BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047153
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84T68|EXOS5_ORYSJ Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp.
japonica GN=RRP46 PE=1 SV=2
Length = 238
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/108 (71%), Positives = 85/108 (78%), Gaps = 9/108 (8%)
Query: 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKV 51
ME RADGRNPNQLRP +C + L RAHGSA W+QGDT VLAA K ENPEK
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 52 SIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
SIEV+WK TGQIGKQEKEYEM LKRTLQSIC+LT++PNTTTSVI+QV
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108
>sp|Q9NQT4|EXOS5_HUMAN Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1
Length = 235
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 9 RNPN-QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWK 58
R P LR AC ++L R GSAS+ QGDT VLA E K ++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 59 SKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
K G G EK E +++ T +++ + T++P T+ +V++QV
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQV 122
>sp|Q9CRA8|EXOS5_MOUSE Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1
Length = 235
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 14 LRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQI 64
LR AC ++L R GSAS+ QGDT VLA E K ++EVI + K G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 65 GKQEKEYEMILKRTLQSICILTINPNTTTSVIIQV 99
G EK E +++ T +++ + ++P T+ +V++QV
Sbjct: 88 GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQV 122
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNEN------PEKVSIE 54
R DGR ++LRP+ +L A GSA + G+TKV+AA K + P+K S+
Sbjct: 16 RTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S +L + P T + ++V
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVL 129
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNEN------PEKVSIE 54
R DGR P+++RP+ +L A GSA + G+TKV+AA K + P++ +
Sbjct: 16 RLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLR 75
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ + P T V ++V
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVL 129
>sp|Q69LE7|PNP1_ORYSJ Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
OS=Oryza sativa subsp. japonica GN=PNP1 PE=2 SV=1
Length = 902
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA
Sbjct: 448 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALA 485
>sp|B9K8Y9|PNP_THENN Polyribonucleotide nucleotidyltransferase OS=Thermotoga neapolitana
(strain ATCC 49049 / DSM 4359 / NS-E) GN=pnp PE=3 SV=1
Length = 707
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR PN++RP++C + R HGSA +++G+T+ L
Sbjct: 317 RADGRKPNEIRPISCEVGLFPRTHGSALFTRGETQSLG 354
>sp|B5YHN2|PNP_THEYD Polyribonucleotide nucleotidyltransferase OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
GN=pnp PE=3 SV=1
Length = 710
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKV 51
RADGR +++RP+ C IL R HGSA +++G+T+ L A +E+ +KV
Sbjct: 320 RADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLGTSEDEQKV 370
>sp|A6LNF5|PNP_THEM4 Polyribonucleotide nucleotidyltransferase OS=Thermosipho
melanesiensis (strain BI429 / DSM 12029) GN=pnp PE=3
SV=1
Length = 699
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P ++RP+ C +L R HGSA +++G+T+ L
Sbjct: 322 RADGRTPEEIRPITCEVGVLPRTHGSALFTRGETQSLG 359
>sp|B8E2S5|PNP_DICTD Polyribonucleotide nucleotidyltransferase OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=pnp PE=3 SV=1
Length = 693
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E R DGR N+LRP++C +L R HGSA + +G+T+VL+
Sbjct: 312 EKRRVDGRRLNELRPVSCEVGVLSRVHGSALFQRGETQVLS 352
>sp|Q3A4A1|PNP_PELCD Polyribonucleotide nucleotidyltransferase OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=pnp PE=3
SV=1
Length = 699
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ N +RP+ C +L RAHGSA +++G+T+ L A
Sbjct: 313 RIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVA 351
>sp|Q5SJ75|PNP_THET8 Polyribonucleotide nucleotidyltransferase OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=pnp PE=3 SV=1
Length = 713
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P LRP+ +L RAHGSA +++G+T+VL
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
>sp|Q9ZAE1|PNP_THETH Polyribonucleotide nucleotidyltransferase OS=Thermus thermophilus
GN=pnp PE=3 SV=1
Length = 713
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P LRP+ +L RAHGSA +++G+T+VL
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
>sp|Q72JJ8|PNP_THET2 Polyribonucleotide nucleotidyltransferase OS=Thermus thermophilus
(strain HB27 / ATCC BAA-163 / DSM 7039) GN=pnp PE=3 SV=1
Length = 713
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E RADGR P LRP+ +L RAHGSA +++G+T+VL
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLG 364
>sp|B5YEB0|PNP_DICT6 Polyribonucleotide nucleotidyltransferase OS=Dictyoglomus
thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)
GN=pnp PE=3 SV=1
Length = 693
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
E R DGR N++RP++C +L R HGSA + +G+T+VL+
Sbjct: 312 EKRRVDGRKLNEIRPVSCEVGVLKRVHGSALFQRGETQVLS 352
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1
Length = 255
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVSIE------ 54
R DGR P QLRP+ +L A GSA G T+V+AA + +P V++
Sbjct: 25 RHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIR 84
Query: 55 --------VIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ KT ++E E +++ L+++ I + P T V ++V
Sbjct: 85 CRYHMAPFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVL 138
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1447 PE=3 SV=1
Length = 246
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN----------PEKVSIE 54
R DGR P LRP+ ILH A GSA G T+VLAA P++ ++
Sbjct: 17 RHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALR 76
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K+ ++E E +++ L+ + + P T V ++V
Sbjct: 77 VRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVL 130
>sp|A5IMM8|PNP_THEP1 Polyribonucleotide nucleotidyltransferase OS=Thermotoga petrophila
(strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=pnp PE=3
SV=1
Length = 708
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P ++RP++C + R HGSA +++G+T+ L
Sbjct: 317 RADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLG 354
>sp|B1LBY0|PNP_THESQ Polyribonucleotide nucleotidyltransferase OS=Thermotoga sp. (strain
RQ2) GN=pnp PE=3 SV=1
Length = 708
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P ++RP++C + R HGSA +++G+T+ L
Sbjct: 317 RADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLG 354
>sp|Q9X166|PNP_THEMA Polyribonucleotide nucleotidyltransferase OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=pnp
PE=3 SV=1
Length = 708
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P ++RP++C + R HGSA +++G+T+ L
Sbjct: 317 RADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLG 354
>sp|A1R0N0|PNP_BORT9 Polyribonucleotide nucleotidyltransferase OS=Borrelia turicatae
(strain 91E135) GN=pnp PE=3 SV=2
Length = 717
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGRNP Q+R + +L R HGSA +++G+T+ LA
Sbjct: 316 RTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALA 353
>sp|A7HK24|PNP_FERNB Polyribonucleotide nucleotidyltransferase OS=Fervidobacterium
nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=pnp
PE=3 SV=1
Length = 693
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR P +RP+ C +L R HGS+ +++G+T+ L
Sbjct: 319 RADGRGPKDIRPITCEVGLLPRTHGSSLFTRGETQSLG 356
>sp|A0LE14|PNP_MAGSM Polyribonucleotide nucleotidyltransferase OS=Magnetococcus sp.
(strain MC-1) GN=pnp PE=3 SV=1
Length = 701
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +RP+AC SIL R HG+A +++G+T+ +A
Sbjct: 318 RVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIA 355
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----KNENPEKVS------IE 54
R DGR P++LR + +L A GSA + G+TK +AA K +P +S +
Sbjct: 19 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 78
Query: 55 VIW--------KSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100
V + + K ++E E +++ L+S ++ + P T V ++
Sbjct: 79 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEIL 132
>sp|B3EAF2|PNP_GEOLS Polyribonucleotide nucleotidyltransferase OS=Geobacter lovleyi
(strain ATCC BAA-1151 / DSM 17278 / SZ) GN=pnp PE=3 SV=1
Length = 703
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ +RP+A +L RAHGS +++G+T+VLAA
Sbjct: 315 RIDGRDTKTVRPIAIEAGLLPRAHGSTLFTRGETQVLAA 353
>sp|B1ZS98|PNP_OPITP Polyribonucleotide nucleotidyltransferase OS=Opitutus terrae
(strain DSM 11246 / PB90-1) GN=pnp PE=3 SV=1
Length = 730
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
RADGR +RPL +L R HGSA + +GDT+ +A P K
Sbjct: 316 RADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTLGPTK 361
>sp|Q65ZW8|PNP_BORGA Polyribonucleotide nucleotidyltransferase OS=Borrelia garinii
(strain PBi) GN=pnp PE=3 SV=2
Length = 721
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALA 353
>sp|Q2RJL9|PNP_MOOTA Polyribonucleotide nucleotidyltransferase OS=Moorella thermoacetica
(strain ATCC 39073) GN=pnp PE=3 SV=1
Length = 747
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENP 48
R DGR ++RP+ C +L R HGS +++G+T+VL P
Sbjct: 331 RVDGRTLEEIRPITCEVGVLSRTHGSGLFTRGETQVLTVTTLGP 374
>sp|B7J0Q1|PNP_BORBZ Polyribonucleotide nucleotidyltransferase OS=Borrelia burgdorferi
(strain ZS7) GN=pnp PE=3 SV=1
Length = 722
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALA 353
>sp|O51745|PNP_BORBU Polyribonucleotide nucleotidyltransferase OS=Borrelia burgdorferi
(strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=pnp
PE=3 SV=2
Length = 716
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGSA +++G+T+ LA
Sbjct: 310 RTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALA 347
>sp|B7IE23|PNP_THEAB Polyribonucleotide nucleotidyltransferase OS=Thermosipho africanus
(strain TCF52B) GN=pnp PE=3 SV=1
Length = 697
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
RADGR +++RP+ C +L R HGSA +++G+T+ L
Sbjct: 321 RADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLG 358
>sp|Q8GZQ3|PNP1_ARATH Polyribonucleotide nucleotidyltransferase 1, chloroplastic
OS=Arabidopsis thaliana GN=PNP1 PE=1 SV=1
Length = 922
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R+DGR +++RP+ C +L RAHGS +++G+T+ LA
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALA 484
>sp|B2S4C3|PNP_TREPS Polyribonucleotide nucleotidyltransferase OS=Treponema pallidum
subsp. pallidum (strain SS14) GN=pnp PE=3 SV=1
Length = 702
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR + +RP+AC +L R HGSA +++G+T+ LA
Sbjct: 314 RIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLA 351
>sp|O83856|PNP_TREPA Polyribonucleotide nucleotidyltransferase OS=Treponema pallidum
(strain Nichols) GN=pnp PE=3 SV=1
Length = 702
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR + +RP+AC +L R HGSA +++G+T+ LA
Sbjct: 314 RIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLA 351
>sp|A8M758|PNP_SALAI Polyribonucleotide nucleotidyltransferase OS=Salinispora arenicola
(strain CNS-205) GN=pnp PE=3 SV=1
Length = 786
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +RPL +L R HGSA + +G+T++L N
Sbjct: 341 RIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQILGVTTLN 383
>sp|A8ZZ59|PNP_DESOH Polyribonucleotide nucleotidyltransferase OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=pnp PE=3 SV=1
Length = 721
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR +++RP++C +L R HGSA +++G+T+VL
Sbjct: 314 RIDGRAFDEVRPISCEVGVLPRTHGSALFTRGETQVLG 351
>sp|Q74CS9|PNP_GEOSL Polyribonucleotide nucleotidyltransferase OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=pnp PE=3 SV=1
Length = 697
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGR+ +RP++ S+L RAHGSA +++G+T+ L A
Sbjct: 313 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVA 351
>sp|Q3B2E2|PNP_PELLD Polyribonucleotide nucleotidyltransferase OS=Pelodictyon luteolum
(strain DSM 273) GN=pnp PE=3 SV=1
Length = 732
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA 43
R DGRN Q+RP+ ++ RAHGSA +++G+T+ L A
Sbjct: 332 RLDGRNLEQVRPITIELGVIPRAHGSALFTRGETQALVA 370
>sp|A4X4P8|PNP_SALTO Polyribonucleotide nucleotidyltransferase OS=Salinispora tropica
(strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=pnp PE=3
SV=1
Length = 785
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNEN 47
R DGR P +RPL +L R HGSA + +G+T+++ N
Sbjct: 341 RIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQIMGVTTLN 383
>sp|C1CXB5|PNP_DEIDV Polyribonucleotide nucleotidyltransferase OS=Deinococcus deserti
(strain VCD115 / DSM 17065 / LMG 22923) GN=pnp PE=3 SV=1
Length = 721
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEKVSIEV 55
RADGRN +RP+ L RAHGSA +++G+T+VL E+ I V
Sbjct: 319 RADGRNGRAVRPIWIEARPLPRAHGSAIFTRGETQVLGVATLGTERDEILV 369
>sp|C0ZF43|PNP_BREBN Polyribonucleotide nucleotidyltransferase OS=Brevibacillus brevis
(strain 47 / JCM 6285 / NBRC 100599) GN=pnp PE=3 SV=1
Length = 715
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR N++RPL+ +IL R HGSA +++G T+ L+
Sbjct: 318 RPDGRALNEIRPLSSETTILSRTHGSAMFTRGQTQALS 355
>sp|Q0SM46|PNP_BORAP Polyribonucleotide nucleotidyltransferase OS=Borrelia afzelii
(strain PKo) GN=pnp PE=3 SV=1
Length = 722
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR PN++R + IL R HGS+ +++G+T+ LA
Sbjct: 316 RTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALA 353
>sp|Q4L5X7|PNP_STAHJ Polyribonucleotide nucleotidyltransferase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=pnp PE=3 SV=1
Length = 700
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RPL +L RAHGS +++G T+ L+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALS 356
>sp|Q1J1D0|PNP_DEIGD Polyribonucleotide nucleotidyltransferase OS=Deinococcus
geothermalis (strain DSM 11300) GN=pnp PE=3 SV=1
Length = 721
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAAKNENPEK 50
RADGRN +RP+ L RAHGSA +++G+T+VL E+
Sbjct: 319 RADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLGTER 364
>sp|Q2RMR6|PNP_RHORT Polyribonucleotide nucleotidyltransferase OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=pnp PE=3 SV=1
Length = 708
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ Y IL RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQAL 351
>sp|A5EXU0|PNP_DICNV Polyribonucleotide nucleotidyltransferase OS=Dichelobacter nodosus
(strain VCS1703A) GN=pnp PE=3 SV=1
Length = 693
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVL 41
R DGR+ +RP+ + S+L RAHGSA +++G+T+ L
Sbjct: 315 RIDGRDTKTVRPITIHTSVLPRAHGSALFTRGETQAL 351
>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0381 PE=3 SV=1
Length = 239
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----------KNENPEKVSIE 54
R DGR P+++RPL +L RA GSA G K++AA + P++ +
Sbjct: 15 RLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVVR 74
Query: 55 VIWKSKTGQIGKQEK--------EYEMILKRTLQSICILTINPNTTTSVIIQVW 100
+ + ++++ E + K L+ P T + ++V
Sbjct: 75 FRYNMAPFSVDERKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVL 128
>sp|B8CW78|PNP_HALOH Polyribonucleotide nucleotidyltransferase OS=Halothermothrix orenii
(strain H 168 / OCM 544 / DSM 9562) GN=pnp PE=3 SV=1
Length = 705
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P+++RP+ C L R HGS +++G T+ L+
Sbjct: 321 RPDGRKPDEIRPIWCEVGTLPRVHGSGVFTRGQTQALS 358
>sp|B5RQE3|PNP_BORRA Polyribonucleotide nucleotidyltransferase OS=Borrelia recurrentis
(strain A1) GN=pnp PE=3 SV=1
Length = 717
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R + +L R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALA 353
>sp|B5RMZ9|PNP_BORDL Polyribonucleotide nucleotidyltransferase OS=Borrelia duttonii
(strain Ly) GN=pnp PE=3 SV=1
Length = 717
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 5 RADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLA 42
R DGR P Q+R + +L R HGSA +++G+T+ LA
Sbjct: 316 RTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALA 353
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,396,101
Number of Sequences: 539616
Number of extensions: 1246640
Number of successful extensions: 4148
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 3227
Number of HSP's gapped (non-prelim): 963
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)