatus Arthromitus
sp. SFB-mouse-Japan]
gi|384455820|ref|YP_005668415.1| polyribonucleotide nucleotidyltransferase [Candidatus Arthromitus
sp. SFB-mouse-Yit]
gi|418016176|ref|ZP_12655741.1| polyribonucleotide nucleotidyltransferase [Candidatus Arthromitus
sp. SFB-mouse-NYU]
gi|418372678|ref|ZP_12964770.1| Polyribonucleotide nucleotidyltransferase [Candidatus Arthromitus
sp. SFB-mouse-SU]
gi|342329866|dbj|BAK56508.1| polyribonucleotide nucleotidyltransferase [Candidatus Arthromitus
sp. SFB-mouse-Japan]
gi|345506511|gb|EGX28805.1| polyribonucleotide nucleotidyltransferase [Candidatus Arthromitus
sp. SFB-mouse-NYU]
gi|346984163|dbj|BAK79839.1| polyribonucleotide nucleotidyltransferase [Candidatus Arthromitus
sp. SFB-mouse-Yit]
gi|380342347|gb|EIA30792.1| Polyribonucleotide nucleotidyltransferase [Candidatus Arthromitus
sp. SFB-mouse-SU]
Length = 704
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
E R DGR+ +++RP++C SIL R HG+ +++G T+VL P
Sbjct: 309 ENRRPDGRDFDEIRPISCDISILPRTHGTGLFTRGLTQVLTIATLGP 355
>gi|320527320|ref|ZP_08028505.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei
F0204]
gi|320132344|gb|EFW24889.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei
F0204]
Length = 752
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR ++LRPL +L R HGSA +++G+T+VL+ P
Sbjct: 331 RPDGRGLDELRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLGP 374
>gi|410694440|ref|YP_003625062.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Thiomonas sp. 3As]
gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Thiomonas sp. 3As]
Length = 719
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL+ S+L R HGSA +++G+T+ LA
Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALA 352
>gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
K12]
gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
K12]
Length = 719
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL+ S+L R HGSA +++G+T+ LA
Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALA 352
>gi|94984509|ref|YP_603873.1| polynucleotide phosphorylase [Deinococcus geothermalis DSM 11300]
gi|122986710|sp|Q1J1D0.1|PNP_DEIGD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|94554790|gb|ABF44704.1| Polyribonucleotide nucleotidyltransferase [Deinococcus geothermalis
DSM 11300]
Length = 721
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
RADGRN +RP+ L RAHGSA +++G+T+VL E+
Sbjct: 319 RADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLGTER 364
>gi|405980462|ref|ZP_11038801.1| polyribonucleotide nucleotidyltransferase [Actinomyces turicensis
ACS-279-V-Col4]
gi|404390455|gb|EJZ85524.1| polyribonucleotide nucleotidyltransferase [Actinomyces turicensis
ACS-279-V-Col4]
Length = 790
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R L+ +L R HGSA + +G+T++L
Sbjct: 347 RMDGRTPRQIRSLSAEVEVLPRVHGSAIFQRGETQILG 384
>gi|399525278|ref|ZP_10765733.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Atopobium sp. ICM58]
gi|398373323|gb|EJN51272.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Atopobium sp. ICM58]
Length = 781
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R L+ +L R HGSA + +G+T++L
Sbjct: 345 RMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILG 382
>gi|399526442|ref|ZP_10766221.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Actinomyces sp. ICM39]
gi|398363060|gb|EJN46710.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Actinomyces sp. ICM39]
Length = 781
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R L+ +L R HGSA + +G+T++L
Sbjct: 345 RMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILG 382
>gi|396583558|ref|ZP_10484087.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Actinomyces sp. ICM47]
gi|395548939|gb|EJG16106.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Actinomyces sp. ICM47]
Length = 781
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R L+ +L R HGSA + +G+T++L
Sbjct: 345 RMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILG 382
>gi|420151228|ref|ZP_14658360.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase, partial [Actinomyces georgiae
F0490]
gi|394772266|gb|EJF51606.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase, partial [Actinomyces georgiae
F0490]
Length = 786
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R L+ +L R HGSA + +G+T++L
Sbjct: 345 RMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILG 382
>gi|418620428|ref|ZP_13183232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
VCU122]
gi|374822558|gb|EHR86578.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
VCU122]
Length = 698
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL +L RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALS 356
>gi|320094033|ref|ZP_08025857.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
taxon 178 str. F0338]
gi|319979038|gb|EFW10557.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
taxon 178 str. F0338]
Length = 785
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R L+ +L R HGSA + +G+T++L
Sbjct: 345 RMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILG 382
>gi|314936565|ref|ZP_07843912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
subsp. hominis C80]
gi|313655184|gb|EFS18929.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
subsp. hominis C80]
Length = 698
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL +L RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALS 356
>gi|293192221|ref|ZP_06609390.1| polyribonucleotide nucleotidyltransferase [Actinomyces
odontolyticus F0309]
gi|292820337|gb|EFF79330.1| polyribonucleotide nucleotidyltransferase [Actinomyces
odontolyticus F0309]
Length = 781
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R L+ +L R HGSA + +G+T++L
Sbjct: 345 RMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILG 382
>gi|228475082|ref|ZP_04059810.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
SK119]
gi|228271067|gb|EEK12455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
SK119]
Length = 698
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL +L RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALS 356
>gi|154509089|ref|ZP_02044731.1| hypothetical protein ACTODO_01606 [Actinomyces odontolyticus ATCC
17982]
gi|153798723|gb|EDN81143.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Actinomyces odontolyticus ATCC
17982]
Length = 781
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R L+ +L R HGSA + +G+T++L
Sbjct: 345 RMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILG 382
>gi|315604465|ref|ZP_07879531.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
taxon 180 str. F0310]
gi|315314171|gb|EFU62222.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
taxon 180 str. F0310]
Length = 780
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R L+ +L R HGSA + +G+T++L
Sbjct: 345 RMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILG 382
>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
Length = 254
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR PN+LRP+ +L RA GS G KV+AA
Sbjct: 13 RLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAA 51
>gi|404493674|ref|YP_006717780.1| ribonuclease PH [Pelobacter carbinolicus DSM 2380]
gi|77545709|gb|ABA89271.1| ribonuclease PH [Pelobacter carbinolicus DSM 2380]
Length = 244
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL----------------------A 42
RADGR P++LRP+ A GS S G+T+VL A
Sbjct: 8 RADGRTPSELRPIYFSRGFTRYAEGSVLVSFGETRVLCNATVEEGVPSFLRGQGQGWITA 67
Query: 43 AKNENPEKVSIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTI 87
+ P + ++ G++G + E + ++ R+L++IC L +
Sbjct: 68 EYSMLPRATQVRSAREATRGKVGGRTSEIQRLIGRSLRAICDLEM 112
>gi|375337561|ref|ZP_09778905.1| polynucleotide phosphorylase/polyadenylase, partial
[Succinivibrionaceae bacterium WG-1]
Length = 450
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGRN +RPL +L R HGSA +++G+T+ + PEK
Sbjct: 319 RIDGRNTKMVRPLTVGTGLLPRVHGSALFTRGETQAMVTCTLAPEK 364
>gi|288800995|ref|ZP_06406451.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
taxon 299 str. F0039]
gi|288331929|gb|EFC70411.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
taxon 299 str. F0039]
Length = 743
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E R DGR P+++RP+ C S L HGSA +++G+T+ L+
Sbjct: 322 EGKRLDGRKPDEIRPIWCEVSTLPMPHGSALFTRGETQSLS 362
>gi|223985743|ref|ZP_03635787.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM
12042]
gi|223962253|gb|EEF66721.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM
12042]
Length = 731
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR ++LRPL +L R HGSA +++G+T+V++A
Sbjct: 319 RPDGRAVDELRPLNSQVDLLPRVHGSAMFTRGETQVMSA 357
>gi|119504363|ref|ZP_01626443.1| Polyribonucleotide nucleotidyltransferase [marine gamma
proteobacterium HTCC2080]
gi|119459871|gb|EAW40966.1| Polyribonucleotide nucleotidyltransferase [marine gamma
proteobacterium HTCC2080]
Length = 714
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ +RP+ C +L +AHGSA +++G+T+ + A
Sbjct: 314 RIDGRDGRTVRPIVCEVDVLDKAHGSALFTRGETQAIGA 352
>gi|83595114|ref|YP_428866.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum
ATCC 11170]
gi|386351881|ref|YP_006050129.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum
F11]
gi|123766875|sp|Q2RMR6.1|PNP_RHORT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|83578028|gb|ABC24579.1| 3' exoribonuclease [Rhodospirillum rubrum ATCC 11170]
gi|346720317|gb|AEO50332.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum
F11]
Length = 708
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ Y IL RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQAL 351
>gi|160892563|ref|ZP_02073353.1| hypothetical protein CLOL250_00092 [Clostridium sp. L2-50]
gi|156865604|gb|EDO59035.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. L2-50]
Length = 700
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR NQ+RPLA I+ R HGSA +++G T++
Sbjct: 315 RPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQI 350
>gi|302411144|ref|XP_003003405.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261357310|gb|EEY19738.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 249
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 15 RPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIG 65
+P S LHR GSA+++ D ++A+ ++E+P + I+V + G G
Sbjct: 4 QPAEGRLSHLHRTDGSATFAHNDHCIMASVNGPIEAQRRDEDPFEAVIDVTVRPAAGVGG 63
Query: 66 KQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+E++ E +L+ +LQ + P + + +QV
Sbjct: 64 TRERQLESLLQASLQQLICTKRFPRSVFQITLQV 97
>gi|456012652|gb|EMF46340.1| Polyribonucleotide nucleotidyltransferase [Planococcus
halocryophilus Or1]
Length = 705
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL+ IL+R HGS +++G T+ ++
Sbjct: 314 RPDGRGPSEIRPLSSEVGILNRTHGSGLFTRGQTQAMS 351
>gi|323489596|ref|ZP_08094823.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
MPA1U2]
gi|323396727|gb|EGA89546.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
MPA1U2]
Length = 705
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL+ IL+R HGS +++G T+ ++
Sbjct: 314 RPDGRGPSEIRPLSSEVGILNRTHGSGLFTRGQTQAMS 351
>gi|313892760|ref|ZP_07826341.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442691|gb|EFR61102.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
taxon 158 str. F0412]
Length = 689
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR +++RP++C +L R HGS +++G T+VL P
Sbjct: 310 RPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAP 353
>gi|225018458|ref|ZP_03707650.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
DSM 5476]
gi|224948767|gb|EEG29976.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
DSM 5476]
Length = 722
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
E R DGR +++RPLA +L R HGS +++G T+VL+ P
Sbjct: 331 EQKRVDGRGMDEIRPLAAEVGLLPRVHGSGLFTRGQTQVLSIATLGP 377
>gi|149200561|ref|ZP_01877570.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
HTCC2155]
gi|149136358|gb|EDM24802.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
HTCC2155]
Length = 696
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E RADGR LRPL+ S++ R HGSA +++G+T+ L
Sbjct: 312 EGKRADGRGAEDLRPLSAENSLMPRTHGSALFARGETQAL 351
>gi|414160588|ref|ZP_11416854.1| polyribonucleotide nucleotidyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878108|gb|EKS25997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 701
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL +L RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALS 356
>gi|269797830|ref|YP_003311730.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
gi|269094459|gb|ACZ24450.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
Length = 689
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP--EKVSIE 54
R DGR +++RP++C +L R HGS +++G T+VL P EK +I+
Sbjct: 310 RPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVITVAPLSEKQTID 361
>gi|146329836|ref|YP_001209934.1| polynucleotide phosphorylase/polyadenylase [Dichelobacter nodosus
VCS1703A]
gi|187610297|sp|A5EXU0.1|PNP_DICNV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146233306|gb|ABQ14284.1| polyribonucleotide nucleotidyltransferase [Dichelobacter nodosus
VCS1703A]
Length = 693
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ + S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTKTVRPITIHTSVLPRAHGSALFTRGETQAL 351
>gi|83945015|ref|ZP_00957381.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis sp.
HTCC2633]
gi|83851797|gb|EAP89652.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis sp.
HTCC2633]
Length = 709
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +Q+RP+ ++L R HGSA +++G+T+ LA
Sbjct: 317 RIDGRSLDQVRPIVSEATVLPRTHGSALFTRGETQALA 354
>gi|383754382|ref|YP_005433285.1| putative polyribonucleotide nucleotidyltransferase [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381366434|dbj|BAL83262.1| putative polyribonucleotide nucleotidyltransferase [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 689
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR ++RP++C +L RAHGS +++G T+++ P
Sbjct: 311 RPDGRGLEEVRPVSCEVGLLPRAHGSGLFTRGQTQIMTVTTLGP 354
>gi|328948917|ref|YP_004366254.1| polyribonucleotide nucleotidyltransferase [Treponema succinifaciens
DSM 2489]
gi|328449241|gb|AEB14957.1| Polyribonucleotide nucleotidyltransferase [Treponema succinifaciens
DSM 2489]
Length = 696
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+ C ++L R HGSA +++G+T+ LA
Sbjct: 314 RIDGRGTEDIRPITCEVNVLPRPHGSALFTRGETQSLA 351
>gi|417969047|ref|ZP_12610012.1| Polyribonucleotide nucleotidyltransferase, partial [Candidatus
Arthromitus sp. SFB-co]
gi|380338618|gb|EIA27495.1| Polyribonucleotide nucleotidyltransferase, partial [Candidatus
Arthromitus sp. SFB-co]
Length = 455
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
E R DGR+ +++RP++C SIL R HG+ +++G T+VL P
Sbjct: 60 ENRRPDGRDFDEIRPISCDISILPRTHGTGLFTRGLTQVLTIATLGP 106
>gi|238019453|ref|ZP_04599879.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
gi|237864152|gb|EEP65442.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
Length = 689
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR +++RP++C +L R HGS +++G T+VL P
Sbjct: 310 RPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAP 353
>gi|163814157|ref|ZP_02205549.1| hypothetical protein COPEUT_00311 [Coprococcus eutactus ATCC 27759]
gi|158450606|gb|EDP27601.1| polyribonucleotide nucleotidyltransferase [Coprococcus eutactus
ATCC 27759]
Length = 731
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR NQ+RPLA I+ R HGSA +++G T++
Sbjct: 348 RPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQI 383
>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
gi|29336819|sp|Q8TYC1.1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
Length = 239
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR P+++RPL +L RA GSA G K++AA + P++ +
Sbjct: 15 RLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVVR 74
Query: 55 VIWKSKTGQIGKQEK--------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ + ++++ E + K L+ P T + ++V
Sbjct: 75 FRYNMAPFSVDERKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVL 128
>gi|403745562|ref|ZP_10954357.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
hesperidum URH17-3-68]
gi|403121280|gb|EJY55594.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
hesperidum URH17-3-68]
Length = 704
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP++C +L R HGSA +++G T+ L+
Sbjct: 311 RPDGRKLDEIRPISCEVGLLPRTHGSALFTRGQTQALS 348
>gi|365175340|ref|ZP_09362770.1| polyribonucleotide nucleotidyltransferase [Synergistes sp.
3_1_syn1]
gi|363612904|gb|EHL64430.1| polyribonucleotide nucleotidyltransferase [Synergistes sp.
3_1_syn1]
Length = 774
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR ++LRP+ C IL HGSA +++G+T+ L
Sbjct: 312 RADGRAMDELRPITCEIDILPMTHGSALFTRGETQSLG 349
>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
Length = 246
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR PN+ R + C + +A GSA QG+ KVLAA
Sbjct: 13 RLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAA 51
>gi|145344077|ref|XP_001416565.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576791|gb|ABO94858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 823
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR + +RP+AC IL R HGS+ +++G+T+ +
Sbjct: 378 RQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIG 415
>gi|220931634|ref|YP_002508542.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
168]
gi|254782723|sp|B8CW78.1|PNP_HALOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219992944|gb|ACL69547.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
168]
Length = 705
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RP+ C L R HGS +++G T+ L+
Sbjct: 321 RPDGRKPDEIRPIWCEVGTLPRVHGSGVFTRGQTQALS 358
>gi|358053039|ref|ZP_09146832.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus simiae
CCM 7213]
gi|357257469|gb|EHJ07733.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus simiae
CCM 7213]
Length = 699
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL +L RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGLLPRAHGSGLFTRGQTQALS 356
>gi|340727523|ref|XP_003402091.1| PREDICTED: exosome complex component MTR3-like [Bombus terrestris]
Length = 273
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------KNENPEKVSIEVI 56
+R+D R N++R + I+ +A GSA G+TKV+ + N+N E+
Sbjct: 36 ERSDKRTNNEMRKIFLKAGIVSQAKGSAYIELGNTKVVCSVFDPREVSNKNSYYAQGEIY 95
Query: 57 ----------WKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
K K Q +EK+Y +IL+R L+ L PN V + V
Sbjct: 96 CEFKFAPFSCQKRKVHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYVMVL 149
>gi|302392342|ref|YP_003828162.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
DSM 5501]
gi|302204419|gb|ADL13097.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
DSM 5501]
Length = 708
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR+ +++RP+ C +L RAHGS +++G T+V+
Sbjct: 315 EGKRVDGRDLDEVRPIWCEVDVLPRAHGSGIFTRGQTQVM 354
>gi|291544643|emb|CBL17752.1| polyribonucleotide nucleotidyltransferase [Ruminococcus
champanellensis 18P13]
Length = 706
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
E R DGR +++RPLA +L R HGS +++G T+VL P
Sbjct: 311 EGKRVDGRGIDEIRPLAAEVGVLPRVHGSGLFTRGQTQVLTVATLGP 357
>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 246
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ N+LRPL IL A+GSA G+ KVLAA
Sbjct: 16 RLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAA 54
>gi|255073611|ref|XP_002500480.1| predicted protein [Micromonas sp. RCC299]
gi|226515743|gb|ACO61738.1| predicted protein [Micromonas sp. RCC299]
Length = 838
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ +RP+ C +L R HGS+ +++G+T+ +AA
Sbjct: 408 RQDGRDTKTVRPITCSGGLLPRTHGSSLFTRGETQAIAA 446
>gi|350422333|ref|XP_003493132.1| PREDICTED: exosome complex component RRP46-like [Bombus impatiens]
Length = 220
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 13 QLRPLACYCSILHRAHGSASWSQGDTKVLA-------AKNENP--EKVSIEVIWKSKTGQ 63
+LRP+ C + L GSA QG+T V+A AK + +K S+EV + G
Sbjct: 11 RLRPMNCELNQLSMPDGSAMLMQGNTAVVAGIYGPIEAKPQKMIYDKASVEVSYSPIKGP 70
Query: 64 IGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++ EM +K T ++ I+T +P T + IQ
Sbjct: 71 AKVDDRMTEMYIKETCEAAIIVTFHPATAICINIQ 105
>gi|338813338|ref|ZP_08625467.1| polynucleotide phosphorylase/polyadenylase [Acetonema longum DSM
6540]
gi|337274697|gb|EGO63205.1| polynucleotide phosphorylase/polyadenylase [Acetonema longum DSM
6540]
Length = 696
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C +L R HGS +++G T+VL
Sbjct: 311 RPDGRKLDEVRPISCEVGVLARTHGSGLFTRGQTQVL 347
>gi|384499406|gb|EIE89897.1| hypothetical protein RO3G_14608 [Rhizopus delemar RA 99-880]
Length = 135
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 21/116 (18%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVS-----------I 53
R DGR N+LR + S+ +A GSA QG+TK LAA P +V I
Sbjct: 13 RVDGRRANELRKITAKTSVFSQADGSAYIEQGNTKCLAAVY-GPREVRHRMQALSDRAII 71
Query: 54 EVIW---------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K + K+ E +++T + + + T P + + +QV+
Sbjct: 72 NVEFNIAPFSTSERKKRSKNDKRSLEVAAFIRQTFEPVVLTTQFPRSQIDIYLQVF 127
>gi|257457660|ref|ZP_05622827.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC
35580]
gi|257445046|gb|EEV20122.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC
35580]
Length = 703
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+ C +L R HGSA +++G+T+ LA
Sbjct: 319 RVDGRGLEDIRPITCEIGVLPRPHGSAVFTRGETQSLA 356
>gi|258511422|ref|YP_003184856.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478148|gb|ACV58467.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 735
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP++C +L R HGSA +++G T+ L+
Sbjct: 311 RPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALS 348
>gi|384135122|ref|YP_005517836.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289207|gb|AEJ43317.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 735
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP++C +L R HGSA +++G T+ L+
Sbjct: 311 RPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALS 348
>gi|419623216|ref|ZP_14156347.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
subsp. jejuni LMG 23218]
gi|380601394|gb|EIB21705.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
subsp. jejuni LMG 23218]
Length = 719
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGR+ N++RP++ +IL AHGS +++G T+ L
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQAL 372
>gi|317121863|ref|YP_004101866.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
marianensis DSM 12885]
gi|315591843|gb|ADU51139.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
marianensis DSM 12885]
Length = 752
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR P+++RP+ +L RAHGS + +G T+VL
Sbjct: 321 RPDGRRPDEIRPIHVEVGLLPRAHGSGLFQRGQTQVL 357
>gi|420153512|ref|ZP_14660472.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase, partial [Actinomyces
massiliensis F0489]
gi|394759324|gb|EJF42082.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase, partial [Actinomyces
massiliensis F0489]
Length = 776
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R LA +L R HGSA + +G+T++L N
Sbjct: 345 RMDGRGPKDIRTLAAEVEVLPRVHGSAIFERGETQILGVTTLN 387
>gi|386860044|ref|YP_006272750.1| Polyribonucleotide nucleotidyltransferase [Borrelia crocidurae str.
Achema]
gi|384934925|gb|AFI31598.1| Polyribonucleotide nucleotidyltransferase [Borrelia crocidurae str.
Achema]
Length = 717
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R + +L R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALA 353
>gi|225708764|gb|ACO10228.1| Exosome complex exonuclease MTR3 [Caligus rogercresseyi]
Length = 278
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 5 RADGRNPNQL--RPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSKTG 62
R DG + RPL C IL ++ GSA +G TKVLA+ P +VS ++ + S G
Sbjct: 37 RLDGEREKDISVRPLFCEVGILTQSKGSAYLERGRTKVLASVF-GPREVSKKLDFSSTAG 95
Query: 63 QIG-----------------KQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ +E++ + L +TL+S L + P + V I V
Sbjct: 96 SLNVEYKEAPFASRSDGRGEAKERDVGLFLAQTLRSTVCLHLYPKSRIDVCITVL 150
>gi|203288233|ref|YP_002223248.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1]
gi|226702624|sp|B5RQE3.1|PNP_BORRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|201085453|gb|ACH95027.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1]
Length = 717
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R + +L R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALA 353
>gi|203284701|ref|YP_002222441.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly]
gi|226702622|sp|B5RMZ9.1|PNP_BORDL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|201084144|gb|ACH93735.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly]
Length = 717
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R + +L R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALA 353
>gi|383852760|ref|XP_003701893.1| PREDICTED: exosome complex component RRP46-like [Megachile
rotundata]
Length = 220
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 9 RNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA-------AKNENP--EKVSIEVIWKS 59
N LRP+ C + L GSA QGDT V+A AK + +K +EV +
Sbjct: 7 ENEFVLRPINCEMNQLSMPDGSAMLMQGDTAVIAGVYGPVEAKPQKMIYDKAFVEVSYTP 66
Query: 60 KTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
G ++ EM +K T ++ I+T +P T + IQ
Sbjct: 67 IKGPAKVDDRMTEMYIKETCETAIIVTFHPATAICINIQ 105
>gi|415745627|ref|ZP_11475083.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
327]
gi|315932402|gb|EFV11345.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
327]
Length = 720
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGR+ N++RP++ +IL AHGS +++G T+ L
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQAL 372
>gi|346466185|gb|AEO32937.1| hypothetical protein [Amblyomma maculatum]
Length = 284
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P++ R +AC + +A GSA QG+ KVLAA
Sbjct: 51 RLDGRKPSEQRKIACRLGVFGQADGSAYIEQGNAKVLAA 89
>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
Length = 242
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKV------------- 51
R DGR P LRP+ +L A GSA G T VLAA E V
Sbjct: 14 RHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRAVIR 73
Query: 52 ------SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
S + + K+ ++E E +++ L+ I ++ P T + ++V
Sbjct: 74 CRYRMLSFSTLGERKSPAPSRREIELSKVIREALEPAIISSMYPRTAIDIFVEV 127
>gi|269926894|ref|YP_003323517.1| Polyribonucleotide nucleotidyltransferase [Thermobaculum terrenum
ATCC BAA-798]
gi|269790554|gb|ACZ42695.1| Polyribonucleotide nucleotidyltransferase [Thermobaculum terrenum
ATCC BAA-798]
Length = 733
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P ++RP++ +L R HGSA +++G T++++
Sbjct: 315 RPDGRGPKEIRPVSAEVGLLPRTHGSALFTRGQTQIIS 352
>gi|224476402|ref|YP_002634008.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus carnosus
subsp. carnosus TM300]
gi|254782735|sp|B9DPE0.1|PNP_STACT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222421009|emb|CAL27823.1| polyribonucleotide nucleotidyltransferase [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 701
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL +L RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGLLPRAHGSGLFTRGQTQALS 356
>gi|218290095|ref|ZP_03494257.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius LAA1]
gi|218239804|gb|EED06993.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius LAA1]
Length = 735
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP++C +L R HGSA +++G T+ L+
Sbjct: 311 RPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALS 348
>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
Length = 245
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN----------PEKVSIE 54
R DGR P++LRP+ +L A GS+ G+TK++AA P + ++
Sbjct: 16 RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
V + + K+ ++E E +++ L+S ++ P ++ V ++V
Sbjct: 76 VRYHMTPFSTDERKSPVPSRREIELSKVIREALESSVLVEQFPRSSIDVFMEV 128
>gi|409048701|gb|EKM58179.1| hypothetical protein PHACADRAFT_88763 [Phanerochaete carnosa
HHB-10118-sp]
Length = 290
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKN---------ENPEKVSIEV 55
R DGR+ ++LRP+ L R GSA + G T+ LA+ + E P + ++E+
Sbjct: 7 RHDGRDNDELRPVTIKYEGLDRVDGSAKFGFGQTQALASLSGPIEIRPNLELPSQATLEI 66
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+ G + LK L +L+ +P T ++ Q
Sbjct: 67 HIRPLASVPGTDSRALAATLKAVLSPSLLLSHHPRTLVQIVGQA 110
>gi|383858041|ref|XP_003704511.1| PREDICTED: exosome complex component MTR3-like [Megachile
rotundata]
Length = 274
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------KNENPEKVSIEVI 56
+R+D R N++R + ++ +A GSA GDTKV+ + N+N V E+
Sbjct: 36 NRSDKRTNNEIRKIFLKTGVVSQAKGSAYIEMGDTKVVCSVFDPREIPNKNGYCVQGEIY 95
Query: 57 ----------WKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
K K Q +EK+Y +IL+R L+ L PN V V
Sbjct: 96 CEFKFASFSCQKRKIHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYAMVL 149
>gi|308801345|ref|XP_003077986.1| putative polynucleotide phosphorylase (ISS) [Ostreococcus tauri]
gi|116056437|emb|CAL52726.1| putative polynucleotide phosphorylase (ISS) [Ostreococcus tauri]
Length = 615
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAK----NENPEKV 51
R DGR +RP+AC +L R HGSA +++G+T+ + N++ ++V
Sbjct: 428 RQDGRTTRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGNQDAQRV 478
>gi|429736062|ref|ZP_19269980.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429156182|gb|EKX98819.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 689
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C IL R HGS +++G T+VL
Sbjct: 311 RPDGRALDEVRPVSCEVGILPRTHGSGLFTRGQTQVL 347
>gi|427405764|ref|ZP_18895969.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. F0473]
gi|425708605|gb|EKU71644.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. F0473]
Length = 690
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C IL R HGS +++G T+VL
Sbjct: 311 RPDGRALDEVRPVSCEVGILPRTHGSGLFTRGQTQVL 347
>gi|401564576|ref|ZP_10805458.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. FOBRC6]
gi|400188678|gb|EJO22825.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. FOBRC6]
Length = 689
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C IL R HGS +++G T+VL
Sbjct: 311 RPDGRALDEVRPVSCEVGILPRTHGSGLFTRGQTQVL 347
>gi|357057943|ref|ZP_09118800.1| polyribonucleotide nucleotidyltransferase [Selenomonas infelix ATCC
43532]
gi|355374520|gb|EHG21814.1| polyribonucleotide nucleotidyltransferase [Selenomonas infelix ATCC
43532]
Length = 689
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C IL R HGS +++G T+VL
Sbjct: 311 RPDGRALDEVRPVSCEVGILPRTHGSGLFTRGQTQVL 347
>gi|334127878|ref|ZP_08501780.1| polyribonucleotide nucleotidyltransferase [Centipeda periodontii
DSM 2778]
gi|333388599|gb|EGK59773.1| polyribonucleotide nucleotidyltransferase [Centipeda periodontii
DSM 2778]
Length = 689
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C IL R HGS +++G T+VL
Sbjct: 311 RPDGRALDEVRPVSCEVGILPRTHGSGLFTRGQTQVL 347
>gi|374335287|ref|YP_005091974.1| polynucleotide phosphorylase/polyadenylase [Oceanimonas sp. GK1]
gi|372984974|gb|AEY01224.1| polynucleotide phosphorylase/polyadenylase [Oceanimonas sp. GK1]
Length = 715
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR P+ +R L +L RAHGSA +++G+T+ L A E+
Sbjct: 314 RIDGREPDMIRALNVATGLLPRAHGSALFTRGETQALVAATLGTER 359
>gi|365839070|ref|ZP_09380319.1| polyribonucleotide nucleotidyltransferase [Anaeroglobus geminatus
F0357]
gi|364565638|gb|EHM43355.1| polyribonucleotide nucleotidyltransferase [Anaeroglobus geminatus
F0357]
Length = 715
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR N++RP++C + R HG+ +++G T++L+
Sbjct: 313 RPDGRKVNEVRPVSCEAGLFRRTHGTGLFTRGQTQILS 350
>gi|297623850|ref|YP_003705284.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix
DSM 17093]
gi|297165030|gb|ADI14741.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix
DSM 17093]
Length = 726
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P +RP+ +L + HGSA +++G+T+VL
Sbjct: 322 RADGRAPEDIRPIWIEVGVLPKTHGSAVFTRGETQVLG 359
>gi|405971078|gb|EKC35934.1| Exosome complex exonuclease RRP41 [Crassostrea gigas]
Length = 245
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPE-----------KVSI 53
R DGR ++LR + C + +A GSA QG+TKVLAA E KV +
Sbjct: 13 RIDGRRSHELRKIQCKLGVFSQADGSAYVEQGNTKVLAAVYGPHEIRGSRSKLLQDKVLV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ T ++++ E M L++T + + +++P + + ++V
Sbjct: 73 NCQYSMATFSTSERKRRPRGDRKSQEMTMHLQQTFNAAILTSLHPRSQIDIFVEVL 128
>gi|257096723|sp|B3DZ86.2|PNP_METI4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 707
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTK-----VLAAKNENPE 49
R DGR P +RP+A S++ R+HGS+ + +G+T+ LA+ NE E
Sbjct: 313 RCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQE 362
>gi|332708787|ref|ZP_08428758.1| polyribonucleotide nucleotidyltransferase [Moorea producens 3L]
gi|332352329|gb|EGJ31898.1| polyribonucleotide nucleotidyltransferase [Moorea producens 3L]
Length = 716
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 5 RADGRNPNQLRPLACYCSIL-HRAHGSASWSQGDTKVLA 42
R DGR +Q+RP++C S+L R HGSA +++G T+VL+
Sbjct: 324 RVDGRKLDQVRPVSCQTSLLPQRVHGSALFNRGLTQVLS 362
>gi|304436486|ref|ZP_07396460.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304370532|gb|EFM24183.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 690
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C IL R HGS +++G T+VL
Sbjct: 312 RPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVL 348
>gi|238926818|ref|ZP_04658578.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei
ATCC 43531]
gi|238885350|gb|EEQ48988.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei
ATCC 43531]
Length = 689
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C IL R HGS +++G T+VL
Sbjct: 311 RPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVL 347
>gi|449451735|ref|XP_004143616.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
gi|449516461|ref|XP_004165265.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
Length = 241
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 21/116 (18%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA------------KNENPEKVS 52
R DGR P +LR + + +A+GSA + G+TKVLAA + N V
Sbjct: 10 RQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVR 69
Query: 53 IE-VIWKSKTGQIGKQEK------EYEMILKRTLQSICILT-INPNTTTSVIIQVW 100
E + TG ++ K E +++++T++ CILT + P + + +QV
Sbjct: 70 CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CILTHLMPRSQIDIFVQVL 124
>gi|451343585|ref|ZP_21912656.1| polyribonucleotide nucleotidyltransferase [Eggerthia catenaformis
OT 569 = DSM 20559]
gi|449337682|gb|EMD16839.1| polyribonucleotide nucleotidyltransferase [Eggerthia catenaformis
OT 569 = DSM 20559]
Length = 710
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL +L R HGSA +++G+T+V++A
Sbjct: 319 RPDGRQVDEIRPLDAQVDLLPRVHGSALFTRGETQVMSA 357
>gi|406927656|gb|EKD63654.1| hypothetical protein ACD_51C00238G0006 [uncultured bacterium]
Length = 708
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R D R P+ +RP+ C +L R HGSA + +G+T+ L
Sbjct: 320 RLDARKPSDIRPIKCSVGVLPRTHGSALFQRGETQAL 356
>gi|189220135|ref|YP_001940775.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Methylacidiphilum infernorum V4]
gi|189186993|gb|ACD84178.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Methylacidiphilum infernorum V4]
Length = 669
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTK-----VLAAKNENPE 49
R DGR P +RP+A S++ R+HGS+ + +G+T+ LA+ NE E
Sbjct: 275 RCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQE 324
>gi|374340410|ref|YP_005097146.1| polyribonucleotide nucleotidyltransferase [Marinitoga piezophila
KA3]
gi|372101944|gb|AEX85848.1| polyribonucleotide nucleotidyltransferase [Marinitoga piezophila
KA3]
Length = 720
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR +++RP+ C + + HGSA +++G+T+ L
Sbjct: 318 ENTRADGRKIDEIRPITCEVGLFEKTHGSALFTRGETQSLG 358
>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
Length = 247
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSI 53
R DGR N+LR + + +RA GSA + QG+TK++AA P ++S+
Sbjct: 13 RIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAV-YGPREISV 60
>gi|266619741|ref|ZP_06112676.1| polyribonucleotide nucleotidyltransferase, partial [Clostridium
hathewayi DSM 13479]
gi|288868702|gb|EFD01001.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
DSM 13479]
Length = 551
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +Q+RPLA +L R HGSA +++G T++L
Sbjct: 312 RPDGRAIDQIRPLAAEIDMLPRVHGSAMFTRGQTQIL 348
>gi|410721458|ref|ZP_11360793.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
gi|410598915|gb|EKQ53478.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
Length = 249
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR ++LRPL +L RA GS+ GD KVLAA
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSSYVEIGDNKVLAA 64
>gi|406830939|ref|ZP_11090533.1| polynucleotide phosphorylase/polyadenylase [Schlesneria paludicola
DSM 18645]
Length = 713
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
+E R DGR P LR ++C +L HGSA +++G+T+ LA
Sbjct: 311 LENKRLDGRTPQDLRAVSCEVGVLPGVHGSALFTRGETQSLA 352
>gi|399055584|ref|ZP_10743279.1| polyribonucleotide nucleotidyltransferase [Brevibacillus sp. CF112]
gi|398046793|gb|EJL39377.1| polyribonucleotide nucleotidyltransferase [Brevibacillus sp. CF112]
Length = 715
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR N++RPL+ IL R HGSA +++G T+ L+
Sbjct: 318 RPDGRALNEIRPLSSETGILSRTHGSAMFTRGQTQALS 355
>gi|88705689|ref|ZP_01103399.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis
KT71]
gi|88700202|gb|EAQ97311.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis
KT71]
Length = 704
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ +R +AC IL +AHGSA +++G+T+ + A
Sbjct: 314 RIDGRDTRTVRQIACEVDILSKAHGSALFTRGETQAIGA 352
>gi|229918674|ref|YP_002887320.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium sp.
AT1b]
gi|259534123|sp|C4L6J6.1|PNP_EXISA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|229470103|gb|ACQ71875.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium sp.
AT1b]
Length = 738
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+ +RPLA +L RAHG +++G T+V++
Sbjct: 316 RPDGRRPDVIRPLASEVGLLPRAHGVGLFTRGQTQVMS 353
>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|108870517|gb|EAT34742.1| AAEL013045-PA [Aedes aegypti]
gi|108870766|gb|EAT34991.1| AAEL012812-PA [Aedes aegypti]
Length = 245
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA---------AKNENPEKVSIEV 55
R DGR N+LR + C + + GSA QG+TKVLA AK + E+V +
Sbjct: 10 RLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVYGPHQAPAKKSSHEEVIVNC 69
Query: 56 IWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ T G++++ E + L++ L + + P + V I+V
Sbjct: 70 QYSMATFSTGERKRRPRGDRKSQEMTIHLQQALSAAIKTELYPKSQIDVYIEVL 123
>gi|384082724|ref|ZP_09993899.1| polynucleotide phosphorylase/polyadenylase [gamma proteobacterium
HIMB30]
Length = 691
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 3 IDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
+ R DGR+ +RP+ C +L RAHGSA +++G+T+ +
Sbjct: 312 LPRIDGRDQKTVRPINCDVGMLKRAHGSAVFTRGETQAI 350
>gi|149193793|ref|ZP_01870891.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
mediatlanticus TB-2]
gi|149135746|gb|EDM24224.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
mediatlanticus TB-2]
Length = 725
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR +++RP++ ++L RAHGS +++G T+ LA
Sbjct: 342 RADGRKLDEIRPISIETNVLPRAHGSCLFTRGQTQALA 379
>gi|398412181|ref|XP_003857419.1| hypothetical protein MYCGRDRAFT_30576, partial [Zymoseptoria
tritici IPO323]
gi|339477304|gb|EGP92395.1| hypothetical protein MYCGRDRAFT_30576 [Zymoseptoria tritici
IPO323]
Length = 202
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 24 LHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYEMI 74
L RA GS ++S V+A ++E PE+ +IEV + +G G +E+ E +
Sbjct: 1 LARADGSTAFSSDLYTVVAGVNGPVEVQRRDELPEEAAIEVNLRPISGVGGPRERWLETV 60
Query: 75 LKRTLQSICILTINPNTTTSVIIQV 99
L L+S+ ++ ++P T + +QV
Sbjct: 61 LHAVLKSVLLVNMHPRTLIQITLQV 85
>gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
ferrooxydans PV-1]
gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
ferrooxydans PV-1]
Length = 705
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR NQ+R + C +L R HGSA +++G+T+ L
Sbjct: 326 RIDGRATNQVRAIDCQVGVLPRTHGSALFTRGETQAL 362
>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii
ATCC 35061]
gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
Length = 234
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSKT 61
E+ R DGR N+LRP+ +L RA GSA G K+L A P + I + + T
Sbjct: 4 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVY-GPRESYIRRLLEPNT 62
Query: 62 GQI 64
G I
Sbjct: 63 GVI 65
>gi|328950321|ref|YP_004367656.1| polyribonucleotide nucleotidyltransferase [Marinithermus
hydrothermalis DSM 14884]
gi|328450645|gb|AEB11546.1| Polyribonucleotide nucleotidyltransferase [Marinithermus
hydrothermalis DSM 14884]
Length = 722
Score = 42.0 bits (97), Expect = 0.053, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P +R + +L RAHGSA +++G+T+VL
Sbjct: 333 RADGRGPTDIRDIWIEVDVLPRAHGSAIFTRGETQVLG 370
>gi|452848085|gb|EME50017.1| hypothetical protein DOTSEDRAFT_68766 [Dothistroma septosporum
NZE10]
Length = 240
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 24 LHRAHGSASWSQGDTKVLAAKN---------ENPEKVSIEVIWKSKTGQIGKQEKEYEMI 74
L RA GS + G V+AA N E PE+ +IEV + +G G +E+ E +
Sbjct: 10 LERADGSTIFGDGLYTVIAAANGPVEVQRRDELPEEAAIEVNLRPLSGVGGPRERWLENL 69
Query: 75 LKRTLQSICILTINPNTTTSVIIQV 99
L+ L+ I ++ ++P T V +Q+
Sbjct: 70 LQPLLEKILLVHMHPRTLIQVTLQI 94
>gi|337288705|ref|YP_004628177.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobacterium
sp. OPB45]
gi|334902443|gb|AEH23249.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobacterium
geofontis OPF15]
Length = 702
Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKN-ENPEKVS-IEVIWKS 59
E R DGR P+++RP+ R HGSA +++G T+V A +PE+ +E I++
Sbjct: 308 EGKRIDGRTPDEIRPIEIKIHPFERPHGSAIFTRGQTQVFATVTLGSPEEAQMVESIYEG 367
Query: 60 KT 61
+T
Sbjct: 368 ET 369
>gi|332017453|gb|EGI58176.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
[Acromyrmex echinatior]
Length = 616
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+P+ LR ++C + + HGSA + +G T+V+
Sbjct: 204 RCDGRSPSHLRDISCQVDLFNPLHGSAVFQRGQTQVM 240
>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
DSM 5348]
Length = 245
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN----------PEKVSIE 54
R DGR P++LRP+ +L A GS+ G+TK++AA P + ++
Sbjct: 16 RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
V + + K+ ++E E +++ L+S ++ P ++ V ++V
Sbjct: 76 VRYHMTPFSTDERKSPVPSRREIELSKVIREALESSILVEQFPRSSIDVFMEV 128
>gi|392988068|ref|YP_006486661.1| polynucleotide phosphorylase/polyadenylase [Enterococcus hirae ATCC
9790]
gi|392335488|gb|AFM69770.1| polynucleotide phosphorylase/polyadenylase [Enterococcus hirae ATCC
9790]
Length = 707
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPLA S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLASEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|332030317|gb|EGI70060.1| Exosome complex exonuclease MTR3 [Acromyrmex echinatior]
Length = 282
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 17/113 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---KNENPEKVSI----EVIW 57
R D R+ N+LR + I+ +A GSA G+TKV+ + E P K E+
Sbjct: 37 RHDDRSDNELRNIFLKTGIVSQAKGSAYIEMGNTKVICSVFDPREIPNKTGFCMQGELFC 96
Query: 58 ----------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
K K Q +EKEY +IL+R L+ L PN V V
Sbjct: 97 EFKFASFSHRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVL 149
>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
Length = 248
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSK---- 60
R DGR N++R L I +RA GSA + QG+TK+ A E S + + +
Sbjct: 13 RIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTKITVAVYGPREVASNQRMLHDRAIVN 72
Query: 61 ----------------TGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
T + KQ E ++K+ +S +T+ P + + +QV
Sbjct: 73 CEYSQAAFSSATDRKPTRKSDKQSYEIASLIKQAFESTIQITLFPRSQIDIYVQVL 128
>gi|242022707|ref|XP_002431780.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517105|gb|EEB19042.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 191
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 13 QLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKV-----SIEVIWKSKTGQ 63
++R + C L R GSA ++ GDT L+A P+K+ ++EV++KSK G
Sbjct: 5 EMRNIHCELDPLSRPDGSALFALGDTMTLSAVYGPAEVRPQKLLTENATVEVLFKSKNGV 64
Query: 64 IGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
+K E+ L ++ + + +P T+ S+I+Q
Sbjct: 65 PSISDKIKEVSLNNICKTAILSSQHPRTSISIIVQ 99
>gi|167772649|ref|ZP_02444702.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM
17241]
gi|167665127|gb|EDS09257.1| polyribonucleotide nucleotidyltransferase [Anaerotruncus
colihominis DSM 17241]
Length = 706
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR +++RPLA +L R HGS +++G T+VL
Sbjct: 312 EQKRVDGRKMDEIRPLAAEVGLLPRVHGSGMFTRGQTQVL 351
>gi|389815272|ref|ZP_10206618.1| polynucleotide phosphorylase/polyadenylase [Planococcus antarcticus
DSM 14505]
gi|388466051|gb|EIM08360.1| polynucleotide phosphorylase/polyadenylase [Planococcus antarcticus
DSM 14505]
Length = 705
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL+ +L+R HGS +++G T+ ++
Sbjct: 314 RPDGRGPSEIRPLSSEVGVLNRTHGSGLFTRGQTQAMS 351
>gi|420155940|ref|ZP_14662791.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. MSTE9]
gi|394758267|gb|EJF41188.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. MSTE9]
Length = 739
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
E R DGR +++RPLA +L R HGS +++G T+VL P
Sbjct: 312 ERKRVDGRGMDEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTIVTLGP 358
>gi|419784920|ref|ZP_14310678.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-M]
gi|383363521|gb|EID40853.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-M]
Length = 590
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|418649671|ref|ZP_13211699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-91]
gi|418948149|ref|ZP_13500478.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-157]
gi|375030044|gb|EHS23369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-91]
gi|375373429|gb|EHS77102.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-157]
Length = 590
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|418647509|ref|ZP_13209573.1| polyribonucleotide nucleotidyltransferase, partial [Staphylococcus
aureus subsp. aureus IS-88]
gi|375029475|gb|EHS22802.1| polyribonucleotide nucleotidyltransferase, partial [Staphylococcus
aureus subsp. aureus IS-88]
Length = 597
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|293510045|ref|ZP_06668753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M809]
gi|291466989|gb|EFF09507.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M809]
Length = 580
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM
2374]
gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM
2374]
Length = 234
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSKT 61
E+ R DGR N+LRP+ +L RA GSA G K+L A P + I + + T
Sbjct: 4 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVY-GPRESYIRRLLEPNT 62
Query: 62 GQI 64
G I
Sbjct: 63 GVI 65
>gi|418951035|ref|ZP_13503164.1| polyribonucleotide nucleotidyltransferase, partial [Staphylococcus
aureus subsp. aureus IS-160]
gi|375374854|gb|EHS78473.1| polyribonucleotide nucleotidyltransferase, partial [Staphylococcus
aureus subsp. aureus IS-160]
Length = 593
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|449303034|gb|EMC99042.1| hypothetical protein BAUCODRAFT_41389, partial [Baudoinia
compniacensis UAMH 10762]
Length = 198
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 24 LHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYEMI 74
L RA GS S+S +LAA ++E PE+ +IEV + G G +E+ E +
Sbjct: 10 LSRADGSVSFSNNLYTILAAVNGPVEVQRRDELPEEAAIEVNIRPVAGVGGPRERWLESV 69
Query: 75 LKRTLQSICILTINPNTTTSVIIQV 99
+ L+S+ ++ ++P T + +Q+
Sbjct: 70 VTAVLRSVLLVHMHPRTLIQITLQI 94
>gi|312898454|ref|ZP_07757844.1| polyribonucleotide nucleotidyltransferase [Megasphaera
micronuciformis F0359]
gi|310620373|gb|EFQ03943.1| polyribonucleotide nucleotidyltransferase [Megasphaera
micronuciformis F0359]
Length = 717
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR N++RP++C + R HG+ +++G T++L+
Sbjct: 313 RPDGRKVNEVRPVSCEVGLFKRTHGTGLFTRGQTQILS 350
>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
DSM 2375]
gi|222434092|gb|EEE41257.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM
2375]
Length = 233
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSKT 61
E+ R DGR N+LRP+ +L RA GSA G K+L A P + I + + T
Sbjct: 3 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVY-GPRESYIRRLLEPNT 61
Query: 62 GQI 64
G I
Sbjct: 62 GVI 64
>gi|301063439|ref|ZP_07203971.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
NaphS2]
gi|300442378|gb|EFK06611.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
NaphS2]
Length = 697
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTK--VLAAKNENPEKVSIEVIW 57
E R DGR N++RP+ C +L R HGSA +++G+T+ VL ++ IE I+
Sbjct: 309 EGKRIDGRAFNEVRPIECLVGLLPRIHGSALFTRGETQAMVLTTLGTERDRQRIESIF 366
>gi|375082087|ref|ZP_09729157.1| exosome complex RNA-binding protein Rrp42 [Thermococcus litoralis
DSM 5473]
gi|374743300|gb|EHR79668.1| exosome complex RNA-binding protein Rrp42 [Thermococcus litoralis
DSM 5473]
Length = 269
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P LRPL +++ +A GSA G+T+VL
Sbjct: 21 RIDGRGPEDLRPLTIETNVIEKAEGSALVKLGNTQVLVG 59
>gi|320160467|ref|YP_004173691.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
UNI-1]
gi|319994320|dbj|BAJ63091.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
UNI-1]
Length = 760
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R D R P ++RP+ C I RAHGS +++G+T+VL
Sbjct: 316 RPDHRTPTEIRPIWCEVGISPRAHGSGLFTRGETQVL 352
>gi|159900395|ref|YP_001546642.1| polynucleotide phosphorylase [Herpetosiphon aurantiacus DSM 785]
gi|257096698|sp|A9B8G1.1|PNP_HERA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|159893434|gb|ABX06514.1| Polyribonucleotide nucleotidyltransferase [Herpetosiphon
aurantiacus DSM 785]
Length = 777
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR N++RP+A +L R HGS +++G T+VL
Sbjct: 321 RVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVL 357
>gi|379795641|ref|YP_005325639.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MSHR1132]
gi|356872631|emb|CCE58970.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MSHR1132]
Length = 698
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|406956735|gb|EKD84787.1| hypothetical protein ACD_38C00161G0008 [uncultured bacterium]
Length = 772
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP+ IL R HGSA + +GDT+VL+
Sbjct: 315 RVDGRAMDEIRPIEMEVGILPRTHGSALFQRGDTQVLS 352
>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
Length = 236
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSKTGQI 64
R DGR ++LRP+ +L RA GSA G K+LA+ P + I + K TG I
Sbjct: 12 RGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNKILASVY-GPRESYIRRLLKPNTGVI 70
>gi|407785042|ref|ZP_11132191.1| polynucleotide phosphorylase/polyadenylase [Celeribacter
baekdonensis B30]
gi|407204744|gb|EKE74725.1| polynucleotide phosphorylase/polyadenylase [Celeribacter
baekdonensis B30]
Length = 710
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR +Q+RP+ C +L R HGSA +++G+T+ L
Sbjct: 315 EGKRIDGRALDQVRPIVCETGLLPRTHGSALFTRGETQGL 354
>gi|337286994|ref|YP_004626467.1| polyribonucleotide nucleotidyltransferase [Thermodesulfatator
indicus DSM 15286]
gi|335359822|gb|AEH45503.1| polyribonucleotide nucleotidyltransferase [Thermodesulfatator
indicus DSM 15286]
Length = 708
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA-AKNENPEK 50
E R DGR P +RP+ S+L R HGS +++G+T+VL A +PE+
Sbjct: 308 ENRRIDGRGPEDIRPIWAEVSVLPRTHGSVIFTRGETQVLTVATLGSPEE 357
>gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis
RB2256]
gi|123380103|sp|Q1GVQ8.1|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256]
Length = 771
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E R DGR Q+RP+ L RAHGSA +++G+T+ +A
Sbjct: 313 EGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIA 353
>gi|407795694|ref|ZP_11142652.1| polynucleotide phosphorylase/polyadenylase [Salimicrobium sp. MJ3]
gi|407020035|gb|EKE32749.1| polynucleotide phosphorylase/polyadenylase [Salimicrobium sp. MJ3]
Length = 710
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+P ++RPL +L R HGS +++G T+ L+
Sbjct: 316 RPDGRSPREIRPLTSRVDVLPRTHGSGMFTRGQTQALS 353
>gi|373454293|ref|ZP_09546165.1| polyribonucleotide nucleotidyltransferase [Dialister
succinatiphilus YIT 11850]
gi|371936026|gb|EHO63763.1| polyribonucleotide nucleotidyltransferase [Dialister
succinatiphilus YIT 11850]
Length = 696
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR ++RP+ C +L R HGSA +++G T+ L+ P
Sbjct: 312 RPDGRKLTEIRPITCEVGLLPRVHGSALFTRGQTQALSITTLAP 355
>gi|411008261|ref|ZP_11384590.1| polynucleotide phosphorylase/polyadenylase [Aeromonas aquariorum
AAK1]
gi|423195556|ref|ZP_17182139.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
SSU]
gi|404633331|gb|EKB29880.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
SSU]
Length = 712
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L+ +L RAHGSA +++G+T+ + E+
Sbjct: 314 RIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTER 359
>gi|403069139|ref|ZP_10910471.1| polynucleotide phosphorylase/polyadenylase [Oceanobacillus sp.
Ndiop]
Length = 704
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL+ +L R HGS +++G T+ L+
Sbjct: 314 RPDGRKPDEIRPLSSRIHVLPRTHGSGLFTRGQTQALS 351
>gi|443682349|gb|ELT86988.1| hypothetical protein CAPTEDRAFT_213173 [Capitella teleta]
Length = 108
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R GR PN+LR + C + + GSA QG+TKVLAA
Sbjct: 39 RVHGRKPNELRRIQCRMGVYSQTDGSAYIEQGNTKVLAA 77
>gi|222151113|ref|YP_002560267.1| polynucleotide phosphorylase/polyadenylase [Macrococcus
caseolyticus JCSC5402]
gi|254782726|sp|B9EBG0.1|PNP_MACCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222120236|dbj|BAH17571.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
JCSC5402]
Length = 703
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 315 RPDGRRPDEIRPLDSEVGILPRVHGSGLFTRGQTQALS 352
>gi|340714151|ref|XP_003395595.1| PREDICTED: exosome complex component RRP46-like [Bombus terrestris]
Length = 220
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 13 QLRPLACYCSILHRAHGSASWSQGDTKVLA-------AKNENP--EKVSIEVIWKSKTGQ 63
+LRP+ C + L GSA QG+T V+A AK + +K S+EV + G
Sbjct: 11 RLRPMNCELNQLSMPDGSAMLMQGNTTVVAGIYGPIEAKPQKMIYDKASVEVSYSPIKGP 70
Query: 64 IGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++ EM +K T ++ I+T +P T + +Q
Sbjct: 71 AKVDDRMTEMYIKETCEAAIIVTFHPATAICINVQ 105
>gi|291538574|emb|CBL11685.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
XB6B4]
Length = 719
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR NQ+RPLA ++ R HGSA +++G T++
Sbjct: 334 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQI 369
>gi|257413916|ref|ZP_04744667.2| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
L1-82]
gi|257201810|gb|EEV00095.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
L1-82]
Length = 719
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR NQ+RPLA ++ R HGSA +++G T++
Sbjct: 334 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQI 369
>gi|117618225|ref|YP_857790.1| polynucleotide phosphorylase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|187470961|sp|A0KND9.1|PNP_AERHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117559632|gb|ABK36580.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 712
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L+ +L RAHGSA +++G+T+ + E+
Sbjct: 314 RIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTER 359
>gi|291529163|emb|CBK94749.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale
M104/1]
Length = 696
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR NQ+RPLA ++ R HGSA +++G T++
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQI 347
>gi|291536078|emb|CBL09190.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
M50/1]
Length = 697
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR NQ+RPLA ++ R HGSA +++G T++
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQI 347
>gi|238924296|ref|YP_002937812.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale ATCC
33656]
gi|238875971|gb|ACR75678.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale ATCC
33656]
Length = 718
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR NQ+RPLA ++ R HGSA +++G T++
Sbjct: 334 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQI 369
>gi|121609766|ref|YP_997573.1| polynucleotide phosphorylase/polyadenylase [Verminephrobacter
eiseniae EF01-2]
gi|187611331|sp|A1WLP8.1|PNP_VEREI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121554406|gb|ABM58555.1| 3' exoribonuclease [Verminephrobacter eiseniae EF01-2]
Length = 757
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+ +RP+ +L RAHGSA +++G+T+ LA E+
Sbjct: 317 RIDGRDTRTVRPIEIRAGVLPRAHGSALFTRGETQALAVATLGTER 362
>gi|380026087|ref|XP_003696793.1| PREDICTED: exosome complex component RRP46-like [Apis florea]
Length = 223
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLA-------AKNENP--EKVSIEVIWKSKTGQI 64
LRP+ C + L GSA QG+T V+A AK + +K SIEV + G
Sbjct: 15 LRPMNCELNQLSMPDGSAMLMQGNTAVVAGIYGPIEAKPQKMIYDKASIEVSYIPVKGPA 74
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++ EM +K T ++ I+T +P T + IQ
Sbjct: 75 KIDDRMTEMYIKETCEAAIIVTFHPATAICINIQ 108
>gi|357620682|gb|EHJ72793.1| exosome complex exonuclease RRP46 [Danaus plexippus]
Length = 205
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 17 LACYCSILHRAHGSASWSQGDTKVLAAKN---------ENPEKVSIEVIWKSKTGQIGKQ 67
+ C + L R+ GSA SQG+T V + N ++ EK ++E+++ SK G+
Sbjct: 1 MKCELNFLSRSDGSAILSQGETVVTVSVNGPLDIKTTSQSIEKATLEILFSSKGGKPSVA 60
Query: 68 EKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++ E ++++T ++ + + P T ++ IQ
Sbjct: 61 DRFKENVIRQTCETAILGCLYPRTGITITIQ 91
>gi|320333541|ref|YP_004170252.1| polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis
DSM 21211]
gi|319754830|gb|ADV66587.1| Polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis
DSM 21211]
Length = 718
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSI 53
RADGRN +RP+ L R HGSA +++G+T+VL E+ I
Sbjct: 318 RADGRNSRTVRPIWIETHALPRPHGSAIFTRGETQVLGTTTLGTERDEI 366
>gi|291525068|emb|CBK90655.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale DSM
17629]
Length = 696
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR NQ+RPLA ++ R HGSA +++G T++
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQI 347
>gi|225374866|ref|ZP_03752087.1| hypothetical protein ROSEINA2194_00489 [Roseburia inulinivorans DSM
16841]
gi|225213249|gb|EEG95603.1| hypothetical protein ROSEINA2194_00489 [Roseburia inulinivorans DSM
16841]
Length = 697
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR NQ+RPLA ++ R HGSA +++G T++
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQI 347
>gi|443706669|gb|ELU02598.1| hypothetical protein CAPTEDRAFT_197315 [Capitella teleta]
Length = 103
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKV 51
R GR PN+LR + C + + GSA QG+TKVLAA + E V
Sbjct: 39 RVHGRKPNELRRIQCRMGVYSQTDGSAYIEQGNTKVLAAVHGLHEGV 85
>gi|49483437|ref|YP_040661.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MRSA252]
gi|257425328|ref|ZP_05601753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427989|ref|ZP_05604387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430622|ref|ZP_05607004.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 68-397]
gi|257433382|ref|ZP_05609740.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus E1410]
gi|257436224|ref|ZP_05612271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M876]
gi|282903829|ref|ZP_06311717.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C160]
gi|282905592|ref|ZP_06313447.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908567|ref|ZP_06316397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910846|ref|ZP_06318649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914051|ref|ZP_06321838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M899]
gi|282916534|ref|ZP_06324292.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus D139]
gi|282918973|ref|ZP_06326708.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C427]
gi|282924096|ref|ZP_06331772.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C101]
gi|283770338|ref|ZP_06343230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus H19]
gi|283958017|ref|ZP_06375468.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293501083|ref|ZP_06666934.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 58-424]
gi|293526631|ref|ZP_06671316.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M1015]
gi|297591281|ref|ZP_06949919.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MN8]
gi|384867841|ref|YP_005748037.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH60]
gi|415683864|ref|ZP_11449066.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS00]
gi|417887009|ref|ZP_12531148.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21195]
gi|418566693|ref|ZP_13131066.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21264]
gi|418582108|ref|ZP_13146186.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418597659|ref|ZP_13161181.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21342]
gi|418603113|ref|ZP_13166504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21345]
gi|418891907|ref|ZP_13446022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418897812|ref|ZP_13451882.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418900682|ref|ZP_13454739.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418908985|ref|ZP_13462988.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG149]
gi|418917069|ref|ZP_13471028.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418922856|ref|ZP_13476773.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418982187|ref|ZP_13529895.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418985856|ref|ZP_13533542.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1500]
gi|81651256|sp|Q6GHG1.1|PNP_STAAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49241566|emb|CAG40252.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA252]
gi|257271785|gb|EEV03923.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274830|gb|EEV06317.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278750|gb|EEV09369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 68-397]
gi|257281475|gb|EEV11612.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus E1410]
gi|257284506|gb|EEV14626.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M876]
gi|282314068|gb|EFB44460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C101]
gi|282316783|gb|EFB47157.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C427]
gi|282319021|gb|EFB49373.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus D139]
gi|282322119|gb|EFB52443.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M899]
gi|282325451|gb|EFB55760.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327629|gb|EFB57912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330884|gb|EFB60398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595447|gb|EFC00411.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C160]
gi|283460485|gb|EFC07575.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus H19]
gi|283790166|gb|EFC28983.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290920703|gb|EFD97766.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M1015]
gi|291096088|gb|EFE26349.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 58-424]
gi|297576167|gb|EFH94883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MN8]
gi|312438346|gb|ADQ77417.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH60]
gi|315194162|gb|EFU24555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS00]
gi|341858431|gb|EGS99221.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21195]
gi|371969963|gb|EHO87401.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21264]
gi|374393721|gb|EHQ65025.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21342]
gi|374393842|gb|EHQ65145.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21345]
gi|377703150|gb|EHT27466.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377704468|gb|EHT28777.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377705674|gb|EHT29978.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377710518|gb|EHT34756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377731239|gb|EHT55296.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377736179|gb|EHT60209.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377750243|gb|EHT74181.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377754023|gb|EHT77933.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG149]
gi|377760847|gb|EHT84723.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC341D]
Length = 698
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|418430250|ref|ZP_13003166.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387718645|gb|EIK06603.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS3a]
Length = 698
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|359488677|ref|XP_002273777.2| PREDICTED: polyribonucleotide nucleotidyltransferase-like [Vitis
vinifera]
Length = 964
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ N++RPL C L HGS+ +S+GDT+VL
Sbjct: 369 RVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVL 405
>gi|386830809|ref|YP_006237463.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|417797981|ref|ZP_12445167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21310]
gi|418656582|ref|ZP_13218387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-105]
gi|334277103|gb|EGL95342.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21310]
gi|375033233|gb|EHS26437.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-105]
gi|385196201|emb|CCG15822.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus HO 5096 0412]
Length = 698
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|295427761|ref|ZP_06820393.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|295128119|gb|EFG57753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus EMRSA16]
Length = 638
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 259 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 296
>gi|21282886|ref|NP_645974.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MW2]
gi|49486113|ref|YP_043334.1| polynucleotide phosphorylase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253731893|ref|ZP_04866058.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|297208080|ref|ZP_06924511.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300912161|ref|ZP_07129604.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH70]
gi|417653250|ref|ZP_12302984.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21193]
gi|417797215|ref|ZP_12444413.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21305]
gi|417901705|ref|ZP_12545581.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21266]
gi|418312576|ref|ZP_12924085.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21334]
gi|418317160|ref|ZP_12928584.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21340]
gi|418321844|ref|ZP_12933183.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VCU006]
gi|418875210|ref|ZP_13429470.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418934177|ref|ZP_13488000.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418988096|ref|ZP_13535769.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1835]
gi|448741791|ref|ZP_21723748.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
KT/314250]
gi|81649409|sp|Q6G9T9.1|PNP_STAAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81762564|sp|Q8NWY9.1|PNP_STAAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21204325|dbj|BAB95022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MW2]
gi|49244556|emb|CAG42985.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MSSA476]
gi|253724303|gb|EES93032.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|296887323|gb|EFH26225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300886407|gb|EFK81609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH70]
gi|329733632|gb|EGG69960.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21193]
gi|334267263|gb|EGL85727.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21305]
gi|341845544|gb|EGS86746.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21266]
gi|365224459|gb|EHM65724.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VCU006]
gi|365238221|gb|EHM79058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21334]
gi|365239532|gb|EHM80334.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21340]
gi|377719884|gb|EHT44054.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377770270|gb|EHT94032.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC93]
gi|377770920|gb|EHT94679.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC128]
gi|445547429|gb|ELY15698.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
KT/314250]
Length = 698
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|418646120|ref|ZP_13208235.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-55]
gi|421150225|ref|ZP_15609881.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|443639762|ref|ZP_21123763.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21196]
gi|375021586|gb|EHS15082.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-55]
gi|394329615|gb|EJE55717.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|443406413|gb|ELS64993.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21196]
Length = 698
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|418599643|ref|ZP_13163123.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21343]
gi|374396301|gb|EHQ67542.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21343]
Length = 698
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|418559286|ref|ZP_13123832.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21252]
gi|371975577|gb|EHO92871.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21252]
Length = 698
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|417891826|ref|ZP_12535883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21200]
gi|341851112|gb|EGS92041.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21200]
Length = 698
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|384550031|ref|YP_005739283.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JKD6159]
gi|302332880|gb|ADL23073.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JKD6159]
Length = 698
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|384547517|ref|YP_005736770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ED133]
gi|418561375|ref|ZP_13125866.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21262]
gi|298694566|gb|ADI97788.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ED133]
gi|371977586|gb|EHO94850.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21262]
Length = 698
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|296120652|ref|YP_003628430.1| polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus
DSM 3776]
gi|296012992|gb|ADG66231.1| Polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus
DSM 3776]
Length = 703
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR + LR ++C S+L R HGS+ +++G+T+ LA
Sbjct: 315 RLDGRKHDDLRAVSCAASVLPRVHGSSLFTRGETQSLA 352
>gi|296087634|emb|CBI34890.3| unnamed protein product [Vitis vinifera]
Length = 905
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ N++RPL C L HGS+ +S+GDT+VL
Sbjct: 318 RVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVL 354
>gi|387142882|ref|YP_005731275.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TW20]
gi|418281437|ref|ZP_12894248.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21178]
gi|418955487|ref|ZP_13507427.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-189]
gi|269940765|emb|CBI49147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TW20]
gi|365165259|gb|EHM57087.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21178]
gi|375370970|gb|EHS74762.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-189]
Length = 698
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|15924264|ref|NP_371798.1| polynucleotide phosphorylase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926857|ref|NP_374390.1| polynucleotide phosphorylase [Staphylococcus aureus subsp. aureus
N315]
gi|57651844|ref|YP_186150.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus COL]
gi|87160870|ref|YP_493864.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|88194984|ref|YP_499784.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148267764|ref|YP_001246707.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JH9]
gi|150393823|ref|YP_001316498.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JH1]
gi|151221395|ref|YP_001332217.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156979595|ref|YP_001441854.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus Mu3]
gi|161509440|ref|YP_001575099.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|221142508|ref|ZP_03567001.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. JKD6009]
gi|253316410|ref|ZP_04839623.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253733488|ref|ZP_04867653.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus TCH130]
gi|255006061|ref|ZP_05144662.2| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257795670|ref|ZP_05644649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9781]
gi|258416073|ref|ZP_05682341.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A9763]
gi|258421656|ref|ZP_05684580.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9719]
gi|258423885|ref|ZP_05686770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9635]
gi|258434812|ref|ZP_05688886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9299]
gi|258444612|ref|ZP_05692941.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8115]
gi|258447555|ref|ZP_05695699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A6300]
gi|258449397|ref|ZP_05697500.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A6224]
gi|258452573|ref|ZP_05700579.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A5948]
gi|258454776|ref|ZP_05702740.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A5937]
gi|262048163|ref|ZP_06021050.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
D30]
gi|262051336|ref|ZP_06023559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
930918-3]
gi|269202891|ref|YP_003282160.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus ED98]
gi|282892762|ref|ZP_06300997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8117]
gi|282920518|ref|ZP_06328239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9765]
gi|282927616|ref|ZP_06335232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A10102]
gi|284024267|ref|ZP_06378665.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus 132]
gi|294848270|ref|ZP_06789017.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9754]
gi|295406211|ref|ZP_06816018.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8819]
gi|296274832|ref|ZP_06857339.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MR1]
gi|297244439|ref|ZP_06928322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8796]
gi|304381162|ref|ZP_07363815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379014465|ref|YP_005290701.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus VC40]
gi|379020984|ref|YP_005297646.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M013]
gi|384861868|ref|YP_005744588.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|384864501|ref|YP_005749860.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|384869809|ref|YP_005752523.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus T0131]
gi|385781502|ref|YP_005757673.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 11819-97]
gi|386728960|ref|YP_006195343.1| Polynucleotide adenylyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|387150417|ref|YP_005741981.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
04-02981]
gi|387602551|ref|YP_005734072.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ST398]
gi|387780382|ref|YP_005755180.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus LGA251]
gi|404478615|ref|YP_006710045.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
08BA02176]
gi|415686466|ref|ZP_11450555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS01]
gi|415691124|ref|ZP_11453363.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS03]
gi|416839324|ref|ZP_11902718.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O11]
gi|416844709|ref|ZP_11905395.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O46]
gi|417649451|ref|ZP_12299250.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21189]
gi|417651264|ref|ZP_12301027.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21172]
gi|417802653|ref|ZP_12449710.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21318]
gi|417892222|ref|ZP_12536276.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21201]
gi|417896059|ref|ZP_12540026.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21235]
gi|417898433|ref|ZP_12542353.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21259]
gi|417903365|ref|ZP_12547212.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21269]
gi|418283118|ref|ZP_12895875.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21202]
gi|418284628|ref|ZP_12897345.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21209]
gi|418306724|ref|ZP_12918497.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21194]
gi|418309656|ref|ZP_12921207.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21331]
gi|418317764|ref|ZP_12929180.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21232]
gi|418424415|ref|ZP_12997537.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS1]
gi|418427410|ref|ZP_13000422.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS2]
gi|418433216|ref|ZP_13005993.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS4]
gi|418436887|ref|ZP_13008689.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS5]
gi|418439759|ref|ZP_13011466.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS6]
gi|418442811|ref|ZP_13014413.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS7]
gi|418445870|ref|ZP_13017346.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS8]
gi|418448814|ref|ZP_13020206.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451638|ref|ZP_13022972.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454694|ref|ZP_13025956.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457570|ref|ZP_13028773.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418569013|ref|ZP_13133353.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21272]
gi|418570763|ref|ZP_13135024.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21283]
gi|418572334|ref|ZP_13136546.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21333]
gi|418579108|ref|ZP_13143203.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418638080|ref|ZP_13200383.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-3]
gi|418642803|ref|ZP_13204989.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-24]
gi|418654655|ref|ZP_13216551.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-99]
gi|418657913|ref|ZP_13219664.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-111]
gi|418661528|ref|ZP_13223113.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-122]
gi|418873518|ref|ZP_13427813.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-125]
gi|418878123|ref|ZP_13432358.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418880953|ref|ZP_13435172.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418883881|ref|ZP_13438076.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418886536|ref|ZP_13440684.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418889067|ref|ZP_13443203.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418894974|ref|ZP_13449069.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418903487|ref|ZP_13457528.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906210|ref|ZP_13460237.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418911881|ref|ZP_13465864.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG547]
gi|418914372|ref|ZP_13468344.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920353|ref|ZP_13474286.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418925511|ref|ZP_13479413.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418928534|ref|ZP_13482420.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418931345|ref|ZP_13485186.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418980019|ref|ZP_13527807.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus DR10]
gi|418991138|ref|ZP_13538799.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1096]
gi|418993895|ref|ZP_13541531.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG290]
gi|419774387|ref|ZP_14300357.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CO-23]
gi|422742391|ref|ZP_16796397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422745494|ref|ZP_16799433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424768042|ref|ZP_18195335.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CM05]
gi|424785106|ref|ZP_18211909.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
CN79]
gi|440705985|ref|ZP_20886734.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21282]
gi|440734720|ref|ZP_20914332.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|443636828|ref|ZP_21120921.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21236]
gi|448743346|ref|ZP_21725255.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
KT/Y21]
gi|81694630|sp|Q5HGF7.1|PNP_STAAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81705784|sp|Q7A5X7.1|PNP_STAAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81781693|sp|Q99UJ8.1|PNP_STAAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117940100|sp|Q2FHG4.1|PNP_STAA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117940102|sp|Q2FZ20.1|PNP_STAA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611294|sp|A7X1Q8.1|PNP_STAA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611295|sp|A6QGH3.1|PNP_STAAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037316|sp|A6U193.1|PNP_STAA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037317|sp|A5ISF8.1|PNP_STAA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037318|sp|A8Z3V4.1|PNP_STAAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|13701074|dbj|BAB42369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus N315]
gi|14247044|dbj|BAB57436.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Mu50]
gi|57286030|gb|AAW38124.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus COL]
gi|87126844|gb|ABD21358.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|87202542|gb|ABD30352.1| polyribonucleotide nucleotidyltransferase, putative [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|147740833|gb|ABQ49131.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus JH9]
gi|149946275|gb|ABR52211.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus JH1]
gi|150374195|dbj|BAF67455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156721730|dbj|BAF78147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Mu3]
gi|160368249|gb|ABX29220.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253728542|gb|EES97271.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus TCH130]
gi|257789642|gb|EEV27982.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9781]
gi|257839221|gb|EEV63697.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A9763]
gi|257842342|gb|EEV66767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9719]
gi|257845914|gb|EEV69943.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9635]
gi|257849173|gb|EEV73155.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9299]
gi|257850105|gb|EEV74058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8115]
gi|257853746|gb|EEV76705.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A6300]
gi|257857385|gb|EEV80283.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A6224]
gi|257859791|gb|EEV82633.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A5948]
gi|257863159|gb|EEV85923.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A5937]
gi|259160711|gb|EEW45732.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
930918-3]
gi|259163729|gb|EEW48284.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
D30]
gi|262075181|gb|ACY11154.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus ED98]
gi|282590619|gb|EFB95696.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A10102]
gi|282594180|gb|EFB99167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9765]
gi|282764759|gb|EFC04884.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8117]
gi|283470489|emb|CAQ49700.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ST398]
gi|285816956|gb|ADC37443.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
04-02981]
gi|294825070|gb|EFG41492.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9754]
gi|294968799|gb|EFG44821.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8819]
gi|297178469|gb|EFH37715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8796]
gi|302751097|gb|ADL65274.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340145|gb|EFM06086.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312829668|emb|CBX34510.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315131068|gb|EFT87052.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS03]
gi|315198516|gb|EFU28845.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS01]
gi|320140909|gb|EFW32756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144375|gb|EFW36141.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323441055|gb|EGA98762.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O11]
gi|323443924|gb|EGB01535.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O46]
gi|329313944|gb|AEB88357.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus T0131]
gi|329727448|gb|EGG63904.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21172]
gi|329727820|gb|EGG64271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21189]
gi|334274289|gb|EGL92611.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21318]
gi|341840960|gb|EGS82432.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21235]
gi|341848466|gb|EGS89629.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21259]
gi|341849986|gb|EGS91119.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21269]
gi|341858189|gb|EGS98990.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21201]
gi|344177484|emb|CCC87953.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus LGA251]
gi|359830293|gb|AEV78271.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M013]
gi|364522491|gb|AEW65241.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 11819-97]
gi|365168715|gb|EHM60053.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21202]
gi|365173176|gb|EHM63763.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21209]
gi|365237779|gb|EHM78618.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21331]
gi|365245032|gb|EHM85684.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21232]
gi|365246381|gb|EHM86937.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21194]
gi|371978198|gb|EHO95448.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21272]
gi|371982943|gb|EHP00091.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21283]
gi|371984818|gb|EHP01927.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21333]
gi|374363162|gb|AEZ37267.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus VC40]
gi|375014480|gb|EHS08161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-99]
gi|375015916|gb|EHS09560.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-24]
gi|375023304|gb|EHS16767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-3]
gi|375038710|gb|EHS31671.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-122]
gi|375039683|gb|EHS32602.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-111]
gi|375366055|gb|EHS70067.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-125]
gi|377694245|gb|EHT18610.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377694780|gb|EHT19144.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377697135|gb|EHT21490.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377714627|gb|EHT38826.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377714968|gb|EHT39166.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377723260|gb|EHT47385.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377725259|gb|EHT49374.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG547]
gi|377725489|gb|EHT49602.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377731846|gb|EHT55899.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377738446|gb|EHT62455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377742502|gb|EHT66487.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377744580|gb|EHT68557.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377745945|gb|EHT69920.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG290]
gi|377754577|gb|EHT78486.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1524]
gi|377757874|gb|EHT81762.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377765510|gb|EHT89360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|377765712|gb|EHT89561.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC348]
gi|379992182|gb|EIA13639.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus DR10]
gi|383971913|gb|EID87975.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CO-23]
gi|384230253|gb|AFH69500.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 71193]
gi|387718997|gb|EIK06953.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS2]
gi|387720322|gb|EIK08234.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS1]
gi|387725656|gb|EIK13260.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS4]
gi|387727991|gb|EIK15491.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS5]
gi|387730721|gb|EIK18082.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS6]
gi|387735798|gb|EIK22908.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS8]
gi|387737476|gb|EIK24542.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS7]
gi|387738030|gb|EIK25084.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS9]
gi|387744519|gb|EIK31283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS10]
gi|387745809|gb|EIK32559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387747302|gb|EIK34011.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402348679|gb|EJU83658.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CM05]
gi|404440104|gb|AFR73297.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
08BA02176]
gi|408423463|emb|CCJ10874.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408425453|emb|CCJ12840.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408427441|emb|CCJ14804.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408429428|emb|CCJ26593.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408431416|emb|CCJ18731.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408433410|emb|CCJ20695.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408435401|emb|CCJ22661.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408437386|emb|CCJ24629.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|421956516|gb|EKU08845.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
CN79]
gi|436431748|gb|ELP29101.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|436507516|gb|ELP43196.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21282]
gi|443406805|gb|ELS65375.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21236]
gi|445563275|gb|ELY19437.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
KT/Y21]
Length = 698
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL IL R HGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALS 356
>gi|426403537|ref|YP_007022508.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425860205|gb|AFY01241.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 697
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 1 MEIDRA---DGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
M +DRA DGR+ +RP+A IL RAHGS +++G+T+VL
Sbjct: 311 MILDRAVRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLG 355
>gi|116748674|ref|YP_845361.1| polynucleotide phosphorylase/polyadenylase [Syntrophobacter
fumaroxidans MPOB]
gi|187611325|sp|A0LHM4.1|PNP_SYNFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116697738|gb|ABK16926.1| Polyribonucleotide nucleotidyltransferase [Syntrophobacter
fumaroxidans MPOB]
Length = 699
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP+ +L R HGSA +++G+T+VLA
Sbjct: 313 RIDGRRFDEIRPINIQAGVLPRTHGSAVFTRGETQVLA 350
>gi|449494763|ref|XP_004159640.1| PREDICTED: LOW QUALITY PROTEIN: probable polyribonucleotide
nucleotidyltransferase 1, chloroplastic-like [Cucumis
sativus]
Length = 922
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR P ++RP+ +L RAHGS +++G+T+ LA
Sbjct: 445 RSDGRTPVEIRPINSKSGLLPRAHGSTLFTRGETQSLA 482
>gi|449437763|ref|XP_004136660.1| PREDICTED: probable polyribonucleotide nucleotidyltransferase 1,
chloroplastic-like [Cucumis sativus]
Length = 922
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR P ++RP+ +L RAHGS +++G+T+ LA
Sbjct: 445 RSDGRTPVEIRPINSKSGLLPRAHGSTLFTRGETQSLA 482
>gi|433545999|ref|ZP_20502337.1| polyribonucleotide nucleotidyltransferase [Brevibacillus agri
BAB-2500]
gi|432182615|gb|ELK40178.1| polyribonucleotide nucleotidyltransferase [Brevibacillus agri
BAB-2500]
Length = 549
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR N++RPL+ IL R HGSA +++G T+ L+
Sbjct: 152 RPDGRALNEIRPLSSETGILSRTHGSAMFTRGQTQALS 189
>gi|225572738|ref|ZP_03781493.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM
10507]
gi|225039911|gb|EEG50157.1| polyribonucleotide nucleotidyltransferase [Blautia
hydrogenotrophica DSM 10507]
Length = 745
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR N++RPLA I+ R HGSA +++G T++ P
Sbjct: 359 RPDGRAINEIRPLAAEVDIIPRVHGSAMFTRGQTQICTVTTLAP 402
>gi|440904353|gb|ELR54878.1| Exosome complex exonuclease RRP41 [Bos grunniens mutus]
Length = 244
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 19/115 (16%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASSRARALPDRALVN 72
Query: 55 VIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 127
>gi|145220228|ref|YP_001130937.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
phaeovibrioides DSM 265]
gi|189037312|sp|A4SG26.1|PNP_PROVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145206392|gb|ABP37435.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
phaeovibrioides DSM 265]
Length = 732
Score = 41.2 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +Q+RP++ ++ RAHGSA +++G+T+ L A
Sbjct: 332 RLDGRTLDQVRPISIDLGVIPRAHGSALFTRGETQALVA 370
>gi|325955410|ref|YP_004239070.1| polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM
16922]
gi|323438028|gb|ADX68492.1| Polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM
16922]
Length = 721
Score = 41.2 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+P +RP+ IL AHGS+ +++G+T+ LAA
Sbjct: 321 RLDGRDPKTIRPIWTEVDILPGAHGSSVFTRGETQALAA 359
>gi|407002741|gb|EKE19421.1| hypothetical protein ACD_9C00024G0001, partial [uncultured
bacterium]
Length = 627
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR N++R +AC +L R HGSA +++G+T+ L
Sbjct: 245 RPDGRKLNEVRNIACLVGLLPRTHGSAVFTRGETQAL 281
>gi|421496536|ref|ZP_15943764.1| polynucleotide phosphorylase/polyadenylase [Aeromonas media WS]
gi|407184524|gb|EKE58353.1| polynucleotide phosphorylase/polyadenylase [Aeromonas media WS]
Length = 694
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L+ IL RAHGSA +++G+T+ + E+
Sbjct: 293 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTER 338
>gi|423205509|ref|ZP_17192065.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AMC34]
gi|404624050|gb|EKB20895.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AMC34]
Length = 713
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L+ +L RAHGSA +++G+T+ + E+
Sbjct: 314 RIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTER 359
>gi|334705597|ref|ZP_08521463.1| polynucleotide phosphorylase/polyadenylase [Aeromonas caviae Ae398]
Length = 691
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L+ IL RAHGSA +++G+T+ + E+
Sbjct: 293 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTER 338
>gi|331269622|ref|YP_004396114.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
BKT015925]
gi|329126172|gb|AEB76117.1| Polyribonucleotide nucleotidyltransferase [Clostridium botulinum
BKT015925]
Length = 706
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E R DGRN +++RPL+ S+L R HGS +++G T+V++
Sbjct: 309 EKRRPDGRNFDEIRPLSAETSLLPRTHGSGLFTRGLTQVMS 349
>gi|392389743|ref|YP_006426346.1| polyribonucleotide nucleotidyltransferase [Ornithobacterium
rhinotracheale DSM 15997]
gi|390520821|gb|AFL96552.1| polyribonucleotide nucleotidyltransferase [Ornithobacterium
rhinotracheale DSM 15997]
Length = 710
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGRNP ++RP+ C L HGS+ +++G+T+ L+
Sbjct: 321 RLDGRNPKEIRPIWCEVDYLPATHGSSIFTRGETQSLS 358
>gi|418361746|ref|ZP_12962393.1| polynucleotide phosphorylase/polyadenylase [Aeromonas salmonicida
subsp. salmonicida 01-B526]
gi|356686862|gb|EHI51452.1| polynucleotide phosphorylase/polyadenylase [Aeromonas salmonicida
subsp. salmonicida 01-B526]
Length = 692
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L+ IL RAHGSA +++G+T+ + E+
Sbjct: 293 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTER 338
>gi|332526743|ref|ZP_08402845.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
benzoatilyticus JA2]
gi|332111146|gb|EGJ11178.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
benzoatilyticus JA2]
Length = 769
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+ +RP+ S+L R HGSA +++G+T+ L A E+
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTER 362
>gi|224372889|ref|YP_002607261.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola
AmH]
gi|223588442|gb|ACM92178.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola
AmH]
Length = 451
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR +++RP++ ++L RAHGS +++G T+ LA
Sbjct: 342 RADGRKLDEIRPISIETNLLPRAHGSCLFTRGQTQALA 379
>gi|171912768|ref|ZP_02928238.1| polynucleotide phosphorylase/polyadenylase [Verrucomicrobium
spinosum DSM 4136]
Length = 707
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTK 39
RADGR +QLRPL+ ++ R+HGSA +++G+T+
Sbjct: 314 RADGRGIDQLRPLSGETGLIPRSHGSALFARGETQ 348
>gi|145298048|ref|YP_001140889.1| polynucleotide phosphorylase/polyadenylase [Aeromonas salmonicida
subsp. salmonicida A449]
gi|187470962|sp|A4SJR9.1|PNP_AERS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|142850820|gb|ABO89141.1| polyribonucleotide nucleotidyltransferase [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 713
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L+ IL RAHGSA +++G+T+ + E+
Sbjct: 314 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTER 359
>gi|167040276|ref|YP_001663261.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter sp.
X514]
gi|256750798|ref|ZP_05491683.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus CCSD1]
gi|300914360|ref|ZP_07131676.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X561]
gi|307724404|ref|YP_003904155.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X513]
gi|257096713|sp|B0K1D0.1|PNP_THEPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|166854516|gb|ABY92925.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X514]
gi|256750381|gb|EEU63400.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus CCSD1]
gi|300889295|gb|EFK84441.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X561]
gi|307581465|gb|ADN54864.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X513]
Length = 700
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR + +RP+ C +L R HGSA +++G T+VL
Sbjct: 313 RVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVL 349
>gi|347531974|ref|YP_004838737.1| polynucleotide phosphorylase/polyadenylase [Roseburia hominis
A2-183]
gi|345502122|gb|AEN96805.1| polynucleotide phosphorylase/polyadenylase [Roseburia hominis
A2-183]
Length = 697
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR NQ+RPLA ++ R HGSA +++G T++
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQI 347
>gi|326389429|ref|ZP_08210996.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus JW 200]
gi|392940960|ref|ZP_10306604.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
siderophilus SR4]
gi|325994434|gb|EGD52859.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus JW 200]
gi|392292710|gb|EIW01154.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
siderophilus SR4]
Length = 700
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR + +RP+ C +L R HGSA +++G T+VL
Sbjct: 313 RVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVL 349
>gi|167037615|ref|YP_001665193.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116030|ref|YP_004186189.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|257096712|sp|B0K9P4.1|PNP_THEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|166856449|gb|ABY94857.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929121|gb|ADV79806.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 700
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR + +RP+ C +L R HGSA +++G T+VL
Sbjct: 313 RVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVL 349
>gi|42523058|ref|NP_968438.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio
bacteriovorus HD100]
gi|81617621|sp|Q6MMS2.1|PNP_BDEBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|39575263|emb|CAE79431.1| polyribonucleotide nucleotidyltransferase [Bdellovibrio
bacteriovorus HD100]
Length = 697
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 1 MEIDRA---DGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
M +DRA DGR+ +RP+A IL RAHGS +++G+T+VL
Sbjct: 311 MILDRAVRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLG 355
>gi|449103032|ref|ZP_21739779.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
AL-2]
gi|448965834|gb|EMB46495.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
AL-2]
Length = 699
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+ C +L R HGSA +++G+T+ L
Sbjct: 315 RVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLG 352
>gi|449106942|ref|ZP_21743603.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
ASLM]
gi|451968641|ref|ZP_21921870.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
US-Trep]
gi|448963854|gb|EMB44529.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
ASLM]
gi|451702654|gb|EMD57056.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
US-Trep]
Length = 699
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+ C +L R HGSA +++G+T+ L
Sbjct: 315 RVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLG 352
>gi|449130806|ref|ZP_21767025.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
SP37]
gi|448941846|gb|EMB22746.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
SP37]
Length = 699
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+ C +L R HGSA +++G+T+ L
Sbjct: 315 RVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLG 352
>gi|422342873|ref|ZP_16423812.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
F0402]
gi|325473489|gb|EGC76684.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
F0402]
Length = 698
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+ C +L R HGSA +++G+T+ L
Sbjct: 314 RVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLG 351
>gi|169333888|ref|ZP_02861081.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM
17244]
gi|169259453|gb|EDS73419.1| polyribonucleotide nucleotidyltransferase [Anaerofustis
stercorihominis DSM 17244]
Length = 711
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP+ C + RAHGS +++G T+V++
Sbjct: 312 RPDGRKVDEIRPITCEVGKIRRAHGSGLFTRGQTQVMS 349
>gi|451823216|ref|YP_007459490.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776016|gb|AGF47057.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 699
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN +RP++ +L RAHGSA +++G+T+ L
Sbjct: 319 RIDGRNTRTVRPISIRLGVLPRAHGSALFTRGETQAL 355
>gi|449109824|ref|ZP_21746457.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC
33520]
gi|449120551|ref|ZP_21756936.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
H1-T]
gi|449122958|ref|ZP_21759289.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
MYR-T]
gi|449127739|ref|ZP_21764010.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
SP33]
gi|448943573|gb|EMB24461.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
SP33]
gi|448947054|gb|EMB27904.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
MYR-T]
gi|448947946|gb|EMB28789.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
H1-T]
gi|448958277|gb|EMB39010.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC
33520]
Length = 699
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+ C +L R HGSA +++G+T+ L
Sbjct: 315 RVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLG 352
>gi|449118007|ref|ZP_21754422.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
H-22]
gi|449125780|ref|ZP_21762082.1| polyribonucleotide nucleotidyltransferase [Treponema denticola OTK]
gi|448939749|gb|EMB20666.1| polyribonucleotide nucleotidyltransferase [Treponema denticola OTK]
gi|448949898|gb|EMB30722.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
H-22]
Length = 699
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+ C +L R HGSA +++G+T+ L
Sbjct: 315 RVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLG 352
>gi|429218400|ref|YP_007180044.1| polyribonucleotide nucleotidyltransferase [Deinococcus
peraridilitoris DSM 19664]
gi|429129263|gb|AFZ66278.1| polyribonucleotide nucleotidyltransferase [Deinococcus
peraridilitoris DSM 19664]
Length = 723
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSI 53
RADGR+ +RP+ L RAHGSA +++G+T+VL E+ I
Sbjct: 322 RADGRDGRTIRPIWIEAPYLPRAHGSALFTRGETQVLGTTTLGTERDEI 370
>gi|406675898|ref|ZP_11083084.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AMC35]
gi|404626121|gb|EKB22931.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AMC35]
Length = 715
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L+ IL RAHGSA +++G+T+ + E+
Sbjct: 314 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTER 359
>gi|352104781|ref|ZP_08960534.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. HAL1]
gi|350598703|gb|EHA14813.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. HAL1]
Length = 722
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPLA +L +AHGSA +++G+T+ +A
Sbjct: 326 RIDGRDNQTVRPLAIEVGVLPKAHGSAVFTRGETQAIA 363
>gi|330830884|ref|YP_004393836.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
gi|423202713|ref|ZP_17189292.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AER39]
gi|423208471|ref|ZP_17195025.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii
AER397]
gi|328806020|gb|AEB51219.1| Polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
gi|404614909|gb|EKB11888.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AER39]
gi|404618316|gb|EKB15236.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii
AER397]
Length = 715
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L+ IL RAHGSA +++G+T+ + E+
Sbjct: 314 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTER 359
>gi|385854904|ref|YP_005901417.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240355]
gi|325203845|gb|ADY99298.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240355]
Length = 706
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL S+L R HGSA +++G+T+ LA
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALA 353
>gi|160915053|ref|ZP_02077266.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991]
gi|158432852|gb|EDP11141.1| polyribonucleotide nucleotidyltransferase [Eubacterium dolichum DSM
3991]
Length = 735
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA-----AKNEN 47
R DGR +++RPL +L R HGSA +++G+T+VL+ A N+N
Sbjct: 331 RPDGRKIDEIRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLGAMNDN 378
>gi|433468915|ref|ZP_20426344.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
98080]
gi|432205308|gb|ELK61338.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
98080]
Length = 706
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL S+L R HGSA +++G+T+ LA
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALA 353
>gi|15676656|ref|NP_273800.1| polynucleotide phosphorylase [Neisseria meningitidis MC58]
gi|81784821|sp|Q9K062.1|PNP_NEIMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|7225988|gb|AAF41171.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
MC58]
Length = 707
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL S+L R HGSA +++G+T+ LA
Sbjct: 317 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALA 354
>gi|392957566|ref|ZP_10323089.1| polynucleotide phosphorylase/polyadenylase [Bacillus macauensis
ZFHKF-1]
gi|391876529|gb|EIT85126.1| polynucleotide phosphorylase/polyadenylase [Bacillus macauensis
ZFHKF-1]
Length = 705
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA SIL R HGS +++G T+ L+
Sbjct: 314 RPDGRKVDEIRPLASDVSILARTHGSGLFTRGQTQALS 351
>gi|385851577|ref|YP_005898092.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M04-240196]
gi|416213951|ref|ZP_11622644.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240013]
gi|325144204|gb|EGC66511.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240013]
gi|325206400|gb|ADZ01853.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M04-240196]
Length = 706
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL S+L R HGSA +++G+T+ LA
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALA 353
>gi|345017696|ref|YP_004820049.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344033039|gb|AEM78765.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 700
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR + +RP+ C +L R HGSA +++G T+VL
Sbjct: 313 RVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVL 349
>gi|385324486|ref|YP_005878925.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
8013]
gi|261392873|emb|CAX50454.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
8013]
Length = 706
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL S+L R HGSA +++G+T+ LA
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALA 353
>gi|342218776|ref|ZP_08711380.1| polyribonucleotide nucleotidyltransferase [Megasphaera sp. UPII
135-E]
gi|341588904|gb|EGS32276.1| polyribonucleotide nucleotidyltransferase [Megasphaera sp. UPII
135-E]
Length = 715
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR N++RP++C + R HG+ +++G T++L+
Sbjct: 313 RPDGRKVNEVRPVSCEVGLFARTHGTGLFTRGQTQILS 350
>gi|416163009|ref|ZP_11606888.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
N1568]
gi|433473162|ref|ZP_20430526.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97021]
gi|433481711|ref|ZP_20438976.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2006087]
gi|433483697|ref|ZP_20440925.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2002038]
gi|433485896|ref|ZP_20443097.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97014]
gi|325127858|gb|EGC50764.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
N1568]
gi|432210763|gb|ELK66719.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97021]
gi|432217542|gb|ELK73410.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2006087]
gi|432221400|gb|ELK77210.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2002038]
gi|432222942|gb|ELK78724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97014]
Length = 706
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL S+L R HGSA +++G+T+ LA
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALA 353
>gi|268611199|ref|ZP_06144926.1| polynucleotide phosphorylase/polyadenylase [Ruminococcus
flavefaciens FD-1]
Length = 704
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
E R DGR +++RPLA +L R HGS +++G T+VL P
Sbjct: 311 EGKRVDGRGIDEIRPLAAEVGLLPRVHGSGLFTRGQTQVLTIATLGP 357
>gi|289578380|ref|YP_003477007.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
italicus Ab9]
gi|289528093|gb|ADD02445.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
italicus Ab9]
Length = 700
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR + +RP+ C +L R HGSA +++G T+VL
Sbjct: 313 RVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVL 349
>gi|149204437|ref|ZP_01881404.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
gi|149142322|gb|EDM30369.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
Length = 713
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
+R DGR +++RP+ C +L R HGS+ +++G+T+ L
Sbjct: 317 NRIDGRRLDEIRPIVCETGLLPRTHGSSLFTRGETQAL 354
>gi|42526551|ref|NP_971649.1| polynucleotide phosphorylase/polyadenylase [Treponema denticola
ATCC 35405]
gi|449112337|ref|ZP_21748891.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC
33521]
gi|449115444|ref|ZP_21751908.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC
35404]
gi|81412546|sp|Q73NW1.1|PNP_TREDE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|41816744|gb|AAS11530.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC
35405]
gi|448953221|gb|EMB34016.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC
35404]
gi|448955799|gb|EMB36563.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC
33521]
Length = 698
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+ C +L R HGSA +++G+T+ L
Sbjct: 314 RVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLG 351
>gi|410637104|ref|ZP_11347692.1| polyribonucleotide nucleotidyltransferase [Glaciecola lipolytica
E3]
gi|410143483|dbj|GAC14897.1| polyribonucleotide nucleotidyltransferase [Glaciecola lipolytica
E3]
Length = 703
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR P+ +R L IL R HGSA +++G+T+ L A E+
Sbjct: 314 RIDGREPDMIRALHVNTGILPRTHGSALFTRGETQALVAATLGTER 359
>gi|386812420|ref|ZP_10099645.1| polyribonucleotide nucleotidyltransferase [planctomycete KSU-1]
gi|386404690|dbj|GAB62526.1| polyribonucleotide nucleotidyltransferase [planctomycete KSU-1]
Length = 703
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR +RP+ C IL R HGSA +++G+T+ L
Sbjct: 311 ENKRPDGRGVKDIRPITCEIGILPRTHGSALFTRGETQAL 350
>gi|383757408|ref|YP_005436393.1| polyribonucleotide nucleotidyltransferase Pnp [Rubrivivax
gelatinosus IL144]
gi|381378077|dbj|BAL94894.1| polyribonucleotide nucleotidyltransferase Pnp [Rubrivivax
gelatinosus IL144]
Length = 766
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+ +RP+ S+L R HGSA +++G+T+ L A E+
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTER 362
>gi|291562544|emb|CBL41360.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
bacterium SS3/4]
Length = 739
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPLA IL R HGS +++G T++L A
Sbjct: 312 RPDGRRIDEIRPLAAEIDILPRVHGSGMFTRGQTQILNA 350
>gi|384108653|ref|ZP_10009544.1| polyribonucleotide nucleotidyltransferase [Treponema sp. JC4]
gi|383869761|gb|EID85369.1| polyribonucleotide nucleotidyltransferase [Treponema sp. JC4]
Length = 701
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP+ C ++L HGSA +++G+T+ LA
Sbjct: 315 RIDGRKTDEIRPITCEVNVLPTPHGSALFTRGETQSLA 352
>gi|416197416|ref|ZP_11618626.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
CU385]
gi|433487991|ref|ZP_20445159.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13255]
gi|433504716|ref|ZP_20461656.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9506]
gi|433506779|ref|ZP_20463691.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9757]
gi|433509087|ref|ZP_20465960.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
12888]
gi|433511024|ref|ZP_20467856.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
4119]
gi|325140088|gb|EGC62617.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
CU385]
gi|389606162|emb|CCA45075.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha522]
gi|432224457|gb|ELK80222.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13255]
gi|432242231|gb|ELK97755.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9506]
gi|432242568|gb|ELK98086.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9757]
gi|432247901|gb|ELL03336.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
12888]
gi|432248515|gb|ELL03940.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
4119]
Length = 706
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL S+L R HGSA +++G+T+ LA
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALA 353
>gi|291557792|emb|CBL34909.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum
V10Sc8a]
Length = 705
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
E R DGR +++RPLA +L R HGS +++G T+V+ P
Sbjct: 313 EQKRVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGP 359
>gi|20807834|ref|NP_623005.1| polynucleotide phosphorylase [Thermoanaerobacter tengcongensis MB4]
gi|81481549|sp|Q8RA43.1|PNP_THETN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|20516395|gb|AAM24609.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Thermoanaerobacter tengcongensis MB4]
Length = 707
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR + +RP+ C +L R HGSA +++G T+VL
Sbjct: 313 RVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVL 349
>gi|421558651|ref|ZP_16004529.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
92045]
gi|402337394|gb|EJU72642.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
92045]
Length = 706
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL S+L R HGSA +++G+T+ LA
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALA 353
>gi|340354948|ref|ZP_08677644.1| polyribonucleotide nucleotidyltransferase [Sporosarcina
newyorkensis 2681]
gi|339622962|gb|EGQ27473.1| polyribonucleotide nucleotidyltransferase [Sporosarcina
newyorkensis 2681]
Length = 707
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL+ +L RAHGS+ +++G T+VL+
Sbjct: 316 RPDGRALDEIRPLSSETGLLQRAHGSSLFTRGQTQVLS 353
>gi|291530699|emb|CBK96284.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum
70/3]
Length = 705
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
E R DGR +++RPLA +L R HGS +++G T+V+ P
Sbjct: 313 EQKRVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGP 359
>gi|224060110|ref|XP_002300042.1| predicted protein [Populus trichocarpa]
gi|222847300|gb|EEE84847.1| predicted protein [Populus trichocarpa]
Length = 961
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RPL C L HGS+ +S+GDT+VL
Sbjct: 367 RVDGRRLDEVRPLYCEAGYLPNLHGSSLFSRGDTQVL 403
>gi|167750806|ref|ZP_02422933.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702]
gi|167656241|gb|EDS00371.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum DSM
15702]
Length = 705
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
E R DGR +++RPLA +L R HGS +++G T+V+ P
Sbjct: 313 EQKRVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGP 359
>gi|153814912|ref|ZP_01967580.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756]
gi|317500424|ref|ZP_07958648.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331089569|ref|ZP_08338468.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336438884|ref|ZP_08618505.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145847943|gb|EDK24861.1| polyribonucleotide nucleotidyltransferase [Ruminococcus torques
ATCC 27756]
gi|316898179|gb|EFV20226.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330404937|gb|EGG84475.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336017374|gb|EGN47136.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 695
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR +Q+RPLA +L R HGSA +++G T++ P
Sbjct: 312 RPDGRAIDQIRPLAAEVDLLPRVHGSAMFTRGQTQICTVTTLAP 355
>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
gi|386780762|ref|NP_001248033.1| exosome component 4 [Macaca mulatta]
gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 isoform 1 [Pan
troglodytes]
gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex component RRP41 isoform 1 [Nomascus
leucogenys]
gi|397497366|ref|XP_003819483.1| PREDICTED: exosome complex component RRP41 [Pan paniscus]
gi|402912472|ref|XP_003918788.1| PREDICTED: exosome complex component RRP41 [Papio anubis]
gi|410042315|ref|XP_003951415.1| PREDICTED: exosome complex component RRP41 isoform 2 [Pan
troglodytes]
gi|410042317|ref|XP_003951416.1| PREDICTED: exosome complex component RRP41 isoform 3 [Pan
troglodytes]
gi|426360983|ref|XP_004047707.1| PREDICTED: exosome complex component RRP41-like [Gorilla gorilla
gorilla]
gi|426360993|ref|XP_004047712.1| PREDICTED: exosome complex component RRP41 [Gorilla gorilla
gorilla]
gi|441648333|ref|XP_004090877.1| PREDICTED: exosome complex component RRP41 isoform 2 [Nomascus
leucogenys]
gi|14285756|sp|Q9NPD3.3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41; AltName: Full=p12A
gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
gi|380785703|gb|AFE64727.1| exosome complex component RRP41 [Macaca mulatta]
gi|383414799|gb|AFH30613.1| exosome complex component RRP41 [Macaca mulatta]
gi|384943268|gb|AFI35239.1| exosome complex component RRP41 [Macaca mulatta]
gi|410250230|gb|JAA13082.1| exosome component 4 [Pan troglodytes]
gi|410290294|gb|JAA23747.1| exosome component 4 [Pan troglodytes]
gi|410331253|gb|JAA34573.1| exosome component 4 [Pan troglodytes]
Length = 245
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|57095694|ref|XP_539207.1| PREDICTED: exosome complex component RRP41 isoform 1 [Canis lupus
familiaris]
Length = 245
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 249
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 17 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 76
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 77 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 132
>gi|428320306|ref|YP_007118188.1| RNAse PH [Oscillatoria nigro-viridis PCC 7112]
gi|428243986|gb|AFZ09772.1| RNAse PH [Oscillatoria nigro-viridis PCC 7112]
Length = 239
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
M R DGR PNQLRP++ A GS GDT+VL + P
Sbjct: 1 MSFQRPDGRQPNQLRPISFDREFTKFASGSVLAKSGDTQVLCSVTIKP 48
>gi|424780903|ref|ZP_18207770.1| Polyribonucleotide nucleotidyltransferase [Catellicoccus
marimammalium M35/04/3]
gi|422842604|gb|EKU27055.1| Polyribonucleotide nucleotidyltransferase [Catellicoccus
marimammalium M35/04/3]
Length = 702
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR +++RPLA +L RAHGS +++G T+ L+ P
Sbjct: 320 RPDGRKIDEIRPLAAEVDLLPRAHGSGLFTRGQTQALSVTTLAP 363
>gi|297544656|ref|YP_003676958.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842431|gb|ADH60947.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 700
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR + +RP+ C +L R HGSA +++G T+VL
Sbjct: 313 RVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVL 349
>gi|426235362|ref|XP_004011653.1| PREDICTED: exosome complex component RRP41 isoform 1 [Ovis aries]
gi|426235364|ref|XP_004011654.1| PREDICTED: exosome complex component RRP41 isoform 2 [Ovis aries]
Length = 245
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|397905349|ref|ZP_10506206.1| Polyribonucleotide nucleotidyltransferase [Caloramator australicus
RC3]
gi|397161622|emb|CCJ33540.1| Polyribonucleotide nucleotidyltransferase [Caloramator australicus
RC3]
Length = 703
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR+ ++RPL C IL R HGS + +G T+VL
Sbjct: 309 EKRRPDGRSFEEIRPLYCDVGILPRTHGSGLFQRGQTQVL 348
>gi|302342332|ref|YP_003806861.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii
DSM 2075]
gi|301638945|gb|ADK84267.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii
DSM 2075]
Length = 749
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR ++RP+ C +L R HGSA +++G+T+ L
Sbjct: 317 RIDGRTVTEVRPIDCEVGVLPRTHGSALFTRGETQAL 353
>gi|258645480|ref|ZP_05732949.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM
15470]
gi|260402833|gb|EEW96380.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM
15470]
Length = 694
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR +++RP++C +L R HGSA +++G T+ L P
Sbjct: 312 RPDGRALDEIRPISCEVGLLPRVHGSALFTRGQTQALTITTLAP 355
>gi|86606857|ref|YP_475620.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
JA-3-3Ab]
gi|123504388|sp|Q2JQF4.1|PNP_SYNJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|86555399|gb|ABD00357.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
JA-3-3Ab]
Length = 712
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP++C ++ R HGSA +++G T+VL+
Sbjct: 322 RVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLS 359
>gi|419565159|ref|ZP_14102511.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1098]
gi|419575526|ref|ZP_14112213.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1909]
gi|419581821|ref|ZP_14118108.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1957]
gi|419583924|ref|ZP_14120080.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1961]
gi|380540203|gb|EIA64521.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1098]
gi|380553389|gb|EIA76906.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1909]
gi|380558221|gb|EIA81406.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1957]
gi|380561605|gb|EIA84529.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
1961]
Length = 719
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL HGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNTHGSCLFTRGQTQAL 372
>gi|419556091|ref|ZP_14094086.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
84-2]
gi|380535193|gb|EIA59919.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
84-2]
Length = 719
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL HGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNTHGSCLFTRGQTQAL 372
>gi|419535965|ref|ZP_14075453.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
111-3]
gi|419570066|ref|ZP_14107118.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
7--1]
gi|419577203|ref|ZP_14113761.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
59-2]
gi|419587277|ref|ZP_14123219.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
67-8]
gi|419606953|ref|ZP_14141305.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
9860]
gi|380519381|gb|EIA45460.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
111-3]
gi|380548270|gb|EIA72179.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
7--1]
gi|380557758|gb|EIA80958.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
59-2]
gi|380565121|gb|EIA87892.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli
67-8]
gi|380586334|gb|EIB07639.1| polynucleotide phosphorylase/polyadenylase [Campylobacter coli LMG
9860]
Length = 719
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
RADGRN N++RP+A +IL HGS +++G T+ L
Sbjct: 336 RADGRNLNEVRPIAIETNILPNTHGSCLFTRGQTQAL 372
>gi|126136733|ref|XP_001384890.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
46) [Scheffersomyces stipitis CBS 6054]
gi|126092112|gb|ABN66861.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
46) [Scheffersomyces stipitis CBS 6054]
Length = 226
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 22 SILHRAHGSASWSQGDTKVLA---------AKNENPEKVSIEVIWKSKTGQIGKQEKEYE 72
S+L ++ GSA G TKV+A A+ E P + S+E++ + G +EK E
Sbjct: 7 SLLQKSDGSAELLLGSTKVIASVTGPIEPKARQELPNQASLEILIRPAVGLATTREKLLE 66
Query: 73 MILKRTLQSICILTINPNTTTSVIIQVW 100
L+ LQSI + P V++Q
Sbjct: 67 DKLRSLLQSIIVRFKYPRQLIQVVVQFL 94
>gi|86608913|ref|YP_477675.1| polynucleotide phosphorylase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123502399|sp|Q2JLJ5.1|PNP_SYNJB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|86557455|gb|ABD02412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 712
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP++C ++ R HGSA +++G T+VL+
Sbjct: 322 RVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLS 359
>gi|75045923|sp|Q7YRA3.3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
gi|296480766|tpg|DAA22881.1| TPA: exosome complex exonuclease RRP41 [Bos taurus]
Length = 245
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|417397757|gb|JAA45912.1| Putative exosome complex component rrp41 [Desmodus rotundus]
Length = 245
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|323142160|ref|ZP_08076997.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413352|gb|EFY04234.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
succinatutens YIT 12067]
Length = 690
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C +L R HGS+ +++G T++L
Sbjct: 306 RPDGRQLDEVRPVSCEVGLLARPHGSSLFTRGQTQIL 342
>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102, partial [Chlorella
variabilis]
Length = 241
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P +LR L +L A GSA + G+T+VLAA
Sbjct: 9 RLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAA 47
>gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ATCC 13091]
gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ATCC 13091]
Length = 706
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL S+L R HGSA +++G+T+ LA
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALA 353
>gi|251772265|gb|EES52835.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum
ferrodiazotrophum]
Length = 709
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR+ ++RP+ IL R HGSA +++G+T+ L+
Sbjct: 316 RADGRSTTEIRPITIEVGILPRTHGSALFTRGETQSLS 353
>gi|385328094|ref|YP_005882397.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis alpha710]
gi|416178664|ref|ZP_11610692.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M6190]
gi|416192671|ref|ZP_11616777.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ES14902]
gi|433492260|ref|ZP_20449354.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM586]
gi|433494337|ref|ZP_20451407.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM762]
gi|433496521|ref|ZP_20453562.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7089]
gi|433498581|ref|ZP_20455590.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7124]
gi|433502732|ref|ZP_20459697.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM126]
gi|187610328|sp|A1KT19.2|PNP_NEIMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|308388946|gb|ADO31266.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis alpha710]
gi|325132007|gb|EGC54706.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M6190]
gi|325137838|gb|EGC60413.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ES14902]
gi|432229049|gb|ELK84742.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM586]
gi|432231011|gb|ELK86681.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM762]
gi|432234415|gb|ELK90035.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7124]
gi|432235221|gb|ELK90837.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7089]
gi|432240828|gb|ELK96359.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM126]
Length = 706
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL S+L R HGSA +++G+T+ LA
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALA 353
>gi|149177150|ref|ZP_01855757.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM
8797]
gi|148844042|gb|EDL58398.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM
8797]
Length = 711
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+ LR + C L R HGSA +++G+T+ LA
Sbjct: 315 RLDGRAPDVLRDVTCETGALPRVHGSAVFTRGETQSLA 352
>gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
FAM18]
gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis FAM18]
Length = 711
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPL S+L R HGSA +++G+T+ LA
Sbjct: 321 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALA 358
>gi|410987869|ref|XP_004000217.1| PREDICTED: exosome complex component RRP41 [Felis catus]
Length = 245
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|348555838|ref|XP_003463730.1| PREDICTED: exosome complex component RRP41-like [Cavia porcellus]
Length = 245
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRAHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|395860170|ref|XP_003802388.1| PREDICTED: exosome complex component RRP41 [Otolemur garnettii]
Length = 245
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|375082088|ref|ZP_09729158.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
gi|374743301|gb|EHR79669.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
Length = 247
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR +LRP+ +L A GSA G K+LAA + P++ +
Sbjct: 17 RLDGRKKYELRPIKMEVGVLKSADGSAYVEWGKNKILAAVYGPREIHPKHLQKPDRAILR 76
Query: 55 VIWKSKTGQIGKQEK--------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + +++K E +++ L+ IL + P T+ V I+V
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAVILELFPRTSIDVFIEVL 130
>gi|344307537|ref|XP_003422437.1| PREDICTED: exosome complex component RRP41-like [Loxodonta
africana]
Length = 245
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|194215186|ref|XP_001917049.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP41-like [Equus caballus]
Length = 245
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|406664550|ref|ZP_11072325.1| Polyribonucleotide nucleotidyltransferase [Bacillus isronensis
B3W22]
gi|405387398|gb|EKB46822.1| Polyribonucleotide nucleotidyltransferase [Bacillus isronensis
B3W22]
Length = 704
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL+ +L RAHGSA +++G T+ L+
Sbjct: 315 RPDGRKQDEIRPLSSEVDLLPRAHGSALFTRGQTQALS 352
>gi|75126260|sp|Q6KAI0.1|PNP2_ORYSJ RecName: Full=Polyribonucleotide nucleotidyltransferase 2,
mitochondrial; AltName: Full=Polynucleotide
phosphorylase 2; Short=PNPase 2; Flags: Precursor
gi|47847669|dbj|BAD21450.1| putative polyribonucleotide nucleotidyltransferase [Oryza sativa
Japonica Group]
Length = 982
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RPL C S HGSA +S+GDT+VL
Sbjct: 379 RVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVL 415
>gi|421860637|ref|ZP_16292743.1| polyribonucleotide nucleotidyltransferase [Paenibacillus popilliae
ATCC 14706]
gi|410829823|dbj|GAC43180.1| polyribonucleotide nucleotidyltransferase [Paenibacillus popilliae
ATCC 14706]
Length = 734
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP+ C S+L R HGS +++G T+ L+
Sbjct: 313 RPDGRKLDEIRPIECDTSLLPRTHGSGLFTRGQTQALS 350
>gi|393201674|ref|YP_006463516.1| polyribonucleotide nucleotidyltransferase [Solibacillus silvestris
StLB046]
gi|327441005|dbj|BAK17370.1| polyribonucleotide nucleotidyltransferase [Solibacillus silvestris
StLB046]
Length = 704
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL+ +L RAHGSA +++G T+ L+
Sbjct: 315 RPDGRKQDEIRPLSSEVDLLPRAHGSALFTRGQTQALS 352
>gi|254482485|ref|ZP_05095724.1| 3' exoribonuclease family, domain 2, protein [marine gamma
proteobacterium HTCC2148]
gi|214037176|gb|EEB77844.1| 3' exoribonuclease family, domain 2, protein [marine gamma
proteobacterium HTCC2148]
Length = 703
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ +R +AC +L +AHGSA +++G+T+ + A
Sbjct: 314 RIDGRDTRTVRAIACEVDVLAKAHGSALFTRGETQAIGA 352
>gi|225165849|ref|ZP_03727626.1| tRNA nucleotidyltransferase [Diplosphaera colitermitum TAV2]
gi|224799908|gb|EEG18360.1| tRNA nucleotidyltransferase [Diplosphaera colitermitum TAV2]
Length = 254
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPE 49
RADGR P+QLRP+ +I A GS S G+T+V+ A P+
Sbjct: 6 RADGRRPDQLRPITFEANIAPHATGSVLASFGNTRVICAATIEPK 50
>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex component RRP41 [Callithrix jacchus]
Length = 245
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|392953990|ref|ZP_10319542.1| Polyribonucleotide nucleotidyltransferase [Hydrocarboniphaga effusa
AP103]
gi|391857889|gb|EIT68419.1| Polyribonucleotide nucleotidyltransferase [Hydrocarboniphaga effusa
AP103]
Length = 703
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RP++ +L R HGSA +++G+T+VLA
Sbjct: 321 RIDGRDTRTVRPISIDVGVLPRTHGSALFTRGETQVLA 358
>gi|374633082|ref|ZP_09705449.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
gi|373524566|gb|EHP69443.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
Length = 245
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P++LRP+ +L A GS+ G+TK++AA
Sbjct: 16 RLDGRRPDELRPMKIEIGVLKNADGSSLVEVGNTKIIAA 54
>gi|448747669|ref|ZP_21729325.1| Polyribonucleotide nucleotidyltransferase [Halomonas titanicae BH1]
gi|445564781|gb|ELY20897.1| Polyribonucleotide nucleotidyltransferase [Halomonas titanicae BH1]
Length = 724
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RPLA +L +AHGSA +++G+T+ +A
Sbjct: 328 RIDGRDNQTVRPLAIEVGVLPKAHGSAIFTRGETQAIA 365
>gi|220909628|ref|YP_002484939.1| polynucleotide phosphorylase [Cyanothece sp. PCC 7425]
gi|254782716|sp|B8HXN3.1|PNP_CYAP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219866239|gb|ACL46578.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7425]
Length = 715
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 RADGRNPNQLRPLACYCSIL-HRAHGSASWSQGDTKVLAA 43
R DGR +++RP++C +L R HGSA +++G T+VL+A
Sbjct: 323 RVDGRKLDEVRPISCLVGVLPRRVHGSALFNRGLTQVLSA 362
>gi|452910847|ref|ZP_21959524.1| Polyribonucleotide nucleotidyltransferase [Kocuria palustris PEL]
gi|452834019|gb|EME36823.1| Polyribonucleotide nucleotidyltransferase [Kocuria palustris PEL]
Length = 753
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEV 55
R DGR P +R L IL R HGSA + +G+T+++ N K+ ++
Sbjct: 353 RIDGRGPRDIRELTAMVEILPRVHGSAIFQRGETQIMGVTTLNMLKLEQQI 403
>gi|334118631|ref|ZP_08492720.1| Ribonuclease PH [Microcoleus vaginatus FGP-2]
gi|333459638|gb|EGK88251.1| Ribonuclease PH [Microcoleus vaginatus FGP-2]
Length = 241
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
M R DGR PNQLRP++ A GS GDT+VL + P
Sbjct: 1 MSFQRPDGRQPNQLRPISFDRQFTKFASGSVLAKSGDTQVLCSVTIKP 48
>gi|307183198|gb|EFN70107.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
[Camponotus floridanus]
Length = 689
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+P+ LR ++C + + HGSA + +G T+V+
Sbjct: 277 RCDGRSPDGLRDISCQVDLFNPLHGSAVFQRGQTQVM 313
>gi|304404299|ref|ZP_07385961.1| polyribonucleotide nucleotidyltransferase [Paenibacillus
curdlanolyticus YK9]
gi|304347277|gb|EFM13109.1| polyribonucleotide nucleotidyltransferase [Paenibacillus
curdlanolyticus YK9]
Length = 701
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR N++RP+ C ++L R HGS +++G T+ L+
Sbjct: 314 RPDGRGLNEIRPIDCDVALLPRTHGSGLFTRGQTQALS 351
>gi|260893502|ref|YP_003239599.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
gi|260865643|gb|ACX52749.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
Length = 736
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR +RPL+ +L R HGSA +++G T+VL+
Sbjct: 326 RADGRGFKDIRPLSVEVGLLPRTHGSALFTRGQTQVLS 363
>gi|227495155|ref|ZP_03925471.1| polynucleotide phosphorylase/polyadenylase [Actinomyces coleocanis
DSM 15436]
gi|226831607|gb|EEH63990.1| polynucleotide phosphorylase/polyadenylase [Actinomyces coleocanis
DSM 15436]
Length = 782
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ +L R HGSA + +G+T++L N
Sbjct: 340 RIDGRKPTDIRSLSAEVEVLPRVHGSALFQRGETQILGVTTLN 382
>gi|449515386|ref|XP_004164730.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
nucleotidyltransferase 2, mitochondrial-like [Cucumis
sativus]
Length = 955
Score = 40.8 bits (94), Expect = 0.091, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RPL C S L HGS+ +S+GDT+VL
Sbjct: 370 RLDGRRLDEVRPLYCESSYLPILHGSSIFSRGDTQVL 406
>gi|427781741|gb|JAA56322.1| Putative exosome component 4 [Rhipicephalus pulchellus]
Length = 246
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR P + R +AC + +A GSA QG+ KVLAA
Sbjct: 13 RLDGRKPFEQRKIACRLGVFTQADGSAYIEQGNAKVLAA 51
>gi|391328429|ref|XP_003738692.1| PREDICTED: polyribonucleotide nucleotidyltransferase-like,
partial [Metaseiulus occidentalis]
Length = 282
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ IL RAHGSA +++G+T+ L
Sbjct: 32 RIDGRDLETVRPIVSEVGILPRAHGSALFTRGETQAL 68
>gi|339444970|ref|YP_004710974.1| hypothetical protein EGYY_14230 [Eggerthella sp. YY7918]
gi|338904722|dbj|BAK44573.1| hypothetical protein EGYY_14230 [Eggerthella sp. YY7918]
Length = 748
Score = 40.8 bits (94), Expect = 0.091, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
+RADGR P+++RPL L R HGS + +G T+ L+
Sbjct: 317 ERADGRRPDEIRPLYIVPGYLPRVHGSGLFQRGQTQALS 355
>gi|291237650|ref|XP_002738745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 273
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR PN +RP+ C I+ A GSA DTKV A
Sbjct: 37 RHDGRKPNDIRPIFLRCGIISNAKGSAYIETKDTKVTCA 75
>gi|406706888|ref|YP_006757241.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
HIMB5]
gi|406652664|gb|AFS48064.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
HIMB5]
Length = 690
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
+R DGR + +RP++C IL R HGSA +++G+T+ +
Sbjct: 312 NRIDGRGLSDVRPISCEVGILPRTHGSALFTRGETQAI 349
>gi|404496453|ref|YP_006720559.1| polynucleotide phosphorylase/polyadenylase [Geobacter
metallireducens GS-15]
gi|418064821|ref|ZP_12702197.1| polyribonucleotide nucleotidyltransferase [Geobacter
metallireducens RCH3]
gi|123729281|sp|Q39VA1.1|PNP_GEOMG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78194056|gb|ABB31823.1| polyribonucleotide nucleotidyltransferase [Geobacter
metallireducens GS-15]
gi|373563094|gb|EHP89295.1| polyribonucleotide nucleotidyltransferase [Geobacter
metallireducens RCH3]
Length = 697
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
+R DGR+ +RP+ IL R HGSA +++G+T+ L A
Sbjct: 312 ERIDGRDTKTIRPITSEVGILPRVHGSALFTRGETQALVA 351
>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
[Ailuropoda melanoleuca]
Length = 245
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|402833625|ref|ZP_10882238.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. CM52]
gi|402280118|gb|EJU28888.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. CM52]
Length = 689
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C +L R HGS +++G T+VL
Sbjct: 311 RPDGRALDEVRPVSCEVGLLPRTHGSGLFTRGQTQVL 347
>gi|430750263|ref|YP_007213171.1| polyribonucleotide nucleotidyltransferase [Thermobacillus composti
KWC4]
gi|430734228|gb|AGA58173.1| polyribonucleotide nucleotidyltransferase [Thermobacillus composti
KWC4]
Length = 699
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR N++RP+ C +L R HGS +++G T+ L+
Sbjct: 314 RPDGRALNEIRPIECEVGLLPRTHGSGLFTRGQTQALS 351
>gi|260887793|ref|ZP_05899056.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
ATCC 35185]
gi|330838689|ref|YP_004413269.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
ATCC 35185]
gi|260862469|gb|EEX76969.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
ATCC 35185]
gi|329746453|gb|AEB99809.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
ATCC 35185]
Length = 689
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C +L R HGS +++G T+VL
Sbjct: 311 RPDGRALDEVRPVSCEVGLLPRTHGSGLFTRGQTQVL 347
>gi|218191180|gb|EEC73607.1| hypothetical protein OsI_08089 [Oryza sativa Indica Group]
Length = 1030
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RPL C S HGSA +S+GDT+VL
Sbjct: 373 RVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVL 409
>gi|452822821|gb|EME29837.1| exosome complex component RRP41 [Galdieria sulphuraria]
Length = 249
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVSIEVI---- 56
R DGR P ++R + C IL RA GS G+T VLA + + + S +I
Sbjct: 13 RTDGRRPLEIRKVTCRMGILPRADGSCHLEMGNTIVLATVYGPRELSSRQSSCGIIRCEY 72
Query: 57 ----WKSKTGQIGKQEK----EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S + GK+ E +K+T +++ + + P + + IQV
Sbjct: 73 SMASFASTDRRRGKRSDRNSVEMASSIKKTFENVLLTDLFPKSRVDIFIQVL 124
>gi|410465127|ref|ZP_11318491.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|409981755|gb|EKO38280.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 749
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN +RP+ +L R HGSA +++G+TK L
Sbjct: 321 RLDGRNTTTVRPIGIEVGVLPRTHGSALFARGETKAL 357
>gi|383643511|ref|ZP_09955917.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas elodea
ATCC 31461]
Length = 780
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR Q+RP+ L RAHGSA +++G+T+ +A
Sbjct: 316 RIDGRTTTQIRPIEAETHFLPRAHGSALFTRGETQTIA 353
>gi|239907801|ref|YP_002954542.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
magneticus RS-1]
gi|239797667|dbj|BAH76656.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
RS-1]
Length = 751
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN +RP+ +L R HGSA +++G+TK L
Sbjct: 321 RLDGRNTTTVRPIGIEVGVLPRTHGSALFARGETKAL 357
>gi|254516613|ref|ZP_05128672.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR5-3]
gi|219675036|gb|EED31403.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR5-3]
Length = 704
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ +R +AC +L +AHGSA +++G+T+ + A
Sbjct: 314 RIDGRDTRTVRQIACEVDVLAKAHGSALFTRGETQAIGA 352
>gi|410584535|ref|ZP_11321637.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
subterraneus DSM 13965]
gi|410504121|gb|EKP93633.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
subterraneus DSM 13965]
Length = 762
Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR P ++RP+ +L RAHGS + +G T+VL
Sbjct: 324 RPDGRRPAEIRPIHVEVGLLPRAHGSGLFQRGQTQVL 360
>gi|348617851|ref|ZP_08884385.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816795|emb|CCD29035.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 704
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RP++ +L RAHGSA +++G+T+ LA
Sbjct: 322 RIDGRSTRAVRPISIRSGVLPRAHGSALFTRGETQALA 359
>gi|332981620|ref|YP_004463061.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis
50-1 BON]
gi|332699298|gb|AEE96239.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis
50-1 BON]
Length = 708
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C ++ R HGS +++G T+VL
Sbjct: 312 RPDGRKLDEIRPISCEVGLIPRVHGSGLFTRGQTQVL 348
>gi|328853860|gb|EGG02996.1| hypothetical protein MELLADRAFT_109732 [Melampsora larici-populina
98AG31]
Length = 319
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAK---------NENPEKV 51
M R+D R +RPL S L RA GS +++ GD KVL A +E P+
Sbjct: 1 MLFRRSDARTNLDIRPLTISLSTLSRADGSCNFAFGDLKVLGAMTGPAEVKVWDEKPKHA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
++EV + G K +K + I L P + + +Q
Sbjct: 61 TVEVNVLPISSLPGPSSKSSAQSIKSFISPIIYLEQYPRSLIQINLQ 107
>gi|218282268|ref|ZP_03488567.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
gi|218216736|gb|EEC90274.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
Length = 713
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL +L R HGSA +++G+T+VL+
Sbjct: 320 RPDGRQIDEIRPLNSQVDLLPRVHGSALFTRGETQVLS 357
>gi|15241441|ref|NP_196962.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
gi|75336830|sp|Q9S7G6.1|PNP2_ARATH RecName: Full=Polyribonucleotide nucleotidyltransferase 2,
mitochondrial; Short=AtmtPNPase; AltName:
Full=Polynucleotide phosphorylase 2; Short=PNPase 2;
Flags: Precursor
gi|4971998|emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana]
gi|4972000|emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana]
gi|7573307|emb|CAB87625.1| polynucleotide phosphorylase [Arabidopsis thaliana]
gi|332004667|gb|AED92050.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
Length = 991
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +++RP+ C L HGSA +S+GDT+VL
Sbjct: 364 RVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVL 400
>gi|396476681|ref|XP_003840091.1| hypothetical protein LEMA_P108770.1 [Leptosphaeria maculans JN3]
gi|312216662|emb|CBX96612.1| hypothetical protein LEMA_P108770.1 [Leptosphaeria maculans JN3]
Length = 301
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 12 NQLRPLACYCSILH--RAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSK 60
N +R +A ++ H +A GSA+++ ++ A ++E PE+ +IEV +
Sbjct: 35 NTVRMIAPEVTLTHLNQADGSATYTHNGYSIIGAVNGPIEVQRRDEMPEEAAIEVNVRPA 94
Query: 61 TGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G +E+ E +L T+ SI + + P T + +Q+
Sbjct: 95 AGVGSPKERHLETLLHNTIHSIILARLIPRTLVQITLQI 133
>gi|197301798|ref|ZP_03166868.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC
29176]
gi|197299238|gb|EDY33768.1| polyribonucleotide nucleotidyltransferase [Ruminococcus lactaris
ATCC 29176]
Length = 695
Score = 40.8 bits (94), Expect = 0.097, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR +Q+RPLA ++ R HGSA +++G T++ P
Sbjct: 312 RPDGRAIDQIRPLAAEVDLISRVHGSAMFTRGQTQICTVTTLAP 355
>gi|296533820|ref|ZP_06896357.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis
ATCC 49957]
gi|296265856|gb|EFH11944.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis
ATCC 49957]
Length = 735
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RP+ +L RAHGSA +++G+T+ LA
Sbjct: 313 RIDGRDTKTVRPIMAEVGVLPRAHGSALFTRGETQALA 350
>gi|293115582|ref|ZP_05792154.2| polyribonucleotide nucleotidyltransferase [Butyrivibrio crossotus
DSM 2876]
gi|292808925|gb|EFF68130.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio crossotus
DSM 2876]
Length = 705
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR Q+RPLA I+ R HGSA +++G T++
Sbjct: 319 RPDGREITQIRPLAAEVDIIPRVHGSAMFTRGQTQI 354
>gi|237808986|ref|YP_002893426.1| polynucleotide phosphorylase/polyadenylase [Tolumonas auensis DSM
9187]
gi|259534170|sp|C4L8X0.1|PNP_TOLAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|237501247|gb|ACQ93840.1| Polyribonucleotide nucleotidyltransferase [Tolumonas auensis DSM
9187]
Length = 720
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+P +R L+ +L R HGSA +++G+T+ L A
Sbjct: 314 RIDGRDPQMIRALSVGTGVLPRVHGSALFTRGETQALVA 352
>gi|222623250|gb|EEE57382.1| hypothetical protein OsJ_07542 [Oryza sativa Japonica Group]
Length = 941
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RPL C S HGSA +S+GDT+VL
Sbjct: 295 RVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVL 331
>gi|78044607|ref|YP_360578.1| polynucleotide phosphorylase [Carboxydothermus hydrogenoformans
Z-2901]
gi|123575939|sp|Q3ABA6.1|PNP_CARHZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77996722|gb|ABB15621.1| polyribonucleotide nucleotidyltransferase [Carboxydothermus
hydrogenoformans Z-2901]
Length = 731
Score = 40.8 bits (94), Expect = 0.100, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP+ C +L R HGS +++G T+VL+
Sbjct: 326 RIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLS 363
>gi|384251192|gb|EIE24670.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 245
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P +LR L C L +A GSA + G+TKV+A
Sbjct: 10 RLDGRRPKELRALRCQLGPLPQADGSALFEMGNTKVIA 47
>gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
Length = 773
Score = 40.8 bits (94), Expect = 0.100, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ Q+RP+ L RAHGSA +++G+T+ +A
Sbjct: 314 RIDGRSTTQIRPIESEVHFLPRAHGSALFTRGETQTIA 351
>gi|207742728|ref|YP_002259120.1| n terminus of a polyribonucleotide nucleotidyltransferase protein
[Ralstonia solanacearum IPO1609]
gi|206594122|emb|CAQ61049.1| probable n terminus of a polyribonucleotide nucleotidyltransferase
protein [Ralstonia solanacearum IPO1609]
Length = 481
Score = 40.8 bits (94), Expect = 0.100, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 351
>gi|340374405|ref|XP_003385728.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
mitochondrial-like [Amphimedon queenslandica]
Length = 730
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR N LRP+ C + HGS+S+ +G+T++L+
Sbjct: 346 RCDGRGINDLRPIECDVDLFEELHGSSSFVRGETQMLS 383
>gi|358060529|dbj|GAA93934.1| hypothetical protein E5Q_00580 [Mixia osmundae IAM 14324]
Length = 244
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEV 55
R DGR+ + +R L L ++ GSAS+S G VLAA K E ++ ++E+
Sbjct: 3 REDGRSLDAIRSLRISLGQLSKSDGSASFSFGQVSVLAAVRGPQEVSLKRELADRAALEI 62
Query: 56 IWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
G G K ++ L S+ +L +P + + +Q
Sbjct: 63 TVLPVRGLPGPAAKAVASMITPVLVSLLLLHAHPRSLLQLTLQ 105
>gi|359149350|ref|ZP_09182375.1| ribonuclease PH [Streptomyces sp. S4]
Length = 241
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 3 IDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL--AAKNENPEKVSIEVIWKSK 60
+DR DGR P QLRPL S A GS + GDTKVL A+ E + W+
Sbjct: 1 MDRIDGRTPAQLRPLTIERSWSKHAEGSVLVAFGDTKVLCTASFTEGVPR------WRKG 54
Query: 61 TGQIGKQEKEYEMILKRT 78
+G+ G EY M+ + T
Sbjct: 55 SGE-GWVTAEYSMLPRAT 71
>gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta]
Length = 282
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---KNENPEK----VSIEVIW 57
R DGR+ N+ R + I+ +A GSA G+TK++ + E P K V E+
Sbjct: 37 RHDGRSHNEFRNIFLKTGIVSQAKGSAYIEIGNTKIICSVFDPREIPNKTGYCVQGELFC 96
Query: 58 ----------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K K Q +EKEY +IL+R L+ L PN V V
Sbjct: 97 EFKFAPFSHRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATV 148
>gi|326335448|ref|ZP_08201635.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 338 str. F0234]
gi|325692214|gb|EGD34166.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 338 str. F0234]
Length = 725
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGRN Q+RP+ C L HGS+ +++G+T+ LA
Sbjct: 318 RLDGRNTKQIRPIWCEVGYLPSPHGSSIFTRGETQALA 355
>gi|324998720|ref|ZP_08119832.1| polynucleotide phosphorylase/polyadenylase [Pseudonocardia sp. P1]
Length = 759
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR +RPL+ ++ RAHGSA + +G+T++L N
Sbjct: 349 RIDGRGLTDIRPLSAEVEVIPRAHGSALFERGETQILGVTTLN 391
>gi|291453857|ref|ZP_06593247.1| ribonuclease PH [Streptomyces albus J1074]
gi|421739534|ref|ZP_16177840.1| ribonuclease PH [Streptomyces sp. SM8]
gi|291356806|gb|EFE83708.1| ribonuclease PH [Streptomyces albus J1074]
gi|406692067|gb|EKC95782.1| ribonuclease PH [Streptomyces sp. SM8]
Length = 241
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 3 IDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL--AAKNENPEKVSIEVIWKSK 60
+DR DGR P QLRPL S A GS + GDTKVL A+ E + W+
Sbjct: 1 MDRIDGRTPAQLRPLTIERSWSKHAEGSVLVAFGDTKVLCTASFTEGVPR------WRKG 54
Query: 61 TGQIGKQEKEYEMILKRT 78
+G+ G EY M+ + T
Sbjct: 55 SGE-GWVTAEYSMLPRAT 71
>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
gi|29336584|sp|O59223.1|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 249
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR +LRP+ +L A+GSA G K++AA + P++ +
Sbjct: 17 RIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILR 76
Query: 55 VIWKSKTGQIGKQEK--------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + +++K E ++K L+ IL + P T+ V I+V
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVL 130
>gi|429750967|ref|ZP_19283949.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 332 str. F0381]
gi|429163191|gb|EKY05439.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 332 str. F0381]
Length = 736
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN Q+RP+ C L AHGS+ +++G+T+ L
Sbjct: 319 RLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSL 355
>gi|374625735|ref|ZP_09698151.1| polyribonucleotide nucleotidyltransferase [Coprobacillus sp.
8_2_54BFAA]
gi|373915395|gb|EHQ47166.1| polyribonucleotide nucleotidyltransferase [Coprobacillus sp.
8_2_54BFAA]
Length = 714
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL +L R HGSA +++G+T+VL+
Sbjct: 319 RPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLS 356
>gi|167756799|ref|ZP_02428926.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402]
gi|167702974|gb|EDS17553.1| polyribonucleotide nucleotidyltransferase [Clostridium ramosum DSM
1402]
Length = 718
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL +L R HGSA +++G+T+VL+
Sbjct: 319 RPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLS 356
>gi|95932676|gb|ABF57675.1| chloroplast polyribonucleotide phosphorylase [Chlamydomonas
reinhardtii]
Length = 854
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTK 39
RADGR +RP+ C +L R HGSA +++G+T+
Sbjct: 416 RADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQ 450
>gi|295110267|emb|CBL24220.1| polyribonucleotide nucleotidyltransferase [Ruminococcus obeum
A2-162]
Length = 697
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR Q+RPLA I+ R HGSA +++G T++
Sbjct: 312 RPDGRQITQIRPLAAEVDIIPRVHGSAMFTRGQTQI 347
>gi|237734516|ref|ZP_04564997.1| 3' exoribonuclease [Mollicutes bacterium D7]
gi|365832519|ref|ZP_09374052.1| polyribonucleotide nucleotidyltransferase [Coprobacillus sp.
3_3_56FAA]
gi|229382336|gb|EEO32427.1| 3' exoribonuclease [Coprobacillus sp. D7]
gi|365260464|gb|EHM90421.1| polyribonucleotide nucleotidyltransferase [Coprobacillus sp.
3_3_56FAA]
Length = 714
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL +L R HGSA +++G+T+VL+
Sbjct: 319 RPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLS 356
>gi|153812986|ref|ZP_01965654.1| hypothetical protein RUMOBE_03393 [Ruminococcus obeum ATCC 29174]
gi|149830933|gb|EDM86023.1| polyribonucleotide nucleotidyltransferase [Ruminococcus obeum ATCC
29174]
Length = 691
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR Q+RPLA I+ R HGSA +++G T++
Sbjct: 306 RPDGRQITQIRPLAAEVDIIPRVHGSAMFTRGQTQI 341
>gi|357472161|ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
gi|355507420|gb|AES88562.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
Length = 258
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSKTGQI 64
R DGR +Q RP ++ A GSA G+TKV+ + E S + + S TG++
Sbjct: 33 RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDTGRL 90
Query: 65 ----------------GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G KEY +L + L+ IL P TT V V
Sbjct: 91 NCNVSYTTFSTPVRGQGSDHKEYSSMLHKALEGAIILDSFPKTTVDVFALV 141
>gi|319937430|ref|ZP_08011836.1| septum formation protein maf [Coprobacillus sp. 29_1]
gi|319807447|gb|EFW04051.1| septum formation protein maf [Coprobacillus sp. 29_1]
Length = 895
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL +L R HGSA +++G+T+VL+
Sbjct: 319 RPDGRKIDEVRPLNAQIDLLPRVHGSALFTRGETQVLS 356
>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
Length = 241
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN----------PEKVSIE 54
R DGR P LRPL +L+ A GSA G T+V+AA P++ I
Sbjct: 15 RHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDRAVIR 74
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
+ + K ++E E +++ L++ + + P T V I+V
Sbjct: 75 CRYHMAPFSTDERKNPAPSRREIELSKVIREALEATILTHLFPRTIIDVFIEV 127
>gi|403667569|ref|ZP_10932874.1| polynucleotide phosphorylase/polyadenylase [Kurthia sp. JC8E]
Length = 709
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL+ +L RAHGS +++G T+VL+
Sbjct: 319 RPDGRQLDEIRPLSSEVGLLPRAHGSGLFTRGQTQVLS 356
>gi|402838287|ref|ZP_10886796.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
OBRC8]
gi|402273318|gb|EJU22520.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
OBRC8]
Length = 690
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R D R N++RP+ C +L R HGSA +++G T+V++
Sbjct: 312 RPDNRLQNEIRPIWCEVGVLPRTHGSAVFTRGQTQVMS 349
>gi|363894171|ref|ZP_09321261.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
ACC19a]
gi|361962914|gb|EHL16012.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
ACC19a]
Length = 690
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R D R N++RP+ C +L R HGSA +++G T+V++
Sbjct: 312 RPDNRLQNEIRPIWCEVGVLPRTHGSAVFTRGQTQVMS 349
>gi|357150173|ref|XP_003575367.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
nucleotidyltransferase-like [Brachypodium distachyon]
Length = 983
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RPL C S HGSA +S+GDT+VL
Sbjct: 376 RLDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVL 412
>gi|292492790|ref|YP_003528229.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
Nc4]
gi|291581385|gb|ADE15842.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
Nc4]
Length = 711
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
+R DGR+ +RP+ +L RAHGSA +++G+T+ L A E+
Sbjct: 330 ERIDGRDTKSVRPINIMTGLLPRAHGSALFTRGETQSLVATTLGTER 376
>gi|363890902|ref|ZP_09318196.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
CM5]
gi|361962669|gb|EHL15778.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
CM5]
Length = 690
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R D R N++RP+ C +L R HGSA +++G T+V++
Sbjct: 312 RPDNRLQNEIRPIWCEVGVLPRTHGSAVFTRGQTQVMS 349
>gi|210615800|ref|ZP_03290781.1| hypothetical protein CLONEX_02999 [Clostridium nexile DSM 1787]
gi|210150136|gb|EEA81145.1| hypothetical protein CLONEX_02999 [Clostridium nexile DSM 1787]
Length = 696
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR +Q+RPLA I+ R HGSA +++G T++
Sbjct: 312 RPDGRAIDQIRPLAAETDIIPRVHGSAMFTRGQTQI 347
>gi|156743526|ref|YP_001433655.1| polynucleotide phosphorylase [Roseiflexus castenholzii DSM 13941]
gi|257096706|sp|A7NPZ1.1|PNP_ROSCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|156234854|gb|ABU59637.1| Polyribonucleotide nucleotidyltransferase [Roseiflexus castenholzii
DSM 13941]
Length = 746
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
+R DGR P +RP++ ++ R HGS +++G T+VL
Sbjct: 320 ERVDGRGPKDIRPISVEVGLIPRVHGSGLFTRGQTQVL 357
>gi|451818171|ref|YP_007454372.1| polyribonucleotide nucleotidyltransferase Pnp [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784150|gb|AGF55118.1| polyribonucleotide nucleotidyltransferase Pnp [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 701
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR +Q+RPL C IL R HG+ +++G T+V+
Sbjct: 309 EKRRPDGRAFDQVRPLGCEVGILPRTHGTGLFTRGLTQVM 348
>gi|363892679|ref|ZP_09319840.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
CM2]
gi|361963265|gb|EHL16346.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
CM2]
Length = 690
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R D R N++RP+ C +L R HGSA +++G T+V++
Sbjct: 312 RPDNRLQNEIRPIWCEVGVLPRTHGSAVFTRGQTQVMS 349
>gi|333893333|ref|YP_004467208.1| polynucleotide phosphorylase/polyadenylase [Alteromonas sp. SN2]
gi|332993351|gb|AEF03406.1| polynucleotide phosphorylase/polyadenylase [Alteromonas sp. SN2]
Length = 703
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L IL R HGSA +++G+T+ + A E+
Sbjct: 314 RIDGRDPKMIRALDVATGILPRTHGSAVFTRGETQAIVAATLGTER 359
>gi|301620138|ref|XP_002939437.1| PREDICTED: exosome complex exonuclease RRP46 [Xenopus (Silurana)
tropicalis]
Length = 181
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 50 KVSIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K ++EVI + KTG QEK E +++ T +S+ I +++P T+ ++++Q+
Sbjct: 19 KATLEVILRPKTGLPAIQEKNQEQLIRETCESVIIGSLHPRTSITIVLQI 68
>gi|424762607|ref|ZP_18190111.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
TX1337RF]
gi|402424497|gb|EJV56674.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX1337RF]
Length = 736
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 347 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 385
>gi|392575531|gb|EIW68664.1| hypothetical protein TREMEDRAFT_31912 [Tremella mesenterica DSM
1558]
Length = 278
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 13 QLRPLACYCSILHRAHGSASWSQGDTKVLAAKN---------ENPEKVSIEVIWKSKTGQ 63
+ RP++ L RA GSA +S G T LA+ + ENP ++E+I +
Sbjct: 11 EYRPISINLGELDRADGSARFSFGSTSALASSSGPLEVRILKENPTGSTLEIIHRPLDSI 70
Query: 64 IGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ +E L+ SI L +P + +IQ +
Sbjct: 71 PSTSSRSFEQSLQSIFSSILQLDKHPRSMIQSVIQSF 107
>gi|325284098|ref|YP_004256639.1| Polyribonucleotide nucleotidyltransferase [Deinococcus
proteolyticus MRP]
gi|324315907|gb|ADY27022.1| Polyribonucleotide nucleotidyltransferase [Deinococcus
proteolyticus MRP]
Length = 810
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSI 53
RADGR+ +RP+ L RAHGSA +++G+T+VL E+ I
Sbjct: 319 RADGRDTRTVRPIWTEVRPLPRAHGSAIFTRGETQVLGVTTLGTERDEI 367
>gi|297803352|ref|XP_002869560.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
gi|297315396|gb|EFH45819.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 42/110 (38%), Gaps = 16/110 (14%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK-------------- 50
R DGR +Q RP + A GSA G+TKV+ + E
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVFSDVGRLNC 93
Query: 51 -VSIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
VS GQ G KEY +L + L+ + I+ P TT V V
Sbjct: 94 NVSYTTFASPTLGQ-GTDHKEYSSMLHKALEGVIIMETFPKTTVDVFALV 142
>gi|293556873|ref|ZP_06675434.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1039]
gi|291600957|gb|EFF31248.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1039]
Length = 736
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 347 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 385
>gi|227550843|ref|ZP_03980892.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
TX1330]
gi|293379257|ref|ZP_06625403.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
PC4.1]
gi|431036535|ref|ZP_19492305.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1590]
gi|431763098|ref|ZP_19551651.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E3548]
gi|227179941|gb|EEI60913.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
TX1330]
gi|292642053|gb|EFF60217.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
PC4.1]
gi|430563075|gb|ELB02306.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1590]
gi|430622792|gb|ELB59502.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E3548]
Length = 736
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 347 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 385
>gi|69248510|ref|ZP_00604759.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO]
gi|293567824|ref|ZP_06679165.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1071]
gi|294614599|ref|ZP_06694503.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1636]
gi|294618481|ref|ZP_06698045.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1679]
gi|294621222|ref|ZP_06700407.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
U0317]
gi|314938851|ref|ZP_07846122.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133a04]
gi|314943656|ref|ZP_07850410.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133C]
gi|314949091|ref|ZP_07852451.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0082]
gi|314952184|ref|ZP_07855202.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133A]
gi|314994554|ref|ZP_07859820.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133B]
gi|314996553|ref|ZP_07861590.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133a01]
gi|389867343|ref|YP_006374766.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO]
gi|406579277|ref|ZP_11054509.1| polynucleotide phosphorylase/polyadenylase [Enterococcus sp. GMD4E]
gi|406581605|ref|ZP_11056742.1| polynucleotide phosphorylase/polyadenylase [Enterococcus sp. GMD3E]
gi|406590062|ref|ZP_11064465.1| polynucleotide phosphorylase/polyadenylase [Enterococcus sp. GMD1E]
gi|410938055|ref|ZP_11369913.1| polynucleotide phosphorylase/polyadenylase [Enterococcus sp. GMD5E]
gi|415895093|ref|ZP_11550516.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E4453]
gi|424790917|ref|ZP_18217418.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
V689]
gi|424802600|ref|ZP_18228086.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
S447]
gi|424847559|ref|ZP_18272122.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
R501]
gi|424857757|ref|ZP_18281856.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
R499]
gi|424868993|ref|ZP_18292718.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
R497]
gi|424950366|ref|ZP_18365534.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
R496]
gi|424954607|ref|ZP_18369498.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
R494]
gi|424957707|ref|ZP_18372417.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
R446]
gi|424965649|ref|ZP_18379596.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
P1190]
gi|424967320|ref|ZP_18381025.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
P1140]
gi|424970102|ref|ZP_18383638.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
P1139]
gi|424976030|ref|ZP_18389148.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
P1137]
gi|424979280|ref|ZP_18392141.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
P1123]
gi|424981952|ref|ZP_18394642.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV99]
gi|424984700|ref|ZP_18397221.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV69]
gi|424989335|ref|ZP_18401604.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV38]
gi|424992309|ref|ZP_18404383.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV26]
gi|424993904|ref|ZP_18405876.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV168]
gi|424998869|ref|ZP_18410530.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV165]
gi|425000813|ref|ZP_18412359.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV161]
gi|425004302|ref|ZP_18415619.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV102]
gi|425009027|ref|ZP_18420066.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV1]
gi|425012017|ref|ZP_18422868.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E422]
gi|425014916|ref|ZP_18425561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E417]
gi|425019062|ref|ZP_18429450.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
C621]
gi|425022447|ref|ZP_18432628.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
C497]
gi|425030189|ref|ZP_18435392.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
C1904]
gi|425032480|ref|ZP_18437523.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
515]
gi|425036518|ref|ZP_18441261.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
514]
gi|425039562|ref|ZP_18444088.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
513]
gi|425041898|ref|ZP_18446277.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
511]
gi|425044931|ref|ZP_18449057.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
510]
gi|425050683|ref|ZP_18454407.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
509]
gi|425053430|ref|ZP_18456975.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
506]
gi|425061824|ref|ZP_18465025.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
503]
gi|431767971|ref|ZP_19556414.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1321]
gi|447911681|ref|YP_007393093.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium
NRRL B-2354]
gi|68194404|gb|EAN08910.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO]
gi|291589409|gb|EFF21216.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1071]
gi|291592501|gb|EFF24106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1636]
gi|291595238|gb|EFF26567.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1679]
gi|291599218|gb|EFF30250.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
U0317]
gi|313589294|gb|EFR68139.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133a01]
gi|313591076|gb|EFR69921.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133B]
gi|313595716|gb|EFR74561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133A]
gi|313597693|gb|EFR76538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133C]
gi|313641862|gb|EFS06442.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0133a04]
gi|313644507|gb|EFS09087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
TX0082]
gi|364091769|gb|EHM34203.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E4453]
gi|388532592|gb|AFK57784.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO]
gi|402919142|gb|EJX39769.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
R501]
gi|402919495|gb|EJX40090.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
S447]
gi|402920220|gb|EJX40750.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
V689]
gi|402927996|gb|EJX47902.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
R499]
gi|402933353|gb|EJX52799.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
R496]
gi|402936263|gb|EJX55454.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
R497]
gi|402936415|gb|EJX55597.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
R494]
gi|402942872|gb|EJX61423.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
R446]
gi|402943175|gb|EJX61683.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
P1190]
gi|402952079|gb|EJX69938.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
P1137]
gi|402954631|gb|EJX72232.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
P1140]
gi|402958743|gb|EJX76040.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
P1123]
gi|402962151|gb|EJX79120.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV99]
gi|402962553|gb|EJX79477.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
P1139]
gi|402968032|gb|EJX84537.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV69]
gi|402968975|gb|EJX85421.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV38]
gi|402973788|gb|EJX89885.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV26]
gi|402981549|gb|EJX97071.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV168]
gi|402981726|gb|EJX97240.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV165]
gi|402988328|gb|EJY03340.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV161]
gi|402989759|gb|EJY04668.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV102]
gi|402990827|gb|EJY05680.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
ERV1]
gi|402994842|gb|EJY09344.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E422]
gi|402997250|gb|EJY11592.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E417]
gi|402999452|gb|EJY13640.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
C621]
gi|403002680|gb|EJY16627.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
C497]
gi|403004060|gb|EJY17891.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
C1904]
gi|403012802|gb|EJY25979.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
515]
gi|403014366|gb|EJY27377.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
514]
gi|403015508|gb|EJY28398.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
513]
gi|403022733|gb|EJY35075.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
509]
gi|403025216|gb|EJY37310.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
511]
gi|403028208|gb|EJY40044.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
510]
gi|403030400|gb|EJY42085.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
506]
gi|403040432|gb|EJY51512.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
503]
gi|404455582|gb|EKA02426.1| polynucleotide phosphorylase/polyadenylase [Enterococcus sp. GMD4E]
gi|404459371|gb|EKA05737.1| polynucleotide phosphorylase/polyadenylase [Enterococcus sp. GMD3E]
gi|404469899|gb|EKA14600.1| polynucleotide phosphorylase/polyadenylase [Enterococcus sp. GMD1E]
gi|410733694|gb|EKQ75617.1| polynucleotide phosphorylase/polyadenylase [Enterococcus sp. GMD5E]
gi|430630059|gb|ELB66436.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1321]
gi|445187390|gb|AGE29032.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium
NRRL B-2354]
Length = 736
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 347 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 385
>gi|452820309|gb|EME27353.1| polyribonucleotide nucleotidyltransferase [Galdieria sulphuraria]
Length = 781
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 3 IDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEV 55
+ R DGR +++RPL +L HGS+++ +GDT+V+ P + ++++
Sbjct: 370 VRRCDGRYSDEIRPLRAQVEVLPVVHGSSTFERGDTQVVGVTTIGPTERALKM 422
>gi|72162764|ref|YP_290421.1| ribonuclease PH [Thermobifida fusca YX]
gi|71916496|gb|AAZ56398.1| RNAse PH [Thermobifida fusca YX]
Length = 239
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSKTGQI 64
R DGR PNQLRP+ + L A GSA G+T+VL A E V W+ TG+
Sbjct: 3 RPDGRTPNQLRPVRITRNWLRHAEGSALIEFGETRVLCAATVE-EGVP---RWRRGTGE- 57
Query: 65 GKQEKEYEMILKRT 78
G EY M+ + T
Sbjct: 58 GWVTAEYAMLPRAT 71
>gi|344171819|emb|CCA84441.1| polyribonucleotide nucleotidyltransferase [Ralstonia syzygii R24]
Length = 722
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 351
>gi|431757821|ref|ZP_19546450.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E3083]
gi|430618326|gb|ELB55173.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E3083]
Length = 736
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 347 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 385
>gi|431441094|ref|ZP_19513309.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1630]
gi|430586450|gb|ELB24702.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1630]
Length = 734
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 345 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 383
>gi|430836477|ref|ZP_19454456.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0680]
gi|430488277|gb|ELA64959.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0680]
Length = 736
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 347 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 385
>gi|425058590|ref|ZP_18461968.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
504]
gi|403038111|gb|EJY49348.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
504]
Length = 736
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 347 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 385
>gi|425055101|ref|ZP_18458591.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
505]
gi|403034554|gb|EJY45992.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
505]
Length = 736
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 347 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 385
>gi|424962383|ref|ZP_18376739.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
P1986]
gi|402940893|gb|EJX59674.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
P1986]
Length = 736
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 347 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 385
>gi|293573060|ref|ZP_06684001.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E980]
gi|291606879|gb|EFF36260.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E980]
Length = 736
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 347 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 385
>gi|406994456|gb|EKE13442.1| hypothetical protein ACD_13C00015G0007 [uncultured bacterium]
Length = 787
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 15/72 (20%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSKTGQI 64
R DGR +LR L IL R HGSA +S+G T+VL S+ + GQ+
Sbjct: 312 RPDGRKLTELRKLTGEVGILPRTHGSALFSRGQTQVL----------SVATLGSESMGQL 361
Query: 65 -----GKQEKEY 71
G++EK Y
Sbjct: 362 LESAEGEEEKHY 373
>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
Length = 252
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVS 52
R DGR PN+LR + + +A GSA QG+TK+LA P +VS
Sbjct: 15 RIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVY-GPHEVS 61
>gi|289742861|gb|ADD20178.1| exosomal 3'-5' exoribonuclease complex subunit Rrp46 [Glossina
morsitans morsitans]
Length = 245
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 7 DGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIW 57
D +LR L C + L R GS + QG T VLA+ +N +K ++ I+
Sbjct: 13 DAVKNTKLRTLNCELNPLTRTDGSTLFIQGATCVLASMLGPVEVKLQNLKIDKAHVDCIY 72
Query: 58 KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98
+ K G ++K E ++K T ++ + ++P T S+ +Q
Sbjct: 73 RPKAGLPTIRDKIRETMIKDTCEAALLSALHPRTLISIQLQ 113
>gi|407683714|ref|YP_006798888.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'English Channel 673']
gi|407245325|gb|AFT74511.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'English Channel 673']
Length = 724
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L IL R HGSA +++G+T+ L A E+
Sbjct: 335 RIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALVAATLGTER 380
>gi|403383290|ref|ZP_10925347.1| polynucleotide phosphorylase/polyadenylase [Kurthia sp. JC30]
Length = 706
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL+ +L RAHGS +++G T+VL+
Sbjct: 319 RPDGRKLDEIRPLSSETGLLPRAHGSGLFTRGQTQVLS 356
>gi|356542629|ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 254
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK----------- 50
++ R DGR+ +Q RP ++ A GSA G+TKV+ + E
Sbjct: 29 DLARPDGRSFHQCRPAFFRTGAVNAASGSAYAEVGNTKVIVSVFGPRESKKAMMYSDIGR 88
Query: 51 ----VSIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
VS GQ G KEY +L + L+ IL P TT V V
Sbjct: 89 LNCNVSFTTFATPIRGQ-GSDHKEYSSMLHKALEGAIILETFPKTTVDVFALVL 141
>gi|300691020|ref|YP_003752015.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
PSI07]
gi|299078080|emb|CBJ50723.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
PSI07]
gi|344169630|emb|CCA81989.1| polyribonucleotide nucleotidyltransferase [blood disease bacterium
R229]
Length = 722
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 351
>gi|451995370|gb|EMD87838.1| hypothetical protein COCHEDRAFT_1159049 [Cochliobolus
heterostrophus C5]
Length = 258
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 24 LHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYEMI 74
L+RA GSA+++ ++ A ++E PE+ +IEV + G +E+ E +
Sbjct: 11 LNRADGSATYTHNGYSIIGAVNGPIEVQRRDELPEEAAIEVNLRPAAGVGSPRERHLETL 70
Query: 75 LKRTLQSICILTINPNTTTSVIIQV 99
+ TL+SI + P T + +QV
Sbjct: 71 VHNTLRSIILTQSIPRTLVQITLQV 95
>gi|406928963|gb|EKD64663.1| hypothetical protein ACD_50C00332G0008, partial [uncultured
bacterium]
Length = 611
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR + +R ++C S+L R HGSA + +GDT+ L
Sbjct: 181 RPDGRGVDDIRAISCQVSLLPRTHGSAIFQRGDTQAL 217
>gi|404396492|ref|ZP_10988286.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_2_56FAA]
gi|348613582|gb|EGY63161.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_2_56FAA]
Length = 724
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 353
>gi|342213951|ref|ZP_08706663.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
taxon 780 str. F0422]
gi|341596347|gb|EGS38956.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
taxon 780 str. F0422]
Length = 689
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP++C + L R HGS +++G T+VL
Sbjct: 310 RPDGRQLDEVRPISCRVNALPRTHGSGLFTRGQTQVL 346
>gi|326803908|ref|YP_004321726.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651013|gb|AEA01196.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae
ACS-120-V-Col10a]
Length = 706
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ +L R HGS +++G T+VL+A
Sbjct: 320 RPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQVLSA 358
>gi|309781847|ref|ZP_07676580.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
gi|308919488|gb|EFP65152.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
Length = 722
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 351
>gi|253573573|ref|ZP_04850916.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251847101|gb|EES75106.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 702
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP+ C S+L R HGS +++G T+ L+
Sbjct: 314 RPDGRKLDEIRPIECDISLLPRTHGSGLFTRGQTQALS 351
>gi|406596711|ref|YP_006747841.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
ATCC 27126]
gi|407687652|ref|YP_006802825.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'Balearic Sea AD45']
gi|406374032|gb|AFS37287.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
ATCC 27126]
gi|407291032|gb|AFT95344.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'Balearic Sea AD45']
Length = 724
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L IL R HGSA +++G+T+ L A E+
Sbjct: 335 RIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALVAATLGTER 380
>gi|241663489|ref|YP_002981849.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
12D]
gi|240865516|gb|ACS63177.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12D]
Length = 724
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 353
>gi|373106279|ref|ZP_09520582.1| polyribonucleotide nucleotidyltransferase [Stomatobaculum longum]
gi|371652654|gb|EHO18062.1| polyribonucleotide nucleotidyltransferase [Stomatobaculum longum]
Length = 704
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR ++RPLA +L R HGSA +++G T++L
Sbjct: 315 RPDGRQITEIRPLAAEIDLLPRVHGSAMFTRGQTQIL 351
>gi|346306474|ref|ZP_08848630.1| polyribonucleotide nucleotidyltransferase [Dorea formicigenerans
4_6_53AFAA]
gi|345897848|gb|EGX67745.1| polyribonucleotide nucleotidyltransferase [Dorea formicigenerans
4_6_53AFAA]
Length = 695
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR +Q+RPLA ++ R HGSA +++G T++
Sbjct: 312 RPDGRQIDQIRPLAAEVDLIPRVHGSAMFTRGQTQI 347
>gi|260558389|ref|ZP_05830585.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
C68]
gi|430820915|ref|ZP_19439535.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0045]
gi|430826334|ref|ZP_19444520.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0164]
gi|430828882|ref|ZP_19446993.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0269]
gi|430892921|ref|ZP_19484542.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1575]
gi|431747131|ref|ZP_19535933.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2134]
gi|431765010|ref|ZP_19553534.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E4215]
gi|260075563|gb|EEW63869.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
C68]
gi|430439052|gb|ELA49435.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0045]
gi|430445214|gb|ELA54988.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0164]
gi|430482544|gb|ELA59659.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0269]
gi|430555387|gb|ELA94925.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1575]
gi|430607239|gb|ELB44566.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2134]
gi|430629493|gb|ELB65893.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E4215]
Length = 708
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|212703635|ref|ZP_03311763.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098]
gi|212672930|gb|EEB33413.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio piger ATCC
29098]
Length = 750
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA + +G+TK L
Sbjct: 323 RIDGRDTKTVRPIQIQTSVLPRAHGSAIFRRGETKSL 359
>gi|406994772|gb|EKE13706.1| hypothetical protein ACD_12C00857G0001, partial [uncultured
bacterium]
Length = 611
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR NQ+R L+ S+L R HGSA + +G T+VL+
Sbjct: 234 RPDGRKLNQVRELSVEVSLLPRTHGSALFQRGSTQVLS 271
>gi|182416017|ref|YP_001821083.1| ribonuclease PH [Opitutus terrae PB90-1]
gi|177843231|gb|ACB77483.1| ribonuclease PH [Opitutus terrae PB90-1]
Length = 260
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIWKSK 60
M R+DGR+P+QLRP+ +I A GS S G T+V+ A P KV +W +
Sbjct: 13 MPSPRSDGRHPDQLRPITFEANIAPYATGSVLVSFGSTRVICAAMIEP-KVP---LWMRQ 68
Query: 61 TGQIGK-QEKEYEMILKRTL 79
G G EY M+ TL
Sbjct: 69 QGVRGGWLTAEYSMLPYSTL 88
>gi|451851819|gb|EMD65117.1| hypothetical protein COCSADRAFT_88333 [Cochliobolus sativus
ND90Pr]
Length = 258
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 24 LHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYEMI 74
L+RA GSA+++ ++ A ++E PE+ +IEV + G +E+ E +
Sbjct: 11 LNRADGSATYTHNGYSIIGAVNGPIEVQRRDELPEEAAIEVNLRPAAGVGSPRERHLETL 70
Query: 75 LKRTLQSICILTINPNTTTSVIIQV 99
+ TL+SI + P T + +QV
Sbjct: 71 VHNTLRSIILTQSIPRTLVQITLQV 95
>gi|429752754|ref|ZP_19285593.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 326 str. F0382]
gi|429175764|gb|EKY17184.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 326 str. F0382]
Length = 744
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN Q+RP+ C L AHGS+ +++G+T+ L
Sbjct: 319 RLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSL 355
>gi|260905182|ref|ZP_05913504.1| polynucleotide phosphorylase/polyadenylase [Brevibacterium linens
BL2]
Length = 740
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR +RPL +++ RAHGSA + +G+T++L N
Sbjct: 338 RIDGRGLKDIRPLTAETNVIPRAHGSAIFERGETQILGVTTLN 380
>gi|407699976|ref|YP_006824763.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'Black Sea 11']
gi|407249123|gb|AFT78308.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'Black Sea 11']
Length = 724
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L IL R HGSA +++G+T+ L A E+
Sbjct: 335 RIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALVAATLGTER 380
>gi|326528505|dbj|BAJ93434.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 726
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RPL C S HGSA +S+GDT+VL
Sbjct: 113 RVDGRRLDEVRPLYCESSTYPILHGSALFSRGDTQVL 149
>gi|291546827|emb|CBL19935.1| polyribonucleotide nucleotidyltransferase [Ruminococcus sp. SR1/5]
Length = 697
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR Q+RPLA I+ R HGSA +++G T++ P
Sbjct: 312 RPDGREIRQIRPLAAETDIIPRVHGSAMFTRGQTQICTVTTLAP 355
>gi|224367585|ref|YP_002601748.1| polynucleotide phosphorylase/polyadenylase [Desulfobacterium
autotrophicum HRM2]
gi|257096686|sp|C0QHM6.1|PNP_DESAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|223690301|gb|ACN13584.1| PnpA [Desulfobacterium autotrophicum HRM2]
Length = 695
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKN--ENPEKVSIEVIWKS 59
E R DGR +++R + C +L R HGSA +++G+T+VL P++ IE + +
Sbjct: 310 ENQRIDGRAFDEVREITCEVGVLPRPHGSALFTRGETQVLGVLTLGSGPDEQRIETLNGN 369
Query: 60 KT 61
+T
Sbjct: 370 ET 371
>gi|427730664|ref|YP_007076901.1| polyribonucleotide nucleotidyltransferase [Nostoc sp. PCC 7524]
gi|427366583|gb|AFY49304.1| polyribonucleotide nucleotidyltransferase [Nostoc sp. PCC 7524]
Length = 718
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 RADGRNPNQLRPLACYCSIL-HRAHGSASWSQGDTKVLAA 43
R DGR +++RP++C S+L R HGS +++G T+VL+A
Sbjct: 323 RVDGRKLDEVRPVSCQVSVLPKRVHGSGLFNRGLTQVLSA 362
>gi|406584044|ref|ZP_11059082.1| polynucleotide phosphorylase/polyadenylase [Enterococcus sp. GMD2E]
gi|404464941|gb|EKA10454.1| polynucleotide phosphorylase/polyadenylase [Enterococcus sp. GMD2E]
Length = 723
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 334 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 372
>gi|354491158|ref|XP_003507723.1| PREDICTED: exosome complex component RRP41-like [Cricetulus
griseus]
Length = 245
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|300703637|ref|YP_003745239.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
CFBP2957]
gi|421891456|ref|ZP_16322257.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
K60-1]
gi|299071300|emb|CBJ42618.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
CFBP2957]
gi|378963205|emb|CCF99005.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
K60-1]
Length = 720
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 351
>gi|431081605|ref|ZP_19495695.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1604]
gi|431118203|ref|ZP_19498157.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1613]
gi|430565537|gb|ELB04683.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1604]
gi|430568160|gb|ELB07217.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1613]
Length = 708
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|255658262|ref|ZP_05403671.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
DSM 20544]
gi|260849574|gb|EEX69581.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
DSM 20544]
Length = 689
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR ++RP++C +L R HGS +++G T++L
Sbjct: 311 RPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQIL 347
>gi|150016092|ref|YP_001308346.1| polynucleotide phosphorylase/polyadenylase [Clostridium
beijerinckii NCIMB 8052]
gi|187610256|sp|A6LSR0.1|PNP_CLOB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|149902557|gb|ABR33390.1| Polyribonucleotide nucleotidyltransferase [Clostridium beijerinckii
NCIMB 8052]
Length = 701
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +Q+RPL C IL R HG+ +++G T+V+
Sbjct: 312 RPDGRAFDQIRPLGCEIGILPRTHGTGLFTRGLTQVM 348
>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
Length = 245
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|350423078|ref|XP_003493378.1| PREDICTED: exosome complex component MTR3-like [Bombus impatiens]
Length = 273
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 19/115 (16%)
Query: 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEVIW------ 57
+R+D R N++R + I+ +A GSA G+TKV+ + + P +VS + +
Sbjct: 36 ERSDKRTNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFD-PREVSNKNGYCAQGEI 94
Query: 58 ------------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
K K Q +EK+Y +IL+R L+ L PN V + V
Sbjct: 95 YCEFKFAPFSCQKRKIHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYVMVL 149
>gi|386333034|ref|YP_006029203.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
Po82]
gi|334195482|gb|AEG68667.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
Po82]
Length = 724
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 351
>gi|148655103|ref|YP_001275308.1| polynucleotide phosphorylase/polyadenylase [Roseiflexus sp. RS-1]
gi|187611283|sp|A5URV5.1|PNP_ROSS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148567213|gb|ABQ89358.1| Polyribonucleotide nucleotidyltransferase [Roseiflexus sp. RS-1]
Length = 747
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
+R DGR P +RP++ ++ R HGS +++G T+VL
Sbjct: 320 ERVDGRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVL 357
>gi|83746292|ref|ZP_00943345.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
UW551]
gi|83727042|gb|EAP74167.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
UW551]
Length = 720
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 351
>gi|430847416|ref|ZP_19465253.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1133]
gi|430537036|gb|ELA77389.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1133]
Length = 708
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|430842381|ref|ZP_19460296.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1007]
gi|431740755|ref|ZP_19529666.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2039]
gi|430493462|gb|ELA69765.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1007]
gi|430602838|gb|ELB40388.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2039]
Length = 708
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|50842950|ref|YP_056177.1| polynucleotide phosphorylase [Propionibacterium acnes KPA171202]
gi|289426541|ref|ZP_06428284.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes SK187]
gi|289428637|ref|ZP_06430320.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes J165]
gi|335050619|ref|ZP_08543576.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium sp. 409-HC1]
gi|335054422|ref|ZP_08547237.1| guanosine pentaphosphate ligase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium sp. 434-HC2]
gi|342211443|ref|ZP_08704168.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium sp. CC003-HC2]
gi|354607760|ref|ZP_09025728.1| polyribonucleotide nucleotidyltransferase [Propionibacterium sp.
5_U_42AFAA]
gi|365963171|ref|YP_004944737.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
TypeIA2 P.acn31]
gi|365965412|ref|YP_004946977.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
TypeIA2 P.acn17]
gi|365974348|ref|YP_004955907.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
TypeIA2 P.acn33]
gi|387503851|ref|YP_005945080.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
6609]
gi|407935894|ref|YP_006851536.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
C1]
gi|419421627|ref|ZP_13961855.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
PRP-38]
gi|422385576|ref|ZP_16465708.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL096PA3]
gi|422395404|ref|ZP_16475444.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL097PA1]
gi|422427425|ref|ZP_16504341.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL087PA1]
gi|422430619|ref|ZP_16507499.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL072PA2]
gi|422432608|ref|ZP_16509477.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL059PA2]
gi|422434225|ref|ZP_16511085.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL083PA2]
gi|422438675|ref|ZP_16515513.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL092PA1]
gi|422444282|ref|ZP_16521077.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL002PA1]
gi|422449649|ref|ZP_16526373.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL036PA3]
gi|422451362|ref|ZP_16528065.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL030PA2]
gi|422453516|ref|ZP_16530212.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL087PA3]
gi|422479980|ref|ZP_16556384.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL063PA1]
gi|422481357|ref|ZP_16557757.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL036PA1]
gi|422487428|ref|ZP_16563760.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL013PA2]
gi|422491395|ref|ZP_16567709.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL020PA1]
gi|422491943|ref|ZP_16568253.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL086PA1]
gi|422495184|ref|ZP_16571473.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL025PA1]
gi|422497080|ref|ZP_16573357.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL002PA3]
gi|422499411|ref|ZP_16575675.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL063PA2]
gi|422503280|ref|ZP_16579521.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL027PA2]
gi|422505445|ref|ZP_16581675.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL036PA2]
gi|422506949|ref|ZP_16583167.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL046PA2]
gi|422509977|ref|ZP_16586128.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL059PA1]
gi|422512863|ref|ZP_16588990.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL087PA2]
gi|422516826|ref|ZP_16592934.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL110PA2]
gi|422522678|ref|ZP_16598699.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL053PA2]
gi|422530550|ref|ZP_16606509.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL110PA1]
gi|422533724|ref|ZP_16609655.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL072PA1]
gi|422536731|ref|ZP_16612634.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL078PA1]
gi|422540290|ref|ZP_16616159.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL013PA1]
gi|422542286|ref|ZP_16618138.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL037PA1]
gi|422544470|ref|ZP_16620308.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL082PA1]
gi|422547181|ref|ZP_16623003.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL050PA3]
gi|422548555|ref|ZP_16624367.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL050PA1]
gi|422551150|ref|ZP_16626945.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL005PA3]
gi|422555509|ref|ZP_16631277.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL005PA2]
gi|422557186|ref|ZP_16632931.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL025PA2]
gi|422563878|ref|ZP_16639550.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL046PA1]
gi|422566789|ref|ZP_16642417.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL002PA2]
gi|422571230|ref|ZP_16646823.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL067PA1]
gi|422579475|ref|ZP_16654997.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL005PA4]
gi|81611463|sp|Q6A7P6.1|PNP_PROAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|50840552|gb|AAT83219.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
KPA171202]
gi|289153269|gb|EFD01987.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes SK187]
gi|289158035|gb|EFD06255.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes J165]
gi|313763615|gb|EFS34979.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL013PA1]
gi|313794010|gb|EFS42034.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL110PA1]
gi|313801396|gb|EFS42647.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL110PA2]
gi|313807924|gb|EFS46405.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL087PA2]
gi|313813334|gb|EFS51048.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL025PA1]
gi|313816795|gb|EFS54509.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL059PA1]
gi|313819709|gb|EFS57423.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL046PA2]
gi|313822184|gb|EFS59898.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL036PA1]
gi|313823581|gb|EFS61295.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL036PA2]
gi|313825906|gb|EFS63620.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL063PA1]
gi|313829586|gb|EFS67300.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL063PA2]
gi|313839882|gb|EFS77596.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL086PA1]
gi|314914770|gb|EFS78601.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL005PA4]
gi|314919268|gb|EFS83099.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL050PA1]
gi|314920821|gb|EFS84652.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL050PA3]
gi|314924673|gb|EFS88504.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL036PA3]
gi|314930500|gb|EFS94331.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL067PA1]
gi|314957473|gb|EFT01576.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL002PA1]
gi|314962057|gb|EFT06158.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL002PA2]
gi|314963636|gb|EFT07736.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL082PA1]
gi|314968532|gb|EFT12630.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL037PA1]
gi|314978848|gb|EFT22942.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL072PA2]
gi|314986493|gb|EFT30585.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL005PA2]
gi|314990852|gb|EFT34943.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL005PA3]
gi|315079490|gb|EFT51483.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL053PA2]
gi|315081283|gb|EFT53259.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL078PA1]
gi|315083481|gb|EFT55457.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL027PA2]
gi|315087167|gb|EFT59143.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL002PA3]
gi|315089337|gb|EFT61313.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL072PA1]
gi|315099243|gb|EFT71219.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL059PA2]
gi|315100450|gb|EFT72426.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL046PA1]
gi|315109042|gb|EFT81018.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL030PA2]
gi|327329757|gb|EGE71513.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL096PA3]
gi|327334275|gb|EGE75989.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL097PA1]
gi|327446443|gb|EGE93097.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL013PA2]
gi|327451969|gb|EGE98623.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL092PA1]
gi|327454994|gb|EGF01649.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL087PA3]
gi|327457717|gb|EGF04372.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL083PA2]
gi|328752198|gb|EGF65814.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL020PA1]
gi|328755172|gb|EGF68788.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL087PA1]
gi|328758348|gb|EGF71964.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL025PA2]
gi|333764929|gb|EGL42304.1| guanosine pentaphosphate ligase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium sp. 434-HC2]
gi|333769255|gb|EGL46390.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium sp. 409-HC1]
gi|335277896|gb|AEH29801.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
6609]
gi|340766987|gb|EGR89512.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium sp. CC003-HC2]
gi|353556306|gb|EHC25677.1| polyribonucleotide nucleotidyltransferase [Propionibacterium sp.
5_U_42AFAA]
gi|365739852|gb|AEW84054.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
TypeIA2 P.acn31]
gi|365742093|gb|AEW81787.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
TypeIA2 P.acn17]
gi|365744347|gb|AEW79544.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
TypeIA2 P.acn33]
gi|379978118|gb|EIA11443.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
PRP-38]
gi|407904475|gb|AFU41305.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
C1]
gi|456738607|gb|EMF63174.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
FZ1/2/0]
Length = 733
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ I+ R HGSA + +G+T++L N
Sbjct: 340 RIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLN 382
>gi|374365461|ref|ZP_09623551.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus basilensis
OR16]
gi|373103034|gb|EHP44065.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus basilensis
OR16]
Length = 730
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSAIFTRGETQAL 353
>gi|350567615|ref|ZP_08936023.1| polyribonucleotide nucleotidyltransferase [Propionibacterium avidum
ATCC 25577]
gi|348662378|gb|EGY79041.1| polyribonucleotide nucleotidyltransferase [Propionibacterium avidum
ATCC 25577]
Length = 735
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ I+ R HGSA + +G+T++L N
Sbjct: 340 RIDGRGPRDIRALSAEVGIIPRVHGSALFQRGETQILGVSTLN 382
>gi|417931290|ref|ZP_12574658.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes
SK182B-JCVI]
gi|340776029|gb|EGR98079.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes
SK182B-JCVI]
Length = 735
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ I+ R HGSA + +G+T++L N
Sbjct: 340 RIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLN 382
>gi|332882701|ref|ZP_08450313.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332679501|gb|EGJ52486.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 747
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN Q+RP+ C L AHGS+ +++G+T+ L
Sbjct: 319 RLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSL 355
>gi|422456195|ref|ZP_16532863.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL030PA1]
gi|315106802|gb|EFT78778.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL030PA1]
Length = 733
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ I+ R HGSA + +G+T++L N
Sbjct: 340 RIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLN 382
>gi|422458730|ref|ZP_16535381.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL050PA2]
gi|315104236|gb|EFT76212.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL050PA2]
Length = 733
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ I+ R HGSA + +G+T++L N
Sbjct: 340 RIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLN 382
>gi|422447018|ref|ZP_16523756.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL027PA1]
gi|314954342|gb|EFS98748.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL027PA1]
Length = 733
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ I+ R HGSA + +G+T++L N
Sbjct: 340 RIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLN 382
>gi|395203873|ref|ZP_10394916.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium humerusii P08]
gi|422571823|ref|ZP_16647400.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL044PA1]
gi|314929746|gb|EFS93577.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL044PA1]
gi|328907604|gb|EGG27368.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium humerusii P08]
Length = 735
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ I+ R HGSA + +G+T++L N
Sbjct: 340 RIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLN 382
>gi|422439571|ref|ZP_16516392.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL037PA3]
gi|422471823|ref|ZP_16548314.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL037PA2]
gi|313836842|gb|EFS74556.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL037PA2]
gi|314972179|gb|EFT16276.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL037PA3]
Length = 735
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ I+ R HGSA + +G+T++L N
Sbjct: 340 RIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLN 382
>gi|422525721|ref|ZP_16601722.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL083PA1]
gi|313811605|gb|EFS49319.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL083PA1]
Length = 733
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ I+ R HGSA + +G+T++L N
Sbjct: 340 RIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLN 382
>gi|291542944|emb|CBL16054.1| polyribonucleotide nucleotidyltransferase [Ruminococcus bromii
L2-63]
Length = 739
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
E R DGR + +RPLA ++ R HGS +++G T+VL P
Sbjct: 317 EQKRVDGRGMDDIRPLASEVGVIPRVHGSGMFTRGQTQVLTIATLGP 363
>gi|282854618|ref|ZP_06263953.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes J139]
gi|386069718|ref|YP_005984614.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
ATCC 11828]
gi|422390102|ref|ZP_16470198.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL103PA1]
gi|422463000|ref|ZP_16539619.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL060PA1]
gi|422467278|ref|ZP_16543832.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL110PA4]
gi|422469356|ref|ZP_16545881.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL110PA3]
gi|422565404|ref|ZP_16641053.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL082PA2]
gi|422575342|ref|ZP_16650883.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL001PA1]
gi|282582200|gb|EFB87582.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes J139]
gi|314923878|gb|EFS87709.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL001PA1]
gi|314966065|gb|EFT10164.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL082PA2]
gi|314981898|gb|EFT25991.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL110PA3]
gi|315090762|gb|EFT62738.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL110PA4]
gi|315095011|gb|EFT66987.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL060PA1]
gi|327328056|gb|EGE69825.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL103PA1]
gi|353454085|gb|AER04604.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
ATCC 11828]
Length = 733
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ I+ R HGSA + +G+T++L N
Sbjct: 340 RIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLN 382
>gi|255725122|ref|XP_002547490.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240135381|gb|EER34935.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 225
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 22 SILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYE 72
SIL A GSA + G TKV+ + + E P + S+E+I + TG +EK E
Sbjct: 11 SILENADGSAELTIGGTKVITSISGPIEPKQRQELPNQSSLEIIVRPATGLPTTREKLIE 70
Query: 73 MILKRTLQSICILTINPNTTTSVIIQ 98
L+ LQS+ I P V++Q
Sbjct: 71 DKLRSVLQSVIISYKYPRQLIQVVVQ 96
>gi|295131021|ref|YP_003581684.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes SK137]
gi|417930181|ref|ZP_12573560.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes SK182]
gi|422387776|ref|ZP_16467887.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL096PA2]
gi|422393697|ref|ZP_16473747.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL099PA1]
gi|422425566|ref|ZP_16502500.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL043PA1]
gi|422462657|ref|ZP_16539279.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL038PA1]
gi|422473603|ref|ZP_16550077.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL056PA1]
gi|422477306|ref|ZP_16553739.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL007PA1]
gi|422486020|ref|ZP_16562377.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL043PA2]
gi|422517324|ref|ZP_16593424.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL074PA1]
gi|422521202|ref|ZP_16597234.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL045PA1]
gi|422528936|ref|ZP_16604911.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL053PA1]
gi|422560328|ref|ZP_16636018.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL005PA1]
gi|291376503|gb|ADE00358.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes SK137]
gi|313773552|gb|EFS39518.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL074PA1]
gi|313831348|gb|EFS69062.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL007PA1]
gi|313834958|gb|EFS72672.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL056PA1]
gi|314974222|gb|EFT18318.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL053PA1]
gi|314976667|gb|EFT20762.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL045PA1]
gi|314984307|gb|EFT28399.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL005PA1]
gi|315095362|gb|EFT67338.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL038PA1]
gi|327328376|gb|EGE70138.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL096PA2]
gi|327444160|gb|EGE90814.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL043PA2]
gi|327444959|gb|EGE91613.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL043PA1]
gi|328760033|gb|EGF73613.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
HL099PA1]
gi|340772308|gb|EGR94812.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Propionibacterium acnes SK182]
Length = 733
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ I+ R HGSA + +G+T++L N
Sbjct: 340 RIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLN 382
>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
thermophila PT]
Length = 245
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR ++LRP+ +L RA GS GD KV+AA
Sbjct: 12 RLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAA 50
>gi|449446674|ref|XP_004141096.1| PREDICTED: polyribonucleotide nucleotidyltransferase 2,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RPL C S L HGS+ +S+GDT+VL
Sbjct: 370 RLDGRRLDEVRPLYCESSYLPILHGSSIFSRGDTQVL 406
>gi|431760178|ref|ZP_19548780.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E3346]
gi|430623987|gb|ELB60638.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E3346]
Length = 706
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 317 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 355
>gi|431752989|ref|ZP_19541668.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2620]
gi|430612950|gb|ELB49974.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2620]
Length = 708
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|431738966|ref|ZP_19527906.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1972]
gi|430596509|gb|ELB34333.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1972]
Length = 708
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|431592232|ref|ZP_19521468.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1861]
gi|430591857|gb|ELB29884.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1861]
Length = 708
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|431506791|ref|ZP_19515617.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1634]
gi|430587178|gb|ELB25411.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1634]
Length = 708
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|431208694|ref|ZP_19500907.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1620]
gi|430570700|gb|ELB09640.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1620]
Length = 708
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|430850803|ref|ZP_19468560.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1185]
gi|430535162|gb|ELA75585.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1185]
Length = 708
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|430834775|ref|ZP_19452777.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0679]
gi|430484844|gb|ELA61791.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0679]
Length = 708
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|257887903|ref|ZP_05667556.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,141,733]
gi|257893296|ref|ZP_05672949.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,408]
gi|257896479|ref|ZP_05676132.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
Com12]
gi|257899445|ref|ZP_05679098.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
Com15]
gi|257823957|gb|EEV50889.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,141,733]
gi|257829675|gb|EEV56282.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,408]
gi|257833044|gb|EEV59465.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
Com12]
gi|257837357|gb|EEV62431.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
Com15]
Length = 708
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|257885733|ref|ZP_05665386.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,501]
gi|430853192|ref|ZP_19470922.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1258]
gi|257821589|gb|EEV48719.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,501]
gi|430541014|gb|ELA81191.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1258]
Length = 708
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|257878824|ref|ZP_05658477.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,230,933]
gi|257881461|ref|ZP_05661114.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,502]
gi|257890683|ref|ZP_05670336.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,410]
gi|261207096|ref|ZP_05921785.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC
6]
gi|289565902|ref|ZP_06446342.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
D344SRF]
gi|293563621|ref|ZP_06678065.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1162]
gi|383327520|ref|YP_005353404.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium
Aus0004]
gi|416133428|ref|ZP_11598129.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E4452]
gi|427397042|ref|ZP_18889668.1| polyribonucleotide nucleotidyltransferase [Enterococcus durans
FB129-CNAB-4]
gi|430823379|ref|ZP_19441950.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0120]
gi|430831923|ref|ZP_19449971.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0333]
gi|430839395|ref|ZP_19457336.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0688]
gi|430843158|ref|ZP_19461059.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1050]
gi|430855645|ref|ZP_19473353.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1392]
gi|430858911|ref|ZP_19476530.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1552]
gi|430861418|ref|ZP_19478925.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1573]
gi|430866411|ref|ZP_19481688.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1574]
gi|430952615|ref|ZP_19486421.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1576]
gi|431000749|ref|ZP_19488230.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1578]
gi|431234154|ref|ZP_19502923.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1622]
gi|431256484|ref|ZP_19504839.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1623]
gi|431303442|ref|ZP_19508289.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1626]
gi|431380411|ref|ZP_19510792.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1627]
gi|431544317|ref|ZP_19518613.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1731]
gi|431725185|ref|ZP_19525394.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1904]
gi|431744073|ref|ZP_19532945.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2071]
gi|431749319|ref|ZP_19538061.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2297]
gi|431755834|ref|ZP_19544478.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2883]
gi|431769525|ref|ZP_19557933.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1644]
gi|431773383|ref|ZP_19561708.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2369]
gi|431776481|ref|ZP_19564742.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2560]
gi|431779601|ref|ZP_19567794.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E4389]
gi|431782593|ref|ZP_19570726.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E6012]
gi|431784420|ref|ZP_19572459.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E6045]
gi|257813052|gb|EEV41810.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,230,933]
gi|257817119|gb|EEV44447.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,502]
gi|257827043|gb|EEV53669.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
1,231,410]
gi|260078724|gb|EEW66426.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC
6]
gi|289162275|gb|EFD10135.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
D344SRF]
gi|291604421|gb|EFF33911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1162]
gi|364092951|gb|EHM35268.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E4452]
gi|378937214|gb|AFC62286.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium
Aus0004]
gi|425722368|gb|EKU85263.1| polyribonucleotide nucleotidyltransferase [Enterococcus durans
FB129-CNAB-4]
gi|430442092|gb|ELA52140.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0120]
gi|430480564|gb|ELA57738.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0333]
gi|430490853|gb|ELA67349.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E0688]
gi|430497907|gb|ELA73924.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1050]
gi|430544757|gb|ELA84779.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1552]
gi|430546700|gb|ELA86643.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1392]
gi|430549883|gb|ELA89693.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1573]
gi|430551639|gb|ELA91390.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1574]
gi|430557214|gb|ELA96682.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1576]
gi|430562408|gb|ELB01640.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1578]
gi|430573180|gb|ELB12010.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1622]
gi|430577586|gb|ELB16173.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1623]
gi|430580083|gb|ELB18563.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1626]
gi|430582279|gb|ELB20706.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1627]
gi|430592429|gb|ELB30444.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1731]
gi|430595832|gb|ELB33710.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1904]
gi|430605701|gb|ELB43083.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2071]
gi|430611747|gb|ELB48823.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2297]
gi|430616385|gb|ELB53304.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2883]
gi|430636630|gb|ELB72694.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2369]
gi|430636839|gb|ELB72893.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E1644]
gi|430640800|gb|ELB76628.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E2560]
gi|430641702|gb|ELB77497.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E4389]
gi|430647230|gb|ELB82678.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E6012]
gi|430649515|gb|ELB84891.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
E6045]
Length = 708
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ S+L R HGS +++G T+ L+A
Sbjct: 319 RPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSA 357
>gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-44]
gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-44]
Length = 717
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKSDEVRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|430805942|ref|ZP_19433057.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus sp. HMR-1]
gi|429501770|gb|ELA00097.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus sp. HMR-1]
Length = 723
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 351
>gi|73540660|ref|YP_295180.1| polynucleotide phosphorylase [Ralstonia eutropha JMP134]
gi|123625489|sp|Q473U7.1|PNP_RALEJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|72118073|gb|AAZ60336.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ralstonia eutropha
JMP134]
Length = 728
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 353
>gi|17546786|ref|NP_520188.1| polynucleotide phosphorylase [Ralstonia solanacearum GMI1000]
gi|81504298|sp|Q8XXP6.1|PNP_RALSO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|17429086|emb|CAD15774.1| probable polyribonucleotide nucleotidyltransferase protein
[Ralstonia solanacearum GMI1000]
Length = 717
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 351
>gi|386024443|ref|YP_005942748.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
266]
gi|332675901|gb|AEE72717.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
266]
Length = 749
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ I+ R HGSA + +G+T++L N
Sbjct: 356 RIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVSTLN 398
>gi|376005483|ref|ZP_09782986.1| polynucleotide phosphorylase/polyadenylase [Arthrospira sp. PCC
8005]
gi|375326197|emb|CCE18739.1| polynucleotide phosphorylase/polyadenylase [Arthrospira sp. PCC
8005]
Length = 720
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 5 RADGRNPNQLRPLACYCSIL-HRAHGSASWSQGDTKVLA 42
R DGRN +Q+RP++C +L R HGS +++G T+VL+
Sbjct: 324 RVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLS 362
>gi|299066328|emb|CBJ37512.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
CMR15]
Length = 717
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 351
>gi|409991222|ref|ZP_11274503.1| polynucleotide phosphorylase/polyadenylase [Arthrospira platensis
str. Paraca]
gi|291569922|dbj|BAI92194.1| polyribonucleotide nucleotidyltransferase [Arthrospira platensis
NIES-39]
gi|409937913|gb|EKN79296.1| polynucleotide phosphorylase/polyadenylase [Arthrospira platensis
str. Paraca]
Length = 720
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 5 RADGRNPNQLRPLACYCSIL-HRAHGSASWSQGDTKVLA 42
R DGRN +Q+RP++C +L R HGS +++G T+VL+
Sbjct: 324 RVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLS 362
>gi|225028434|ref|ZP_03717626.1| hypothetical protein EUBHAL_02708 [Eubacterium hallii DSM 3353]
gi|224954232|gb|EEG35441.1| polyribonucleotide nucleotidyltransferase [Eubacterium hallii DSM
3353]
Length = 696
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR N++RPLA +L R HGS +++G T+++ P
Sbjct: 313 RPDGRAINEIRPLAAEIDLLPRVHGSGMFTRGQTQIMTITTLAP 356
>gi|209525615|ref|ZP_03274153.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima
CS-328]
gi|423065196|ref|ZP_17053986.1| polyribonucleotide nucleotidyltransferase [Arthrospira platensis
C1]
gi|209493948|gb|EDZ94265.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima
CS-328]
gi|406713328|gb|EKD08499.1| polyribonucleotide nucleotidyltransferase [Arthrospira platensis
C1]
Length = 720
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 5 RADGRNPNQLRPLACYCSIL-HRAHGSASWSQGDTKVLA 42
R DGRN +Q+RP++C +L R HGS +++G T+VL+
Sbjct: 324 RVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLS 362
>gi|169350006|ref|ZP_02866944.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552]
gi|169293219|gb|EDS75352.1| polyribonucleotide nucleotidyltransferase [Clostridium spiroforme
DSM 1552]
Length = 710
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL +L R HGSA +++G+T+VL+
Sbjct: 319 RPDGRRLDEIRPLDSQIDLLPRVHGSALFTRGETQVLS 356
>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
gi|29337010|sp|Q9V119.1|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
GE5]
gi|380741368|tpe|CCE70002.1| TPA: exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
Length = 249
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR +LRP+ +L A+GSA G K++AA + P++ +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
Query: 55 VIWKSKTGQIGKQEK--------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + +++K E ++K L+ IL + P T V I+V
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVL 130
>gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
metallidurans CH34]
gi|187611276|sp|Q1LPW7.1|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
metallidurans CH34]
Length = 725
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 353
>gi|33519583|ref|NP_878415.1| polynucleotide phosphorylase [Candidatus Blochmannia floridanus]
gi|81666682|sp|Q7VQM0.1|PNP_BLOFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33517246|emb|CAD83629.1| polynucleotide phosphorylase, member of mRNA degradosome
[Candidatus Blochmannia floridanus]
Length = 697
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P+ +R + IL R HGSA +++GDT+ L E+
Sbjct: 317 RFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVTATLGTER 362
>gi|339325133|ref|YP_004684826.1| polyribonucleotide nucleotidyltransferase [Cupriavidus necator N-1]
gi|338165290|gb|AEI76345.1| polyribonucleotide nucleotidyltransferase Pnp [Cupriavidus necator
N-1]
Length = 723
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 353
>gi|213961824|ref|ZP_03390090.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena
Capno]
gi|213955613|gb|EEB66929.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena
Capno]
Length = 744
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN Q+RP+ C L AHGS+ +++G+T+ L
Sbjct: 319 RLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSL 355
>gi|421897867|ref|ZP_16328234.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
solanacearum MolK2]
gi|206589073|emb|CAQ36035.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
solanacearum MolK2]
Length = 752
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 351
>gi|170077686|ref|YP_001734324.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. PCC
7002]
gi|226704826|sp|B1XJU0.1|PNP_SYNP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169885355|gb|ACA99068.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. PCC
7002]
Length = 714
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 5 RADGRNPNQLRPLACYCSILHRA-HGSASWSQGDTKVLA 42
R DGR +Q+RP++C ++L RA HGS +++G T+VL+
Sbjct: 324 RVDGRKLDQVRPISCRTAVLPRAVHGSGLFNRGLTQVLS 362
>gi|383451529|ref|YP_005358250.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium indicum
GPTSA100-9]
gi|380503151|emb|CCG54193.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium indicum
GPTSA100-9]
Length = 723
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR ++RP+ C L AHGSA +++G+T+ LA
Sbjct: 322 RLDGRKTTEIRPIWCEVDYLPSAHGSAVFTRGETQALA 359
>gi|297811589|ref|XP_002873678.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
lyrata]
gi|297319515|gb|EFH49937.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
lyrata]
Length = 992
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +++RP+ C L HGSA +S+GDT+VL
Sbjct: 364 RVDGRHLDEVRPIYCESHYLPALHGSALFSRGDTQVL 400
>gi|166030867|ref|ZP_02233696.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC
27755]
gi|166029134|gb|EDR47891.1| polyribonucleotide nucleotidyltransferase [Dorea formicigenerans
ATCC 27755]
Length = 707
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR +Q+RPLA ++ R HGSA +++G T++
Sbjct: 324 RPDGRQIDQIRPLAAEVDLIPRVHGSAMFTRGQTQI 359
>gi|363899684|ref|ZP_09326192.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. ACB1]
gi|395208251|ref|ZP_10397492.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. ACB8]
gi|361957982|gb|EHL11285.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. ACB1]
gi|394705832|gb|EJF13356.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. ACB8]
Length = 697
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR N++RPL +L R HGSA + +G T++L
Sbjct: 312 RPDGRAINEIRPLESEVDVLPRVHGSAMFKRGQTQIL 348
>gi|344302854|gb|EGW33128.1| hypothetical protein SPAPADRAFT_136405 [Spathaspora passalidarum
NRRL Y-27907]
Length = 219
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 22 SILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYE 72
S+L + GSA G+TKV+A+ + E P + S+E+I + G +EK E
Sbjct: 8 SVLDNSDGSAELIIGNTKVIASVSGPIEPKQRQELPNQASLEIIIRPAKGLSTTREKLLE 67
Query: 73 MILKRTLQSICILTINPNTTTSVIIQVW 100
L+ LQSI I P S+++Q
Sbjct: 68 DKLRALLQSIIIRYKYPRQLISIVVQFL 95
>gi|256820519|ref|YP_003141798.1| polynucleotide phosphorylase/polyadenylase [Capnocytophaga ochracea
DSM 7271]
gi|256582102|gb|ACU93237.1| Polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
DSM 7271]
Length = 735
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN Q+RP+ C L AHGS+ +++G+T+ L
Sbjct: 319 RLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSL 355
>gi|429754778|ref|ZP_19287469.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 324 str. F0483]
gi|429176440|gb|EKY17820.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 324 str. F0483]
Length = 735
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN Q+RP+ C L AHGS+ +++G+T+ L
Sbjct: 319 RLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSL 355
>gi|429745511|ref|ZP_19278920.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 380 str. F0488]
gi|429168690|gb|EKY10509.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 380 str. F0488]
Length = 735
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN Q+RP+ C L AHGS+ +++G+T+ L
Sbjct: 319 RLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSL 355
>gi|406982603|gb|EKE03900.1| hypothetical protein ACD_20C00134G0027 [uncultured bacterium]
Length = 712
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR +++RP+ +L R HGSA +++G T+ L+
Sbjct: 324 RADGRKYDEIRPITVEVGVLPRTHGSAVFTRGSTQALS 361
>gi|423558630|ref|ZP_17534932.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MC67]
gi|401191898|gb|EJQ98920.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MC67]
Length = 717
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|291302562|ref|YP_003513840.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Stackebrandtia nassauensis DSM
44728]
gi|290571782|gb|ADD44747.1| guanosine pentaphosphate synthetase I/polyribonucleotide
nucleotidyltransferase [Stackebrandtia nassauensis DSM
44728]
Length = 825
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR +RPL+ IL R HGSA + +G+T+++ N
Sbjct: 350 RIDGRGTRDIRPLSAEVKILPRVHGSALFERGETQIMGVTTLN 392
>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
gi|21759405|sp|Q921I9.3|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
Length = 245
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128
>gi|403508207|ref|YP_006639845.1| polyribonucleotide nucleotidyltransferase [Nocardiopsis alba ATCC
BAA-2165]
gi|402801182|gb|AFR08592.1| polyribonucleotide nucleotidyltransferase [Nocardiopsis alba ATCC
BAA-2165]
Length = 768
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +R L+ IL R HGSA + +G+T+++ N
Sbjct: 338 RIDGRGPKDIRQLSAEVGILPRVHGSALFERGETQIMGVTTLN 380
>gi|423470021|ref|ZP_17446765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-2]
gi|402437273|gb|EJV69297.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-2]
Length = 717
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|420150609|ref|ZP_14657766.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 335 str. F0486]
gi|394751701|gb|EJF35446.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 335 str. F0486]
Length = 735
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN Q+RP+ C L AHGS+ +++G+T+ L
Sbjct: 319 RLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSL 355
>gi|395003996|ref|ZP_10388085.1| polyribonucleotide nucleotidyltransferase [Acidovorax sp. CF316]
gi|394318096|gb|EJE54566.1| polyribonucleotide nucleotidyltransferase [Acidovorax sp. CF316]
Length = 751
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+ +RP+ S+L RAHGSA +++G+T+ L E+
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRAHGSALFTRGETQALVVTTLGTER 362
>gi|315223620|ref|ZP_07865474.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
F0287]
gi|420160427|ref|ZP_14667210.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
str. Holt 25]
gi|314946401|gb|EFS98396.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
F0287]
gi|394760621|gb|EJF43135.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
str. Holt 25]
Length = 735
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN Q+RP+ C L AHGS+ +++G+T+ L
Sbjct: 319 RLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSL 355
>gi|311068192|ref|YP_003973115.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
1942]
gi|419823827|ref|ZP_14347361.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
C89]
gi|310868709|gb|ADP32184.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
1942]
gi|388472066|gb|EIM08855.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
C89]
Length = 705
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +Q+RPL+ IL R HGS +++G T+ L+
Sbjct: 316 RPDGRGVDQIRPLSSEVGILSRTHGSGLFTRGQTQALS 353
>gi|153855229|ref|ZP_01996395.1| hypothetical protein DORLON_02409 [Dorea longicatena DSM 13814]
gi|149752228|gb|EDM62159.1| polyribonucleotide nucleotidyltransferase [Dorea longicatena DSM
13814]
Length = 695
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR +Q+RPLA ++ R HGSA +++G T++
Sbjct: 312 RPDGREIDQIRPLAAEVDLIPRVHGSAMFTRGQTQI 347
>gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16]
gi|122947022|sp|Q0KCT4.1|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16]
Length = 723
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 353
>gi|42782895|ref|NP_980142.1| polynucleotide phosphorylase [Bacillus cereus ATCC 10987]
gi|402556072|ref|YP_006597343.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus FRI-35]
gi|81409473|sp|Q732R5.1|PNP_BACC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|42738822|gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10987]
gi|401797282|gb|AFQ11141.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus FRI-35]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|423511841|ref|ZP_17488372.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-1]
gi|402450102|gb|EJV81936.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-1]
Length = 722
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|423367850|ref|ZP_17345282.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD142]
gi|401082711|gb|EJP90976.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD142]
Length = 717
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|393780506|ref|ZP_10368719.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 412 str. F0487]
gi|392608457|gb|EIW91309.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
taxon 412 str. F0487]
Length = 735
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGRN Q+RP+ C L AHGS+ +++G+T+ L
Sbjct: 319 RLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSL 355
>gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
2048]
gi|423488982|ref|ZP_17465664.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BtB2-4]
gi|423494707|ref|ZP_17471351.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER057]
gi|423498501|ref|ZP_17475118.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER074]
gi|423661354|ref|ZP_17636523.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM022]
gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
2048]
gi|401150800|gb|EJQ58252.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER057]
gi|401160550|gb|EJQ67928.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER074]
gi|401301395|gb|EJS06984.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM022]
gi|402432230|gb|EJV64289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BtB2-4]
Length = 717
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|229104369|ref|ZP_04235038.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-28]
gi|228679067|gb|EEL33275.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-28]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|229098276|ref|ZP_04229223.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-29]
gi|229117294|ref|ZP_04246672.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
gi|423378354|ref|ZP_17355638.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG1O-2]
gi|423441462|ref|ZP_17418368.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X2-1]
gi|423448312|ref|ZP_17425191.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG5O-1]
gi|423464536|ref|ZP_17441304.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-1]
gi|423533878|ref|ZP_17510296.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB2-9]
gi|423540853|ref|ZP_17517244.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB4-10]
gi|423547091|ref|ZP_17523449.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB5-5]
gi|423615932|ref|ZP_17591766.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD115]
gi|423623117|ref|ZP_17598895.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD148]
gi|228666194|gb|EEL21658.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
gi|228685174|gb|EEL39105.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-29]
gi|401128906|gb|EJQ36589.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG5O-1]
gi|401172041|gb|EJQ79262.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB4-10]
gi|401178812|gb|EJQ85985.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB5-5]
gi|401259890|gb|EJR66064.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD148]
gi|401260469|gb|EJR66642.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD115]
gi|401636620|gb|EJS54374.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG1O-2]
gi|402418123|gb|EJV50423.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X2-1]
gi|402420803|gb|EJV53074.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-1]
gi|402464097|gb|EJV95797.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB2-9]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
gi|423592197|ref|ZP_17568228.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD048]
gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
gi|401232330|gb|EJR38832.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD048]
Length = 717
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|206978199|ref|ZP_03239080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
H3081.97]
gi|217961227|ref|YP_002339795.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH187]
gi|222097252|ref|YP_002531309.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus Q1]
gi|229140448|ref|ZP_04269003.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST26]
gi|229197917|ref|ZP_04324633.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
gi|375285729|ref|YP_005106168.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NC7401]
gi|384181617|ref|YP_005567379.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|423353509|ref|ZP_17331136.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus IS075]
gi|423374396|ref|ZP_17351734.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AND1407]
gi|423567298|ref|ZP_17543545.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A12]
gi|423574587|ref|ZP_17550706.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-D12]
gi|423604566|ref|ZP_17580459.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD102]
gi|226702618|sp|B7HLE0.1|PNP_BACC7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782706|sp|B9IV96.1|PNP_BACCQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206743616|gb|EDZ55042.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
H3081.97]
gi|217066515|gb|ACJ80765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH187]
gi|221241310|gb|ACM14020.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus Q1]
gi|228585635|gb|EEK43737.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
gi|228643009|gb|EEK99285.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST26]
gi|324327701|gb|ADY22961.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|358354256|dbj|BAL19428.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NC7401]
gi|401089322|gb|EJP97493.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus IS075]
gi|401094308|gb|EJQ02390.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AND1407]
gi|401212112|gb|EJR18858.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-D12]
gi|401214386|gb|EJR21116.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A12]
gi|401245186|gb|EJR51544.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD102]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|157364256|ref|YP_001471023.1| polynucleotide phosphorylase/polyadenylase [Thermotoga lettingae
TMO]
gi|187611328|sp|A8F725.1|PNP_THELT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157314860|gb|ABV33959.1| Polyribonucleotide nucleotidyltransferase [Thermotoga lettingae
TMO]
Length = 710
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E R D R P +RP+ C +L R HGSA +++G+T+ L
Sbjct: 314 EGTRLDMRKPKDIRPITCETGLLPRVHGSALFTRGETQSLG 354
>gi|154485033|ref|ZP_02027481.1| hypothetical protein EUBVEN_02751 [Eubacterium ventriosum ATCC
27560]
gi|149733986|gb|EDM50105.1| polyribonucleotide nucleotidyltransferase [Eubacterium ventriosum
ATCC 27560]
Length = 688
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKV 40
R DGR +Q+RPLA I+ R HGSA +++G T++
Sbjct: 306 RPDGRALDQIRPLAAEVDIVPRVHGSAMFTRGQTQI 341
>gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus
weihenstephanensis KBAB4]
gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST196]
gi|423452892|ref|ZP_17429745.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X1-1]
gi|423518497|ref|ZP_17494978.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-4]
gi|423598882|ref|ZP_17574882.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD078]
gi|423669381|ref|ZP_17644410.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM034]
gi|423674440|ref|ZP_17649379.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM062]
gi|226702619|sp|A9VT44.1|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus
weihenstephanensis KBAB4]
gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST196]
gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
gi|401139451|gb|EJQ47013.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X1-1]
gi|401160705|gb|EJQ68080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-4]
gi|401237152|gb|EJR43609.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD078]
gi|401298508|gb|EJS04108.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM034]
gi|401309991|gb|EJS15324.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM062]
Length = 717
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|32473910|ref|NP_866904.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
SH 1]
gi|32444447|emb|CAD74445.1| polyribonucleotide nucleotidyltransferase [Rhodopirellula baltica
SH 1]
Length = 818
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ N LR + C +L R HGSA + +G+T+ L
Sbjct: 381 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQAL 417
>gi|423522363|ref|ZP_17498836.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA4-10]
gi|401175057|gb|EJQ82260.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA4-10]
Length = 717
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|423483397|ref|ZP_17460087.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-2]
gi|401140948|gb|EJQ48503.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-2]
Length = 717
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|417306445|ref|ZP_12093350.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
WH47]
gi|327537258|gb|EGF23997.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
WH47]
Length = 819
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ N LR + C +L R HGSA + +G+T+ L
Sbjct: 381 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQAL 417
>gi|301055297|ref|YP_003793508.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
anthracis str. CI]
gi|300377466|gb|ADK06370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
anthracis str. CI]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|229019001|ref|ZP_04175843.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
gi|229025246|ref|ZP_04181668.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
gi|423389886|ref|ZP_17367112.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-3]
gi|423418286|ref|ZP_17395375.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-1]
gi|228736074|gb|EEL86647.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
gi|228742329|gb|EEL92487.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
gi|401106559|gb|EJQ14520.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-1]
gi|401641977|gb|EJS59694.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-3]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|449134712|ref|ZP_21770181.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula europaea
6C]
gi|448886581|gb|EMB16983.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula europaea
6C]
Length = 815
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ N LR + C +L R HGSA + +G+T+ L
Sbjct: 381 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQAL 417
>gi|407706267|ref|YP_006829852.1| cell division protein FtsL [Bacillus thuringiensis MC28]
gi|407383952|gb|AFU14453.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
MC28]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|423395894|ref|ZP_17373095.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-1]
gi|423406770|ref|ZP_17383919.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-3]
gi|401653636|gb|EJS71180.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-1]
gi|401660060|gb|EJS77543.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-3]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|376267701|ref|YP_005120413.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F837/76]
gi|364513501|gb|AEW56900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F837/76]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|355698284|gb|EHH28832.1| hypothetical protein EGK_19355 [Macaca mulatta]
Length = 247
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 22/118 (18%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------------KNENPEKV 51
R DGR +LR + + +A GSA QG+TK LA P++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASIRGSRARALPDRA 72
Query: 52 SIEVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ + S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 130
>gi|228902310|ref|ZP_04066467.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 4222]
gi|434376910|ref|YP_006611554.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-789]
gi|228857279|gb|EEN01782.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 4222]
gi|401875467|gb|AFQ27634.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-789]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|228947527|ref|ZP_04109817.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228812047|gb|EEM58378.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
DSM 12442]
gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock3-17]
gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock1-4]
gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock1-4]
gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock3-17]
gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
DSM 12442]
Length = 717
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|225865786|ref|YP_002751164.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
gi|254782705|sp|C1EP29.1|PNP_BACC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225790852|gb|ACO31069.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|218898959|ref|YP_002447370.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus G9842]
gi|228966752|ref|ZP_04127796.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402558867|ref|YP_006601591.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-771]
gi|423561787|ref|ZP_17538063.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A1]
gi|226702616|sp|B7IUG5.1|PNP_BACC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218542651|gb|ACK95045.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
gi|228792851|gb|EEM40409.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|401202044|gb|EJR08909.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A1]
gi|401787519|gb|AFQ13558.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-771]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|218904934|ref|YP_002452768.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH820]
gi|226702597|sp|B7JJ84.1|PNP_BACC0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218539646|gb|ACK92044.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|47569084|ref|ZP_00239773.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
gi|49478386|ref|YP_037868.1| polynucleotide phosphorylase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141682|ref|YP_085148.1| polynucleotide phosphorylase [Bacillus cereus E33L]
gi|118479027|ref|YP_896178.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
str. Al Hakam]
gi|165872621|ref|ZP_02217252.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0488]
gi|167635853|ref|ZP_02394162.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0442]
gi|167639866|ref|ZP_02398135.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0193]
gi|170687834|ref|ZP_02879048.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0465]
gi|177652128|ref|ZP_02934674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0174]
gi|190568447|ref|ZP_03021354.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Tsiankovskii-I]
gi|196042164|ref|ZP_03109447.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
NVH0597-99]
gi|196044582|ref|ZP_03111817.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
gi|227813285|ref|YP_002813294.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
CDC 684]
gi|228928856|ref|ZP_04091888.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935122|ref|ZP_04097949.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228986950|ref|ZP_04147076.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229092848|ref|ZP_04223982.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-42]
gi|229123320|ref|ZP_04252524.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
gi|229157384|ref|ZP_04285462.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
4342]
gi|229186044|ref|ZP_04313214.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
6E1]
gi|254683486|ref|ZP_05147346.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
CNEVA-9066]
gi|254735845|ref|ZP_05193551.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Western North America USA6153]
gi|254739629|ref|ZP_05197323.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Kruger B]
gi|254755998|ref|ZP_05208029.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Vollum]
gi|386737630|ref|YP_006210811.1| Polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
H9401]
gi|421507348|ref|ZP_15954268.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
UR-1]
gi|421639561|ref|ZP_16080152.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
BF1]
gi|423550444|ref|ZP_17526771.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ISP3191]
gi|81395117|sp|Q6HF08.1|PNP_BACHK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81686592|sp|Q636L9.1|PNP_BACCZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470934|sp|A0RHH8.1|PNP_BACAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782704|sp|C3L7C0.1|PNP_BACAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|47554246|gb|EAL12608.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
gi|49329942|gb|AAT60588.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|51975151|gb|AAU16701.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus E33L]
gi|118418252|gb|ABK86671.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
str. Al Hakam]
gi|164711653|gb|EDR17199.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0488]
gi|167512267|gb|EDR87644.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0193]
gi|167528810|gb|EDR91568.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0442]
gi|170668150|gb|EDT18899.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0465]
gi|172082497|gb|EDT67562.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0174]
gi|190560451|gb|EDV14429.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Tsiankovskii-I]
gi|196024617|gb|EDX63289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
gi|196027016|gb|EDX65640.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
NVH0597-99]
gi|227006240|gb|ACP15983.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
CDC 684]
gi|228597463|gb|EEK55113.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
6E1]
gi|228626111|gb|EEK82860.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
4342]
gi|228660096|gb|EEL15732.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
gi|228690470|gb|EEL44253.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-42]
gi|228772728|gb|EEM21168.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228824487|gb|EEM70292.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830663|gb|EEM76268.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|384387482|gb|AFH85143.1| Polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
H9401]
gi|401190060|gb|EJQ97110.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ISP3191]
gi|401822482|gb|EJT21632.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
UR-1]
gi|403393226|gb|EJY90471.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
BF1]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|30263811|ref|NP_846188.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Ames]
gi|47529234|ref|YP_020583.1| polynucleotide phosphorylase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186657|ref|YP_029909.1| polynucleotide phosphorylase [Bacillus anthracis str. Sterne]
gi|65321134|ref|ZP_00394093.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Bacillus anthracis str. A2012]
gi|170706809|ref|ZP_02897267.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0389]
gi|229603609|ref|YP_002868046.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
A0248]
gi|254759341|ref|ZP_05211366.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Australia 94]
gi|81583685|sp|Q81WM8.1|PNP_BACAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782703|sp|C3P5L0.1|PNP_BACAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|30258455|gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Ames]
gi|47504382|gb|AAT33058.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
'Ames Ancestor']
gi|49180584|gb|AAT55960.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Sterne]
gi|170128227|gb|EDS97096.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0389]
gi|229268017|gb|ACQ49654.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0248]
Length = 712
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|407938227|ref|YP_006853868.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. KKS102]
gi|407896021|gb|AFU45230.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. KKS102]
Length = 747
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+ +RP+ S+L RAHGSA +++G+T+ L E+
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRAHGSALFTRGETQALVVTTLGTER 362
>gi|407767985|ref|ZP_11115364.1| polynucleotide phosphorylase/polyadenylase [Thalassospira
xiamenensis M-5 = DSM 17429]
gi|407288698|gb|EKF14175.1| polynucleotide phosphorylase/polyadenylase [Thalassospira
xiamenensis M-5 = DSM 17429]
Length = 708
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+ S+L RAHGSA +++G+T+ LA
Sbjct: 317 RIDGRTGADVRPILGEVSVLPRAHGSAIFTRGETQALA 354
>gi|197106893|ref|YP_002132270.1| polynucleotide phosphorylase [Phenylobacterium zucineum HLK1]
gi|226702673|sp|B4RC48.1|PNP_PHEZH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|196480313|gb|ACG79841.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
zucineum HLK1]
Length = 715
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +Q+RP+ +L RAHGSA +++G+T+ L
Sbjct: 317 RIDGRTVDQVRPILGEVGVLPRAHGSALFTRGETQAL 353
>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
Length = 271
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-----------KNENPEKVSI 53
R DGR +LR + + +A GSA QG+TK LA P++ +
Sbjct: 39 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 98
Query: 54 EVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 99 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 154
>gi|355780009|gb|EHH64485.1| hypothetical protein EGM_17708 [Macaca fascicularis]
Length = 247
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 22/118 (18%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-------------KNENPEKV 51
R DGR +LR + + +A GSA QG+TK LA P++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAXIRGSRARALPDRA 72
Query: 52 SIEVIWKSKTGQIGKQEK---------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ + S T G++++ E + L++T ++ + ++P + + +QV
Sbjct: 73 LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 130
>gi|256544705|ref|ZP_05472077.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis
ATCC 51170]
gi|256399594|gb|EEU13199.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis
ATCC 51170]
Length = 702
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL+ +L RAHGS + +G T+VL+
Sbjct: 312 RPDGRKMDEIRPLSAEAGLLPRAHGSGLFQRGQTQVLS 349
>gi|27262520|gb|AAN87541.1| Polyribonucleotide nucleotidyltransferase [Heliobacillus mobilis]
Length = 445
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR +++RP+ IL R HGSA +++G T+VL
Sbjct: 332 RPDGRKVDEIRPITVEVGILPRTHGSALFTRGQTQVL 368
>gi|354499539|ref|XP_003511866.1| PREDICTED: exosome complex component RRP46-like [Cricetulus
griseus]
Length = 279
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 30 SASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYEMILKRTLQ 80
SA ++ DT VLA E K ++EVI + K G G EK E +++ T +
Sbjct: 99 SALRTRRDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCE 158
Query: 81 SICILTINPNTTTSVIIQV 99
++ + ++P T+ +V++QV
Sbjct: 159 AVVLGALHPRTSITVVLQV 177
>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
Length = 246
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR +LRP+ +L A GSA G K+LAA + P++ +
Sbjct: 16 RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDRAILR 75
Query: 55 VIWKSKTGQIGKQEK--------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + +++K E +++ L+ IL + P T V I+V
Sbjct: 76 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVL 129
>gi|254722007|ref|ZP_05183796.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
A1055]
Length = 712
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|228909631|ref|ZP_04073454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 200]
gi|228849920|gb|EEM94751.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 200]
Length = 712
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|228940895|ref|ZP_04103454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973824|ref|ZP_04134400.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980413|ref|ZP_04140723.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
Bt407]
gi|384187864|ref|YP_005573760.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar chinensis CT-43]
gi|410676180|ref|YP_006928551.1| polyribonucleotide nucleotidyltransferase Pnp [Bacillus
thuringiensis Bt407]
gi|423385310|ref|ZP_17362566.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-2]
gi|423528332|ref|ZP_17504777.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB1-1]
gi|452200244|ref|YP_007480325.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
gi|228779233|gb|EEM27490.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
Bt407]
gi|228785849|gb|EEM33852.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818731|gb|EEM64797.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326941573|gb|AEA17469.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar chinensis CT-43]
gi|401635366|gb|EJS53121.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-2]
gi|402451995|gb|EJV83814.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB1-1]
gi|409175309|gb|AFV19614.1| polyribonucleotide nucleotidyltransferase Pnp [Bacillus
thuringiensis Bt407]
gi|452105637|gb|AGG02577.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
Length = 712
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|218232388|ref|YP_002368608.1| polynucleotide phosphorylase [Bacillus cereus B4264]
gi|226702617|sp|B7HDT0.1|PNP_BACC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218160345|gb|ACK60337.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus B4264]
Length = 712
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|138894789|ref|YP_001125242.1| polynucleotide phosphorylase [Geobacillus thermodenitrificans
NG80-2]
gi|196247587|ref|ZP_03146289.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
gi|187610268|sp|A4IME3.1|PNP_GEOTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|134266302|gb|ABO66497.1| Polynucleotide phosphorylase PNPase [Geobacillus
thermodenitrificans NG80-2]
gi|196212371|gb|EDY07128.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
Length = 722
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL+ IL R HGS +++G T+VL+
Sbjct: 316 RPDGRKVDEIRPLSSAVGILPRTHGSGLFTRGQTQVLS 353
>gi|440714911|ref|ZP_20895480.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
SWK14]
gi|436440283|gb|ELP33635.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
SWK14]
Length = 746
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ N LR + C +L R HGSA + +G+T+ L
Sbjct: 309 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQAL 345
>gi|406972797|gb|EKD96457.1| hypothetical protein ACD_24C00036G0003, partial [uncultured
bacterium]
Length = 742
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR +RP++ S+L R HGSA +S+G T+VL
Sbjct: 312 EGKRPDGRGIKDIRPISSSISVLPRTHGSALFSRGITQVL 351
>gi|389843097|ref|YP_006345177.1| polyribonucleotide nucleotidyltransferase [Mesotoga prima
MesG1.Ag.4.2]
gi|387857843|gb|AFK05934.1| polyribonucleotide nucleotidyltransferase [Mesotoga prima
MesG1.Ag.4.2]
Length = 730
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR N++RP+ +L RAHGSA +++G+T+ L
Sbjct: 323 RMDGRKHNEIRPINIELDLLPRAHGSALFTRGETQSLG 360
>gi|256005694|ref|ZP_05430650.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
DSM 2360]
gi|385779145|ref|YP_005688310.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
DSM 1313]
gi|419722650|ref|ZP_14249789.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
AD2]
gi|419725266|ref|ZP_14252317.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
YS]
gi|255990325|gb|EEU00451.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
DSM 2360]
gi|316940825|gb|ADU74859.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
DSM 1313]
gi|380771352|gb|EIC05221.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
YS]
gi|380781310|gb|EIC10969.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
AD2]
Length = 700
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ +L R HGS +++G T+VL++
Sbjct: 312 RVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSS 350
>gi|297584087|ref|YP_003699867.1| polyribonucleotide nucleotidyltransferase [Bacillus
selenitireducens MLS10]
gi|297142544|gb|ADH99301.1| polyribonucleotide nucleotidyltransferase [Bacillus
selenitireducens MLS10]
Length = 700
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPL+ IL RAHGS +++G T+ L+
Sbjct: 316 RPDGRKVDEIRPLSSEVDILPRAHGSGLFTRGQTQALS 353
>gi|125972939|ref|YP_001036849.1| polynucleotide phosphorylase/polyadenylase [Clostridium
thermocellum ATCC 27405]
gi|281417150|ref|ZP_06248170.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
JW20]
gi|187610261|sp|A3DCH7.1|PNP_CLOTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|125713164|gb|ABN51656.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
ATCC 27405]
gi|281408552|gb|EFB38810.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
JW20]
Length = 700
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR +++RPL+ +L R HGS +++G T+VL++
Sbjct: 312 RVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSS 350
>gi|421746948|ref|ZP_16184705.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus necator
HPC(L)]
gi|409774480|gb|EKN56095.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus necator
HPC(L)]
Length = 723
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 353
>gi|326202154|ref|ZP_08192024.1| polyribonucleotide nucleotidyltransferase [Clostridium
papyrosolvens DSM 2782]
gi|325987949|gb|EGD48775.1| polyribonucleotide nucleotidyltransferase [Clostridium
papyrosolvens DSM 2782]
Length = 706
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
E R DGR+ +++RPL+ IL R HGS + +G T+VL
Sbjct: 312 EGKRVDGRSLDEIRPLSAEVGILPRTHGSGLFQRGQTQVL 351
>gi|253682340|ref|ZP_04863137.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D
str. 1873]
gi|253562052|gb|EES91504.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D
str. 1873]
Length = 706
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E R DGR+ +++RPL+ S+L R HGS +S+G T+V++
Sbjct: 309 EKRRPDGRSFDEIRPLSAETSLLPRTHGSGLFSRGLTQVMS 349
>gi|228960024|ref|ZP_04121688.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423628900|ref|ZP_17604649.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD154]
gi|228799540|gb|EEM46493.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401268445|gb|EJR74493.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD154]
Length = 712
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST24]
gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST24]
Length = 717
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|229180084|ref|ZP_04307428.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
gi|423412388|ref|ZP_17389508.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG3O-2]
gi|423431827|ref|ZP_17408831.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG4O-1]
gi|228603293|gb|EEK60770.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
gi|401104456|gb|EJQ12433.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG3O-2]
gi|401116583|gb|EJQ24421.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG4O-1]
Length = 712
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|228922561|ref|ZP_04085861.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228954083|ref|ZP_04116112.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229047493|ref|ZP_04193083.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
gi|229071305|ref|ZP_04204528.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
gi|229081062|ref|ZP_04213572.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
gi|229111278|ref|ZP_04240831.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock1-15]
gi|229129083|ref|ZP_04258056.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-Cer4]
gi|229152007|ref|ZP_04280202.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
gi|229191976|ref|ZP_04318946.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10876]
gi|296504303|ref|YP_003666003.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
BMB171]
gi|365159416|ref|ZP_09355597.1| polyribonucleotide nucleotidyltransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|423425943|ref|ZP_17402974.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-2]
gi|423437262|ref|ZP_17414243.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X12-1]
gi|423503516|ref|ZP_17480108.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HD73]
gi|423582017|ref|ZP_17558128.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD014]
gi|423585784|ref|ZP_17561871.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD045]
gi|423635422|ref|ZP_17611075.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD156]
gi|423641112|ref|ZP_17616730.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD166]
gi|423649670|ref|ZP_17625240.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD169]
gi|423656666|ref|ZP_17631965.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD200]
gi|449090749|ref|YP_007423190.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|228591527|gb|EEK49376.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10876]
gi|228631356|gb|EEK87990.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
gi|228654320|gb|EEL10185.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-Cer4]
gi|228672054|gb|EEL27345.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock1-15]
gi|228702106|gb|EEL54582.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
gi|228711759|gb|EEL63711.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
gi|228723740|gb|EEL75095.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
gi|228805649|gb|EEM52239.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228836990|gb|EEM82331.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|296325355|gb|ADH08283.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
BMB171]
gi|363625414|gb|EHL76455.1| polyribonucleotide nucleotidyltransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|401110690|gb|EJQ18589.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-2]
gi|401120417|gb|EJQ28213.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X12-1]
gi|401212896|gb|EJR19637.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD014]
gi|401233130|gb|EJR39626.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD045]
gi|401278173|gb|EJR84109.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD156]
gi|401280173|gb|EJR86095.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD166]
gi|401282950|gb|EJR88847.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD169]
gi|401290407|gb|EJR96101.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD200]
gi|402458870|gb|EJV90610.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HD73]
gi|449024506|gb|AGE79669.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 712
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
LMG 19424]
gi|226702643|sp|B3R3W3.1|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
LMG 19424]
Length = 723
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ S+L RAHGSA +++G+T+ L
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQAL 353
>gi|149909276|ref|ZP_01897932.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
gi|149807593|gb|EDM67541.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
Length = 705
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
R DGR+P +R L+ +L R HGSA +++G+T+ L E+
Sbjct: 314 RIDGRDPEMIRALSVMTGVLPRTHGSALFTRGETQALVTATLGTER 359
>gi|398814365|ref|ZP_10573046.1| polyribonucleotide nucleotidyltransferase [Brevibacillus sp. BC25]
gi|398036634|gb|EJL29843.1| polyribonucleotide nucleotidyltransferase [Brevibacillus sp. BC25]
Length = 715
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR ++RPL+ +IL R HGSA +++G T+ L+
Sbjct: 318 RPDGRALGEIRPLSSETTILSRTHGSAMFTRGQTQALS 355
>gi|350561994|ref|ZP_08930831.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349780312|gb|EGZ34647.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 694
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ +L RAHGSA +++G+T+ L
Sbjct: 314 RIDGRDTRSVRPITVQTGVLPRAHGSAVFTRGETQAL 350
>gi|423612024|ref|ZP_17587885.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD107]
gi|401247031|gb|EJR53375.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD107]
Length = 717
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|289207914|ref|YP_003459980.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
K90mix]
gi|288943545|gb|ADC71244.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
K90mix]
Length = 695
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP++ S+L R HGSA +++G+T+ L
Sbjct: 314 RIDGRDNKTVRPISVQTSVLPRTHGSAVFTRGETQAL 350
>gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
KB13]
gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
KB13]
Length = 710
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR+ +RP+ S+L R HGSA +++G+T+ LA
Sbjct: 320 RIDGRDTRTVRPIEISTSVLPRTHGSALFTRGETQALA 357
>gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
Length = 712
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RPLA IL R HGS +++G T+ L+
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALS 353
>gi|453089972|gb|EMF18012.1| hypothetical protein SEPMUDRAFT_15620, partial [Mycosphaerella
populorum SO2202]
Length = 197
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 24 LHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEYEMI 74
L RA GS +S V+A ++E P++ +IEV + +G G +E+ E +
Sbjct: 10 LARADGSTVFSDDLYTVIAGVNGPVDVQRRDELPDQAAIEVNLRPTSGVGGPRERWLETV 69
Query: 75 LKRTLQSICILTINPNTTTSVIIQV 99
++ L+SI ++ ++P T V +Q+
Sbjct: 70 IQSVLKSIVLVHMHPRTLIQVTLQI 94
>gi|85860514|ref|YP_462716.1| polynucleotide phosphorylase [Syntrophus aciditrophicus SB]
gi|123752513|sp|Q2LWT4.1|PNP_SYNAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|85723605|gb|ABC78548.1| polyribonucleotide nucleotidyltransferase [Syntrophus
aciditrophicus SB]
Length = 705
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
E R DGR+ ++R ++ IL RAHGSA +++G+T+ LAA
Sbjct: 320 EKQRIDGRSYAEIRAISAEVGILPRAHGSALFNRGETQSLAA 361
>gi|421609596|ref|ZP_16050786.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
SH28]
gi|408499692|gb|EKK04161.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
SH28]
Length = 754
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ N LR + C +L R HGSA + +G+T+ L
Sbjct: 316 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQAL 352
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.129 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,584,266,604
Number of Sequences: 23463169
Number of extensions: 52166013
Number of successful extensions: 133482
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3253
Number of HSP's successfully gapped in prelim test: 317
Number of HSP's that attempted gapping in prelim test: 129995
Number of HSP's gapped (non-prelim): 3633
length of query: 100
length of database: 8,064,228,071
effective HSP length: 69
effective length of query: 31
effective length of database: 6,445,269,410
effective search space: 199803351710
effective search space used: 199803351710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)