Query 047153
Match_columns 100
No_of_seqs 126 out of 1169
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 14:11:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hkm_A OS03G0854200 protein; R 100.0 3.9E-30 1.3E-34 178.6 14.1 100 1-100 1-109 (246)
2 2nn6_D Exosome complex exonucl 100.0 8.5E-29 2.9E-33 170.8 12.6 100 1-100 13-125 (237)
3 3m7n_D Probable exosome comple 99.9 3.9E-27 1.3E-31 164.5 12.0 99 2-100 14-130 (258)
4 2wnr_B Probable exosome comple 99.9 1.5E-26 5E-31 159.8 13.5 99 2-100 14-130 (240)
5 2po1_A Probable exosome comple 99.9 2.9E-26 9.9E-31 159.1 12.6 99 2-100 14-130 (249)
6 2nn6_B Exosome complex exonucl 99.9 4.1E-26 1.4E-30 158.3 12.8 99 2-100 14-132 (249)
7 2wp8_B Exosome complex compone 99.9 1.5E-25 5E-30 155.3 14.0 99 2-100 10-129 (246)
8 2je6_B RRP41, exosome complex 99.9 1.6E-25 5.4E-30 155.4 13.1 99 2-100 18-134 (250)
9 3dd6_A Ribonuclease PH; exorib 99.9 9E-25 3.1E-29 152.3 12.2 98 3-100 10-129 (255)
10 1udn_A Ribonuclease PH, RNAse 99.9 2E-24 6.7E-29 150.4 13.5 97 4-100 1-119 (255)
11 2nn6_F MTR3, exosome component 99.9 1.9E-25 6.4E-30 156.7 7.6 99 2-100 24-151 (272)
12 1r6l_A Ribonuclease PH; beta-a 99.9 2.9E-24 9.9E-29 148.1 13.2 97 4-100 2-120 (239)
13 1oys_A Ribonuclease PH; transf 99.9 5.5E-25 1.9E-29 152.3 9.5 97 4-100 1-119 (245)
14 3b4t_A Ribonuclease PH; RNAse, 99.9 1.7E-24 5.9E-29 151.1 11.1 99 2-100 4-124 (262)
15 3gme_A Polyribonucleotide nucl 99.9 1.7E-24 6E-29 163.5 11.8 98 2-100 312-432 (549)
16 3m7n_G Probable exosome comple 99.9 1.8E-23 6.3E-28 145.7 13.3 99 2-100 20-142 (259)
17 4aid_A Polyribonucleotide nucl 99.9 5.7E-24 2E-28 164.7 10.4 98 2-100 328-448 (726)
18 2po1_B Probable exosome comple 99.9 3.9E-23 1.3E-27 145.2 13.1 99 2-100 24-146 (277)
19 3u1k_A Polyribonucleotide nucl 99.9 1.8E-23 6.2E-28 160.2 11.8 97 2-100 316-438 (630)
20 2wnr_A Probable exosome comple 99.9 1.2E-22 4E-27 142.2 13.5 99 2-100 22-144 (271)
21 2je6_A RRP42, exosome complex 99.9 6.5E-23 2.2E-27 143.9 12.0 99 2-100 27-149 (277)
22 1e3p_A Guanosine pentaphosphat 99.9 5.3E-23 1.8E-27 160.1 12.1 98 2-100 353-473 (757)
23 3cdi_A Polynucleotide phosphor 99.9 1.2E-22 4.1E-27 157.6 11.7 98 2-100 318-438 (723)
24 2nn6_E Exosome complex exonucl 99.9 3.3E-22 1.1E-26 142.2 11.9 99 2-100 34-156 (305)
25 2nn6_C Exosome complex exonucl 99.9 3.3E-22 1.1E-26 140.3 10.0 99 2-100 22-144 (278)
26 3krn_A Protein C14A4.5, confir 99.9 3.3E-24 1.1E-28 146.8 -5.1 88 11-100 2-98 (222)
27 2nn6_A Polymyositis/scleroderm 99.8 1.1E-20 3.7E-25 137.1 12.2 96 2-100 37-156 (358)
28 2wp8_A Exosome complex compone 99.8 1.4E-20 4.6E-25 133.8 9.1 96 2-100 21-141 (305)
29 3u1k_A Polyribonucleotide nucl 99.5 5.4E-13 1.9E-17 102.5 10.9 84 14-97 14-117 (630)
30 3gme_A Polyribonucleotide nucl 99.2 1.2E-10 4.1E-15 88.3 10.3 85 14-100 13-118 (549)
31 1e3p_A Guanosine pentaphosphat 99.2 2.7E-10 9.3E-15 89.1 11.0 85 14-100 36-142 (757)
32 4aid_A Polyribonucleotide nucl 99.2 2.6E-10 8.9E-15 88.8 10.6 86 13-100 26-132 (726)
33 3cdi_A Polynucleotide phosphor 99.2 2.4E-10 8.1E-15 89.1 10.2 84 15-100 20-124 (723)
34 2qzi_A Uncharacterized protein 85.2 2.9 9.8E-05 24.9 5.4 53 32-90 31-83 (103)
35 3e6q_A Putative 5-carboxymethy 51.7 41 0.0014 20.9 6.0 53 46-98 76-128 (146)
36 1otg_A 5-carboxymethyl-2-hydro 46.0 45 0.0016 19.8 6.0 53 46-98 54-107 (125)
37 2d7c_C RAB11 family-interactin 28.1 60 0.0021 15.9 2.7 21 68-90 17-37 (42)
No 1
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=99.97 E-value=3.9e-30 Score=178.64 Aligned_cols=100 Identities=77% Similarity=1.137 Sum_probs=91.3
Q ss_pred CCCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe---------eCCCCCceEEEEEeeCCCCCCChhHHHH
Q 047153 1 MEIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQEKEY 71 (100)
Q Consensus 1 m~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~---------~~~~~~~~~l~v~~~p~~g~~~~~~~e~ 71 (100)
|++.|+|||+++|+||+++++|++++|||||+|++|+|+|+|+ +.+.++++.++|+|+|..|.+++++.++
T Consensus 1 meg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~e~ 80 (246)
T 3hkm_A 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEY 80 (246)
T ss_dssp ----CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECCCTTSCSSSCEEEEEEECSSSCCCTTHHHH
T ss_pred CCCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEecCcCCCcccCCCccEEEEEEeCCCCCCCChhHHHH
Confidence 8999999999999999999999999999999999999999999 1356788999999999989889999999
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 72 EMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 72 ~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
+.+|+++|+++++++.||+..|+|.++||
T Consensus 81 ~~li~r~l~~l~~~~~~~~~~I~v~~~VL 109 (246)
T 3hkm_A 81 EMTLKRTLQSICLLTVHPNTTTSVILQVV 109 (246)
T ss_dssp HHHHHHHHHHHBCTTSSCSEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCccCCCcEEEEEEEEEE
Confidence 99999999999999999999999999986
No 2
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.96 E-value=8.5e-29 Score=170.80 Aligned_cols=100 Identities=37% Similarity=0.590 Sum_probs=81.2
Q ss_pred CCCCCCCCCCCC----CCCceEEEeCCcCCCceEEEEEeCCeEEEEe---------eCCCCCceEEEEEeeCCCCCCChh
Q 047153 1 MEIDRADGRNPN----QLRPLACYCSILHRAHGSASWSQGDTKVLAA---------KNENPEKVSIEVIWKSKTGQIGKQ 67 (100)
Q Consensus 1 m~~~R~DGR~~~----e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~---------~~~~~~~~~l~v~~~p~~g~~~~~ 67 (100)
++++|+|||+++ |+||+++++|++++|||||+|++|+|+|+|+ +.+.++++.++|+|.|++|.++.+
T Consensus 13 ~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~g~l~~~~~p~~g~~~~~ 92 (237)
T 2nn6_D 13 IRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVA 92 (237)
T ss_dssp --------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC------CCEEEEEEEECSSSCCCHH
T ss_pred ccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEEeCCCcccccccCCCcEEEEEEecCCCCCCCcc
Confidence 357899999999 9999999999999999999999999999999 124578899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 68 EKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 68 ~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
+.+++.+|+++|+++++++.||+.+|+|.++||
T Consensus 93 e~~~~~li~r~l~~~i~~~~~p~~~I~I~~~VL 125 (237)
T 2nn6_D 93 EKSRERLIRNTCEAVVLGTLHPRTSITVVLQVV 125 (237)
T ss_dssp HHHHHHHHHHHHHHHCGGGCSSSEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhchhcCCceEEEEEEEEE
Confidence 999999999999999999999999999999986
No 3
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=99.95 E-value=3.9e-27 Score=164.47 Aligned_cols=99 Identities=25% Similarity=0.397 Sum_probs=87.6
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e---------CCCCCceEEEEEe--eCCC------CC
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K---------NENPEKVSIEVIW--KSKT------GQ 63 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~---------~~~~~~~~l~v~~--~p~~------g~ 63 (100)
+++|+|||+++|+||+++++|++++|||||+|++|+|+|+|+ . .+.++++.|+|+| .|++ +.
T Consensus 14 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~r~~~~ 93 (258)
T 3m7n_D 14 DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRPG 93 (258)
T ss_dssp TTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSSCCCSS
T ss_pred cCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCcccccccCCC
Confidence 578999999999999999999999999999999999999999 1 1457778877655 5643 34
Q ss_pred CChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 64 IGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 64 ~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
++.++.+++.+|+++|+++|+++.||+++|+|.++||
T Consensus 94 ~~~re~ei~~li~r~l~~~i~~~~~p~~~I~V~~~VL 130 (258)
T 3m7n_D 94 PDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130 (258)
T ss_dssp CCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhcCHHhCCceEEEEEEEEE
Confidence 6789999999999999999999999999999999986
No 4
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.94 E-value=1.5e-26 Score=159.79 Aligned_cols=99 Identities=29% Similarity=0.397 Sum_probs=87.1
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e---------CCCCCceEEEEEe--eCCC------CC
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K---------NENPEKVSIEVIW--KSKT------GQ 63 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~---------~~~~~~~~l~v~~--~p~~------g~ 63 (100)
+++|+|||+++|+||+++++|+++++||||+|++|+|+|+|+ . .+.++++.+.|+| .|++ +.
T Consensus 14 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~~~~~~~ 93 (240)
T 2wnr_B 14 PSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRPG 93 (240)
T ss_dssp -CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSSSCCCSS
T ss_pred cCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcCCccCCC
Confidence 578999999999999999999999999999999999999999 1 1456777776655 5764 34
Q ss_pred CChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 64 IGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 64 ~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
++.++.+++.+|+++|+++|+++.||+++|+|.++||
T Consensus 94 ~~~~~~~l~~ll~r~l~~~i~l~~~p~~~I~i~~~VL 130 (240)
T 2wnr_B 94 PDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVL 130 (240)
T ss_dssp CCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEE
Confidence 7789999999999999999999999999999999986
No 5
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=99.94 E-value=2.9e-26 Score=159.10 Aligned_cols=99 Identities=28% Similarity=0.429 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e---------CCCCCceEEEEEe--eCCC------CC
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K---------NENPEKVSIEVIW--KSKT------GQ 63 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~---------~~~~~~~~l~v~~--~p~~------g~ 63 (100)
+++|+|||+++|+|++++++|++++|||||+|++|+|+|+|+ . .+.++++.|.|+| .|++ +.
T Consensus 14 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~~~ 93 (249)
T 2po1_A 14 NGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEERKKPG 93 (249)
T ss_dssp SSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSSSCCCSS
T ss_pred cCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccccccCCC
Confidence 578999999999999999999999999999999999999999 1 2356777777655 4543 23
Q ss_pred CChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 64 IGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 64 ~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
++.++.+++.+|+++|+++|++++||+..|+|.++||
T Consensus 94 ~~~~~~~~s~li~r~l~~~i~l~~~p~~~i~I~~~VL 130 (249)
T 2po1_A 94 PDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVL 130 (249)
T ss_dssp CCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhccHHHCCCCEEEEEEEEE
Confidence 6789999999999999999999999999999999986
No 6
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.94 E-value=4.1e-26 Score=158.34 Aligned_cols=99 Identities=23% Similarity=0.409 Sum_probs=86.6
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe----e---C----CCCCceEEEEEe--eCCC-------
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----K---N----ENPEKVSIEVIW--KSKT------- 61 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~----~---~----~~~~~~~l~v~~--~p~~------- 61 (100)
+++|+|||+++|+||+++++|+++++||||+|++|+|+|+|+ . . +.++++.|.|+| .|++
T Consensus 14 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~a~~~~~~~ 93 (249)
T 2nn6_B 14 QGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRR 93 (249)
T ss_dssp TTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTSSSCCCT
T ss_pred CCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCCcccccccC
Confidence 578999999999999999999999999999999999999999 1 1 356777666555 5653
Q ss_pred CCCChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 62 GQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 62 g~~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
+.++.++.+++.+|+++|+++|+++.||+++|+|.++||
T Consensus 94 ~~~~~~~~~~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL 132 (249)
T 2nn6_B 94 PHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 132 (249)
T ss_dssp TTSTHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEE
T ss_pred CCCCHhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEE
Confidence 346789999999999999999999999999999999986
No 7
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-25 Score=155.28 Aligned_cols=99 Identities=26% Similarity=0.313 Sum_probs=84.0
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCC-ceEEEEEeCCeEEEEe----e------CCCCCceEEEEEe--eCCC-------
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRA-HGSASWSQGDTKVLAA----K------NENPEKVSIEVIW--KSKT------- 61 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a-~GSa~~~~G~T~V~~~----~------~~~~~~~~l~v~~--~p~~------- 61 (100)
+++|+|||+++|+|++++++|+++++ ||||+|++|+|+|+|+ . .+.++++.|.|+| .|++
T Consensus 10 ~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~r 89 (246)
T 2wp8_B 10 EGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFERSKS 89 (246)
T ss_dssp TSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC----------
T ss_pred cCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCccccccccc
Confidence 57899999999999999999999999 9999999999999999 1 1346778877665 4643
Q ss_pred -CCCChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 62 -GQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 62 -g~~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
|.++.++.+++.+|.++|+++|+++.||+.+|+|.++||
T Consensus 90 ~g~~~~~~~~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL 129 (246)
T 2wp8_B 90 SHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVL 129 (246)
T ss_dssp ----CHHHHHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEE
T ss_pred CCCCChhHHHHHHHHHHHHHHhhhHHHCCCeEEEEEEEEE
Confidence 345688999999999999999999999999999999986
No 8
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=99.93 E-value=1.6e-25 Score=155.42 Aligned_cols=99 Identities=26% Similarity=0.469 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e---------CCCCCceEEEEEe--eCCC------CC
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K---------NENPEKVSIEVIW--KSKT------GQ 63 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~---------~~~~~~~~l~v~~--~p~~------g~ 63 (100)
+++|+|||+++|+|++++++|++++|||||+|++|+|+|+|+ . .+.++++.|+|+| .|++ |.
T Consensus 18 ~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~g~ 97 (250)
T 2je6_B 18 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPA 97 (250)
T ss_dssp TSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSCCCSS
T ss_pred CCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCCccCCC
Confidence 478999999999999999999999999999999999999999 1 1256777776655 5653 34
Q ss_pred CChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 64 IGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 64 ~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
++.++.+++.+|.++|+++|+++.||+..|+|.++||
T Consensus 98 ~~~~e~~~s~li~r~l~~~i~~~~~p~~~i~I~~~VL 134 (250)
T 2je6_B 98 PSRREIELSKVIREALESAVLVELFPRTAIDVFTEIL 134 (250)
T ss_dssp CCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHHhhcCHhhCCCcEEEEEEEEE
Confidence 6789999999999999999999999999999999986
No 9
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=99.92 E-value=9e-25 Score=152.28 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e--------CCCCCceEEEEEe--eCCC----------
Q 047153 3 IDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K--------NENPEKVSIEVIW--KSKT---------- 61 (100)
Q Consensus 3 ~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~--------~~~~~~~~l~v~~--~p~~---------- 61 (100)
..|.|||+++|+||+++++|++++|||||+|++|+|+|+|+ . .+.++++.|.|+| .|++
T Consensus 10 ~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~P~a~~~~~~Re~~ 89 (255)
T 3dd6_A 10 HMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRTIRESS 89 (255)
T ss_dssp -CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECTTSSSSCCCCCCC
T ss_pred ccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCCCCCCCCCCceEEEEEEEECCCccccccccccc
Confidence 47999999999999999999999999999999999999999 1 1345677776655 4642
Q ss_pred -CCCChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 62 -GQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 62 -g~~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
|.++.++.+++++|+++|+++|+++.||+.+|+|.++||
T Consensus 90 ~g~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL 129 (255)
T 3dd6_A 90 KGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVI 129 (255)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEE
Confidence 456788999999999999999999999999999999986
No 10
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=99.92 E-value=2e-24 Score=150.37 Aligned_cols=97 Identities=28% Similarity=0.365 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e--C------CCCCceEEEEEe--eCCC-----------
Q 047153 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K--N------ENPEKVSIEVIW--KSKT----------- 61 (100)
Q Consensus 4 ~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~--~------~~~~~~~l~v~~--~p~~----------- 61 (100)
+|+|||+++|+|++++++|++++|||||+|++|+|+|+|+ . . ..++++.|.|+| .|++
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~~ 80 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQ 80 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECSCCTTSCCCCSSTT
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcCCcCCCCCCCCCceEEEEEEEcCCCccccccccccCC
Confidence 4999999999999999999999999999999999999999 1 1 235666666555 5642
Q ss_pred CCCChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 62 GQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 62 g~~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
|.++.++.+++.+|.++|+++|+++.||+.+|+|.++||
T Consensus 81 G~~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL 119 (255)
T 1udn_A 81 GRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVI 119 (255)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEE
Confidence 346788999999999999999999999999999999986
No 11
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.92 E-value=1.9e-25 Score=156.71 Aligned_cols=99 Identities=26% Similarity=0.362 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe----e---C--C------------CCCceE--EEEEee
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA----K---N--E------------NPEKVS--IEVIWK 58 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~----~---~--~------------~~~~~~--l~v~~~ 58 (100)
++.|.|||+++|+|++++++|++++|||||+|++|+|+|+|+ . . + .++.+. ++|++.
T Consensus 24 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~~~~~ 103 (272)
T 2nn6_F 24 EEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRA 103 (272)
T ss_dssp -----CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEEEEEEC
T ss_pred cCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEECCCcccccccccccccccccccCCCceEEEEEEEec
Confidence 568999999999999999999999999999999999999999 1 1 2 334444 456667
Q ss_pred CCCC------CCChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 59 SKTG------QIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 59 p~~g------~~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
|++. .++.++.+++.+|+++|+++|++++||+..|+|.++||
T Consensus 104 p~a~~~~~~~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL 151 (272)
T 2nn6_F 104 PFAGRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLL 151 (272)
T ss_dssp TTSSSSCCCSCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEE
T ss_pred CCCcCCccCCCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEE
Confidence 8653 35689999999999999999999999999999999986
No 12
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=99.92 E-value=2.9e-24 Score=148.06 Aligned_cols=97 Identities=24% Similarity=0.317 Sum_probs=82.5
Q ss_pred CCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e-----C---CCCCceEEEEEe--eCCC-----------
Q 047153 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K-----N---ENPEKVSIEVIW--KSKT----------- 61 (100)
Q Consensus 4 ~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~-----~---~~~~~~~l~v~~--~p~~----------- 61 (100)
.|+|||+++|+|++++++|++++|||||+|++|+|+|+|+ . . ..++++.|.|+| .|++
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~~ 81 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREASR 81 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCSSCCC---CCEEEEEEEECTTSSSSCCCCHHHH
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEccCccCCccCCCCcEEEEEEEEeCCCccccccccccCC
Confidence 3999999999999999999999999999999999999999 1 1 124666666654 5643
Q ss_pred CCCChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 62 GQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 62 g~~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
|.++.++.+++.+|.++|+++|+++.||+.+|+|.++||
T Consensus 82 G~~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL 120 (239)
T 1r6l_A 82 GKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVI 120 (239)
T ss_dssp TSCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEE
Confidence 446788999999999999999999999999999999986
No 13
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=99.92 E-value=5.5e-25 Score=152.31 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e--------CCCCCceEEEEEe--eCCC-----------
Q 047153 4 DRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K--------NENPEKVSIEVIW--KSKT----------- 61 (100)
Q Consensus 4 ~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~--------~~~~~~~~l~v~~--~p~~----------- 61 (100)
+|+|||+++|+||+++++|++++|||||+|++|+|+|+|+ . ...++++.+.|+| .|++
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~~ 80 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQESSK 80 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC---------------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEeccccCCccCCCCceEEEEEEEeCCCcCcccccccccC
Confidence 3999999999999999999999999999999999999999 1 1346677776655 4643
Q ss_pred CCCChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 62 GQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 62 g~~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
|.++.++.+++.+|+++|+++|+++.||+..|+|.++||
T Consensus 81 G~~~~~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL 119 (245)
T 1oys_A 81 GKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVI 119 (245)
T ss_dssp ----CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEE
T ss_pred CCCchHHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEE
Confidence 346788999999999999999999999999999999986
No 14
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.92 E-value=1.7e-24 Score=151.10 Aligned_cols=99 Identities=21% Similarity=0.269 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e---C-----CCCCceEEEEEe--eCCC---------
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K---N-----ENPEKVSIEVIW--KSKT--------- 61 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~---~-----~~~~~~~l~v~~--~p~~--------- 61 (100)
.++|+|||+++|+|++++++|++++|||||+|++|+|+|+|+ . . ..+++++|+|+| .|++
T Consensus 4 ~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~Re~ 83 (262)
T 3b4t_A 4 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRES 83 (262)
T ss_dssp -CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGSSSCCCCHH
T ss_pred CCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEecCcCCCccCCCCceEEEEEEEeCCCcccccccccc
Confidence 368999999999999999999999999999999999999999 1 1 125677777666 5542
Q ss_pred --CCCChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 62 --GQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 62 --g~~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
|.++.++.+++.+|.++|+++|+++.||+.+|+|.++||
T Consensus 84 ~~G~~~~~~~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL 124 (262)
T 3b4t_A 84 VRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVL 124 (262)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEE
Confidence 456788999999999999999999999999999999986
No 15
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.92 E-value=1.7e-24 Score=163.54 Aligned_cols=98 Identities=23% Similarity=0.363 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e----C------C----CCCceEEEEEeeCCC-----
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K----N------E----NPEKVSIEVIWKSKT----- 61 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~----~------~----~~~~~~l~v~~~p~~----- 61 (100)
++.|+|||+++|+||+++++|+++++||||+|++|+|+|+|+ . . . ......++++|.|++
T Consensus 312 ~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~st~e~~ 391 (549)
T 3gme_A 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETG 391 (549)
T ss_dssp TCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGGTTCCC
T ss_pred CCCCCCCCCCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCCcCCcc
Confidence 589999999999999999999999999999999999999999 1 0 0 123456677888863
Q ss_pred --CCCChhHHHHHHHHHHHHHHHhc-cCCCCCcEEEEEEEEC
Q 047153 62 --GQIGKQEKEYEMILKRTLQSICI-LTINPNTTTSVIIQVW 100 (100)
Q Consensus 62 --g~~~~~~~e~~~~l~~~l~~~I~-~~~~P~~~i~i~v~v~ 100 (100)
|.+++++.+++.+++++|+++|+ .++||++ |+|.++||
T Consensus 392 ~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VL 432 (549)
T 3gme_A 392 MVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEIT 432 (549)
T ss_dssp CSSCCCSSHHHHHHHHHHHHTTTCCCTTTCCCE-EEEEEEEE
T ss_pred cCCCCChhHHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEE
Confidence 34678999999999999999999 6899998 99999986
No 16
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=99.91 E-value=1.8e-23 Score=145.71 Aligned_cols=99 Identities=23% Similarity=0.304 Sum_probs=84.4
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e-------CCCCCceEEEEE--eeCCC------CCCC
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K-------NENPEKVSIEVI--WKSKT------GQIG 65 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~-------~~~~~~~~l~v~--~~p~~------g~~~ 65 (100)
+++|+|||+++|+|++++++|++++|||||++++|+|+|+|+ . .+.++++.+.|+ +.|++ |.++
T Consensus 20 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~ 99 (259)
T 3m7n_G 20 DNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPD 99 (259)
T ss_dssp TTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEECCCSSCTTSCEEEEEEECCTTSCTTCCSSSSC
T ss_pred cCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEecccCCCCCCCCceEEEEEEEeCCcccccccCCCCC
Confidence 589999999999999999999999999999999999999999 1 134566766655 55753 5577
Q ss_pred hhHHHHHHHHHHHHHH--HhccCCC---CC---cEEEEEEEEC
Q 047153 66 KQEKEYEMILKRTLQS--ICILTIN---PN---TTTSVIIQVW 100 (100)
Q Consensus 66 ~~~~e~~~~l~~~l~~--~I~~~~~---P~---~~i~i~v~v~ 100 (100)
.++.+++++|.++|++ +|.++.| |+ ..|+|.++||
T Consensus 100 ~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL 142 (259)
T 3m7n_G 100 ENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHAL 142 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEE
Confidence 8999999999999999 8888876 84 7899999886
No 17
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.90 E-value=5.7e-24 Score=164.74 Aligned_cols=98 Identities=23% Similarity=0.350 Sum_probs=84.3
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e----CC--------CCCc--eEEEEEeeCCC-----
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K----NE--------NPEK--VSIEVIWKSKT----- 61 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~----~~--------~~~~--~~l~v~~~p~~----- 61 (100)
++.|+|||+++|+||+++++|+++++||||+|++|+|+|+|+ . .. .+++ ..++++|.|++
T Consensus 328 ~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~st~er~ 407 (726)
T 4aid_A 328 TGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYSVGETG 407 (726)
T ss_dssp SSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGGGTCCC
T ss_pred CCCCCCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCcccccc
Confidence 689999999999999999999999999999999999999999 1 11 1233 45567777753
Q ss_pred --CCCChhHHHHHHHHHHHHHHHhc-cCCCCCcEEEEEEEEC
Q 047153 62 --GQIGKQEKEYEMILKRTLQSICI-LTINPNTTTSVIIQVW 100 (100)
Q Consensus 62 --g~~~~~~~e~~~~l~~~l~~~I~-~~~~P~~~i~i~v~v~ 100 (100)
|.+++++.+++.+++++|+++|+ .++||++ |+|.++||
T Consensus 408 ~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VL 448 (726)
T 4aid_A 408 RMGSPGRREIGHGKLAWRALRPMLPTKEDFPYT-IRLVSEIT 448 (726)
T ss_dssp CCSSCCHHHHHHHHHHHHHHGGGSCCTTTCCCE-EEEEEEEE
T ss_pred cCCCcchhhHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEE
Confidence 34778999999999999999999 6899998 99999986
No 18
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=99.90 E-value=3.9e-23 Score=145.17 Aligned_cols=99 Identities=22% Similarity=0.306 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e-------CCCCCceEEEE--EeeCCC------CCCC
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K-------NENPEKVSIEV--IWKSKT------GQIG 65 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~-------~~~~~~~~l~v--~~~p~~------g~~~ 65 (100)
+++|+|||+++|+||+++++|++++|||||+|++|+|+|+|+ + .+.++++.|.+ ++.|++ |.++
T Consensus 24 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~~~~~~~p~a~~~~~~g~~~ 103 (277)
T 2po1_B 24 EGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPD 103 (277)
T ss_dssp TTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTSCEEEEEEEECGGGCTTCCSSSCC
T ss_pred cCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccCCCCCCCCceEEEEEEEeCCCccccccCCCCC
Confidence 578999999999999999999999999999999999999999 1 24467777665 455643 4577
Q ss_pred hhHHHHHHHHHHHHHH--HhccCCC---CCc---EEEEEEEEC
Q 047153 66 KQEKEYEMILKRTLQS--ICILTIN---PNT---TTSVIIQVW 100 (100)
Q Consensus 66 ~~~~e~~~~l~~~l~~--~I~~~~~---P~~---~i~i~v~v~ 100 (100)
.++.+++.+|+++|++ +|.++.| |+. .|+|.++||
T Consensus 104 ~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL 146 (277)
T 2po1_B 104 ERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVL 146 (277)
T ss_dssp HHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEE
Confidence 8999999999999999 6888877 754 889998885
No 19
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=160.23 Aligned_cols=97 Identities=23% Similarity=0.359 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e------C------------CCCCceEEEEEeeCCC-
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K------N------------ENPEKVSIEVIWKSKT- 61 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~------~------------~~~~~~~l~v~~~p~~- 61 (100)
++.|+|||+++|+||+++++|+++++||||+|++|+|+|+|+ . . +......++++|.|++
T Consensus 316 ~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~~P~st 395 (630)
T 3u1k_A 316 EYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYAT 395 (630)
T ss_dssp HSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEECCGGGG
T ss_pred CCCCCCCCCCccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEecCCcc
Confidence 579999999999999999999999999999999999999999 1 1 1123567778888865
Q ss_pred ------CCCChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 62 ------GQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 62 ------g~~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
|.+++++.+++.+++++|+++|. ++||++ |+|.++||
T Consensus 396 ~e~~~~g~~~rREi~~~~Li~raLr~vi~-~~~p~t-I~V~~~VL 438 (630)
T 3u1k_A 396 NEIGKVTGLNRRELGHGALAEKALYPVIP-RDFPFT-IRVTSEVL 438 (630)
T ss_dssp TCCCCCSSCCHHHHHHHHHHHHHHGGGSC-TTCSSE-EEEEEEEE
T ss_pred cccccCCCCChHHHHHHHHHHHHHHhhCc-ccCCeE-EEEEEEEE
Confidence 44678999999999999999997 789997 99999986
No 20
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.90 E-value=1.2e-22 Score=142.22 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e-------CCCCCceEEEEEe--eCC------CCCCC
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K-------NENPEKVSIEVIW--KSK------TGQIG 65 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~-------~~~~~~~~l~v~~--~p~------~g~~~ 65 (100)
+++|+|||+++|+|++.+++|++++|||||++++|+|+|+|+ . .+.++++.|.|+| .|+ .|.++
T Consensus 22 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~ 101 (271)
T 2wnr_A 22 NKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPD 101 (271)
T ss_dssp TTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTCCEEEEEEEECGGGCTTCCCSSCC
T ss_pred cCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeeecCCCCCCCceEEEEEEEeCCcccccccCCCCc
Confidence 578999999999999999999999999999999999999999 1 2346777776655 554 34577
Q ss_pred hhHHHHHHHHHHHHHH--HhccCCC---CC---cEEEEEEEEC
Q 047153 66 KQEKEYEMILKRTLQS--ICILTIN---PN---TTTSVIIQVW 100 (100)
Q Consensus 66 ~~~~e~~~~l~~~l~~--~I~~~~~---P~---~~i~i~v~v~ 100 (100)
.++.+++++|.++|++ +|.++.| |+ ..|+|.++||
T Consensus 102 ~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL 144 (271)
T 2wnr_A 102 ERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHII 144 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEE
Confidence 8999999999999999 6888887 65 3888988885
No 21
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=99.89 E-value=6.5e-23 Score=143.91 Aligned_cols=99 Identities=27% Similarity=0.265 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e-------CCCCCceEEEEEe--eCCC------CCCC
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K-------NENPEKVSIEVIW--KSKT------GQIG 65 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~-------~~~~~~~~l~v~~--~p~~------g~~~ 65 (100)
+++|+|||+++|+|++.+++|++++|||||++++|+|+|+|+ . .+.++++.|.|+| .|++ |.++
T Consensus 27 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~ 106 (277)
T 2je6_A 27 KGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPD 106 (277)
T ss_dssp GTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTCCEEEEEEEECTTSCTTCCCSSCC
T ss_pred cCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeeeeCCCCCCCCccEEEEEEEeCCccCcccccCCCC
Confidence 578999999999999999999999999999999999999999 1 2346777766554 5653 4567
Q ss_pred hhHHHHHHHHHHHHHH--HhccCCC------CCcEEEEEEEEC
Q 047153 66 KQEKEYEMILKRTLQS--ICILTIN------PNTTTSVIIQVW 100 (100)
Q Consensus 66 ~~~~e~~~~l~~~l~~--~I~~~~~------P~~~i~i~v~v~ 100 (100)
.++.+++++|.++|++ +|.++.| ++..|+|.++||
T Consensus 107 ~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL 149 (277)
T 2je6_A 107 ENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVL 149 (277)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEE
Confidence 8899999999999999 5888988 356899999886
No 22
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.89 E-value=5.3e-23 Score=160.11 Aligned_cols=98 Identities=20% Similarity=0.300 Sum_probs=85.3
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e---------CC---CCC--ceEEEEEeeCCC-----
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K---------NE---NPE--KVSIEVIWKSKT----- 61 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~---------~~---~~~--~~~l~v~~~p~~----- 61 (100)
+++|+|||+++|+||+++++|+++++||||+|++|+|+|+|+ . .+ .++ ...++++|.|++
T Consensus 353 ~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~st~e~~ 432 (757)
T 1e3p_A 353 EKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETG 432 (757)
T ss_dssp TCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGGGTCCC
T ss_pred CCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCccccccc
Confidence 578999999999999999999999999999999999999999 1 11 233 456778888853
Q ss_pred --CCCChhHHHHHHHHHHHHHHHhc-cCCCCCcEEEEEEEEC
Q 047153 62 --GQIGKQEKEYEMILKRTLQSICI-LTINPNTTTSVIIQVW 100 (100)
Q Consensus 62 --g~~~~~~~e~~~~l~~~l~~~I~-~~~~P~~~i~i~v~v~ 100 (100)
+.+++++.+++.+++++|+++|+ .++||++ |+|.++||
T Consensus 433 ~~g~~~~reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VL 473 (757)
T 1e3p_A 433 RVGSPKRREIGHGALAERAIVPVLPTREEFPYA-IRQVSEAL 473 (757)
T ss_dssp CCSSCCHHHHHHHHHHHHHHGGGCCCTTTSCEE-EEEEEEEE
T ss_pred CCCCCchhHHHHHHHHHHHHHHhccccccCCEE-EEEEEEEE
Confidence 34678999999999999999999 6999999 99999986
No 23
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.89 E-value=1.2e-22 Score=157.58 Aligned_cols=98 Identities=23% Similarity=0.340 Sum_probs=82.4
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e----C----------CCCCceEEEEEeeCCC-----
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K----N----------ENPEKVSIEVIWKSKT----- 61 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~----~----------~~~~~~~l~v~~~p~~----- 61 (100)
+++|+|||+++|+||+++++|+++++||||+|++|+|+|+|+ + . +......++++|.|++
T Consensus 318 ~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~st~e~~ 397 (723)
T 3cdi_A 318 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETG 397 (723)
T ss_dssp TCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGGGTCCC
T ss_pred cCcCCCCCCccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCCccccc
Confidence 579999999999999999999999999999999999999999 1 0 1234577788888864
Q ss_pred --CCCChhHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEEEC
Q 047153 62 --GQIGKQEKEYEMILKRTLQSICIL-TINPNTTTSVIIQVW 100 (100)
Q Consensus 62 --g~~~~~~~e~~~~l~~~l~~~I~~-~~~P~~~i~i~v~v~ 100 (100)
|.+++++.+++.+++++|+++|++ ++||++ |+|.++||
T Consensus 398 r~g~p~~REi~~~~li~raL~~vI~~~~~~p~t-I~Vd~~VL 438 (723)
T 3cdi_A 398 MVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEIT 438 (723)
T ss_dssp CC-----CTTHHHHHHHHHHHTTSCCSSSSCSC-EEEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCcccCCCEE-EEEEEEEE
Confidence 234688899999999999999996 899998 99999986
No 24
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.88 E-value=3.3e-22 Score=142.21 Aligned_cols=99 Identities=24% Similarity=0.250 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e-------CCCCCceEEE--EEeeCCCC------CCC
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K-------NENPEKVSIE--VIWKSKTG------QIG 65 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~-------~~~~~~~~l~--v~~~p~~g------~~~ 65 (100)
+++|+|||+++|+|++.+++|++++|+|||+|++|+|+|+|+ . .+.++++.+. |+|.|++. .++
T Consensus 34 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e~~~p~~~~~~~g~l~~~v~~~p~a~~~~~~r~~~ 113 (305)
T 2nn6_E 34 EDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGD 113 (305)
T ss_dssp TTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCSCCCSSSCSSCCEEEECCCCTTTCSSCCTTSTH
T ss_pred cCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEEeeCCCcCCCCceEEEEEEEeCCCcCccccCCCCc
Confidence 578999999999999999999999999999999999999999 1 1245555555 55567642 233
Q ss_pred hhHHHHHHHHHHHHHH--HhccC---CCCCcE---EEEEEEEC
Q 047153 66 KQEKEYEMILKRTLQS--ICILT---INPNTT---TSVIIQVW 100 (100)
Q Consensus 66 ~~~~e~~~~l~~~l~~--~I~~~---~~P~~~---i~i~v~v~ 100 (100)
.++.+++.+|.++|++ +|.++ .||+.. |+|.++||
T Consensus 114 ~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL 156 (305)
T 2nn6_E 114 DLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLL 156 (305)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEEC
T ss_pred hHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEE
Confidence 6788999999999999 78888 899876 99999987
No 25
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.87 E-value=3.3e-22 Score=140.28 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e-------CCCCCceEEEE--EeeCCC------CCCC
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K-------NENPEKVSIEV--IWKSKT------GQIG 65 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~-------~~~~~~~~l~v--~~~p~~------g~~~ 65 (100)
+++|+|||+++|+|++.+++|++++|||||++++|+|+|+|+ . ...++++.|.| ++.|++ |.++
T Consensus 22 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~ 101 (278)
T 2nn6_C 22 ENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPG 101 (278)
T ss_dssp TSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEECCCCSSSTTCCCCEEEEECCSSSCTTSCSSSCC
T ss_pred cCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEeecCCCCCCCccEEEEEEEeCCccCccccCCCCc
Confidence 578999999999999999999999999999999999999999 1 22356666655 445653 4567
Q ss_pred hhHHHHHHHHHHHHHH--HhccCCC------CCcEEEEEEEEC
Q 047153 66 KQEKEYEMILKRTLQS--ICILTIN------PNTTTSVIIQVW 100 (100)
Q Consensus 66 ~~~~e~~~~l~~~l~~--~I~~~~~------P~~~i~i~v~v~ 100 (100)
.++.+++.+|.++|++ +|.++.+ +...|+|.++||
T Consensus 102 ~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL 144 (278)
T 2nn6_C 102 EEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICL 144 (278)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEE
Confidence 8999999999999995 6777764 345899999986
No 26
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=99.85 E-value=3.3e-24 Score=146.77 Aligned_cols=88 Identities=28% Similarity=0.432 Sum_probs=60.8
Q ss_pred CCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e--------CCCCCceEEEEEeeCCCCCCChhHHHHHHHHHHHHHH
Q 047153 11 PNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K--------NENPEKVSIEVIWKSKTGQIGKQEKEYEMILKRTLQS 81 (100)
Q Consensus 11 ~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~--------~~~~~~~~l~v~~~p~~g~~~~~~~e~~~~l~~~l~~ 81 (100)
++|+|++++++|++++|||||+|++|+|+|+|+ . .+.++++.|+|+|+|++|.++++ +++.+|.++|++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~~~~e~~~~~~~~~~~~l~v~~~p~~G~~~~~--e~~~li~r~l~~ 79 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCGDNKFN--VLNNIIHSTLSN 79 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC-------------CCCSSCCCC--CCS--SCTTHHHHC--C
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEECCCCCcccccCCceEEEEEEEcCCCCCCCHH--HHHHHHHHHHHH
Confidence 579999999999999999999999999999999 1 24567899999999999876555 999999999999
Q ss_pred HhccCCCCCcEEEEEEEEC
Q 047153 82 ICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 82 ~I~~~~~P~~~i~i~v~v~ 100 (100)
+|++++||+++|+|.++||
T Consensus 80 ~i~~~~~p~~~I~I~~~VL 98 (222)
T 3krn_A 80 AINLELFPHTTISVTVHGI 98 (222)
T ss_dssp CSCC-----CCCCCCCEEE
T ss_pred hccHHhCCCcEEEEEEEEE
Confidence 9999999999999999986
No 27
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.85 E-value=1.1e-20 Score=137.07 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=80.0
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e-------CCCCCceE--EEEEeeCCC------CCCC
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K-------NENPEKVS--IEVIWKSKT------GQIG 65 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~-------~~~~~~~~--l~v~~~p~~------g~~~ 65 (100)
+++|+|||+++|+|++.+++| +|+|||+|++|+|+|+|+ . .+.++++. ++|++.|++ |.++
T Consensus 37 ~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~~e~~~p~~~~~~~g~l~~~v~~~p~a~~~~~~g~~s 113 (358)
T 2nn6_A 37 EKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQS 113 (358)
T ss_dssp TTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEECCCSTTTTSCCEEEEEEECTTTCSSCCSSSTH
T ss_pred cCCCCCCCCccccCCeEEEEe---cCCcEEEEEECCcEEEEEEEecccCCcccCCCCcEEEEEEEecCCccccccCCCCC
Confidence 578999999999999999999 899999999999999999 1 22355555 556667854 4466
Q ss_pred hhHHHHHHHHHHHHHHHhccCCC--------CCcEEEEEEEEC
Q 047153 66 KQEKEYEMILKRTLQSICILTIN--------PNTTTSVIIQVW 100 (100)
Q Consensus 66 ~~~~e~~~~l~~~l~~~I~~~~~--------P~~~i~i~v~v~ 100 (100)
.++.+++.+|.++|+++++++++ |+..|+|.++||
T Consensus 114 ~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL 156 (358)
T 2nn6_A 114 DLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLL 156 (358)
T ss_dssp HHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEE
Confidence 78889999999999998766665 778999999997
No 28
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.4e-20 Score=133.75 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=67.6
Q ss_pred CCCCCCCCCCCCCCceEEEeCCcCCCceEEEEEeCCeEEEEe-e-------CCCCCc--eEEEEEeeCCC------CCCC
Q 047153 2 EIDRADGRNPNQLRPLACYCSILHRAHGSASWSQGDTKVLAA-K-------NENPEK--VSIEVIWKSKT------GQIG 65 (100)
Q Consensus 2 ~~~R~DGR~~~e~R~i~~~~g~~~~a~GSa~~~~G~T~V~~~-~-------~~~~~~--~~l~v~~~p~~------g~~~ 65 (100)
+++|+|||+++|+||+++++| ++||||+|++|+|+|+|+ . .+.+++ +.++|+|.|++ |.++
T Consensus 21 ~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~~~~~ve~~~~~~~~~~~g~~~ 97 (305)
T 2wp8_A 21 QNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNIT 97 (305)
T ss_dssp TTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC-CCSSCTTCCEEEEEECCC-------------
T ss_pred hCCCCCCCCCcccCCeEEEEc---CCCcEEEEEECCeEEEEEEeccccCCcccCCCCcEEEEEEEECCCCCccccCCCCC
Confidence 578999999999999999999 799999999999999999 1 123444 56677887753 4456
Q ss_pred -hhHHHHHHHHHHHHH--HHhccCCC---CC---cEEEEEEEEC
Q 047153 66 -KQEKEYEMILKRTLQ--SICILTIN---PN---TTTSVIIQVW 100 (100)
Q Consensus 66 -~~~~e~~~~l~~~l~--~~I~~~~~---P~---~~i~i~v~v~ 100 (100)
.++.+++.+|.++|+ ++|.++.+ |. ..|+|.++||
T Consensus 98 ~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL 141 (305)
T 2wp8_A 98 GEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFL 141 (305)
T ss_dssp ---------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEE
Confidence 888999999999999 67888765 64 4599998886
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.45 E-value=5.4e-13 Score=102.50 Aligned_cols=84 Identities=23% Similarity=0.262 Sum_probs=66.2
Q ss_pred CCceEEEeCCcCC-CceEEEEEeCCeEEEEe---eCC-CC-CceEEEEEee--CCC------------CCCChhHHHHHH
Q 047153 14 LRPLACYCSILHR-AHGSASWSQGDTKVLAA---KNE-NP-EKVSIEVIWK--SKT------------GQIGKQEKEYEM 73 (100)
Q Consensus 14 ~R~i~~~~g~~~~-a~GSa~~~~G~T~V~~~---~~~-~~-~~~~l~v~~~--p~~------------g~~~~~~~e~~~ 73 (100)
-|++.+++|.+.+ |||||++++|+|+|+|+ ..+ .+ +.+.|.|+|. |++ |.++.++.++++
T Consensus 14 ~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~~~df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~e~lisR 93 (630)
T 3u1k_A 14 NRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDKEILTSR 93 (630)
T ss_dssp SSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSSSSCCEEEEEECSEETTTTEECTTC-----CCHHHHHHHH
T ss_pred CEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCCCCCeeEEEEEEEecccccCCCCccccccCCCCCHHHHHHHH
Confidence 5899999999986 99999999999999999 111 22 3445777774 221 346778899999
Q ss_pred HHHHHHHHHhccCCCCCcEEEEEE
Q 047153 74 ILKRTLQSICILTINPNTTTSVII 97 (100)
Q Consensus 74 ~l~~~l~~~I~~~~~P~~~i~i~v 97 (100)
+|.+.|++++..+.||+++|++.|
T Consensus 94 lIdR~lRp~~~~~~~~~~qI~~~V 117 (630)
T 3u1k_A 94 IIDRSIRPLFPAGYFYDTQVLCNL 117 (630)
T ss_dssp HHHHHHGGGSCTTCCCCEEEEEEE
T ss_pred HHhHHhhhcccccCCCceEEEEEE
Confidence 999999999999999999875554
No 30
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.20 E-value=1.2e-10 Score=88.30 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=63.0
Q ss_pred CCceEEEeCCcC-CCceEEEEEeCCeEEEEe---eCC-CCCc--eEEEEEee---------CC-----CCCCChhHHHHH
Q 047153 14 LRPLACYCSILH-RAHGSASWSQGDTKVLAA---KNE-NPEK--VSIEVIWK---------SK-----TGQIGKQEKEYE 72 (100)
Q Consensus 14 ~R~i~~~~g~~~-~a~GSa~~~~G~T~V~~~---~~~-~~~~--~~l~v~~~---------p~-----~g~~~~~~~e~~ 72 (100)
-|++.+++|.+. +|+||+++++|+|+|+|+ .++ .++. .-++|+|. |. .|+++.++.+++
T Consensus 13 ~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~~g~df~Pltv~Y~e~~~a~G~iPg~~~~REGrps~~~~l~~ 92 (549)
T 3gme_A 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIA 92 (549)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTTCCSCCEEEEEEECGGGTTCCCSCC-----CCCHHHHHHH
T ss_pred CEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCCCCCCCccceeeeeeehhhcccCCCcCcCcCCCCChhhhHHH
Confidence 589999999876 599999999999999999 121 2222 33777774 21 256778999999
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 73 MILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 73 ~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
++|.|.|++++....+.. ++|.++||
T Consensus 93 RlIdR~lRplfp~~~~~e--vqI~~~Vl 118 (549)
T 3gme_A 93 RLIDRPIRPLFPEGFVNE--VQVIATVV 118 (549)
T ss_dssp HHHHHHHGGGSCTTCCSC--EEEEEEEE
T ss_pred HHhCCccccccccCCccc--EEEEEEEE
Confidence 999999999887766555 55555554
No 31
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.16 E-value=2.7e-10 Score=89.09 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=65.6
Q ss_pred CCceEEEeCCc-CCCceEEEEEe-CCeEEEEe----e--CCCCCceEEEEEee---------C-----CCCCCChhHHHH
Q 047153 14 LRPLACYCSIL-HRAHGSASWSQ-GDTKVLAA----K--NENPEKVSIEVIWK---------S-----KTGQIGKQEKEY 71 (100)
Q Consensus 14 ~R~i~~~~g~~-~~a~GSa~~~~-G~T~V~~~----~--~~~~~~~~l~v~~~---------p-----~~g~~~~~~~e~ 71 (100)
-|++.+++|.+ .+|+||+++++ |+|+|+|+ . ++..+-..|+|+|. | ..|.++.++.++
T Consensus 36 ~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~~~~df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~e~l~ 115 (757)
T 1e3p_A 36 TRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILT 115 (757)
T ss_dssp EEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECTTCSSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHHHHHH
T ss_pred CEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCCCCCCCCccEEEEEEecccccccCCCcccccCcCCChHHHHH
Confidence 38999999987 58999999999 99999999 1 12224455888884 2 136677889999
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 72 EMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 72 ~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
+++|.|.|++++.... +..|+|.++||
T Consensus 116 ~RlIdR~LRplfp~~~--~~evqv~~~Vl 142 (757)
T 1e3p_A 116 CRLIDRPLRPSFKKGL--RNEIQVVATIM 142 (757)
T ss_dssp HHHHHHHHGGGBCTTB--CEEEEEEEEEE
T ss_pred HHHHCCcchhccccCC--CCceEEEEEEE
Confidence 9999999999765433 35688888875
No 32
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.16 E-value=2.6e-10 Score=88.78 Aligned_cols=86 Identities=17% Similarity=0.315 Sum_probs=65.0
Q ss_pred CCCceEEEeCCcC-CCceEEEEEeCCeEEEEe--e-CC-CC--CceEEEEEee---------C-----CCCCCChhHHHH
Q 047153 13 QLRPLACYCSILH-RAHGSASWSQGDTKVLAA--K-NE-NP--EKVSIEVIWK---------S-----KTGQIGKQEKEY 71 (100)
Q Consensus 13 e~R~i~~~~g~~~-~a~GSa~~~~G~T~V~~~--~-~~-~~--~~~~l~v~~~---------p-----~~g~~~~~~~e~ 71 (100)
.-|++.+++|.+. +|+||+++++|+|+|+|+ . .+ .+ +-..+.|+|. | ..|+++.++.++
T Consensus 26 ~~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~~g~df~pltveY~ek~~a~G~iPg~~~~REGrps~~~~li 105 (726)
T 4aid_A 26 GGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQEKTFAAGKIPGGFFKREGRPSEKETLV 105 (726)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTTCCSCCEEEEEEECGGGGTCCCCSTTCSCCSCCHHHHHH
T ss_pred CCeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCCCCCCCcCceeeeeeehhhcccCCCcccCCCCCCCchhhhH
Confidence 3589999999776 699999999999999999 1 11 11 2244778774 2 136678899999
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 72 EMILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 72 ~~~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
+++|.|.|++++....+.. ++|.++||
T Consensus 106 ~RlIdR~lRplf~~~~~~e--vqI~~~Vl 132 (726)
T 4aid_A 106 SRLIDRPIRPLFVKGFKNE--VQVVVTVL 132 (726)
T ss_dssp HHHHHHHHGGGBCTTCCSC--EEEEEEEE
T ss_pred HHHhCCccccccccCCccc--eEEEEEEE
Confidence 9999999999998776655 44545553
No 33
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.15 E-value=2.4e-10 Score=89.08 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=63.1
Q ss_pred CceEEEeCCc-CCCceEEEEEeCCeEEEEe---e-CCCC--CceEEEEEeeCC--------------CCCCChhHHHHHH
Q 047153 15 RPLACYCSIL-HRAHGSASWSQGDTKVLAA---K-NENP--EKVSIEVIWKSK--------------TGQIGKQEKEYEM 73 (100)
Q Consensus 15 R~i~~~~g~~-~~a~GSa~~~~G~T~V~~~---~-~~~~--~~~~l~v~~~p~--------------~g~~~~~~~e~~~ 73 (100)
|++.+++|.+ .+|||||.+++|+|+|+|+ . ...+ +-.-++|+|.|. .|.|+.++.++++
T Consensus 20 r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~~~~~~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~l~sR 99 (723)
T 3cdi_A 20 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIAR 99 (723)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSSCCSCCEEEEEEECGGGGTCCCC-------CCCHHHHHHHH
T ss_pred EEEEEEeCccccCCCeeEEEEECCEEEEEEEEecCCCCCCCCeeeEEEEEeEeccccccCCCccccCCCCCChHHhHHHH
Confidence 6999999988 5899999999999999999 1 1122 334578888642 3567889999999
Q ss_pred HHHHHHHHHhccCCCCCcEEEEEEEEC
Q 047153 74 ILKRTLQSICILTINPNTTTSVIIQVW 100 (100)
Q Consensus 74 ~l~~~l~~~I~~~~~P~~~i~i~v~v~ 100 (100)
+|.|.|++++..+.+ -.++|.++||
T Consensus 100 lIdR~lRplfp~~~~--~~vqv~~~vl 124 (723)
T 3cdi_A 100 LIDRPIRPLFPEGFV--NEVQVIATVV 124 (723)
T ss_dssp HHHHHHGGGSCTTCC--SCEEEEEEEE
T ss_pred HhCccchhcccccCc--ceEEEEEEEE
Confidence 999999998765543 3466666654
No 34
>2qzi_A Uncharacterized protein; APC86636, streptococcus thermophilus LMG 18311, structural G PSI-2, protein structure initiative; 2.20A {Streptococcus thermophilus}
Probab=85.23 E-value=2.9 Score=24.93 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=34.3
Q ss_pred EEEeCCeEEEEeeCCCCCceEEEEEeeCCCCCCChhHHHHHHHHHHHHHHHhccCCCCC
Q 047153 32 SWSQGDTKVLAAKNENPEKVSIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPN 90 (100)
Q Consensus 32 ~~~~G~T~V~~~~~~~~~~~~l~v~~~p~~g~~~~~~~e~~~~l~~~l~~~I~~~~~P~ 90 (100)
.+++|+|.|+.+. .++ ..++-+. .-...-++.|++-.+++.|..-|.-+.|..
T Consensus 31 VYSlGnT~Vvyt~--a~~--h~eili~--N~~R~I~~~EIefii~~lLk~~i~~~~~~~ 83 (103)
T 2qzi_A 31 TYSAGNTDVVFTQ--APK--HYELLIS--NKHRAVKDNELEVIREFFLKRKIDKDIVLM 83 (103)
T ss_dssp EEEETTEEEEEEE--ETT--EEEEEEE--CSSSCCCHHHHHHHHHHHHHHTCCGGGBCT
T ss_pred EEecCCceEEEEe--cCC--ceEEEEE--cCCCcCCHHHHHHHHHHHHhcccccccccc
Confidence 5789999999971 111 2233332 222345788999999999998666555555
No 35
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=51.70 E-value=41 Score=20.89 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=33.9
Q ss_pred CCCCceEEEEEeeCCCCCCChhHHHHHHHHHHHHHHHhccCCCCCcEEEEEEE
Q 047153 46 ENPEKVSIEVIWKSKTGQIGKQEKEYEMILKRTLQSICILTINPNTTTSVIIQ 98 (100)
Q Consensus 46 ~~~~~~~l~v~~~p~~g~~~~~~~e~~~~l~~~l~~~I~~~~~P~~~i~i~v~ 98 (100)
..++.++++|+++-.+|.....-+++...|..++........=+...+.|.|.
T Consensus 76 ~~~~~~FVhV~i~ll~GRt~EqK~~L~e~v~~al~~~l~~~~~~~~~lsVeI~ 128 (146)
T 3e6q_A 76 AAVERAYLHACLSILDGRDAATRQALGESLCEVLAGAVAGGGEEGVQVSVEVR 128 (146)
T ss_dssp SSCCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHEEECSSSCEEEEEEEE
T ss_pred CCCCccEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCccCCceEEEEEEE
Confidence 34567899999887677665666677777777777665421003456666554
No 36
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=45.98 E-value=45 Score=19.80 Aligned_cols=53 Identities=9% Similarity=0.024 Sum_probs=30.9
Q ss_pred CCCCceEEEEEeeCCCCCCChhHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEE
Q 047153 46 ENPEKVSIEVIWKSKTGQIGKQEKEYEMILKRTLQSICIL-TINPNTTTSVIIQ 98 (100)
Q Consensus 46 ~~~~~~~l~v~~~p~~g~~~~~~~e~~~~l~~~l~~~I~~-~~~P~~~i~i~v~ 98 (100)
..++.++++++++-.+|.....-+.+...|..++....-. -.-|...|.|.+.
T Consensus 54 ~~~~~~fvhi~i~i~~GRs~eqK~~L~~~v~~~l~~~l~~~~~~~~~~vsv~i~ 107 (125)
T 1otg_A 54 GQHDYAFVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALMESRLLALSFEIE 107 (125)
T ss_dssp SCSCEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTHHHHTTSEEEEEEEEE
T ss_pred CCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEEEE
Confidence 3455689999998777764444555555555555554421 0224555665554
No 37
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=28.10 E-value=60 Score=15.92 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCC
Q 047153 68 EKEYEMILKRTLQSICILTINPN 90 (100)
Q Consensus 68 ~~e~~~~l~~~l~~~I~~~~~P~ 90 (100)
..+++.+|.+.|-.++ |.+|.
T Consensus 17 n~~Le~YID~LL~~Vm--E~~P~ 37 (42)
T 2d7c_C 17 NFRLQDYIDRIIVAIM--ETNPS 37 (42)
T ss_dssp HHHHHHHHHHHHHHHH--TTCGG
T ss_pred HHHHHHHHHHHHHHHH--HcCCc
Confidence 3578888888888877 67775
Done!